RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4279
(129 letters)
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 197 bits (501), Expect = 3e-63
Identities = 89/122 (72%), Positives = 90/122 (73%), Gaps = 27/122 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTDYPFKP
Sbjct: 9 HKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP-- 66
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
PKVAFTTRIYHPNINSNGSI LDILRSQWSPALTI
Sbjct: 67 -------------------------PKVAFTTRIYHPNINSNGSISLDILRSQWSPALTI 101
Query: 126 SK 127
SK
Sbjct: 102 SK 103
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 185 bits (472), Expect = 7e-62
Identities = 94/122 (77%), Positives = 95/122 (77%), Gaps = 27/122 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPP+SPYQGGVFFLTIHFPTDYPFKP
Sbjct: 10 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKP-- 67
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI
Sbjct: 68 -------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 102
Query: 126 SK 127
SK
Sbjct: 103 SK 104
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 182 bits (465), Expect = 1e-60
Identities = 90/122 (73%), Positives = 91/122 (74%), Gaps = 27/122 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
KEL DL RDPPAQCSAGPVGDD+FHWQATIMGP DSPYQGGVFFLTIHFPTDYPFKP
Sbjct: 25 HKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP-- 82
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI
Sbjct: 83 -------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 117
Query: 126 SK 127
SK
Sbjct: 118 SK 119
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 182 bits (464), Expect = 1e-60
Identities = 78/122 (63%), Positives = 84/122 (68%), Gaps = 27/122 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
KEL DL +DPP CSAGPVGDD+FHWQATIMGP DSPY GGVFFL IHFP+DYPFKP
Sbjct: 27 NKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKP-- 84
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
PKV FTT+IYHPNINS G+ICLDIL+ QWSPALTI
Sbjct: 85 -------------------------PKVNFTTKIYHPNINSQGAICLDILKDQWSPALTI 119
Query: 126 SK 127
SK
Sbjct: 120 SK 121
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 180 bits (458), Expect = 2e-59
Identities = 65/122 (53%), Positives = 75/122 (61%), Gaps = 27/122 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
QKEL D+ DPP CSAGP GD+++ W++TI+GPP S Y+GGVFFL I F +YPFKP
Sbjct: 54 QKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKP-- 111
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
PKV F TRIYH NINS G ICLDIL+ WSPALTI
Sbjct: 112 -------------------------PKVTFRTRIYHCNINSQGVICLDILKDNWSPALTI 146
Query: 126 SK 127
SK
Sbjct: 147 SK 148
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 178 bits (453), Expect = 4e-59
Identities = 46/122 (37%), Positives = 60/122 (49%), Gaps = 27/122 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
KE Q+L +PP A PV ++ H+ I GP +PY+GG + L + P YP +P
Sbjct: 7 TKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEP-- 64
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I
Sbjct: 65 -------------------------PKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQI 99
Query: 126 SK 127
Sbjct: 100 RT 101
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 178 bits (453), Expect = 6e-59
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 27/122 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
KE+ L DPP P +DL Q TI GP +PY GG+F + + D+P P
Sbjct: 19 YKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASP-- 76
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
PK F T+I+HPN+ +NG IC+++L+ W+ L I
Sbjct: 77 -------------------------PKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGI 111
Query: 126 SK 127
Sbjct: 112 RH 113
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 177 bits (452), Expect = 8e-59
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 27/122 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
Q+EL+ L +A P GD+LF W AT+ GP D+ Y+ + LT+ FP+DYP+KP
Sbjct: 15 QQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKP-- 72
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
P V FTT +HPN++ +G+ICLDIL+ W+ + +
Sbjct: 73 -------------------------PVVKFTTPCWHPNVDQSGNICLDILKENWTASYDV 107
