Query psy4278
Match_columns 197
No_of_seqs 110 out of 168
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 21:29:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05028 PARG_cat: Poly (ADP-r 100.0 2.4E-56 5.1E-61 397.6 13.9 174 18-196 1-180 (340)
2 KOG2064|consensus 100.0 1.4E-35 3.1E-40 268.5 8.7 175 20-194 90-280 (517)
3 KOG2064|consensus 98.3 2.1E-07 4.6E-12 85.7 0.5 82 3-85 436-517 (517)
4 COG3241 Azurin [Energy product 68.7 1.2 2.7E-05 34.9 -0.6 35 54-88 107-141 (151)
5 TIGR02695 azurin azurin. Azuri 39.1 3.8 8.3E-05 32.0 -2.3 41 46-86 68-115 (125)
6 PF00325 Crp: Bacterial regula 29.1 34 0.00073 20.3 1.2 14 64-77 1-14 (32)
7 cd03488 Topoisomer_IB_N_htopoI 27.7 35 0.00076 29.1 1.4 29 50-78 20-48 (215)
8 PF05542 DUF760: Protein of un 27.5 1.5E+02 0.0032 21.2 4.6 64 13-79 2-66 (86)
9 cd00660 Topoisomer_IB_N Topois 24.4 40 0.00086 28.7 1.2 29 50-78 20-48 (215)
10 PF13018 ESPR: Extended Signal 23.1 18 0.0004 20.2 -0.7 10 1-10 1-10 (24)
11 smart00045 DAGKa Diacylglycero 23.0 87 0.0019 24.5 2.9 30 161-190 58-89 (160)
12 PF12125 Beta-TrCP_D: D domain 22.0 89 0.0019 19.6 2.1 25 16-41 2-26 (40)
13 PF14750 INTS2: Integrator com 21.9 58 0.0013 34.0 2.0 45 13-58 994-1038(1049)
No 1
>PF05028 PARG_cat: Poly (ADP-ribose) glycohydrolase (PARG); InterPro: IPR007724 Poly(ADP-ribose) glycohydrolase (PARG) is a ubiquitously expressed exo- and endoglycohydrolase which mediates oxidative and excitotoxic neuronal death [].; GO: 0004649 poly(ADP-ribose) glycohydrolase activity, 0005975 carbohydrate metabolic process; PDB: 4FC2_D 3UEL_C 3UEK_A.
Probab=100.00 E-value=2.4e-56 Score=397.64 Aligned_cols=174 Identities=46% Similarity=0.739 Sum_probs=132.7
Q ss_pred HHhhcChHHHHHHHHHHHHHHHHHHHcCcccccCCcccccCCCCCeEeecHHHHHHHHHHhhhcCccCCCCCCCCCccCC
Q psy4278 18 QFQELDQLETDIFFKQLLPKIISLALRLPNVLQCGIPLLKAHSNHSITLSQLQIASLLANAFLCTYPRRNSNQPESQYAN 97 (197)
Q Consensus 18 ~~~~l~~~e~~~Ff~~~lP~i~~lAL~lp~l~~~~iplL~~~~~~~v~LS~~qva~LLA~aFfctfp~~~~~~~~s~~~~ 97 (197)
|++.++++|+++||+++||+||+|||+||+++|++||+|.++++++++|||+|||||||||||||||+|++ ++.+
T Consensus 1 f~~~~~~~e~~~Ff~~~lp~i~~lal~l~~l~~~~i~~L~~~~~~~v~lsr~qva~LlA~aFfct~p~~~~-----~~~~ 75 (340)
