RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4279
(129 letters)
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 100 bits (250), Expect = 6e-29
Identities = 94/122 (77%), Positives = 95/122 (77%), Gaps = 27/122 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPP+SPYQGGVFFLTIHFPTDYPFKP
Sbjct: 7 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKP-- 64
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI
Sbjct: 65 -------------------------PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 99
Query: 126 SK 127
SK
Sbjct: 100 SK 101
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 96.3 bits (239), Expect = 1e-27
Identities = 41/131 (31%), Positives = 54/131 (41%), Gaps = 31/131 (23%)
Query: 1 MKKNKQKELQDLGRDPPAQCSAGP--VGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTD 58
M+K QKEL L DPP + V + + W + G P + Y+G F L F +
Sbjct: 4 MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSR 63
Query: 59 YPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTR--IYHPNINSNGSICLDILR 116
YPF P+V FT HP++ SNG ICL IL
Sbjct: 64 YPFDS---------------------------PQVMFTGENIPVHPHVYSNGHICLSILT 96
Query: 117 SQWSPALTISK 127
WSPAL++
Sbjct: 97 EDWSPALSVQS 107
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 95.5 bits (237), Expect = 4e-27
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 41/136 (30%)
Query: 6 QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
+++L +L ++P SAG + D DL+ W+ I+GPPD+ Y+GGVF + FP DYP +P
Sbjct: 5 RRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP- 63
Query: 65 KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS------- 117
PK+ F T I+HPN++ NG +C+ IL
Sbjct: 64 --------------------------PKMKFITEIWHPNVDKNGDVCISILHEPGEDKYG 97
Query: 118 ------QWSPALTISK 127
+W P T+
Sbjct: 98 YEKPEERWLPIHTVET 113
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 93.2 bits (231), Expect = 2e-26
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 28/123 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
QKEL + +PP C+ +++ W +G ++ Y V+ L I FP DYP KP
Sbjct: 4 QKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP-- 61
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALT 124
P V F + H ++ SNG ICL +L ++P+L+
Sbjct: 62 -------------------------PIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLS 96
Query: 125 ISK 127
IS
Sbjct: 97 ISG 99
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 94.1 bits (233), Expect = 2e-26
Identities = 65/122 (53%), Positives = 75/122 (61%), Gaps = 27/122 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
QKEL ++ DPP CSAGP GD+++ W++TI+GPP S Y+GGVFFL I F DYPFKPPK
Sbjct: 8 QKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPK 67
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
V F TRIYH NINS G ICLDIL+ WSPALTI
Sbjct: 68 ---------------------------VTFRTRIYHCNINSQGVICLDILKDNWSPALTI 100
Query: 126 SK 127
SK
Sbjct: 101 SK 102
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 90.2 bits (223), Expect = 1e-24
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 41/136 (30%)
Query: 6 QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
+K+L D+ R P SAG V D D++ W+ ++GPPD+ Y+GG F + FP DYP KP
Sbjct: 6 KKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP- 64
Query: 65 KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS------- 117
PK+ F + I+HPNI+ G++C+ IL
Sbjct: 65 --------------------------PKMKFISEIWHPNIDKEGNVCISILHDPGDDKWG 98
Query: 118 ------QWSPALTISK 127
+W P T+
Sbjct: 99 YERPEERWLPVHTVET 114
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 87.5 bits (216), Expect = 1e-23
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 27/121 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
Q+EL+ L +A P GD+LF W AT+ GP D+ Y+ + LT+ FP+DYP+KPP
Sbjct: 15 QQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPV 74
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
