Query psy4283
Match_columns 210
No_of_seqs 49 out of 51
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 21:36:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4025|consensus 100.0 6.8E-86 1.5E-90 556.1 13.0 203 3-209 1-207 (207)
2 PF06840 DUF1241: Protein of u 100.0 7.8E-66 1.7E-70 426.1 10.4 153 3-159 1-154 (154)
3 KOG0201|consensus 84.1 0.45 9.7E-06 46.4 1.0 51 10-60 383-444 (467)
4 PF10191 COG7: Golgi complex c 81.6 46 0.001 34.2 14.2 108 95-207 362-485 (766)
5 PF03623 Focal_AT: Focal adhes 80.8 18 0.00039 30.2 9.1 98 99-206 18-126 (139)
6 cd07639 BAR_ACAP1 The Bin/Amph 74.9 36 0.00078 29.8 9.7 61 121-181 64-127 (200)
7 PF09763 Sec3_C: Exocyst compl 70.4 42 0.0009 33.6 10.2 52 129-180 121-176 (701)
8 PF14523 Syntaxin_2: Syntaxin- 67.8 21 0.00046 26.4 5.9 83 96-179 5-95 (102)
9 PHA02682 ORF080 virion core pr 61.7 8.2 0.00018 34.8 3.1 64 111-174 196-266 (280)
10 PF11945 WASH_WAHD: WAHD domai 61.0 10 0.00022 35.0 3.6 26 124-149 17-42 (297)
11 cd00159 RhoGAP RhoGAP: GTPase- 60.9 19 0.00041 28.1 4.7 114 48-167 1-120 (169)
12 cd07603 BAR_ACAPs The Bin/Amph 59.2 27 0.00059 30.1 5.8 117 31-182 9-128 (200)
13 KOG1937|consensus 57.8 18 0.00039 35.9 4.8 100 101-207 366-470 (521)
14 cd07666 BAR_SNX7 The Bin/Amphi 57.5 36 0.00079 30.6 6.5 42 67-116 34-76 (243)
15 PF06013 WXG100: Proteins of 1 56.1 37 0.0008 23.1 5.1 28 151-178 43-70 (86)
16 cd07636 BAR_GRAF The Bin/Amphi 54.8 41 0.00089 29.7 6.2 84 118-201 67-170 (207)
17 cd04403 RhoGAP_ARHGAP27_15_12_ 54.7 25 0.00054 29.4 4.7 105 45-158 14-129 (187)
18 cd04395 RhoGAP_ARHGAP21 RhoGAP 54.5 23 0.0005 29.7 4.5 108 45-157 16-131 (196)
19 PF03304 Mlp: Mlp lipoprotein 52.4 35 0.00075 29.0 5.2 94 94-188 28-140 (152)
20 cd07624 BAR_SNX7_30 The Bin/Am 48.9 42 0.00092 28.5 5.3 30 86-115 6-35 (200)
21 PF10475 DUF2450: Protein of u 48.2 1.3E+02 0.0027 27.0 8.4 100 98-207 36-162 (291)
22 cd04391 RhoGAP_ARHGAP18 RhoGAP 47.7 15 0.00033 31.3 2.5 104 46-158 21-135 (216)
23 PF08103 Antimicrobial_8: Uper 47.6 18 0.00039 20.4 1.9 14 124-137 3-16 (17)
24 cd04382 RhoGAP_MgcRacGAP RhoGA 47.0 31 0.00068 29.3 4.2 103 47-158 17-128 (193)
25 cd04372 RhoGAP_chimaerin RhoGA 46.8 35 0.00076 28.6 4.4 104 46-158 15-130 (194)
26 cd04398 RhoGAP_fRGD1 RhoGAP_fR 45.9 67 0.0015 26.6 6.0 107 45-158 14-132 (192)
27 PF14412 AHH: A nuclease famil 45.4 75 0.0016 24.0 5.7 73 54-136 32-107 (109)
28 cd04400 RhoGAP_fBEM3 RhoGAP_fB 44.4 38 0.00082 28.3 4.2 107 45-158 20-138 (190)
29 cd04384 RhoGAP_CdGAP RhoGAP_Cd 43.6 32 0.00069 29.1 3.7 107 44-158 15-131 (195)
30 cd07606 BAR_SFC_plant The Bin/ 43.3 66 0.0014 28.0 5.7 112 32-181 9-129 (202)
31 PF05227 CHASE3: CHASE3 domain 42.3 59 0.0013 24.5 4.7 65 85-149 30-94 (138)
32 PHA02693 hypothetical protein; 41.9 50 0.0011 34.1 5.3 69 70-146 176-258 (710)
33 PF11308 GHL1-3: Glycosyl hydr 41.7 10 0.00022 35.0 0.5 64 133-198 243-306 (307)
34 cd04393 RhoGAP_FAM13A1a RhoGAP 41.6 54 0.0012 27.3 4.8 109 44-158 17-132 (189)
35 PF03310 Cauli_DNA-bind: Cauli 40.2 28 0.00061 28.6 2.7 39 126-168 46-92 (121)
36 PF11827 DUF3347: Protein of u 40.2 1.1E+02 0.0024 25.8 6.4 94 44-178 35-128 (174)
37 PF00621 RhoGEF: RhoGEF domain 39.9 92 0.002 24.0 5.6 45 95-143 136-180 (180)
38 TIGR00269 conserved hypothetic 39.9 42 0.00092 25.8 3.6 30 31-60 37-66 (104)
39 cd07313 terB_like_2 tellurium 39.4 1.5E+02 0.0033 21.7 7.0 61 17-78 23-85 (104)
40 COG0394 Wzb Protein-tyrosine-p 38.6 54 0.0012 26.6 4.2 90 48-141 42-138 (139)
41 PF14355 Abi_C: Abortive infec 38.1 75 0.0016 23.0 4.5 38 106-149 8-45 (80)
42 cd04383 RhoGAP_srGAP RhoGAP_sr 37.8 61 0.0013 27.2 4.5 107 44-157 15-130 (188)
43 cd04404 RhoGAP-p50rhoGAP RhoGA 35.5 40 0.00087 28.1 3.1 105 45-157 21-132 (195)
44 smart00324 RhoGAP GTPase-activ 34.9 56 0.0012 26.1 3.7 106 47-159 3-116 (174)
45 cd07635 BAR_GRAF2 The Bin/Amph 34.9 76 0.0016 28.0 4.8 70 112-181 53-133 (207)
46 PF15221 LEP503: Lens epitheli 34.5 35 0.00075 24.9 2.2 18 122-139 38-61 (61)
47 cd04386 RhoGAP_nadrin RhoGAP_n 33.8 50 0.0011 27.8 3.4 104 45-157 18-132 (203)
48 PF10041 DUF2277: Uncharacteri 33.7 51 0.0011 25.3 3.0 31 113-144 36-66 (78)
49 PF08388 GIIM: Group II intron 33.5 60 0.0013 22.8 3.3 25 122-146 3-33 (80)
50 PF09177 Syntaxin-6_N: Syntaxi 32.1 24 0.00053 26.6 1.1 22 114-135 76-97 (97)
51 PHA02674 ORF107 virion morphog 32.0 38 0.00083 24.7 2.0 14 131-144 29-42 (60)
52 PF05478 Prominin: Prominin; 31.1 3.3E+02 0.0071 28.2 9.2 84 96-181 644-729 (806)
53 cd04379 RhoGAP_SYD1 RhoGAP_SYD 30.5 1.2E+02 0.0026 26.1 5.2 79 46-128 17-105 (207)
54 cd04377 RhoGAP_myosin_IX RhoGA 30.2 80 0.0017 26.3 4.0 106 44-158 12-126 (186)
55 PTZ00484 GTP cyclohydrolase I; 30.0 64 0.0014 29.5 3.6 58 110-181 56-114 (259)
56 cd07604 BAR_ASAPs The Bin/Amph 30.0 3.8E+02 0.0083 23.5 8.6 113 32-177 10-126 (215)
57 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 29.6 49 0.0011 28.4 2.7 105 46-158 8-119 (206)
58 cd07637 BAR_ACAP3 The Bin/Amph 29.0 1.5E+02 0.0033 25.7 5.6 59 121-179 64-125 (200)
59 PF14338 Mrr_N: Mrr N-terminal 29.0 1.3E+02 0.0028 22.3 4.5 77 14-94 2-85 (92)
60 cd07630 BAR_SNX_like The Bin/A 28.5 1.3E+02 0.0028 26.0 5.1 73 102-182 16-102 (198)
61 PF04350 PilO: Pilus assembly 27.9 1.3E+02 0.0028 23.2 4.6 37 96-133 29-65 (144)
62 PF01997 Translin: Translin fa 27.2 1.7E+02 0.0037 24.8 5.6 55 108-179 23-77 (200)
63 cd04402 RhoGAP_ARHGAP20 RhoGAP 26.8 58 0.0013 27.3 2.6 107 44-158 12-125 (192)
64 PF08663 HalX: HalX domain; I 26.1 70 0.0015 23.7 2.6 36 93-129 35-70 (71)
65 PRK11391 etp phosphotyrosine-p 25.7 1.1E+02 0.0024 24.6 4.0 82 52-142 46-143 (144)
66 cd04406 RhoGAP_myosin_IXA RhoG 25.6 1.2E+02 0.0025 25.5 4.2 72 44-121 12-89 (186)
67 cd07638 BAR_ACAP2 The Bin/Amph 25.2 2.7E+02 0.0059 24.3 6.5 63 120-182 63-128 (200)
68 PRK09706 transcriptional repre 24.6 2.6E+02 0.0056 21.9 5.8 38 98-137 84-121 (135)
69 PRK07739 flgK flagellar hook-a 24.4 6.1E+02 0.013 24.7 9.4 95 98-206 94-188 (507)
70 PF10428 SOG2: RAM signalling 24.2 2.2E+02 0.0048 27.5 6.3 109 26-149 298-414 (445)
71 PF14523 Syntaxin_2: Syntaxin- 24.1 1.2E+02 0.0026 22.3 3.6 12 163-174 86-97 (102)
72 PF12699 phiKZ_IP: phiKZ-like 24.1 2.1E+02 0.0044 26.6 5.9 69 95-168 256-324 (339)
73 PF05635 23S_rRNA_IVP: 23S rRN 23.6 1.9E+02 0.0042 21.8 4.8 91 12-112 13-109 (110)
74 COG5558 Transposase [DNA repli 23.4 55 0.0012 29.6 1.9 24 174-197 208-235 (261)
75 PF08321 PPP5: PPP5 TPR repeat 23.3 83 0.0018 24.3 2.7 41 166-207 51-91 (95)
76 cd04390 RhoGAP_ARHGAP22_24_25 23.2 69 0.0015 26.8 2.4 69 46-120 21-95 (199)
77 PRK10132 hypothetical protein; 23.2 2.9E+02 0.0063 21.9 5.8 24 168-191 71-94 (108)
78 PF01706 FliG_C: FliG C-termin 23.1 2.5E+02 0.0055 21.4 5.4 52 22-78 1-52 (110)
79 PTZ00059 dynein light chain; P 23.1 63 0.0014 24.4 2.0 14 128-141 37-50 (90)
80 cd07667 BAR_SNX30 The Bin/Amph 23.0 1.9E+02 0.0042 26.1 5.3 27 87-113 44-70 (240)
81 TIGR02492 flgK_ends flagellar 22.8 3.7E+02 0.008 24.4 7.2 94 98-205 82-175 (322)
82 cd07590 BAR_Bin3 The Bin/Amphi 22.4 3.8E+02 0.0083 23.7 7.0 60 92-161 16-75 (225)
83 cd07641 BAR_ASAP1 The Bin/Amph 22.4 2.1E+02 0.0045 25.7 5.3 69 120-188 65-141 (215)
84 PF03943 TAP_C: TAP C-terminal 22.4 57 0.0012 22.4 1.4 27 52-78 1-27 (51)
85 PRK07081 acyl carrier protein; 22.0 78 0.0017 23.3 2.3 31 112-143 52-82 (83)
86 PF06015 Chordopox_A30L: Chord 21.9 74 0.0016 24.0 2.1 17 129-145 27-43 (71)
87 cd04407 RhoGAP_myosin_IXB RhoG 21.9 1.2E+02 0.0025 25.5 3.5 106 44-158 12-126 (186)
88 PRK10126 tyrosine phosphatase; 21.5 1.6E+02 0.0035 23.5 4.2 89 52-143 46-144 (147)
89 cd07601 BAR_APPL The Bin/Amphi 21.5 2.8E+02 0.0061 24.5 5.9 63 119-181 66-131 (215)
90 KOG3091|consensus 21.1 6.1E+02 0.013 25.6 8.7 121 52-183 372-493 (508)
91 cd07909 YciF YciF bacterial st 20.9 1.7E+02 0.0037 24.2 4.3 78 122-203 3-83 (147)
92 TIGR00754 bfr bacterioferritin 20.8 1.7E+02 0.0038 23.4 4.2 57 20-76 85-141 (157)
93 cd04375 RhoGAP_DLC1 RhoGAP_DLC 20.8 2.5E+02 0.0054 24.3 5.4 107 45-160 18-133 (220)
94 PRK03826 5'-nucleotidase; Prov 20.8 3.6E+02 0.0077 23.2 6.4 33 92-128 88-120 (195)
95 cd04399 RhoGAP_fRGD2 RhoGAP_fR 20.7 3.9E+02 0.0084 23.0 6.6 32 13-44 15-64 (212)
96 PF07328 VirD1: T-DNA border e 20.7 1.4E+02 0.003 25.4 3.6 48 125-173 74-121 (147)
97 PF05565 Sipho_Gp157: Siphovir 20.3 3.6E+02 0.0077 22.3 6.1 69 108-180 12-85 (162)
98 PF10398 DUF2443: Protein of u 20.3 2.1E+02 0.0046 21.9 4.3 53 70-144 20-72 (79)
99 PF08023 Antimicrobial_2: Frog 20.2 52 0.0011 21.2 0.8 22 122-143 1-27 (33)
No 1
>KOG4025|consensus
Probab=100.00 E-value=6.8e-86 Score=556.06 Aligned_cols=203 Identities=51% Similarity=0.689 Sum_probs=195.6
Q ss_pred CCCCCCc----cccchhhhHhHHHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHHHhhcc
Q psy4283 3 MGEESPV----TSLILPVLFRPILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESILRLQGA 78 (210)
Q Consensus 3 m~~~~~~----~S~~L~~li~Pvl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~ 78 (210)
|+|++++ .++||+.+++|+|.++++.|++|+|+||+||.++|+++|||++||++.||++++++||++||+|||+..
T Consensus 1 M~E~~~~t~smv~~~Ly~~~~p~f~qleR~d~~Aaq~LrtA~~k~Eq~nPgf~yD~~~~il~~~~l~VNl~Es~LRm~~~ 80 (207)
T KOG4025|consen 1 MNEEGGYTGSMVYQCLYSPVMPKFKQLERDDPRAAQALRTALTKCEQANPGFLYDFTKVILDDSELSVNLQESYLRMHDT 80 (207)
T ss_pred CCCccccchhhhhhhhhHHHHHHHHHHhccChhHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhhccccchHHHHHHhhcc
Confidence 7888655 455699999999999999999999999999999999999999999999999999999999999999954
Q ss_pred CCCCccchhcccCChHHHHHHHHhHHHHHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHH
Q psy4283 79 ASDVDAVEYKLNRSEDAFQELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALE 158 (210)
Q Consensus 79 ~~~~~~~e~~~~~~e~~f~el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le 158 (210)
+ |++||+++|.|++|||||+||.+||+|||||||||+||.+||||||+||||||+|||+||+|++.+| -++|+|||
T Consensus 81 ~---d~ney~v~r~E~~fqeLn~ka~aLk~iLSriPdEinDR~~FLeTIK~IASaIKkLLd~vN~v~~~~p-~t~~~AvE 156 (207)
T KOG4025|consen 81 S---DTNEYIVSRYEQDFQELNKKAIALKRILSRIPDEINDRHAFLETIKLIASAIKKLLDAVNAVYRIVP-LTAQPAVE 156 (207)
T ss_pred c---chhhHhhcCCCccHHHHHHHHHHHHHHHHhCcHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccHHHH
Confidence 3 8899999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred HhhhhhhhcchhhhHHHHHHhhcCCcchhhhhHHHHHHHHHHHHHHHhhhc
Q psy4283 159 QRKREFVKFSKRFSNTLKDYFKEGQANSVYVSALYLIHQTNMIMVTVKSKC 209 (210)
Q Consensus 159 ~~KreFV~ySKrFS~TLK~YFkd~~~~~Vf~SAn~Li~qTn~il~t~k~~~ 209 (210)
+|||||||||||||||||+|||||++..||+||++||||||+|+.|+|++|
T Consensus 157 ~rKkEFVkYSK~FS~TLKtYFKdGk~~~~~~~~~~~~~~~n~~~~~~Kt~~ 207 (207)
T KOG4025|consen 157 KRKKEFVKYSKRFSNTLKTYFKDGKKCIRVRQPTGFPNDNDSPHNQRKTSP 207 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceeEEeccccCCCcCccHHHhhcCCC
Confidence 999999999999999999999999999999999999999999999999876
No 2
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=100.00 E-value=7.8e-66 Score=426.12 Aligned_cols=153 Identities=62% Similarity=0.928 Sum_probs=145.4
Q ss_pred CCCCC-CccccchhhhHhHHHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCC
Q psy4283 3 MGEES-PVTSLILPVLFRPILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASD 81 (210)
Q Consensus 3 m~~~~-~~~S~~L~~li~Pvl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~ 81 (210)
|++|+ +++|++||||++|+|++|+++|.+|+|+||+||.+||++|||||||||++||++.+++|||+|++|||||+
T Consensus 1 m~~e~~~v~s~~L~~li~Pvl~eL~~~d~~A~q~Lr~Af~kAE~~~PGft~d~v~~ll~~~~~~vnl~es~LR~~~~--- 77 (154)
T PF06840_consen 1 MNEEGGYVASLALQCLIRPVLDELEQKDSDAIQTLRAAFTKAEKSSPGFTDDFVKGLLERSKLNVNLTESLLRMAGS--- 77 (154)
T ss_dssp -HHHSSSGGGHHHHHTHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHTHHHHHHHHHHHHHHTTG---
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHhcCCCCChhHHHHHhccc---
Confidence 66775 66999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhcccCChHHHHHHHHhHHHHHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHH
Q psy4283 82 VDAVEYKLNRSEDAFQELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQ 159 (210)
Q Consensus 82 ~~~~e~~~~~~e~~f~el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~ 159 (210)
+++||.++|++++||+|++||++||+|||||||||+||++||||||+||||||+||||||+|++++|++++||+|||
T Consensus 78 -~~~~~~~~~~~~~~~el~~~A~~LK~iLSrIPdei~dR~~FL~tIK~IAsaIK~lLdAvn~v~~~~~~~~~k~ale~ 154 (154)
T PF06840_consen 78 -APQEYRLSRREPEFQELNKRATALKRILSRIPDEISDRRTFLETIKEIASAIKKLLDAVNEVFKNIPGPTQKQALEQ 154 (154)
T ss_dssp -GTTTTS-SS-SHHHHHHHHHHHHHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTST-TSSCHHHHH
T ss_pred -cccchhcCCCcHHHHHHHHHHHHHHHHHhcCcHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhcC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999996
No 3
>KOG0201|consensus
Probab=84.13 E-value=0.45 Score=46.40 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=41.0
Q ss_pred cccchhhhHhHHHHHHhhhcH-----------HHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4283 10 TSLILPVLFRPILSQLEKRDV-----------QASQTLRAALSRTETANPGFAYDFVVGIMR 60 (210)
Q Consensus 10 ~S~~L~~li~Pvl~eLe~kd~-----------~A~qtLRaAf~kAE~~~PGft~dfV~~IL~ 60 (210)
-|.|++.+..|++..+..+.. ++...||.+|.-+|..|||.+++++..++.
