BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4279
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 183 bits (464), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 93/126 (73%), Positives = 94/126 (74%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPP+SPYQGGVFFLTIHFPTD
Sbjct: 7 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTD---- 62
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 63 -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 99
Query: 123 LTISKA 128
LTISK
Sbjct: 100 LTISKV 105
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 177 bits (449), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/126 (71%), Positives = 92/126 (73%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K QKELQDL RDPPAQCSAGPVGDDLFHWQATIMGP DSPYQGGVFFLTIHFPTD
Sbjct: 9 KRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTD---- 64
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTT+IYHPNINSNGSICLDILRSQWSPA
Sbjct: 65 -----------------------YPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPA 101
Query: 123 LTISKA 128
LT+SK
Sbjct: 102 LTVSKV 107
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 176 bits (447), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/126 (69%), Positives = 89/126 (70%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 61
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTTRIYHPNINSNGSI LDILRSQWSPA
Sbjct: 62 -----------------------YPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPA 98
Query: 123 LTISKA 128
LTISK
Sbjct: 99 LTISKV 104
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 176 bits (445), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 89/126 (70%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD
Sbjct: 14 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 69
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 70 -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 106
Query: 123 LTISKA 128
LTISK
Sbjct: 107 LTISKV 112
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 176 bits (445), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/126 (70%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD
Sbjct: 14 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 69
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 70 -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 106
Query: 123 LTISKA 128
LTISK
Sbjct: 107 LTISKV 112
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 175 bits (444), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/126 (70%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 61
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 62 -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 98
Query: 123 LTISKA 128
LTISK
Sbjct: 99 LTISKV 104
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 175 bits (444), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/126 (70%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 61
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 62 -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 98
Query: 123 LTISKA 128
LTISK
Sbjct: 99 LTISKV 104
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 175 bits (444), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/126 (70%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD
Sbjct: 4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 59
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 60 -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 96
Query: 123 LTISKA 128
LTISK
Sbjct: 97 LTISKV 102
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 175 bits (444), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/126 (70%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD
Sbjct: 9 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 64
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 65 -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 101
Query: 123 LTISKA 128
LTISK
Sbjct: 102 LTISKV 107
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 175 bits (444), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/126 (70%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD
Sbjct: 22 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 77
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 78 -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 114
Query: 123 LTISKA 128
LTISK
Sbjct: 115 LTISKV 120
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 175 bits (443), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 89/126 (70%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD
Sbjct: 3 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 58
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 59 -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 95
Query: 123 LTISKA 128
LTISK
Sbjct: 96 LTISKV 101
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 175 bits (443), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 89/126 (70%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD
Sbjct: 6 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 61
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 62 -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 98
Query: 123 LTISKA 128
LTISK
Sbjct: 99 LTISKV 104
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 174 bits (442), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/126 (70%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD
Sbjct: 12 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 67
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 68 -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 104
Query: 123 LTISKA 128
LTISK
Sbjct: 105 LTISKV 110
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 174 bits (440), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/126 (69%), Positives = 89/126 (70%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 61
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTTRIYHPNINSNGSICLDILRSQW PA
Sbjct: 62 -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWGPA 98
Query: 123 LTISKA 128
LTISK
Sbjct: 99 LTISKV 104
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 173 bits (439), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/126 (69%), Positives = 89/126 (70%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 61
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTTRIYHPNINSNGSICLD LRSQWSPA
Sbjct: 62 -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDALRSQWSPA 98
Query: 123 LTISKA 128
LTISK
Sbjct: 99 LTISKV 104
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 173 bits (439), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/126 (69%), Positives = 89/126 (70%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL RDPPAQCSAGPVGDD+FHWQAT MGP DSPYQGGVFFLTIHFPTD
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTD---- 61
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTTRIYHPNINSNGSICLDILRSQWSPA
