Query psy4279
Match_columns 129
No_of_seqs 152 out of 1040
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 21:30:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fo3_A Ubiquitin-conjugating e 100.0 5.7E-39 2E-43 229.4 10.8 101 1-128 7-108 (125)
2 2r0j_A Ubiquitin carrier prote 100.0 1.9E-38 6.4E-43 232.5 10.7 101 1-128 2-102 (149)
3 2h2y_A Ubiquitin-conjugating e 100.0 2.7E-38 9.4E-43 229.0 10.7 100 2-128 22-122 (136)
4 4gpr_A Ubiquitin-conjugating e 100.0 4.4E-38 1.5E-42 231.0 10.5 101 1-128 5-105 (151)
5 2a7l_A Hypothetical ubiquitin- 100.0 3.4E-38 1.1E-42 229.0 9.8 100 2-128 24-127 (136)
6 2c2v_B Ubiquitin-conjugating e 100.0 3.1E-38 1.1E-42 232.6 9.7 101 1-128 6-106 (154)
7 1z2u_A Ubiquitin-conjugating e 100.0 5.6E-38 1.9E-42 230.0 10.0 100 2-128 6-105 (150)
8 2ayv_A Ubiquitin-conjugating e 100.0 9.3E-38 3.2E-42 233.0 10.7 100 2-128 23-122 (166)
9 1jat_A Ubiquitin-conjugating e 100.0 9.5E-38 3.2E-42 230.1 10.5 101 1-128 6-106 (155)
10 2c4o_A Ubiquitin-conjugating e 100.0 1.2E-37 4.1E-42 232.1 10.8 100 2-128 21-120 (165)
11 1ayz_A UBC2, ubiquitin-conjuga 100.0 9E-38 3.1E-42 233.7 9.9 100 2-128 6-105 (169)
12 1zdn_A Ubiquitin-conjugating e 100.0 8.9E-38 3E-42 231.0 9.3 100 2-128 15-114 (158)
13 2e2c_A Ubiquitin conjugating e 100.0 1.3E-37 4.3E-42 229.6 9.9 100 2-128 11-110 (156)
14 2aak_A UBC1, ubiquitin conjuga 100.0 1.7E-37 5.7E-42 228.0 10.0 100 2-128 6-105 (152)
15 1fxt_A Ubiquitin-conjugating e 100.0 1E-37 3.4E-42 228.5 8.5 101 1-128 2-104 (149)
16 3h8k_A Ubiquitin-conjugating e 100.0 2.8E-37 9.5E-42 229.1 10.6 101 1-128 4-118 (164)
17 1yh2_A HSPC150 protein similar 100.0 3.2E-37 1.1E-41 230.3 10.6 100 2-128 6-109 (169)
18 2ucz_A UBC7, ubiquitin conjuga 100.0 4.1E-37 1.4E-41 228.5 10.6 100 2-128 6-119 (165)
19 1i7k_A Ubiquitin-conjugating e 100.0 2.9E-37 1E-41 233.0 9.1 100 2-128 32-131 (179)
20 3rcz_B SUMO-conjugating enzyme 100.0 6.4E-37 2.2E-41 227.9 9.2 101 1-128 11-118 (163)
21 3bzh_A Ubiquitin-conjugating e 100.0 1.1E-36 3.7E-41 232.5 10.6 100 2-128 50-149 (194)
22 2awf_A Ubiquitin-conjugating e 100.0 1.8E-36 6E-41 227.1 11.4 101 1-128 18-132 (172)
23 3rz3_A Ubiquitin-conjugating e 100.0 1.9E-36 6.5E-41 228.8 10.3 100 2-128 9-122 (183)
24 2bep_A Ubiquitin-conjugating e 100.0 1.9E-36 6.5E-41 223.9 10.0 100 2-128 10-113 (159)
25 1yrv_A Ubiquitin-conjugating l 100.0 8.7E-37 3E-41 228.4 7.7 100 2-128 25-127 (169)
26 2pwq_A Ubiquitin conjugating e 100.0 1.2E-36 3.9E-41 235.7 8.0 100 2-128 25-125 (216)
27 2f4z_A Tgtwinscan_2721 - E2 do 100.0 2.7E-36 9.3E-41 230.1 9.7 100 2-128 34-147 (193)
28 2gjd_A Ubiquitin-conjugating e 100.0 2.5E-36 8.6E-41 223.0 8.9 100 2-128 6-112 (157)
29 1wzv_A Ubiquitin-conjugating e 100.0 4.9E-36 1.7E-40 220.8 9.8 100 1-128 5-106 (155)
30 3k9o_A Ubiquitin-conjugating e 100.0 8E-36 2.7E-40 228.0 10.9 101 1-128 6-110 (201)
31 2grr_A Ubiquitin-conjugating e 100.0 6.6E-36 2.3E-40 221.5 8.6 100 2-128 9-115 (161)
32 1y8x_A Ubiquitin-conjugating e 100.0 1.3E-35 4.6E-40 220.0 9.1 97 2-128 8-105 (160)
33 2a4d_A Ubiquitin-conjugating e 100.0 2.8E-35 9.5E-40 218.9 10.6 100 2-128 27-133 (160)
34 1tte_A Ubiquitin-conjugating e 100.0 5.4E-36 1.8E-40 231.8 4.9 101 1-128 3-105 (215)
35 2nvu_C NEDD8-conjugating enzym 100.0 3.3E-35 1.1E-39 221.8 8.3 97 2-128 28-125 (180)
36 2onu_A Ubiquitin-conjugating e 100.0 8.9E-36 3E-40 219.3 5.0 98 1-128 3-101 (152)
37 1c4z_D UBCH7, ubiquitin conjug 100.0 3.6E-35 1.2E-39 215.9 8.2 100 1-128 3-104 (154)
38 4ds2_A Ubiquitin-conjugating e 100.0 1.8E-35 6E-40 220.4 6.4 101 1-128 9-123 (167)
39 3fn1_B NEDD8-conjugating enzym 100.0 8.9E-35 3E-39 216.3 9.7 99 2-128 16-121 (167)
40 3e46_A Ubiquitin-conjugating e 100.0 9.5E-35 3.2E-39 229.6 10.0 100 2-128 59-162 (253)
41 2q0v_A Ubiquitin-conjugating e 100.0 1.5E-34 5.1E-39 214.0 9.6 99 2-128 23-128 (156)
42 1jat_B Ubiquitin-conjugating e 100.0 1.4E-34 4.7E-39 209.7 9.1 99 2-128 8-113 (138)
43 2hlw_A Ubiquitin-conjugating e 100.0 7.5E-35 2.6E-39 218.3 7.8 100 2-128 37-143 (170)
44 2y9m_A Ubiquitin-conjugating e 100.0 2E-34 6.8E-39 215.9 9.7 100 2-128 8-122 (172)
45 4ddg_A Ubiquitin-conjugating e 100.0 4.7E-34 1.6E-38 237.1 9.9 101 1-128 4-104 (399)
46 2z5d_A Ubiquitin-conjugating e 100.0 1.3E-34 4.5E-39 218.7 5.6 96 2-128 27-123 (179)
47 2f4w_A Ubiquitin-conjugating e 100.0 1E-33 3.5E-38 214.7 9.6 98 2-128 16-116 (187)
48 1yf9_A Ubiquitin carrier prote 100.0 6.1E-34 2.1E-38 213.3 7.6 96 2-128 14-110 (171)
49 3o2u_A NEDD8-conjugating enzym 100.0 1.2E-33 4.1E-38 214.8 8.5 97 2-128 31-134 (190)
50 1zuo_A Hypothetical protein LO 100.0 5.9E-34 2E-38 216.0 5.3 100 2-128 29-145 (186)
51 3ceg_A Baculoviral IAP repeat- 100.0 5.7E-32 1.9E-36 220.0 9.6 100 2-128 78-194 (323)
52 2z6o_A UFM1-conjugating enzyme 99.9 1E-27 3.4E-32 179.1 -0.4 94 2-128 34-142 (172)
53 3kpa_A Probable ubiquitin fold 99.7 1.3E-18 4.4E-23 128.1 -0.5 87 2-124 36-133 (168)
54 3r3q_A Suppressor protein STP2 99.6 2.3E-16 7.9E-21 117.3 6.3 98 3-128 31-146 (162)
55 3obq_A Tumor susceptibility ge 99.3 8.1E-13 2.8E-17 96.7 4.4 91 4-128 24-128 (146)
56 2ebm_A RWD domain-containing p 95.4 0.079 2.7E-06 36.2 7.7 60 3-64 13-72 (128)
57 2day_A Ring finger protein 25; 95.4 0.14 4.6E-06 35.0 8.8 62 3-64 11-76 (128)
58 2yz0_A Serine/threonine-protei 94.1 0.45 1.6E-05 32.8 8.8 60 4-64 14-79 (138)
59 2ebk_A RWD domain-containing p 92.3 0.4 1.4E-05 32.7 6.3 63 2-65 9-74 (128)
60 1ukx_A GCN2, GCN2 EIF2alpha ki 90.8 1.3 4.4E-05 30.2 7.6 62 3-64 13-80 (137)
61 3zqs_A E3 ubiquitin-protein li 87.8 2.2 7.4E-05 31.8 7.3 52 3-64 4-55 (186)
62 2dax_A Protein C21ORF6; RWD do 74.8 2.2 7.6E-05 29.8 3.0 17 48-64 74-90 (152)
63 2daw_A RWD domain containing p 74.6 3.2 0.00011 29.3 3.8 17 48-64 76-92 (154)
64 3u3c_B Paxillin LD2 peptide; 4 40.2 17 0.00059 18.1 1.7 18 3-20 8-25 (26)
65 2jrw_A Cyclic extended PEP.1; 28.1 13 0.00043 18.6 0.0 17 87-103 4-20 (26)
No 1
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=5.7e-39 Score=229.37 Aligned_cols=101 Identities=35% Similarity=0.672 Sum_probs=96.7
Q ss_pred ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279 1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV 80 (129)
Q Consensus 1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~ 80 (129)
+.+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 7 a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP---------------- 70 (125)
T 2fo3_A 7 ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPP---------------- 70 (125)
T ss_dssp --CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC----------------
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCC----------------
Confidence 3589999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCeEEeeecc-ccceecCCCcEEeccCCCCcccccCcccc
Q psy4279 81 KVSRKYPLKLPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 81 ~~~~~~~~~~p~v~f~t~i-~HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++ +||||+++|+||+|+|+++|+|++||++|
T Consensus 71 -----------~v~f~t~i~~HPnv~~~G~iCl~iL~~~W~P~~~i~~v 108 (125)
T 2fo3_A 71 -----------IVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGL 108 (125)
T ss_dssp -----------EEEECSSCCCBTTBCTTSBBCCGGGTTTCCTTCCHHHH
T ss_pred -----------EEEEeCCCCCCCcCCCCCEEEchhcCCCCCCCCcHHHH
Confidence 99999996 99999999999999999999999999876
No 2
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=1.9e-38 Score=232.52 Aligned_cols=101 Identities=46% Similarity=0.916 Sum_probs=98.4
Q ss_pred ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279 1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV 80 (129)
Q Consensus 1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~ 80 (129)
+.|||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP---------------- 65 (149)
T 2r0j_A 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPP---------------- 65 (149)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC----------------
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCC----------------
Confidence 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279 81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|+++||||+.+|+||+|+|+++|+|++||++|
T Consensus 66 -----------~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~v 102 (149)
T 2r0j_A 66 -----------KVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTV 102 (149)
T ss_dssp -----------EEEECSCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHH
T ss_pred -----------eeEeccCCccCCCCCCCEEechhcCCCCCCCCcHHHH
Confidence 9999999999999999999999999999999999876
No 3
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=2.7e-38 Score=229.00 Aligned_cols=100 Identities=33% Similarity=0.671 Sum_probs=97.2
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK 81 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~ 81 (129)
.+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 22 ~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP----------------- 84 (136)
T 2h2y_A 22 NYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPP----------------- 84 (136)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-----------------
T ss_pred HHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCC-----------------
Confidence 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeEEeeecc-ccceecCCCcEEeccCCCCcccccCcccc
Q psy4279 82 VSRKYPLKLPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 82 ~~~~~~~~~p~v~f~t~i-~HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++ +||||+.+|+||+|+|+++|+|++||++|
T Consensus 85 ----------~v~f~t~i~~HPnv~~~G~ICl~iL~~~WsP~~ti~~v 122 (136)
T 2h2y_A 85 ----------IVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGL 122 (136)
T ss_dssp ----------EEEECSSCCCCTTBCTTCCBCCGGGTTTCCTTCCHHHH
T ss_pred ----------EEEEeCCCCCCCcCCCCCEEECccccCCCCCCCcHHHH
Confidence 99999996 99999999999999999999999999876
No 4
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=4.4e-38 Score=231.00 Aligned_cols=101 Identities=67% Similarity=1.335 Sum_probs=98.3
Q ss_pred ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279 1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV 80 (129)
Q Consensus 1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~ 80 (129)
+.|||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 5 a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP---------------- 68 (151)
T 4gpr_A 5 AMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAP---------------- 68 (151)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCC----------------
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcc----------------
Confidence 3699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279 81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|+++||||+++|+||+++|+++|+|++||++|
T Consensus 69 -----------~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~v 105 (151)
T 4gpr_A 69 -----------RVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRV 105 (151)
T ss_dssp -----------EEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred -----------eeEEecCcccceECCCCEEEcccccCCCCCCCcHHHH
Confidence 9999999999999999999999999999999999876
No 5
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.4e-38 Score=228.98 Aligned_cols=100 Identities=40% Similarity=0.784 Sum_probs=96.4
Q ss_pred hHHHHHHHHHhhcCCCCCeEEE--EcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAG--PVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK 79 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~--p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~ 79 (129)
+|||+||+++|++++++|+.+. +.++|+++|+++|.||+|||||||.|+++|.||++||++||
T Consensus 24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP--------------- 88 (136)
