BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4278
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UEK|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase
pdb|3UEL|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase Bound To Adp-Hpd
pdb|3UEL|B Chain B, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase Bound To Adp-Hpd
pdb|3UEL|C Chain C, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase Bound To Adp-Hpd
Length = 588
Score = 156 bits (395), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 109/156 (69%), Gaps = 4/156 (2%)
Query: 30 FFKQLLPKIISLALRLPNVLQCGIPLLKAHSNHSITLSQLQIASLLANAFLCTYPRRNSN 89
++ +LP ++ +AL LPN+ IPLLK NHS+T+SQ QIASLLANAF CT+PRRN+
Sbjct: 201 LYQSILPDMVKIALCLPNICTQPIPLLKQKMNHSVTMSQEQIASLLANAFFCTFPRRNAK 260
Query: 90 QPESQYANFPCINFSRLFQAQSSCVSEKLKCLINYFVRVTTKDPTGLVTYSRRYLPHSQL 149
+S+Y+++P INF+RLF+ +SS EKLK L YF RVT K PTGLVT++R+ L
Sbjct: 261 M-KSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTEKKPTGLVTFTRQSL--EDF 317
Query: 150 PHWGDSRRKLPDLFISSEGMIE-NQRGLLQVDFANK 184
P W + L L ++ EG IE N RG+LQVDFAN+
Sbjct: 318 PEWERCDKPLTRLHVTYEGTIEGNGRGMLQVDFANR 353
>pdb|4B1J|A Chain A, Structure Of Human Parg Catalytic Domain In Complex With
Adp-hpd
Length = 531
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 108/156 (69%), Gaps = 4/156 (2%)
Query: 30 FFKQLLPKIISLALRLPNVLQCGIPLLKAHSNHSITLSQLQIASLLANAFLCTYPRRNSN 89
++ +LP ++ +AL LPN+ IPLL A NHSIT+SQ QIASLLANAF CT+PRRN+
Sbjct: 144 LYQSILPDMVKIALXLPNICTQPIPLLAAAMNHSITMSQEQIASLLANAFFCTFPRRNAK 203
Query: 90 QPESQYANFPCINFSRLFQAQSSCVSEKLKCLINYFVRVTTKDPTGLVTYSRRYLPHSQL 149
+S+Y+++P INF+RLF+ +SS EKLK L YF RVT PTGLVT++R+ L
Sbjct: 204 M-KSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTAAAPTGLVTFTRQSL--EDF 260
Query: 150 PHWGDSRRKLPDLFISSEGMI-ENQRGLLQVDFANK 184
P W + L L ++ EG I EN +G+LQVDFAN+
Sbjct: 261 PEWERCEKPLTRLHVTYEGTIEENGQGMLQVDFANR 296
>pdb|4FC2|A Chain A, Crystal Structure Of Mouse Poly(Adp-Ribose) Glycohydrolase
(Parg) Catalytic Domain
pdb|4FC2|B Chain B, Crystal Structure Of Mouse Poly(Adp-Ribose) Glycohydrolase
(Parg) Catalytic Domain
pdb|4FC2|C Chain C, Crystal Structure Of Mouse Poly(Adp-Ribose) Glycohydrolase
(Parg) Catalytic Domain
pdb|4FC2|D Chain D, Crystal Structure Of Mouse Poly(Adp-Ribose) Glycohydrolase
(Parg) Catalytic Domain
Length = 521
Score = 153 bits (387), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 106/156 (67%), Gaps = 4/156 (2%)
Query: 30 FFKQLLPKIISLALRLPNVLQCGIPLLKAHSNHSITLSQLQIASLLANAFLCTYPRRNSN 89
