RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4275
(182 letters)
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 114 bits (286), Expect = 8e-33
Identities = 63/156 (40%), Positives = 99/156 (63%), Gaps = 4/156 (2%)
Query: 7 SFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDE-DCIGCAKTGSGKTLAFALPIL 65
+F +L L+ ++ + G + PT+IQ +IP LNDE + + A+TGSGKT +FA+P++
Sbjct: 5 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 64
Query: 66 QKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKP 125
+ + GI A++LTPTRELA Q+ D+ L NL+++ I GG + Q K L K
Sbjct: 65 ELVN-ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KNA 122
Query: 126 HIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
+IV+ TPGR+ DH++ T +L +K+ +LDEAD +
Sbjct: 123 NIVVGTPGRILDHINR-GTLNLKNVKYFILDEADEM 157
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 99.2 bits (246), Expect = 8e-27
Identities = 60/164 (36%), Positives = 83/164 (50%), Gaps = 2/164 (1%)
Query: 2 EDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFA 61
+ + SF D+ L+ L+R G + P+ IQ+ I + D I A++G+GKT FA
Sbjct: 8 NEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFA 67
Query: 62 LPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRV-SIITGGMDMVDQGKE 120
+ ILQ+ D ALVL PTRELA QI + LG M + I G + K
Sbjct: 68 ISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKL 127
Query: 121 LAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164
+ PHI++ TPGR+ D L+ S IK VLDEAD +
Sbjct: 128 QMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSR 170
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 98.4 bits (244), Expect = 1e-26
Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 1/162 (0%)
Query: 3 DPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFAL 62
D +F + L L+R G + P+ IQ+ I ++ D I +++G+GKT F++
Sbjct: 14 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSI 73
Query: 63 PILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA 122
+LQ AL+L PTRELA QI L LG MN++ GG ++ + ++L
Sbjct: 74 SVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 133
Query: 123 KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164
H+V TPGR+ D + IK LVLDEAD +
Sbjct: 134 YGQHVVAGTPGRVFDM-IRRRSLRTRAIKMLVLDEADEMLNK 174
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 95.7 bits (237), Expect = 2e-25
Identities = 61/165 (36%), Positives = 86/165 (52%), Gaps = 10/165 (6%)
Query: 3 DPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFAL 62
+ I++F +LKL+P + + PT IQK IP +L D + CA+TGSGKT AF +
Sbjct: 18 NVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLI 77
Query: 63 PILQKWCEDPY---------GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMD 113
PI+ L+L PTRELA QI + LR ++ GG D
Sbjct: 78 PIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGAD 137
Query: 114 MVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEA 158
Q +E+ H+++ATPGRL D ++ N SL K++VLDEA
Sbjct: 138 THSQIREVQMGCHLLVATPGRLVDFIE-KNKISLEFCKYIVLDEA 181
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 93.7 bits (232), Expect = 7e-25
Identities = 52/159 (32%), Positives = 84/159 (52%), Gaps = 2/159 (1%)
Query: 2 EDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFA 61
+ + F D++L+ L+R G + P+ IQ+ I ++ D + A++G+GKT F+
Sbjct: 6 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 65
Query: 62 LPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL 121
+ LQ+ AL+L PTRELA QI + L M+++V GG V+ + L
Sbjct: 66 IAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL 125
Query: 122 AKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADR 160
+ IV+ TPGR+ D+ F ++IK +LDEAD
Sbjct: 126 -RDAQIVVGTPGRVFDN-IQRRRFRTDKIKMFILDEADE 162
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 91.9 bits (227), Expect = 4e-24
Identities = 52/153 (33%), Positives = 75/153 (49%), Gaps = 3/153 (1%)
Query: 7 SFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQ 66
F D L P L+R G + P+E+Q IP + D + AK+G GKT F L LQ
Sbjct: 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 61
Query: 67 KWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKK-- 124
+ + LV+ TRELA+QI ++ K M + G + + +E+ KK
Sbjct: 62 QLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNC 121
Query: 125 PHIVIATPGRLADHLDTCNTFSLNRIKFLVLDE 157
PHIV+ TPGR+ + +L IK +LDE
Sbjct: 122 PHIVVGTPGRILALARN-KSLNLKHIKHFILDE 153
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 90.7 bits (224), Expect = 2e-23
Identities = 31/143 (21%), Positives = 45/143 (31%), Gaps = 14/143 (9%)