T Consensus 383 ~s~~~~~~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~pg~~~~~~~~l~~ 444 (467)
T KOG0201|consen 383 DSACPSPIPSPVFGLLNCKLSSTIRDPSAGSSGALDSLRNAFSSAENSCPGICDDLISELML 444 (467)
T ss_pred ccccccCCCCcccccccccccccccccCCccccchHhhhhhHhhhhhcCCCccchhhhHHHH
Confidence 456677777776666655333 489999999999999999999999999885
No 4
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=81.60 E-value=46 Score=34.20 Aligned_cols=108 Identities=19% Similarity=0.271 Sum_probs=78.5
Q ss_pred HHHHHHHhHHHHHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcC----CCCchhHHHHHhhhhhhhcchh
Q psy4283 95 AFQELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFI----PGPSNKQALEQRKREFVKFSKR 170 (210)
Q Consensus 95 ~f~el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~----~~~~~k~~le~~KreFV~ySKr 170 (210)
.|-++++ ..|..-|+.||-+-. .+.++++.|.+++-++.+..++-+..+ .|-..-..+.--+.-|.+|..+
T Consensus 362 ~Yg~lE~--~~L~~~L~~l~~~~~---~~~d~v~~L~~s~~k~f~lae~Av~RC~~fT~G~~~~~Ll~Ald~~~~~y~~~ 436 (766)
T PF10191_consen 362 RYGELER--RFLSAQLSALDLESA---ELSDAVRRLEESIPKLFGLAEEAVDRCIAFTGGYGVPGLLKALDSIFSQYLSS 436 (766)
T ss_pred HHHHHHH--HHHHHHHHhcccCCC---cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHH
Confidence 5556664 578888899987533 889999999999999888777665532 2223334566677889999999
Q ss_pred hhHHHHHHhhcCCcc------------hhhhhHHHHHHHHHHHHHHHhh
Q psy4283 171 FSNTLKDYFKEGQAN------------SVYVSALYLIHQTNMIMVTVKS 207 (210)
Q Consensus 171 FS~TLK~YFkd~~~~------------~Vf~SAn~Li~qTn~il~t~k~ 207 (210)
|+.||++.-+-.+.. +.|--|.+|+.-.+.++.-+..
T Consensus 437 ~~~~l~~lr~~~~~~~~~~~~~~~eDWs~fQ~aL~LL~~~g~l~~rl~~ 485 (766)
T PF10191_consen 437 LTATLRSLRKSCGLDSTATSSASSEDWSLFQNALQLLQTCGELLSRLSQ 485 (766)
T ss_pred HHHHHHHHHHHcCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999877543222 4688888888887777765543
No 5
>PF03623 Focal_AT: Focal adhesion targeting region; InterPro: IPR005189 Focal adhesion kinase (FAK) is a tyrosine kinase found in focal adhesions, intracellular signalling complexes that are formed following engagement of the extracellular matrix by integrins. The C-terminal "focal adhesion targeting" (FAT) region is necessary and sufficient for localizing FAK to focal adhesions. The crystal structure of FAT shows it forms a four-helix bundle that resembles those found in two other proteins involved in cell adhesion, alpha-catenin and vinculin []. The binding of FAT to the focal adhesion protein, paxillin, requires the integrity of the helical bundle, whereas binding to another focal adhesion protein, talin, does not.; GO: 0004713 protein tyrosine kinase activity, 0004871 signal transducer activity, 0006468 protein phosphorylation, 0007172 signal complex assembly, 0005925 focal adhesion; PDB: 1K05_C 1OW8_C 1OW7_C 3S9O_C 3B71_B 1K04_A 1OW6_C 3GM1_B 3GM3_A 3GM2_A ....
Probab=80.82 E-value=18 Score=30.25 Aligned_cols=98 Identities=18% Similarity=0.331 Sum_probs=65.0
Q ss_pred HHHhHHHHHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhhhhhh----------hcc
Q psy4283 99 LNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFV----------KFS 168 (210)
Q Consensus 99 l~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~KreFV----------~yS 168 (210)
+=+--..|+.=...-|. ..|+..+|.|-.++|+||.+|.+++..+| ++.++.+|.-+|-.= |-.
T Consensus 18 VVkaV~~Ls~~v~~~~~-----~~y~~~VK~VG~~Lr~Ll~sVd~~~~~l~-~s~~~EVema~klL~~DM~eLi~~mkla 91 (139)
T PF03623_consen 18 VVKAVMQLSNSVQTAKP-----EEYVDLVKNVGLALRDLLTSVDQILPSLP-SSVRREVEMAHKLLSKDMAELISAMKLA 91 (139)
T ss_dssp HHHHHHHHHHHTTTSSH-----HHHHHHHHHHHHHHHHHHHHHHHHGGGSH-TTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCh-----HHHHHHHHHHHHHHHHHHHHHHHhhccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555552 36999999999999999999999999998 666888888776443 333
Q ss_pred hhhhHH-HHHHhhcCCcchhhhhHHHHHHHHHHHHHHHh
Q psy4283 169 KRFSNT-LKDYFKEGQANSVYVSALYLIHQTNMIMVTVK 206 (210)
Q Consensus 169 KrFS~T-LK~YFkd~~~~~Vf~SAn~Li~qTn~il~t~k 206 (210)
.+||+| |.+=| ..++-.+|+.|-.=...++.+|-
T Consensus 92 q~~~~ttl~~ey----rr~ml~aah~LA~daKnLlD~VD 126 (139)
T PF03623_consen 92 QQNSNTTLDEEY----RRQMLSAAHVLAMDAKNLLDVVD 126 (139)
T ss_dssp HHTTTSTTHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCchHHHHH----HHHHHHHHHHHHHhHHHHHHHHH
Confidence 444444 22222 23566677777666666666653
No 6
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=74.95 E-value=36 Score=29.79 Aligned_cols=61 Identities=13% Similarity=0.191 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcC-CC--CchhHHHHHhhhhhhhcchhhhHHHHHHhhc
Q psy4283 121 KTFLETIKEIASAIKKLLDAVNEVSGFI-PG--PSNKQALEQRKREFVKFSKRFSNTLKDYFKE 181 (210)
Q Consensus 121 ~~FL~tIKeIAsaIK~lLdavN~v~~~~-~~--~~~k~~le~~KreFV~ySKrFS~TLK~YFkd 181 (210)
..|..++++|.+.=+.|+|.+|.++... .. -..-+.+-..||.|-|.|..+-..|..+=+-
T Consensus 64 ~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al~K~~~~ 127 (200)
T cd07639 64 EKFSDGLNHILDSHAELLEATQFSFKQQLQLLVKEDLRGFRDARKEFERGAESLEAALQHNAET 127 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHHHHHHhhc
Confidence 3699999999999999999998765421 11 1223457789999999999999999887763
No 7
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=70.43 E-value=42 Score=33.65 Aligned_cols=52 Identities=23% Similarity=0.459 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhhhhhc---CC-CCchhHHHHHhhhhhhhcchhhhHHHHHHhh
Q psy4283 129 EIASAIKKLLDAVNEVSGF---IP-GPSNKQALEQRKREFVKFSKRFSNTLKDYFK 180 (210)
Q Consensus 129 eIAsaIK~lLdavN~v~~~---~~-~~~~k~~le~~KreFV~ySKrFS~TLK~YFk 180 (210)
.|-+|...|-.|++.+-.. .. +-..=+||.+|+.+|-+.++.|+..+++|+.
T Consensus 121 ~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~~~~F~~r~~~~l~ 176 (701)
T PF09763_consen 121 KIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKVSDKFCKRLSRFLN 176 (701)
T ss_pred HHHHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555553221 11 1225678888888888766666666655543
No 8
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=67.75 E-value=21 Score=26.41 Aligned_cols=83 Identities=17% Similarity=0.341 Sum_probs=41.3
Q ss_pred HHHHHHhHHHHHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC--------CchhHHHHHhhhhhhhc
Q psy4283 96 FQELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPG--------PSNKQALEQRKREFVKF 167 (210)
Q Consensus 96 f~el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~--------~~~k~~le~~KreFV~y 167 (210)
.++++.--..|++.++.|=.. .|-..+-+-|.++-..+.+|...+++.++.+.. +..|-..++-.++|-.-
T Consensus 5 l~~in~~v~~l~k~~~~lGt~-~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~ 83 (102)
T PF14523_consen 5 LFKINQNVSQLEKLVNQLGTP-RDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEA 83 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH-SS-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 345666666666666665432 444455555555555555555555544443211 23344555555666555
Q ss_pred chhhhHHHHHHh
Q psy4283 168 SKRFSNTLKDYF 179 (210)
Q Consensus 168 SKrFS~TLK~YF 179 (210)
.++|...-+.|-
T Consensus 84 l~~fq~~q~~~~ 95 (102)
T PF14523_consen 84 LQEFQKAQRRYA 95 (102)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555553
No 9
>PHA02682 ORF080 virion core protein; Provisional
Probab=61.68 E-value=8.2 Score=34.83 Aligned_cols=64 Identities=20% Similarity=0.300 Sum_probs=45.1
Q ss_pred ccCCccccch-----HHHHHHHHHHHHHHHHHHHHHhhhhhcCCC--CchhHHHHHhhhhhhhcchhhhHH
Q psy4283 111 SRIPDEITDR-----KTFLETIKEIASAIKKLLDAVNEVSGFIPG--PSNKQALEQRKREFVKFSKRFSNT 174 (210)
Q Consensus 111 SrIPdei~dR-----~~FL~tIKeIAsaIK~lLdavN~v~~~~~~--~~~k~~le~~KreFV~ySKrFS~T 174 (210)
+||||.|-|- ...-.-+-+||.+.++|-.--|.+..-+.. ++-+-+.+..||-|...+-.=++|
T Consensus 196 ~ripdkv~~~d~~~k~~ikkeladiadsvrdl~aeS~~LtrDIE~AKstTq~AIdDLRrLl~~~~v~~~~t 266 (280)
T PHA02682 196 PRIPDKIIDADNDDKDLIKKELADIADSVRDLNAESLSLTRDIENAKSTTQAAIDDLRRLLTGGGVARRDT 266 (280)
T ss_pred ccCchhhhhcccchHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHhcCCccccCC
Confidence 7899998543 444455668999999987666666555544 556679999999998775444444
No 10
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=60.99 E-value=10 Score=35.03 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy4283 124 LETIKEIASAIKKLLDAVNEVSGFIP 149 (210)
Q Consensus 124 L~tIKeIAsaIK~lLdavN~v~~~~~ 149 (210)
-|||..||.++..|-.++|+||..+.
T Consensus 17 eEti~qi~~aL~~L~~v~~diF~rI~ 42 (297)
T PF11945_consen 17 EETILQIADALEYLDKVSNDIFSRIS 42 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999765
No 11
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=60.88 E-value=19 Score=28.11 Aligned_cols=114 Identities=21% Similarity=0.352 Sum_probs=58.0
Q ss_pred CCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchhcccCCh----HHHHHHHHhHHHHHHHhccCCccccchHHH
Q psy4283 48 PGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYKLNRSE----DAFQELNKKSCALKKILSRIPDEITDRKTF 123 (210)
Q Consensus 48 PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~~~~~e----~~f~el~~kA~~LK~iLSrIPdei~dR~~F 123 (210)
|.+.++++.-|-+ .|+. +|-+.|..|.......=--.+++.. .+-.+...=|..||+.|.++|+-+=... +
T Consensus 1 P~~l~~~~~~l~~-~~~~---~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~-~ 75 (169)
T cd00159 1 PLIIEKCIEYLEK-NGLN---TEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFE-L 75 (169)
T ss_pred ChHHHHHHHHHHH-cCCC---cCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHH-H
Confidence 5666677755554 4443 4556677776322100000111111 2334566778999999999999876663 3
Q ss_pred HHHHHHHHHH--HHHHHHHHhhhhhcCCCCchhHHHHHhhhhhhhc
Q psy4283 124 LETIKEIASA--IKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKF 167 (210)
Q Consensus 124 L~tIKeIAsa--IK~lLdavN~v~~~~~~~~~k~~le~~KreFV~y 167 (210)
.+.+.++++. ...-.+.+-.++...| +.++..|..-=.-|.+-
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~i~~Lp-~~~~~~L~~l~~~l~~v 120 (169)
T cd00159 76 YDEFIELAKIEDEEERIEALKELLKSLP-PENRDLLKYLLKLLHKI 120 (169)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHH
Confidence 4444444431 1122233333333444 45555555444434333
No 12
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=59.17 E-value=27 Score=30.13 Aligned_cols=117 Identities=14% Similarity=0.147 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchhcccCChHHHHHHHHhHHHHHHHh
Q psy4283 31 QASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYKLNRSEDAFQELNKKSCALKKIL 110 (210)
Q Consensus 31 ~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~~~~~e~~f~el~~kA~~LK~iL 110 (210)
..+..|+..+.+.-+.|-++.+-... ... -+..+.++|-.+.+. ..+| +. + +.+
T Consensus 9 ~~~~~l~~~l~kl~K~~~~~~~ag~~-~~~---a~~~F~~~L~~~~~~----~~~d--------~~--i---~~~----- 62 (200)
T cd07603 9 ADVSELETRLEKLLKLCNGMVDSGKT-YVN---ANSLFVNSLNDLSDY----FRDD--------SL--V---QNC----- 62 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHhcc----cCCc--------HH--H---HHH-----
Confidence 46777888888887777665542221 111 124556666666555 2222 10 1 233
Q ss_pred ccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC---CchhHHHHHhhhhhhhcchhhhHHHHHHhhcC
Q psy4283 111 SRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPG---PSNKQALEQRKREFVKFSKRFSNTLKDYFKEG 182 (210)
Q Consensus 111 SrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~---~~~k~~le~~KreFV~ySKrFS~TLK~YFkd~ 182 (210)
-..|.++++||.+..+.|++-+|.++..-.. -..-+.+-..||.|=+.|+.|-..|--|=.-.
T Consensus 63 ---------l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~ 128 (200)
T cd07603 63 ---------LNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVKNAQAP 128 (200)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3469999999999999999999887653210 12234677899999999999999998887654
No 13
>KOG1937|consensus
Probab=57.82 E-value=18 Score=35.91 Aligned_cols=100 Identities=18% Similarity=0.310 Sum_probs=61.6
Q ss_pred HhHHHHHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhhhh-hhhcchhhhHHHHHHh
Q psy4283 101 KKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKRE-FVKFSKRFSNTLKDYF 179 (210)
Q Consensus 101 ~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~Kre-FV~ySKrFS~TLK~YF 179 (210)
.-+..|+.-|+++|+..+ |....+-||||-..|+|.=.-+-.+. +..+.|..++-. =-+-=++|--|=-=-|
T Consensus 366 el~~~Lrsele~lp~dv~-rk~ytqrikEi~gniRKq~~DI~Kil------~etreLqkq~ns~se~L~Rsfavtdellf 438 (521)
T KOG1937|consen 366 ELAEKLRSELEKLPDDVQ-RKVYTQRIKEIDGNIRKQEQDIVKIL------EETRELQKQENSESEALNRSFAVTDELLF 438 (521)
T ss_pred HHHHHHHHHHhcCCchhH-HHHHHHHHHHHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 345679999999999999 99999999999999998755444332 234455544421 1122244555544457
Q ss_pred hcCCcc----hhhhhHHHHHHHHHHHHHHHhh
Q psy4283 180 KEGQAN----SVYVSALYLIHQTNMIMVTVKS 207 (210)
Q Consensus 180 kd~~~~----~Vf~SAn~Li~qTn~il~t~k~ 207 (210)
++++-. .+|-+-.+|=-=.|.|+.++..
T Consensus 439 ~sakhddhvR~aykllt~iH~nc~ei~E~i~~ 470 (521)
T KOG1937|consen 439 MSAKHDDHVRLAYKLLTRIHLNCMEILEMIRE 470 (521)
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776543 3344444433334666666543
No 14
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=57.48 E-value=36 Score=30.56 Aligned_cols=42 Identities=12% Similarity=0.287 Sum_probs=32.7
Q ss_pred ccchhHHHhhccCCCCccchhc-ccCChHHHHHHHHhHHHHHHHhccCCcc
Q psy4283 67 NMNESILRLQGAASDVDAVEYK-LNRSEDAFQELNKKSCALKKILSRIPDE 116 (210)
Q Consensus 67 n~~EslLr~a~~~~~~~~~e~~-~~~~e~~f~el~~kA~~LK~iLSrIPde 116 (210)
++.+++.-+++. |+ +.++.++|.|+..++..|-.-|+.|+--
T Consensus 34 ~~~d~~~~~~s~--------~~~v~~~~~eF~Emkey~d~L~~~L~~ieki 76 (243)
T cd07666 34 RMGQTVKAVASS--------VRGVKNRPEEFTEMNEYVEAFSQKINVLDKI 76 (243)
T ss_pred hhHHHHHHHHHh--------ccccCCCCHHHHHHHHHHHHHHHHhhhhHHH
Confidence 344666666665 77 6888899999999999999888888643
No 15
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=56.14 E-value=37 Score=23.09 Aligned_cols=28 Identities=11% Similarity=0.281 Sum_probs=14.8
Q ss_pred CchhHHHHHhhhhhhhcchhhhHHHHHH
Q psy4283 151 PSNKQALEQRKREFVKFSKRFSNTLKDY 178 (210)
Q Consensus 151 ~~~k~~le~~KreFV~ySKrFS~TLK~Y 178 (210)
+....+....-.+|-..-.+.-+.|.++
T Consensus 43 G~a~~af~~~~~~~~~~~~~~~~~L~~~ 70 (86)
T PF06013_consen 43 GEAADAFQDKFEEWNQAFRQLNEALEEL 70 (86)
T ss_dssp SSTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555444
No 16
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=54.82 E-value=41 Score=29.68 Aligned_cols=84 Identities=11% Similarity=0.249 Sum_probs=60.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhhcC-CC--CchhHHHHHhhhhhhhcchhhhHHHHHHhh---cCCcchh----
Q psy4283 118 TDRKTFLETIKEIASAIKKLLDAVNEVSGFI-PG--PSNKQALEQRKREFVKFSKRFSNTLKDYFK---EGQANSV---- 187 (210)
Q Consensus 118 ~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~-~~--~~~k~~le~~KreFV~ySKrFS~TLK~YFk---d~~~~~V---- 187 (210)
+.-+.|.++|.+|.+.=..|+|-++..+... .. -..-+.+-..||.|-|.|-.|-..|-.+=. .++++.|
T Consensus 67 ~~L~kF~~~L~ei~~~r~~L~~qa~~~l~~~L~~F~kedi~~~Ke~kK~FdK~se~~~~al~k~~~ls~k~K~~~~eEA~ 146 (207)
T cd07636 67 RSLQEFAAVLRNLEDERTRMIENASEVLITPLEKFRKEQIGAAKEAKKKYDKETEKYCAVLEKHLNLSSKKKESQLHEAD 146 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHHHhcCcccCCchHHHHHH
Confidence 5567899999999999999999998775521 11 233356778899999999999999988874 3344322
Q ss_pred ----------hhhHHHHHHHHHHH
Q psy4283 188 ----------YVSALYLIHQTNMI 201 (210)
Q Consensus 188 ----------f~SAn~Li~qTn~i 201 (210)
+-+|.-++.|.|.|
T Consensus 147 ~~L~~~r~~F~~~sLdYV~qi~~v 170 (207)
T cd07636 147 SQVDLVRQHFYEVSLEYVFKVQEV 170 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666776654
No 17
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=54.71 E-value=25 Score=29.36 Aligned_cols=105 Identities=19% Similarity=0.370 Sum_probs=63.0
Q ss_pred hcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchh--cccCCh------HHHHHHHHhHHHHHHHhccCCcc
Q psy4283 45 TANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEY--KLNRSE------DAFQELNKKSCALKKILSRIPDE 116 (210)
Q Consensus 45 ~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~--~~~~~e------~~f~el~~kA~~LK~iLSrIPde 116 (210)
..-|-|..+.+..| ++.|++ +|-+-|..|..++. +.+ .++..+ ....+...=|..||+-|..+|+-
T Consensus 14 ~~iP~~l~~~i~~l-~~~gl~---~eGIFR~sg~~~~v--~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~fLReLPep 87 (187)
T cd04403 14 STVPKFVRLCIEAV-EKRGLD---VDGIYRVSGNLAVI--QKLRFAVDHDEKLDLDDSKWEDIHVITGALKLFFRELPEP 87 (187)
T ss_pred CCCChHHHHHHHHH-HHhCCC---cCceeeecCcHHHH--HHHHHHhcCCCCCCccccccccHHHHHHHHHHHHhcCCCC
Confidence 35899999998665 555654 57888888884322 111 122211 23346667889999999999997
Q ss_pred ccchH---HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHH
Q psy4283 117 ITDRK---TFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALE 158 (210)
Q Consensus 117 i~dR~---~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le 158 (210)
+=... .|++.++. +.-.+-++++-.++..+| +.++..|.