Query: 126 SK 127
Sbjct: 108 RT 109
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 177 bits (452), Expect = 8e-59
Identities = 47/122 (38%), Positives = 62/122 (50%), Gaps = 27/122 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
KE + L DP +A P D+L ++Q TI GP SPY+ G+F L ++ P DYP +
Sbjct: 11 IKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA-- 68
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
PKV F T+IYHPNI+ G ICLD+L++ WSPAL I
Sbjct: 69 -------------------------PKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQI 103
Query: 126 SK 127
Sbjct: 104 RT 105
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 176 bits (448), Expect = 3e-58
Identities = 43/122 (35%), Positives = 56/122 (45%), Gaps = 27/122 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
KE Q L +P A P + ++ I GP DSP++GG F L + P +YP
Sbjct: 11 IKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA-- 68
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
PKV F T+IYHPN++ G ICLDIL+ +WSPAL I
Sbjct: 69 -------------------------PKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI 103
Query: 126 SK 127
Sbjct: 104 RT 105
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 175 bits (445), Expect = 7e-58
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 27/122 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
++ + L +DPPA S P +++ W A I GP D+P+ GG F L++ F DYP KP
Sbjct: 10 MRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKP-- 67
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
P V F +R++HPNI ++GSICLDIL++QWSP +
Sbjct: 68 -------------------------PTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDV 102
Query: 126 SK 127
+
Sbjct: 103 AA 104
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 174 bits (443), Expect = 1e-56
Identities = 46/123 (37%), Positives = 63/123 (51%), Gaps = 28/123 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
QKEL+D+ + + A + F W I GP +PY+GG F L I P DYP+ P
Sbjct: 29 QKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP-- 86
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSN-GSICLDILRSQWSPALT 124
PK+ F T+I+HPNI+S G+ICLD+L+++WSPALT
Sbjct: 87 -------------------------PKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALT 121
Query: 125 ISK 127
I
Sbjct: 122 IRT 124
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 172 bits (438), Expect = 1e-56
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 27/122 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
++ + + D P SA P+ D++ W A I+GP D+PY+ G F L + F +YP KP
Sbjct: 10 MRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKP-- 67
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
P V F + ++HPN+ +NG ICLDIL+++W+P +
Sbjct: 68 -------------------------PHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDV 102
Query: 126 SK 127
+
Sbjct: 103 AS 104
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 172 bits (439), Expect = 1e-56
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 27/122 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
Q+EL L SA P D+LF W TI G + Y+ + L++ FP+ YP+
Sbjct: 36 QQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNA-- 93
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
P V F T YHPN+++ G+I LDIL+ +WS +
Sbjct: 94 -------------------------PTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDV 128
Query: 126 SK 127
Sbjct: 129 RT 130
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 168 bits (429), Expect = 2e-55
Identities = 46/124 (37%), Positives = 66/124 (53%), Gaps = 29/124 (23%)
Query: 6 QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
KE+Q + DP A + V + D+ H + T +GPP +PY+GG F + I P +YPFKP
Sbjct: 7 MKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKP- 65
Query: 65 KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPAL 123
PK+ F T++YHPNI+S G+ICLDIL++ WSP +
Sbjct: 66 --------------------------PKMQFDTKVYHPNISSVTGAICLDILKNAWSPVI 99
Query: 124 TISK 127
T+
Sbjct: 100 TLKS 103
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 169 bits (431), Expect = 6e-55
Identities = 47/124 (37%), Positives = 66/124 (53%), Gaps = 29/124 (23%)