Query: 25 GVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTR 84
V P IQK +L E A TG GKT L + V+ PT
Sbjct: 40 CVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGK---RCYVIFPTS 96
Query: 85 ELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL------AKKPHIVIATPGRLADH 138
L Q + + + + G +E + IVI T L+ H
Sbjct: 97 LLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKH 156
Query: 139 LDTCNTFSLNRIKFLVLDEADRL 161
L F+ +D+ D +
Sbjct: 157 Y-----RELGHFDFIFVDDVDAI 174
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 87.7 bits (216), Expect = 1e-22
Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 6 KSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPIL 65
F D L L+ +G + P+ IQ+ IP L+ D + AK G+GK+ A+ +P+L
Sbjct: 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 62
Query: 66 QKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGKELAKK 124
++ I A+V+ PTRELA Q+ + + K M +V TGG ++ D L
Sbjct: 63 ERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT 122
Query: 125 PHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159
H+VIATPGR+ D ++ ++ +VLDEAD
Sbjct: 123 VHVVIATPGRILDL-IKKGVAKVDHVQMIVLDEAD 156
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 83.5 bits (205), Expect = 5e-21
Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 1/151 (0%)
Query: 7 SFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQ 66
+F D L L+ G + P+ IQ+ IP + D + AK G+GKT AF +P L+
Sbjct: 2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 61
Query: 67 KWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPH 126
K I AL++ PTRELA Q LGK + + TGG ++ D L + H
Sbjct: 62 KVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVH 121
Query: 127 IVIATPGRLADHLDTCNTFSLNRIKFLVLDE 157
I++ TPGR+ D + L+ ++DE
Sbjct: 122 ILVGTPGRVLDL-ASRKVADLSDCSLFIMDE 151
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 73.4 bits (179), Expect = 1e-16
Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 15/122 (12%)
Query: 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103
I G+GKT + I+++ + G+ L+L PTR +A ++ +
Sbjct: 10 RLTIMDLHPGAGKTKRYLPAIVREAIKR--GLRTLILAPTRVVAAEMEEAL--------- 58
Query: 104 RVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163
+ E + + + L + + +++DEA
Sbjct: 59 --RGLPIRYQTPAIRAEHTGREIVDLMCHATFTMRLL--SPIRVPNYNLIIMDEAHFTDP 114
Query: 164 MT 165
+
Sbjct: 115 AS 116
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 70.8 bits (172), Expect = 4e-16
Identities = 34/159 (21%), Positives = 53/159 (33%), Gaps = 8/159 (5%)
Query: 7 SFTDLKLNPWLIRQCQTI-GVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPIL 65
L L + Q G + Q+ II VL+ DC+ TG GK+L + +P L
Sbjct: 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPAL 62
Query: 66 QKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKP 125
+V++P L DQ G S T + +
Sbjct: 63 LLNGL------TVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQI 116
Query: 126 HIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164
++ P RL + + L +DEA +S
Sbjct: 117 RLLYIAPERLMLD-NFLEHLAHWNPVLLAVDEAHCISQW 154
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 66.5 bits (161), Expect = 1e-14
Identities = 24/160 (15%), Positives = 57/160 (35%), Gaps = 10/160 (6%)
Query: 7 SFTDL--KLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPI 64
+L ++ + + + G++ Q + V + ++ + T +GKTL + +
Sbjct: 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAM 61
Query: 65 LQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKK 124
+++ + ++ + P R LA + + F K+ +
Sbjct: 62 VREAIKGGKSLY---VVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHL----GD 114
Query: 125 PHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164
I++ T + D L + + LV+DE L
Sbjct: 115 CDIIVTTSEKA-DSLIRNRASWIKAVSCLVVDEIHLLDSE 153
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 64.7 bits (156), Expect = 8e-14
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 4/154 (2%)
Query: 7 SFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPI-- 64
FT P++I +T+ PTEIQ+ IIP L E +G ++TG+GKT A+ LPI
Sbjct: 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIME 61
Query: 65 --LQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA 122
+ E I A ++ ++ K + + GG D ++L
Sbjct: 62 KIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLN 121
Query: 123 KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLD 156
+PHIVI TPGR+ D + +V +
Sbjct: 122 VQPHIVIGTPGRINDFIREQALDVHTAHILVVDE 155
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 49.8 bits (117), Expect = 2e-08
Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 5/135 (3%)