FTT +HPN++ +G+ICLDIL+ W+ + +
Sbjct: 75 VK---------------------------FTTPCWHPNVDQSGNICLDILKENWTASYDV 107
Query: 126 S 126
Sbjct: 108 R 108
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 83.2 bits (205), Expect = 4e-22
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 27/122 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
++ + + D P SA P+ D++ W A I+GP D+PY+ G F L + F +YP KP
Sbjct: 9 MRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKP-- 66
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
P V F + ++HPN+ +NG ICLDIL+++W+P +
Sbjct: 67 -------------------------PHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDV 101
Query: 126 SK 127
+
Sbjct: 102 AS 103
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 81.8 bits (201), Expect = 2e-21
Identities = 42/127 (33%), Positives = 57/127 (44%), Gaps = 27/127 (21%)
Query: 1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYP 60
+ + KE Q L +P A P + ++ I GP DSP++GG F L + P +YP
Sbjct: 3 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYP 62
Query: 61 FKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWS 120
PK F T+IYHPN++ G ICLDIL+ +WS
Sbjct: 63 MAAPKV---------------------------RFMTKIYHPNVDKLGRICLDILKDKWS 95
Query: 121 PALTISK 127
PAL I
Sbjct: 96 PALQIRT 102
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 79.2 bits (195), Expect = 9e-21
Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 36/130 (27%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDD----LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPF 61
+EL++ + + + DD L W I+GPP + Y+ ++ L I YP
Sbjct: 11 LEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPE 70
Query: 62 KPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSI----CLDILRS 117
P P V F T+I +NS+ + + +L +
Sbjct: 71 AP---------------------------PFVRFVTKINMNGVNSSNGVVDPRAISVL-A 102
Query: 118 QWSPALTISK 127
+W + +I
Sbjct: 103 KWQNSYSIKV 112
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 78.5 bits (193), Expect = 2e-20
Identities = 31/128 (24%), Positives = 47/128 (36%), Gaps = 33/128 (25%)
Query: 6 QKELQDLGRD-PPAQCSAGPVGDD---LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPF 61
+EL+ + P CS G D + W TI+GPP S ++ ++ L+I +YP
Sbjct: 10 LEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPD 69
Query: 62 KPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILR-SQW 119
P PKV F ++I P +N G + D W
Sbjct: 70 SP---------------------------PKVTFISKINLPCVNPTTGEVQTDFHTLRDW 102
Query: 120 SPALTISK 127
A T+
Sbjct: 103 KRAYTMET 110
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 78.3 bits (192), Expect = 4e-20
Identities = 47/122 (38%), Positives = 62/122 (50%), Gaps = 27/122 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
KE + L DP +A P D+L ++Q TI GP SPY+ G+F L ++ P DYP +
Sbjct: 9 IKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA-- 66
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
PKV F T+IYHPNI+ G ICLD+L++ WSPAL I
Sbjct: 67 -------------------------PKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQI 101
Query: 126 SK 127
Sbjct: 102 RT 103
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 76.3 bits (187), Expect = 2e-19
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 30/125 (24%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
++ DL + +A PV +D+ W+ I G +S +QG VF LTIHF ++Y + PP
Sbjct: 10 HRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPV 69
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNIN-SNGSICLDILRS--QWSPA 122
F T +HPN++ G C+D L + +W+
Sbjct: 70 VK---------------------------FITIPFHPNVDPHTGQPCIDFLDNPEKWNTN 102
Query: 123 LTISK 127
T+S
Sbjct: 103 YTLSS 107
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 76.3 bits (187), Expect = 2e-19
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 27/122 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
++ + L DPPA S P D++ W+A I GP ++P++ G F L++ F +YP KP