Sbjct: 62 -----------------------YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 98
Query: 123 LTISKA 128
LTISK
Sbjct: 99 LTISKV 104
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 172 bits (437), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/126 (68%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K QKEL DL RDPPA CSAGPVGDDLFHWQATIMGPPDS YQGGVFFLT+HFPTD
Sbjct: 10 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTD---- 65
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PK+AFTT+IYHPNINSNGSICLDILRSQWSPA
Sbjct: 66 -----------------------YPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPA 102
Query: 123 LTISKA 128
LT+SK
Sbjct: 103 LTVSKV 108
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 172 bits (436), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/126 (68%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K QKEL DL RDPPA CSAGPVGDDLFHWQATIMGPPDS YQGGVFFLT+HFPTD
Sbjct: 22 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTD---- 77
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PK+AFTT+IYHPNINSNGSICLDILRSQWSPA
Sbjct: 78 -----------------------YPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPA 114
Query: 123 LTISKA 128
LT+SK
Sbjct: 115 LTVSKV 120
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 172 bits (436), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/126 (68%), Positives = 90/126 (71%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K QKEL DL RDPPA CSAGPVGDDLFHWQATIMGPPDS YQGGVFFLT+HFPTD
Sbjct: 6 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTD---- 61
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PK+AFTT+IYHPNINSNGSICLDILRSQWSPA
Sbjct: 62 -----------------------YPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPA 98
Query: 123 LTISKA 128
LT+SK
Sbjct: 99 LTVSKV 104
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 171 bits (434), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 88/126 (69%), Positives = 89/126 (70%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD
Sbjct: 7 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 62
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTTRIYHPNINSNGSI LDILRSQWSPA
Sbjct: 63 -----------------------YPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPA 99
Query: 123 LTISKA 128
LTISK
Sbjct: 100 LTISKV 105
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 171 bits (434), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 88/126 (69%), Positives = 89/126 (70%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 59
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTTRIYHPNINSNGSI LDILRSQWSPA
Sbjct: 60 -----------------------YPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPA 96
Query: 123 LTISKA 128
LTISK
Sbjct: 97 LTISKV 102
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 171 bits (434), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 88/126 (69%), Positives = 89/126 (70%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD
Sbjct: 22 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 77
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTTRIYHPNINSNGSI LDILRSQWSPA
Sbjct: 78 -----------------------YPFKPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPA 114
Query: 123 LTISKA 128
LTISK
Sbjct: 115 LTISKV 120
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 169 bits (429), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/126 (69%), Positives = 88/126 (69%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD
Sbjct: 3 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 58
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTTRIYHPNINSNGSI LDILRSQWSPA
Sbjct: 59 -----------------------YPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPA 95
Query: 123 LTISKA 128
L ISK
Sbjct: 96 LKISKV 101
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 167 bits (423), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/126 (68%), Positives = 87/126 (69%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL RDPPAQC AGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTD
Sbjct: 4 KRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD---- 59
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKVAFTTRIYHP INSNGSI LDILRSQWSPA
Sbjct: 60 -----------------------YPFKPPKVAFTTRIYHPAINSNGSISLDILRSQWSPA 96
Query: 123 LTISKA 128
LTISK
Sbjct: 97 LTISKV 102
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 166 bits (419), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/126 (66%), Positives = 88/126 (69%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K QKEL DL RDPPA C AGPVGDDLFHWQATIMGPPDS YQGGVFFLT+HFPTD
Sbjct: 10 KRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTD---- 65
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PK+AFTT+IYHPNINSNGSI LDILRSQWSPA
Sbjct: 66 -----------------------YPFKPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPA 102
Query: 123 LTISKA 128
LT+SK
Sbjct: 103 LTVSKV 108
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 163 bits (413), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/125 (65%), Positives = 86/125 (68%), Gaps = 27/125 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K +EL DLG+DPP+ SAGPVGDDLFHWQATIMGP DSPY GGVFFL+IHFPTD
Sbjct: 4 KRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTD---- 59
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKV FTTRIYHPNINSNGSICLDILR QWSPA
Sbjct: 60 -----------------------YPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPA 96
Query: 123 LTISK 127
LTISK
Sbjct: 97 LTISK 101
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 157 bits (397), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/125 (60%), Positives = 86/125 (68%), Gaps = 27/125 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL RDPP CSAGPVGDDL+HWQA+IMGP DSPY GGVFFL+IHFPTD
Sbjct: 5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTD---- 60
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PK++FTT+IYHPNIN+NG+ICLDIL+ QWSPA
Sbjct: 61 -----------------------YPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPA 97
Query: 123 LTISK 127
LT+SK
Sbjct: 98 LTLSK 102
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 155 bits (393), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 77/126 (61%), Positives = 83/126 (65%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K KEL DL +DPP CSAGPVGDD+FHWQATIMGP DSPY GGVFFL IHFP+D
Sbjct: 24 KRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSD---- 79
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKV FTT+IYHPNINS G+ICLDIL+ QWSPA
Sbjct: 80 -----------------------YPFKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPA 116
Query: 123 LTISKA 128
LTISK
Sbjct: 117 LTISKV 122
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 145 bits (365), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 80/123 (65%), Gaps = 27/123 (21%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXX 65
QKEL+++ +DPP CSAGPVGDD+FHW ATI GP DSPYQGG+FFL +HFP D