T 2a7l_A 24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSP--------------- 88 (136)
T ss_dssp CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCC---------------
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCC---------------
Confidence 4899999999999999999965 88899999999999999999999999999999999999999
Q ss_pred cccccccCCCCCeEEeeeccc--cceecCCCcEEeccCCCCcccccCcccc
Q psy4279 80 VKVSRKYPLKLPKVAFTTRIY--HPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 80 ~~~~~~~~~~~p~v~f~t~i~--HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|+++ ||||+.+|+||+|+|+++|+|++||++|
T Consensus 89 ------------~v~F~T~i~~~HPNV~~~G~ICL~iL~~~WsP~~ti~~v 127 (136)
T 2a7l_A 89 ------------QVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSV 127 (136)
T ss_dssp ------------EEEEESSCCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHH
T ss_pred ------------EEEEeCCCcCCCccCCCCCeEEchhcCCCCCCCCcHHHH
Confidence 999999999 9999999999999999999999999876
No 6
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.1e-38 Score=232.59 Aligned_cols=101 Identities=43% Similarity=0.815 Sum_probs=98.2
Q ss_pred ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279 1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV 80 (129)
Q Consensus 1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~ 80 (129)
+.+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 6 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP---------------- 69 (154)
T 2c2v_B 6 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP---------------- 69 (154)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC----------------
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCC----------------
Confidence 4689999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279 81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+.+|+||+|+|+++|+|++||++|
T Consensus 70 -----------~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~v 106 (154)
T 2c2v_B 70 -----------KVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTV 106 (154)
T ss_dssp -----------EEEECSCCCCTTBCTTCBBCCHHHHTSCCTTCCHHHH
T ss_pred -----------EEEeecCcccCcCccCCeEEchhccCCCCCCCcHHHH
Confidence 9999999999999999999999999999999999876
No 7
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=5.6e-38 Score=230.02 Aligned_cols=100 Identities=95% Similarity=1.575 Sum_probs=97.7
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK 81 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~ 81 (129)
.|||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 6 ~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP----------------- 68 (150)
T 1z2u_A 6 LKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPP----------------- 68 (150)
T ss_dssp HHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC-----------------
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCc-----------------
Confidence 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279 82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|+++||||+.+|+||+++|+++|+|++||++|
T Consensus 69 ----------~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~v 105 (150)
T 1z2u_A 69 ----------KVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKV 105 (150)
T ss_dssp ----------EEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred ----------EEEEecCcccCcCCCCCeEeeccccCCCCCCCCHHHH
Confidence 9999999999999999999999999999999999876
No 8
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=9.3e-38 Score=233.04 Aligned_cols=100 Identities=79% Similarity=1.438 Sum_probs=97.7
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK 81 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~ 81 (129)
.+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 23 ~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP----------------- 85 (166)
T 2ayv_A 23 LKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPP----------------- 85 (166)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC-----------------
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCc-----------------
Confidence 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279 82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+.+|+||+|+|+++|+|++||++|
T Consensus 86 ----------~V~F~T~i~HPNI~~~G~ICL~iL~~~WsP~~ti~~v 122 (166)
T 2ayv_A 86 ----------KVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKV 122 (166)
T ss_dssp ----------EEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred ----------eeeeccCCcCCcCCCCCeEEcccccccCCCCCcHHHH
Confidence 9999999999999999999999999999999999876
No 9
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=9.5e-38 Score=230.07 Aligned_cols=101 Identities=48% Similarity=0.863 Sum_probs=98.2
Q ss_pred ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279 1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV 80 (129)
Q Consensus 1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~ 80 (129)
+.+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 6 ~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP---------------- 69 (155)
T 1jat_A 6 LPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAP---------------- 69 (155)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCC----------------
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCC----------------
Confidence 4689999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279 81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+.+|+||+++|+++|+|++||++|
T Consensus 70 -----------~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~v 106 (155)
T 1jat_A 70 -----------KVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTV 106 (155)
T ss_dssp -----------EEEECSCCCBTTBCTTCCBCCGGGTTTCCTTCCHHHH
T ss_pred -----------cceeecccccCCCCCCCEEEchhhccCCCCCCCHHHH
Confidence 9999999999999999999999999999999999876
No 10
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=1.2e-37 Score=232.10 Aligned_cols=100 Identities=91% Similarity=1.518 Sum_probs=97.7
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK 81 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~ 81 (129)
.|||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 21 ~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP----------------- 83 (165)
T 2c4o_A 21 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPP----------------- 83 (165)
T ss_dssp HHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC-----------------
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCC-----------------
Confidence 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279 82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+++|+||+|+|+++|+|++||++|
T Consensus 84 ----------~v~F~T~i~HPnV~~~G~ICl~iL~~~W~P~~ti~~v 120 (165)
T 2c4o_A 84 ----------KVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKV 120 (165)
T ss_dssp ----------EEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred ----------EEEEecCCcCCcCCCCCeEeehhhcCCCCCcCcHHHH
Confidence 9999999999999999999999999999999999876
No 11
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=9e-38 Score=233.71 Aligned_cols=100 Identities=38% Similarity=0.921 Sum_probs=97.7
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK 81 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~ 81 (129)
.+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 6 ~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP----------------- 68 (169)
T 1ayz_A 6 RRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPP----------------- 68 (169)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-----------------
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCC-----------------
Confidence 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279 82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+.+|+||+++|+++|+|++||++|
T Consensus 69 ----------~v~F~t~i~HPNI~~~G~ICl~iL~~~WsP~~~i~~v 105 (169)
T 1ayz_A 69 ----------HVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASI 105 (169)
T ss_dssp ----------EEEESSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHH
T ss_pred ----------ccccccCCccCCCCCCCeEeehhhccCCCCcCcHHHH
Confidence 9999999999999999999999999999999999876
No 12
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=8.9e-38 Score=231.00 Aligned_cols=100 Identities=38% Similarity=0.754 Sum_probs=97.6
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK 81 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~ 81 (129)
.|||+||+++|++++++|+.+.+.++|+++|+++|.||+||||+||.|+++|.||++||++||
T Consensus 15 ~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP----------------- 77 (158)
T 1zdn_A 15 IRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPP----------------- 77 (158)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-----------------
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCC-----------------
Confidence 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279 82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|+++||||+.+|+||+++|+++|+|++||++|
T Consensus 78 ----------~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~v 114 (158)
T 1zdn_A 78 ----------KGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHV 114 (158)
T ss_dssp ----------EEEESSCCCCTTBCTTSBBCHHHHTTTCCTTCCHHHH
T ss_pred ----------EEEeccCcccCCCCCCCEEehhhcCCCCCCCCcHHHH
Confidence 9999999999999999999999999999999999876
No 13
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-37 Score=229.62 Aligned_cols=100 Identities=43% Similarity=0.832 Sum_probs=97.5
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK 81 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~ 81 (129)
.+||+||+++|++++++|+.+.|.++|+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 11 ~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP----------------- 73 (156)
T 2e2c_A 11 SKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPP----------------- 73 (156)
T ss_dssp HHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC-----------------
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCC-----------------
Confidence 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279 82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|+++||||+.+|+||+++|+++|+|++||++|
T Consensus 74 ----------~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~v 110 (156)
T 2e2c_A 74 ----------VVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTI 110 (156)
T ss_dssp ----------EEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred ----------EEEEeCCcccCCCccCceEECccccccCCCCCcHHHH
Confidence 9999999999999999999999999999999999876
No 14
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=1.7e-37 Score=227.97 Aligned_cols=100 Identities=45% Similarity=0.987 Sum_probs=97.6
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK 81 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~ 81 (129)
.+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 6 ~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP----------------- 68 (152)
T 2aak_A 6 RKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPP----------------- 68 (152)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-----------------
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCC-----------------
Confidence 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279 82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|+++||||+.+|+||+++|+++|+|++||++|
T Consensus 69 ----------~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~v 105 (152)
T 2aak_A 69 ----------TVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAI 105 (152)
T ss_dssp ----------EEEESSCCCCTTBCTTSBBCCGGGTTSCCTTCCHHHH
T ss_pred ----------EEEEecCcccCCCCCCCEEechhhcCCCCCCCcHHHH
Confidence 9999999999999999999999999999999999876
No 15