T Consensus 88 Li~~~~~~~~~~~~~~--~~~~~~i~~l~~ll~~LP-~~n~~~L~ 129 (187)
T cd04403 88 LFPYSLFNDFVAAIKL--SDYEQRVSAVKDLIKSLP-KPNHDTLK 129 (187)
T ss_pred cCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCC-HHHHHHHH
Confidence 65543 56665543 112234455555666666 44544443
No 18
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=54.52 E-value=23 Score=29.73 Aligned_cols=108 Identities=14% Similarity=0.252 Sum_probs=60.1
Q ss_pred hcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCC-------ccchhcccCChHHHHHHHHhHHHHHHHhccCCccc
Q psy4283 45 TANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDV-------DAVEYKLNRSEDAFQELNKKSCALKKILSRIPDEI 117 (210)
Q Consensus 45 ~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~-------~~~e~~~~~~e~~f~el~~kA~~LK~iLSrIPdei 117 (210)
..-|=|..+.+. .++..|++ +|-+-|..|..+.. +...+.++-..+.+.+...-|..||+-|..+|+-+
T Consensus 16 ~~vP~iv~~~~~-~l~~~g~~---~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~llK~flr~Lp~pl 91 (196)
T cd04395 16 PYVPLIVEVCCN-IVEARGLE---TVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLLKSFFRKLPEPL 91 (196)
T ss_pred CCCChHHHHHHH-HHHHcCCC---CccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHHHHHHHhCCCcc
Confidence 446777777775 44666653 37778887752111 11111122222345567788999999999999988
Q ss_pred cchHHHHHHHHHHH-HHHHHHHHHHhhhhhcCCCCchhHHH
Q psy4283 118 TDRKTFLETIKEIA-SAIKKLLDAVNEVSGFIPGPSNKQAL 157 (210)
Q Consensus 118 ~dR~~FL~tIKeIA-saIK~lLdavN~v~~~~~~~~~k~~l 157 (210)
=....+-+.|+-.- +.-.+-++++-+++...| +.++..|
T Consensus 92 i~~~~~~~~i~~~~~~~~~~~i~~l~~~i~~LP-~~n~~~L 131 (196)
T cd04395 92 FTNELYPDFIEANRIEDPVERLKELRRLIHSLP-DHHYETL 131 (196)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-HHHHHHH
Confidence 77765555443100 111222344444455555 4555555
No 19
>PF03304 Mlp: Mlp lipoprotein family; InterPro: IPR004983 The Mlp (for Multicopy Lipoprotein) family of lipoproteins is found in Borrelia species []. This family were previously known as 2.9 lipoprotein genes []. These surface expressed genes may represent new candidate vaccinogens for Lyme disease []. Members of this family generally are downstream of four ORFs called A,B,C and D that are involved in hemolytic activity.
Probab=52.39 E-value=35 Score=28.95 Aligned_cols=94 Identities=22% Similarity=0.361 Sum_probs=58.3
Q ss_pred HHHHHHHHhHHHHHHHhccCCccccch----HH----HHHHHHHHHHHHHHHHHHHhhhhhcCCC--CchhHHHHHhhhh
Q psy4283 94 DAFQELNKKSCALKKILSRIPDEITDR----KT----FLETIKEIASAIKKLLDAVNEVSGFIPG--PSNKQALEQRKRE 163 (210)
Q Consensus 94 ~~f~el~~kA~~LK~iLSrIPdei~dR----~~----FL~tIKeIAsaIK~lLdavN~v~~~~~~--~~~k~~le~~Kre 163 (210)
+|=..++.=..+++.-+.+++++|+.+ +. |+.-|+.=-.-=|+|+.|-+.|+..+.. ...+.+++.-|-+
T Consensus 28 eEe~lfesL~~~f~~~iek~~~~~~~~~~~~K~k~~~ffdWLs~d~~kqKEl~~af~~vy~FLe~k~sk~k~~~~yIk~~ 107 (152)
T PF03304_consen 28 EEEKLFESLKTAFKYTIEKLSEEIQGCNDDNKSKYKNFFDWLSKDIQKQKELLNAFTEVYNFLEKKESKIKDFDEYIKGA 107 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhcCcHHHHHHHHhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344444445567777777777777543 35 8888872223344666666666665432 4445555555555
Q ss_pred h---------hhcchhhhHHHHHHhhcCCcchhh
Q psy4283 164 F---------VKFSKRFSNTLKDYFKEGQANSVY 188 (210)
Q Consensus 164 F---------V~ySKrFS~TLK~YFkd~~~~~Vf 188 (210)
+ -+|--.|++..++||+.+ +...|
T Consensus 108 id~~~~~~~~~k~~~~~~n~I~~~F~g~-~~d~f 140 (152)
T PF03304_consen 108 IDCCTGNDNANKYKNTFKNEIEQFFRGV-AIDIF 140 (152)
T ss_pred HHhccCccchhhcccchHHHHHHHHhcc-chhhc
Confidence 5 356667999999999887 34444
No 20
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.91 E-value=42 Score=28.49 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=26.1
Q ss_pred hhcccCChHHHHHHHHhHHHHHHHhccCCc
Q psy4283 86 EYKLNRSEDAFQELNKKSCALKKILSRIPD 115 (210)
Q Consensus 86 e~~~~~~e~~f~el~~kA~~LK~iLSrIPd 115 (210)
-|.+.++.++|.++......|..-|+.|..
T Consensus 6 ~~~~~~~d~eF~e~~eyi~~L~~~l~~~~k 35 (200)
T cd07624 6 MYLLKNRSPEFDKMNEYLTLFGEKLGTIER 35 (200)
T ss_pred hhhhcCCCccHHHHHHHHHHHHHHhHHHHH
Confidence 488999999999999999999988887753
No 21
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=48.23 E-value=1.3e+02 Score=26.96 Aligned_cols=100 Identities=19% Similarity=0.343 Sum_probs=67.9
Q ss_pred HHHHhHHHHHHHhccCCccccchH-HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhhhhhhh----------
Q psy4283 98 ELNKKSCALKKILSRIPDEITDRK-TFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVK---------- 166 (210)
Q Consensus 98 el~~kA~~LK~iLSrIPdei~dR~-~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~KreFV~---------- 166 (210)
+.++-...|..|=.+|=.+|..|. .|.+.++.|-+-=++|-+|+..+ .+.|+.|..-+.++++
T Consensus 36 ~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~------~~~R~~L~~~~~~~~~~~L~Il~~~r 109 (291)
T PF10475_consen 36 LQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVIC------KNLRRNLKSADENLTKSGLEILRLQR 109 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 346667778888888888998887 89999988877666666666655 2345555555555444
Q ss_pred ----------------cchhhhHHHHHHhhcCCcchhhhhHHHHHHHHHHHHHHHhh
Q psy4283 167 ----------------FSKRFSNTLKDYFKEGQANSVYVSALYLIHQTNMIMVTVKS 207 (210)
Q Consensus 167 ----------------ySKrFS~TLK~YFkd~~~~~Vf~SAn~Li~qTn~il~t~k~ 207 (210)
+...=-.+|++-..+|+ |..|-.||.++..++..++.
T Consensus 110 kr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~d----y~~Al~li~~~~~~l~~l~~ 162 (291)
T PF10475_consen 110 KRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGD----YPGALDLIEECQQLLEELKG 162 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHhccc
Confidence 22233334444444443 89999999999999877654
No 22
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=47.73 E-value=15 Score=31.35 Aligned_cols=104 Identities=20% Similarity=0.318 Sum_probs=64.0
Q ss_pred cCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchhc--ccC----ChHHHH--HHHHhHHHHHHHhccCCccc
Q psy4283 46 ANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYK--LNR----SEDAFQ--ELNKKSCALKKILSRIPDEI 117 (210)
Q Consensus 46 ~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~--~~~----~e~~f~--el~~kA~~LK~iLSrIPdei 117 (210)
.-|-+..+.+..| ++.|++ +|-+-|.+|+.++. +.++ ++. ....+. +...=|..||+-|..+|+-+
T Consensus 21 ~iP~~l~~~i~~l-~~~gl~---~EGIFR~~G~~~~i--~~l~~~ld~~~~~~~~~~~~~~~h~va~lLK~flReLPePL 94 (216)
T cd04391 21 KVPLIFQKLINKL-EERGLE---TEGILRIPGSAQRV--KFLCQELEAKFYEGTFLWDQVKQHDAASLLKLFIRELPQPL 94 (216)
T ss_pred CCCcHHHHHHHHH-HHcCCC---cCceeecCCcHHHH--HHHHHHHhcccccCccccccCCHHHHHHHHHHHHHhCCCcc
Confidence 5688888999876 445654 68999999985432 1121 110 111222 34557999999999999977
Q ss_pred cchH---HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHH
Q psy4283 118 TDRK---TFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALE 158 (210)
Q Consensus 118 ~dR~---~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le 158 (210)
=... .|.++.+ + ...++-++++..++...| +.++..|.
T Consensus 95 i~~~~~~~~~~~~~-~-~~~~~~~~~l~~li~~LP-~~n~~~L~ 135 (216)
T cd04391 95 LTVEYLPAFYSVQG-L-PSKKDQLQALNLLVLLLP-EANRDTLK 135 (216)
T ss_pred CCHHHHHHHHHHHc-C-CCHHHHHHHHHHHHHHCC-HHHHHHHH
Confidence 5554 3443211 1 124556788888877777 56666553
No 23
>PF08103 Antimicrobial_8: Uperin family; InterPro: IPR012527 This family consists of the uperin family of antimicrobial peptides. Uperin is a wide-spectrum antibiotic peptide isolated from the Australian toadlet, Uperoleia mjobergii. Being only 17 amino acid residues long, it is smaller than most other wide-spectrum antibiotic peptides isolated from amphibians. Uperin adopts a well-defined amphipathic alpha-helix with distinct hydrophilic and hydrophobic faces [].; GO: 0005576 extracellular region
Probab=47.61 E-value=18 Score=20.42 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH
Q psy4283 124 LETIKEIASAIKKL 137 (210)
Q Consensus 124 L~tIKeIAsaIK~l 137 (210)
+..|+.|+++||.+
T Consensus 3 gd~~rKivs~iKNv 16 (17)
T PF08103_consen 3 GDAIRKIVSVIKNV 16 (17)
T ss_pred HHHHHHHHHHHHhc
Confidence 56789999999864
No 24
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=47.00 E-value=31 Score=29.25 Aligned_cols=103 Identities=18% Similarity=0.297 Sum_probs=60.2
Q ss_pred CCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchh--cccCC--hHHH--HHHHHhHHHHHHHhccCCccccch
Q psy4283 47 NPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEY--KLNRS--EDAF--QELNKKSCALKKILSRIPDEITDR 120 (210)
Q Consensus 47 ~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~--~~~~~--e~~f--~el~~kA~~LK~iLSrIPdei~dR 120 (210)
-|-|..+.+.-| ++.|+. .|-+-|..|+.++. +++ .+++. -+.+ .+...=|..||+-|..+|+-+=..
T Consensus 17 IP~~l~~ci~~i-e~~gl~---~EGIFRv~G~~~~i--~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~ 90 (193)
T cd04382 17 IPALIVHCVNEI-EARGLT---EEGLYRVSGSEREV--KALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITF 90 (193)
T ss_pred ccHHHHHHHHHH-HHcCCC---CCCeeecCCcHHHH--HHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCH
Confidence 466677777665 455554 67888888874332 111 12111 1111 166778999999999999966554
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHH
Q psy4283 121 K---TFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALE 158 (210)
Q Consensus 121 ~---~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le 158 (210)
. .|++..+.. .-.+.++++-.++..+| +.++..|.
T Consensus 91 ~~y~~~~~~~~~~--~~~~~~~~l~~ll~~LP-~~n~~~L~ 128 (193)
T cd04382 91 ALWKEFMEAAEIL--DEDNSRAALYQAISELP-QPNRDTLA 128 (193)
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHHHCC-HHHHHHHH
Confidence 3 566665432 12344455555666666 55655554
No 25
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=46.78 E-value=35 Score=28.62 Aligned_cols=104 Identities=23% Similarity=0.369 Sum_probs=61.9
Q ss_pred cCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchh--cccC-------ChHHHHHHHHhHHHHHHHhccCCcc
Q psy4283 46 ANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEY--KLNR-------SEDAFQELNKKSCALKKILSRIPDE 116 (210)
Q Consensus 46 ~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~--~~~~-------~e~~f~el~~kA~~LK~iLSrIPde 116 (210)
.-|-+..+.+..|- +.|+. +|-+.|.+|+.++. +++ .+++ ....+.+...=|..||.-|..+|+-
T Consensus 15 ~iP~iv~~ci~~l~-~~gl~---~EGIFR~sG~~~~i--~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~flReLP~p 88 (194)
T cd04372 15 QRPMVVDMCIREIE-ARGLQ---SEGLYRVSGFAEEI--EDVKMAFDRDGEKADISATVYPDINVITGALKLYFRDLPIP 88 (194)
T ss_pred CCChHHHHHHHHHH-HcCCC---cCceeecCCcHHHH--HHHHHHHcCCCCccCCcccccccHHHHHHHHHHHHHhCCCc
Confidence 57888888887764 45654 48899999984322 111 1111 1123446777899999999999997
Q ss_pred ccch---HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHH
Q psy4283 117 ITDR---KTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALE 158 (210)
Q Consensus 117 i~dR---~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le 158 (210)
+=.- ..|++..+. +.-.+-+.++-.++..+| +.++..|.
T Consensus 89 Li~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~LP-~~n~~~L~ 130 (194)
T cd04372 89 VITYDTYPKFIDAAKI--SNPDERLEAVHEALMLLP-PAHYETLR 130 (194)
T ss_pred cCCHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHCC-HHHHHHHH
Confidence 6443 356665432 111233444444555566 45555553
No 26
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=45.94 E-value=67 Score=26.57 Aligned_cols=107 Identities=23% Similarity=0.347 Sum_probs=60.2
Q ss_pred hcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCc---------cchhcccCChHHHHHHHHhHHHHHHHhccCCc
Q psy4283 45 TANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVD---------AVEYKLNRSEDAFQELNKKSCALKKILSRIPD 115 (210)
Q Consensus 45 ~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~---------~~e~~~~~~e~~f~el~~kA~~LK~iLSrIPd 115 (210)
..-|-+..+.+..|- +.|++ .|-+-|..|...... ...|...+.+....+...=|..||+-|..+|+
T Consensus 14 ~~iP~~v~~~i~~l~-~~gl~---~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~LK~fLreLp~ 89 (192)
T cd04398 14 DNVPNIVYQCIQAIE-NFGLN---LEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLLKLFFRELPE 89 (192)
T ss_pred CCCCHHHHHHHHHHH-HhCCC---CCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHHHHHHHhCCC
Confidence 457888888886544 45554 567788887732210 00111111111224667789999999999999
Q ss_pred cccchH---HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHH
Q psy4283 116 EITDRK---TFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALE 158 (210)
Q Consensus 116 ei~dR~---~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le 158 (210)
-+=.-. .|++..+. +.-.+-++++..+++.+| +.++..|.
T Consensus 90 pLi~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~LP-~~n~~~L~ 132 (192)
T cd04398 90 PLLTKALSREFIEAAKI--EDESRRRDALHGLINDLP-DANYATLR 132 (192)
T ss_pred ccCCHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHCC-HHHHHHHH
Confidence 776654 34443321 011234455566666666 45555554
No 27
>PF14412 AHH: A nuclease family of the HNH/ENDO VII superfamily with conserved AHH
Probab=45.43 E-value=75 Score=23.95 Aligned_cols=73 Identities=11% Similarity=0.174 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCCcccchhHHHhhccCCCCccchhcccC-ChH--HHHHHHHhHHHHHHHhccCCccccchHHHHHHHHHH
Q psy4283 54 FVVGIMRQGELSVNMNESILRLQGAASDVDAVEYKLNR-SED--AFQELNKKSCALKKILSRIPDEITDRKTFLETIKEI 130 (210)
Q Consensus 54 fV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~~~~-~e~--~f~el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeI 130 (210)
....++++.|+++|-.+...-|-.+-. .+-..++ ..+ ..+.+..+-..+.. ....+|..|++.+++|
T Consensus 32 ~~~~~l~~~g~~in~~~Ngv~Lp~~~~----~~~~~H~g~H~~~Y~~~V~~~L~~~~~------~~~~~~~~~~~~l~~i 101 (109)
T PF14412_consen 32 KLRKILEKYGIDINDPENGVWLPNSEK----PGRPPHRGRHPNEYNKYVRERLDKIEN------SKKENREEFRKELQKI 101 (109)
T ss_pred HHHHHHHHcCCCcCCccceeeeeccCC----CCcCCcCCCCcHHHHHHHHHHHHHHHH------HhhcCHHHHHHHHHHH
Confidence 446899999999999999888875421 1122222 111 23445444333333 5677899999999999
Q ss_pred HHHHHH
Q psy4283 131 ASAIKK 136 (210)
Q Consensus 131 AsaIK~ 136 (210)
...|+.