++ +LP + +AL LPN+ IPLLK NHS+T SQ QIASLLANAF CT+PRRN+
Sbjct: 144 LYQSILPDXVKIALCLPNICTQPIPLLKQKXNHSVTXSQEQIASLLANAFFCTFPRRNAK 203
Query: 90 QPESQYANFPCINFSRLFQAQSSCVSEKLKCLINYFVRVTTKDPTGLVTYSRRYLPHSQL 149
+S+Y+++P INF+RLF+ +SS EKLK L YF RVT K PTGLVT++R+ L
Sbjct: 204 M-KSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTEKKPTGLVTFTRQSL--EDF 260
Query: 150 PHWGDSRRKLPDLFISSEGMIE-NQRGLLQVDFANK 184
P W + L L ++ EG IE N RG LQVDFAN+
Sbjct: 261 PEWERCEKPLTRLHVTYEGTIEGNGRGXLQVDFANR 296
>pdb|4B1H|A Chain A, Structure Of Human Parg Catalytic Domain In Complex With
Adp-ribose
Length = 531
Score = 153 bits (387), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 108/156 (69%), Gaps = 4/156 (2%)
Query: 30 FFKQLLPKIISLALRLPNVLQCGIPLLKAHSNHSITLSQLQIASLLANAFLCTYPRRNSN 89
++ +LP ++ +AL LPN+ IPLL A NHSIT+SQ QIASLLANAF CT+PRRN+
Sbjct: 144 LYQSILPDMVKIALCLPNICTQPIPLLAAAMNHSITMSQEQIASLLANAFFCTFPRRNAK 203
Query: 90 QPESQYANFPCINFSRLFQAQSSCVSEKLKCLINYFVRVTTKDPTGLVTYSRRYLPHSQL 149
+S+Y+++P INF+RLF+ +SS EKLK L YF RVT PTGLVT++R+ L
Sbjct: 204 M-KSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTAAAPTGLVTFTRQSL--EDF 260
Query: 150 PHWGDSRRKLPDLFISSEGMI-ENQRGLLQVDFANK 184
P W + L L ++ EG I EN +G+LQVDFAN+
Sbjct: 261 PEWERCEKPLTRLHVTYEGTIEENGQGMLQVDFANR 296
>pdb|4A0D|A Chain A, Structure Of Unliganded Human Parg Catalytic Domain
pdb|4B1I|A Chain A, Structure Of Human Parg Catalytic Domain In Complex With
Oa-adp-hpd
Length = 531
Score = 153 bits (386), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 108/156 (69%), Gaps = 4/156 (2%)
Query: 30 FFKQLLPKIISLALRLPNVLQCGIPLLKAHSNHSITLSQLQIASLLANAFLCTYPRRNSN 89
++ +LP ++ +AL LPN+ IPLL A NHSIT+SQ QIASLLANAF CT+PRRN+
Sbjct: 144 LYQSILPDMVKIALCLPNICTQPIPLLAAAMNHSITMSQEQIASLLANAFFCTFPRRNAK 203
Query: 90 QPESQYANFPCINFSRLFQAQSSCVSEKLKCLINYFVRVTTKDPTGLVTYSRRYLPHSQL 149
+S+Y+++P INF+RLF+ +SS EKLK L YF RVT PTGLVT++R+ L
Sbjct: 204 M-KSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTAAAPTGLVTFTRQSL--EDF 260
Query: 150 PHWGDSRRKLPDLFISSEGMI-ENQRGLLQVDFANK 184
P W + L L ++ EG I EN +G+LQVDFAN+
Sbjct: 261 PEWERCEKPLTRLHVTYEGTIEENGQGMLQVDFANR 296
>pdb|4B1G|A Chain A, Structure Of Unliganded Human Parg Catalytic Domain
Length = 531
Score = 150 bits (378), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 106/156 (67%), Gaps = 4/156 (2%)
Query: 30 FFKQLLPKIISLALRLPNVLQCGIPLLKAHSNHSITLSQLQIASLLANAFLCTYPRRNSN 89
++ +LP + +AL LPN+ IPLL A NHSIT SQ QIASLLANAF CT+PRRN+
Sbjct: 144 LYQSILPDXVKIALCLPNICTQPIPLLAAAXNHSITXSQEQIASLLANAFFCTFPRRNA- 202
