Query psy4283
Match_columns 210
No_of_seqs 49 out of 51
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 21:37:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ajm_A Programmed cell death p 100.0 3.9E-96 1E-100 629.7 17.3 202 3-209 1-205 (213)
2 2r25_A Phosphorelay intermedia 85.1 3.6 0.00012 33.9 8.0 108 44-182 22-166 (167)
3 3gm3_A Protein tyrosine kinase 78.3 8 0.00027 31.7 7.6 115 83-207 11-140 (153)
4 1k04_A FADK 1, focal adhesion 72.9 5.7 0.0002 32.8 5.4 113 87-205 25-148 (162)
5 2l6f_A Focal adhesion kinase 1 64.7 1.8 6.2E-05 37.3 0.0 44 122-166 36-79 (215)
6 1uru_A Amphiphysin; endocytosi 51.0 48 0.0017 26.5 7.1 52 93-147 36-87 (244)
7 1s94_A S-syntaxin; three helix 47.2 70 0.0024 25.1 7.4 56 122-179 85-143 (180)
8 1mof_A Moloney murine leukemia 43.6 13 0.00045 25.7 2.2 32 126-159 3-34 (55)
9 4h8s_A DCC-interacting protein 37.3 1.2E+02 0.004 26.6 7.9 61 121-181 110-173 (407)
10 2yfa_A MCPS, methyl-accepting 36.8 1.2E+02 0.0042 24.0 7.4 60 86-146 40-100 (258)
11 3axj_A GM27569P, translin; tra 36.6 1.3E+02 0.0046 25.5 8.0 16 164-179 99-114 (249)
12 1y4m_A HERV-FRD_6P24.1 proviru 33.3 8.4 0.00029 26.5 -0.1 31 127-159 2-32 (53)
13 3kwo_A Putative bacterioferrit 31.6 34 0.0012 26.3 3.1 54 21-74 94-147 (152)
14 2q13_A DCC-interacting protein 31.1 50 0.0017 28.8 4.5 63 121-183 87-152 (385)
15 2q12_A DIP13 alpha, DCC-intera 30.2 45 0.0015 27.5 3.8 60 122-181 88-150 (265)
16 1dn1_B Syntaxin 1A, syntaxin b 28.9 1.2E+02 0.0041 25.6 6.3 23 123-145 78-100 (267)
17 2bk6_A Non-heme iron-containin 28.5 36 0.0012 26.2 2.8 54 21-74 98-151 (156)
18 4eve_A Neutrophil-activating p 28.4 45 0.0015 26.2 3.4 51 21-71 111-161 (164)
19 2cf7_A DPR; peroxide resistanc 28.3 36 0.0012 26.7 2.8 54 21-74 107-160 (165)
20 3gwk_C SAG1039, putative uncha 28.2 97 0.0033 21.3 4.8 52 126-178 23-74 (98)
21 1ez3_A Syntaxin-1A; three heli 27.9 1.7E+02 0.0059 21.1 6.9 57 122-180 54-113 (127)
22 2fjc_A Antigen TPF1; mini ferr 27.8 48 0.0016 25.6 3.4 53 21-73 102-154 (156)
23 3iq1_A DPS family protein; csg 27.3 45 0.0015 25.8 3.2 53 21-73 106-158 (159)
24 2yjk_A AFP, DPS; metal-binding 26.5 49 0.0017 25.7 3.2 52 21-73 108-159 (161)
25 1j1j_A Translin; testis/brain 26.4 2E+02 0.007 24.1 7.3 17 163-179 95-111 (240)
26 2gs4_A Protein YCIF; stress pr 26.1 83 0.0028 25.2 4.6 58 120-181 7-64 (166)
27 1zke_A Hypothetical protein HP 25.9 75 0.0026 23.5 3.9 53 70-144 22-74 (83)
28 3zbh_A ESXA; unknown function, 25.8 1.1E+02 0.0038 20.7 4.7 31 147-178 45-75 (99)
29 1qkr_A Vinculin, tail domain; 25.6 2.9E+02 0.0099 22.9 8.5 83 118-207 64-158 (188)
30 1oai_A Nuclear RNA export fact 25.5 39 0.0013 23.0 2.2 48 52-116 8-55 (59)
31 2d5k_A DPS, DPS family protein 25.5 46 0.0016 25.4 2.8 55 21-75 95-149 (156)
32 2gyq_A YCFI, putative structur 25.0 79 0.0027 25.5 4.3 57 120-180 14-70 (173)
33 2chp_A MRGA, metalloregulation 24.9 51 0.0018 25.3 3.0 52 21-72 100-151 (153)
34 3gor_A Putative metal-dependen 24.5 1E+02 0.0035 22.1 4.5 112 96-207 11-144 (157)
35 2wlu_A DPS-like peroxide resis 24.4 46 0.0016 26.4 2.8 54 21-74 117-170 (175)
36 2kz3_A Putative uncharacterize 23.7 1.2E+02 0.0042 21.8 4.7 20 45-65 7-26 (83)
37 1o9r_A Agrobacterium tumefacie 23.5 45 0.0015 25.8 2.5 53 21-73 106-158 (162)
38 2d1l_A Metastasis suppressor p 23.5 1.3E+02 0.0044 26.0 5.6 44 12-55 13-62 (253)
39 4ioe_A Secreted protein ESXB; 23.5 1.2E+02 0.004 20.6 4.4 25 153-177 50-74 (93)
40 2c2j_A DNA-binding stress resp 23.3 51 0.0018 27.4 2.9 68 21-92 136-203 (211)