T PF05028_consen 1 FDEELDEEESQDFFSETLPFIARLALRLPELFPEPIPLLKQQQNGSVTLSREQVACLLANAFFCTFPRRDS-----EYKN 75 (340)
T ss_dssp -HTTS-HHHHHHHHHTHHHHHHHHHHTHHHCS-S--B-B-TT--EEEEEEHHHHHHHHHHHHTT--TTSSS-----TCCC
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHhhHhhcCCcChhhccCCCCeEEEEHHHHHHHHHHHHhCCCCCCcc-----cccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999843 3689
Q ss_pred CCccchhHhhh----ccChhhHHHHHHHHHHHhhhhccCCCceEEEEEeec-CCCCCCCccccCCCCCCEEEecCCCccC
Q psy4278 98 FPCINFSRLFQ----AQSSCVSEKLKCLINYFVRVTTKDPTGLVTYSRRYL-PHSQLPHWGDSRRKLPDLFISSEGMIEN 172 (197)
Q Consensus 98 ~p~~nF~~lf~----~~~~~~~~KLkcll~YF~rv~~~~p~g~Vtf~R~~l-~~~~~~~w~~s~~~L~~v~v~~~g~IEd 172 (197)
+|++||++||+ ..++++++||+||+|||++|++.+|+|+|+|+|+++ +....++|.+++.+|++++|.++|+|||
T Consensus 76 ~~~~nF~~l~~~~~~~~~~~~~~KLkcll~YF~~v~~~~~~~~V~f~R~~~~~~~~~~~w~~~~~~l~~~~v~~~g~IEd 155 (340)
T PF05028_consen 76 FPSINFNKLFSSFGQSDSESQIEKLKCLLHYFERVCESMPNGVVSFERKVLDNWLSIPDWSNSTKPLCPVEVFHDGRIED 155 (340)
T ss_dssp S---SGGGGCS----SS-THHHHHHHHHHHHHHHHHHS----EEEEEEEE----SSB--CCC---B---EEEESSS-HHH
T ss_pred CCCCCHHHHhhhcccCccHhHHHHHHHHHHHHHHHhccCCCccEEEEEEeeccccchhhHHhcccccCCceeecCCcccc
Confidence 99999999999 446789999999999999999999999999999999 5566799999999999999999999999
Q ss_pred C-CCCeeEEeecCCCCCcccCCCcC
Q psy4278 173 Q-RGLLQVDFANKSHHLEIEDRRKT 196 (197)
Q Consensus 173 ~-~~~lqVDFANk~IGGGvl~~~~~ 196 (197)
. .+++||||||||||||||+++-+
T Consensus 156 ~~~~~lqVDFANk~IGGGvL~~g~v 180 (340)
T PF05028_consen 156 SGSGCLQVDFANKYIGGGVLGSGCV 180 (340)
T ss_dssp HTTTSEEEEEE-SSTTTTTTTT--S
T ss_pred CCCCcEEEEEeccccCCccccCCcc
Confidence 9 99999999999999999997643
No 2
>KOG2064|consensus
Probab=100.00 E-value=1.4e-35 Score=268.45 Aligned_cols=175 Identities=33% Similarity=0.582 Sum_probs=160.6
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHcCccccc--------------CCcccccCCCCCeEeecHHHHHHHHHHhhhcCccC
Q psy4278 20 QELDQLETDIFFKQLLPKIISLALRLPNVLQ--------------CGIPLLKAHSNHSITLSQLQIASLLANAFLCTYPR 85 (197)
Q Consensus 20 ~~l~~~e~~~Ff~~~lP~i~~lAL~lp~l~~--------------~~iplL~~~~~~~v~LS~~qva~LLA~aFfctfp~ 85 (197)
+.++..+....|+.++|.++.+||+.+.+.. .++++|+..+.+.+.++|++|.||+||+|||+||.