T Consensus 102 ~~~l~~ 107 (109)
T PF14412_consen 102 KNELRN 107 (109)
T ss_pred HHHHHc
Confidence 988763
No 28
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=44.36 E-value=38 Score=28.28 Aligned_cols=107 Identities=18% Similarity=0.293 Sum_probs=63.2
Q ss_pred hcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchh--cccCC-------hHHHHHHHHhHHHHHHHhccCCc
Q psy4283 45 TANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEY--KLNRS-------EDAFQELNKKSCALKKILSRIPD 115 (210)
Q Consensus 45 ~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~--~~~~~-------e~~f~el~~kA~~LK~iLSrIPd 115 (210)
..-|=+..+++..|-++.++. +|-+.|..|+.+.. +.+ .++.. +++..+...=|..||.-|..+|+
T Consensus 20 ~~iP~iv~~~i~~l~~~g~~~---~eGIFR~~G~~~~i--~~l~~~~~~~~~~~~~~~~~~~d~h~va~lLK~flreLP~ 94 (190)
T cd04400 20 RDLPSVVYRCIEYLDKNRAIY---EEGIFRLSGSASVI--KQLKERFNTEYDVDLFSSSLYPDVHTVAGLLKLYLRELPT 94 (190)
T ss_pred CCCChHHHHHHHHHHHcCCcC---CCCeeeCCCcHHHH--HHHHHHHcCCCCCCccccccccCHHHHHHHHHHHHHhCCc
Confidence 457888888887776654332 57788888874321 110 01111 11234567789999999999999
Q ss_pred cccchHHHHHHHHHHHH---HHHHHHHHHhhhhhcCCCCchhHHHH
Q psy4283 116 EITDRKTFLETIKEIAS---AIKKLLDAVNEVSGFIPGPSNKQALE 158 (210)
Q Consensus 116 ei~dR~~FL~tIKeIAs---aIK~lLdavN~v~~~~~~~~~k~~le 158 (210)
-+=....+-. +.++++ ...+...++-.+++.+| +.++..|.
T Consensus 95 PLi~~~~~~~-~~~~~~~~~~~~~~~~~l~~li~~LP-~~n~~~L~ 138 (190)
T cd04400 95 LILGGELHND-FKRLVEENHDRSQRALELKDLVSQLP-QANYDLLY 138 (190)
T ss_pred ccCCHHHHHH-HHHHHhccCCHHHHHHHHHHHHHHCC-HHHHHHHH
Confidence 8777655432 233333 23455556666666666 45555544
No 29
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=43.59 E-value=32 Score=29.14 Aligned_cols=107 Identities=20% Similarity=0.351 Sum_probs=60.1
Q ss_pred HhcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchhcccCCh------H-HHHHHHHhHHHHHHHhccCCcc
Q psy4283 44 ETANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYKLNRSE------D-AFQELNKKSCALKKILSRIPDE 116 (210)
Q Consensus 44 E~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~~~~~e------~-~f~el~~kA~~LK~iLSrIPde 116 (210)
...-|=|....+.-| ++.|+ .|-+.|++|+.+....---.+++.. . ...+...=|..||.-|..+|+-
T Consensus 15 g~~iP~il~~~i~~l-~~~g~----~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~flReLPeP 89 (195)
T cd04384 15 GQDVPQVLKSCTEFI-EKHGI----VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLCKLYFRELPNP 89 (195)
T ss_pred CCCCChHHHHHHHHH-HHcCC----CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHHHHHHHhCCCc
Confidence 356788888888766 44443 3788888887422100001111111 1 2246777899999999999985
Q ss_pred ccch---HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHH
Q psy4283 117 ITDR---KTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALE 158 (210)
Q Consensus 117 i~dR---~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le 158 (210)
+=.- ..|.++++. ..-.+-++++-.++..+| +.++..|.
T Consensus 90 Li~~~~y~~~~~~~~~--~~~~~~~~~l~~li~~LP-~~n~~~L~ 131 (195)
T cd04384 90 LLTYQLYEKFSEAVSA--ASDEERLEKIHDVIQQLP-PPHYRTLE 131 (195)
T ss_pred cCCHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHCC-HHHHHHHH
Confidence 5433 356666543 122233444445555555 44555543
No 30
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.31 E-value=66 Score=28.00 Aligned_cols=112 Identities=16% Similarity=0.175 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchhcccCChHHHHHHHHhHHHHHHHhc
Q psy4283 32 ASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYKLNRSEDAFQELNKKSCALKKILS 111 (210)
Q Consensus 32 A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~~~~~e~~f~el~~kA~~LK~iLS 111 (210)
.+..|++-+.|.-+.|-+.++-.- +=..-+..+.++|....|.
T Consensus 9 ~~~~l~~~~~Kl~K~~~~~~~a~~----~~~~a~~~Fa~~L~~f~~~--------------------------------- 51 (202)
T cd07606 9 SADELRDRSLKLYKGCRKYRDALG----EAYDGDSAFAESLEEFGGG--------------------------------- 51 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCC---------------------------------
Confidence 667778777777777666443222 2112235556666666543
Q ss_pred cCCcccc------chHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC---CchhHHHHHhhhhhhhcchhhhHHHHHHhhc
Q psy4283 112 RIPDEIT------DRKTFLETIKEIASAIKKLLDAVNEVSGFIPG---PSNKQALEQRKREFVKFSKRFSNTLKDYFKE 181 (210)
Q Consensus 112 rIPdei~------dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~---~~~k~~le~~KreFV~ySKrFS~TLK~YFkd 181 (210)
-.|+|. .-..|..+++||.+.=..|++-++.++..--. -..=+.+-..||.|-|.|..+-..|-.|=+=
T Consensus 52 -~dD~~~~a~gg~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l 129 (202)
T cd07606 52 -HDDPISVAVGGPVMTKFTSALREIGSYKEVLRSQVEHMLNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKFLSL 129 (202)
T ss_pred -CCChHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 123333 35679999999999999999999887653111 1222345678899999999998888877653
No 31
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=42.31 E-value=59 Score=24.49 Aligned_cols=65 Identities=12% Similarity=0.216 Sum_probs=50.3
Q ss_pred chhcccCChHHHHHHHHhHHHHHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy4283 85 VEYKLNRSEDAFQELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIP 149 (210)
Q Consensus 85 ~e~~~~~~e~~f~el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~ 149 (210)
..|.+++........+.....+...|..+=.-+.|.+.-.+.|..|...|......+..++....
T Consensus 30 RgYlltgd~~~l~~y~~~~~~~~~~l~~L~~l~~~~p~q~~~l~~l~~~~~~~~~~~~~~i~~~~ 94 (138)
T PF05227_consen 30 RGYLLTGDPEFLEPYQEARARLEKALAQLRQLVQDNPEQQERLDQLEELIDQWRELLEPQIALRK 94 (138)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHH-G
T ss_pred hHHHHcCCHhhhchHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888887776678888888888888888877778888899999999999888888888877655
No 32
>PHA02693 hypothetical protein; Provisional
Probab=41.94 E-value=50 Score=34.10 Aligned_cols=69 Identities=13% Similarity=0.266 Sum_probs=56.6
Q ss_pred hhHHHhhccCCCCccchhcccCChHHHHHHHHhHHHHH--------HHhccCCccccchHHHHHHHHHHHHHHH------
Q psy4283 70 ESILRLQGAASDVDAVEYKLNRSEDAFQELNKKSCALK--------KILSRIPDEITDRKTFLETIKEIASAIK------ 135 (210)
Q Consensus 70 EslLr~a~~~~~~~~~e~~~~~~e~~f~el~~kA~~LK--------~iLSrIPdei~dR~~FL~tIKeIAsaIK------ 135 (210)
+.+|.|++. +.++-.+...++|+.-.++++ .|+-=||+-|---+.|.|.|+||+.+-=
T Consensus 176 dtll~lsD~--------~nIpP~n~aL~~L~D~~~~ieLVkkyP~~nIi~yls~~ik~~~~Fi~~v~e~v~~~~v~P~~~ 247 (710)
T PHA02693 176 EDLVALADK--------GNIPPLNRALREVDDVATCARLVCEWPYFNIMKFLSPNMVASREFAQAVREGAMALCVRPVGA 247 (710)
T ss_pred HHHHHHhhh--------cCCCchhHHHHHHHhHHHHHHHHHhCcchhhHhhccHHhhhcHHHHHHHHHHHHHHccCCchh
Confidence 588888877 666666778888888777775 4778889999999999999999999986
Q ss_pred HHHHHHhhhhh
Q psy4283 136 KLLDAVNEVSG 146 (210)
Q Consensus 136 ~lLdavN~v~~ 146 (210)
.+|.+||...-
T Consensus 248 ~~l~~vnk~~~ 258 (710)
T PHA02693 248 DRMVGISKSRS 258 (710)
T ss_pred hhhhhcchhhh
Confidence 77888888743
No 33
>PF11308 GHL1-3: Glycosyl hydrolases related to GH101 family, GHL1-GHL3; InterPro: IPR021459 Some members in this family of proteins with unknown function are annotated as lipoproteins however this cannot be confirmed. Currently no function is known.
Probab=41.71 E-value=10 Score=35.03 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhhhhcCCCCchhHHHHHhhhhhhhcchhhhHHHHHHhhcCCcchhhhhHHHHHHHH
Q psy4283 133 AIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFSKRFSNTLKDYFKEGQANSVYVSALYLIHQT 198 (210)
Q Consensus 133 aIK~lLdavN~v~~~~~~~~~k~~le~~KreFV~ySKrFS~TLK~YFkd~~~~~Vf~SAn~Li~qT 198 (210)
..++|...++.+...+.- .+..++.++.+++++.+.||.-.|.=....=...-|+|++++|+||
T Consensus 243 ~~~~L~~~Lyn~pP~~~l--~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~m~~f~~l~~d~~vQ~t 306 (307)
T PF11308_consen 243 EDRMLRALLYNTPPLYHL--DRAEWEKRKEEIARYQRVFSPLHEKVATQEMTDFRWLSEDGLVQRT 306 (307)
T ss_pred HHHHHHHHHcCCCceeec--CHHhhhccHHHHHHHHHHHhHHHHHHHHHHhhCceeecCCCceecc
Confidence 346777778887665542 2567888999999999999999999988888888899999999987
No 34
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=41.60 E-value=54 Score=27.32 Aligned_cols=109 Identities=17% Similarity=0.341 Sum_probs=64.2
Q ss_pred HhcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchhcccCChH-HH---HHHHHhHHHHHHHhccCCccccc
Q psy4283 44 ETANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYKLNRSED-AF---QELNKKSCALKKILSRIPDEITD 119 (210)
Q Consensus 44 E~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~~~~~e~-~f---~el~~kA~~LK~iLSrIPdei~d 119 (210)
+..-|-+..+++..|-+ .|++ +|-+.|..|+.++.+.=-=.+++.+. .+ .+...-|..||+-|..+|+-+=.
T Consensus 17 ~~~vP~il~~~i~~l~~-~gl~---~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~lK~flr~Lp~pLi~ 92 (189)
T cd04393 17 ENGVPAVVRHIVEYLEQ-HGLE---QEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLLRLFLQELPEGLIP 92 (189)
T ss_pred CCCCChHHHHHHHHHHH-cCCC---CCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHHHHHHHhCCCccCC
Confidence 44689999999977655 5553 57888888883221000001222111 12 24667889999999999997644
Q ss_pred hH---HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHH
Q psy4283 120 RK---TFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALE 158 (210)
Q Consensus 120 R~---~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le 158 (210)
-. .|++..++... -.+.+.++-.+++.+| +.++..|.
T Consensus 93 ~~~~~~l~~~~~~~~~-~~~~~~~l~~li~~Lp-~~n~~~L~ 132 (189)
T cd04393 93 ASLQIRLMQLYQDYNG-EDEFGRKLRDLLQQLP-PVNYSLLK 132 (189)
T ss_pred HHHHHHHHHHHHHccC-hHHHHHHHHHHHHHCC-HHHHHHHH
Confidence 44 56666555421 1334455556666666 55666654
No 35
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=40.22 E-value=28 Score=28.62 Aligned_cols=39 Identities=33% Similarity=0.611 Sum_probs=11.6
Q ss_pred HHHHHHHHH------HHHHHHHhh--hhhcCCCCchhHHHHHhhhhhhhcc
Q psy4283 126 TIKEIASAI------KKLLDAVNE--VSGFIPGPSNKQALEQRKREFVKFS 168 (210)
Q Consensus 126 tIKeIAsaI------K~lLdavN~--v~~~~~~~~~k~~le~~KreFV~yS 168 (210)
.||||..-| |+|||++.. --+.++++.. . .-++-|.|||
T Consensus 46 IIkDisdkIdkCeC~Kelle~Lk~q~d~~iip~~~~-~---~~~~~~~kYS 92 (121)
T PF03310_consen 46 IIKDISDKIDKCECNKELLEALKKQPDKQIIPSPEE-D---SKGSSLQKYS 92 (121)
T ss_dssp HHHHHHHHHHT-TTHHHHHHHHT----------------------------
T ss_pred HHHHHHHHHHhchhhHHHHHHHhcCCCCCcCCCCCC-C---CCCCCCcccC
Confidence 356666655 678888877 3222332211 1 5567888887
No 36
>PF11827 DUF3347: Protein of unknown function (DUF3347); InterPro: IPR021782 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 169 to 570 amino acids in length.
Probab=40.21 E-value=1.1e+02 Score=25.76 Aligned_cols=94 Identities=20% Similarity=0.279 Sum_probs=61.0
Q ss_pred HhcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchhcccCChHHHHHHHHhHHHHHHHhccCCccccchHHH
Q psy4283 44 ETANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYKLNRSEDAFQELNKKSCALKKILSRIPDEITDRKTF 123 (210)
Q Consensus 44 E~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~~~~~e~~f~el~~kA~~LK~iLSrIPdei~dR~~F 123 (210)
....|.+..+-+..|+. ++|-+... =.. +...+....|..|...|..++..
T Consensus 35 ~~~~~~~~~~~l~~v~~----------~Yl~lk~A----Lv~--------dd~~~a~~aA~~l~~~l~~~~~~------- 85 (174)
T PF11827_consen 35 TPAAPEAADDSLQQVLN----------AYLALKDA----LVA--------DDLKAAKAAAKALLAALKAVDMA------- 85 (174)
T ss_pred ccccchhhHHHHHHHHH----------HHHHHHHH----HHh--------cCHHHHHHHHHHHHHHHHhcccc-------
Confidence 34456666777777776 67776544 111 14556788899999999999876
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhhhhhhhcchhhhHHHHHH
Q psy4283 124 LETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFSKRFSNTLKDY 178 (210)
Q Consensus 124 L~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~KreFV~ySKrFS~TLK~Y 178 (210)
+...+.+..|.+..+..-.. -++.||..|...|+.+-+-+|.+
T Consensus 86 -~~~~~~~~~~~~~~~~~~~~-----------di~~qR~~F~~lS~~~~~l~~~~ 128 (174)
T PF11827_consen 86 -ELSASLAKALMEAAEDAKEH-----------DIEHQREAFESLSEAMIDLVKAF 128 (174)
T ss_pred -cccHHHHHHHHHHHHhhhhC-----------CHHHHHHHHHHHHHHHHHHHHhc
Confidence 22223333333333222111 68899999999999998888888
No 37
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=39.91 E-value=92 Score=24.03 Aligned_cols=45 Identities=29% Similarity=0.508 Sum_probs=35.1
Q ss_pred HHHHHHHhHHHHHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhh
Q psy4283 95 AFQELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNE 143 (210)
Q Consensus 95 ~f~el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~ 143 (210)
.+|++.+=-..|++++.-.|+.-.|+...-+++ ..|+++...+|+
T Consensus 136 Piqrl~rY~lll~~llk~t~~~~~d~~~L~~a~----~~i~~l~~~in~ 180 (180)
T PF00621_consen 136 PIQRLPRYPLLLKRLLKNTPPDHPDYKSLQKAL----DQIKELIQHINE 180 (180)
T ss_dssp HHHHHHHHHHHHHHHHHTSSTTSTHHHHHHHHH----HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHcCCCCChhHHHHHHHH----HHHHHHHHHhCc
Confidence 568888888999999999998888886555554 457777777775
No 38
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=39.90 E-value=42 Score=25.78 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q psy4283 31 QASQTLRAALSRTETANPGFAYDFVVGIMR 60 (210)
Q Consensus 31 ~A~qtLRaAf~kAE~~~PGft~dfV~~IL~ 60 (210)
+.-+..|.-+...|..+||+-+.|+.++..
T Consensus 37 a~R~~~k~~L~~LE~~~P~~k~~i~~s~~~ 66 (104)
T TIGR00269 37 SVRARIRDFLYDLENKKPGVKFSVLRGFEK 66 (104)
T ss_pred CchHHHHHHHHHHHHHCcChHHHHHHHHHH
Confidence 456778889999999999999999998865
No 39
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=39.42 E-value=1.5e+02 Score=21.70 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=46.0
Q ss_pred hHhHHHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCC--cccchhHHHhhcc
Q psy4283 17 LFRPILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELS--VNMNESILRLQGA 78 (210)
Q Consensus 17 li~Pvl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~--vn~~EslLr~a~~ 78 (210)
.+.-+|.+.-.-++.....|+++|.+.....|+ .++|+..+....+.+ ..+-+.+.++|-.
T Consensus 23 ~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~l~~L~~vA~A 85 (104)
T cd07313 23 AIDRLLAERFGLDAEEAAELLAEAEALEEEAPD-LYEFTSLIKEHFDYEERLELVEALWEVAYA 85 (104)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 344556665455667889999999999988888 778998888766332 7777888888877
No 40
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=38.65 E-value=54 Score=26.61 Aligned_cols=90 Identities=20% Similarity=0.251 Sum_probs=54.9
Q ss_pred CCc-hHHHHHHHHHhcCCCccc-chhHHHhhccCCCCccchhcccCChHHHHHHHHhHHHHHHHhcc----CCcccc-ch
Q psy4283 48 PGF-AYDFVVGIMRQGELSVNM-NESILRLQGAASDVDAVEYKLNRSEDAFQELNKKSCALKKILSR----IPDEIT-DR 120 (210)
Q Consensus 48 PGf-t~dfV~~IL~r~~~~vn~-~EslLr~a~~~~~~~~~e~~~~~~e~~f~el~~kA~~LK~iLSr----IPdei~-dR 120 (210)
||= .+.++..+|++.|++++= .=.-+.-... +.-||.++..+....++....-.-...+.. |||=.. +-
T Consensus 42 ~g~~~~~~a~~vl~e~Gid~~~~~~k~i~~~~~----~~~DlIitmd~~~~~~~~~~~p~~~~~~~~~~~~v~DP~~~~~ 117 (139)
T COG0394 42 PGEPPDPRAVEVLAEHGIDISGHRSKQLTEEDF----DEFDLIITMDESNAADLCPLAPGNTLLLEYEHWEVPDPYYGSG 117 (139)
T ss_pred CCCCCCHHHHHHHHHcCCCcCCccCccCchhhh----hhCCEEEEeChHHHhhHhhcCccccccccccCCCCCCCCCCch
Confidence 443 788899999988887662 1111111111 223788888777666665543220022333 455432 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4283 121 KTFLETIKEIASAIKKLLDAV 141 (210)
Q Consensus 121 ~~FL~tIKeIAsaIK~lLdav 141 (210)
..|.++.++|=.+|+.+++.+
T Consensus 118 e~~~~~~~~i~~~~~~l~~~l 138 (139)
T COG0394 118 EEFEEVYRLIEDAIKALLKRL 138 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999875
No 41
>PF14355 Abi_C: Abortive infection C-terminus
Probab=38.10 E-value=75 Score=23.04 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=29.2
Q ss_pred HHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy4283 106 LKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIP 149 (210)
Q Consensus 106 LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~ 149 (210)
.+..|---|+...+ +.||+|.+++..+++++|++ .+-.