41 2z90_A Starvation-inducible DN 23.3 37 0.0013 26.5 2.0 51 21-72 107-157 (161)
42 2v7k_A PRNB; IDO, TDO, biosynt 23.2 96 0.0033 28.0 4.9 35 109-146 160-194 (361)
43 2c2u_A DPS, DNA-binding stress 23.0 56 0.0019 27.0 3.1 54 21-74 149-202 (207)
44 2c41_A DPS family DNA-binding 22.5 55 0.0019 24.9 2.8 54 21-74 98-151 (158)
45 1jig_A DLP-2; dodecamer, four- 22.3 57 0.002 24.2 2.8 53 20-72 92-144 (146)
46 2yw6_A DNA protection during s 22.2 51 0.0018 26.4 2.6 53 21-74 105-157 (183)
47 4dnd_A Syntaxin-10, SYN10; str 22.2 36 0.0012 26.5 1.6 23 114-136 104-126 (130)
48 2rld_A Uncharacterized protein 22.0 75 0.0026 23.8 3.4 93 11-113 15-114 (121)
49 3dyj_A Talin-1; helix bundles, 22.0 1.1E+02 0.0038 27.7 5.0 57 112-176 263-320 (332)
50 2xgw_A Peroxide resistance pro 21.9 54 0.0018 26.9 2.8 55 21-75 133-187 (199)
51 3skq_A Mitochondrial distribut 21.8 32 0.0011 30.0 1.4 22 97-118 227-248 (249)
52 3rjs_A Dynein light chain moto 21.8 46 0.0016 24.0 2.1 14 128-141 36-49 (89)
53 3t72_q RNA polymerase sigma fa 20.8 2E+02 0.0067 20.9 5.4 66 102-183 9-84 (99)
54 2ibf_B Invasin IPAA, 70 kDa an 20.7 85 0.0029 18.4 2.6 15 101-115 10-24 (26)
55 2qho_B E3 ubiquitin-protein li 20.6 66 0.0023 22.0 2.5 30 39-68 12-41 (53)
56 3rf3_A Vinculin, metavinculin; 20.5 4E+02 0.014 22.7 9.2 92 115-206 149-245 (258)
No 1
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=100.00 E-value=3.9e-96 Score=629.72 Aligned_cols=202 Identities=50% Similarity=0.760 Sum_probs=194.7
Q ss_pred CCCCCCccccc---hhhhHhHHHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHHHhhccC
Q psy4283 3 MGEESPVTSLI---LPVLFRPILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESILRLQGAA 79 (210)
Q Consensus 3 m~~~~~~~S~~---L~~li~Pvl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~ 79 (210)
|++++|++|++ ||||++|+|++|+++|++|+|+||+||.|||+++|||++|||++||++.|++|||+|++||+||+
T Consensus 1 M~~~~~~~sl~~~~L~~l~~P~l~kle~~D~~a~qtLRaAf~kAE~~~PGf~~dfi~~iL~~~~l~vnl~Es~LR~a~~- 79 (213)
T 3ajm_A 1 MKNEAETTSMVSMPLYAVMYPVFNELERVNLSAAQTLRAAFIKAEKENPGLTQDIIMKILEKKSVEVNFTESLLRMAAD- 79 (213)
T ss_dssp ---CCCSCSGGGHHHHHTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHTHHHHHHHHHHHHHHGGG-
T ss_pred CCCcccccchhhhcchhhHHHHHHHHHhhCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCChHHHHHHhhcc-
Confidence 88988888777 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhcccCChHHHHHHHHhHHHHHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHH
Q psy4283 80 SDVDAVEYKLNRSEDAFQELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQ 159 (210)
Q Consensus 80 ~~~~~~e~~~~~~e~~f~el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~ 159 (210)
+++||+++|.|++||||+.||++||+|||||||||+||++||||||||||||||||||||+|++.++++ +|++|||
T Consensus 80 ---~~~ey~~~~~e~~fqel~~rA~~LK~iLSrIPdEI~dR~~FL~tIKeIAsaIKklLDAvn~v~~~~~~~-~k~~le~ 155 (213)
T 3ajm_A 80 ---DVEEYMIERPEPEFQDLNEKARALKQILSKIPDEINDRVRFLQTIKDIASAIKELLDTVNNVFKKYQYQ-NRRALEH 155 (213)
T ss_dssp ---CCTTTCCCCCSHHHHHHHHHHHHHHHHHHTHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS-CHHHHHH
T ss_pred ---cHHHHhcCCchHHHHHHHHHHHHHHHHHHhCchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999965 9999999
Q ss_pred hhhhhhhcchhhhHHHHHHhhcCCcchhhhhHHHHHHHHHHHHHHHhhhc
Q psy4283 160 RKREFVKFSKRFSNTLKDYFKEGQANSVYVSALYLIHQTNMIMVTVKSKC 209 (210)
Q Consensus 160 ~KreFV~ySKrFS~TLK~YFkd~~~~~Vf~SAn~Li~qTn~il~t~k~~~ 209 (210)
|||||||||||||||||+|||||++++||+||||||||||+||+|||++.