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=1e-37 Score=228.49 Aligned_cols=101 Identities=48% Similarity=0.975 Sum_probs=97.6
Q ss_pred ChHHHHHHHHHhhcCCCCCeEEEEcCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279 1 MKKNKQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK 79 (129)
Q Consensus 1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~-nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~ 79 (129)
+.+||+||+++|++++++|+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP--------------- 66 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPP--------------- 66 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCC---------------
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCC---------------
Confidence 469999999999999999999999987 9999999999999999999999999999999999999
Q ss_pred cccccccCCCCCeEEeeeccccceecC-CCcEEeccCCCCcccccCcccc
Q psy4279 80 VKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 80 ~~~~~~~~~~~p~v~f~t~i~HPni~~-~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+. +|+||+++|+++|+|++||++|
T Consensus 67 ------------~v~f~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~v 104 (149)
T 1fxt_A 67 ------------KMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSA 104 (149)
T ss_dssp ------------EEEESSCCCBTTBCSSSCCBCCHHHHTSCCTTCCHHHH
T ss_pred ------------EEEEeCCCccCCCcCCCCeEeCCcCCCCCCCCCcHHHH
Confidence 999999999999998 9999999999999999999876
No 16
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=2.8e-37 Score=229.08 Aligned_cols=101 Identities=41% Similarity=0.883 Sum_probs=97.1
Q ss_pred ChHHHHHHHHHhhcCCCCCeEEEEcCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279 1 MKKNKQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK 79 (129)
Q Consensus 1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~-nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~ 79 (129)
+.|||+||+++|++++++|+++.+.++ |+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 4 a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP--------------- 68 (164)
T 3h8k_A 4 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPP--------------- 68 (164)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC---------------
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCC---------------
Confidence 369999999999999999999999876 9999999999999999999999999999999999999
Q ss_pred cccccccCCCCCeEEeeeccccceecCCCcEEeccCC-------------CCcccccCcccc
Q psy4279 80 VKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKA 128 (129)
Q Consensus 80 ~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~-------------~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+.+|+||+++|+ ++|+|++||++|
T Consensus 69 ------------~v~f~t~i~HPNV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~v 118 (164)
T 3h8k_A 69 ------------KMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKI 118 (164)
T ss_dssp ------------EEEECSCCCCTTBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHH
T ss_pred ------------EEEEcCCCccCCCCCCCcEeeecccCcccccccccccccCCCCCCcHHHH
Confidence 9999999999999999999999997 789999999876
No 17
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.2e-37 Score=230.32 Aligned_cols=100 Identities=40% Similarity=0.828 Sum_probs=97.5
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK 81 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~ 81 (129)
.+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 6 ~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP----------------- 68 (169)
T 1yh2_A 6 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPP----------------- 68 (169)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC-----------------
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCc-----------------
Confidence 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeEEeeeccccceecCCCcEEeccCC----CCcccccCcccc
Q psy4279 82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR----SQWSPALTISKA 128 (129)
Q Consensus 82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~----~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+.+|+||+|+|+ ++|+|++||++|
T Consensus 69 ----------~v~f~t~i~HPNv~~~G~iCl~iL~~~~~~~W~p~~~i~~v 109 (169)
T 1yh2_A 69 ----------QIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATV 109 (169)
T ss_dssp ----------EEEESSCCCBTTBCTTCBBCCGGGSCTTTSCCCTTSCHHHH
T ss_pred ----------EEEeecCCccccCCcCCeEecccccCCcccCCCCCCcHHHH
Confidence 9999999999999999999999998 899999999876
No 18
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=4.1e-37 Score=228.55 Aligned_cols=100 Identities=47% Similarity=0.971 Sum_probs=96.3
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcC-CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVG-DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV 80 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~-~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~ 80 (129)
.|||+||+++|++++++|+.+.+.+ +|+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 6 ~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP---------------- 69 (165)
T 2ucz_A 6 QKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPP---------------- 69 (165)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC----------------
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCC----------------
Confidence 5899999999999999999999976 79999999999999999999999999999999999999
Q ss_pred ccccccCCCCCeEEeeeccccceecCCCcEEeccC-------------CCCcccccCcccc
Q psy4279 81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDIL-------------RSQWSPALTISKA 128 (129)
Q Consensus 81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L-------------~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+++|+||+|+| .++|+|++||++|
T Consensus 70 -----------~v~f~t~i~HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~v 119 (165)
T 2ucz_A 70 -----------KLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKI 119 (165)
T ss_dssp -----------EEEESSCCSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHH
T ss_pred -----------EEEEeCCCccCCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHH
Confidence 999999999999999999999999 6789999999876
No 19
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.9e-37 Score=233.04 Aligned_cols=100 Identities=37% Similarity=0.688 Sum_probs=97.5
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK 81 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~ 81 (129)
.+||+||+++|++++++|+.+.|.++|+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 32 ~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP----------------- 94 (179)
T 1i7k_A 32 GKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAP----------------- 94 (179)
T ss_dssp HHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCC-----------------
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCc-----------------
Confidence 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279 82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+.+|+||+++|+++|+|++||++|
T Consensus 95 ----------~V~F~T~i~HPNV~~~G~ICL~iL~~~WsP~~ti~~v 131 (179)
T 1i7k_A 95 ----------TVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTI 131 (179)
T ss_dssp ----------EEEESSCCCSTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred ----------eEEEecCCccCccccCCeEEcccCcCcCCCCCCHHHH
Confidence 9999999999999999999999999999999999876
No 20
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=6.4e-37 Score=227.92 Aligned_cols=101 Identities=40% Similarity=0.855 Sum_probs=96.5
Q ss_pred ChHHHHHHHHHhhcCCCCCeEEEEcCC-----CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCC
Q psy4279 1 MKKNKQKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPL 75 (129)
Q Consensus 1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~-----nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~ 75 (129)
+++||+||+++|++++++|+.+.|.++ |+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 11 ~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP----------- 79 (163)
T 3rcz_B 11 CKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPP----------- 79 (163)
T ss_dssp HHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-----------
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCC-----------
Confidence 369999999999999999999999876 9999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCeEEeeeccccceecCCCcEEeccCCCC--cccccCcccc
Q psy4279 76 KQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKA 128 (129)
Q Consensus 76 ~~~~~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~--Wsp~~ti~~v 128 (129)
+|+|.|++|||||+++|+||+++|++. |+|++||++|
T Consensus 80 ----------------~v~F~t~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~v 118 (163)
T 3rcz_B 80 ----------------KCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQI 118 (163)
T ss_dssp ----------------EEEESSCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHH
T ss_pred ----------------EEEEeCCCccCCCCCCCcEeccccCCCCCcCCcCcHHHH
Confidence 999999999999999999999999864 9999999876
No 21
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=1.1e-36 Score=232.46 Aligned_cols=100 Identities=66% Similarity=1.236 Sum_probs=97.7
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK 81 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~ 81 (129)
.+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 50 ~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP----------------- 112 (194)
T 3bzh_A 50 AKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPP----------------- 112 (194)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-----------------
T ss_pred HHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCc-----------------
Confidence 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279 82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+.+|.|||++|+++|+|++||++|
T Consensus 113 ----------~V~F~T~i~HPNV~~~G~ICL~iL~~~WsP~~ti~~v 149 (194)
T 3bzh_A 113 ----------KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKV 149 (194)
T ss_dssp ----------EEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred ----------cccccCCCccceECCCCceechhhhccCCCcCcHHHH
Confidence 9999999999999999999999999999999999876
No 22
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=1.8e-36 Score=227.15 Aligned_cols=101 Identities=41% Similarity=0.930 Sum_probs=96.7
Q ss_pred ChHHHHHHHHHhhcCCCCCeEEEEcC-CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279 1 MKKNKQKELQDLGRDPPAQCSAGPVG-DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK 79 (129)
Q Consensus 1 ~~rRL~kEl~~l~~~~~~~~~~~p~~-~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~ 79 (129)
+.|||+||+++|++++++|+.+.+.+ +|+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 18 ~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP--------------- 82 (172)
T 2awf_A 18 GSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPP--------------- 82 (172)
T ss_dssp THHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC---------------
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCC---------------
Confidence 46999999999999999999999876 79999999999999999999999999999999999999
Q ss_pred cccccccCCCCCeEEeeeccccceecCCCcEEeccCC-------------CCcccccCcccc
Q psy4279 80 VKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKA 128 (129)
Q Consensus 80 ~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~-------------~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+.+|+||+++|+ ++|+|++||++|
T Consensus 83 ------------~v~F~T~i~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~v 132 (172)
T 2awf_A 83 ------------KMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETI 132 (172)
T ss_dssp ------------EEEECSCCCCTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHH
T ss_pred ------------cccccCCCccCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHH
Confidence 9999999999999999999999996 689999999876
No 23
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=1.9e-36 Score=228.78 Aligned_cols=100 Identities=35% Similarity=0.832 Sum_probs=95.7
Q ss_pred hHHHHHHHHHhhcCCCCCeEEE-EcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAG-PVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV 80 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~-p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~ 80 (129)
.|||+||+++|++++++|+++. +.++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 9 ~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP---------------- 72 (183)
T 3rz3_A 9 QKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPP---------------- 72 (183)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC----------------
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCC----------------
Confidence 5899999999999999999999 67789999999999999999999999999999999999999
Q ss_pred ccccccCCCCCeEEeeeccccceecCCCcEEeccCC-------------CCcccccCcccc
Q psy4279 81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKA 128 (129)
Q Consensus 81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~-------------~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+++|+||+++|. ++|+|++||++|
T Consensus 73 -----------~v~f~t~i~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~v 122 (183)
T 3rz3_A 73 -----------AFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTI 122 (183)
T ss_dssp -----------EEEESSCCCCTTBCTTSBBCCTTC--------------CCCCTTCCHHHH
T ss_pred -----------eeEecCCCccCCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHH
Confidence 9999999999999999999999997 789999999876
No 24
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=1.9e-36 Score=223.90 Aligned_cols=100 Identities=40% Similarity=0.861 Sum_probs=95.8
Q ss_pred hHHHHHHHHHhhcC---CCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCc
Q psy4279 2 KKNKQKELQDLGRD---PPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQP 78 (129)
Q Consensus 2 ~rRL~kEl~~l~~~---~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~ 78 (129)
.+||+||+++|+++ +++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 10 ~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP-------------- 75 (159)
T 2bep_A 10 VQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPP-------------- 75 (159)
T ss_dssp HHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC--------------
T ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCC--------------
Confidence 58999999999985 5889999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCeEEeeeccccceec-CCCcEEeccCCCCcccccCcccc
Q psy4279 79 KVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 79 ~~~~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+ .+|+||+++|+++|+|++||++|
T Consensus 76 -------------~v~f~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~v 113 (159)
T 2bep_A 76 -------------KVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 113 (159)
T ss_dssp -------------EEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred -------------EEEeeCCCCccCCCCCCCEEeChhhhccCCCCCcHHHH
Confidence 99999999999999 59999999999999999999876
No 25
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=8.7e-37 Score=228.45 Aligned_cols=100 Identities=35% Similarity=0.682 Sum_probs=97.1
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK 81 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~ 81 (129)
.+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 25 ~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP----------------- 87 (169)
T 1yrv_A 25 YLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPP----------------- 87 (169)
T ss_dssp HHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCC-----------------
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCC-----------------
Confidence 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeEEeeecccccee-cCCCcEEeccCC--CCcccccCcccc
Q psy4279 82 VSRKYPLKLPKVAFTTRIYHPNI-NSNGSICLDILR--SQWSPALTISKA 128 (129)
Q Consensus 82 ~~~~~~~~~p~v~f~t~i~HPni-~~~G~iCl~~L~--~~Wsp~~ti~~v 128 (129)
+|+|.|++||||| +.+|+||+++|+ ++|+|++||++|
T Consensus 88 ----------~V~F~T~i~HPNI~~~~G~ICL~iL~~~~~WsP~~ti~~v 127 (169)
T 1yrv_A 88 ----------VVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSI 127 (169)
T ss_dssp ----------EEEESSCCCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHH
T ss_pred ----------cceecCCCccCcccCCCCeEeehhhcCCcCCCCcCCHHHH
Confidence 9999999999999 799999999998 899999999876
No 26
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=1.2e-36 Score=235.73 Aligned_cols=100 Identities=46% Similarity=0.930 Sum_probs=97.1
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK 81 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~ 81 (129)
.+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 25 ~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP----------------- 87 (216)
T 2pwq_A 25 LLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPP----------------- 87 (216)
T ss_dssp HHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC-----------------
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCC-----------------
Confidence 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeEEeeeccccceec-CCCcEEeccCCCCcccccCcccc
Q psy4279 82 VSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 82 ~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+ .+|.||+|+|+++|+|++||++|
T Consensus 88 ----------~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~V 125 (216)
T 2pwq_A 88 ----------KIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTA 125 (216)
T ss_dssp ----------EEEESSCCCBTTBCTTTCBBCCHHHHHHCCTTCCHHHH
T ss_pred ----------cccccCCCcCCCCcCCCCEEEchhhcccCCCCCcHHHH
Confidence 99999999999999 58999999999999999999876
No 27
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=2.7e-36 Score=230.14 Aligned_cols=100 Identities=49% Similarity=0.930 Sum_probs=94.0
Q ss_pred hHHHHHHHHHhhcCCC-------------CCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCC
Q psy4279 2 KKNKQKELQDLGRDPP-------------AQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPK 68 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~-------------~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~ 68 (129)
.|||+||+++|+++++ .|+.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 34 ~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP---- 109 (193)
T 2f4z_A 34 QARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPP---- 109 (193)
T ss_dssp HHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC----
T ss_pred HHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCC----
Confidence 5899999999999876 79999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcccccccccCCCCCeEEeeeccccceec-CCCcEEeccCCCCcccccCcccc
Q psy4279 69 VSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+ .+|+||+++|+++|+|++||++|
T Consensus 110 -----------------------~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~v 147 (193)
T 2f4z_A 110 -----------------------KMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTA 147 (193)
T ss_dssp -----------------------EEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHH
T ss_pred -----------------------eEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHH
Confidence 99999999999999 59999999999999999999876
No 28
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=2.5e-36 Score=223.03 Aligned_cols=100 Identities=40% Similarity=0.803 Sum_probs=95.6
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcC-----CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCC
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVG-----DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLK 76 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~-----~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~ 76 (129)
.|||+||+++|++++++|+.+.|.+ +|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 6 ~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP------------ 73 (157)
T 2gjd_A 6 LQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPP------------ 73 (157)
T ss_dssp HHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCC------------
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCC------------
Confidence 5899999999999999999999875 48999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCCeEEeeeccccceecCCCcEEeccCCC--CcccccCcccc
Q psy4279 77 QPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISKA 128 (129)
Q Consensus 77 ~~~~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~--~Wsp~~ti~~v 128 (129)
+|+|.|+++||||+++|+||+++|++ +|+|++||++|
T Consensus 74 ---------------~v~f~t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~v 112 (157)
T 2gjd_A 74 ---------------KVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQI 112 (157)
T ss_dssp ---------------EEECCTTCCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHH
T ss_pred ---------------eeeccCCCccCCCCCCCcEeeecccCCCCCCCCCcHHHH
Confidence 99999999999999999999999987 79999999876
No 29
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=4.9e-36 Score=220.76 Aligned_cols=100 Identities=39% Similarity=0.843 Sum_probs=96.4
Q ss_pred ChHHHHHHHHHhhcCCCCCeEE-EEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279 1 MKKNKQKELQDLGRDPPAQCSA-GPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK 79 (129)
Q Consensus 1 ~~rRL~kEl~~l~~~~~~~~~~-~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~ 79 (129)
+.|||+||+++|++++++|+.+ .+.++|+++|+++|. |++|||+||.|+++|.||++||++||
T Consensus 5 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP--------------- 68 (155)
T 1wzv_A 5 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPP--------------- 68 (155)
T ss_dssp CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCC---------------
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCC---------------
Confidence 3699999999999999999999 788899999999999 99999999999999999999999999
Q ss_pred cccccccCCCCCeEEeeeccccceecCCCcEEeccC-CCCcccccCcccc
Q psy4279 80 VKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDIL-RSQWSPALTISKA 128 (129)
Q Consensus 80 ~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L-~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+.+|+||+++| .++|+|++||++|
T Consensus 69 ------------~v~f~t~i~HPnV~~~G~iCl~iL~~~~W~p~~~i~~v 106 (155)
T 1wzv_A 69 ------------MIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQV 106 (155)
T ss_dssp ------------EEEESSCCCBTTBCTTCBCCCGGGCTTTCCTTCCHHHH
T ss_pred ------------cceeeCCCccCcCCCCCeEeecCCCccCCCCCCcHHHH
Confidence 999999999999999999999999 8999999999876
No 30
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=8e-36 Score=227.97 Aligned_cols=101 Identities=40% Similarity=0.850 Sum_probs=96.4
Q ss_pred ChHHHHHHHHHhhcC---CCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCC
Q psy4279 1 MKKNKQKELQDLGRD---PPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQ 77 (129)
Q Consensus 1 ~~rRL~kEl~~l~~~---~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~ 77 (129)
+.|||+||+++|+++ ++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 6 a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP------------- 72 (201)
T 3k9o_A 6 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPP------------- 72 (201)
T ss_dssp THHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-------------
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCC-------------
Confidence 469999999999987 3689999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCeEEeeeccccceec-CCCcEEeccCCCCcccccCcccc
