BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4278
(197 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O46043|PARG_DROME Poly(ADP-ribose) glycohydrolase OS=Drosophila melanogaster GN=Parg
PE=1 SV=2
Length = 768
Score = 174 bits (440), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/188 (52%), Positives = 131/188 (69%), Gaps = 11/188 (5%)
Query: 7 DLW-FIDVKQLLQFQELDQLETDIFFKQLLPKIISLALRLPNVLQCGIPLLKAHSNHSIT 65
D W F + QLL +ELD+ ET +FF+ LLP+II LALRLP+++Q +PLLK H N S++
Sbjct: 185 DQWHFRALHQLLD-EELDESETRVFFEDLLPRIIRLALRLPDLIQSPVPLLKHHKNASLS 243
Query: 66 LSQLQIASLLANAFLCTYPRRNSNQPESQYANFPCINFSRLFQAQSSCVSEKLKCLINYF 125
LSQ QI+ LLANAFLCT+PRRN+ + +S+Y+ FP INF+RL+Q+ V EKLKC+++YF
Sbjct: 244 LSQQQISCLLANAFLCTFPRRNTLKRKSEYSTFPDINFNRLYQSTGPAVLEKLKCIMHYF 303
Query: 126 VRV--TTKD----PTGLVTYSRRYLPHSQLPHWGDSRRKLPD--LFISSEGMIENQR-GL 176
RV T +D PTG+VT+ RR L W S L D L + +EG IE++ GL
Sbjct: 304 RRVCPTERDASNVPTGVVTFVRRSGLPEHLIDWSQSAAPLGDVPLHVDAEGTIEDEGIGL 363
Query: 177 LQVDFANK 184
LQVDFANK
Sbjct: 364 LQVDFANK 371
>sp|O88622|PARG_MOUSE Poly(ADP-ribose) glycohydrolase OS=Mus musculus GN=Parg PE=1 SV=2
Length = 969
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 118/176 (67%), Gaps = 6/176 (3%)
Query: 12 DVKQLLQFQE--LDQLETDIFFKQLLPKIISLALRLPNVLQCGIPLLKAHSNHSITLSQL 69
D L+ F + L++ E ++ +LP ++ +AL LPN+ IPLLK NHS+T+SQ
Sbjct: 562 DFTALVDFWDKVLEEAEAQHLYQSILPDMVKIALCLPNICTQPIPLLKQKMNHSVTMSQE 621
Query: 70 QIASLLANAFLCTYPRRNSNQPESQYANFPCINFSRLFQAQSSCVSEKLKCLINYFVRVT 129
QIASLLANAF CT+PRRN+ +S+Y+++P INF+RLF+ +SS EKLK L YF RVT
Sbjct: 622 QIASLLANAFFCTFPRRNAKM-KSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVT 680
Query: 130 TKDPTGLVTYSRRYLPHSQLPHWGDSRRKLPDLFISSEGMIE-NQRGLLQVDFANK 184
K PTGLVT++R+ L P W + L L ++ EG IE N RG+LQVDFAN+
Sbjct: 681 EKKPTGLVTFTRQSL--EDFPEWERCEKPLTRLHVTYEGTIEGNGRGMLQVDFANR 734
>sp|Q9QYM2|PARG_RAT Poly(ADP-ribose) glycohydrolase OS=Rattus norvegicus GN=Parg PE=1
SV=1
Length = 972
Score = 160 bits (406), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 118/176 (67%), Gaps = 6/176 (3%)
Query: 12 DVKQLLQFQE--LDQLETDIFFKQLLPKIISLALRLPNVLQCGIPLLKAHSNHSITLSQL 69
D L+ F + L++ E ++ +LP ++ +AL LPN+ IPLLK NHS+T+SQ
Sbjct: 565 DFTALVDFWDKVLEEAEAQHLYQSILPDMVKIALCLPNICTQPIPLLKQKMNHSVTMSQE 624
Query: 70 QIASLLANAFLCTYPRRNSNQPESQYANFPCINFSRLFQAQSSCVSEKLKCLINYFVRVT 129
QIASLLANAF CT+PRRN+ +S+Y+++P INF+RLF+ +SS EKLK L YF RVT
Sbjct: 625 QIASLLANAFFCTFPRRNAKM-KSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVT 683
Query: 130 TKDPTGLVTYSRRYLPHSQLPHWGDSRRKLPDLFISSEGMIE-NQRGLLQVDFANK 184
K PTGLVT++R+ L P W + L L ++ EG IE N RG+LQVDFAN+
Sbjct: 684 EKKPTGLVTFTRQSL--EDFPEWERCDKPLTRLHVTYEGTIEGNGRGMLQVDFANR 737
>sp|Q86W56|PARG_HUMAN Poly(ADP-ribose) glycohydrolase OS=Homo sapiens GN=PARG PE=1 SV=1
Length = 976
Score = 160 bits (404), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 118/176 (67%), Gaps = 6/176 (3%)
Query: 12 DVKQLLQFQE--LDQLETDIFFKQLLPKIISLALRLPNVLQCGIPLLKAHSNHSITLSQL 69
