Query psy4278
Match_columns 197
No_of_seqs 110 out of 168
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 21:29:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uek_A Poly(ADP-ribose) glycoh 100.0 2.3E-64 7.9E-69 470.0 19.5 191 2-195 173-364 (588)
2 4a0d_A Poly(ADP-ribose) glycoh 100.0 3.7E-62 1.3E-66 453.5 19.6 191 2-195 116-307 (531)
3 4epp_A Poly(ADP-ribose) glycoh 100.0 9.9E-57 3.4E-61 410.5 9.9 183 3-195 83-272 (477)
4 3c4r_A Uncharacterized protein 65.6 4.8 0.00017 31.3 3.3 55 66-123 21-80 (151)
5 2p64_A F-BOX/WD repeat protein 21.6 67 0.0023 20.4 2.5 27 16-43 14-40 (52)
6 1ttw_B YSCM2; chaperone, type 18.8 37 0.0013 21.4 0.8 12 64-75 29-40 (56)
7 2c41_A DPS family DNA-binding 16.5 79 0.0027 23.4 2.4 20 5-24 35-54 (158)
8 2chp_A MRGA, metalloregulation 14.8 1.1E+02 0.0036 22.7 2.8 31 7-39 39-69 (153)
9 3ak8_A DNA protection during s 14.4 1.1E+02 0.0036 23.2 2.7 30 7-38 55-84 (167)
10 2bk6_A Non-heme iron-containin 14.2 1.1E+02 0.0038 22.6 2.8 32 6-39 34-65 (156)
No 1
>3uek_A Poly(ADP-ribose) glycohydrolase; mammalian PArg, macrodomain; 1.95A {Rattus norvegicus} PDB: 3uel_A*
Probab=100.00 E-value=2.3e-64 Score=470.02 Aligned_cols=191 Identities=45% Similarity=0.713 Sum_probs=183.8
Q ss_pred CCCCCCCCCchHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHcCcccccCCcccccCCCCCeEeecHHHHHHHHHHhhhc
Q psy4278 2 KPPKSDLWFIDVKQLLQFQELDQLETDIFFKQLLPKIISLALRLPNVLQCGIPLLKAHSNHSITLSQLQIASLLANAFLC 81 (197)
Q Consensus 2 ~~~~~~~w~f~~L~~f~~~~l~~~e~~~Ff~~~lP~i~~lAL~lp~l~~~~iplL~~~~~~~v~LS~~qva~LLA~aFfc 81 (197)
|++|+++|||++|+.||++.++++|+++||+++||+||+|||+||+++|++||+|+++++++|+|||+||||||||||||
T Consensus 173 n~~~~~~w~f~~L~~f~~~~l~~~e~~~FF~~~lP~i~~LAL~lp~l~~~~iplL~~~~~~sv~LSq~QvA~LLAnaFFC 252 (588)
T 3uek_A 173 NVAYSKKWDFTALVDFWDKVLEEAEAQHLYQSILPDMVKIALCLPNICTQPIPLLKQKMNHSVTMSQEQIASLLANAFFC 252 (588)
T ss_dssp CGGGTTTCCCHHHHHHHHTTSCHHHHHHHHHTHHHHHHHHHHTHHHHCCSCCBCBCTTCCEEEEEEHHHHHHHHHHHHTT
T ss_pred hhhhcccCCHHHHHHHHHhcCCHHHHHHHHHHHhHHHHHHHhhchhhcccccchhccCCCceEEecHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCccCCCCccchhHhhhccChhhHHHHHHHHHHHhhhhccCCCceEEEEEeecCCCCCCCccccCCCCCC
Q psy4278 82 TYPRRNSNQPESQYANFPCINFSRLFQAQSSCVSEKLKCLINYFVRVTTKDPTGLVTYSRRYLPHSQLPHWGDSRRKLPD 161 (197)
Q Consensus 82 tfp~~~~~~~~s~~~~~p~~nF~~lf~~~~~~~~~KLkcll~YF~rv~~~~p~g~Vtf~R~~l~~~~~~~w~~s~~~L~~ 161 (197)
|||+|+++ .+++|.+||+|||++||++.++.++|||+||||||++|++.+|+|+|||+|+++ ++.|+|..++.+|++