Q psy4279 78 PKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 78 ~~~~~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+ .+|+||+|+|+++|+|++||++|
T Consensus 73 --------------~v~f~t~i~HPnv~~~~G~iCl~iL~~~W~p~~~i~~v 110 (201)
T 3k9o_A 73 --------------KVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 110 (201)
T ss_dssp --------------EEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred --------------ccccccCcccCCCcCCCCeeeCcccccCCCCCCCHHHH
Confidence 99999999999999 59999999999999999999876
No 31
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=6.6e-36 Score=221.55 Aligned_cols=100 Identities=35% Similarity=0.760 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcC-----CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCC
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVG-----DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLK 76 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~-----~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~ 76 (129)
.|||+||+++|++++++|+.+.|.+ +|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 9 ~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP------------ 76 (161)
T 2grr_A 9 LSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPP------------ 76 (161)
T ss_dssp HHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC------------
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCC------------
Confidence 5899999999999999999998864 68999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCCeEEeeeccccceecCCCcEEeccCCC--CcccccCcccc
Q psy4279 77 QPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISKA 128 (129)
Q Consensus 77 ~~~~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~--~Wsp~~ti~~v 128 (129)
+|+|.|+++||||+++|+||+++|++ +|+|++||++|
T Consensus 77 ---------------~v~f~t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~v 115 (161)
T 2grr_A 77 ---------------KCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQI 115 (161)
T ss_dssp ---------------EEEESSCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHH
T ss_pred ---------------EEEEecCcccCCCCCCCeEeehhcCCCCCcCCCCcHHHH
Confidence 99999999999999999999999986 79999999876
No 32
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-35 Score=219.99 Aligned_cols=97 Identities=37% Similarity=0.791 Sum_probs=92.7
Q ss_pred hHHHHHHHHHhhcCCCCCeEEE-EcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAG-PVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV 80 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~-p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~ 80 (129)
.+||+||+++| ++++|+.+. +.++|+++|+++| ||++|||+||.|+++|.||++||++||
T Consensus 8 ~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP---------------- 68 (160)
T 1y8x_A 8 QLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPP---------------- 68 (160)
T ss_dssp HHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCC----------------
T ss_pred HHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCC----------------
Confidence 58999999999 578899998 7889999999998 999999999999999999999999999
Q ss_pred ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279 81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|+++||||+.+|+||+|+|+++|+|++||++|
T Consensus 69 -----------~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~v 105 (160)
T 1y8x_A 69 -----------KVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSI 105 (160)
T ss_dssp -----------EEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHH
T ss_pred -----------EEEEecCCccCcCCCCCeEEcccchhhccCCCCHHHH
Confidence 9999999999999999999999999999999999876
No 33
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=2.8e-35 Score=218.91 Aligned_cols=100 Identities=28% Similarity=0.499 Sum_probs=93.6
Q ss_pred hHHHHHHHHHhhcCCCCC-eEEEE-cCCC--ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCC
Q psy4279 2 KKNKQKELQDLGRDPPAQ-CSAGP-VGDD--LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQ 77 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~-~~~~p-~~~n--l~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~ 77 (129)
.|||+||+++|++++++| +.+.+ .++| +++|+++|.||++||||||.|+++|.||++||++||
T Consensus 27 ~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP------------- 93 (160)
T 2a4d_A 27 NFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPP------------- 93 (160)
T ss_dssp HHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-------------
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCc-------------
Confidence 479999999999998888 78887 4454 999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCeEEeeeccccceec-CCCcEEeccCC--CCcccccCcccc
Q psy4279 78 PKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILR--SQWSPALTISKA 128 (129)
Q Consensus 78 ~~~~~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~--~~Wsp~~ti~~v 128 (129)
+|+|.|+++||||+ ++|+||+++|+ ++|+|++||++|
T Consensus 94 --------------~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~v 133 (160)
T 2a4d_A 94 --------------FVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVV 133 (160)
T ss_dssp --------------EEEESBCCCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHH
T ss_pred --------------EEEEecCceeCCEECCCCEEehhhcCCccCCCccCcHHHH
Confidence 99999999999999 79999999998 899999999876
No 34
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=5.4e-36 Score=231.84 Aligned_cols=101 Identities=49% Similarity=0.982 Sum_probs=96.4
Q ss_pred ChHHHHHHHHHhhcCCCCCeEEEEcCC-CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279 1 MKKNKQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK 79 (129)
Q Consensus 1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~-nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~ 79 (129)
+.|||+||+++|++++++|+++.+.++ ++++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 3 a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP--------------- 67 (215)
T 1tte_A 3 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPP--------------- 67 (215)
T ss_dssp THHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCC---------------
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCC---------------
Confidence 469999999999999999999999886 4669999999999999999999999999999999999
Q ss_pred cccccccCCCCCeEEeeeccccceecC-CCcEEeccCCCCcccccCcccc
Q psy4279 80 VKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 80 ~~~~~~~~~~~p~v~f~t~i~HPni~~-~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||++ +|+||+|+|+++|+|++||++|
T Consensus 68 ------------~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~V 105 (215)
T 1tte_A 68 ------------KMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSA 105 (215)
T ss_dssp ------------EEEETTTCCCSSSCSSSSCCCSSTTTCCSCTTCCHHHH
T ss_pred ------------cccccCCCccCcCcCCCCEEECccCCCCCCCcCcHHHH
Confidence 999999999999998 9999999999999999999876
No 35
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.3e-35 Score=221.79 Aligned_cols=97 Identities=36% Similarity=0.754 Sum_probs=92.8
Q ss_pred hHHHHHHHHHhhcCCCCCeEEE-EcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAG-PVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV 80 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~-p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~ 80 (129)
.+||+||+++| ++++|+.+. +.++|+++|+++| ||++|||+||.|+++|.||++||++||
T Consensus 28 ~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP---------------- 88 (180)
T 2nvu_C 28 QLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPP---------------- 88 (180)
T ss_dssp HHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCC----------------
T ss_pred HHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCC----------------
Confidence 58999999999 578899998 7889999999998 999999999999999999999999999
Q ss_pred ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279 81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+.+|+||+|+|+++|+|++||++|
T Consensus 89 -----------~v~F~t~i~HPNV~~~G~iCl~iL~~~W~p~~~i~~v 125 (180)
T 2nvu_C 89 -----------KVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSI 125 (180)
T ss_dssp -----------EEEECSCCCBTTBCTTSBBCCGGGTTSCCTTCCHHHH
T ss_pred -----------cCceeccCccCCCCCCCcEEcccccccCCCCCCHHHH
Confidence 9999999999999999999999999999999999876
No 36
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=8.9e-36 Score=219.32 Aligned_cols=98 Identities=26% Similarity=0.653 Sum_probs=93.1
Q ss_pred ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279 1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV 80 (129)
Q Consensus 1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~ 80 (129)
+.|||+||+++|+++ |+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 3 a~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP---------------- 63 (152)
T 2onu_A 3 SLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASP---------------- 63 (152)
T ss_dssp CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC----------------
T ss_pred HHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCC----------------
Confidence 468999999999874 7889999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCeEEeeeccccceec-CCCcEEeccCCCCcccccCcccc
Q psy4279 81 KVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 81 ~~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+ .+|+||+|+|+++|+|++||++|
T Consensus 64 -----------~v~f~t~i~HPni~~~~G~iCl~il~~~W~p~~~i~~v 101 (152)
T 2onu_A 64 -----------SIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNV 101 (152)
T ss_dssp -----------EEEESSCCCCTTBCTTTCBBCHHHHHHHCCTTCCHHHH
T ss_pred -----------eEEEecCCccCcCcCcCCeEecccccccCCCCCCHHHH
Confidence 99999999999999 59999999999999999999876
No 37
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=3.6e-35 Score=215.93 Aligned_cols=100 Identities=36% Similarity=0.816 Sum_probs=93.5
Q ss_pred ChHHHHHHHHHhhcCCCCCeEEEE-cCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcc
Q psy4279 1 MKKNKQKELQDLGRDPPAQCSAGP-VGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPK 79 (129)
Q Consensus 1 ~~rRL~kEl~~l~~~~~~~~~~~p-~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~ 79 (129)
+.+||+||+++|++++++|+.+.+ .++|+++|+++|. |++|||+||.|+++|.||++||++||
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP--------------- 66 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPP--------------- 66 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCC---------------
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCC---------------
Confidence 358999999999999999998654 6789999999998 99999999999999999999999999
Q ss_pred cccccccCCCCCeEEeeeccccceecCCCcEEeccCC-CCcccccCcccc
Q psy4279 80 VKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR-SQWSPALTISKA 128 (129)
Q Consensus 80 ~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~-~~Wsp~~ti~~v 128 (129)
+|+|.|+++||||+++|+||+++|+ ++|+|++||++|
T Consensus 67 ------------~v~f~t~i~HPnv~~~G~iCl~iL~~~~W~p~~~i~~v 104 (154)
T 1c4z_D 67 ------------KITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQV 104 (154)
T ss_dssp ------------EEEESSCCCCTTBCTTCBBCCTTTSSSSCCTTCCHHHH
T ss_pred ------------EEEEeCCCccccCCCCCEEECCCCCCCCCCCCCcHHHH
Confidence 9999999999999999999999997 789999999876
No 38
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=1.8e-35 Score=220.39 Aligned_cols=101 Identities=29% Similarity=0.597 Sum_probs=96.4
Q ss_pred ChHHHHHHHHHhhcCC------------CCCeEEEEcCCCceeEEEEEeCCCCCCCC--CcEEEEEEEcCCCCCCCCCCC
Q psy4279 1 MKKNKQKELQDLGRDP------------PAQCSAGPVGDDLFHWQATIMGPPDSPYQ--GGVFFLTIHFPTDYPFKPPKP 66 (129)
Q Consensus 1 ~~rRL~kEl~~l~~~~------------~~~~~~~p~~~nl~~w~~~i~gp~~tpY~--gg~y~~~i~fp~~YP~~pP~~ 66 (129)
+.|||+||+++|++++ +.++.+.+.++|+++|+++|.||++|||+ ||.|+++|.||++||++||