D L+ F + L++ E ++ +LP ++ +AL LPN+ IPLLK NHSIT+SQ
Sbjct: 569 DFTALIDFWDKVLEEAEAQHLYQSILPDMVKIALCLPNICTQPIPLLKQKMNHSITMSQE 628
Query: 70 QIASLLANAFLCTYPRRNSNQPESQYANFPCINFSRLFQAQSSCVSEKLKCLINYFVRVT 129
QIASLLANAF CT+PRRN+ +S+Y+++P INF+RLF+ +SS EKLK L YF RVT
Sbjct: 629 QIASLLANAFFCTFPRRNAKM-KSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVT 687
Query: 130 TKDPTGLVTYSRRYLPHSQLPHWGDSRRKLPDLFISSEGMI-ENQRGLLQVDFANK 184
K PTGLVT++R+ L P W + L L ++ EG I EN +G+LQVDFAN+
Sbjct: 688 EKKPTGLVTFTRQSL--EDFPEWERCEKPLTRLHVTYEGTIEENGQGMLQVDFANR 741
>sp|O02776|PARG_BOVIN Poly(ADP-ribose) glycohydrolase OS=Bos taurus GN=PARG PE=1 SV=1
Length = 977
Score = 159 bits (403), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 118/176 (67%), Gaps = 6/176 (3%)
Query: 12 DVKQLLQFQE--LDQLETDIFFKQLLPKIISLALRLPNVLQCGIPLLKAHSNHSITLSQL 69
D L+ F + L++ E ++ +LP ++ +AL LPN+ IPLLK NHSIT+SQ
Sbjct: 570 DFTALIDFWDKVLEEAEAQHLYQSILPDMVKIALCLPNICTQPIPLLKQKMNHSITMSQE 629
Query: 70 QIASLLANAFLCTYPRRNSNQPESQYANFPCINFSRLFQAQSSCVSEKLKCLINYFVRVT 129
QIASLLANAF CT+PRRN+ +S+Y+++P INF+RLF+ +SS EKLK L YF RVT
Sbjct: 630 QIASLLANAFFCTFPRRNAKM-KSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVT 688
Query: 130 TKDPTGLVTYSRRYLPHSQLPHWGDSRRKLPDLFISSEGMIE-NQRGLLQVDFANK 184
K PTGLVT++R+ L P W + L L ++ EG IE N +G+LQVDFAN+
Sbjct: 689 EKKPTGLVTFTRQSL--EDFPEWERCEKLLTRLHVTYEGTIEGNGQGMLQVDFANR 742
>sp|Q9SKB3|PARG1_ARATH Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis thaliana GN=PARG1
PE=1 SV=2
Length = 548
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 25/186 (13%)
Query: 19 FQEL-DQLETDIFFKQLLPKIISLALRLPNVLQC--------------GIPLLKAHSNHS 63
F EL D+ E+ +F +++P + SL L+ P++L+ G+ LL +
Sbjct: 79 FDELIDEKESKRWFDEIIPALASLLLQFPSLLEVHFQNADNIVSGIKTGLRLLNSQQAGI 138
Query: 64 ITLSQLQIASLLANAFLCTYPRRNSNQPESQYANFPCINFSRLFQA----QSSCVSEKLK 119
+ LSQ I +LLA +F C +P N + P INF LF + S K++
Sbjct: 139 VFLSQELIGALLACSFFCLFPDDNRGA-----KHLPVINFDHLFASLYISYSQSQESKIR 193
Query: 120 CLINYFVRVTTKDPTGLVTYSRRYLPHSQLPHWGDSRRKLPDLFISSEGMIENQ-RGLLQ 178
C+++YF R + P G+V++ R+ W S L + S G+IE+Q L+
Sbjct: 194 CIMHYFERFCSCVPIGIVSFERKITAAPDADFWSKSDVSLCAFKVHSFGLIEDQPDNALE 253
Query: 179 VDFANK 184
VDFANK
Sbjct: 254 VDFANK 259
>sp|Q8VYA1|PARG2_ARATH Probable poly(ADP-ribose) glycohydrolase 2 OS=Arabidopsis thaliana
GN=PARG2 PE=2 SV=1
Length = 522
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 33/193 (17%)
Query: 20 QELDQLETDIFFKQLLPKIISLALRLPNVLQ--------------CGIPLLKAHSNHSIT 65
+++ + E+ FF +++P + L L+LP++L+ G+ LL +
Sbjct: 83 KKISREESANFFGEVVPALCRLLLQLPSMLEKHYQKADHVLDGVKSGLRLLGPQEAGIVL 142
Query: 66 LSQLQIASLLANAFLCTYPRRNSNQPESQYANFPCINFSRLFQ--AQSSCVSE--KLKCL 121
LSQ IA+LLA +F C +P + + N INFS LF C + K+KCL
Sbjct: 143 LSQELIAALLACSFFCLFP-----EVDRSLKNLQGINFSGLFSFPYMRHCTKQENKIKCL 197
Query: 122 INYFVRVTTKDPTGLVTYSRRYLPHSQLPH---------WGDSRRKLPDLFISSEGMIEN 172
I+YF R+ PTG V++ R+ LP PH W +S L + I + G IE+
