Query psy4278
Match_columns 197
No_of_seqs 110 out of 168
Neff 6.3
Searched_HMMs 13730
Date Fri Aug 16 21:29:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4278.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4278hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 30.0 10 0.00075 19.7 1.2 17 71-87 10-26 (30)
2 d1i5za1 a.4.5.4 (A:138-206) Ca 26.3 47 0.0035 19.6 4.4 16 61-76 25-40 (69)
3 d1ibia1 g.39.1.3 (A:117-144) C 16.9 14 0.0011 19.1 0.1 11 180-190 12-22 (28)
4 d1zyba1 a.4.5.4 (A:148-220) Pr 12.4 61 0.0044 19.6 2.4 16 61-76 23-38 (73)
5 d1c20a_ a.4.3.1 (A:) DNA-bindi 12.2 96 0.007 20.8 3.6 29 12-41 9-37 (128)
6 d1ft9a1 a.4.5.4 (A:134-213) CO 10.8 1.6E+02 0.012 17.5 4.1 14 63-76 28-41 (80)
7 d1umna_ a.25.1.1 (A:) Dodecame 10.2 85 0.0062 21.1 2.8 36 7-48 30-65 (151)
8 d2gaua1 a.4.5.4 (A:152-232) Tr 9.5 59 0.0043 19.6 1.5 14 63-76 27-40 (81)
9 d1rw1a_ c.47.1.12 (A:) Hypothe 9.5 1.1E+02 0.0079 19.7 3.0 39 36-76 76-114 (114)
10 d1oqva_ d.24.1.2 (A:) Toxin-co 9.3 71 0.0052 23.1 2.0 13 66-78 87-99 (171)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=30.01 E-value=10 Score=19.67 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=13.9
Q ss_pred HHHHHHHhhhcCccCCC
Q psy4278 71 IASLLANAFLCTYPRRN 87 (197)
Q Consensus 71 va~LLA~aFfctfp~~~ 87 (197)
-|||++.-||..|-+.+
T Consensus 10 fac~i~lfffaiffrep 26 (30)
T d2axtt1 10 FACIIALFFFAIFFREP 26 (30)
T ss_dssp HHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 48999999999886654
No 2
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.28 E-value=47 Score=19.64 Aligned_cols=16 Identities=13% Similarity=0.399 Sum_probs=13.1
Q ss_pred CCeEeecHHHHHHHHH
Q psy4278 61 NHSITLSQLQIASLLA 76 (197)
Q Consensus 61 ~~~v~LS~~qva~LLA 76 (197)
.-.+.+||+++|.++.
T Consensus 25 ~i~l~lt~~~lA~~~G 40 (69)
T d1i5za1 25 GMQIKITRQEIGQIVG 40 (69)
T ss_dssp SCEEECCHHHHHHHHT
T ss_pred eeecCCCHHHHHHHHC
Confidence 3468899999999875
No 3
>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=16.90 E-value=14 Score=19.11 Aligned_cols=11 Identities=18% Similarity=-0.218 Sum_probs=8.1
Q ss_pred EeecCCCCCcc
Q psy4278 180 DFANKSHHLEI 190 (197)
Q Consensus 180 DFANk~IGGGv 190 (197)
-=|.|.||||-
T Consensus 12 yaAEkviGaG~ 22 (28)
T d1ibia1 12 YAAEKVIGAGK 22 (28)
T ss_dssp SSSSCEESSSS
T ss_pred HHHHHHhcCCC
Confidence 34678899985
No 4
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=12.43 E-value=61 Score=19.62 Aligned_cols=16 Identities=13% Similarity=0.191 Sum_probs=12.8
Q ss_pred CCeEeecHHHHHHHHH
Q psy4278 61 NHSITLSQLQIASLLA 76 (197)
Q Consensus 61 ~~~v~LS~~qva~LLA 76 (197)
...+.+||+++|.++.
T Consensus 23 ~~~i~lt~~elA~~lg 38 (73)
T d1zyba1 23 EKTFKVKMDDLARCLD 38 (73)
T ss_dssp CEEEECCHHHHHHHHT
T ss_pred CeEeecCHHHHHHHHC
Confidence 3458899999998874
No 5
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=12.18 E-value=96 Score=20.83 Aligned_cols=29 Identities=14% Similarity=0.112 Sum_probs=23.5
Q ss_pred hHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Q psy4278 12 DVKQLLQFQELDQLETDIFFKQLLPKIISL 41 (197)
Q Consensus 12 ~~L~~f~~~~l~~~e~~~Ff~~~lP~i~~l 41 (197)
+.++..+ +..++.|++.|...+.-+|.+-
T Consensus 9 ~~~~~l~-e~~~~~er~~F~~~L~~f~~~r 37 (128)
T d1c20a_ 9 KQVRQLY-EINDDPKRKEFLDDLFSFMQKR 37 (128)
T ss_dssp HHHHHHH-HTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHH-ccCCcHHHHHHHHHHHHHHHHc
Confidence 5888888 6777788899999888888753
No 6
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=10.85 E-value=1.6e+02 Score=17.45 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=11.1
Q ss_pred eEeecHHHHHHHHH
Q psy4278 63 SITLSQLQIASLLA 76 (197)
Q Consensus 63 ~v~LS~~qva~LLA 76 (197)
.+.+||+++|.++.