T Consensus 253 tfP~r~~~-~~~~~~~~p~iNF~~lf~~~~~~~~eKLkcll~YF~rv~~~~p~G~Vtf~R~~l--~~~~~w~~s~~~L~~ 329 (588)
T 3uek_A 253 TFPRRNAK-MKSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTEKKPTGLVTFTRQSL--EDFPEWERCDKPLTR 329 (588)
T ss_dssp CCTTCCCS-SSCTTTTSCCCSCGGGGCSSCSSHHHHHHHHHHHHHHHHHSCCCCEEEEEEEEC--SCCCCGGGCCCCCCC
T ss_pred cCCCCCcc-cccccccCCCcCHHHHhcCcchhhHHHHHHHHHHHHHHhcCCCCceEEEEEEec--CCccchhhhcCcCcc
Confidence 99999975 468899999999999999988889999999999999999999999999999999 567999999999999
Q ss_pred EEEecCCCccCC-CCCeeEEeecCCCCCcccCCCc
Q psy4278 162 LFISSEGMIENQ-RGLLQVDFANKSHHLEIEDRRK 195 (197)
Q Consensus 162 v~v~~~g~IEd~-~~~lqVDFANk~IGGGvl~~~~ 195 (197)
++|.++|+|||+ .|++|||||||+||||||+++-
T Consensus 330 l~V~~~G~IEd~~~~~lqVDFANk~IGGGvL~~g~ 364 (588)
T 3uek_A 330 LHVTYEGTIEGNGRGMLQVDFANRFVGGGVTGAGL 364 (588)
T ss_dssp EEEESSSCHHHHTTTSEEEEEECSSTTTTTTSSCC
T ss_pred eEEecCCccCcCCCCcEEEEEeccccCccccCCCc
Confidence 999999999998 8999999999999999999864
No 2
>4a0d_A Poly(ADP-ribose) glycohydrolase; 1.75A {Homo sapiens} PDB: 4fc2_A
Probab=100.00 E-value=3.7e-62 Score=453.50 Aligned_cols=191 Identities=44% Similarity=0.701 Sum_probs=184.0
Q ss_pred CCCCCCCCCchHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHcCcccccCCcccccCCCCCeEeecHHHHHHHHHHhhhc
Q psy4278 2 KPPKSDLWFIDVKQLLQFQELDQLETDIFFKQLLPKIISLALRLPNVLQCGIPLLKAHSNHSITLSQLQIASLLANAFLC 81 (197)
Q Consensus 2 ~~~~~~~w~f~~L~~f~~~~l~~~e~~~Ff~~~lP~i~~lAL~lp~l~~~~iplL~~~~~~~v~LS~~qva~LLA~aFfc 81 (197)
|++|+++|+|++|+.||++.++++|+++||++|||+||+|||+||+++|++||+|+++++++|+|||+||||||||||||
T Consensus 116 n~~~~~~~~f~~L~~f~~~~l~~~e~~~Ff~~~lP~i~~lAL~lp~l~~~~i~lL~~~~~~~v~LSr~QvA~LLA~aFfc 195 (531)
T 4a0d_A 116 NVAYSKKWDFTALIDFWDKVLEEAEAQHLYQSILPDMVKIALCLPNICTQPIPLLAAAMNHSITMSQEQIASLLANAFFC 195 (531)
T ss_dssp CGGGTTTCCCHHHHHHHHHTSCHHHHHHHHHTHHHHHHHHHHTHHHHCCSCCBCBCTTCCEEEEEEHHHHHHHHHHHHTT
T ss_pred hHHhcCCCChHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHHhhhhhcCCCCeeeecCCcceEEEcHHHHHHHHHHHHhC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCccCCCCccchhHhhhccChhhHHHHHHHHHHHhhhhccCCCceEEEEEeecCCCCCCCccccCCCCCC
Q psy4278 82 TYPRRNSNQPESQYANFPCINFSRLFQAQSSCVSEKLKCLINYFVRVTTKDPTGLVTYSRRYLPHSQLPHWGDSRRKLPD 161 (197)
Q Consensus 82 tfp~~~~~~~~s~~~~~p~~nF~~lf~~~~~~~~~KLkcll~YF~rv~~~~p~g~Vtf~R~~l~~~~~~~w~~s~~~L~~ 161 (197)
|||+|++. .+++|.++|+|||.++|.+.++.++|||+||+|||++|++.+|+|.|+|+|+++ .+.|+|..++.+|++