T Consensus 156 ~KreFVkySKrFS~TLKeYFkd~~~~~Vf~SAn~LI~QTn~il~Tvk~~~ 205 (213)
T 3ajm_A 156 QKKEFVKYSKSFSDTLKTYFKDGKAINVFVSANRLIHQTNLILQTFKTVA 205 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhHhhHHHHHHHhcCCcceehHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999964
No 2
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=85.11 E-value=3.6 Score=33.88 Aligned_cols=108 Identities=19% Similarity=0.290 Sum_probs=74.0
Q ss_pred HhcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchhcccCChHHHHHHHHhHHHHHHHhccCCccccchHHH
Q psy4283 44 ETANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYKLNRSEDAFQELNKKSCALKKILSRIPDEITDRKTF 123 (210)
Q Consensus 44 E~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~~~~~e~~f~el~~kA~~LK~iLSrIPdei~dR~~F 123 (210)
+.. |+|...+|...++++. +.+-.|.... . ....|.+|..-|..||-.=+.|=
T Consensus 22 dd~-p~Fv~elV~~F~edse------~~l~~L~~AL--------~---~~~D~~~L~~~aH~LKGSSAnLG--------- 74 (167)
T 2r25_A 22 DDD-SDFSKGLIIQFIDQAQ------TTFAQMQRQL--------D---GEKNLTELDNLGHFLKGSSAALG--------- 74 (167)
T ss_dssp TTS-SHHHHHHHHHHHHHHH------HHHHHHHHHH--------H---TTCCHHHHHHHHHHHHHHHHHTT---------
T ss_pred ccC-chHHHHHHHHHHHhHH------HHHHHHHHHH--------h---cccCHHHHHHHHHhhhhhHHHHH---------
Confidence 344 9999999999999763 2333333221 0 23468899999999999988875
Q ss_pred HHHHHHHHHHHHHHHHHHh-------hhhhcCCC-----------------------C-------chhHHHHHhhhhhhh
Q psy4283 124 LETIKEIASAIKKLLDAVN-------EVSGFIPG-----------------------P-------SNKQALEQRKREFVK 166 (210)
Q Consensus 124 L~tIKeIAsaIK~lLdavN-------~v~~~~~~-----------------------~-------~~k~~le~~KreFV~ 166 (210)
+..+++++..|.....+-| .+.....+ + --+++|.+-|.||..