Sbjct: 9 MRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP-- 66
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
P V F ++++HPN+ ++GSICLDIL+++WSP +
Sbjct: 67 -------------------------PTVKFISKMFHPNVYADGSICLDILQNRWSPTYDV 101
Query: 126 SK 127
+
Sbjct: 102 AA 103
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 75.9 bits (186), Expect = 3e-19
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 29/121 (23%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
QK++ +L S DDL +++ I P + Y+ G F + YP PPK
Sbjct: 9 QKDINELNLPKTCDISF-SDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPK 66
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
T +YHPNI+ G++CL+ILR W P LTI
Sbjct: 67 VK---------------------------CETMVYHPNIDLEGNVCLNILREDWKPVLTI 99
Query: 126 S 126
+
Sbjct: 100 N 100
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 75.6 bits (185), Expect = 4e-19
Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 28/123 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
+++ + +DP A P+ ++ W + GP +PY+GG + + FP ++PFKP
Sbjct: 7 KQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKP-- 64
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSN-GSICLDILRSQWSPALT 124
P + T N+ D W+PA +
Sbjct: 65 -------------------------PSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWS 99
Query: 125 ISK 127
+S
Sbjct: 100 VST 102
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 75.6 bits (185), Expect = 5e-19
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 34/129 (26%)
Query: 6 QKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYP 60
+E + +D P A P + +L +W+ I G +P++GG+F L + F DYP
Sbjct: 8 AQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYP 67
Query: 61 FKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS--Q 118
PPK F ++HPN+ +G++ L IL
Sbjct: 68 SSPPKCK---------------------------FEPPLFHPNVYPSGTVSLSILEEDKD 100
Query: 119 WSPALTISK 127
W PA+TI +
Sbjct: 101 WRPAITIKQ 109
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 75.3 bits (184), Expect = 6e-19
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 33/133 (24%)
Query: 1 MKKNK--QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTD 58
M++ ++EL L +PP + D + +A I+G ++PY+ GVF L + P
Sbjct: 1 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPER 60
Query: 59 YPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRS- 117
YPF+PP+ F T IYHPNI+S G ICLD+L+
Sbjct: 61 YPFEPPQI---------------------------RFLTPIYHPNIDSAGRICLDVLKLP 93
Query: 118 ---QWSPALTISK 127
W P+L I+
Sbjct: 94 PKGAWRPSLNIAT 106
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 75.2 bits (184), Expect = 6e-19
Identities = 49/136 (36%), Positives = 63/136 (46%), Gaps = 41/136 (30%)
Query: 6 QKELQDLGR-------------DPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLT 52
KEL D+ + SA VG D+ W+ I GP +PY+GG F L
Sbjct: 7 LKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLD 66
Query: 53 IHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSIC 111
I P DYP+ P PK+ F T+I+HPNI+S G+IC
Sbjct: 67 IVIPPDYPYNP---------------------------PKMKFVTKIWHPNISSQTGAIC 99
Query: 112 LDILRSQWSPALTISK 127
LDIL+ +WSPALTI
Sbjct: 100 LDILKHEWSPALTIRT 115
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 74.8 bits (183), Expect = 8e-19
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 27/128 (21%)
Query: 1 MKKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYP 60
+ K Q+EL L SA P D+LF W TI G + Y+ + L++ FP+ YP
Sbjct: 2 VGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYP 61
Query: 61 FKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWS 120
+ P V F T YHPN+++ G+I LDIL+ +WS
Sbjct: 62 YNA---------------------------PTVKFLTPCYHPNVDTQGNISLDILKEKWS 94
Query: 121 PALTISKA 128
+
Sbjct: 95 ALYDVRTI 102
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 74.8 bits (183), Expect = 9e-19
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 27/121 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