T Consensus 196 tfP~r~~~-~~~~~~~~~~inF~~l~~~~~~~~~eKLkcLl~YF~rv~~~~~~g~Vsf~R~~l--~~~~~w~~s~~~L~~ 272 (531)
T 4a0d_A 196 TFPRRNAK-MKSEYSSYPDINFNRLFEGRSSRKPEKLKTLFCYFRRVTAAAPTGLVTFTRQSL--EDFPEWERCEKPLTR 272 (531)
T ss_dssp CCTTSCCT-TCSTTTTSCCCSCGGGGSSCCTTHHHHHHHHHHHHHHHHHSCCCCEEEEEEEEC--SCCCCGGGCCCBCCC
T ss_pred cCCCCCcc-cccccCCCCcCcHHHHHhCcCHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEec--CCcccHHHccCcCCc
Confidence 99999874 468899999999999999988899999999999999999999999999999999 678999999999999
Q ss_pred EEEecCCCccCC-CCCeeEEeecCCCCCcccCCCc
Q psy4278 162 LFISSEGMIENQ-RGLLQVDFANKSHHLEIEDRRK 195 (197)
Q Consensus 162 v~v~~~g~IEd~-~~~lqVDFANk~IGGGvl~~~~ 195 (197)
++|.++|+|||+ .+++|||||||+||||||+++-
T Consensus 273 l~V~~~g~IEd~~~~~lqVDFANk~IGGGvL~~G~ 307 (531)
T 4a0d_A 273 LHVTYEGTIEENGQGMLQVDFANRFVGGGVTSAGL 307 (531)
T ss_dssp EEEESSSCHHHHTTTSEEEEEECSSTTTTTTTTCC
T ss_pred eEEeccCccccCCCCcEEEEecccccCcccccCCc
Confidence 999999999998 8999999999999999999764
No 3
>4epp_A Poly(ADP-ribose) glycohydrolase; marco domain, PAR; HET: APR; 1.95A {Tetrahymena thermophila} PDB: 4epq_A*
Probab=100.00 E-value=9.9e-57 Score=410.50 Aligned_cols=183 Identities=25% Similarity=0.405 Sum_probs=166.8
Q ss_pred CCCCCCCCchHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHcCcccccC-CcccccCCCCCeEeecHHHHHHHHHHhhhc
Q psy4278 3 PPKSDLWFIDVKQLLQFQELDQLETDIFFKQLLPKIISLALRLPNVLQC-GIPLLKAHSNHSITLSQLQIASLLANAFLC 81 (197)
Q Consensus 3 ~~~~~~w~f~~L~~f~~~~l~~~e~~~Ff~~~lP~i~~lAL~lp~l~~~-~iplL~~~~~~~v~LS~~qva~LLA~aFfc 81 (197)
..+...|+|.+| ++.++++|+++||++|||+||+|||+||+++|+ +||+ ++.+.+|+|||+||||||||||||
T Consensus 83 ~~~~~~~~~~~l----~e~l~~~e~~~FF~~~lP~ia~lAL~Lp~l~~~~~ipl--~~~~~sv~LSr~QvA~LLAnaFFc 156 (477)
T 4epp_A 83 QNDEKYFNLKAV----FEQLDKEEQTYFLEQFIPKICQLVLKIKKKQLKNQIPK--ESKIYEAAFSREEISYYVSCMFLC 156 (477)
T ss_dssp CCTTTTHHHHHH----HHHSCHHHHHHHHHTHHHHHHHHHHTCCCSEEEECCCC--TTCEEEEEEEHHHHHHHHHHHHTT
T ss_pred CCcccccCHHHH----HHhcCHHHHHHHHHHHHHHHHHHHHhchhhccCCCCCc--cCCCceEEeeHHHHHHHHHHHHhC
Confidence 344567888886 477888999999999999999999999999998 7999 567889999999999999999999
Q ss_pred CccCCCCCCCCCccCCCCccchhHhhhccChhhHHHHHHHHHHHhhhhc---cCCCceEEEEEeecC-CCCCCCccccCC
Q psy4278 82 TYPRRNSNQPESQYANFPCINFSRLFQAQSSCVSEKLKCLINYFVRVTT---KDPTGLVTYSRRYLP-HSQLPHWGDSRR 157 (197)
Q Consensus 82 tfp~~~~~~~~s~~~~~p~~nF~~lf~~~~~~~~~KLkcll~YF~rv~~---~~p~g~Vtf~R~~l~-~~~~~~w~~s~~ 157 (197)
|||+|+. ++|.++|+|||++||++.+..+++||+||+|||++|+. ++|+|+|||+|++++ ..+.|+|..++.