T Consensus 75 A~rV~~~C~~le~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~k~e~~~ 154 (167)
T 2r25_A 75 LQRIAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKL 154 (167)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccccccccccccccccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 5678888899988887777 11111111 1 236899999999975
Q ss_pred cchhhhHHHHHHhhcC
Q psy4283 167 FSKRFSNTLKDYFKEG 182 (210)
Q Consensus 167 ySKrFS~TLK~YFkd~ 182 (210)
- -.-|++||+++
T Consensus 155 ~----~~~L~~~~~~~ 166 (167)
T 2r25_A 155 A----RIELSKYYNTN 166 (167)
T ss_dssp H----HHHHHHHTTSC
T ss_pred H----HHHHHHHHccc
Confidence 4 45678899874
No 3
>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A
Probab=78.34 E-value=8 Score=31.72 Aligned_cols=115 Identities=19% Similarity=0.347 Sum_probs=77.4
Q ss_pred ccchhcccCChHHHH----HHHHhHHHHHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHH
Q psy4283 83 DAVEYKLNRSEDAFQ----ELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALE 158 (210)
Q Consensus 83 ~~~e~~~~~~e~~f~----el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le 158 (210)
|+.-+.++|.++... .+=+--..|++=...-|.| .++..+|.|--++|+||.+|.+++..+| ++.++.+|
T Consensus 11 p~PTa~lDRt~D~VY~at~~VVkaV~~Ls~~v~~a~~e-----~Y~~lVK~VGl~LR~Ll~sVd~~~~~lp-~s~~~EIe 84 (153)
T 3gm3_A 11 IQPTANLDRTDDLVYLNVMELVRAVLELKNELAQLPPE-----GYVVVVKNVGLTLRKLIGSVDDLLPSLP-SSSRTEIE 84 (153)
T ss_dssp -----CCCCTTCHHHHHHHHHHHHHHHHHHHGGGCCHH-----HHHHHHHHHHHHHHHHHHHHHHHGGGSC-HHHHHHHH
T ss_pred CCCccccCcCCChHHHHHHHHHHHHHHHHhhhhhcChH-----HHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHH
Confidence 666788999998543 4555566777766666655 7889999999999999999999999999 56667777
Q ss_pred Hhhhhhh----------hcchhhhHH-HHHHhhcCCcchhhhhHHHHHHHHHHHHHHHhh
Q psy4283 159 QRKREFV----------KFSKRFSNT-LKDYFKEGQANSVYVSALYLIHQTNMIMVTVKS 207 (210)
Q Consensus 159 ~~KreFV----------~ySKrFS~T-LK~YFkd~~~~~Vf~SAn~Li~qTn~il~t~k~ 207 (210)
--+|-+= |...+||.| |++=|| .+.-.+|+.|-.=...++.+|-+
T Consensus 85 ma~k~L~kDM~eLIs~MkLAqq~~~TtL~eEyr----r~MLsaaH~LA~DaKNLlD~VD~ 140 (153)
T 3gm3_A 85 GTQKLLNKDLAELINKMRLAQQNAVTSLSEECK----RQMLTASHTLAVDAKNLLDAVDQ 140 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666442 344455543 443333 34566777777777777776643
No 4
>1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four helical bundle forming A helix-exchange transferase; 1.95A {Homo sapiens} SCOP: a.24.14.1 PDB: 1k05_A 3b71_A 1ow6_A 1ow7_A 1ow8_A 1ktm_A 1qvx_A 1pv3_A 2ra7_A* 1k40_A
Probab=72.93 E-value=5.7 Score=32.85 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=70.1
Q ss_pred hcccCChHHHH----HHHHhHHHHHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhhh
Q psy4283 87 YKLNRSEDAFQ----ELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKR 162 (210)
Q Consensus 87 ~~~~~~e~~f~----el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~Kr 162 (210)
-.++|.++... .+=+--..|+.=.-.-|. -.|+..+|.|-.++|+||-+|.+.+..+| ++.++.+|.-+|
T Consensus 25 a~lDRt~D~Vy~at~~VVkaV~~Ls~~v~~a~~-----eey~~~VK~VGl~LR~Ll~sVd~~~~~lp-~s~~rEVema~k 98 (162)
T 1k04_A 25 ANLDRSNDKVYENVTGLVKAVIEMSSKIQPAPP-----EEYVPMVKEVGLALRTLLATVDETIPLLP-ASTHREIEMAQK 98 (162)
T ss_dssp SSSCCTTCHHHHHHHHHHHHHHHHHHHHSCCCG-----GGHHHHHHHHHHHHHHHHHHHHHHGGGSC-HHHHHHHHHHHH
T ss_pred ccccccCCcHHHHHHHHHHHHHHHHHhhhhcCh-----HHHHHHHHHHHHHHHHHHHhHhhhhhccC-HHhhHHHHHHHH
Confidence 44666666442 333444445554444443 26899999999999999999999999998 677888888777
Q ss_pred hhhhcchhhhHHHHHHhhcCC-------cchhhhhHHHHHHHHHHHHHHH
Q psy4283 163 EFVKFSKRFSNTLKDYFKEGQ-------ANSVYVSALYLIHQTNMIMVTV 205 (210)
Q Consensus 163 eFV~ySKrFS~TLK~YFkd~~-------~~~Vf~SAn~Li~qTn~il~t~ 205 (210)
.+=+==+.-++.+|-==+..+ -.++-.+|+.|--=...++.+|
T Consensus 99 ~L~kDM~eLis~mklaq~~~~TtL~~EyRk~mLsaah~LA~daKNLld~V 148 (162)
T 1k04_A 99 LLNSDLGELINKMKLAQQYVMTSLQQEYKKQMLTAAHALAVDAKNLLDVI 148 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCccHHHHHHHHHHhhhHHHHHhcccHHHHH
Confidence 665444444444432111110 1345667777744444445554
No 5
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=64.71 E-value=1.8 Score=37.29 Aligned_cols=44 Identities=23% Similarity=0.452 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhhhhhhh
Q psy4283 122 TFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVK 166 (210)
Q Consensus 122 ~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~KreFV~ 166 (210)
.|+..+|+|.-.+|+||.+|++....+| ++.++.+|.-+|.+=+
T Consensus 36 eYv~lVK~VGl~LR~LL~sVDel~~~Lp-~Sa~rEIEma~KvLnK 79 (215)
T 2l6f_A 36 EYVPMVKEVGLALRTLLATVDESLPVLP-ASTHREIEMAQKLLNS 79 (215)
Confidence 4788999999999999999999998888 5666777776665533
No 6
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=50.97 E-value=48 Score=26.54 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=40.5
Q ss_pred hHHHHHHHHhHHHHHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy4283 93 EDAFQELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGF 147 (210)
Q Consensus 93 e~~f~el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~ 147 (210)
.++|.++.++-..+...+.+| +.+=+.+++.++.+..+-..|-+++.+++..