Sbjct: 198 IHYFGRICRWMPTGFVSFERKILPLEYHPHFVSYPKADSWANSVTPLCSIEIHTSGAIED 257
Query: 173 QR-GLLQVDFANK 184
Q L+VDFA++
Sbjct: 258 QPCEALEVDFADE 270
>sp|Q867X0|PME3_CAEEL Poly(ADP-ribose) glycohydrolase pme-3 OS=Caenorhabditis elegans
GN=pme-3 PE=2 SV=1
Length = 781
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 16/124 (12%)
Query: 63 SITLSQLQIASLLANAFLCTYPRRNSNQPESQYANFPCINFSRLFQAQSSCVSEKLKCLI 122
S TLS Q A+L+A F +P+S ++ F R+ + S EKLK L
Sbjct: 431 SATLSHKQCAALVARMFFA--------RPDSPFS------FCRILSSDKSICVEKLKFLF 476
Query: 123 NYFVRVTTKDPTGLVTYSRRYLPHSQL-PHWGDSR-RKLPDLFISSEGMIENQRGLLQVD 180
YF +++ P G V++ + W D + R LP++ E +IE+ QVD
Sbjct: 477 TYFDKMSMDPPDGAVSFRLTKMDKDTFNEEWKDKKLRSLPEVEFFDEMLIEDTALCTQVD 536
Query: 181 FANK 184
FAN+
Sbjct: 537 FANE 540
>sp|Q9N5L4|PME4_CAEEL Poly(ADP-ribose) glycohydrolase pme-4 OS=Caenorhabditis elegans
GN=pme-4 PE=2 SV=2
Length = 485
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 62 HSITLSQLQIASLLANAFLCTYPRRNSNQPESQYANFPCINFSRLFQAQSSCVSEKLKCL 121
S T S +Q ASL+A F PR ++F + Q + EKLK L
Sbjct: 148 ESATFSHIQCASLIAWMFFSDTPR---------------LSFIIILQKTTCVAVEKLKFL 192
Query: 122 INYFVRVTTKDPTGLVTYSRRYLPHSQ-LPHWG-DSRRKLPDLFISSEGMIENQRGLLQV 179
YF +++ P G V++ + + H Q L +W LPD+ + + IE Q+
Sbjct: 193 FTYFDKMSIDPPIGAVSFRKMRITHKQYLENWKLRETNLLPDVQVFDKMSIEETALCTQI 252
Query: 180 DFANK 184
DFANK
Sbjct: 253 DFANK 257
>sp|Q96UR9|AOX_MONFR Alternative oxidase, mitochondrial OS=Monilinia fructicola GN=AOX1
PE=3 SV=1
Length = 358
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 125 FVRVTTKDPTGLVTYSRRYLPHSQLPHWGDSRRKLPDLFISSEGMIENQRGLLQVDF--- 181
FV ++ T S + L + LP W D K PDL I GM E R + + +
Sbjct: 244 FVGYLEEEAVLTYTLSIQDLENGHLPKWADPNFKAPDLAIEYWGMPEGHRSMRDLLYYIR 303
Query: 182 ANKSHHLEI 190
A+++ H E+
Sbjct: 304 ADEAKHREV 312
>sp|Q8NJ59|AOX_BOTFU Alternative oxidase, mitochondrial OS=Botryotinia fuckeliana GN=aox
PE=2 SV=1
Length = 361
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 125 FVRVTTKDPTGLVTYSRRYLPHSQLPHWGDSRRKLPDLFISSEGMIENQRGLLQVDF--- 181
FV ++ T S + L + LP W D K PDL + GM E R + + +
Sbjct: 247 FVGYLEEEAVLTYTLSIQDLENGHLPKWADPDFKAPDLAVEYWGMPEGNRSMRDLLYYIR 306
Query: 182 ANKSHHLEI 190
A+++ H E+
Sbjct: 307 ADEAKHREV 315
>sp|C8YR32|LOXH1_MOUSE Lipoxygenase homology domain-containing protein 1 OS=Mus musculus
GN=Loxhd1 PE=2 SV=1
Length = 2068
Score = 30.8 bits (68), Expect = 5.9, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 86 RNSNQPESQYANFPCINFSRLFQAQSSCVSEKLKCLIN-------YFVRVTTKDPTGLVT 138
R QPES FPC+ + + V E L N Y + V T D +G T
Sbjct: 641 REEGQPESDNVEFPCLRWLDKDKDDGQLVRELLPSDSNATLKNFRYHISVKTGDVSGAST 700
Query: 139 YSRRYL 144
SR Y+
Sbjct: 701 DSRVYI 706
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,731,914
Number of Sequences: 539616
Number of extensions: 2515437
Number of successful extensions: 4782
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4756
Number of HSP's gapped (non-prelim): 15
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)