T Consensus 90 qf~d~~~~~~~~~~~~~~~a~~al~~~~~~~s~~~g~d~~~~~~~~~~rvlks~~~~l~~lsqelVG~lls~sf~~i~~~ 169 (517)
T KOG2064|consen 90 QFLDLLHSARWFQETIEELALLALRFFSLLESHHVGEDNLLEGIKTGVRVLKSAKAGLVFLSQELVGALLSNSFFCIFPA 169 (517)
T ss_pred HHHHHHHHHhhhccccHhHhhHHhhhhhhhhccccchhhhhhhcccceeecccccccchHHHHHHHhHHhhccceeecch
Confidence 4455667778899999999999999987753 46899999999999999999999999999999999
Q ss_pred CCCCCCCCccCCCCccchhHhhhccChhhHHHHHHHHHHHhhhhccCCCceEEEEEeecCCC-CCCCccccCCCCCCEEE
Q psy4278 86 RNSNQPESQYANFPCINFSRLFQAQSSCVSEKLKCLINYFVRVTTKDPTGLVTYSRRYLPHS-QLPHWGDSRRKLPDLFI 164 (197)
Q Consensus 86 ~~~~~~~s~~~~~p~~nF~~lf~~~~~~~~~KLkcll~YF~rv~~~~p~g~Vtf~R~~l~~~-~~~~w~~s~~~L~~v~v 164 (197)
.+..++...+.++|.++|.+++.+.+.++.||||||+|||+|++...|.|.|+|+|+....+ +...|+.++..++++++
T Consensus 170 ~~~g~~~~~~~~~~~lsf~~i~~s~~~~q~eKlk~i~hYFdr~~s~~p~G~VsF~rr~~a~d~d~efwk~~~~~~~pv~~ 249 (517)
T KOG2064|consen 170 SNRGNMHLPEINFPPLSFMRIYQSTNSCQEEKLKCIMHYFDRMSSDVPIGAVSFERRIQARDQDIEFWKKSSTNLLPVVV 249 (517)
T ss_pred hhhccCCCCccCCCccchhhhhccccHHHHHHHHHHHHHHHHhccCCCCcceeeeeccccchhhhhhhhhcccCCCceEE
Confidence 99887788888999999999999999999999999999999999999999999999998766 46789999999999999
Q ss_pred ecCCCccCC-CCCeeEEeecCCCCCcccCCC
Q psy4278 165 SSEGMIENQ-RGLLQVDFANKSHHLEIEDRR 194 (197)
Q Consensus 165 ~~~g~IEd~-~~~lqVDFANk~IGGGvl~~~ 194 (197)
+.+|.|||. .+++||||||||+|||||..+
T Consensus 250 ~~~~~~~e~~~~~tqvDFANk~LGGGvL~~G 280 (517)
T KOG2064|consen 250 HFDGMIEEEGALATQVDFANKYLGGGVLSHG 280 (517)
T ss_pred ecccceecccccccccchhhhhcCCCcccCc
Confidence 999999999 899999999999999999876
No 3
>KOG2064|consensus
Probab=98.26 E-value=2.1e-07 Score=85.74 Aligned_cols=82 Identities=33% Similarity=0.427 Sum_probs=72.8
Q ss_pred CCCCCCCCchHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHcCcccccCCcccccCCCCCeEeecHHHHHHHHHHhhhcC
Q psy4278 3 PPKSDLWFIDVKQLLQFQELDQLETDIFFKQLLPKIISLALRLPNVLQCGIPLLKAHSNHSITLSQLQIASLLANAFLCT 82 (197)
Q Consensus 3 ~~~~~~w~f~~L~~f~~~~l~~~e~~~Ff~~~lP~i~~lAL~lp~l~~~~iplL~~~~~~~v~LS~~qva~LLA~aFfct 82 (197)
..|...|+|.++-.|=++.|...+.+....... .||.+++-+|.++..++||+.+..+++++++++|+++|+||+||||
T Consensus 436 ~a~q~~RPf~sy~tFG~~eL~~~~~~~~~~~~~-d~v~~~~l~~~i~S~~~pl~~~~~~~~~~~ra~~~s~l~~~~~~~~ 514 (517)
T KOG2064|consen 436 VAGQARRPFTSYYTFGDEELRNLCQEMLTLFRN-DMVTIGQLLPIICSQPIPLLKQKMNHSIEMRAEQISSLLANAFFCT 514 (517)
T ss_pred HHhhcCCchhheeeccHHHHHHHHHHHHHHHHh-ccchHhhhhHHHhcCCccccchhhhchHHHHHHHHHHHHhhHHHhc
Confidence 356788999999999888888877766655434 9999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy4278 83 YPR 85 (197)
Q Consensus 83 fp~ 85 (197)
+|+
T Consensus 515 ~~r 517 (517)
T KOG2064|consen 515 FPR 517 (517)
T ss_pred CCC
Confidence 986
No 4
>COG3241 Azurin [Energy production and conversion]
Probab=68.69 E-value=1.2 Score=34.93 Aligned_cols=35 Identities=23% Similarity=0.507 Sum_probs=28.9
Q ss_pred ccccCCCCCeEeecHHHHHHHHHHhhhcCccCCCC
Q psy4278 54 PLLKAHSNHSITLSQLQIASLLANAFLCTYPRRNS 88 (197)
Q Consensus 54 plL~~~~~~~v~LS~~qva~LLA~aFfctfp~~~~ 88 (197)
.|+..++..|++|.-.-.+-=+.-+||||||....