Query: 6 QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
KE+Q + DP A + V + D+ H + T +GPP +PY+GG F + I P +YPFKP
Sbjct: 8 MKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKP- 66
Query: 65 KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPAL 123
PK+ F T++YHPNI+S G+ICLDILR+ WSP +
Sbjct: 67 --------------------------PKMQFDTKVYHPNISSVTGAICLDILRNAWSPVI 100
Query: 124 TISK 127
T+
Sbjct: 101 TLKS 104
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 166 bits (422), Expect = 1e-54
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 28/123 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
QKEL + ++PP C+ ++ W +G ++ Y V+ + I FP +YP KP
Sbjct: 26 QKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKP-- 83
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTR-IYHPNINSNGSICLDILRSQWSPALT 124
P V F + H ++ SNG ICL +L ++P+L+
Sbjct: 84 -------------------------PIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLS 118
Query: 125 ISK 127
IS
Sbjct: 119 ISG 121
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 165 bits (421), Expect = 2e-54
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 28/123 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
QKEL + +PP C+ +++ W +G ++ Y V+ L I FP DYP KP
Sbjct: 12 QKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP-- 69
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTR-IYHPNINSNGSICLDILRSQWSPALT 124
P V F + H ++ SNG ICL +L ++P+L+
Sbjct: 70 -------------------------PIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLS 104
Query: 125 ISK 127
IS
Sbjct: 105 ISG 107
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 166 bits (422), Expect = 5e-54
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 31/126 (24%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
++EL L +PP + D + +A I+G ++PY+ GVF L + P YPF+P
Sbjct: 10 KRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP-- 67
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDIL----RSQWSP 121
P++ F T IYHPNI+S G ICLD+L + W P
Sbjct: 68 -------------------------PQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRP 102
Query: 122 ALTISK 127
+L I+
Sbjct: 103 SLNIAT 108
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 163 bits (415), Expect = 4e-53
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 31/126 (24%)
Query: 6 QKELQDLGRDPPA---QCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
++E +++ + Q V ++ + I GPPD+PY+GG + L I P YPF
Sbjct: 14 KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 73
Query: 63 PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSP 121
P PKV F T+I+HPNI+S G+ICLDIL+ QW+
Sbjct: 74 P---------------------------PKVRFITKIWHPNISSVTGAICLDILKDQWAA 106
Query: 122 ALTISK 127
A+T+
Sbjct: 107 AMTLRT 112
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 164 bits (417), Expect = 7e-53
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 31/126 (24%)
Query: 6 QKELQDLGR---DPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
++E +++ + Q V ++ + I GPPD+PY+GG + L I P YPF
Sbjct: 11 KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 70
Query: 63 PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSP 121
P PKV F T+I+HPNI+S G+ICLDIL+ QW+
Sbjct: 71 P---------------------------PKVRFITKIWHPNISSVTGAICLDILKDQWAA 103
Query: 122 ALTISK 127
A+T+
Sbjct: 104 AMTLRT 109
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 162 bits (413), Expect = 7e-53
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 30/124 (24%)
Query: 6 QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
KEL+++ + V + +L WQ I P + PY G F + I+FP +YPFKP
Sbjct: 8 MKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKP- 65
Query: 65 KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS-QWSPAL 123
PK+ F T+IYHPNI+ G +CL ++ + W PA
Sbjct: 66 --------------------------PKITFKTKIYHPNIDEKGQVCLPVISAENWKPAT 99
Query: 124 TISK 127
+
Sbjct: 100 KTDQ 103
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 162 bits (412), Expect = 1e-52
Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 28/124 (22%)
Query: 5 KQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
++ D + A + GP + Y+GG++ + + P DYPF
Sbjct: 4 LTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFAS- 62