Query: 90 QPESQYANFPCINFSRLFQAQSSCVSEKLKCLINYFVRVTTKDPTGLVTYSRRYLPHSQL 149
+ +S+Y+++P INF+RLF+ +SS EKLK L YF RVT PTGLVT++R+ L
Sbjct: 203 KXKSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTAAAPTGLVTFTRQSL--EDF 260
Query: 150 PHWGDSRRKLPDLFISSEGMI-ENQRGLLQVDFANK 184
P W + L L ++ EG I EN +G LQVDFAN+
Sbjct: 261 PEWERCEKPLTRLHVTYEGTIEENGQGXLQVDFANR 296
>pdb|4EPQ|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase Rbpi Inhibitor
Complex From Tetrahymena Thermophila
Length = 477
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 30 FFKQLLPKIISLALRLPNV-LQCGIPLLKAHSNHSITLSQLQIASLLANAFLCTYPRRNS 88
F +Q +PKI L L++ L+ IP K + S+ +I+ ++ FLC
Sbjct: 106 FLEQFIPKICQLVLKIKKKQLKNQIP--KESKIYEAAFSREEISYYVSCMFLCILK---- 159
Query: 89 NQPESQYANFPCINFSRLFQAQSSCVSEKLKCLINYFVRV---TTKDPTGLVTYSRRYLP 145
+Q Y +F I L Q + EK+KC Y + + K+ +V + R +
Sbjct: 160 DQDRKIYKDFRLIYLKDLVQQINIRRQEKIKCFYEYLKQALDFSEKESKEVVIFQR--IN 217
Query: 146 HSQLP---HWGDSRR--KLPDLFISSEGMIENQRGLLQVDFAN 183
QL +W D + KL ++ ++ + +IE+ G LQVDFAN
Sbjct: 218 CGQLEDYENWVDKLKAIKLKNVQLTDDKLIEDFPGTLQVDFAN 260
>pdb|4EPP|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila.
pdb|4EPP|B Chain B, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila
Length = 477
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 30 FFKQLLPKIISLALRLPNV-LQCGIPLLKAHSNHSITLSQLQIASLLANAFLCTYPRRNS 88
F +Q +PKI L L++ L+ IP K + S+ +I+ ++ FLC
Sbjct: 106 FLEQFIPKICQLVLKIKKKQLKNQIP--KESKIYEAAFSREEISYYVSCMFLCILK---- 159
Query: 89 NQPESQYANFPCINFSRLFQAQSSCVSEKLKCLINYFVRV---TTKDPTGLVTYSRRYLP 145
+Q Y +F I L Q + EK+KC Y + + K+ +V + R +
Sbjct: 160 DQDRKIYKDFRLIYLKDLVQQINIRRQEKIKCFYEYLKQALDFSEKESKEVVIFQR--IN 217
Query: 146 HSQLP---HWGDSRR--KLPDLFISSEGMIENQRGLLQVDFAN 183
QL +W D + KL ++ ++ + +IE+ G LQVDFAN
Sbjct: 218 CGQLEDYENWVDKLKAIKLKNVQLTDDKLIEDFPGTLQVDFAN 260
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 31 FKQLLPKIISLALRLPNVLQCGIPLLKAHSNHSITLSQLQIA 72
+ ++LPK +SL RL ++ IPL+ A + ++T ++L IA
Sbjct: 21 YSEVLPKDVSLKTRLTRGIELNIPLVSAAMD-TVTEARLAIA 61
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 31 FKQLLPKIISLALRLPNVLQCGIPLLKAHSNHSITLSQLQIA 72
+ ++LPK +SL RL ++ IPL+ A + ++T ++L IA
Sbjct: 41 YSEVLPKDVSLKTRLTRGIELNIPLVSAAMD-TVTEARLAIA 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,144,763
Number of Sequences: 62578
Number of extensions: 171545
Number of successful extensions: 283
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 257
Number of HSP's gapped (non-prelim): 15
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)