T Consensus 107 klIGgGE~~S~Tfd~~kL~~g~~Y~FfCtFPGH~A 141 (151)
T COG3241 107 KLIGGGEETSLTFDPAKLADGVEYKFFCTFPGHGA 141 (151)
T ss_pred eeecCCccceEecCHHHhcCCceEEEEEecCCcHH
Confidence 56777888999999887777778899999997643
No 5
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=39.07 E-value=3.8 Score=32.02 Aligned_cols=41 Identities=17% Similarity=0.407 Sum_probs=26.5
Q ss_pred cccccCC-------cccccCCCCCeEeecHHHHHHHHHHhhhcCccCC
Q psy4278 46 PNVLQCG-------IPLLKAHSNHSITLSQLQIASLLANAFLCTYPRR 86 (197)
Q Consensus 46 p~l~~~~-------iplL~~~~~~~v~LS~~qva~LLA~aFfctfp~~ 86 (197)
..++|.+ -+++..+++.+|+++---.+.==.-.|||+||-.
T Consensus 68 ~~Yvp~~d~~ViAhTkliggGes~svtF~~~~l~~g~~Y~f~CSFPGH 115 (125)
T TIGR02695 68 NNYVKPGDARVIAHTKVIGGGEKTSVTFDVSKLSAGEDYTFFCSFPGH 115 (125)
T ss_pred cCccCCCCcceEEEccccCCCceEEEEEECCCCCCCCcceEEEcCCCc
Confidence 4566643 2788889999999973211111136799999953
No 6
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=29.13 E-value=34 Score=20.35 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=9.2
Q ss_pred EeecHHHHHHHHHH
Q psy4278 64 ITLSQLQIASLLAN 77 (197)
Q Consensus 64 v~LS~~qva~LLA~ 77 (197)
+.|||+++|..|.+
T Consensus 1 l~mtr~diA~~lG~ 14 (32)
T PF00325_consen 1 LPMTRQDIADYLGL 14 (32)
T ss_dssp EE--HHHHHHHHTS
T ss_pred CCcCHHHHHHHhCC
Confidence 46889999988764
No 7
>cd03488 Topoisomer_IB_N_htopoI_like Topoisomer_IB_N_htopoI_like : N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic). Topo I relaxes superhelical tension in duplex DNA by creating a single-strand nick, the broken strand can then rotate around the unbroken strand to remove DNA supercoils and, the nick is religated, liberating topo I. These enzymes regulate the topological changes that accompany DNA replication, transcription and other nuclear processes. Human topo I is the target of a diverse set of anticancer drugs including camptothecins (CPTs). CPTs bind to the topo I-DNA complex and inhibit religation of the single-strand nick, resulting in the accumulation of topo I-DNA adducts. This family may represent more than one structural domain.