T Consensus 157 tfP~r~~----~~~~~~p~iNF~~lf~~~~~~~~eKLkcll~YF~rv~~~~~~~p~g~Vtf~R~~l~~~~~~~~W~~s~~ 232 (477)
T 4epp_A 157 ILKDQDR----KIYKDFRLIYLKDLVQQINIRRQEKIKCFYEYLKQALDFSEKESKEVVIFQRINCGQLEDYENWVDKLK 232 (477)
T ss_dssp CCEETTT----TEECSSHHHHSCCSSHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTCEEEEEEEECCCCCCHHHHHHHGG
T ss_pred cCCCCCc----cccccCCcccHHHHhcCccHHHHHHHHHHHHHHHHHhhccccCCCceEEEEEEecCccccccchhhccc
Confidence 9999984 45889999999999999888899999999999999998 669999999999996 556789999987
Q ss_pred --CCCCEEEecCCCccCCCCCeeEEeecCCCCCcccCCCc
Q psy4278 158 --KLPDLFISSEGMIENQRGLLQVDFANKSHHLEIEDRRK 195 (197)
Q Consensus 158 --~L~~v~v~~~g~IEd~~~~lqVDFANk~IGGGvl~~~~ 195 (197)
+|++|+|.++|+|||..+++|||||||+||||||+++-
T Consensus 233 ~~~L~~l~v~~~g~IEd~~~~lqVDFANK~IGGGvL~~g~ 272 (477)
T 4epp_A 233 AIKLKNVQLTDDKLIEDFPGTLQVDFANCDIGGGILGNGL 272 (477)
T ss_dssp GCBCCCEEEESSCCGGGCTTSEEEEEECSSTTTTTTTTCC
T ss_pred cCCCccEEEecCCcccCCCCcEEEEEeccccCCccCCCCc
Confidence 99999999999999999999999999999999999864
No 4
>3c4r_A Uncharacterized protein; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.30A {Escherichia coli O6}
Probab=65.61 E-value=4.8 Score=31.30 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=36.3
Q ss_pred ecHHHHHHHHHHhhhcCc---cCCCCCCCCCccCCC--CccchhHhhhccChhhHHHHHHHHH
Q psy4278 66 LSQLQIASLLANAFLCTY---PRRNSNQPESQYANF--PCINFSRLFQAQSSCVSEKLKCLIN 123 (197)
Q Consensus 66 LS~~qva~LLA~aFfctf---p~~~~~~~~s~~~~~--p~~nF~~lf~~~~~~~~~KLkcll~ 123 (197)
-+|++||-+++.+||+.= |+.... +++... ...++-||+.+.++...+|+.+|+-
T Consensus 21 ~gQE~VA~~Iteay~~lg~~~~~l~~~---ed~~al~nNrQkIFRWL~~DT~~~~~ki~~L~P 80 (151)
T 3c4r_A 21 DGEKVPAAEITRAYFELGMTFPELYDD---SHPEALARNTQKIFRWVEKDTPDAVEKIQALLP 80 (151)
T ss_dssp TCTHHHHHHHHHHHHHTTCCSSCCCCS---SSTTHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhcCCCCCcCCc---chHHHHHHhHHHhHHHHhCCCHHHHHHHHHHHH
Confidence 589999999999999863 222110 101111 1234559999988888888888764
No 5
>2p64_A F-BOX/WD repeat protein 1A; right handed super-helical bundle, ligase; 2.50A {Homo sapiens}
Probab=21.56 E-value=67 Score=20.41 Aligned_cols=27 Identities=7% Similarity=0.156 Sum_probs=21.5
Q ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHH
Q psy4278 16 LLQFQELDQLETDIFFKQLLPKIISLAL 43 (197)
Q Consensus 16 ~f~~~~l~~~e~~~Ff~~~lP~i~~lAL 43 (197)
..| ..+++.|..+|+.+++-+|...++
T Consensus 14 ~~f-~~Wse~eQvdfv~~L~~rm~hyQ~ 40 (52)
T 2p64_A 14 KYF-EQWSESDQVEFVEHLISQMCHYQH 40 (52)
T ss_dssp HHH-TTSCHHHHHHHHHHHHHTSCHHHH
T ss_pred HHH-HhccchHHHHHHHHHHHHhhHHHH
Confidence 445 578889999999999888877664
No 6
>1ttw_B YSCM2; chaperone, type III secretion; 2.38A {Yersinia pestis}
Probab=18.82 E-value=37 Score=21.42 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=9.8
Q ss_pred EeecHHHHHHHH
Q psy4278 64 ITLSQLQIASLL 75 (197)
Q Consensus 64 v~LS~~qva~LL 75 (197)
-.|+|..|||||