T Consensus 8 ~~~~L~~~~~~~~~-----~~ik~il~~l~~i~~~i~~l-RN~~ 45 (80)
T PF14355_consen 8 VKKALGLSPDSQSD-----KDIKKILSSLNSIVSGINEL-RNKY 45 (80)
T ss_pred HHHHHccCCcccch-----HHHHHHHHHHHHHHHHHHHH-HCCC
Confidence 34455555666666 89999999999999999999 5543
No 42
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=37.79 E-value=61 Score=27.21 Aligned_cols=107 Identities=17% Similarity=0.263 Sum_probs=60.5
Q ss_pred HhcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchhcccCChH------HHHHHHHhHHHHHHHhccCCccc
Q psy4283 44 ETANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYKLNRSED------AFQELNKKSCALKKILSRIPDEI 117 (210)
Q Consensus 44 E~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~~~~~e~------~f~el~~kA~~LK~iLSrIPdei 117 (210)
...-|-+..+.+.-| ++.|++ +|-+-|..|+.++...=.-.+++.++ ...+...=|..||+-|..+|+-+
T Consensus 15 ~~~IP~~v~~~i~~l-~~~gl~---~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK~fLReLPepL 90 (188)
T cd04383 15 GQAIPLVVESCIRFI-NLYGLQ---HQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLKLYFRGLENPL 90 (188)
T ss_pred CCCCChHHHHHHHHH-HHcCCC---CCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHHHHHHhCCCcc
Confidence 356899999999765 455653 68999999985322110111222221 23455667999999999999966
Q ss_pred cchH---HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHH
Q psy4283 118 TDRK---TFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQAL 157 (210)
Q Consensus 118 ~dR~---~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~l 157 (210)
=... .|++..+. ....+-+.++-+++..+| +.++..|
T Consensus 91 ip~~~~~~~~~~~~~--~~~~~~~~~l~~ll~~LP-~~n~~~L 130 (188)
T cd04383 91 FPKERFEDLMSCVKL--ENPTERVHQIREILSTLP-RSVIIVM 130 (188)
T ss_pred CCHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHCC-HHHHHHH
Confidence 5444 34444321 111223334444445555 4454444
No 43
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=35.51 E-value=40 Score=28.09 Aligned_cols=105 Identities=21% Similarity=0.277 Sum_probs=59.5
Q ss_pred hcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchh--cccCCh-HHHH---HHHHhHHHHHHHhccCCcccc
Q psy4283 45 TANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEY--KLNRSE-DAFQ---ELNKKSCALKKILSRIPDEIT 118 (210)
Q Consensus 45 ~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~--~~~~~e-~~f~---el~~kA~~LK~iLSrIPdei~ 118 (210)
..-|.+..+++..|-+ .|++ +|-+.|.+|+.+.. +++ .+++.+ ..|. +...-|..||+-|..+|+-+=
T Consensus 21 ~~iP~il~~~i~~l~~-~g~~---~eGIFR~~g~~~~i--~~l~~~~~~~~~~~~~~~~d~~~va~~LK~~lr~Lp~pLi 94 (195)
T cd04404 21 EPIPPVVRETVEYLQA-HALT---TEGIFRRSANTQVV--KEVQQKYNMGEPVDFDQYEDVHLPAVILKTFLRELPEPLL 94 (195)
T ss_pred CCCChHHHHHHHHHHH-cCCC---CCCeeeCCCcHHHH--HHHHHHHhCCCCCCcccccCHHHHHHHHHHHHHhCCCccC
Confidence 5689999999977765 4443 45678888874322 111 122221 1332 556678899999999999887
Q ss_pred chHHHHHHHHHHHHH-HHHHHHHHhhhhhcCCCCchhHHH
Q psy4283 119 DRKTFLETIKEIASA-IKKLLDAVNEVSGFIPGPSNKQAL 157 (210)
Q Consensus 119 dR~~FL~tIKeIAsa-IK~lLdavN~v~~~~~~~~~k~~l 157 (210)
....|- .+.++... -.+..+++-.+++..| +.++..|
T Consensus 95 ~~~~~~-~l~~~~~~~~~~~~~~~~~~i~~LP-~~n~~~L 132 (195)
T cd04404 95 TFDLYD-DIVGFLNVDKEERVERVKQLLQTLP-EENYQVL 132 (195)
T ss_pred CHHHHH-HHHHHHcCCHHHHHHHHHHHHHHCC-HHHHHHH
Confidence 665332 22222110 1123344555555555 4455555
No 44
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=34.95 E-value=56 Score=26.06 Aligned_cols=106 Identities=21% Similarity=0.330 Sum_probs=54.1
Q ss_pred CCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchhcccCCh-----HHHHHHHHhHHHHHHHhccCCccccchH
Q psy4283 47 NPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYKLNRSE-----DAFQELNKKSCALKKILSRIPDEITDRK 121 (210)
Q Consensus 47 ~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~~~~~e-----~~f~el~~kA~~LK~iLSrIPdei~dR~ 121 (210)
-|-+.++++..|-+ .|++ +|-+-|..|+......---.+++.+ ....+...-|..||+.|..+|+-+=.-.
T Consensus 3 vP~~l~~~~~~l~~-~g~~---~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~ 78 (174)
T smart00324 3 IPIIVEKCIEYLEK-RGLD---TEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYE 78 (174)
T ss_pred CChHHHHHHHHHHH-cCCC---ccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHH
Confidence 46777777766666 4444 2556677766321100000122211 1223556678999999999999775544
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHH
Q psy4283 122 ---TFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQ 159 (210)
Q Consensus 122 ---~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~ 159 (210)
.|++..+. ....+-+.++-.++...| +.++..|..
T Consensus 79 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~Lp-~~~~~~L~~ 116 (174)
T smart00324 79 LYEEFIEAAKV--EDETERLRALRELISLLP-PANRATLRY 116 (174)
T ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHHHCC-HHHHHHHHH
Confidence 34433331 111222333444444444 445555543
No 45
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=34.86 E-value=76 Score=28.02 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=45.7
Q ss_pred cCCccccchHHHH-HHHHHHHHHHHHHHHHH-------hhhhhc-CCC--CchhHHHHHhhhhhhhcchhhhHHHHHHhh
Q psy4283 112 RIPDEITDRKTFL-ETIKEIASAIKKLLDAV-------NEVSGF-IPG--PSNKQALEQRKREFVKFSKRFSNTLKDYFK 180 (210)
Q Consensus 112 rIPdei~dR~~FL-~tIKeIAsaIK~lLdav-------N~v~~~-~~~--~~~k~~le~~KreFV~ySKrFS~TLK~YFk 180 (210)
-|+|...|=-.|+ +++++.++.|.+|.|.- +..+.. +.. -..-+.+-..||.|-|.|-.+-..|-.|-.
T Consensus 53 ~~gd~~~dde~~i~~sl~ef~~~~~el~d~r~~L~~~~~~~l~~pL~~F~kedl~~~Ke~KK~FdK~se~~~~Al~K~~~ 132 (207)
T cd07635 53 FIGDAETDDERCIDASLQEFSNFLKNLEEQREIMALNVTETLIKPLERFRKEQLGAVKEEKKKFDKETEKNYSLLEKHLN 132 (207)
T ss_pred cCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 4567766656677 77777777777777765 332221 100 122245667789999999999999988874
Q ss_pred c
Q psy4283 181 E 181 (210)
Q Consensus 181 d 181 (210)
=
T Consensus 133 l 133 (207)
T cd07635 133 L 133 (207)
T ss_pred c
Confidence 4
No 46
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=34.51 E-value=35 Score=24.89 Aligned_cols=18 Identities=50% Similarity=0.709 Sum_probs=14.8
Q ss_pred HHHHHHHHHHH------HHHHHHH
Q psy4283 122 TFLETIKEIAS------AIKKLLD 139 (210)
Q Consensus 122 ~FL~tIKeIAs------aIK~lLd 139 (210)
.+.+|.||+|- -||+|||
T Consensus 38 G~~~tLKe~aYilLCCWCIKelLD 61 (61)
T PF15221_consen 38 GLQQTLKEVAYILLCCWCIKELLD 61 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 68899999985 4788887
No 47
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=33.83 E-value=50 Score=27.81 Aligned_cols=104 Identities=17% Similarity=0.297 Sum_probs=60.3
Q ss_pred hcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchh--cccCCh------HHHHHHHHhHHHHHHHhccCCcc
Q psy4283 45 TANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEY--KLNRSE------DAFQELNKKSCALKKILSRIPDE 116 (210)
Q Consensus 45 ~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~--~~~~~e------~~f~el~~kA~~LK~iLSrIPde 116 (210)
..-|.+..+.+..|-+ .|++ .|-+-|..|..+.. +.+ .++... ....+...-|..||.-|..+|+-
T Consensus 18 ~~iP~~v~~~i~~L~~-~gl~---~eGIFR~~g~~~~i--~~l~~~~d~g~~~~~~~~~~~d~h~va~~lK~fLreLp~p 91 (203)
T cd04386 18 REIALPIEACVMCLLE-TGMN---EEGLFRVGGGASKL--KRLKAALDAGTFSLPLDEFYSDPHAVASALKSYLRELPDP 91 (203)
T ss_pred CCCCHHHHHHHHHHHH-cCCC---CCCeeeCCCcHHHH--HHHHHHHhCCCCCcchhhccCCHHHHHHHHHHHHHhCCCc
Confidence 4578888888876655 4554 37888888874332 111 111111 12245677899999999999997
Q ss_pred ccchH---HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHH
Q psy4283 117 ITDRK---TFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQAL 157 (210)
Q Consensus 117 i~dR~---~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~l 157 (210)
+=.-. .|++..+.-. -.+-++++-+++..+| +.++..|
T Consensus 92 li~~~~~~~~~~~~~~~~--~~~~~~~l~~ll~~LP-~~n~~~L 132 (203)
T cd04386 92 LLTYNLYEDWVQAANKPD--EDERLQAIWRILNKLP-RENRDNL 132 (203)
T ss_pred cCCHHHHHHHHHHHccCC--HHHHHHHHHHHHHHCC-HHHHHHH
Confidence 65543 4444432211 1233455666666666 4565555
No 48
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=33.68 E-value=51 Score=25.30 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=26.2
Q ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4283 113 IPDEITDRKTFLETIKEIASAIKKLLDAVNEV 144 (210)
Q Consensus 113 IPdei~dR~~FL~tIKeIAsaIK~lLdavN~v 144 (210)
=|.. .++..|-+.+.+||.+...|||++-.-
T Consensus 36 ~Ps~-an~eaF~~AV~eva~at~~LL~~L~~~ 66 (78)
T PF10041_consen 36 KPSA-ANAEAFDRAVAEVAAATRRLLDSLPTR 66 (78)
T ss_pred Ccch-hhHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 3555 788899999999999999999987543
No 49
>PF08388 GIIM: Group II intron, maturase-specific domain; InterPro: IPR013597 This region is found mainly in various bacterial and archaeal species, but a few members of this family are expressed by fungal and chlamydomonal species. It has been implicated in the binding of intron RNA during reverse transcription and splicing [].
Probab=33.49 E-value=60 Score=22.84 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=18.5
Q ss_pred HHHHHHHHHH------HHHHHHHHHHhhhhh
Q psy4283 122 TFLETIKEIA------SAIKKLLDAVNEVSG 146 (210)
Q Consensus 122 ~FL~tIKeIA------saIK~lLdavN~v~~ 146 (210)
.|.+.||+|- -++.++++.+|.++.
T Consensus 3 ~~~~kik~~~~~~~~~~~~~~~i~~LN~~lr 33 (80)
T PF08388_consen 3 RFRRKIKEITRRRNRGKSLEELIKKLNPILR 33 (80)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 5677777777 367788888888876
No 50
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=32.14 E-value=24 Score=26.61 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=18.3
Q ss_pred CccccchHHHHHHHHHHHHHHH
Q psy4283 114 PDEITDRKTFLETIKEIASAIK 135 (210)
Q Consensus 114 Pdei~dR~~FL~tIKeIAsaIK 135 (210)
|+||+.|+.|+..++.--+.||
T Consensus 76 ~~Ei~~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 76 EEEISRRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999988666554
No 51
>PHA02674 ORF107 virion morphogenesis; Provisional
Probab=32.03 E-value=38 Score=24.75 Aligned_cols=14 Identities=64% Similarity=0.733 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhh
Q psy4283 131 ASAIKKLLDAVNEV 144 (210)
Q Consensus 131 AsaIK~lLdavN~v 144 (210)
+++||+|.++||.-
T Consensus 29 laaIkelis~IN~k 42 (60)
T PHA02674 29 AAAIKMLMDLVNER 42 (60)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666654
No 52
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=31.07 E-value=3.3e+02 Score=28.18 Aligned_cols=84 Identities=17% Similarity=0.264 Sum_probs=54.3
Q ss_pred HHHHHHhHHHHHHHhc-cCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhhhhhhhc-chhhhH
Q psy4283 96 FQELNKKSCALKKILS-RIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKF-SKRFSN 173 (210)
Q Consensus 96 f~el~~kA~~LK~iLS-rIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~KreFV~y-SKrFS~ 173 (210)
-+.|..-|..|+++=. .++.-.+....-.+.|+.|-+....|-.+||.+...+. ..+.-|..+=.++|+- +|.|.+
T Consensus 644 ~~~L~~~a~~l~~~~~~~v~pl~~~~~~L~~~l~~L~~~~~~l~~~i~~ll~~v~--~aq~fL~~~~~~ii~~~~~~~~~ 721 (806)
T PF05478_consen 644 RNALKNEAQNLRAIQKELVSPLEQLVSKLNQSLKKLDSLSSNLQNSINILLDAVQ--RAQDFLRNNGSEIINNESKNFTD 721 (806)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHH
Confidence 3566677777777753 34444455567777777776666666666666655544 2334555555666655 889999
Q ss_pred HHHHHhhc
Q psy4283 174 TLKDYFKE 181 (210)
Q Consensus 174 TLK~YFkd 181 (210)
++.+||.+
T Consensus 722 ~~~~~~~q 729 (806)
T PF05478_consen 722 RILGYFDQ 729 (806)
T ss_pred HHHHHHHH
Confidence 99999987
No 53
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=30.50 E-value=1.2e+02 Score=26.13 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=48.6
Q ss_pred cCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchhcccCC-------hHHHHHHHHhHHHHHHHhccCCcccc
Q psy4283 46 ANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYKLNRS-------EDAFQELNKKSCALKKILSRIPDEIT 118 (210)
Q Consensus 46 ~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~~~~~-------e~~f~el~~kA~~LK~iLSrIPdei~ 118 (210)
.-|=+..+.+.-|. +.|++ +|-+-|++|+.+....=.-.+++. .+.+.+...=|..||+-|..+|+-+=
T Consensus 17 ~IP~iv~~ci~~L~-~~gl~---~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lLK~fLReLPePLi 92 (207)
T cd04379 17 DVPIVLQKCVQEIE-RRGLD---VIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVLKDYLRELPEPLI 92 (207)
T ss_pred CcChHHHHHHHHHH-HcCCC---cCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHHHHHHHhCCCccC
Confidence 35778888887654 45654 488889988843210001112211 12334666779999999999999665
Q ss_pred chH---HHHHHHH
Q psy4283 119 DRK---TFLETIK 128 (210)
Q Consensus 119 dR~---~FL~tIK 128 (210)
.-. .|+++++
T Consensus 93 p~~~y~~~~~~~~ 105 (207)
T cd04379 93 TPQLYEMVLEALA 105 (207)
T ss_pred CHHHHHHHHHHHh
Confidence 544 4666554
No 54
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=30.21 E-value=80 Score=26.30 Aligned_cols=106 Identities=22% Similarity=0.304 Sum_probs=60.9
Q ss_pred HhcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchh--cccCChH--HH--HHHHHhHHHHHHHhccCCccc
Q psy4283 44 ETANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEY--KLNRSED--AF--QELNKKSCALKKILSRIPDEI 117 (210)
Q Consensus 44 E~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~--~~~~~e~--~f--~el~~kA~~LK~iLSrIPdei 117 (210)
...-|-|.++++..|- +.|+. +|-+-|..|..++. +.+ .+++... .+ .+...=|..||+-|-.+|+-+
T Consensus 12 ~~~vP~~l~~~~~~l~-~~g~~---~eGiFR~~g~~~~i--~~l~~~l~~~~~~~~~~~~~~~~va~~LK~flr~LpepL 85 (186)
T cd04377 12 DRSVPLVLEKLLEHIE-MHGLY---TEGIYRKSGSANKI--KELRQGLDTDPDSVNLEDYPIHVITSVLKQWLRELPEPL 85 (186)
T ss_pred CCCCChHHHHHHHHHH-HcCCC---CCceeeCCCCHHHH--HHHHHHHhCCCcccCcccCCHHHHHHHHHHHHHcCCCcc
Confidence 4578999999998875 45554 77888888884321 111 1111111 11 256667899999999999977
Q ss_pred cchHH---HHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHH
Q psy4283 118 TDRKT---FLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALE 158 (210)
Q Consensus 118 ~dR~~---FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le 158 (210)
=.-.. |++.++.- ...+-+.++-.++..+| +.++..|.
T Consensus 86 i~~~~~~~~~~~~~~~--~~~~~i~~l~~~i~~LP-~~n~~~L~ 126 (186)
T cd04377 86 MTFELYENFLRAMELE--EKQERVRALYSVLEQLP-RANLNTLE 126 (186)
T ss_pred CCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHCC-HHHHHHHH
Confidence 55443 44433310 01122344445555555 55666554
No 55
>PTZ00484 GTP cyclohydrolase I; Provisional
Probab=30.04 E-value=64 Score=29.49 Aligned_cols=58 Identities=24% Similarity=0.224 Sum_probs=38.6
Q ss_pred hccCCccccchHHHHHHHHHHHHHHHHHHHHH-hhhhhcCCCCchhHHHHHhhhhhhhcchhhhHHHHHHhhc
Q psy4283 110 LSRIPDEITDRKTFLETIKEIASAIKKLLDAV-NEVSGFIPGPSNKQALEQRKREFVKFSKRFSNTLKDYFKE 181 (210)
Q Consensus 110 LSrIPdei~dR~~FL~tIKeIAsaIK~lLdav-N~v~~~~~~~~~k~~le~~KreFV~ySKrFS~TLK~YFkd 181 (210)
+|.++..-.++..--+.+++|+++++.+|+|+ .+= + .|. ...+--+|+...++++|..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~ie~avr~iL~al~GeD------p-~Re-------gL~~TP~RVak~~~e~~~G 114 (259)
T PTZ00484 56 GPSTESSPTCATLMEEKKGAIESARRKILKSLEGED------P-DRD-------GLKKTPKRVAKALEFLTKG 114 (259)
T ss_pred cccccCCccccccchhhHHHHHHHHHHHHHHhcCCC------C-CCc-------chhhhHHHHHHHHHHHHhc
Confidence 44555566667777788999999999999999 662 1 112 2344556666666666654
No 56
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=29.97 E-value=3.8e+02 Score=23.48 Aligned_cols=113 Identities=18% Similarity=0.196 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchhcccCChHHHHHHHHhHHHHHHHhc
Q psy4283 32 ASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYKLNRSEDAFQELNKKSCALKKILS 111 (210)
Q Consensus 32 A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~~~~~e~~f~el~~kA~~LK~iLS 111 (210)
.++.+|.-+.+.=+.|-++.+.-....=. +..+.+++-.+++. +..+ .++ .=+.+|
T Consensus 10 ~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~----~~~F~~aL~~~g~~----~~~~-----~~~------~i~~~l----- 65 (215)
T cd07604 10 SLEGDRVGLQKLKKAVKAIHNSGLAHVEN----ELQFAEALEKLGSK----ALSR-----EEE------DLGAAF----- 65 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhcc----ccCc-----ccH------HHHHHH-----
Confidence 56667777777666665555433322211 36777888888776 3221 111 111223
Q ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC----CchhHHHHHhhhhhhhcchhhhHHHHH
Q psy4283 112 RIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPG----PSNKQALEQRKREFVKFSKRFSNTLKD 177 (210)
Q Consensus 112 rIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~----~~~k~~le~~KreFV~ySKrFS~TLK~ 177 (210)
..|-.+++||++.-+.|.+-+|..+..-.. ..-+...+..||.|-|.|+.+..-.+.