Query: 65 KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPAL 123
P + F ++ HPN++ ++GS+CLD++ W+P
Sbjct: 63 --------------------------PSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLY 96
Query: 124 TISK 127
++
Sbjct: 97 SLVN 100
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 161 bits (410), Expect = 1e-52
Identities = 39/126 (30%), Positives = 51/126 (40%), Gaps = 31/126 (24%)
Query: 6 QKELQDLGRDPPAQCSAGP--VGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKP 63
QKEL L DPP + V + + W + G P + Y+G F L F + YPF
Sbjct: 28 QKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDS 87
Query: 64 PKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTR--IYHPNINSNGSICLDILRSQWSP 121
P+V FT HP++ SNG ICL IL WSP
Sbjct: 88 ---------------------------PQVMFTGENIPVHPHVYSNGHICLSILTEDWSP 120
Query: 122 ALTISK 127
AL++
Sbjct: 121 ALSVQS 126
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 161 bits (409), Expect = 3e-52
Identities = 41/124 (33%), Positives = 54/124 (43%), Gaps = 30/124 (24%)
Query: 6 QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
KEL+DL + PP D ++ W A + P PY F L I FP +YPFKP
Sbjct: 10 VKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKP- 67
Query: 65 KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPAL 123
P + FTT+IYHPN++ NG ICL I+ S+ W P
Sbjct: 68 --------------------------PMIKFTTKIYHPNVDENGQICLPIISSENWKPCT 101
Query: 124 TISK 127
+
Sbjct: 102 KTCQ 105
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 161 bits (409), Expect = 3e-52
Identities = 33/128 (25%), Positives = 44/128 (34%), Gaps = 33/128 (25%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
KE+ +L + P C + H + P + YQGG F P Y P
Sbjct: 20 VKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVP-- 77
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ------W 119
PKV T+I+HPNI G ICL +LR W
Sbjct: 78 -------------------------PKVKCLTKIWHPNITETGEICLSLLREHSIDGTGW 112
Query: 120 SPALTISK 127
+P T+
Sbjct: 113 APTRTLKD 120
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 161 bits (409), Expect = 4e-52
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 30/125 (24%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
++ DL + +A PV +D+ W+ I G +S +QG VF LTIHF ++Y + P
Sbjct: 29 HRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAP-- 86
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSN-GSICLDILRS--QWSPA 122
P V F T +HPN++ + G C+D L + +W+
Sbjct: 87 -------------------------PVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTN 121
Query: 123 LTISK 127
T+S
Sbjct: 122 YTLSS 126
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 160 bits (407), Expect = 6e-52
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 34/129 (26%)
Query: 6 QKELQDLGRDPPAQCSAGPV-----GDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYP 60
Q+E + RD P A P G DL +W+ I G P + ++GG++ LT+ FP +YP
Sbjct: 16 QEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYP 75
Query: 61 FKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ-- 118
+P PK FT ++HPN+ +G++CL IL +
Sbjct: 76 TRP---------------------------PKCRFTPPLFHPNVYPSGTVCLSILNEEEG 108
Query: 119 WSPALTISK 127
W PA+TI +
Sbjct: 109 WKPAITIKQ 117
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 161 bits (409), Expect = 7e-52
Identities = 49/136 (36%), Positives = 63/136 (46%), Gaps = 41/136 (30%)
Query: 6 QKELQDLGR-------------DPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLT 52
KEL D+ + SA VG D+ W+ I GP +PY+GG F L
Sbjct: 38 LKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLD 97
Query: 53 IHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSN-GSIC 111
I P DYP+ P PK+ F T+I+HPNI+S G+IC
Sbjct: 98 IVIPPDYPYNP---------------------------PKMKFVTKIWHPNISSQTGAIC 130
Query: 112 LDILRSQWSPALTISK 127
LDIL+ +WSPALTI
Sbjct: 131 LDILKHEWSPALTIRT 146
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 158 bits (403), Expect = 2e-51
Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 34/129 (26%)
Query: 6 QKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYP 60
Q+E + +D P A PV DL W+A I G + + GGV+ +T+ +P +YP
Sbjct: 10 QEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYP 69