T Consensus 36 D~~fe~~~~~f~~~e~~~~~l---~k~~~~y~~~~~~~~~~~~~l~~~~~~l~~~ 87 (244)
T 1uru_A 36 DEIFDDHLNNFNRQQASANRL---QKEFNNYIRCVRAAQAASKTLMDSVCEIYEP 87 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 458999999998888888877 5556678888888887777777887776553
No 7
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=47.25 E-value=70 Score=25.12 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCC---CchhHHHHHhhhhhhhcchhhhHHHHHHh
Q psy4283 122 TFLETIKEIASAIKKLLDAVNEVSGFIPG---PSNKQALEQRKREFVKFSKRFSNTLKDYF 179 (210)
Q Consensus 122 ~FL~tIKeIAsaIK~lLdavN~v~~~~~~---~~~k~~le~~KreFV~ySKrFS~TLK~YF 179 (210)
.....|+..|..||..|.++..-....++ ++. ..-.+|--.-.-+++|.+.+.+|-
T Consensus 85 ~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~--~~Rir~~q~~~L~~kf~~~m~~yq 143 (180)
T 1s94_A 85 ELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSA--DLRIRKTQYSTISRKFVEVMSDYN 143 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999998876554431 111 122334445556677777777763
No 8
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=43.59 E-value=13 Score=25.66 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHH
Q psy4283 126 TIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQ 159 (210)
Q Consensus 126 tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~ 159 (210)
-|.+++.||..|.+.++.+....- ++|++||-
T Consensus 3 dl~~~~~si~~l~~ql~sla~vvl--QNRraLD~ 34 (55)
T 1mof_A 3 DLREVEKSISNLEKSLTSLSEVVL--QNRRGLDL 34 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 367889999999999988865433 48888874
No 9
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=37.35 E-value=1.2e+02 Score=26.64 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhc-CCC--CchhHHHHHhhhhhhhcchhhhHHHHHHhhc
Q psy4283 121 KTFLETIKEIASAIKKLLDAVNEVSGF-IPG--PSNKQALEQRKREFVKFSKRFSNTLKDYFKE 181 (210)
Q Consensus 121 ~~FL~tIKeIAsaIK~lLdavN~v~~~-~~~--~~~k~~le~~KreFV~ySKrFS~TLK~YFkd 181 (210)
..|-..+++|.+....|++-++..+-. +.. ...-+.+...||.|-++++.|-..|-.|=+-
T Consensus 110 ~~f~~~~~ei~~~~~~L~~~~~~~i~~pL~~f~k~di~~~ke~kK~Fek~~~~Yd~~l~Ky~~~ 173 (407)
T 4h8s_A 110 HYFSKVVDELNLLHTELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGLASNEHDLSMAKYSRL 173 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457777888877777777766654321 100 1233456678999999999999999998654
No 10
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=36.82 E-value=1.2e+02 Score=23.99 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=45.6
Q ss_pred hhcccCChHHHH-HHHHhHHHHHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy4283 86 EYKLNRSEDAFQ-ELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSG 146 (210)
Q Consensus 86 e~~~~~~e~~f~-el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~ 146 (210)
.|.+++.++... +..+....++..|..+-..+.+ +.-...|.+|...+...-.+.+++..