Sbjct: 10 QKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVD------- 62
Query: 66 XXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
YP K P+V F T++YHPNIN NG ICLDIL+ QWSPALT+
Sbjct: 63 --------------------YPFKAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTL 102
Query: 126 SKA 128
S+
Sbjct: 103 SRV 105
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 125 bits (313), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 75/126 (59%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K QKEL D+ DPP CSAGP GD+++ W++TI+GPP S Y+GGVFFL I F
Sbjct: 51 KRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITF------- 103
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
+ +YP K PKV F TRIYH NINS G ICLDIL+ WSPA
Sbjct: 104 --------------------TPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPA 143
Query: 123 LTISKA 128
LTISK
Sbjct: 144 LTISKV 149
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 74/126 (58%), Gaps = 27/126 (21%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K QKEL ++ DPP CSAGP GD+++ W++TI+GPP S Y+GGVFFL I F D
Sbjct: 6 KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPD---- 61
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPA 122
YP K PKV F TRIYH NINS G ICLDIL+ WSPA
Sbjct: 62 -----------------------YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPA 98
Query: 123 LTISKA 128
LTISK
Sbjct: 99 LTISKV 104
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 63/119 (52%), Gaps = 27/119 (22%)
Query: 7 KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
KE + L DP +A P D+L ++Q TI GP SPY+ G+F L ++ P D
Sbjct: 10 KETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD-------- 61
Query: 67 XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
YP++ PKV F T+IYHPNI+ G ICLD+L++ WSPAL I
Sbjct: 62 -------------------YPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQI 101
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 89.4 bits (220), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 63/119 (52%), Gaps = 27/119 (22%)
Query: 7 KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
KE + L DP +A P D+L ++Q TI GP SPY+ G+F L ++ P D
Sbjct: 12 KETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD-------- 63
Query: 67 XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
YP++ PKV F T+IYHPNI+ G ICLD+L++ WSPAL I
Sbjct: 64 -------------------YPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQI 103
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 88.6 bits (218), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 65/125 (52%), Gaps = 27/125 (21%)
Query: 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
+K ++ + L +DPPA S P +++ W A I GP D+P+ GG F L++ F DY
Sbjct: 6 RKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDY-- 63
Query: 62 XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSP 121
P K P V F +R++HPNI ++GSICLDIL++QWSP
Sbjct: 64 -------------------------PNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSP 98
Query: 122 ALTIS 126
++
Sbjct: 99 IYDVA 103
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 62/119 (52%), Gaps = 27/119 (22%)
Query: 7 KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
KE + L DP +A P D+L ++Q TI GP SPY+ G+F L ++ P D
Sbjct: 10 KETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD-------- 61
Query: 67 XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
YP++ PKV F T+IYHPNI+ G I LD+L++ WSPAL I
Sbjct: 62 -------------------YPMEAPKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQI 101
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 29/128 (22%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
K KE+Q + DP A + V + D+ H + T +GPP +PY+GG F + I P +
Sbjct: 5 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME--- 61
Query: 62 XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWS 120
YP K PK+ F T++YHPNI+S G+ICLDILR+ WS
Sbjct: 62 ------------------------YPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWS 97
Query: 121 PALTISKA 128
P +T+ A
Sbjct: 98 PVITLKSA 105
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 27/125 (21%)
Query: 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
++ ++ + L DPPA S P D++ W+A I GP ++P++ G F L++ F
Sbjct: 6 RRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEF------ 59
Query: 62 XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSP 121
+ +YP K P V F ++++HPN+ ++GSICLDIL+++WSP
Sbjct: 60 ---------------------TEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSP 98
Query: 122 ALTIS 126
++
Sbjct: 99 TYDVA 103
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 27/125 (21%)
Query: 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
++ ++ + L DPPA S P D++ W+A I GP ++P++ G F L++ F
Sbjct: 9 RRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEF------ 62
Query: 62 XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSP 121
+ +YP K P V F ++++HPN+ ++GSICLDIL+++WSP
Sbjct: 63 ---------------------TEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSP 101
Query: 122 ALTIS 126
++
Sbjct: 102 TYDVA 106
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 62/124 (50%), Gaps = 28/124 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXX 65
QKEL+D+ + + A + F W I GP +PY+GG F L I P D
Sbjct: 29 QKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPND------- 81
Query: 66 XXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALT 124
YP PK+ F T+I+HPNI+S G+ICLD+L+++WSPALT
Sbjct: 82 --------------------YPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALT 121
Query: 125 ISKA 128
I A
Sbjct: 122 IRTA 125
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 61/119 (51%), Gaps = 27/119 (22%)
Query: 7 KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
KE Q+L +PP A PV ++ H+ I GP +PY+GG + L + P
Sbjct: 8 KETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLP---------- 57
Query: 67 XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
+YP++ PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I
Sbjct: 58 -----------------EQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQI 99
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 61/119 (51%), Gaps = 27/119 (22%)
Query: 7 KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
KE Q+L +PP A PV ++ H+ I GP +PY+GG + L + P
Sbjct: 8 KETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLP---------- 57
Query: 67 XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
+YP++ PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I
Sbjct: 58 -----------------EQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQI 99
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 29/128 (22%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
K KE+Q + DP A + V + D+ H + T +GPP +PY+GG F + I P +
Sbjct: 4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME--- 60
Query: 62 XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWS 120
YP K PK+ F T++YHPNI+S G+ICLDIL++ WS