Query: 61 FKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILR--SQ 118
KP PKV F YHPN+ +G+ICL IL
Sbjct: 70 SKP---------------------------PKVKFPAGFYHPNVYPSGTICLSILNEDQD 102
Query: 119 WSPALTISK 127
W PA+T+ +
Sbjct: 103 WRPAITLKQ 111
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 157 bits (398), Expect = 1e-50
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 34/129 (26%)
Query: 6 QKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYP 60
+E + +D P A P + +L +W+ I G +P++GG+F L + F DYP
Sbjct: 13 AQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYP 72
Query: 61 FKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS--Q 118
P PK F ++HPN+ +G++CL IL
Sbjct: 73 SSP---------------------------PKCKFEPPLFHPNVYPSGTVCLSILEEDKD 105
Query: 119 WSPALTISK 127
W PA+TI +
Sbjct: 106 WRPAITIKQ 114
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 157 bits (399), Expect = 1e-49
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 31/126 (24%)
Query: 6 QKELQDLGRDPPA---QCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
++E +++ + Q V ++ + I GPPD+PY+GG + L I P YPF
Sbjct: 63 KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 122
Query: 63 PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSP 121
P PKV F T+I+HPNI+S G+ICLDIL+ QW+
Sbjct: 123 P---------------------------PKVRFITKIWHPNISSVTGAICLDILKDQWAA 155
Query: 122 ALTISK 127
A+T+
Sbjct: 156 AMTLRT 161
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 152 bits (385), Expect = 3e-48
Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 31/126 (24%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQA----TIMGPPDSPYQGGVFFLTIHFPTDYPF 61
+++L L P + D Q+ I+ P + Y G + F YP
Sbjct: 35 KRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPI 94
Query: 62 KPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSP 121
+PPK V +I+HPNI+ G++CL+ILR WSP
Sbjct: 95 EPPK---------------------------VVCLKKIFHPNIDLKGNVCLNILREDWSP 127
Query: 122 ALTISK 127
AL +
Sbjct: 128 ALDLQS 133
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 149 bits (379), Expect = 1e-47
Identities = 47/136 (34%), Positives = 59/136 (43%), Gaps = 41/136 (30%)
Query: 6 QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
KELQ L +D P AGP + ++F W I GPPD+PY GVF + FP DYP P
Sbjct: 10 LKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSP- 68
Query: 65 KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS------- 117
PK+ FT I HPNI NG +C+ IL S
Sbjct: 69 --------------------------PKLTFTPSILHPNIYPNGEVCISILHSPGDDPNM 102
Query: 118 ------QWSPALTISK 127
+WSP ++ K
Sbjct: 103 YELAEERWSPVQSVEK 118
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 149 bits (378), Expect = 2e-47
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 41/136 (30%)
Query: 6 QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
+++L +L ++P SAG + D DL+ W+ I+GPPD+ Y+GGVF + FP DYP +P
Sbjct: 23 RRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP- 81
Query: 65 KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDIL--------- 115
PK+ F T I+HPN++ NG +C+ IL
Sbjct: 82 --------------------------PKMKFITEIWHPNVDKNGDVCISILHEPGEDKYG 115
Query: 116 ----RSQWSPALTISK 127
+W P T+
Sbjct: 116 YEKPEERWLPIHTVET 131
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 149 bits (377), Expect = 4e-47
Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 29/122 (23%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
QK++ +L S DDL +++ I P + Y+ G F + YP PPK
Sbjct: 32 QKDINELNLPKTCDISF-SDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPK 89
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
V T +YHPNI+ G++ L+ILR W P LTI
Sbjct: 90 ---------------------------VKCETMVYHPNIDLEGNVALNILREDWKPVLTI 122
Query: 126 SK 127
+
Sbjct: 123 NS 124
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 148 bits (375), Expect = 5e-47
Identities = 31/136 (22%), Positives = 47/136 (34%), Gaps = 41/136 (30%)
Query: 6 QKELQDLGRD----PPAQCSAGPVG--------DDLFHWQATIMGPPDSPY--QGGVFFL 51
K+L+ L + A S P D +++W + P DS Y G + L
Sbjct: 14 IKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQL 73
Query: 52 TIHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSIC 111
++ F DYP +PP V F T +Y P + G IC
Sbjct: 74 SVLFSDDYPHEPPT---------------------------VRFVTPVYSPLVTGEGGIC 106