T Consensus 66 ---------~kF~~~l~El~~~~~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~k 126 (215)
T cd07604 66 ---------LKFSVFTKELAALFKNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKASK 126 (215)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999999999999887653211 223344568899999999877554433
No 57
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=29.57 E-value=49 Score=28.37 Aligned_cols=105 Identities=19% Similarity=0.324 Sum_probs=56.9
Q ss_pred cCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchhcccCCh----HHHHHHHHhHHHHHHHhccCCccccchH
Q psy4283 46 ANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYKLNRSE----DAFQELNKKSCALKKILSRIPDEITDRK 121 (210)
Q Consensus 46 ~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~~~~~e----~~f~el~~kA~~LK~iLSrIPdei~dR~ 121 (210)
.-|-+..+.+..| ++.|++ +|-+-|+.|+.+..+.=--.+++.. ++..+...=|..||.-|..+|+-+=-..
T Consensus 8 ~iP~iv~~ci~~l-~~~gl~---~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~ 83 (206)
T cd04376 8 QVPRLVESCCQHL-EKHGLQ---TVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRE 83 (206)
T ss_pred CCCHHHHHHHHHH-HHcCCC---CCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHH
Confidence 4677888888655 445553 7788888887433210000111111 1122445678999999999999765443
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHH
Q psy4283 122 ---TFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALE 158 (210)
Q Consensus 122 ---~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le 158 (210)
.|+++-+. .-.+-+.++-.++...| +.++..|.
T Consensus 84 ~y~~~i~~~~~---~~~~~~~~l~~li~~LP-~~n~~~L~ 119 (206)
T cd04376 84 LYTAFIGTALL---EPDEQLEALQLLIYLLP-PCNCDTLH 119 (206)
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHHCC-HHHHHHHH
Confidence 34443220 01233445555556666 45555553
No 58
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.04 E-value=1.5e+02 Score=25.68 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCCC---CchhHHHHHhhhhhhhcchhhhHHHHHHh
Q psy4283 121 KTFLETIKEIASAIKKLLDAVNEVSGFIPG---PSNKQALEQRKREFVKFSKRFSNTLKDYF 179 (210)
Q Consensus 121 ~~FL~tIKeIAsaIK~lLdavN~v~~~~~~---~~~k~~le~~KreFV~ySKrFS~TLK~YF 179 (210)
+.|.+++++|.+..-.|++-++.++..-.. -..-+.+-..||.|=+.|+.|-..|.-|=
T Consensus 64 ~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~ 125 (200)
T cd07637 64 DKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVKNA 125 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999999988877652110 12224566899999999999988887753
No 59
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=28.99 E-value=1.3e+02 Score=22.28 Aligned_cols=77 Identities=13% Similarity=0.191 Sum_probs=50.7
Q ss_pred hhhhHhHHHHHHhh-hcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhc-CC-----CcccchhHHHhhccCCCCccch
Q psy4283 14 LPVLFRPILSQLEK-RDVQASQTLRAALSRTETANPGFAYDFVVGIMRQG-EL-----SVNMNESILRLQGAASDVDAVE 86 (210)
Q Consensus 14 L~~li~Pvl~eLe~-kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~-~~-----~vn~~EslLr~a~~~~~~~~~e 86 (210)
++.++.|+|.-|.+ ..+.....+..++.... |++++-....+... +. .++..-+.|+.+|......-.-
T Consensus 2 ~~~~~~piL~~L~~~g~~~~~~ei~~~v~~~~----~ls~e~~~~~~~sg~~~~~~~~ri~Wa~~~L~~aGli~~~~rG~ 77 (92)
T PF14338_consen 2 YDELMPPILEALKDLGGSASRKEIYERVAERF----GLSDEERNERLPSGQGYSRFKNRIRWARSYLKKAGLIERPKRGI 77 (92)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh----CCCHHHHHHHcccCCcchhHHHhHHHHHHHHHHCCCccCCCCCc
Confidence 46788999999988 55556666666664332 78888666555422 21 2888899999999974433335
Q ss_pred hcccCChH
Q psy4283 87 YKLNRSED 94 (210)
Q Consensus 87 ~~~~~~e~ 94 (210)
|.|+....
T Consensus 78 ~~iT~~G~ 85 (92)
T PF14338_consen 78 WRITEKGR 85 (92)
T ss_pred eEECHhHH
Confidence 66655443
No 60
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.52 E-value=1.3e+02 Score=26.02 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=38.4
Q ss_pred hHHHHHHHhccCCccccchHHHHHHHHHHHHHH--------------HHHHHHHhhhhhcCCCCchhHHHHHhhhhhhhc
Q psy4283 102 KSCALKKILSRIPDEITDRKTFLETIKEIASAI--------------KKLLDAVNEVSGFIPGPSNKQALEQRKREFVKF 167 (210)
Q Consensus 102 kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaI--------------K~lLdavN~v~~~~~~~~~k~~le~~KreFV~y 167 (210)
=...||.....+-.-+.-|+.--...-+|++++ .++|..+.+|...+....++++.+..-
T Consensus 16 l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~~~~a~~d~~------ 89 (198)
T cd07630 16 LSANMKEAAEKFLKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENIEVVAGNNEN------ 89 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 334455555555555555655555555555554 444445555544444444444444432
Q ss_pred chhhhHHHHHHhhcC
Q psy4283 168 SKRFSNTLKDYFKEG 182 (210)
Q Consensus 168 SKrFS~TLK~YFkd~ 182 (210)
-|++||++|-++-
T Consensus 90 --~Lg~~L~~Y~r~i 102 (198)
T cd07630 90 --TLGLTLDLYSRYS 102 (198)
T ss_pred --hHHHHHHHHHHHH
Confidence 3667777776663
No 61
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=27.91 E-value=1.3e+02 Score=23.16 Aligned_cols=37 Identities=22% Similarity=0.461 Sum_probs=28.7
Q ss_pred HHHHHHhHHHHHHHhccCCccccchHHHHHHHHHHHHH
Q psy4283 96 FQELNKKSCALKKILSRIPDEITDRKTFLETIKEIASA 133 (210)
Q Consensus 96 f~el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsa 133 (210)
-.++......|.....++|++ .+=+.||..|-++|.+
T Consensus 29 ~~~~~~~~~~l~~~~~~lP~~-~~~~~ll~~l~~~A~~ 65 (144)
T PF04350_consen 29 KKQLEQLEQQLEELLKKLPAE-EEIPSLLEDLNRLAKK 65 (144)
T ss_dssp HHHHHHHHHHHHHHHHCTTGG-GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHHH
Confidence 356666667788888999998 4678999998888764
No 62
>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments. They seem to recognise single-stranded DNA ends generated by staggered breaks occuring at recombination hot spots []. Translin folds into an alpha-alpha superhelix, consisting of two curved layers of alpha/alpha topology [, ].; GO: 0043565 sequence-specific DNA binding; PDB: 3QB5_K 3PJA_L 1J1J_D 3RIU_C 3AXJ_B 4DG7_C 2QVA_C 2QRX_A 1KEY_C.
Probab=27.16 E-value=1.7e+02 Score=24.78 Aligned_cols=55 Identities=29% Similarity=0.500 Sum_probs=33.6
Q ss_pred HHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhhhhhhhcchhhhHHHHHHh
Q psy4283 108 KILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFSKRFSNTLKDYF 179 (210)
Q Consensus 108 ~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~KreFV~ySKrFS~TLK~YF 179 (210)
-.|-|+..+ +-...++..++....|++++..+. . .+ .-.|.+|++.+|.-|.+|-
T Consensus 23 ~~lhr~~~~--~~~~~l~~a~~~l~~l~~~~~~l~-~---~~-----------~~~~~~y~~~~s~~lQE~v 77 (200)
T PF01997_consen 23 FALHRIDQE--KAEKILEEAEEKLKELKKLLKQLA-E---LP-----------GHPFYRYHGAYSPGLQEYV 77 (200)
T ss_dssp HHCCTCTTH--HHHHHHHHHHHHHHHHHCHSHHHH-H---CT-----------TCGHHHHGGGTHHHHHHHH
T ss_pred HHHHhcccc--chHHHHHHHHHHHHHHHHHHhhhc-c---cC-----------CCcHHHHHHHHHHHHHHHH
Confidence 337787772 223555555555555555555555 2 22 1138899999999999883
No 63
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=26.81 E-value=58 Score=27.26 Aligned_cols=107 Identities=19% Similarity=0.250 Sum_probs=61.6
Q ss_pred HhcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchh--cccCChH-HH--HHHHHhHHHHHHHhccCCcccc
Q psy4283 44 ETANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEY--KLNRSED-AF--QELNKKSCALKKILSRIPDEIT 118 (210)
Q Consensus 44 E~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~--~~~~~e~-~f--~el~~kA~~LK~iLSrIPdei~ 118 (210)
...-|-+..+.+..|-+. |++ .|-+.|..|.++.. +++ .+++.+. .+ .+...-|..||+-|..+|+-+=
T Consensus 12 ~~~vP~~i~~~i~~l~~~-g~~---~eGiFR~~g~~~~i--~~l~~~~~~~~~~~~~~~~~~~va~~lK~flreLpepLi 85 (192)
T cd04402 12 DDNLPKPILDMLSLLYQK-GPS---TEGIFRRSANAKAC--KELKEKLNSGVEVDLKAEPVLLLASVLKDFLRNIPGSLL 85 (192)
T ss_pred CCCCCHHHHHHHHHHHHh-CCC---CCCeeeCCCcHHHH--HHHHHHHhCCCCCCCccCCHHHHHHHHHHHHHhCCCccC
Confidence 567788888888777765 543 47788888885422 111 1112111 12 2455679999999999999766
Q ss_pred chHHHHHHHHHHHH--HHHHHHHHHhhhhhcCCCCchhHHHH
Q psy4283 119 DRKTFLETIKEIAS--AIKKLLDAVNEVSGFIPGPSNKQALE 158 (210)
Q Consensus 119 dR~~FL~tIKeIAs--aIK~lLdavN~v~~~~~~~~~k~~le 158 (210)
....+-.-++ ++. .-.+-++++-.++...| ..++..|.
T Consensus 86 ~~~~~~~~~~-~~~~~~~~~~i~~l~~~i~~LP-~~n~~~L~ 125 (192)
T cd04402 86 SSDLYEEWMS-ALDQENEEEKIAELQRLLDKLP-RPNVLLLK 125 (192)
T ss_pred CHHHHHHHHH-HHccCCHHHHHHHHHHHHHHCC-HHHHHHHH
Confidence 6553322222 221 01123445555666666 45666665
No 64
>PF08663 HalX: HalX domain; InterPro: IPR013971 HalX is a protein of unknown function, previously mis-annotated as HoxA-like transcriptional regulator. It is C-terminal to a CheY-like superfamily domain and suggests a role as a response regulator.
Probab=26.11 E-value=70 Score=23.67 Aligned_cols=36 Identities=25% Similarity=0.440 Sum_probs=29.6
Q ss_pred hHHHHHHHHhHHHHHHHhccCCccccchHHHHHHHHH
Q psy4283 93 EDAFQELNKKSCALKKILSRIPDEITDRKTFLETIKE 129 (210)
Q Consensus 93 e~~f~el~~kA~~LK~iLSrIPdei~dR~~FL~tIKe 129 (210)
.++|++|..+...|+.=|..+-+++.|. -|...+++
T Consensus 35 seeY~eL~~ri~~lr~~ld~~~~~~d~~-Df~~~f~~ 70 (71)
T PF08663_consen 35 SEEYQELEDRIEELRAELDDTLDEFDDD-DFEAAFRD 70 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcchh-HHHHHHhc
Confidence 5589999999999999999988888887 77665543
No 65
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=25.71 E-value=1.1e+02 Score=24.57 Aligned_cols=82 Identities=12% Similarity=0.159 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCCccc------chhHHHhhccCCCCccchhcccCChHHHHHHHHhHHH-HHHH------h--ccCCcc
Q psy4283 52 YDFVVGIMRQGELSVNM------NESILRLQGAASDVDAVEYKLNRSEDAFQELNKKSCA-LKKI------L--SRIPDE 116 (210)
Q Consensus 52 ~dfV~~IL~r~~~~vn~------~EslLr~a~~~~~~~~~e~~~~~~e~~f~el~~kA~~-LK~i------L--SrIPde 116 (210)
+.....+|++.|++++= ++..+. .-||.+...+.-...+.+..-. -.++ . .-|||=
T Consensus 46 ~~~a~~~l~~~Gid~~~h~s~~lt~~~~~---------~~DlIl~M~~~~~~~l~~~~p~~~~k~~~l~~~~~~~~I~DP 116 (144)
T PRK11391 46 DATAADVAANHGVSLEGHAGRKLTAEMAR---------NYDLILAMESEHIAQVTAIAPEVRGKTMLFGQWLEQKEIPDP 116 (144)
T ss_pred CHHHHHHHHHcCCCcCCCccCcCCHHHHh---------hCCEEEECCHHHHHHHHHHCCCCcCeEEehhHhCCCCCCCCC
Confidence 46667788888776431 212211 1267777766655555333211 1111 1 146776
Q ss_pred c-cchHHHHHHHHHHHHHHHHHHHHHh
Q psy4283 117 I-TDRKTFLETIKEIASAIKKLLDAVN 142 (210)
Q Consensus 117 i-~dR~~FL~tIKeIAsaIK~lLdavN 142 (210)
. .+...|-++..+|..+|+.||+.++
T Consensus 117 y~~~~~~f~~~~~~I~~~i~~ll~~l~ 143 (144)
T PRK11391 117 YRKSQDAFEHVYGMLERASQEWAKRLS 143 (144)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5 3577899999999999999998765
No 66
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=25.56 E-value=1.2e+02 Score=25.54 Aligned_cols=72 Identities=17% Similarity=0.250 Sum_probs=47.5
Q ss_pred HhcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchhc--ccCCh--H--HHHHHHHhHHHHHHHhccCCccc
Q psy4283 44 ETANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYK--LNRSE--D--AFQELNKKSCALKKILSRIPDEI 117 (210)
Q Consensus 44 E~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~--~~~~e--~--~f~el~~kA~~LK~iLSrIPdei 117 (210)
+..-|-+..+++.-| ++.|++ +|-+-|..|+.+.. ++++ ++... . +-.+...=|..||.-|..+|+-+
T Consensus 12 ~~~iP~ii~~~i~~l-~~~gl~---~EGIFR~sGs~~~i--~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLReLPePL 85 (186)
T cd04406 12 DRSVPLVVEKLINYI-EMHGLY---TEGIYRKSGSTNKI--KELRQGLDTDANSVNLDDYNIHVIASVFKQWLRDLPNPL 85 (186)
T ss_pred CCCCCcHHHHHHHHH-HHhCCC---CCceeeCCCcHHHH--HHHHHHHccCCCCCCcccCCHHHHHHHHHHHHHhCCCcc
Confidence 557899999999765 556665 78999999985432 1111 12111 1 11356678999999999999866
Q ss_pred cchH
Q psy4283 118 TDRK 121 (210)
Q Consensus 118 ~dR~ 121 (210)
=...
T Consensus 86 i~~~ 89 (186)
T cd04406 86 MTFE 89 (186)
T ss_pred CCHH
Confidence 5554
No 67
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.17 E-value=2.7e+02 Score=24.33 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhcC-CC--CchhHHHHHhhhhhhhcchhhhHHHHHHhhcC
Q psy4283 120 RKTFLETIKEIASAIKKLLDAVNEVSGFI-PG--PSNKQALEQRKREFVKFSKRFSNTLKDYFKEG 182 (210)
Q Consensus 120 R~~FL~tIKeIAsaIK~lLdavN~v~~~~-~~--~~~k~~le~~KreFV~ySKrFS~TLK~YFkd~ 182 (210)
-..|..++.||.+.=..|+|-++.++... .. -..-+.+-..||.|-|.|-.+=..|..|=+-.
T Consensus 63 l~kF~~~l~ei~~~~~~L~~q~~~~l~~~L~~F~k~dl~~vke~kk~FdK~s~~~~~aL~K~~~~~ 128 (200)
T cd07638 63 LTKFSDTLQEMINYHTILFDQAQRSIKAQLQTFVKEDLRKFKDAKKQFDKVSEEKENALVKNAQVQ 128 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHhccCC
Confidence 34799999999999999999888775521 10 22234566779999999988888888887653
No 68
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=24.59 E-value=2.6e+02 Score=21.90 Aligned_cols=38 Identities=18% Similarity=0.416 Sum_probs=26.0
Q ss_pred HHHHhHHHHHHHhccCCccccchHHHHHHHHHHHHHHHHH
Q psy4283 98 ELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKL 137 (210)
Q Consensus 98 el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~l 137 (210)
+++..-..|-.++..+|++ +|..+|..++.....+.++
T Consensus 84 ~l~~~~~~ll~~~~~L~~~--~~~~~l~~l~~~~~~~~~~ 121 (135)
T PRK09706 84 ELSEDQKELLELFDALPES--EQDAQLSEMRARVENFNKL 121 (135)
T ss_pred CCCHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHH
Confidence 3445556677788888987 6778888777655555444
No 69
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=24.43 E-value=6.1e+02 Score=24.74 Aligned_cols=95 Identities=13% Similarity=0.200 Sum_probs=64.3
Q ss_pred HHHHhHHHHHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhhhhhhhcchhhhHHHHH
Q psy4283 98 ELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFSKRFSNTLKD 177 (210)
Q Consensus 98 el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~KreFV~ySKrFS~TLK~ 177 (210)
..+.++..|.++=+-+++- ++ ..|.+++.++.+|++++...-.++..|+.+-.+=+.++..-++.++.|.+
T Consensus 94 ~~~~~~~~l~~le~~f~~~-~~--------~gl~~~l~~ff~a~~~la~~P~~~~~r~~vl~~a~~La~~~n~~~~~L~~ 164 (507)
T PRK07739 94 YWETKADALSQMEDIMNEP-SD--------TGLNKVLDQFWNSLQELSKNPENLGARSVVRQRAQALAETFNYLSQSLTD 164 (507)
T ss_pred hHHHHHHHHHHHHHHhCCC-Cc--------chHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666655555542 23 34888999999999999654444778888888888888888888888887
Q ss_pred HhhcCCcchhhhhHHHHHHHHHHHHHHHh
Q psy4283 178 YFKEGQANSVYVSALYLIHQTNMIMVTVK 206 (210)
Q Consensus 178 YFkd~~~~~Vf~SAn~Li~qTn~il~t~k 206 (210)
.-++ +--.....|.|.|.++..+-
T Consensus 165 ~~~~-----~~~~i~~~V~~iN~ll~~Ia 188 (507)
T PRK07739 165 IQND-----LKSEIDVTVKEINSLASQIS 188 (507)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 7555 33344555666666665553
No 70
>PF10428 SOG2: RAM signalling pathway protein; InterPro: IPR019487 The RAM signalling pathway regulates Ace2p transcription factor activity and cellular morphogenesis in Saccharomyces cerevisiae (Baker's yeast), and is thought to be conserved amongst eukaryotes []. This entry is found in one of the components of this pathway, the leucine-rich repeat-containing protein SOG2.