Sbjct: 61 ------------------------YPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWS 96
Query: 121 PALTISKA 128
P +T+ A
Sbjct: 97 PVITLKSA 104
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 61/119 (51%), Gaps = 27/119 (22%)
Query: 7 KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
KE + L DP +A P D+L ++Q TI GP SPY+ G+F L ++ P D
Sbjct: 10 KETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD-------- 61
Query: 67 XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
YP++ PKV F T+IYHP I+ G I LD+L++ WSPAL I
Sbjct: 62 -------------------YPMEAPKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQI 101
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 27/125 (21%)
Query: 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
++ ++ + L DPP S P +++ W A I GP +P++ G F L I F
Sbjct: 6 RRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEF------ 59
Query: 62 XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSP 121
S +YP K P V F ++++HPN+ ++GSICLDIL+++WSP
Sbjct: 60 ---------------------SEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSP 98
Query: 122 ALTIS 126
+S
Sbjct: 99 TYDVS 103
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 27/125 (21%)
Query: 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
++ ++ + + D P SA P+ D++ W A I+GP D+PY+ G F L + F
Sbjct: 6 RRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEF------ 59
Query: 62 XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSP 121
+YP K P V F + ++HPN+ +NG ICLDIL+++W+P
Sbjct: 60 ---------------------DEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTP 98
Query: 122 ALTIS 126
++
Sbjct: 99 TYDVA 103
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 57/119 (47%), Gaps = 27/119 (22%)
Query: 7 KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
KE Q L +P A P + ++ I GP DSP++GG F L + P +Y
Sbjct: 10 KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY------- 62
Query: 67 XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
P+ PKV F T+IYHPN++ G ICLDIL+ +WSPAL I
Sbjct: 63 --------------------PMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 101
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 57/119 (47%), Gaps = 27/119 (22%)
Query: 7 KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
KE Q L +P A P + ++ I GP DSP++GG F L + P +Y
Sbjct: 12 KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY------- 64
Query: 67 XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
P+ PKV F T+IYHPN++ G ICLDIL+ +WSPAL I
Sbjct: 65 --------------------PMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 103
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 57/119 (47%), Gaps = 27/119 (22%)
Query: 7 KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
KE Q L +P A P + ++ I GP DSP++GG F L + P +Y
Sbjct: 13 KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY------- 65
Query: 67 XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
P+ PKV F T+IYHPN++ G ICLDIL+ +WSPAL I
Sbjct: 66 --------------------PMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 104
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 57/119 (47%), Gaps = 27/119 (22%)
Query: 7 KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
KE Q L +P A P + ++ I GP DSP++GG F L + P +Y
Sbjct: 8 KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY------- 60
Query: 67 XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
P+ PKV F T+IYHPN++ G ICLDIL+ +WSPAL I
Sbjct: 61 --------------------PMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 99
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 57/119 (47%), Gaps = 27/119 (22%)
Query: 7 KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
KE Q L +P A P + ++ I GP DSP++GG F L + P +Y
Sbjct: 15 KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY------- 67
Query: 67 XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
P+ PKV F T+IYHPN++ G ICLDIL+ +WSPAL I
Sbjct: 68 --------------------PMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 106
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 56/110 (50%), Gaps = 28/110 (25%)
Query: 20 CSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPK 79
SA VG D+ W+ I GP +PY+GG F L I P D
Sbjct: 65 VSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPD--------------------- 103
Query: 80 VKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKA 128
YP PK+ F T+I+HPNI+S G+ICLDIL+ +WSPALTI A
Sbjct: 104 ------YPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTA 147
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 28/113 (24%)
Query: 6 QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXX 64
+++L +L ++P SAG + D DL+ W+ I+GPPD+ Y+GGVF + FP D
Sbjct: 23 RRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKD------ 76
Query: 65 XXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS 117
YPL+ PK+ F T I+HPN++ NG +C+ IL
Sbjct: 77 ---------------------YPLRPPKMKFITEIWHPNVDKNGDVCISILHE 108
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 27/125 (21%)
Query: 1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYX 60
+ K Q+EL+ L +A P GD+LF W AT+ GP D+ Y+ + LT+ FP+DY
Sbjct: 10 VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDY- 68
Query: 61 XXXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWS 120
P K P V FTT +HPN++ +G+ICLDIL+ W+
Sbjct: 69 --------------------------PYKPPVVKFTTPCWHPNVDQSGNICLDILKENWT 102
Query: 121 PALTI 125
+ +
Sbjct: 103 ASYDV 107
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 61/140 (43%), Gaps = 41/140 (29%)
Query: 2 KKNKQKELQDLGRDPPAQCSAGPVGDD-LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYX 60
+K KELQ L +D P AGP ++ +F W I GPPD+PY GVF + FP DY
Sbjct: 6 QKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDY- 64
Query: 61 XXXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS--- 117
PL PK+ FT I HPNI NG +C+ IL S
Sbjct: 65 --------------------------PLSPPKLTFTPSILHPNIYPNGEVCISILHSPGD 98
Query: 118 ----------QWSPALTISK 127
+WSP ++ K
Sbjct: 99 DPNMYELAEERWSPVQSVEK 118
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 28/111 (25%)
Query: 6 QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXX 64
+K+L D+ R P SAG V D D++ W+ ++GPPD+ Y+GG F + FP
Sbjct: 9 KKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFP-------- 60
Query: 65 XXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDIL 115
R YP K PK+ F + I+HPNI+ G++C+ IL
Sbjct: 61 -------------------RDYPQKPPKMKFISEIWHPNIDKEGNVCISIL 92
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 52/108 (48%), Gaps = 28/108 (25%)
Query: 19 QCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQP 78
Q V ++ + I GPPD+PY+GG + L I P
Sbjct: 79 QIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP---------------------- 116
Query: 79 KVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTI 125
YP PKV F T+I+HPNI+S G+ICLDIL+ QW+ A+T+
Sbjct: 117 -----ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTL 159
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 28/124 (22%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K + KE+ Q V ++ + I GPPD+PY+GG + L I P