Query: 112 LDILRSQWSPALTISK 127
++ W+P S
Sbjct: 107 DRMVNDFWTPDQHASD 122
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 148 bits (375), Expect = 7e-47
Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 32/123 (26%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
++ L L + GP +PY+GGV+ + + P YPFK
Sbjct: 31 DTDVIKLIESKHEVTIL----GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKS-- 84
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRSQWSPALT 124
P + F +I+HPNI+ ++G++CLD++ W+
Sbjct: 85 -------------------------PSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYD 119
Query: 125 ISK 127
++
Sbjct: 120 LTN 122
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 147 bits (373), Expect = 9e-47
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 29/122 (23%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
QK++ +L S DDL +++ I P + Y+ G F + YP PPK
Sbjct: 12 QKDINELNLPKTCDISF-SDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPK 69
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
V T +YHPNI+ G++CL+ILR W P LTI
Sbjct: 70 ---------------------------VKCETMVYHPNIDLEGNVCLNILREDWKPVLTI 102
Query: 126 SK 127
+
Sbjct: 103 NS 104
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 147 bits (373), Expect = 1e-46
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 41/136 (30%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDD-LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
E + L +PP AGP+ ++ F W+A IMGP D+ ++ GVF + FP DYP P
Sbjct: 9 MAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSP- 67
Query: 65 KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS------- 117
PK+ FT ++HPNI +G +C+ IL +
Sbjct: 68 --------------------------PKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMG 101
Query: 118 ------QWSPALTISK 127
+WSP ++ K
Sbjct: 102 YESSAERWSPVQSVEK 117
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 146 bits (371), Expect = 4e-46
Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 28/123 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
+++ + +DP A P+ ++ W + GP +PY+GG + + FP ++PFKP
Sbjct: 20 KQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKP-- 77
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSN-GSICLDILRSQWSPALT 124
P + T N+ D W+PA +
Sbjct: 78 -------------------------PSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWS 112
Query: 125 ISK 127
+S
Sbjct: 113 VST 115
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 144 bits (365), Expect = 6e-46
Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 33/128 (25%)
Query: 6 QKELQDLGRD-PPAQCSAGPVGDD---LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPF 61
+EL+ + P CS G D + W TI+GPP S ++ ++ L+I +YP
Sbjct: 12 LEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPD 71
Query: 62 KPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRS-QW 119
P PKV F ++I P +N + G + D W
Sbjct: 72 SP---------------------------PKVTFISKINLPCVNPTTGEVQTDFHTLRDW 104
Query: 120 SPALTISK 127
A T+
Sbjct: 105 KRAYTMET 112
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 144 bits (366), Expect = 9e-46
Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 36/130 (27%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDD----LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPF 61
+EL++ + + + DD L W I+GPP + Y+ ++ L I YP
Sbjct: 31 LEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPE 90
Query: 62 KPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSI----CLDILRS 117
P P V F T+I +NS+ + + +L
Sbjct: 91 AP---------------------------PFVRFVTKINMNGVNSSNGVVDPRAISVLA- 122
Query: 118 QWSPALTISK 127
+W + +I
Sbjct: 123 KWQNSYSIKV 132
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 145 bits (367), Expect = 1e-45
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 41/136 (30%)
Query: 6 QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
EL+ L +P V + DL++W+ I GPP++ Y+GG F + FP DYP+ P
Sbjct: 13 LLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSP- 71
Query: 65 KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS------- 117
P F T+++HPNI G +C+ IL
Sbjct: 72 --------------------------PAFRFLTKMWHPNIYETGDVCISILHPPVDDPQS 105