KE+ L DPP P +DL Q TI GP +PY GG+F + + D+P PPK
Sbjct: 12 YKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPK 71
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
F T+I+HPN+ +NG IC+++L+ W+ L I
Sbjct: 72 ---------------------------GYFLTKIFHPNVGANGEICVNVLKRDWTAELGI 104
Query: 126 S 126
Sbjct: 105 R 105
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 74.4 bits (182), Expect = 9e-19
Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 29/124 (23%)
Query: 6 QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
KE+Q + DP A + V + D+ H + T +GPP +PY+GG F + I P +YPFKP
Sbjct: 7 MKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKP- 65
Query: 65 KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSI-CLDILRSQWSPAL 123
PK+ F T++YHPNI+S CLDIL++ WSP +
Sbjct: 66 --------------------------PKMQFDTKVYHPNISSVTGAICLDILKNAWSPVI 99
Query: 124 TISK 127
T+
Sbjct: 100 TLKS 103
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 73.1 bits (179), Expect = 3e-18
Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 24/127 (18%)
Query: 3 KNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFL--TIHFPTDYP 60
+ + L +D + D + G PY+G + + + YP
Sbjct: 20 VRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYP 79
Query: 61 FKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWS 120
+ PP T ++++NG I L L
Sbjct: 80 YNPPICFVKPTSSM----------------------TIKTGKHVDANGKIYLPYLHEWKH 117
Query: 121 PALTISK 127
P +
Sbjct: 118 PQSDLLG 124
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 72.9 bits (178), Expect = 6e-18
Identities = 46/136 (33%), Positives = 57/136 (41%), Gaps = 41/136 (30%)
Query: 6 QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
KELQ L +D P AGP + ++F W I GPPD+PY GVF + FP DYP PP
Sbjct: 9 LKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPP 68
Query: 65 KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQW----- 119
K + FT I HPNI NG +C+ IL S
Sbjct: 69 K---------------------------LTFTPSILHPNIYPNGEVCISILHSPGDDPNM 101
Query: 120 --------SPALTISK 127
SP ++ K
Sbjct: 102 YELAEERWSPVQSVEK 117
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 70.6 bits (172), Expect = 3e-17
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 30/124 (24%)
Query: 6 QKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPP 64
KEL+++ + V + +L WQ I P + PY G F + I+FP +YPFKPP
Sbjct: 5 MKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPP 63
Query: 65 KPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPAL 123
K F T+IYHPNI+ G +CL ++ ++ W PA
Sbjct: 64 KIT---------------------------FKTKIYHPNIDEKGQVCLPVISAENWKPAT 96
Query: 124 TISK 127
+
Sbjct: 97 KTDQ 100
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 67.9 bits (165), Expect = 3e-16
Identities = 38/122 (31%), Positives = 49/122 (40%), Gaps = 27/122 (22%)
Query: 6 QKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPK 65
KEL+DL + PP D ++ P PY F L I FP +YPFKPP
Sbjct: 6 VKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPM 65
Query: 66 PPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTI 125
FTT+IYHPN++ NG ICL I+ S+ T
Sbjct: 66 I---------------------------KFTTKIYHPNVDENGQICLPIISSENWKPCTK 98
Query: 126 SK 127
+
Sbjct: 99 TC 100
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 65.6 bits (159), Expect = 4e-15
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 31/126 (24%)
Query: 6 QKELQDLGRDPP---AQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFK 62
++E +++ + Q V ++ + I GPPD+PY+GG + L I P YPF
Sbjct: 10 KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 69
Query: 63 PPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWSP 121
PPK F T+I+HPNI+S G+ICLDIL+ QW+
Sbjct: 70 PPKV---------------------------RFITKIWHPNISSVTGAICLDILKDQWAA 102
Query: 122 ALTISK 127
A+T+
Sbjct: 103 AMTLRT 108
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 64.7 bits (157), Expect = 6e-15
Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 32/127 (25%)
Query: 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPF 61
K+ ++ L + L + GP +PY+GGV+ + + P YPF
Sbjct: 5 KRRMDTDVVKLIESKHE----VTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPF 60
Query: 62 KPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSIC-LDILRSQWS 120
K P F +I+HPNI+ LD++ W+
Sbjct: 61 KSPSI---------------------------GFMNKIFHPNIDEASGTVCLDVINQTWT 93
Query: 121 PALTISK 127
++
Sbjct: 94 ALYDLTN 100
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 61.3 bits (148), Expect = 2e-13
Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 32/127 (25%)
Query: 2 KKNKQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPF 61
+ ++ + L D + + GP +PY+ G + L + P+DYPF
Sbjct: 2 NRRREMDYMRLCNSTRK----VYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPF 57
Query: 62 KPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINS-NGSICLDILRSQWS 120
K P + F RI HPN++ +GS+CLD++ W+
Sbjct: 58 KSPS---------------------------IGFCNRILHPNVDERSGSVCLDVINQTWT 90
Query: 121 PALTISK 127
P +
Sbjct: 91 PMYQLEN 97
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 58.5 bits (141), Expect = 1e-12
Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 19/95 (20%)
Query: 36 IMGPPDSPYQGGV---FFLTIHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPK 92
I G + G + + P+ YP KPP +S
Sbjct: 58 IYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPF----------------ISINLENFDMN 101
Query: 93 VAFTTRIYHPNINSNGSICLDILRSQWSPALTISK 127
++ I+SNG I L IL A+ +
Sbjct: 102 TISSSLPIQEYIDSNGWIALPILHCWDPAAMNLIM 136
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 57.9 bits (139), Expect = 4e-12
Identities = 27/138 (19%), Positives = 44/138 (31%), Gaps = 42/138 (30%)
Query: 6 QKELQDLGRDPPAQC---SAGPVGDDLFHWQATIMG-PPDSPYQGGV-----------FF 50
KEL+D+ R + S + D L+ W + PDSP +
Sbjct: 10 MKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYIL 69
Query: 51 LTIHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYHPNINSNGSI 110
L F ++PF PP + + G++
Sbjct: 70 LNFSFKDNFPFDPPFVR--------------------------VVLPVLSGGYVLGGGAL 103
Query: 111 CLDILRSQ-WSPALTISK 127
C+++L Q WS A +I
Sbjct: 104 CMELLTKQGWSSAYSIES 121
>d2gtta1 a.260.1.1 (A:6-448) Nucleoprotein {Rabies virus [TaxId:
11292]}
Length = 443
Score = 26.0 bits (57), Expect = 1.4
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 53 IHFPTDYPFKPPKPPKVSIEYPLKQPKVKVSRKYPLKLPKVAFTTRIYH 101
I F + KP + ++ K P +K +K + L K + Y
Sbjct: 1 IVFKVNNQVVSLKPEIIVDQHEYKYPAIKDLKKPCITLGKAPDLNKAYK 49
>d1qhba_ a.111.1.2 (A:) Haloperoxidase (bromoperoxidase) {Red algae
(Corallina officinalis) [TaxId: 35170]}
Length = 595
Score = 26.1 bits (57), Expect = 1.6
Identities = 13/69 (18%), Positives = 17/69 (24%), Gaps = 3/69 (4%)
Query: 1 MKKNKQKELQDLGRDPPAQCSAG---PVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPT 57
+ NK L+ P + DD G F L + F
Sbjct: 413 ISVNKNAFLKSESVFPEVDVLVEELSSILDDSASSNEKQNIADGDVSPGKSFLLPMAFAE 472
Query: 58 DYPFKPPKP 66
PF P
Sbjct: 473 GSPFHPSYG 481
>d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia
coli [TaxId: 562]}
Length = 87
Score = 24.7 bits (54), Expect = 1.8
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 52 TIHFPTDYPFK 62
+ FPT + +K
Sbjct: 8 LLEFPTPFTYK 18
>d2joqa1 d.58.54.2 (A:4-89) Hypothetical protein HP0495
{Helicobacter pylori [TaxId: 210]}
Length = 86
Score = 24.0 bits (52), Expect = 3.2
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 6/39 (15%)
Query: 52 TIHFPTDYPFK------PPKPPKVSIEYPLKQPKVKVSR 84
TI +P + ++ K +E + K++
Sbjct: 9 TIIYPCLWDYRVIMTTKDTSTLKELLETYQRPFKLEFKN 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.438
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 509,986
Number of extensions: 22190
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 36
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.8 bits)