Sbjct: 12 KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP------ 65
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSP 121
YP PKV F T+I+HPNI+S G+ICLDIL+ QW+
Sbjct: 66 ---------------------ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 104
Query: 122 ALTI 125
A+T+
Sbjct: 105 AMTL 108
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 28/124 (22%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K + KE+ Q V ++ + I GPPD+PY+GG + L I P
Sbjct: 11 KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP------ 64
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSP 121
YP PKV F T+I+HPNI+S G+ICLDIL+ QW+
Sbjct: 65 ---------------------ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 103
Query: 122 ALTI 125
A+T+
Sbjct: 104 AMTL 107
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 28/124 (22%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K + KE+ Q V ++ + I GPPD+PY+GG + L I P
Sbjct: 27 KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP------ 80
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSP 121
YP PKV F T+I+HPNI+S G+ICLDIL+ QW+
Sbjct: 81 ---------------------ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 119
Query: 122 ALTI 125
A+T+
Sbjct: 120 AMTL 123
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 52/108 (48%), Gaps = 28/108 (25%)
Query: 19 QCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQP 78
Q V ++ + I GPPD+PY+GG + L I P
Sbjct: 30 QIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP---------------------- 67
Query: 79 KVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTI 125
YP PKV F T+I+HPNI+S G+ICLDIL+ QW+ A+T+
Sbjct: 68 -----ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTL 110
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 27/119 (22%)
Query: 7 KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
KE+ L DPP P +DL Q TI GP +PY GG+F +
Sbjct: 20 KEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRM--------------- 64
Query: 67 XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
K+ + + +P PK F T+I+HPN+ +NG IC+++L+ W+ L I
Sbjct: 65 ------------KLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGI 111
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 41/139 (29%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDD-LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
K E + L +PP AGP+ ++ F W+A IMGP D+ ++ GVF + FP DY
Sbjct: 6 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY-- 63
Query: 62 XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS---- 117
PL PK+ FT ++HPNI +G +C+ IL +
Sbjct: 64 -------------------------PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDD 98
Query: 118 ---------QWSPALTISK 127
+WSP ++ K
Sbjct: 99 PMGYESSAERWSPVQSVEK 117
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 41/139 (29%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDD-LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
K E + L +PP AGP+ ++ F W+A IMGP D+ ++ GVF + FP DY
Sbjct: 9 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY-- 66
Query: 62 XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS---- 117
PL PK+ FT ++HPNI +G +C+ IL +
Sbjct: 67 -------------------------PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDD 101
Query: 118 ---------QWSPALTISK 127
+WSP ++ K
Sbjct: 102 PMGYESSAERWSPVQSVEK 120
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 41/139 (29%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDD-LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
K E + L +PP AGP+ ++ F W+A IMGP D+ ++ GVF + FP DY
Sbjct: 12 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY-- 69
Query: 62 XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS---- 117
PL PK+ FT ++HPNI +G +C+ IL +
Sbjct: 70 -------------------------PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDD 104
Query: 118 ---------QWSPALTISK 127
+WSP ++ K
Sbjct: 105 PMGYESSAERWSPVQSVEK 123
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 41/139 (29%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDD-LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXX 61
K E + L +PP AGP+ ++ F W+A IMGP D+ ++ GVF + FP DY
Sbjct: 10 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY-- 67
Query: 62 XXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS---- 117
PL PK+ FT ++HPNI +G +C+ IL +
Sbjct: 68 -------------------------PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDD 102
Query: 118 ---------QWSPALTISK 127
+WSP ++ K
Sbjct: 103 PMGYESSAERWSPVQSVEK 121
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 31/125 (24%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXX 65
++EL L +PP + D + +A I+G ++PY+ GVF L + P
Sbjct: 10 KRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIP--------- 60
Query: 66 XXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDIL----RSQWSP 121
+YP + P++ F T IYHPNI+S G ICLD+L + W P
Sbjct: 61 ------------------ERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRP 102
Query: 122 ALTIS 126
+L I+
Sbjct: 103 SLNIA 107
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 34/133 (25%)
Query: 2 KKNKQKELQDLGRDPP-----AQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFP 56
K Q+E + RD P C + G DL +W+ I G P + ++GG++ LT+ FP
Sbjct: 12 KTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFP 71
Query: 57 TDYXXXXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR 116
+Y P + PK FT ++HPN+ +G++CL IL
Sbjct: 72 EEY---------------------------PTRPPKCRFTPPLFHPNVYPSGTVCLSILN 104
Query: 117 SQ--WSPALTISK 127
+ W PA+TI +
Sbjct: 105 EEEGWKPAITIKQ 117
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 27/118 (22%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXX 62
K Q+EL L SA P D+LF W TI G + Y+ + L++ FP+ Y
Sbjct: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGY--- 89
Query: 63 XXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWS 120
P P V F T YHPN+++ G+I LDIL+ +WS
Sbjct: 90 ------------------------PYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWS 123
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 30/118 (25%)
Query: 7 KELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXX 65
KEL+DL + PP D ++ W A ++ P PY F L I FP +
Sbjct: 8 KELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPE------- 59
Query: 66 XXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPA 122
YP K P + FTT+IYHPN++ NG ICL I+ S+ W P
Sbjct: 60 --------------------YPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPC 97
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 30/118 (25%)
Query: 7 KELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXX 65
KEL+DL + PP D ++ W A ++ P PY F L I FP +
Sbjct: 11 KELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPE------- 62
Query: 66 XXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPA 122
YP K P + FTT+IYHPN++ NG ICL I+ S+ W P
Sbjct: 63 --------------------YPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPC 100
