BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4283
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L8I|A Chain A, Crystal Structure Of Ccm3, A Cerebral Cavernous
Malformation Protein Critical For Vascular Integrity
pdb|3L8I|B Chain B, Crystal Structure Of Ccm3, A Cerebral Cavernous
Malformation Protein Critical For Vascular Integrity
pdb|3L8I|C Chain C, Crystal Structure Of Ccm3, A Cerebral Cavernous
Malformation Protein Critical For Vascular Integrity
pdb|3L8I|D Chain D, Crystal Structure Of Ccm3, A Cerebral Cavernous
Malformation Protein Critical For Vascular Integrity
pdb|3RQE|A Chain A, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld1
pdb|3RQE|B Chain B, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld1
pdb|3RQE|C Chain C, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld1
pdb|3RQE|D Chain D, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld1
pdb|3RQF|A Chain A, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld2
pdb|3RQF|B Chain B, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld2
pdb|3RQF|C Chain C, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld2
pdb|3RQF|D Chain D, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld2
pdb|3RQG|A Chain A, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld4
pdb|3RQG|B Chain B, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld4
pdb|3RQG|C Chain C, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld4
pdb|3RQG|D Chain D, Cerebral Cavernous Malformation 3 (Ccm3) In Complex With
Paxillin Ld4
Length = 214
Score = 190 bits (482), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 107/213 (50%), Positives = 149/213 (69%), Gaps = 11/213 (5%)
Query: 1 MTMGE---ESPVTSLI---LPVLFRPILSQLEKRDVQASQTLRAALSRTETANPGFAYDF 54
MTM E E+ TS++ L + P+ ++LE+ ++ A+QTLRAA + E NPG D
Sbjct: 5 MTMEEMKNEAETTSMVSMPLYAVMYPVFNELERVNLSAAQTLRAAFIKAEKENPGLTQDI 64
Query: 55 VVGIMRQGELSVNMNESILRLQGAASDVDAVEYKLNRSEDAFQELNKKSCALKKILSRIP 114
++ I+ + + VN ES+LR+ AA DV+ EY + R E FQ+LN+K+ ALK+ILS+IP
Sbjct: 65 IMKILEKKSVEVNFTESLLRM--AADDVE--EYMIERPEPEFQDLNEKARALKQILSKIP 120
Query: 115 DEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFSKRFSNT 174
DEI DR FL+TIK+IASAIK+LLD VN V N++ALE +K+EFVK+SK FS+T
Sbjct: 121 DEINDRVRFLQTIKDIASAIKELLDTVNNVFKKYQY-QNRRALEHQKKEFVKYSKSFSDT 179
Query: 175 LKDYFKEGQANSVYVSALYLIHQTNMIMVTVKS 207
LK YFK+G+A +V+VSA LIHQTN+I+ T K+
Sbjct: 180 LKTYFKDGKAINVFVSANRLIHQTNLILQTFKT 212
>pdb|3AJM|A Chain A, Crystal Structure Of Programmed Cell Death 10 In Complex
With Inositol 1,3,4,5-Tetrakisphosphate
pdb|3AJM|B Chain B, Crystal Structure Of Programmed Cell Death 10 In Complex
With Inositol 1,3,4,5-Tetrakisphosphate
Length = 213
Score = 189 bits (480), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 104/208 (50%), Positives = 146/208 (70%), Gaps = 8/208 (3%)
Query: 3 MGEESPVTSLI---LPVLFRPILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIM 59
M E+ TS++ L + P+ ++LE+ ++ A+QTLRAA + E NPG D ++ I+
Sbjct: 1 MKNEAETTSMVSMPLYAVMYPVFNELERVNLSAAQTLRAAFIKAEKENPGLTQDIIMKIL 60
Query: 60 RQGELSVNMNESILRLQGAASDVDAVEYKLNRSEDAFQELNKKSCALKKILSRIPDEITD 119
+ + VN ES+LR+ AA DV+ EY + R E FQ+LN+K+ ALK+ILS+IPDEI D
Sbjct: 61 EKKSVEVNFTESLLRM--AADDVE--EYMIERPEPEFQDLNEKARALKQILSKIPDEIND 116
Query: 120 RKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFSKRFSNTLKDYF 179
R FL+TIK+IASAIK+LLD VN V N++ALE +K+EFVK+SK FS+TLK YF
Sbjct: 117 RVRFLQTIKDIASAIKELLDTVNNVFKKYQY-QNRRALEHQKKEFVKYSKSFSDTLKTYF 175
Query: 180 KEGQANSVYVSALYLIHQTNMIMVTVKS 207
K+G+A +V+VSA LIHQTN+I+ T K+
Sbjct: 176 KDGKAINVFVSANRLIHQTNLILQTFKT 203
>pdb|3L8J|A Chain A, Crystal Structure Of Ccm3, A Cerebral Cavernous
Malformation Protein Critical For Vascular Integrity
Length = 202
Score = 187 bits (474), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/201 (50%), Positives = 143/201 (71%), Gaps = 5/201 (2%)
Query: 7 SPVTSLILPVLFRPILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSV 66
+ + S+ L + P+ ++LE+ ++ A+QTLRAA + E NPG D ++ I+ + + V
Sbjct: 5 TSMVSMPLYAVMYPVFNELERVNLSAAQTLRAAFIKAEKENPGLTQDIIMKILEKKSVEV 64
Query: 67 NMNESILRLQGAASDVDAVEYKLNRSEDAFQELNKKSCALKKILSRIPDEITDRKTFLET 126