Probab=27.69 E-value=35 Score=29.06 Aligned_cols=29 Identities=7% Similarity=0.092 Sum_probs=24.0
Q ss_pred cCCcccccCCCCCeEeecHHHHHHHHHHh
Q psy4278 50 QCGIPLLKAHSNHSITLSQLQIASLLANA 78 (197)
Q Consensus 50 ~~~iplL~~~~~~~v~LS~~qva~LLA~a 78 (197)
|++++++-.++.-.++..+++||+.-|-|
T Consensus 20 P~~Vk~~YdG~pv~L~peaEEvAtf~a~m 48 (215)
T cd03488 20 PKNVKFYYDGKPVKLSPEAEEVATFYAKM 48 (215)
T ss_pred CCCCCEEECCEECcCCHHHHHHHHHHHHH
Confidence 56889998877777778889999998866
No 8
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=27.46 E-value=1.5e+02 Score=21.22 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=33.1
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHHHHHcCcccccCCc-ccccCCCCCeEeecHHHHHHHHHHhh
Q psy4278 13 VKQLLQFQELDQLETDIFFKQLLPKIISLALRLPNVLQCGI-PLLKAHSNHSITLSQLQIASLLANAF 79 (197)
Q Consensus 13 ~L~~f~~~~l~~~e~~~Ff~~~lP~i~~lAL~lp~l~~~~i-plL~~~~~~~v~LS~~qva~LLA~aF 79 (197)
.|..|+ +.++|+....+.+..=|.+.+.--+.=.-+-..+ | ...-+-.++.|++..|-|+|.+=
T Consensus 2 ~L~~yi-~~l~pe~~~~l~~~~s~ev~e~m~~~v~~llG~l~p--~~~~~~~i~~s~~~La~L~~~~m 66 (86)
T PF05542_consen 2 DLLQYI-QSLKPERIQQLSEPASPEVLEAMKQHVSGLLGNLSP--SDQFNVTIQTSRENLAQLLAWSM 66 (86)
T ss_pred hHHHHH-HHCCHHHHHHhhccCCHHHHHHHHHHHHHHHcCCCC--cccCcceeEECHHHHHHHHHHHH
Confidence 356677 6667744444443222222222211111111122 2 23445679999999999998763
No 9
>cd00660 Topoisomer_IB_N Topoisomer_IB_N: N-terminal DNA binding fragment found in eukaryotic DNA topoisomerase (topo) IB proteins similar to the monomeric yeast and human topo I and heterodimeric topo I from Leishmania donvanni. Topo I enzymes are divided into: topo type IA (bacterial) and type IB (eukaryotic). Topo I relaxes superhelical tension in duplex DNA by creating a single-strand nick, the broken strand can then rotate around the unbroken strand to remove DNA supercoils and, the nick is religated, liberating topo I. These enzymes regulate the topological changes that accompany DNA replication, transcription and other nuclear processes. Human topo I is the target of a diverse set of anticancer drugs including camptothecins (CPTs). CPTs bind to the topo I-DNA complex and inhibit re-ligation of the single-strand nick, resulting in the accumulation of topo I-DNA adducts. In addition to differences in structure and some biochemical properties, Trypanosomatid parasite topo I diffe
Probab=24.36 E-value=40 Score=28.73 Aligned_cols=29 Identities=7% Similarity=0.064 Sum_probs=23.9
Q ss_pred cCCcccccCCCCCeEeecHHHHHHHHHHh
Q psy4278 50 QCGIPLLKAHSNHSITLSQLQIASLLANA 78 (197)
Q Consensus 50 ~~~iplL~~~~~~~v~LS~~qva~LLA~a 78 (197)
|++++++-.++.-.++..+++||+.-|-|
T Consensus 20 P~~Vk~~YdG~pv~L~peaEEvAtf~a~m 48 (215)
T cd00660 20 PKNVKFYYDGKPVKLPPEAEEVATFFAVM 48 (215)
T ss_pred cCCCCEEECCEECcCCHHHHHHHHHHHHH
Confidence 56789998887777788899999998866
No 10
>PF13018 ESPR: Extended Signal Peptide of Type V secretion system
Probab=23.15 E-value=18 Score=20.16 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=7.0
Q ss_pred CCCCCCCCCC
Q psy4278 1 MKPPKSDLWF 10 (197)
Q Consensus 1 ~~~~~~~~w~ 10 (197)
||+.|+--|+
T Consensus 1 MNkiyr~iwn 10 (24)
T PF13018_consen 1 MNKIYRLIWN 10 (24)
T ss_pred CCccEEEEEE
Confidence 7777776665
No 11
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=22.96 E-value=87 Score=24.55 Aligned_cols=30 Identities=13% Similarity=0.057 Sum_probs=20.6
Q ss_pred CEEEecCCCccCCC-CCeeEEeec-CCCCCcc
Q psy4278 161 DLFISSEGMIENQR-GLLQVDFAN-KSHHLEI 190 (197)
Q Consensus 161 ~v~v~~~g~IEd~~-~~lqVDFAN-k~IGGGv 190 (197)
+++|..+|...... ....|-++| .++|||.