T Consensus 9 a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP-- 86 (167)
T 4ds2_A 9 SNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPP-- 86 (167)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCC--
T ss_pred HHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCC--
Confidence 3699999999999976 78899999999999999999999999999 9999999999999999999
Q ss_pred CCcccccCCCCcccccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279 67 PKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+.+|+||+++|+++|+|++||++|
T Consensus 87 -------------------------~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~v 123 (167)
T 4ds2_A 87 -------------------------TVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDV 123 (167)
T ss_dssp -------------------------EEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHH
T ss_pred -------------------------EEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHH
Confidence 9999999999999999999999999999999998764
No 39
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=8.9e-35 Score=216.29 Aligned_cols=99 Identities=36% Similarity=0.694 Sum_probs=93.8
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEc-CCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV 80 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~-~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~ 80 (129)
.|||+||+++|++++++|+.+.+. ++|+++|+++| ||++|||+||.|+++|.||++||++||
T Consensus 16 ~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP---------------- 78 (167)
T 3fn1_B 16 DKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPP---------------- 78 (167)
T ss_dssp HHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCC----------------
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCC----------------
Confidence 589999999999999999999854 57899999998 899999999999999999999999999
Q ss_pred ccccccCCCCCeEEeeeccccceecCCCcEEeccCCC------CcccccCcccc
Q psy4279 81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS------QWSPALTISKA 128 (129)
Q Consensus 81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~------~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+.+|+||+++|++ +|+|++||++|
T Consensus 79 -----------~v~f~t~i~HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~v 121 (167)
T 3fn1_B 79 -----------KVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDV 121 (167)
T ss_dssp -----------EEEECSCCCCSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHH
T ss_pred -----------eeEecCCcccCCCCCCCEEechhhccCCCCCCCCCCcCcHHHH
Confidence 99999999999999999999999975 79999999876
No 40
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=9.5e-35 Score=229.62 Aligned_cols=100 Identities=40% Similarity=0.861 Sum_probs=96.0
Q ss_pred hHHHHHHHHHhhcC---CCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCc
Q psy4279 2 KKNKQKELQDLGRD---PPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQP 78 (129)
Q Consensus 2 ~rRL~kEl~~l~~~---~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~ 78 (129)
.+||+|||++|+++ ++.|+.+.|.++|+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 59 ~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP-------------- 124 (253)
T 3e46_A 59 VQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPP-------------- 124 (253)
T ss_dssp HHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC--------------
T ss_pred HHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCC--------------
Confidence 58999999999987 4789999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCeEEeeeccccceec-CCCcEEeccCCCCcccccCcccc
Q psy4279 79 KVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 79 ~~~~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+ .+|.||+|+|.++|+|++||++|
T Consensus 125 -------------~V~F~T~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~v 162 (253)
T 3e46_A 125 -------------KVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 162 (253)
T ss_dssp -------------EEEESSCCCBTTBCTTTCBBCCGGGTTCCCTTCCHHHH
T ss_pred -------------eeeecCCCccCCccCCCCeeecccccCCCCCCCCHHHH
Confidence 99999999999999 59999999999999999999876
No 41
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=1.5e-34 Score=213.99 Aligned_cols=99 Identities=29% Similarity=0.523 Sum_probs=92.9
Q ss_pred hHHHHHHHHHhhcC-CCCCeEEEEcC-C--CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCC
Q psy4279 2 KKNKQKELQDLGRD-PPAQCSAGPVG-D--DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQ 77 (129)
Q Consensus 2 ~rRL~kEl~~l~~~-~~~~~~~~p~~-~--nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~ 77 (129)
.+||+||+++|+++ +++|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 23 ~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP------------- 89 (156)
T 2q0v_A 23 SFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPP------------- 89 (156)
T ss_dssp HHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-------------
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCC-------------
Confidence 48999999999998 78999999854 3 5999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCeEEeeeccccceecCCCcE---EeccCCCCcccccCcccc
Q psy4279 78 PKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSI---CLDILRSQWSPALTISKA 128 (129)
Q Consensus 78 ~~~~~~~~~~~~~p~v~f~t~i~HPni~~~G~i---Cl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+++|+| |+++|+ +|+|++||++|
T Consensus 90 --------------~v~F~t~i~HPNV~~~G~icisCL~iL~-~WsP~~ti~~v 128 (156)
T 2q0v_A 90 --------------TVKFDTKIEMSCVDNCGRVIKNNLHILK-NWNRNYTIETI 128 (156)
T ss_dssp --------------EEEESBCCCCTTBCTTSBBCGGGSHHHH-TCCTTCCHHHH
T ss_pred --------------eEEEEcccccCCCccCCeEehhhccccc-CCCCcCcHHHH
Confidence 9999999999999999999 899997 59999999876
No 42
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=1.4e-34 Score=209.73 Aligned_cols=99 Identities=32% Similarity=0.638 Sum_probs=89.8
Q ss_pred hHHHHHHHHHhhcC-CCCCeEEEEcC-C--CceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCC
Q psy4279 2 KKNKQKELQDLGRD-PPAQCSAGPVG-D--DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQ 77 (129)
Q Consensus 2 ~rRL~kEl~~l~~~-~~~~~~~~p~~-~--nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~ 77 (129)
.|||+||+++|+++ +++|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 8 ~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP------------- 74 (138)
T 1jat_B 8 NFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPP------------- 74 (138)
T ss_dssp HHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCC-------------
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCC-------------
Confidence 37999999999998 78999999854 3 5999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCeEEeeeccccceecCC-CcE--EeccCCCCcccccCcccc
Q psy4279 78 PKVKVSRKYPLKLPKVAFTTRIYHPNINSN-GSI--CLDILRSQWSPALTISKA 128 (129)
Q Consensus 78 ~~~~~~~~~~~~~p~v~f~t~i~HPni~~~-G~i--Cl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+.+ |+| |+++|+ +|+|++||++|
T Consensus 75 --------------~v~f~t~i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~v 113 (138)
T 1jat_B 75 --------------KVTFISKINLPCVNPTTGEVQTDFHTLR-DWKRAYTMETL 113 (138)
T ss_dssp --------------EEEESBCCCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHH
T ss_pred --------------ceEEEcccccCCEeCCCCEEeeecccCC-CCCCcCcHHHH
Confidence 9999999999999986 999 999985 89999999876
No 43
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=7.5e-35 Score=218.29 Aligned_cols=100 Identities=28% Similarity=0.499 Sum_probs=93.6
Q ss_pred hHHHHHHHHHhhcCCCCC-eEEEE-cCCC--ceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCC
Q psy4279 2 KKNKQKELQDLGRDPPAQ-CSAGP-VGDD--LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQ 77 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~-~~~~p-~~~n--l~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~ 77 (129)
.+||+||+++|++++++| +.+.+ .++| +++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 37 ~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP------------- 103 (170)
T 2hlw_A 37 NFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPP------------- 103 (170)
T ss_dssp HHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCC-------------
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCC-------------
Confidence 489999999999998888 77887 4554 999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCeEEeeeccccceec-CCCcEEeccCC--CCcccccCcccc
Q psy4279 78 PKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILR--SQWSPALTISKA 128 (129)
Q Consensus 78 ~~~~~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~--~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+ .+|+||+++|+ ++|+|++||++|
T Consensus 104 --------------~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~v 143 (170)
T 2hlw_A 104 --------------FVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVV 143 (170)
T ss_dssp --------------EEEECBCCCCSSBCSSSCBBCTTTCHHHHTCCSSCCHHHH
T ss_pred --------------eeEEecccccCCEeCCCCEEEhhhcCCCCCCCccCcHHHH
Confidence 99999999999999 79999999998 899999999876
No 44
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=2e-34 Score=215.87 Aligned_cols=100 Identities=35% Similarity=0.715 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhhc-C-C------CC---CeEEEE-cCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCc
Q psy4279 2 KKNKQKELQDLGR-D-P------PA---QCSAGP-VGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKV 69 (129)
Q Consensus 2 ~rRL~kEl~~l~~-~-~------~~---~~~~~p-~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~ 69 (129)
.+||+||+++|++ + + +. ++.+.| .++|+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 8 ~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP----- 82 (172)
T 2y9m_A 8 MSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP----- 82 (172)
T ss_dssp HHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-----
T ss_pred HHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC-----
Confidence 5899999999998 4 3 33 567788 7889999999999999999999999999999999999999
Q ss_pred ccccCCCCcccccccccCCCCCeEEeee-ccccceec-CCCcEEeccCC-CCcccccCcccc
Q psy4279 70 SIEYPLKQPKVKVSRKYPLKLPKVAFTT-RIYHPNIN-SNGSICLDILR-SQWSPALTISKA 128 (129)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~p~v~f~t-~i~HPni~-~~G~iCl~~L~-~~Wsp~~ti~~v 128 (129)
+|+|.| ++|||||+ .+|+||+++|+ ++|+|++||++|
T Consensus 83 ----------------------~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~v 122 (172)
T 2y9m_A 83 ----------------------KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHC 122 (172)
T ss_dssp ----------------------EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHH
T ss_pred ----------------------EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHH
Confidence 999999 99999995 89999999998 899999999876
No 45
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=4.7e-34 Score=237.13 Aligned_cols=101 Identities=89% Similarity=1.463 Sum_probs=98.4
Q ss_pred ChHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCccc
Q psy4279 1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKV 80 (129)
Q Consensus 1 ~~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~ 80 (129)
+.|||+||+++|++++++|+.+.|.++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 4 a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP---------------- 67 (399)
T 4ddg_A 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPP---------------- 67 (399)
T ss_dssp HHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCC----------------
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCc----------------
Confidence 3699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279 81 KVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 81 ~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|+++||||+++|.||+|+|+++|+|++||++|