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 54/129 (41%), Gaps = 31/129 (24%)
Query: 1 MKKNKQKELQDLGRDPP--AQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTD 58
M+K QKEL L DPP + V + + W + G P + Y+G F L F
Sbjct: 23 MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF--- 79
Query: 59 YXXXXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRI--YHPNINSNGSICLDILR 116
S +YP P+V FT HP++ SNG ICL IL
Sbjct: 80 ------------------------SSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILT 115
Query: 117 SQWSPALTI 125
WSPAL++
Sbjct: 116 EDWSPALSV 124
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 29/96 (30%)
Query: 28 DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
+L WQ I+ P + PY G F + I+FP +Y P
Sbjct: 33 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEY---------------------------P 64
Query: 88 LKLPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPA 122
K PK+ F T+IYHPNI+ G +CL ++ ++ W PA
Sbjct: 65 FKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPA 100
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 29/96 (30%)
Query: 28 DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
+L WQ I+ P + PY G F + I+FP +Y P
Sbjct: 31 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEY---------------------------P 62
Query: 88 LKLPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPA 122
K PK+ F T+IYHPNI+ G +CL ++ ++ W PA
Sbjct: 63 FKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPA 98
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 34/129 (26%)
Query: 6 QKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYX 60
Q+E + +D P A PV DL W+A I G + + GGV+ +T+ +P +Y
Sbjct: 12 QEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEY- 70
Query: 61 XXXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS--Q 118
P K PKV F YHPN+ +G+ICL IL
Sbjct: 71 --------------------------PSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQD 104
Query: 119 WSPALTISK 127
W PA+T+ +
Sbjct: 105 WRPAITLKQ 113
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 34/129 (26%)
Query: 6 QKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYX 60
Q+E + +D P A PV DL W+A I G + + GGV+ +T+ +P +Y
Sbjct: 10 QEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEY- 68
Query: 61 XXXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS--Q 118
P K PKV F YHPN+ +G+ICL IL
Sbjct: 69 --------------------------PSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQD 102
Query: 119 WSPALTISK 127
W PA+T+ +
Sbjct: 103 WRPAITLKQ 111
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 28/109 (25%)
Query: 8 ELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
EL+ L +P V + DL++W+ I GPP++ Y+GG F + FP D
Sbjct: 12 ELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID-------- 63
Query: 67 XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDIL 115
YP P F T+++HPNI G +C+ IL
Sbjct: 64 -------------------YPYSPPAFRFLTKMWHPNIYETGDVCISIL 93
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 28/109 (25%)
Query: 8 ELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXX 66
EL+ L +P V + DL++W+ I GPP++ Y+GG F + FP D
Sbjct: 15 ELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID-------- 66
Query: 67 XXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDIL 115
YP P F T+++HPNI G +C+ IL
Sbjct: 67 -------------------YPYSPPAFRFLTKMWHPNIYETGDVCISIL 96
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%)
Query: 81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTIS 126
KV + YP PKV T +YHPNI+ G++CL+ILR W P LTI+
Sbjct: 58 KVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTIN 103
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 86 YPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
YP++ PKV +I+HPNI+ G++CL+ILR WSPAL +
Sbjct: 92 YPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDL 131
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTIS 126
KV + YP PKV T +YHPNI+ G++ L+ILR W P LTI+
Sbjct: 78 KVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTIN 123
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 30/128 (23%)
Query: 1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYX 60
++ N+++E+ D R + P D + + GP +PY+ G + L + P+D
Sbjct: 11 LRSNRRREM-DYMRLCNSTRKVYP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSD-- 66
Query: 61 XXXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQW 119
YP K P + F RI HPN++ +GS+CLD++ W
Sbjct: 67 -------------------------YPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTW 101
Query: 120 SPALTISK 127
+P +
Sbjct: 102 TPMYQLEN 109
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 26/121 (21%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXX 65
QKEL + +PP C+ +++ W +G ++ Y V+ L I FP D
Sbjct: 12 QKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDD------- 64
Query: 66 XXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
YPLK P V +K P H ++ SNG ICL +L ++P+L+I
Sbjct: 65 -------YPLKPPIVYFLQKPP------------KHTHVYSNGDICLSLLGDDYNPSLSI 105
Query: 126 S 126
S
Sbjct: 106 S 106
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 29/102 (28%)
Query: 28 DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
+L +W+ I G +P++GG+F L + F DY P
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY---------------------------P 72
Query: 88 LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
PK F ++HPN+ +G++CL IL W PA+TI +
Sbjct: 73 SSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQ 114
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 29/102 (28%)
Query: 28 DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
+L +W+ I G +P++GG+F L + F DY P
Sbjct: 38 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY---------------------------P 70
Query: 88 LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
PK F ++HPN+ +G++CL IL W PA+TI +
Sbjct: 71 SSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 112
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 29/102 (28%)
Query: 28 DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
+L +W+ I G +P++GG+F L + F DY P
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY---------------------------P 71
Query: 88 LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
PK F ++HPN+ +G++CL IL W PA+TI +
Sbjct: 72 SSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 113
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 29/102 (28%)
Query: 28 DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
+L +W+ I G +P++GG+F L + F DY P
Sbjct: 42 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY---------------------------P 74
Query: 88 LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
PK F ++HPN+ +G++CL IL W PA+TI +
Sbjct: 75 SSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 116
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 29/102 (28%)
Query: 28 DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
+L +W+ I G +P++GG+F L + F DY P
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY---------------------------P 71