N ES+LR+ AA DV+ EY + R E FQ+LN+K+ ALK+ILS+IPDEI DR FL+T
Sbjct: 65 NFTESLLRM--AADDVE--EYMIERPEPEFQDLNEKARALKQILSKIPDEINDRVRFLQT 120
Query: 127 IKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFSKRFSNTLKDYFKEGQANS 186
IK+IASAIK+LLD VN V N++ALE +K+EFVK+SK FS+TLK YFK+G+A +
Sbjct: 121 IKDIASAIKELLDTVNNVFKKYQY-QNRRALEHQKKEFVKYSKSFSDTLKTYFKDGKAIN 179
Query: 187 VYVSALYLIHQTNMIMVTVKS 207
V+VSA LIHQTN+I+ T K+
Sbjct: 180 VFVSANRLIHQTNLILQTFKT 200
>pdb|1W61|A Chain A, Proline Racemase In Complex With 2 Molecules Of Pyrrole-2-
Carboxylic Acid (Holo Form)
pdb|1W61|B Chain B, Proline Racemase In Complex With 2 Molecules Of Pyrrole-2-
Carboxylic Acid (Holo Form)
pdb|1W62|A Chain A, Proline Racemase In Complex With One Molecule Of
Pyrrole-2- Carboxylic Acid (hemi Form)
pdb|1W62|B Chain B, Proline Racemase In Complex With One Molecule Of
Pyrrole-2- Carboxylic Acid (hemi Form)
Length = 414
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 158 EQRKREFVKFSKRFSNTLKDYFKEGQANSVYVSALYLIHQTNM 200
Q+KRE ++F K F T D EG+A + S L I +NM
Sbjct: 33 HQQKREIMRFKKSF--TCIDMHTEGEAARIVTSGLPHIPGSNM 73
>pdb|3LNU|A Chain A, Crystal Structure Of Pare Subunit
pdb|3LPS|A Chain A, Crystal Structure Of Pare
Length = 408
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 16/109 (14%)
Query: 53 DFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYKLNRSEDAFQELNKKSCALKKILSR 112
D+ G + +GEL + ES + L A V + DA +E C + +L R
Sbjct: 269 DWAAGWVPEGEL---VQESYVNLIPTAQHGTHVNGLRSGLTDALREF----CDFRNLLPR 321
Query: 113 ----IPDEITDRKTFLETIK----EIASAIKKLLDAVNEVSGFIPGPSN 153
P+++ DR TF+ ++K + + K+ L + + +GFI G ++
Sbjct: 322 GVKLAPEDVWDRVTFVLSLKMTDPQFSGQTKERLSS-RQAAGFIEGAAH 369
>pdb|1ZNN|A Chain A, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|B Chain B, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|C Chain C, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|D Chain D, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|E Chain E, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|F Chain F, Structure Of The Synthase Subunit Of Plp Synthase
Length = 325
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 50 FAYDFVVGIMRQGELSVNMNE--SILRLQGAASDVDAVEYKLNRSEDAFQELNKKSCALK 107
F FV G GE + + E S+LR +G + VE A + + K + ++
Sbjct: 152 FTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVE--------AVRHMRKVNAQIR 203
Query: 108 KILSRIPDEITDRKTFLETIKEIASAIKKL--LDAVNEVSGFIPGPSN 153
K+++ DE+ L E+ IK+L L VN +G + P++
Sbjct: 204 KVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPAD 251
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|B Chain B, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|C Chain C, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
pdb|3BYI|D Chain D, Crystal Structure Of Human Rho Gtpase Activating Protein
15 (arhgap15)
Length = 214
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 64/149 (42%), Gaps = 23/149 (15%)
Query: 19 RPILSQLEKRDVQASQTLRAALS----RTETANPGFAYDFVVGIMRQGELSVNMNESILR 74
RP L L+++ + Q + L R + P F + + ++G L V + I R
Sbjct: 3 RPSLKTLQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRG-LDV---DGIYR 58
Query: 75 LQGAASDVDAVEY------KLNRSEDAFQELNKKSCALKKILSRIPDEITDRKTFLETIK 128
+ G + + + + KLN + +++++ + ALK +P+ + F +
Sbjct: 59 VSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFF----E 114
Query: 129 EIASAIKKL-----LDAVNEVSGFIPGPS 152
+ AIKK ++AV + +P P+
Sbjct: 115 QFVEAIKKQDNNTRIEAVKSLVQKLPPPN 143
>pdb|3TJT|A Chain A, Crystal Structure Analysis Of The Superoxide Dismutase
From Clostridium Difficile
Length = 208
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 88 KLNRSEDAFQEL-NKKSCALKKILSRIPDEITDRKTFLETIKEIASAI--KKLLDAVNEV 144
KLN + + + EL N C L + L +P +I T++ A K +
Sbjct: 41 KLNAALEKYPELYNYSLCELLQNLDSLPKDIA------TTVRNNAGGAYNHKFFFDIMTP 94
Query: 145 SGFIPGPSNKQALEQRKREFVKFSKRFSNTLKDYFKEGQA 184
IP S K+A+++ F KF + F + D F G A
Sbjct: 95 EKTIPSESLKEAIDRDFGSFEKFKQEFQKSALDVFGSGWA 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,047,362
Number of Sequences: 62578
Number of extensions: 179047
Number of successful extensions: 539
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 28
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)