T Consensus 40 ~y~~~~d~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~~~l~~i~~~~~~Y~~~f~~~~~ 100 (258)
T 2yfa_A 40 QYMIANGDDTAAANTLAKLDAFSKQQAYLATTFKS-PENVKLLGELGDTISAYKLSLNKMRQ 100 (258)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999998888 8888888888887777666555 44555677777777777777777755
No 11
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=36.58 E-value=1.3e+02 Score=25.45 Aligned_cols=16 Identities=6% Similarity=0.364 Sum_probs=12.2
Q ss_pred hhhcchhhhHHHHHHh
Q psy4283 164 FVKFSKRFSNTLKDYF 179 (210)
Q Consensus 164 FV~ySKrFS~TLK~YF 179 (210)
|.+|+..+|.-|.+|-
T Consensus 99 ~yrY~~~~s~~lQE~V 114 (249)
T 3axj_A 99 YYRYSDHWTFITQRLI 114 (249)
T ss_dssp HHHHGGGTHHHHHHHH
T ss_pred hHHHhhhccHHHHHHH
Confidence 7788888888777763
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=33.34 E-value=8.4 Score=26.47 Aligned_cols=31 Identities=16% Similarity=0.460 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHH
Q psy4283 127 IKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQ 159 (210)
Q Consensus 127 IKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~ 159 (210)
|.+++.||..|-+.++.+....- ++|++||-
T Consensus 2 ~~~l~~sl~~l~~ql~sla~vvl--QNRraLDl 32 (53)
T 1y4m_A 2 IDTMAKALTTMQEQIDSLAAVVL--QNRRGLDM 32 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 34578889988888888865433 48888874
No 13
>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold, structural genomics, center for structural genomics of infectious diseases; 1.99A {Campylobacter jejuni} SCOP: a.25.1.0
Probab=31.61 E-value=34 Score=26.30 Aligned_cols=54 Identities=11% Similarity=0.056 Sum_probs=40.7
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHHH
Q psy4283 21 ILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESILR 74 (210)
Q Consensus 21 vl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslLr 74 (210)
++..+-+....++..+|.++..||+..---|.|++..++....-.+-+=++.|+
T Consensus 94 ml~~~l~~~~~~i~~~r~~i~~a~~~~D~~T~dll~~~l~~~Ek~~w~L~a~l~ 147 (152)
T 3kwo_A 94 VIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQ 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455579999999999999986666888888999877655777677664
No 14
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=31.12 E-value=50 Score=28.75 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhc-CCC--CchhHHHHHhhhhhhhcchhhhHHHHHHhhcCC
Q psy4283 121 KTFLETIKEIASAIKKLLDAVNEVSGF-IPG--PSNKQALEQRKREFVKFSKRFSNTLKDYFKEGQ 183 (210)
Q Consensus 121 ~~FL~tIKeIAsaIK~lLdavN~v~~~-~~~--~~~k~~le~~KreFV~ySKrFS~TLK~YFkd~~ 183 (210)
..|-+++++|++....|++-++..+.. +.. ...-+.+...||.|-+.++.|-..|-.|=.-.+
T Consensus 87 ~~f~~~~~ei~~~~~~l~~~~~~~~~~PL~~f~~~di~~~ke~kk~fek~~~~yd~al~k~~~~~k 152 (385)
T 2q13_A 87 QQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSK 152 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 358888999988888888877765321 100 122244557899999999999999988865543
No 15
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=30.16 E-value=45 Score=27.55 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc-CCC--CchhHHHHHhhhhhhhcchhhhHHHHHHhhc
Q psy4283 122 TFLETIKEIASAIKKLLDAVNEVSGF-IPG--PSNKQALEQRKREFVKFSKRFSNTLKDYFKE 181 (210)
Q Consensus 122 ~FL~tIKeIAsaIK~lLdavN~v~~~-~~~--~~~k~~le~~KreFV~ySKrFS~TLK~YFkd 181 (210)
.|-+++++|.+.-..|++.++..+.. +.. ...-+.+...||.|-+.++.|-..|-.|=.-
T Consensus 88 ~f~~~l~ei~~~~~~l~~~~~~~~~~PL~~f~~~dlk~~ke~kk~fdk~~~~yd~al~k~~~~ 150 (265)
T 2q12_A 88 QFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRL 150 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 68889999999999999888765432 110 1223455688999999999999888887643
No 16
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=28.91 E-value=1.2e+02 Score=25.64 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q psy4283 123 FLETIKEIASAIKKLLDAVNEVS 145 (210)
Q Consensus 123 FL~tIKeIAsaIK~lLdavN~v~ 145 (210)
....|+..|..|+..|.++..-.