Query: 88 LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
PK F ++HPN+ +G++CL IL W PA+TI +
Sbjct: 72 SSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 113
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 29/102 (28%)
Query: 28 DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
+L +W+ I G +P++GG+F L + F DY P
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY---------------------------P 72
Query: 88 LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
PK F ++HPN+ +G++CL IL W PA+TI +
Sbjct: 73 SSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 114
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 29/102 (28%)
Query: 28 DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
+L +W+ I G +P++GG+F L + F DY P
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY---------------------------P 69
Query: 88 LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
PK F ++HPN+ +G++CL IL W PA+TI +
Sbjct: 70 SSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 111
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 29/102 (28%)
Query: 28 DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
+L +W+ I G +P++GG+F L + F DY P
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY---------------------------P 72
Query: 88 LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
PK F ++HPN+ +G++CL IL W PA+TI +
Sbjct: 73 SSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 114
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 29/102 (28%)
Query: 28 DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
+L +W+ I G +P++GG+F L + F DY P
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY---------------------------P 72
Query: 88 LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
PK F ++HPN+ +G++CL IL W PA+TI +
Sbjct: 73 SSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQ 114
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 26/121 (21%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXX 65
QKEL + ++PP C+ ++ W +G ++ Y V+ + I FP +Y
Sbjct: 26 QKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNY------ 79
Query: 66 XXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
PLK P V +K P H ++ SNG ICL +L ++P+L+I
Sbjct: 80 --------PLKPPIVYFLQKPP------------KHTHVYSNGDICLSVLGDDYNPSLSI 119
Query: 126 S 126
S
Sbjct: 120 S 120
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 28/84 (33%)
Query: 38 GPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTT 97
GP +PY+GGV+ + + P KYP K P + F
Sbjct: 59 GPQGTPYEGGVWKVRVDLPD---------------------------KYPFKSPSIGFMN 91
Query: 98 RIYHPNIN-SNGSICLDILRSQWS 120
+I+HPNI+ ++G++CLD++ W+
Sbjct: 92 KIFHPNIDEASGTVCLDVINQTWT 115
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 30/124 (24%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXX 65
++ DL + +A PV +D+ W+ I G +S +QG VF LTIHF ++Y
Sbjct: 29 HRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAP-- 86
Query: 66 XXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRS--QWSPA 122
P V F T +HPN++ G C+D L + +W+
Sbjct: 87 -------------------------PVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTN 121
Query: 123 LTIS 126
T+S
Sbjct: 122 YTLS 125
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 29/102 (28%)
Query: 28 DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
+L +W+ I G +P++GG+F L + F DY P
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY---------------------------P 72
Query: 88 LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
PK F ++HP + +G++CL IL W PA+TI +
Sbjct: 73 SSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQ 114
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 31/106 (29%)
Query: 21 SAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPK 79
S P+ + DL W+A I GP D+PY+ F + I P+
Sbjct: 38 SLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPS---------------------- 75
Query: 80 VKVSRKYPLKLPKVAFT-TRIYHPNINS-NGSICLDILR-SQWSPA 122
YP+ PK++F I H N+ S G ICL+IL+ +W+P
Sbjct: 76 -----SYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEWTPV 116
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 31/106 (29%)
Query: 21 SAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPK 79
S P+ + DL W+A I GP D+PY+ F + I P+
Sbjct: 38 SLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPS---------------------- 75
Query: 80 VKVSRKYPLKLPKVAFT-TRIYHPNINS-NGSICLDILR-SQWSPA 122
YP+ PK++F I H N+ S G ICL+IL+ +W+P
Sbjct: 76 -----SYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPV 116
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 31/106 (29%)
Query: 21 SAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPK 79
S P+ + DL W+A I GP D+PY+ F + I P+
Sbjct: 38 SLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPS---------------------- 75
Query: 80 VKVSRKYPLKLPKVAFT-TRIYHPNINS-NGSICLDILR-SQWSPA 122
YP+ PK++F I H N+ S G ICL+IL+ +W+P
Sbjct: 76 -----SYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPV 116
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 29/102 (28%)
Query: 28 DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
+L +W+ I G +P++GG+F L + F D YP
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDD---------------------------YP 69
Query: 88 LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
PK F ++HPN+ +G++ L IL W PA+TI +
Sbjct: 70 SSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQ 111
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 29/102 (28%)
Query: 28 DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYP 87
+L +W+ I G +P++GG+F L + F D YP
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDD---------------------------YP 69
Query: 88 LKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISK 127
PK F ++HPN+ +G++ L IL W PA+TI +
Sbjct: 70 SSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQ 111
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 34/100 (34%)
Query: 27 DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKY 86
D +FH GP + Y+GG++ + + P DY
Sbjct: 32 DVMFH------GPNGTAYEGGIWKVHVTLPDDY--------------------------- 58
Query: 87 PLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTI 125
P P + F ++ HPN++ ++GS+CLD++ W+P ++
Sbjct: 59 PFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSL 98
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 35/126 (27%)
Query: 7 KELQDLGRDPPAQCSAG-PVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXX 65
KE+ +L + P C P + L +Q T+ P + YQGG F
Sbjct: 21 KEVAELEANLPCTCKVHFPDPNKLHCFQLTVT-PDEGYYQGGKF---------------- 63
Query: 66 XXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ------W 119
Q + +V Y + PKV T+I+HPNI G ICL +LR W
Sbjct: 64 -----------QFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGW 112
Query: 120 SPALTI 125
+P T+
Sbjct: 113 APTRTL 118
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 35/126 (27%)
Query: 7 KELQDLGRDPPAQCSAG-PVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXX 65
KE+ +L + P C P + L +Q T+ P + YQGG F