Probab=24.20 E-value=2.2e+02 Score=27.54 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=71.3
Q ss_pred hhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHHHh-hccCCCCccchhcccCChHHHHHHHHhHH
Q psy4283 26 EKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESILRL-QGAASDVDAVEYKLNRSEDAFQELNKKSC 104 (210)
Q Consensus 26 e~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslLr~-a~~~~~~~~~e~~~~~~e~~f~el~~kA~ 104 (210)
...|...-+.|+.|-..|=.-.|.++..|-+.+....+-.- +++++.+. .... + .=..--+-..
T Consensus 298 d~idekl~~~L~~at~~a~~vlp~l~~~~~~~~~~a~~~~~-~~~~~~~k~k~L~---~-----------~C~~~~~~T~ 362 (445)
T PF10428_consen 298 DRIDEKLYLALQNATDLALHVLPQLTSQFSKSARAAAQQRA-IPPSLVQKWKELI---S-----------KCNSAIDQTE 362 (445)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCHHHHHHHHHHH---H-----------HHHHHHHHHH
Confidence 34566788999999999999999999999988887543222 55555442 1110 0 0011223456
Q ss_pred HHHHHhccCC-----c--cccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy4283 105 ALKKILSRIP-----D--EITDRKTFLETIKEIASAIKKLLDAVNEVSGFIP 149 (210)
Q Consensus 105 ~LK~iLSrIP-----d--ei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~ 149 (210)
.||.=|+.|- . -+.+++.|.|.++.--.+|=+++-.+=++.+.++
T Consensus 363 ~L~~rLs~ik~~~~ep~~~~~~~~~fwe~~~~Fiks~i~l~~~iK~~~~~~~ 414 (445)
T PF10428_consen 363 RLKSRLSTIKNQLKEPGGGIREQKEFWEDCNSFIKSWISLLAKIKEIMKDLP 414 (445)
T ss_pred HHHHHHHHHHhhccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 7888888888 3 4778888877777666666666666655555443
No 71
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=24.08 E-value=1.2e+02 Score=22.32 Aligned_cols=12 Identities=33% Similarity=0.689 Sum_probs=4.9
Q ss_pred hhhhcchhhhHH
Q psy4283 163 EFVKFSKRFSNT 174 (210)
Q Consensus 163 eFV~ySKrFS~T 174 (210)
+|-+..++|.+-
T Consensus 86 ~fq~~q~~~~~~ 97 (102)
T PF14523_consen 86 EFQKAQRRYAEK 97 (102)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 72
>PF12699 phiKZ_IP: phiKZ-like phage internal head proteins; InterPro: IPR024413 Phage internal head proteins (IP) are proteins that are encoded by a bacteriophage and assembled into the mature virion inside the capsid head. The most analogous characterised IP proteins are those of bacteriophage T4, which are known to be proteolytically processed during phage maturation, and then subsequently injected into the host cell during infection. The phiKZ_IP family consists of internal head proteins encoded by phiKZ-like phages. Each phage encodes three to six members of this family []. Members of the family reside in the head [] and are cleaved during phage maturation to separate an N-terminal propeptide from a C-terminal domain. The C-terminal domain remains in the mature capsid. The N-terminal propeptide domain is either mostly or completely removed from the mature capsid. In one case, an unrelated polypeptide is embedded in the propeptide and also remains in the mature capsid. The phiKZ-like IP proteins are not discernibly homologous to the T4 IP proteins, and it is not known if the phiKZ-like IP proteins are injected into the host cell, or have some other function within the head.
Probab=24.07 E-value=2.1e+02 Score=26.60 Aligned_cols=69 Identities=29% Similarity=0.323 Sum_probs=46.2
Q ss_pred HHHHHHHhHHHHHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhhhhhhhcc
Q psy4283 95 AFQELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFS 168 (210)
Q Consensus 95 ~f~el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~KreFV~yS 168 (210)
.-.++.+...+|+.|+.+ +.+++.--+.|+....+|+++.|+++..-... .....+.+..--++.|+-.
T Consensus 256 ~~~~i~~~l~~l~~i~~~----l~~~~~~~~~~~~~~d~i~q~a~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~ 324 (339)
T PF12699_consen 256 SASEIRAILKALSGILKR----LQDAKEGDKKIKAVKDAIKQLADAVRKNERRM-GKAAWDVAREASRKLVRAV 324 (339)
T ss_pred ChHHHHHHHHHHHHHHHH----HHHHHHhhhhhHHHHHHHHHHHHHHhhcccch-hHHHHHHHHHHHHHHHHHH
Confidence 346788999999998855 45666666666666689999999999774444 3444555555555555433
No 73
>PF05635 23S_rRNA_IVP: 23S rRNA-intervening sequence protein; InterPro: IPR008815 This family consists of bacterial proteins encoded within an intervening sequence present within some 23S rRNA genes[]. The function of these proteins is not known, but a structural study indicates that each momonmer folds into an antiparallel four-helix bundle, while the overall protein is a homopentamer with a toroid-shaped structure containing a tapered central channel [].; PDB: 2GSC_E 2RLD_D.
Probab=23.65 E-value=1.9e+02 Score=21.82 Aligned_cols=91 Identities=23% Similarity=0.213 Sum_probs=60.0
Q ss_pred cchhhhHhHHHHHHhhh-cH-HHHHHHHHHHH----HHHhcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccc
Q psy4283 12 LILPVLFRPILSQLEKR-DV-QASQTLRAALS----RTETANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAV 85 (210)
Q Consensus 12 ~~L~~li~Pvl~eLe~k-d~-~A~qtLRaAf~----kAE~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~ 85 (210)
.-|..-++++...+.+. +. -.-|-.|+|.+ -||...-+-.-|++..+-. +--+.+=..+.|+++-..
T Consensus 13 ~~l~~~i~~~~~~~p~~e~~~l~~Qi~raa~SI~~NIaEg~~r~s~~d~~~~l~i-A~~s~~E~~~~L~~a~~~------ 85 (110)
T PF05635_consen 13 MELALEIYELTKSFPKEEKFSLRDQIRRAATSIPANIAEGNGRRSKKDFIRFLYI-ARGSLAELRYWLELARDL------ 85 (110)
T ss_dssp HHHHHHHHHHHCCCHCCGTTTHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHH-HHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHhCcHhhhhhHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHc------
Confidence 34555666666665442 22 47777777777 5777676667788865533 222455566788887773
Q ss_pred hhcccCChHHHHHHHHhHHHHHHHhcc
Q psy4283 86 EYKLNRSEDAFQELNKKSCALKKILSR 112 (210)
Q Consensus 86 e~~~~~~e~~f~el~~kA~~LK~iLSr 112 (210)
.|. +++++.++...+..|.++|++
T Consensus 86 ~~i---~~~~~~~l~~~~~ei~~~L~~ 109 (110)
T PF05635_consen 86 GYI---SEEEYEELKKELEEISKMLNG 109 (110)
T ss_dssp TSS----HHHHHHHHHHHHHHHHHHHH
T ss_pred CCC---CHHHHHHHHHHHHHHHHHHcC
Confidence 332 356889999999999999875
No 74
>COG5558 Transposase [DNA replication, recombination, and repair]
Probab=23.41 E-value=55 Score=29.61 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=19.0
Q ss_pred HHHHHhhcCCcchhhhhHH----HHHHH
Q psy4283 174 TLKDYFKEGQANSVYVSAL----YLIHQ 197 (210)
Q Consensus 174 TLK~YFkd~~~~~Vf~SAn----~Li~q 197 (210)
-||+|||-+++.+=|++-- .+|+|
T Consensus 208 fLkeYFKRn~sEagfs~dKRrtgw~I~q 235 (261)
T COG5558 208 FLKRYFKRNLSEAGFSADKRRFGWLIRQ 235 (261)
T ss_pred HHHHHHhhhccccchhhhhHHhhhHHHH
Confidence 4999999999999887654 36666
No 75
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=23.28 E-value=83 Score=24.31 Aligned_cols=41 Identities=10% Similarity=0.233 Sum_probs=26.5
Q ss_pred hcchhhhHHHHHHhhcCCcchhhhhHHHHHHHHHHHHHHHhh
Q psy4283 166 KFSKRFSNTLKDYFKEGQANSVYVSALYLIHQTNMIMVTVKS 207 (210)
Q Consensus 166 ~ySKrFS~TLK~YFkd~~~~~Vf~SAn~Li~qTn~il~t~k~ 207 (210)
.-+..|=+-|-+|||+|+.-+ =.=|-+++.++..++...-+
T Consensus 51 ~it~efv~~mie~FK~~K~Lh-kkyv~~Il~~~~~llk~~Ps 91 (95)
T PF08321_consen 51 PITLEFVKAMIEWFKNQKKLH-KKYVYQILLEAKKLLKQLPS 91 (95)
T ss_dssp B--HHHHHHHHHHHHCT-----HHHHHHHHHHHHHHHHTS-S
T ss_pred CCCHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHHHHhCcC
Confidence 356677788999999997665 33456789999988876544
No 76
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=23.16 E-value=69 Score=26.83 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=43.9
Q ss_pred cCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchh--cccCCh-H---HHHHHHHhHHHHHHHhccCCccccc
Q psy4283 46 ANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEY--KLNRSE-D---AFQELNKKSCALKKILSRIPDEITD 119 (210)
Q Consensus 46 ~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~--~~~~~e-~---~f~el~~kA~~LK~iLSrIPdei~d 119 (210)
.-|-+.++.+..|- +.|++ +|-+-|..|..+.. +++ .+++.+ . ...+...=|..||+-|..+|+-+=.
T Consensus 21 ~iP~~i~~~i~~l~-~~gl~---~eGIFR~~G~~~~i--~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLReLPePLi~ 94 (199)
T cd04390 21 LVPILVEQCVDFIR-EHGLK---EEGLFRLPGQANLV--KQLQDAFDAGERPSFDSDTDVHTVASLLKLYLRELPEPVIP 94 (199)
T ss_pred CCChHHHHHHHHHH-HcCCC---CCCeeeCCCCHHHH--HHHHHHHhCCCCCCccccCCHHHHHHHHHHHHHhCCCccCC
Confidence 36888888886654 45654 58888888873221 121 112221 1 2246677899999999999997644
Q ss_pred h
Q psy4283 120 R 120 (210)
Q Consensus 120 R 120 (210)
.
T Consensus 95 ~ 95 (199)
T cd04390 95 W 95 (199)
T ss_pred H
Confidence 3
No 77
>PRK10132 hypothetical protein; Provisional
Probab=23.15 E-value=2.9e+02 Score=21.90 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=18.9
Q ss_pred chhhhHHHHHHhhcCCcchhhhhH
Q psy4283 168 SKRFSNTLKDYFKEGQANSVYVSA 191 (210)
Q Consensus 168 SKrFS~TLK~YFkd~~~~~Vf~SA 191 (210)
+|.-.++..+|-+|++..+|=+.|
T Consensus 71 ~~~a~~~~~~~V~~~Pw~svgiaa 94 (108)
T PRK10132 71 ARDAVGCADTFVRERPWCSVGTAA 94 (108)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHH
Confidence 467777888899999988886655
No 78
>PF01706 FliG_C: FliG C-terminal domain; InterPro: IPR023087 The flagellar motor switch in Escherichia coli and Salmonella typhimurium regulates the direction of flagellar rotation and hence controls swimming behaviour []. The switch is a complex apparatus that responds to signals transduced by the chemotaxis sensory signalling system during chemotactic behaviour []. CheY, the chemotaxis response regulator, is believed to act directly on the switch to induce tumbles in the swimming pattern, but no physical interactions of CheY and switch proteins have yet been demonstrated. The switch complex comprises at least three proteins - FliG, FliM and FliN. It has been shown that FliG interacts with FliM, FliM interacts with itself, and FliM interacts with FliN []. Several residues within the middle third of FliG appear to be strongly involved in the FliG-FliM interaction, with residues near the N- or C-termini being less important []. Such clustering suggests that FliG-FliM interaction plays a central role in switching. Analysis of the FliG, FliM and FliN sequences shows that none are especially hydrophobic or appear to be integral membrane proteins []. This result is consistent with other evidence suggesting that the proteins may be peripheral to the membrane, possibly mounted on the basal body M ring [, ]. FliG is present in about 25 copies per flagellum. This entry represents the C-terminal domain of FliG, the structure of which is known. This domain functions specifically in motor rotation [].; PDB: 3USY_B 3USW_A 3HJL_A 3AJC_A 1LKV_X 1QC7_B.
Probab=23.11 E-value=2.5e+02 Score=21.41 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=36.6
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHHHhhcc
Q psy4283 22 LSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESILRLQGA 78 (210)
Q Consensus 22 l~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~ 78 (210)
|+.|++.|+..++.+|.-+-.-|.= ..+.+.-+..++. +++...-.+-+.|.
T Consensus 1 L~~L~~~~p~la~~ir~~~f~F~dl-~~l~~~~l~~ll~----~v~~~~la~ALkga 52 (110)
T PF01706_consen 1 LESLEERDPELAEKIREKMFTFDDL-VRLDDRDLQKLLR----EVDPDDLALALKGA 52 (110)
T ss_dssp HHHHHHH-HHHHHHHHHHCS-GGGG-GGS-HHHHHHHHT----TS-HHHHHHHHCTS
T ss_pred CchHHHhCHHHHHHHHHHhhhHHHH-HcCCHHHHHHHHH----HCCHhHHHHHHccC
Confidence 5678899999999999988877776 7788888888888 44555555566666
No 79
>PTZ00059 dynein light chain; Provisional
Probab=23.06 E-value=63 Score=24.43 Aligned_cols=14 Identities=50% Similarity=0.558 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHH
Q psy4283 128 KEIASAIKKLLDAV 141 (210)
Q Consensus 128 KeIAsaIK~lLdav 141 (210)
||||..||+-+|.-
T Consensus 37 kdiA~~IK~~fD~~ 50 (90)
T PTZ00059 37 KDIAAYIKKEFDKK 50 (90)
T ss_pred HHHHHHHHHHHHhh
Confidence 89999999999953
No 80
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.04 E-value=1.9e+02 Score=26.05 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=22.0
Q ss_pred hcccCChHHHHHHHHhHHHHHHHhccC
Q psy4283 87 YKLNRSEDAFQELNKKSCALKKILSRI 113 (210)
Q Consensus 87 ~~~~~~e~~f~el~~kA~~LK~iLSrI 113 (210)
+++.++.++|.++..++..|-.-|+.|
T Consensus 44 ~kv~~~d~eF~e~~ey~d~l~~~l~~i 70 (240)
T cd07667 44 YKLRSRPLEFAAIGDYLDTFALKLGTI 70 (240)
T ss_pred hccCCCChHHHHHHHHHHHHHHhhhhH
Confidence 788899999999999998876655544
No 81
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=22.77 E-value=3.7e+02 Score=24.42 Aligned_cols=94 Identities=15% Similarity=0.179 Sum_probs=62.7
Q ss_pred HHHHhHHHHHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhhhhhhhcchhhhHHHHH
Q psy4283 98 ELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFSKRFSNTLKD 177 (210)
Q Consensus 98 el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~KreFV~ySKrFS~TLK~ 177 (210)
..+.++..|.++=+-+++.= + -.|.+.+.++.+|++++...-.....|+.+-..=+.++..-++.++.|.+
T Consensus 82 ~~~~~~~~l~~le~~~~~~~-~--------~gl~~~l~~ff~a~~~ls~~P~~~~~r~~vl~~a~~l~~~~n~~~~~L~~ 152 (322)
T TIGR02492 82 YADSRASALSQIENLFNDLD-E--------SGLSTYLNNFFNALQELAKNPDSEALRQAVLESAQALANSFNQTSNELQD 152 (322)
T ss_pred HHHHHHHHHHHHHHHhCCCC-c--------CcHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666555555432 1 14778999999999999654334778888988889999999999999988
Q ss_pred HhhcCCcchhhhhHHHHHHHHHHHHHHH
Q psy4283 178 YFKEGQANSVYVSALYLIHQTNMIMVTV 205 (210)
Q Consensus 178 YFkd~~~~~Vf~SAn~Li~qTn~il~t~ 205 (210)
.-++- --....-|.+.|.++..+
T Consensus 153 ~~~~~-----~~~i~~~V~~iN~ll~~I 175 (322)
T TIGR02492 153 LRKGI-----NAEIKSAVTEINSLLKQI 175 (322)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 76653 233344455555555444
No 82
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.44 E-value=3.8e+02 Score=23.72 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=40.8
Q ss_pred ChHHHHHHHHhHHHHHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhh
Q psy4283 92 SEDAFQELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRK 161 (210)
Q Consensus 92 ~e~~f~el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~K 161 (210)
.+..|+.++..+.-|-+ |-+++++.|+..-.|.+.+=+.++++......+..+.+.++..
T Consensus 16 ~~~rf~~lE~~~~kL~K----------e~K~Y~dav~~m~~a~~~is~~l~~~~~~~~~~~~~~~~e~y~ 75 (225)
T cd07590 16 EVQKLQQLESTTKKLYK----------DMKKYIEAVLALSKAEQRLSQDLASGPLCEDNDELRNLVEALD 75 (225)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhHHHHHHHhcccCCCChHHHHHHHHHH
Confidence 45567777766665543 5679999999999999999999999743222233344455444
No 83
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=22.41 E-value=2.1e+02 Score=25.72 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC----CchhHHHHHhhhhhhhcchhhhHHHHHHhhc----CCcchhh
Q psy4283 120 RKTFLETIKEIASAIKKLLDAVNEVSGFIPG----PSNKQALEQRKREFVKFSKRFSNTLKDYFKE----GQANSVY 188 (210)
Q Consensus 120 R~~FL~tIKeIAsaIK~lLdavN~v~~~~~~----~~~k~~le~~KreFV~ySKrFS~TLK~YFkd----~~~~~Vf 188 (210)
--.|-..-+|+++.-|.|+|..|..+...-+ ..-|+.=-..||.|-|-||.+-..+-.-=++ ++++.|.