T Consensus 68 -----------~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~v 104 (399)
T 4ddg_A 68 -----------KVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKV 104 (399)
T ss_dssp -----------EEEESSCCCCTTBCTTCBBCCGGGTTSCCTTCCHHHH
T ss_pred -----------EEEeeccccccccCCCCeEeCcccccCCCccccHHHH
Confidence 9999999999999999999999999999999999876
No 46
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=218.66 Aligned_cols=96 Identities=28% Similarity=0.748 Sum_probs=91.0
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK 81 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~ 81 (129)
.|||+||+++|++ +|+.+.+. ||+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 27 ~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP----------------- 85 (179)
T 2z5d_A 27 KRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSP----------------- 85 (179)
T ss_dssp HHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-----------------
T ss_pred HHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCc-----------------
Confidence 5899999999985 57888887 67999999999999999999999999999999999999
Q ss_pred cccccCCCCCeEEeeeccccceecC-CCcEEeccCCCCcccccCcccc
Q psy4279 82 VSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 82 ~~~~~~~~~p~v~f~t~i~HPni~~-~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+. +|+||+|+|+++|+|++||++|
T Consensus 86 ----------~V~F~t~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~i 123 (179)
T 2z5d_A 86 ----------SIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNI 123 (179)
T ss_dssp ----------EEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTTHH
T ss_pred ----------eEEEecCCccCcCCCCCCeEeccccccCCCCCCCHHHH
Confidence 999999999999998 9999999999999999999876
No 47
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1e-33 Score=214.73 Aligned_cols=98 Identities=28% Similarity=0.699 Sum_probs=88.4
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK 81 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~ 81 (129)
.+||+||+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 16 ~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP----------------- 78 (187)
T 2f4w_A 16 TQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPP----------------- 78 (187)
T ss_dssp HHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCC-----------------
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCC-----------------
Confidence 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeEEeeeccccceecCCCcEEeccC---CCCcccccCcccc
Q psy4279 82 VSRKYPLKLPKVAFTTRIYHPNINSNGSICLDIL---RSQWSPALTISKA 128 (129)
Q Consensus 82 ~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L---~~~Wsp~~ti~~v 128 (129)
+|+|.|+ |||++.+|+||+|+| .++|+|++||++|
T Consensus 79 ----------~v~f~T~--~~~~~~~G~ICL~iL~~~~~~W~P~~ti~~v 116 (187)
T 2f4w_A 79 ----------SIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTI 116 (187)
T ss_dssp ----------EEEECSC--CSSBCTTSCBC----------CCTTCCHHHH
T ss_pred ----------cccccCC--CceeccCCeEeeeccccCccCCCCcCcHHHH
Confidence 9999998 999999999999999 6899999999876
No 48
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=6.1e-34 Score=213.35 Aligned_cols=96 Identities=29% Similarity=0.767 Sum_probs=89.9
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCCcccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVK 81 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~~~~~ 81 (129)
.+||++|+++|++++. + + +.++|+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 14 ~~RL~~El~~l~~~~~-~--v-~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP----------------- 72 (171)
T 1yf9_A 14 NRRREMDYMRLCNSTR-K--V-YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSP----------------- 72 (171)
T ss_dssp CHHHHHHHHHHHSSSS-C--E-EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC-----------------
T ss_pred HHHHHHHHHHHHhCCC-C--C-CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCC-----------------
Confidence 5899999999999874 4 3 45889999999999999999999999999999999999999
Q ss_pred cccccCCCCCeEEeeeccccceec-CCCcEEeccCCCCcccccCcccc
Q psy4279 82 VSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 82 ~~~~~~~~~p~v~f~t~i~HPni~-~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+ .+|+||+|+|+++|+|++||++|
T Consensus 73 ----------~v~F~t~i~HPNi~~~~G~iCl~iL~~~W~p~~~i~~v 110 (171)
T 1yf9_A 73 ----------SIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENI 110 (171)
T ss_dssp ----------EEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTHHH
T ss_pred ----------eEEeecCcccccCcccCCeEeccccccCCCCCCcHHHH
Confidence 99999999999999 59999999999999999999876
No 49
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=1.2e-33 Score=214.84 Aligned_cols=97 Identities=32% Similarity=0.683 Sum_probs=92.6
Q ss_pred hHHHHHHHHHhhcCCCCCeEEE----EcCCCce---eEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccC
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAG----PVGDDLF---HWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYP 74 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~----p~~~nl~---~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~ 74 (129)
.+||+|||++|+ .++|+.+. +.++|++ +|+++|. |++|||+||.|+++|.||++||++||
T Consensus 31 ~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP---------- 97 (190)
T 3o2u_A 31 RIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPP---------- 97 (190)
T ss_dssp HHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCC----------
T ss_pred HHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCc----------
Confidence 689999999998 77899998 8889999 9999997 78899999999999999999999999
Q ss_pred CCCcccccccccCCCCCeEEeeeccccceecCCCcEEeccCCCCcccccCcccc
Q psy4279 75 LKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKA 128 (129)
Q Consensus 75 ~~~~~~~~~~~~~~~~p~v~f~t~i~HPni~~~G~iCl~~L~~~Wsp~~ti~~v 128 (129)
+|+|.|++|||||+.+|+||+++|+++|+|++||++|
T Consensus 98 -----------------~v~f~t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~v 134 (190)
T 3o2u_A 98 -----------------KVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSI 134 (190)
T ss_dssp -----------------EEEECSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHH
T ss_pred -----------------eeEEecCcccCCCCCCCeEechhccCCCCCCCCHHHH
Confidence 9999999999999999999999999999999999876
No 50
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=5.9e-34 Score=216.01 Aligned_cols=100 Identities=27% Similarity=0.598 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhhcCC---CCCeEEEEcCCCceeEEEEEeCC-CCCCCCC-----------cEEEEEEEcCCCCCCCCCCC
Q psy4279 2 KKNKQKELQDLGRDP---PAQCSAGPVGDDLFHWQATIMGP-PDSPYQG-----------GVFFLTIHFPTDYPFKPPKP 66 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~---~~~~~~~p~~~nl~~w~~~i~gp-~~tpY~g-----------g~y~~~i~fp~~YP~~pP~~ 66 (129)
.+||+|||++|++++ ++++.+.+.++|+++|+++|.|| ++|||+| |.|+|+|.||++||++||
T Consensus 29 ~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP-- 106 (186)
T 1zuo_A 29 SDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPP-- 106 (186)
T ss_dssp HHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCC--
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCC--
Confidence 589999999999988 68999999999999999999997 8999998 899999999999999999
Q ss_pred CCcccccCCCCcccccccccCCCCCeEEeeeccccc-eecCCCcEEeccCC-CCcccccCcccc
Q psy4279 67 PKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHP-NINSNGSICLDILR-SQWSPALTISKA 128 (129)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~p~v~f~t~i~HP-ni~~~G~iCl~~L~-~~Wsp~~ti~~v 128 (129)
+|+|.|+++|| ||+.+|+||+|+|. ++|+|++||++|
T Consensus 107 -------------------------~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~V 145 (186)
T 1zuo_A 107 -------------------------FVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESV 145 (186)
T ss_dssp -------------------------EEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHH
T ss_pred -------------------------eEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHH
Confidence 99999999999 69999999999997 789999999876
No 51
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=99.97 E-value=5.7e-32 Score=219.96 Aligned_cols=100 Identities=30% Similarity=0.613 Sum_probs=93.3
Q ss_pred hHHHHHHHHHhhcCCCCC----eEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCCCCCcccccCCCC
Q psy4279 2 KKNKQKELQDLGRDPPAQ----CSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKPPKVSIEYPLKQ 77 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~----~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~~~~~~~~~~~~~ 77 (129)
.|||+||+++|++++++| +.+.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||
T Consensus 78 ~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP------------- 144 (323)
T 3ceg_A 78 ARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPP------------- 144 (323)
T ss_dssp HHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCC-------------
T ss_pred HHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCC-------------
Confidence 589999999999988775 456788999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCeEEeeec-----cccceecCCCcEEeccCC-------CCccccc-Ccccc
Q psy4279 78 PKVKVSRKYPLKLPKVAFTTR-----IYHPNINSNGSICLDILR-------SQWSPAL-TISKA 128 (129)
Q Consensus 78 ~~~~~~~~~~~~~p~v~f~t~-----i~HPni~~~G~iCl~~L~-------~~Wsp~~-ti~~v 128 (129)
+|+|.|+ +|||||+.+|+||||+|+ ++|+|++ ||++|
T Consensus 145 --------------~V~F~T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~V 194 (323)
T 3ceg_A 145 --------------LVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQV 194 (323)
T ss_dssp --------------EEEECCSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHH
T ss_pred --------------eEEEeccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHH
Confidence 9999998 999999999999999997 6899999 78775
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.93 E-value=1e-27 Score=179.12 Aligned_cols=94 Identities=18% Similarity=0.280 Sum_probs=86.2
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCCCCCCccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGG----------VFFLTIHFPTDYPFKPPKPPKVSI 71 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg----------~y~~~i~fp~~YP~~pP~~~~~~~ 71 (129)
.+||++|+++|++ .+.+.++|+.+|.+.+.|++||+|+|| .|.++|+||++||++||
T Consensus 34 ~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PP------- 100 (172)
T 2z6o_A 34 VQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAP------- 100 (172)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCC-------
T ss_pred HHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCC-------
Confidence 6899999999999 367778999999999999999999999 99999999999999999
Q ss_pred ccCCCCcccccccccCCCCCeEEeeec-cccceecCCCcEEeccC-CC---CcccccCcccc
Q psy4279 72 EYPLKQPKVKVSRKYPLKLPKVAFTTR-IYHPNINSNGSICLDIL-RS---QWSPALTISKA 128 (129)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~p~v~f~t~-i~HPni~~~G~iCl~~L-~~---~Wsp~~ti~~v 128 (129)
+|+|.+. ++|||||.+|+||||+| +. .|+|+++|..|
T Consensus 101 --------------------eV~F~~~~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~Iahi 142 (172)
T 2z6o_A 101 --------------------EIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHL 142 (172)
T ss_dssp --------------------CCBCGGGTTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHH
T ss_pred --------------------eeeeCCCCCCCCCCCCCCcEechhhccccccccCCccCHHHH
Confidence 9999998 99999999999999999 43 35599998764
No 53
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.69 E-value=1.3e-18 Score=128.10 Aligned_cols=87 Identities=20% Similarity=0.341 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCc----------EEEEEEEcCCCCCCCCCCCCCccc