Sbjct: 21 KEVAELEANLPCTCKVHFPDPNKLHCFQLTVT-PDEGYYQGGKF---------------- 63
Query: 66 XXXVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ------W 119
Q + +V Y + PKV T+I+HPNI G ICL +LR W
Sbjct: 64 -----------QFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGW 112
Query: 120 SPALTI 125
+P T+
Sbjct: 113 APTRTL 118
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 29/93 (31%)
Query: 36 IMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYPLKLPKVAF 95
I GP D+PY G F ++FP D YP P V L
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQD--------------YPSSPPLV--------NLETTGG 153
Query: 96 TTRIYHPNINSNGSICLDILRS-------QWSP 121
+ ++PN+ ++G +CL IL + +W+P
Sbjct: 154 HSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNP 186
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 36/120 (30%)
Query: 12 LGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSI 71
+ +DP A P+ ++ W + GP +PY+GG + + FP
Sbjct: 26 IKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFP--------------- 70
Query: 72 EYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPN--INSNGSICLDILR---SQWSPALTIS 126
R++P K P + T PN N +CL I W+PA ++S
Sbjct: 71 ------------REFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVS 114
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 29/97 (29%)
Query: 27 DDLFHWQATIMGPPDSPY--QGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSR 84
D +++W + P DS Y G + L++ F D
Sbjct: 47 DTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDD-------------------------- 80
Query: 85 KYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSP 121
YP + P V F T +Y P + G IC ++ W+P
Sbjct: 81 -YPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTP 116
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 34/116 (29%)
Query: 17 PAQCSAGPVGDD---LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEY 73
P CS G D + W TI+GPP S ++ ++ L+I
Sbjct: 24 PESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSI-------------------- 63
Query: 74 PLKQPKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDI--LRSQWSPALTIS 126
YP PKV F ++I P +N + G + D LR W A T+
Sbjct: 64 -------DCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLR-DWKRAYTME 111
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 34/116 (29%)
Query: 17 PAQCSAGPVGDD---LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEY 73
P CS G D + W TI+GPP S ++ ++ L+I
Sbjct: 23 PESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSI-------------------- 62
Query: 74 PLKQPKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDI--LRSQWSPALTIS 126
YP PKV F ++I P +N + G + D LR W A T+
Sbjct: 63 -------DCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLR-DWKRAYTME 110
>pdb|3RQ1|A Chain A, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|B Chain B, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|C Chain C, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|D Chain D, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
Length = 418
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 28 DLFHWQATIMGPPDSPYQGGVFFLTIHFPTD 58
D+F +A +G P PY+GG FF+TI PTD
Sbjct: 339 DIFKQEAAQVGLPXLPYRGG-FFITI--PTD 366
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 27/83 (32%)
Query: 29 LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYPL 88
L W I+GPP + Y+ ++ L KV+ KYP
Sbjct: 48 LTRWTGMIIGPPRTNYENRIYSL---------------------------KVECGPKYPE 80
Query: 89 KLPKVAFTTRIYHPNINSNGSIC 111
P V F T+I IN++ +
Sbjct: 81 APPSVRFVTKINMNGINNSSGMV 103
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 27/83 (32%)
Query: 29 LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYPL 88
L W I+GPP + Y+ ++ L KV+ KYP
Sbjct: 37 LTRWTGMIIGPPRTNYENRIYSL---------------------------KVECGPKYPE 69
Query: 89 KLPKVAFTTRIYHPNINSNGSIC 111
P V F T+I IN++ +
Sbjct: 70 APPSVRFVTKINMNGINNSSGMV 92
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 27/83 (32%)
Query: 29 LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYPL 88
L W I+GPP + Y+ ++ L KV+ KYP
Sbjct: 43 LTRWTGMIIGPPRTNYENRIYSL---------------------------KVECGPKYPE 75
Query: 89 KLPKVAFTTRIYHPNINSNGSIC 111
P V F T+I IN++ +
Sbjct: 76 APPSVRFVTKINMNGINNSSGMV 98
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 27/83 (32%)
Query: 29 LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYPL 88
L W I+GPP + Y+ ++ L KV+ KYP
Sbjct: 38 LTRWTGMIIGPPRTNYENRIYSL---------------------------KVECGPKYPE 70
Query: 89 KLPKVAFTTRIYHPNINSNGSIC 111
P V F T+I IN++ +
Sbjct: 71 APPSVRFVTKINMNGINNSSGMV 93
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 27/83 (32%)
Query: 29 LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYPL 88
L W I+GPP + Y+ ++ L K++ KYP
Sbjct: 40 LTRWTGMILGPPRTIYENRIYSL---------------------------KIECGPKYPE 72
Query: 89 KLPKVAFTTRIYHPNINSNGSIC 111
P V F T+I +NS+ +
Sbjct: 73 APPFVRFVTKINMNGVNSSNGVV 95
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 27/82 (32%)
Query: 29 LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYPL 88
L W I+GPP + Y+ ++ L K++ KYP
Sbjct: 68 LTRWTGMIIGPPRTIYENRIYSL---------------------------KIECGPKYPE 100
Query: 89 KLPKVAFTTRIYHPNINSNGSI 110
P V F T+I +NS+ +
Sbjct: 101 APPFVRFVTKINMNGVNSSNGV 122
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 9 LQDLGRDPPAQCSAG-----PVGDD--LFHWQATIMGPPDSPYQGGVFFLTIHFPTDY 59
L +L R S G DD L +W TI G P + ++ ++ LTI +Y
Sbjct: 27 LDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNY 84
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 9 LQDLGRDPPAQCSAG-----PVGDD--LFHWQATIMGPPDSPYQGGVFFLTIHFPTDY 59
L +L R S G DD L +W TI G P + ++ ++ LTI +Y
Sbjct: 31 LDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNY 88
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 27/83 (32%)
Query: 29 LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYXXXXXXXXXVSIEYPLKQPKVKVSRKYPL 88
L W I+GPP + Y+ ++ L K++ KYP
Sbjct: 58 LTRWTGMIIGPPRTIYENRIYSL---------------------------KIECGPKYPE 90
Query: 89 KLPKVAFTTRIYHPNINSNGSIC 111
P V F T+I +NS+ +
Sbjct: 91 APPFVRFVTKINMNGVNSSNGVV 113
>pdb|1OGY|B Chain B, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|D Chain D, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|F Chain F, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|H Chain H, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|J Chain J, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|L Chain L, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|N Chain N, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|P Chain P, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
Length = 130
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWS 120
+V R YP + P + + Y ++N+N CL+ R Q+S
Sbjct: 30 RVGRNYPEQPPVIPHSIEGYQLSVNANR--CLECHRRQYS 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,943,225
Number of Sequences: 62578
Number of extensions: 137385
Number of successful extensions: 424
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 132
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)