T Consensus 28 ~~~~t~~eiA~~lG 41 (80)
T d1ft9a1 28 SVDFTVEEIANLIG 41 (80)
T ss_dssp EECCCHHHHHHHHC
T ss_pred ecCCCHHHHHHHHC
Confidence 46789999998874
No 7
>d1umna_ a.25.1.1 (A:) Dodecameric ferritin homolog {Streptococcus suis [TaxId: 1307]}
Probab=10.16 E-value=85 Score=21.12 Aligned_cols=36 Identities=3% Similarity=-0.026 Sum_probs=22.1
Q ss_pred CCCCchHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHcCccc
Q psy4278 7 DLWFIDVKQLLQFQELDQLETDIFFKQLLPKIISLALRLPNV 48 (197)
Q Consensus 7 ~~w~f~~L~~f~~~~l~~~e~~~Ff~~~lP~i~~lAL~lp~l 48 (197)
...+|..||.+|++..++.. ..++. |++.++.+...
T Consensus 30 ~G~~F~~lH~~f~~~~~e~~--~~~D~----lAERi~~lGg~ 65 (151)
T d1umna_ 30 RGRGFMIWHPKMDEYMEEID--GYLDE----MSERLITLGGA 65 (151)
T ss_dssp CSTTHHHHHHHHHHHHHHHH--HHHHH----HHHHHHHTTCC
T ss_pred eCCCHHHHHHHHHHHHHHHH--HHHHH----HHHHHHHcCCC
Confidence 34688999999977765532 44454 45554554443
No 8
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=9.52 E-value=59 Score=19.57 Aligned_cols=14 Identities=43% Similarity=0.458 Sum_probs=10.5
Q ss_pred eEeecHHHHHHHHH
Q psy4278 63 SITLSQLQIASLLA 76 (197)
Q Consensus 63 ~v~LS~~qva~LLA 76 (197)
.+.+||+++|.++.
T Consensus 27 ~~~lt~~eLA~~~G 40 (81)
T d2gaua1 27 SIYLSREELATLSN 40 (81)
T ss_dssp SCCCCHHHHHHHTT
T ss_pred eecCCHHHHHHHHC
Confidence 46788999888764
No 9
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.45 E-value=1.1e+02 Score=19.75 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=29.4
Q ss_pred HHHHHHHHcCcccccCCcccccCCCCCeEeecHHHHHHHHH
Q psy4278 36 PKIISLALRLPNVLQCGIPLLKAHSNHSITLSQLQIASLLA 76 (197)
Q Consensus 36 P~i~~lAL~lp~l~~~~iplL~~~~~~~v~LS~~qva~LLA 76 (197)
..++++-++-|.|+..|| +..+....|=+..++++++||
T Consensus 76 ~e~i~~i~~~P~LikRPI--v~~~~~~~iG~~~e~~~~~ls 114 (114)
T d1rw1a_ 76 AKAIELMLAQPSMIKRPV--LELGGRTLVGFKPDAYAAALA 114 (114)
T ss_dssp HHHHHHHHHCGGGBCSCE--EECSSCEEESCCHHHHHHHHC
T ss_pred HHHHHHHHhCcceEeCCE--EEECCEEEECCCHHHHHHHhC
Confidence 346677788899988775 444556678899999999886
No 10
>d1oqva_ d.24.1.2 (A:) Toxin-coregulated pilus subunit TcpA {Vibrio cholerae [TaxId: 666]}
Probab=9.30 E-value=71 Score=23.14 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=11.4
Q ss_pred ecHHHHHHHHHHh
Q psy4278 66 LSQLQIASLLANA 78 (197)
Q Consensus 66 LS~~qva~LLA~a 78 (197)
|||+||-+||...
T Consensus 87 LtqeQCrslltqV 99 (171)
T d1oqva_ 87 LTQAQCKTLITSV 99 (171)
T ss_dssp ECHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhh
Confidence 9999999999753
Done!