T Consensus 29 T~L~R~DiA~LL 40 (56)
T 1ttw_B 29 TILNRQDVAKLL 40 (56)
T ss_pred hhhhHHHHHHHc
Confidence 357899999987
No 7
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus}
Probab=16.54 E-value=79 Score=23.37 Aligned_cols=20 Identities=10% Similarity=-0.184 Sum_probs=15.2
Q ss_pred CCCCCCchHHHHHHHhhcCh
Q psy4278 5 KSDLWFIDVKQLLQFQELDQ 24 (197)
Q Consensus 5 ~~~~w~f~~L~~f~~~~l~~ 24 (197)
|-+.|.|.+|+.+|++...+
T Consensus 35 ~v~g~~f~~lh~~~~~~~~e 54 (158)
T 2c41_A 35 LTYGPLFRDLHLLFEEQGSE 54 (158)
T ss_dssp HCCSTTHHHHHHHHHHHHHH
T ss_pred heECcChHHHHHHHHHHHHH
Confidence 34679999999999665444
No 8
>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding protein, DPS, dodecameric, ferritin; 2.0A {Bacillus subtilis}
Probab=14.82 E-value=1.1e+02 Score=22.74 Aligned_cols=31 Identities=3% Similarity=-0.170 Sum_probs=19.8
Q ss_pred CCCCchHHHHHHHhhcChHHHHHHHHHHHHHHH
Q psy4278 7 DLWFIDVKQLLQFQELDQLETDIFFKQLLPKII 39 (197)
Q Consensus 7 ~~w~f~~L~~f~~~~l~~~e~~~Ff~~~lP~i~ 39 (197)
..|.|..||.+|++..+++. .....+.-+|.
T Consensus 39 ~G~~f~~lh~~~ee~~~e~~--~~~D~lAERI~ 69 (153)
T 2chp_A 39 KGPHFFTLHEKFEELYDHAA--ETVDTIAERLL 69 (153)
T ss_dssp CSTTHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 57899999999976654432 34454444443
No 9
>3ak8_A DNA protection during starvation protein; DPS-like protein, dodecamer, iron-binding protein, metal BIN protein, oxidoreductase; HET: DNA; 1.25A {Salmonella enterica subsp} PDB: 3ak9_A* 1f33_A* 1f30_A* 1dps_A 1jts_A* 1jre_A* 1l8h_A* 1l8i_A* 4dyu_A*
Probab=14.44 E-value=1.1e+02 Score=23.20 Aligned_cols=30 Identities=3% Similarity=-0.247 Sum_probs=19.6
Q ss_pred CCCCchHHHHHHHhhcChHHHHHHHHHHHHHH
Q psy4278 7 DLWFIDVKQLLQFQELDQLETDIFFKQLLPKI 38 (197)
Q Consensus 7 ~~w~f~~L~~f~~~~l~~~e~~~Ff~~~lP~i 38 (197)
..|.|..||.+|++..+++. ...+.+.-+|
T Consensus 55 ~G~~f~~lh~~~ee~~~e~~--~~aD~lAERI 84 (167)
T 3ak8_A 55 RGANFIAVHEMLDGFRTALT--DHLDTMAERA 84 (167)
T ss_dssp BSTTHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred ECCChHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 57999999999976654432 4445444333
No 10
>2bk6_A Non-heme iron-containing ferritin; DPS (DNA binding protein from starved cells), ferroxidase center, mutagenesis study; 2.19A {Listeria innocua} SCOP: a.25.1.1 PDB: 1qgh_A 2bjy_A 2iy4_A 2bkc_A
Probab=14.25 E-value=1.1e+02 Score=22.64 Aligned_cols=32 Identities=0% Similarity=-0.168 Sum_probs=20.3
Q ss_pred CCCCCchHHHHHHHhhcChHHHHHHHHHHHHHHH
Q psy4278 6 SDLWFIDVKQLLQFQELDQLETDIFFKQLLPKII 39 (197)
Q Consensus 6 ~~~w~f~~L~~f~~~~l~~~e~~~Ff~~~lP~i~ 39 (197)
-..|.|..||.+|++...++. .....+.-+|.
T Consensus 34 v~G~~f~~lh~~~ee~~~e~~--~~~D~lAERI~ 65 (156)
T 2bk6_A 34 MRGHNFFTLHEKMDDLYSEFG--EQMDEVAERLL 65 (156)
T ss_dssp CCSTTHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred eECCCHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 357999999999976654432 44454444443
Done!