Q psy4279 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGG----------VFFLTIHFPTDYPFKPPKPPKVSI 71 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg----------~y~~~i~fp~~YP~~pP~~~~~~~ 71 (129)
..||.+||+.|-+- ++.+.++-.+|...+.|++||+|+|+ .|.++|+||.+||.+||
T Consensus 36 ~~RlkeEy~alI~y------v~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPP------- 102 (168)
T 3kpa_A 36 TARLKEEYASLITY------VEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPP------- 102 (168)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCC-------
T ss_pred HHHHHHHHHHHHHH------HHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCC-------
Confidence 47999999998652 22233445679999999999999999 99999999999999999
Q ss_pred ccCCCCcccccccccCCCCCeEEeeec-cccceecCCCcEEeccCCCCcccccC
Q psy4279 72 EYPLKQPKVKVSRKYPLKLPKVAFTTR-IYHPNINSNGSICLDILRSQWSPALT 124 (129)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~p~v~f~t~-i~HPni~~~G~iCl~~L~~~Wsp~~t 124 (129)
.++|.+. .+|||+|.+|+||||++ |+|+++
T Consensus 103 --------------------eI~Fp~ldgkt~kmYr~GkICLdIh---wkPlW~ 133 (168)
T 3kpa_A 103 --------------------EIALPELEGKTVKMYRGGKICMTTH---FFPLWA 133 (168)
T ss_dssp --------------------CCBCGGGTTTCSSEETTTEECCCTT---HHHHHH
T ss_pred --------------------EeecccccCcCccccCCCcEEeccc---cchhhH
Confidence 9999995 89999999999999986 998865
No 54
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.64 E-value=2.3e-16 Score=117.28 Aligned_cols=98 Identities=22% Similarity=0.338 Sum_probs=77.2
Q ss_pred HHHHHHHHHhhcCCC---CCeEEEEcCCCceeEEEEEeCCCCCCCCCcE---EEEEEEcCCCCCCCCCCCCCcccccCCC
Q psy4279 3 KNKQKELQDLGRDPP---AQCSAGPVGDDLFHWQATIMGPPDSPYQGGV---FFLTIHFPTDYPFKPPKPPKVSIEYPLK 76 (129)
Q Consensus 3 rRL~kEl~~l~~~~~---~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~---y~~~i~fp~~YP~~pP~~~~~~~~~~~~ 76 (129)
+|..+|+.++.+.-+ +...+...+|...++-+++.|.-..+|+||. |.+.|.||++||++||
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP------------ 98 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPP------------ 98 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCC------------
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCC------------
Confidence 577788888776322 2223345667777777778887779999999 7799999999999999
Q ss_pred CcccccccccCCCCCeEEeee-------c---cc-cceecCCCcEEeccCCCCccc-ccCcccc
Q psy4279 77 QPKVKVSRKYPLKLPKVAFTT-------R---IY-HPNINSNGSICLDILRSQWSP-ALTISKA 128 (129)
Q Consensus 77 ~~~~~~~~~~~~~~p~v~f~t-------~---i~-HPni~~~G~iCl~~L~~~Wsp-~~ti~~v 128 (129)
.+.|.+ + ++ ||||+++|+||++.| ++|+| +.+|.+|
T Consensus 99 ---------------~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lpyL-~~W~p~~s~L~~l 146 (162)
T 3r3q_A 99 ---------------FISINLENFDMNTISSSLPIQEYIDSNGWIALPIL-HAWDPAAMNLIMV 146 (162)
T ss_dssp ---------------EEEECGGGCCTTTSCTTSTHHHHBCTTSBBCCGGG-GSCCGGGCCHHHH
T ss_pred ---------------EEEEECCCccccccccccCCCCCCCCCCcEeCccc-ccCCCCcCcHHHH
Confidence 887765 1 66 999999999999999 56999 6788764
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.33 E-value=8.1e-13 Score=96.66 Aligned_cols=91 Identities=20% Similarity=0.377 Sum_probs=68.0
Q ss_pred HHHHHHHHhhcCCCCCeEE--E---EcCCCceeEEEEEeCCCCCCCCCcEEEE--EEEcCCCCCCCCCCCCCcccccCCC
Q psy4279 4 NKQKELQDLGRDPPAQCSA--G---PVGDDLFHWQATIMGPPDSPYQGGVFFL--TIHFPTDYPFKPPKPPKVSIEYPLK 76 (129)
Q Consensus 4 RL~kEl~~l~~~~~~~~~~--~---p~~~nl~~w~~~i~gp~~tpY~gg~y~~--~i~fp~~YP~~pP~~~~~~~~~~~~ 76 (129)
+..+|+.++.+.-+ ++.. . -...++.+|.++|. .+|+|+.|.+ .|-||++||++||
T Consensus 24 ~t~~dv~~vl~~yp-~L~p~~~~y~G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP------------ 86 (146)
T 3obq_A 24 LTVRETVNVITLYK-DLKPVLDSYGTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPP------------ 86 (146)
T ss_dssp HHHHHHHHHHHHCT-TEEEEEEESSSTTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCC------------
T ss_pred hhHHHHHHHHHhCC-CCceEeeeeeCChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCC------------
Confidence 44567766655322 2221 1 12368999999997 5799999995 8889999999999
Q ss_pred CcccccccccCCCCCeEEeeec------cccceecCCCcEEeccCCCCccc-ccCcccc
Q psy4279 77 QPKVKVSRKYPLKLPKVAFTTR------IYHPNINSNGSICLDILRSQWSP-ALTISKA 128 (129)
Q Consensus 77 ~~~~~~~~~~~~~~p~v~f~t~------i~HPni~~~G~iCl~~L~~~Wsp-~~ti~~v 128 (129)
.+ |.++ ..||||+++|+||++.|++ |++ +.+|.++
T Consensus 87 ---------------~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~~-W~~~~snL~~l 128 (146)
T 3obq_A 87 ---------------IC-FVKPTSSMTIKTGKHVDANGKIYLPYLHE-WKHPQSDLLGL 128 (146)
T ss_dssp ---------------EE-EECCCTTEEECCBTTBCTTCBBCCHHHHT-CCTTTCCHHHH
T ss_pred ---------------EE-EEeCCCCCEECCCCCCCCCCCEecccccc-cCCCCCCHHHH
Confidence 77 5544 4799999999999999955 988 6776543
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.43 E-value=0.079 Score=36.20 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCC
Q psy4279 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64 (129)
Q Consensus 3 rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP 64 (129)
.+...|+..|..--++.+.+. .+....+.+.|....+..-+.-.+.+.|.||++||..||
T Consensus 13 e~q~~EleaL~sIy~d~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P 72 (128)
T 2ebm_A 13 EEQRNELEALESIYPDSFTVL--SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAP 72 (128)
T ss_dssp HHHHHHHHHHHHHCSSSEEEC--CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCC
T ss_pred HHHHHHHHHHHHHccCceEEc--cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCc
Confidence 456788888887555555543 223356666665322222233478899999999999999
No 57
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=95.37 E-value=0.14 Score=34.99 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEcCC--CceeEEEEEeCCCCCCC--CCcEEEEEEEcCCCCCCCCC
Q psy4279 3 KNKQKELQDLGRDPPAQCSAGPVGD--DLFHWQATIMGPPDSPY--QGGVFFLTIHFPTDYPFKPP 64 (129)
Q Consensus 3 rRL~kEl~~l~~~~~~~~~~~p~~~--nl~~w~~~i~gp~~tpY--~gg~y~~~i~fp~~YP~~pP 64 (129)
.+.+.|+..|..--++.+.+....+ +...+.+.|....+..- ..-.+.+.|.+|++||..+|
T Consensus 11 e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P 76 (128)
T 2day_A 11 WVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVP 76 (128)
T ss_dssp CHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCC
T ss_pred HHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCC
Confidence 3578899999886556665542221 23444555542222111 12477899999999999999
No 58
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.45 Score=32.76 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=37.7
Q ss_pred HHHHHHHHhhcCCCCCeEEEEcC------CCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCC
Q psy4279 4 NKQKELQDLGRDPPAQCSAGPVG------DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64 (129)
Q Consensus 4 RL~kEl~~l~~~~~~~~~~~p~~------~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP 64 (129)
+-..|+..|..--++.+.+.... +....+.+.|....+ .-..-...+.|.+|++||..+|
T Consensus 14 ~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P 79 (138)
T 2yz0_A 14 IQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAP 79 (138)
T ss_dssp HHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCC
T ss_pred HHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCC
Confidence 45678888877544445432111 124567777764332 1123477899999999999999
No 59
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.33 E-value=0.4 Score=32.68 Aligned_cols=63 Identities=17% Similarity=0.061 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhhcCCCC--CeEEEE-cCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCCC
Q psy4279 2 KKNKQKELQDLGRDPPA--QCSAGP-VGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65 (129)
Q Consensus 2 ~rRL~kEl~~l~~~~~~--~~~~~p-~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP~ 65 (129)
..+...|+..|..--+. .+.+.. ...+...+.+.|...... =..-.+.+.|.+|.+||..+|.
T Consensus 9 ~e~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~-~~~~~~~L~~~~p~~YP~~~P~ 74 (128)
T 2ebk_A 9 AEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFM-DADIPLELVFHLPVNYPSCLPG 74 (128)
T ss_dssp CHHHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTT-TCCCEEEEEEEECSSTTSSCCC
T ss_pred HHHHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCC-CCCeEEEEEEECCCCCCCCCCe
Confidence 44667888888774322 343321 123346777777643211 0123788999999999999993
No 60
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=90.78 E-value=1.3 Score=30.24 Aligned_cols=62 Identities=15% Similarity=0.028 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEcCC-----CceeEEEEEeCCCCCCC-CCcEEEEEEEcCCCCCCCCC
Q psy4279 3 KNKQKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPDSPY-QGGVFFLTIHFPTDYPFKPP 64 (129)
Q Consensus 3 rRL~kEl~~l~~~~~~~~~~~p~~~-----nl~~w~~~i~gp~~tpY-~gg~y~~~i~fp~~YP~~pP 64 (129)
.+.+.|+..|..--++.+....... ....+.+.|....++-- ..-.+.+.|.||++||..+|
T Consensus 13 e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~L~v~~p~~YP~~~P 80 (137)
T 1ukx_A 13 QRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVP 80 (137)
T ss_dssp HHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCC
T ss_pred HHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEecCCcCCcccceEEEEEEECCCCCCCCCC
Confidence 3467788888875455554432111 13456666652111100 12368899999999999999
No 61
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=87.76 E-value=2.2 Score=31.81 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEcCCCceeEEEEEeCCCCCCCCCcEEEEEEEcCCCCCCCCC
Q psy4279 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64 (129)
Q Consensus 3 rRL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~gp~~tpY~gg~y~~~i~fp~~YP~~pP 64 (129)
.+|.+|+.++.=+. +.-.++++...++.+... .|....++|.++.+||.++|
T Consensus 4 ~~li~Ei~~iGW~~-----l~~id~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P 55 (186)
T 3zqs_A 4 SSLIEEIGTLGWDK-----LVYADTCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESP 55 (186)
T ss_dssp CSHHHHHHHHCGGG-----EEEECTTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCC
T ss_pred HHHHHHHHHhCCce-----eeeecCCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCC
Confidence 47889999883322 222367888999988843 35789999999999999999
No 62
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=74.83 E-value=2.2 Score=29.85 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=15.6
Q ss_pred EEEEEEEcCCCCCCCCC
Q psy4279 48 VFFLTIHFPTDYPFKPP 64 (129)
Q Consensus 48 ~y~~~i~fp~~YP~~pP 64 (129)
.+.+.|.+|.+||..||
T Consensus 74 ~l~L~v~lP~~YP~~~P 90 (152)
T 2dax_A 74 MFSLACILPFKYPAVLP 90 (152)
T ss_dssp EEEEEEEECSSTTSSCC
T ss_pred eEEEEEECCCCCCCCCC
Confidence 57899999999999999
No 63
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=74.58 E-value=3.2 Score=29.32 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=16.2
Q ss_pred EEEEEEEcCCCCCCCCC
Q psy4279 48 VFFLTIHFPTDYPFKPP 64 (129)
Q Consensus 48 ~y~~~i~fp~~YP~~pP 64 (129)
.+.++|.+|.+||..+|
T Consensus 76 ~i~L~v~lP~~YP~~~P 92 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLAL 92 (154)
T ss_dssp EEEEEEEECSSTTSSCC
T ss_pred eEEEEEEcCCCCCCCCC
Confidence 79999999999999999
No 64
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=40.16 E-value=17 Score=18.14 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhcCCCCCe
Q psy4279 3 KNKQKELQDLGRDPPAQC 20 (129)
Q Consensus 3 rRL~kEl~~l~~~~~~~~ 20 (129)
.||.-|+...+.+++.|.
T Consensus 8 drlllelnavqhnppsg~ 25 (26)
T 3u3c_B 8 DRLLLELNAVQHNPPSGX 25 (26)
T ss_pred HHHHHHHhhhccCCCCCC
Confidence 588899999998888763
No 65
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=28.09 E-value=13 Score=18.64 Aligned_cols=17 Identities=47% Similarity=0.978 Sum_probs=10.5
Q ss_pred CCCCCeEEeeeccccce
Q psy4279 87 PLKLPKVAFTTRIYHPN 103 (129)
Q Consensus 87 ~~~~p~v~f~t~i~HPn 103 (129)
+|.+|.-.|..+.|||-
T Consensus 4 pmtlpenyfserpyhpp 20 (26)
T 2jrw_A 4 PMTLPENYFSERPYHPP 20 (26)
T ss_dssp CCCCSSSSCCSSSCCSC
T ss_pred ccccchhhcccCCCCCC
Confidence 35555666666667773
Done!