T Consensus 78 l~~~i~~~~~~i~~~Lk~l~~~~ 100 (267)
T 1dn1_B 78 LMSDIKKTANKVRSKLKSIEQSI 100 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677788888888776654
No 17
>2bk6_A Non-heme iron-containing ferritin; DPS (DNA binding protein from starved cells), ferroxidase center, mutagenesis study; 2.19A {Listeria innocua} SCOP: a.25.1.1 PDB: 1qgh_A 2bjy_A 2iy4_A 2bkc_A
Probab=28.53 E-value=36 Score=26.22 Aligned_cols=54 Identities=9% Similarity=0.134 Sum_probs=41.0
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHHH
Q psy4283 21 ILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESILR 74 (210)
Q Consensus 21 vl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslLr 74 (210)
++..+-+....++..+|.++..||...---|.|++..++....-.+.+=++.|+
T Consensus 98 ml~~~l~~~~~~i~~~r~~i~~a~~~~D~~T~dll~~il~~~Ek~~w~L~a~l~ 151 (156)
T 2bk6_A 98 LMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLG 151 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555579999999999999976667888888999876555776666664
No 18
>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal transport; 2.10A {Helicobacter pylori} PDB: 4evd_A 3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A
Probab=28.38 E-value=45 Score=26.23 Aligned_cols=51 Identities=8% Similarity=0.104 Sum_probs=36.6
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchh
Q psy4283 21 ILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNES 71 (210)
Q Consensus 21 vl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~Es 71 (210)
++..+-+....++..+|+++..||+..-=-|.|++..++....-.+-|=++
T Consensus 111 ml~~ll~~~~~~i~~~r~~i~~aee~~D~~T~dll~~il~~~Ek~~WmL~a 161 (164)
T 4eve_A 111 IFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLQA 161 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555579999999999999986666888888998865433444333
No 19
>2cf7_A DPR; peroxide resistance, DPS-family, ferritin-like, ferroxidase, iron-binding; HET: EPE; 1.50A {Streptococcus suis} PDB: 2ux1_A* 2bw1_A* 1umn_A* 2v15_A* 2xjm_A* 2xjn_A* 2xjo_A* 2xkq_A*
Probab=28.28 E-value=36 Score=26.71 Aligned_cols=54 Identities=9% Similarity=0.003 Sum_probs=41.5
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHHH
Q psy4283 21 ILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESILR 74 (210)
Q Consensus 21 vl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslLr 74 (210)
++..+-+....++..+|.++..||...---|.|++..++....-.+.+=++.|.
T Consensus 107 ml~~~l~~~~~~i~~~r~~i~~a~~~~D~~T~dll~~il~~~Ek~~w~L~a~L~ 160 (165)
T 2cf7_A 107 QLARVVEVFRYLAALFQKGFDVSDEEGDSVTNDIFNVAKASIEKHIWMLQAELG 160 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555579999999999999987777888888999876655777777664
No 20
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=28.24 E-value=97 Score=21.30 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhhhhhhhcchhhhHHHHHH
Q psy4283 126 TIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFSKRFSNTLKDY 178 (210)
Q Consensus 126 tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~KreFV~ySKrFS~TLK~Y 178 (210)
.-.+|-+.+..|-..|+.+..... +....+-.++-.++-.-.++|.+.|.++
T Consensus 23 ~~~~i~~~l~~L~~~~~~l~~~W~-G~a~~aF~~~~~~~~~~~~~~~~~L~~i 74 (98)
T 3gwk_C 23 GSQQVTEVLNLLTQEQAVIDENWD-GSTFDSFEAQFNELSPKITEFAQLLEDI 74 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBC-SSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444 3344555555556666666666666655
No 21
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=27.89 E-value=1.7e+02 Score=21.15 Aligned_cols=57 Identities=19% Similarity=0.348 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcC---CCCchhHHHHHhhhhhhhcchhhhHHHHHHhh
Q psy4283 122 TFLETIKEIASAIKKLLDAVNEVSGFI---PGPSNKQALEQRKREFVKFSKRFSNTLKDYFK 180 (210)
Q Consensus 122 ~FL~tIKeIAsaIK~lLdavN~v~~~~---~~~~~k~~le~~KreFV~ySKrFS~TLK~YFk 180 (210)
.....|+..|..||..|.++-.-.... .+++. .+--++--.-.-+++|.+.+.+|-.