T Consensus 58 ~~~i~~dg~~~~~~~~~~~v~v~N~~~~ggG~ 89 (160)
T smart00045 58 RIELECDGVDVDLPNSLEGIAVLNIPSYGGGT 89 (160)
T ss_pred ceEEEECCEeccCCCCccEEEEECCCccccCc
Confidence 45666666533333 567788999 8999986
No 12
>PF12125 Beta-TrCP_D: D domain of beta-TrCP; InterPro: IPR021977 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found associated with PF00646 from PFAM, PF00400 from PFAM. The protein that contains this domain functions as a ubiquitin ligase. Ubiquitination is required to direct proteins towards the proteasome for degradation. This protein is part of the WD40 class of F box proteins. The D domain of these F box proteins is involved in mediating the dimerisation of the protein. Dimerisation is necessary to polyubiquitinate substrates so this D domain is vital in directing substrates towards the proteasome for degradation. ; PDB: 2P64_A 1P22_A.
Probab=21.98 E-value=89 Score=19.65 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=18.7
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHH
Q psy4278 16 LLQFQELDQLETDIFFKQLLPKIISL 41 (197)
Q Consensus 16 ~f~~~~l~~~e~~~Ff~~~lP~i~~l 41 (197)
.+| +.+++.|+.+|-+.+|-+|...
T Consensus 2 ~~F-~~Wse~eQvdFVe~Ll~rM~H~ 26 (40)
T PF12125_consen 2 EYF-DKWSESEQVDFVEQLLSRMCHY 26 (40)
T ss_dssp HHH-TTS-HHHHHHHHHHHHHTS-HH
T ss_pred chh-hccCchhHHHHHHHHHHHHHHH
Confidence 356 6789999999999999888754
No 13
>PF14750 INTS2: Integrator complex subunit 2
Probab=21.91 E-value=58 Score=33.95 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=37.3
Q ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHHHHHcCcccccCCcccccC
Q psy4278 13 VKQLLQFQELDQLETDIFFKQLLPKIISLALRLPNVLQCGIPLLKA 58 (197)
Q Consensus 13 ~L~~f~~~~l~~~e~~~Ff~~~lP~i~~lAL~lp~l~~~~iplL~~ 58 (197)
.+.... ..++.+++..||..++|.+++++-..|.|-+.-+.+|.+
T Consensus 994 ~~~~ll-~~l~~~~~~~~~~~~lP~l~~~~~aFP~L~~~i~~lL~~ 1038 (1049)
T PF14750_consen 994 VLSTLL-SVLSSDSRSKFLKPVLPALVRICEAFPPLADDIVRLLMQ 1038 (1049)
T ss_pred HHHHHh-hhcCchhHHHHHHHHhHHHHHHHHHCCChHHHHHHHHHH
Confidence 455555 577888999999999999999999999998876777753
Done!