Query: 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELA 87
P Q+ I +C+ TG GKTL + + + G L+L PT+ L
Sbjct: 9 QPRIYQEVIYAKCKE-TNCLIVLPTGLGKTLIAMMIAEYRLTKY--GGKVLMLAPTKPLV 65
Query: 88 YQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSL 147
Q + F L + ++ +TG ++ K A+ IV ++ SL
Sbjct: 66 LQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTI--ENDLLAGRISL 123
Query: 148 NRIKFLVLDEADRLS 162
+ +V DEA R
Sbjct: 124 EDVSLIVFDEAHRAV 138
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 38.7 bits (89), Expect = 7e-05
Identities = 19/133 (14%), Positives = 27/133 (20%), Gaps = 21/133 (15%)
Query: 38 PHVLNDEDC-IGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLV 96
P V A TGSGK+ + G LVL P+ G
Sbjct: 2 PAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSK 55
Query: 97 LGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLD 156
V + + S ++ D
Sbjct: 56 AHGVDP--------NIRTGVRTITTGSPITYSTYG------KFLADGGCSGGAYDIIICD 101
Query: 157 EADRLSLMTSLKF 169
E + L
Sbjct: 102 ECHSTDATSILGI 114
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 30.2 bits (67), Expect = 0.086
Identities = 24/135 (17%), Positives = 40/135 (29%), Gaps = 22/135 (16%)
Query: 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELA 87
+ + Q+ + L D+ TGSGKT + L++ PT LA
Sbjct: 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVA------MAAINELSTPTLIVVPTLALA 123
Query: 88 YQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSL 147
Q ++ + G + + ++T D
Sbjct: 124 EQWKERL----GIFGEEYVGEFSGRIKELK--------PLTVSTY----DSAYVNAEKLG 167
Query: 148 NRIKFLVLDEADRLS 162
NR L+ DE L
Sbjct: 168 NRFMLLIFDEVHHLP 182
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 28.1 bits (61), Expect = 0.34
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 39 HVLND-EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIF 76
H+L + G+GKT F IL +
Sbjct: 2 HMLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTL 40
>d2ioja1 c.98.2.2 (A:206-325) Hypothetical protein AF1212
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 120
Score = 27.4 bits (61), Expect = 0.45
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 92 DQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHI-VIATPGRLADHLDTCNTFS--LN 148
D L ++ N+R I+TG ++ V A++ + VI T D L +
Sbjct: 58 DLLLTALEMPNVRCLILTGNLEPVQLVLTKAEERGVPVILTGH---DTLTAVSRLESVFG 114
Query: 149 RIKF 152
R +
Sbjct: 115 RTRI 118
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 24.2 bits (53), Expect = 3.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQK 34
IK+ DL+ N + Q IG+K + +K
Sbjct: 28 IKTLEDLRKNEDKLNHHQRIGLKYFGDFEK 57
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 25.7 bits (55), Expect = 3.6
Identities = 11/80 (13%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 27 KTPTEIQKAIIPHVLNDED--CIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTR 84
+ ++ A +P + E + TG+GK++ G +++ P
Sbjct: 32 EKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTGLL---RGDRMVIVDPNG 88
Query: 85 ELAYQIGDQFLVLGKVMNLR 104
++ + G ++ + R
Sbjct: 89 DMLSKFGRDKDIILNPYDQR 108
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha
subunit, C-terminal domain {Propionibacterium
freudenreichii, subsp. shermanii [TaxId: 1744]}
Length = 168
Score = 24.6 bits (53), Expect = 6.2
Identities = 5/27 (18%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 113 DMVDQ-GKELAKKPHIVIATPGRLADH 138
++V++ + ++P I++A G+
Sbjct: 25 ELVEEFEQAEGRRPRILLAKMGQDGHD 51
>d1rlfa_ d.15.1.5 (A:) RalGDS-like factor, Rlf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 90
Score = 23.5 bits (51), Expect = 7.4
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 23 TIGVKTPTEIQKAIIPHVLNDEDC 46
T K P+ I + + + +
Sbjct: 27 TSQDKAPSVISRVLKKNNRDSAVA 50
>d1lfda_ d.15.1.5 (A:) Ral guanosine-nucleotide exchange factor,
RalGDS {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 87
Score = 23.6 bits (51), Expect = 7.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 23 TIGVKTPTEIQKAIIPHVLNDEDC 46
T K PT I+KA+ H L++++
Sbjct: 24 TSQDKAPTVIRKAMDKHNLDEDEP 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.143 0.440
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 703,542
Number of extensions: 31832
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 29
Length of query: 182
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,309,196
Effective search space: 133537992
Effective search space used: 133537992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.4 bits)