T Consensus 65 ~~kfs~~~~El~~~~k~L~~~~~~~v~~~L~~flK~Dlr~~K~d~KK~FdK~~kDye~k~~K~ek~~r~~~K~~e~~ 141 (215)
T cd07641 65 FVKFSTLTKELSTLLKNLLQGLSHNVIFTLDSLLKGDLKGVKGDLKKPFDKAWKDYETKFTKIEKEKREHAKQHGMI 141 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCcccch
Confidence 3468899999999999999999988775433 2233222377899999999988877633222 4566666
No 84
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=22.35 E-value=57 Score=22.41 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCCCcccchhHHHhhcc
Q psy4283 52 YDFVVGIMRQGELSVNMNESILRLQGA 78 (210)
Q Consensus 52 ~dfV~~IL~r~~~~vn~~EslLr~a~~ 78 (210)
+++|..+..+.|++....+.+|--.|=
T Consensus 1 q~mv~~~s~~Tgmn~~~s~~CL~~n~W 27 (51)
T PF03943_consen 1 QEMVQQFSQQTGMNLEWSQKCLEENNW 27 (51)
T ss_dssp HHHHHHHHHHCSS-CCHHHHHHHHTTT
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 478899999999999999999864433
No 85
>PRK07081 acyl carrier protein; Provisional
Probab=22.03 E-value=78 Score=23.30 Aligned_cols=31 Identities=42% Similarity=0.695 Sum_probs=23.8
Q ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHHhh
Q psy4283 112 RIPDEITDRKTFLETIKEIASAIKKLLDAVNE 143 (210)
Q Consensus 112 rIPdei~dR~~FL~tIKeIAsaIK~lLdavN~ 143 (210)
+||++--++..| .||..|+..|.+++...|.
T Consensus 52 ~i~~~~~~~~~~-~tv~~l~~~V~~~~~~~~~ 82 (83)
T PRK07081 52 EIPDEMLNRKLF-ASIDALAGAVTQLQDAEKS 82 (83)
T ss_pred cCCHHHcCHHHh-ccHHHHHHHHHHHHhhhcc
Confidence 467776666554 7999999999999887663
No 86
>PF06015 Chordopox_A30L: Chordopoxvirus A30L protein; InterPro: IPR009257 This family consists of several short Chordopoxvirus proteins which are homologous to the A30L protein of Vaccinia virus. The vaccinia virus A30L protein is required for the association of electron-dense, granular, proteinaceous material with the concave surfaces of crescent membranes, an early step in viral morphogenesis. A30L is known to interact with the G7L protein and it has been shown that the stability of each is dependent on its association with the other [].
Probab=21.88 E-value=74 Score=24.05 Aligned_cols=17 Identities=35% Similarity=0.372 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy4283 129 EIASAIKKLLDAVNEVS 145 (210)
Q Consensus 129 eIAsaIK~lLdavN~v~ 145 (210)
.++++||+|++++|.-+
T Consensus 27 atls~i~eli~~IN~kI 43 (71)
T PF06015_consen 27 ATLSAIKELISQINLKI 43 (71)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35567777777777543
No 87
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=21.87 E-value=1.2e+02 Score=25.52 Aligned_cols=106 Identities=22% Similarity=0.337 Sum_probs=60.2
Q ss_pred HhcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchhc--ccCChH--HH--HHHHHhHHHHHHHhccCCccc
Q psy4283 44 ETANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYK--LNRSED--AF--QELNKKSCALKKILSRIPDEI 117 (210)
Q Consensus 44 E~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~--~~~~e~--~f--~el~~kA~~LK~iLSrIPdei 117 (210)
...-|=|.+..+..| ++.|++ +|-+-|.+|+.+.. ++++ ++.... .+ .+...=|..||.-|..+|+-+
T Consensus 12 ~~~vP~il~~~i~~l-~~~gl~---~EGIfR~~Gs~~~i--~~l~~~~~~~~~~~~~~~~d~h~va~lLK~flReLPepL 85 (186)
T cd04407 12 KTSVPIVLEKLLEHV-EMHGLY---TEGIYRKSGSANRM--KELHQLLQADPENVKLENYPIHAITGLLKQWLRELPEPL 85 (186)
T ss_pred CCCCCcHHHHHHHHH-HHcCCC---CCceeecCCCHHHH--HHHHHHHhcCCcccCcccCCHHHHHHHHHHHHHhCCCcc
Confidence 346788999999875 556654 78889999884332 2221 111111 11 246777999999999999976
Q ss_pred cchH---HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHH
Q psy4283 118 TDRK---TFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALE 158 (210)
Q Consensus 118 ~dR~---~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le 158 (210)
=.-. .|++..+. .+. .+-+.++-.++..+| +.++..|.
T Consensus 86 i~~~~~~~~~~~~~~-~~~-~~~~~~l~~ll~~LP-~~n~~~L~ 126 (186)
T cd04407 86 MTFAQYNDFLRAVEL-PEK-QEQLQAIYRVLEQLP-TANHNTLE 126 (186)
T ss_pred CCHHHHHHHHHHHHC-CCH-HHHHHHHHHHHHhCC-HHHHHHHH
Confidence 4443 45544321 000 112334444455566 44555444
No 88
>PRK10126 tyrosine phosphatase; Provisional
Probab=21.52 E-value=1.6e+02 Score=23.51 Aligned_cols=89 Identities=13% Similarity=0.189 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCCCcccchhHHHhhccCCCCccchhcccCChHHHHHHHHhHH-HHHHH--hc------cCCcccc-chH
Q psy4283 52 YDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYKLNRSEDAFQELNKKSC-ALKKI--LS------RIPDEIT-DRK 121 (210)
Q Consensus 52 ~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~~~~~e~~f~el~~kA~-~LK~i--LS------rIPdei~-dR~ 121 (210)
+.....+|++.|++++=+.+= ++... +...-||.+.....-..++....- ...++ |. -|||=.. +..
T Consensus 46 ~~~a~~~l~~~Gid~~~h~sr-~lt~~--~~~~~DlIl~Md~~~~~~l~~~~p~~~~k~~~l~~~~~~~~I~DP~~~~~~ 122 (147)
T PRK10126 46 DPTAISVAAEHQLSLEGHCAR-QISRR--LCRNYDLILTMEKRHIERLCEMAPEMRGKVMLFGHWDNECEIPDPYRKSRE 122 (147)
T ss_pred CHHHHHHHHHcCCCcCCCccc-cCCHH--HhccCCEEEECCHHHHHHHHHhcCcccCcEEehhhhCCCCCCCCCCCCCHH
Confidence 677778888888775311110 00000 001226888776665555544321 11222 22 3888764 577
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy4283 122 TFLETIKEIASAIKKLLDAVNE 143 (210)
Q Consensus 122 ~FL~tIKeIAsaIK~lLdavN~ 143 (210)
.|-++..+|..+|+.||..++.
T Consensus 123 ~f~~~~~~I~~~i~~l~~~l~~ 144 (147)
T PRK10126 123 AFEAVYTLLERSARQWAQALNA 144 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999998764
No 89
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.50 E-value=2.8e+02 Score=24.51 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhhhcC-CC--CchhHHHHHhhhhhhhcchhhhHHHHHHhhc
Q psy4283 119 DRKTFLETIKEIASAIKKLLDAVNEVSGFI-PG--PSNKQALEQRKREFVKFSKRFSNTLKDYFKE 181 (210)
Q Consensus 119 dR~~FL~tIKeIAsaIK~lLdavN~v~~~~-~~--~~~k~~le~~KreFV~ySKrFS~TLK~YFkd 181 (210)
.-..|..+++||.+.=..|++-++..+..- .. -..-+.+-..||.|-|.|..+-..|-.|=+=
T Consensus 66 ~l~kFs~~l~El~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~~~l 131 (215)
T cd07601 66 TLKQFSKVVDELSTMHSTLSSQLADTVLHPISQFMESDLAEIMTLKELFKAASNDHDGVLSKYSRL 131 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhC
Confidence 445799999999999999999998765521 11 1222355688999999999999999888754
No 90
>KOG3091|consensus
Probab=21.14 E-value=6.1e+02 Score=25.63 Aligned_cols=121 Identities=20% Similarity=0.196 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCCcccchhHHHhhccCCCCccchhcccCChHHHHHHHHhHHHHHHHhccCCccccchHHHHHHHHHHH
Q psy4283 52 YDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYKLNRSEDAFQELNKKSCALKKILSRIPDEITDRKTFLETIKEIA 131 (210)
Q Consensus 52 ~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~~~~~e~~f~el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIA 131 (210)
-|.+.+|.+-..-.+.|.+-+||+.--..-.--..|.|.-.|+ +|..|..+|-+-|+. |.|+.-|- ..++||+
T Consensus 372 ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE---~Lr~Kldtll~~ln~-Pnq~k~Rl---~~L~e~~ 444 (508)
T KOG3091|consen 372 ADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEE---ELRAKLDTLLAQLNA-PNQLKARL---DELYEIL 444 (508)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHH---HHHHHHHHHHHHhcC-hHHHHHHH---HHHHHHH
Confidence 3666777777666688888888874221000112455655554 577788888777776 78877774 3333333
Q ss_pred HHHHHHHHHHhhhhhcCCC-CchhHHHHHhhhhhhhcchhhhHHHHHHhhcCC
Q psy4283 132 SAIKKLLDAVNEVSGFIPG-PSNKQALEQRKREFVKFSKRFSNTLKDYFKEGQ 183 (210)
Q Consensus 132 saIK~lLdavN~v~~~~~~-~~~k~~le~~KreFV~ySKrFS~TLK~YFkd~~ 183 (210)
.++. ++++---..+.+ ...+.-.|..+++= .---++++.||.-.+|-.
T Consensus 445 r~q~---~~~~~~~~~~iD~~~~~e~~e~lt~~~-e~l~~Lv~Ilk~d~edi~ 493 (508)
T KOG3091|consen 445 RMQN---SQLKLQESYWIDFDKLIEMKEHLTQEQ-EALTKLVNILKGDQEDIK 493 (508)
T ss_pred Hhhc---chhccccceeechhhhHHHHHHHHHHH-HHHHHHHHHHHhHHHHHH
Confidence 3333 444433333333 22333334444443 334468899998777754
No 91
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=20.92 E-value=1.7e+02 Score=24.25 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhhhhhhhcchhhhHHHHHHhhc--CCcchhh-hhHHHHHHHH
Q psy4283 122 TFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFSKRFSNTLKDYFKE--GQANSVY-VSALYLIHQT 198 (210)
Q Consensus 122 ~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~KreFV~ySKrFS~TLK~YFkd--~~~~~Vf-~SAn~Li~qT 198 (210)
-|+..+++|=++=+.+++++....+.-.+|.-|.++++.-.|--.--.| |++-|+- +++..+- -...-||-..
T Consensus 3 lf~~~L~d~y~aE~Q~~~al~~m~~~a~~peLk~~l~~H~~eT~~qi~r----Le~if~~lg~~~~~~~c~~m~gli~e~ 78 (147)
T cd07909 3 LFVHELRDLYSAEKQLVKALPKMAKAATSEELKEAFESHLEETEGQVER----LEQIFESLGEKPEGKKCKAMEGLIKEA 78 (147)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCCCccCcchHHHHHHHHH
Confidence 5899999999999999999999987777789999999999888777665 5566652 3444443 3344455555
Q ss_pred HHHHH
Q psy4283 199 NMIMV 203 (210)
Q Consensus 199 n~il~ 203 (210)
..++.
T Consensus 79 ~~~~~ 83 (147)
T cd07909 79 EELIE 83 (147)
T ss_pred HHHHh
Confidence 44443
No 92
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=20.84 E-value=1.7e+02 Score=23.36 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=44.4
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHHHhh
Q psy4283 20 PILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESILRLQ 76 (210)
Q Consensus 20 Pvl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a 76 (210)
.+|...-+-...++..++..+..|+....--|.+|...++++..--..+-++.|+.-
T Consensus 85 e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~~~i~eee~h~~~l~~~l~~~ 141 (157)
T TIGR00754 85 EMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDLLEEILEDEEEHIDWLETQLELI 141 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444446999999999999999999999999999998876677777777653
No 93
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=20.83 E-value=2.5e+02 Score=24.30 Aligned_cols=107 Identities=18% Similarity=0.310 Sum_probs=60.4
Q ss_pred hcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchhc--ccCC--hHHH--HHHHHhHHHHHHHhccCCcccc
Q psy4283 45 TANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYK--LNRS--EDAF--QELNKKSCALKKILSRIPDEIT 118 (210)
Q Consensus 45 ~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~--~~~~--e~~f--~el~~kA~~LK~iLSrIPdei~ 118 (210)
..-|-+..+.+..| ++.|++ .|-+.|..|..+.. ++++ +++. ...| .+...=|..||+-|..+|+-+=
T Consensus 18 ~~IP~~i~~~i~~L-~~~gl~---~eGIFR~sG~~~~i--~~L~~~~d~~~~~~~~~~~~~~~va~lLK~flReLPePLl 91 (220)
T cd04375 18 QPLPRSIQQAMRWL-RNNALD---QVGLFRKSGVKSRI--QKLRSMIESSTDNVNYDGQQAYDVADMLKQYFRDLPEPLL 91 (220)
T ss_pred CCCChHHHHHHHHH-HHhCCC---ccceeecCCcHHHH--HHHHHHHhcCCCccCcccccHHHHHHHHHHHHHhCCCccC
Confidence 46788888888665 444554 36777777763111 1111 1110 0011 1334569999999999999765
Q ss_pred ch---HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHh
Q psy4283 119 DR---KTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQR 160 (210)
Q Consensus 119 dR---~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~ 160 (210)
.- ..|+++.+..- -.+-++++..++..+| +.++..|..-
T Consensus 92 t~~l~~~fi~~~~~~~--~~~~~~~l~~~i~~LP-~~n~~~L~~L 133 (220)
T cd04375 92 TNKLSETFIAIFQYVP--KEQRLEAVQCAILLLP-DENREVLQTL 133 (220)
T ss_pred CHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCC-HHHHHHHHHH
Confidence 54 35666543211 1234566777767777 5666666543
No 94
>PRK03826 5'-nucleotidase; Provisional
Probab=20.79 E-value=3.6e+02 Score=23.23 Aligned_cols=33 Identities=21% Similarity=0.512 Sum_probs=24.8
Q ss_pred ChHHHHHHHHhHHHHHHHhccCCccccchHHHHHHHH
Q psy4283 92 SEDAFQELNKKSCALKKILSRIPDEITDRKTFLETIK 128 (210)
Q Consensus 92 ~e~~f~el~~kA~~LK~iLSrIPdei~dR~~FL~tIK 128 (210)
-.+.+.+++. .+..++++-+|+++ |..|...+.
T Consensus 88 ~~~~~~~~E~--~a~~~l~~~LP~~l--~~~~~~~~~ 120 (195)
T PRK03826 88 IAHEYKKIEK--IAEQKLLDMLPEEL--QEDFRPLLD 120 (195)
T ss_pred hHHHHHHHHH--HHHHHHHHhCCHHH--HHHHHHHHh
Confidence 3457778887 57899999999986 566666654
No 95
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=20.74 E-value=3.9e+02 Score=22.97 Aligned_cols=32 Identities=25% Similarity=0.533 Sum_probs=23.5
Q ss_pred chhhhHhHHHHHHhhhc------------------HHHHHHHHHHHHHHH
Q psy4283 13 ILPVLFRPILSQLEKRD------------------VQASQTLRAALSRTE 44 (210)
Q Consensus 13 ~L~~li~Pvl~eLe~kd------------------~~A~qtLRaAf~kAE 44 (210)
.+|.++.=.++.+++.. .+.++.||.+|.+-+
T Consensus 15 ~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~ 64 (212)
T cd04399 15 VVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPK 64 (212)
T ss_pred CCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCC
Confidence 46777878888887631 157999999998643
No 96
>PF07328 VirD1: T-DNA border endonuclease VirD1; InterPro: IPR009933 This family consists of several T-DNA border endonuclease VirD1 proteins, which appear to be found exclusively in Agrobacterium species. Agrobacterium, a plant pathogen, is capable to stably transform the plant cell with a segment of its own DNA called T-DNA (transferred DNA). This process depends, among others, on the specialised bacterial virulence proteins VirD1 and VirD2 that excise the T-DNA from its adjacent sequences. VirD1 is thought to interact with VirD2 in this process [].; GO: 0004519 endonuclease activity
Probab=20.74 E-value=1.4e+02 Score=25.37 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhhhhhhhcchhhhH
Q psy4283 125 ETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFSKRFSN 173 (210)
Q Consensus 125 ~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~KreFV~ySKrFS~ 173 (210)
++..+|-.+|--+-+.+|++.+.+. .+++..+|--.-|=.-|-|.|++
T Consensus 74 ~~l~~il~sIg~la~Nin~i~~Aa~-~~~~pd~e~f~aER~~fGk~fA~ 121 (147)
T PF07328_consen 74 QKLEDILRSIGGLATNINQILKAAN-RTPRPDYEAFRAERKAFGKEFAD 121 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHHH
Confidence 4566666677777777777766654 34455555555555555666664
No 97
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=20.32 E-value=3.6e+02 Score=22.33 Aligned_cols=69 Identities=19% Similarity=0.339 Sum_probs=40.6
Q ss_pred HHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC-----CchhHHHHHhhhhhhhcchhhhHHHHHHhh
Q psy4283 108 KILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPG-----PSNKQALEQRKREFVKFSKRFSNTLKDYFK 180 (210)
Q Consensus 108 ~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~-----~~~k~~le~~KreFV~ySKrFS~TLK~YFk 180 (210)
.++..+-+.-.|.-.+.+|+..|-..+..=.|++=.|+++... -...++|..+|+-.- +-.+.||+|-.
T Consensus 12 ~l~~~~e~~~~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e----~~~~~Lk~yL~ 85 (162)
T PF05565_consen 12 ELLELLEEGDLDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIE----NRIDRLKEYLL 85 (162)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3333343333666677777777777777777777777776542 233455666665444 44455666643
No 98
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=20.31 E-value=2.1e+02 Score=21.95 Aligned_cols=53 Identities=26% Similarity=0.535 Sum_probs=35.7
Q ss_pred hhHHHhhccCCCCccchhcccCChHHHHHHHHhHHHHHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4283 70 ESILRLQGAASDVDAVEYKLNRSEDAFQELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEV 144 (210)
Q Consensus 70 EslLr~a~~~~~~~~~e~~~~~~e~~f~el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v 144 (210)
|-+|+||.- ...||.. .||==--+|+..+ -.|++.|-+=-+..|+..||+|..
T Consensus 20 e~LL~~Aki----Sl~DyIm----------------iKRGS~DmPe~l~--~~~~~QideeV~~LKe~IdaLNK~ 72 (79)
T PF10398_consen 20 EILLKIAKI----SLVDYIM----------------IKRGSQDMPEHLN--MAFLAQIDEEVEKLKEHIDALNKI 72 (79)
T ss_dssp HHHHHHHT------HHHHHH----------------HHTTSS---TTS---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhc----cHHHHHH----------------hcccCCcCccccc--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888877 6666654 2333334677665 589999999999999999999986
No 99
>PF08023 Antimicrobial_2: Frog antimicrobial peptide ; InterPro: IPR012521 This family consists of the major classes of antimicrobial peptides secreted from the skin of frogs that protect the frogs against invading microbes. They are typically between 10-50 amino acids long and are derived from proteolytic cleavage of larger precursors. Major classes of peptides such esculentin, gaegurin, brevinin, rugosin and ranatuerin are included in this family [].; GO: 0005576 extracellular region; PDB: 2G9L_A.
Probab=20.20 E-value=52 Score=21.19 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=15.3
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHhh
Q psy4283 122 TFLETIKEIA-----SAIKKLLDAVNE 143 (210)
Q Consensus 122 ~FL~tIKeIA-----saIK~lLdavN~ 143 (210)
.||.+||++| ++-+.+||.+.+
T Consensus 1 G~l~~~K~~ak~~~K~~a~~~L~~l~C 27 (33)
T PF08023_consen 1 GILDTLKGVAKNAAKNAAKSGLDKLKC 27 (33)
T ss_dssp -HHHHHHHHHTTTTHHHTSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4788998887 666666776654
Done!