Query: 118 ------QWSPALTISK 127
+W+P +
Sbjct: 106 GELPSERWNPTQNVRT 121
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 143 bits (363), Expect = 4e-45
Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 29/124 (23%)
Query: 5 KQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
++ D R + P D + + GP +PY+ G + L + P+DYPFK
Sbjct: 14 NRRREMDYMRLCNSTRKVYP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKS- 71
Query: 65 KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSPAL 123
P + F RI HPN++ +GS+CLD++ W+P
Sbjct: 72 --------------------------PSIGFCNRILHPNVDERSGSVCLDVINQTWTPMY 105
Query: 124 TISK 127
+
Sbjct: 106 QLEN 109
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 138 bits (350), Expect = 4e-43
Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 42/137 (30%)
Query: 6 QKELQDLGRDPPAQ-----------CSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTI 53
KE + + + + S P+ + DL W+A I GP D+PY+ F + I
Sbjct: 12 VKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILI 71
Query: 54 HFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAF-TTRIYHPNINS-NGSIC 111
P+ YP P PK++F I H N+ S G IC
Sbjct: 72 EVPSSYPMNP---------------------------PKISFMQNNILHCNVKSATGEIC 104
Query: 112 LDILRS-QWSPALTISK 127
L+IL+ +W+P +
Sbjct: 105 LNILKPEEWTPVWDLLH 121
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 137 bits (348), Expect = 6e-43
Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 36/130 (27%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDD----LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPF 61
+EL++ + + + DD L W I+GPP + Y+ ++ L I YP
Sbjct: 41 LEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPE 100
Query: 62 KPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSI----CLDILRS 117
P P V F T+I +NS+ + + +L
Sbjct: 101 AP---------------------------PFVRFVTKINMNGVNSSNGVVDPRAISVLA- 132
Query: 118 QWSPALTISK 127
+W + +I
Sbjct: 133 KWQNSYSIKV 142
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 134 bits (338), Expect = 1e-41
Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 33/128 (25%)
Query: 6 QKELQDLGRDPPAQ-CSAGPVGDD---LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPF 61
EL+ + ++ S G D L +W TI G P + ++ ++ LTI +YP
Sbjct: 27 LDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPD 86
Query: 62 KPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDIL--RSQW 119
P P V F T+I +++ G + + L W
Sbjct: 87 SP---------------------------PTVKFDTKIEMSCVDNCGRVIKNNLHILKNW 119
Query: 120 SPALTISK 127
+ TI
Sbjct: 120 NRNYTIET 127
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 115 bits (288), Expect = 1e-33
Identities = 28/139 (20%), Positives = 45/139 (32%), Gaps = 44/139 (31%)
Query: 6 QKELQDLGRDPPAQC---SAGPVGDDLFHWQATIMG-PPDSPYQGGV-----------FF 50
KEL+D+ R + S + D L+ W + PDSP +
Sbjct: 33 MKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYIL 92
Query: 51 LTIHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPN-INSNGS 109
L F ++PF P P V + + G+
Sbjct: 93 LNFSFKDNFPFDP---------------------------PFVRVVLPVLSGGYVLGGGA 125
Query: 110 ICLDILRSQ-WSPALTISK 127
+C+++L Q WS A +I
Sbjct: 126 LCMELLTKQGWSSAYSIES 144
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 117 bits (295), Expect = 2e-33
Identities = 32/139 (23%), Positives = 48/139 (34%), Gaps = 44/139 (31%)
Query: 6 QKELQDLGRDPPAQCSAGPV----GDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPF 61
+E L P S+ + L + I GP D+PY G F ++FP DYP
Sbjct: 82 AQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPS 141
Query: 62 KPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYH-----PNINSNGSICLDILR 116
P P V T H PN+ ++G +CL IL
Sbjct: 142 SP---------------------------PLVNLETTGGHSVRFNPNLYNDGKVCLSILN 174
Query: 117 S-------QWSPAL-TISK 127
+ +W+P + +
Sbjct: 175 TWHGRPEEKWNPQTSSFLQ 193
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.025
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 6/41 (14%)
Query: 7 KELQDLGRDPPAQCSAGPVGDDLFHWQATIMGP---PDSPY 44
+ L +L R G ++ W + P PD Y
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEW---LENPSNTPDKDY 230
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin
binding, protein transport; 1.40A {Homo sapiens} PDB:
3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A
1kpq_A 1m4p_A 1m4q_A 1s1q_A
Length = 146
Score = 30.7 bits (69), Expect = 0.082
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 24/93 (25%)
Query: 36 IMGPPDSPYQGGVFFLTIHF--PTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKV 93
+ G PY+G + + I YP+ PP VK + +K
Sbjct: 56 LTGTIPVPYRGNTYNIPICLWLLDTYPYNPP------------ICFVKPTSSMTIK---- 99
Query: 94 AFTTRIYHPNINSNGSICLDILRSQWSPALTIS 126
++++NG I L L P +
Sbjct: 100 ------TGKHVDANGKIYLPYLHEWKHPQSDLL 126
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane
protein complex, preprotein TRAN membrane insertion,;
2.90A {Pyrococcus furiosus}
Length = 482
Score = 30.0 bits (68), Expect = 0.22
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 71 IEYPLKQPKVKVSRKYPLKL 90
+E PL V V YP++
Sbjct: 262 VEIPLGYRGVTVRGSYPIRF 281
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.41
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 18/45 (40%)
Query: 85 KYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKAS 129
K LK K+ + ++Y + S +PAL I KA+
Sbjct: 19 KQALK--KLQASLKLYADD-------------S--APALAI-KAT 45
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.86
Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 29/90 (32%)
Query: 46 GGVFFLTI---HFPTD---------YPFKPP--KPPKVSIEYPLKQPKVKVSRKYPLKLP 91
+F+L + + P Y P S L+ ++ + LK
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 92 KVAFTTRIYHPNINSNGSICLDILRSQWSP 121
+ N CL +L + +
Sbjct: 242 P--------YEN-------CLLVLLNVQNA 256
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 128
Score = 26.5 bits (58), Expect = 2.1
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 27 DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
++ + T+ + L + YP + P
Sbjct: 35 ENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAP 72
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor
and arginine permease...; endosomal sorting, ESCRT-I;
1.45A {Saccharomyces cerevisiae} PDB: 3r42_A 1uzx_A*
Length = 162
Score = 26.5 bits (58), Expect = 2.2
Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 17/71 (23%)
Query: 51 LTIHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSI 110
+ + P+ YP KPP + + L + I+SNG I
Sbjct: 85 VIMWVPSMYPVKPP------FISINLENFDMNTISSSLPI----------QEYIDSNGWI 128
Query: 111 CLDILRSQWSP 121
L IL W P
Sbjct: 129 ALPILH-AWDP 138
>1dct_A Protein (modification methylase HAEIII); enzyme, cytosine
methylase, transferase/DNA complex; HET: DNA C49 5CM;
2.80A {Haemophilus influenzae biotypeaegyptius} SCOP:
c.66.1.26
Length = 324
Score = 25.4 bits (56), Expect = 5.7
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 5/83 (6%)
Query: 48 VFFLTIHFPTDYPFKPPKPPKVS-----IEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHP 102
VF++ + + PP P + + + LK + K K + Y
Sbjct: 156 VFYIGFRKELNINYLPPIPHLIKPTFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFI 215
Query: 103 NINSNGSICLDILRSQWSPALTI 125
S + + +R PA T+
Sbjct: 216 GSYSTIFMSRNRVRQWNEPAFTV 238
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid
starvation signal response, EIF2alpha kinase,
transferase; NMR {Saccharomyces cerevisiae}
Length = 138
Score = 25.0 bits (54), Expect = 6.3
Identities = 5/27 (18%), Positives = 7/27 (25%)
Query: 39 PPDSPYQGGVFFLTIHFPTDYPFKPPK 65
D L YP+ P+
Sbjct: 54 SVDKEPVESSITLHFAMTPMYPYTAPE 80
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 128
Score = 24.8 bits (54), Expect = 7.5
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 51 LTIHFPTDYPFKPP 64
L H P +YP P
Sbjct: 60 LVFHLPVNYPSCLP 73
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold,
structural genomics, protein structure initiative, PSI;
NMR {Escherichia coli} SCOP: d.58.54.1
Length = 109
Score = 24.4 bits (53), Expect = 9.8
Identities = 4/10 (40%), Positives = 7/10 (70%)
Query: 53 IHFPTDYPFK 62
+ FPT + +K
Sbjct: 31 LEFPTPFTYK 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.438
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,982,335
Number of extensions: 102486
Number of successful extensions: 459
Number of sequences better than 10.0: 1
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 65
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)