T Consensus 54 ~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~--~~Rir~~q~~~L~~kf~e~m~~y~~ 113 (127)
T 1ez3_A 54 ELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSA--DLRIRKTQHSTLSRKFVEVMSEYNA 113 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999886543322 21221 2333445555567788888888743
No 22
>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal transport; 2.50A {Treponema pallidum} SCOP: a.25.1.1
Probab=27.78 E-value=48 Score=25.57 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=38.3
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHH
Q psy4283 21 ILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESIL 73 (210)
Q Consensus 21 vl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslL 73 (210)
++..+-+....++..+|.++..||...--.|.|++..|+....-.+.+=++.|
T Consensus 102 ml~~~l~~~~~~i~~~r~~i~~a~~~~D~~T~dll~~il~~~Ek~~w~L~a~l 154 (156)
T 2fjc_A 102 ALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATL 154 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444445557999999999999998666788888899886544455555444
No 23
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU genomics, center for structural genomics of infectious DISE; 1.67A {Vibrio cholerae o1 biovar el tor}
Probab=27.34 E-value=45 Score=25.78 Aligned_cols=53 Identities=15% Similarity=0.023 Sum_probs=37.2
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHH
Q psy4283 21 ILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESIL 73 (210)
Q Consensus 21 vl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslL 73 (210)
++..+-+....++..+|+++..||...---|.|++..++....-.+-|=++.|
T Consensus 106 ml~~ll~~~~~~i~~~r~~i~~ae~~~D~~T~dll~~~l~~~Ek~~WmL~a~l 158 (159)
T 3iq1_A 106 SMQGLVDGFSILLHQQRDILELAGETGDEGTSALMSDYIREQEKLVWMLNAWL 158 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444445557999999999999998555688888899886544444444443
No 24
>2yjk_A AFP, DPS; metal-binding protein, iron uptake, ferritin fold; 2.00A {Microbacterium arborescens} PDB: 2yjj_A
Probab=26.55 E-value=49 Score=25.72 Aligned_cols=52 Identities=15% Similarity=-0.024 Sum_probs=37.5
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHH
Q psy4283 21 ILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESIL 73 (210)
Q Consensus 21 vl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslL 73 (210)
++..+-+....++..+|+++ .||...---|.|++..++....-.+.+=++.|
T Consensus 108 ml~~~l~~~~~~i~~~r~~i-~a~~~~D~~T~dll~~il~~~Ek~~w~L~a~l 159 (161)
T 2yjk_A 108 EIKAIVSDIDAALVDLQAAI-DGLDEVDLTSQDVAIEIKRGVDKDRWFLLAHL 159 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhcccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555557999999999 99998666788888899887544455555544
No 25
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=26.37 E-value=2e+02 Score=24.14 Aligned_cols=17 Identities=12% Similarity=0.444 Sum_probs=12.7
Q ss_pred hhhhcchhhhHHHHHHh
Q psy4283 163 EFVKFSKRFSNTLKDYF 179 (210)
Q Consensus 163 eFV~ySKrFS~TLK~YF 179 (210)
.|.+|+.-+|.-|.+|-
T Consensus 95 ~~yrY~~~~s~~lQE~V 111 (240)
T 1j1j_A 95 QYYRFHEHWRFVLQRLV 111 (240)
T ss_dssp GHHHHGGGTHHHHHHHH
T ss_pred hHHHHhccccHHHHHHH
Confidence 47788888888777773
No 26
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4
Probab=26.13 E-value=83 Score=25.21 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhhhhhhhcchhhhHHHHHHhhc
Q psy4283 120 RKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFSKRFSNTLKDYFKE 181 (210)
Q Consensus 120 R~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~KreFV~ySKrFS~TLK~YFkd 181 (210)
+.-|+..+++|=++=+.+++|+....+...+|.-|+++++...|--.... .|.+-|..
T Consensus 7 ~dlf~~~L~D~y~aE~q~~~al~~~~~~a~~p~Lk~~l~~h~~eT~~qi~----rLe~i~~~ 64 (166)
T 2gs4_A 7 EDVFIHLLSDTYSAEKQLTRALAKLARATSNEKLSQAFHAHLEETHGQIE----RIDQVVES 64 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHH----HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 45799999999999999999999999988888888898888777655554 46666654
No 27
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=25.94 E-value=75 Score=23.51 Aligned_cols=53 Identities=21% Similarity=0.442 Sum_probs=40.2
Q ss_pred hhHHHhhccCCCCccchhcccCChHHHHHHHHhHHHHHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4283 70 ESILRLQGAASDVDAVEYKLNRSEDAFQELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEV 144 (210)
Q Consensus 70 EslLr~a~~~~~~~~~e~~~~~~e~~f~el~~kA~~LK~iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v 144 (210)
|-+|+||.- ...||.. .||==--+|+..+ -.|++.|-+=-+..|+..||+|..
T Consensus 22 ~~lL~~Aki----Sl~DyIm----------------iKRGS~DmPe~L~--~~~~~QideeV~~LKe~IdaLNK~ 74 (83)
T 1zke_A 22 EMLLKLANL----SLGDFIE----------------IKRGSMDMPKGVN--EAFFTQLSEEVERLKELINALNKI 74 (83)
T ss_dssp HHHHHHHTC----CHHHHHH----------------HHTTSSCCCTTCC--GGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh----hhHHHhh----------------eeccCccCccccC--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888887 5666654 3443445777765 579999999999999999999987
No 28
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=25.79 E-value=1.1e+02 Score=20.70 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=18.7
Q ss_pred cCCCCchhHHHHHhhhhhhhcchhhhHHHHHH
Q psy4283 147 FIPGPSNKQALEQRKREFVKFSKRFSNTLKDY 178 (210)
Q Consensus 147 ~~~~~~~k~~le~~KreFV~ySKrFS~TLK~Y 178 (210)
... +....+-.+.-.++..-.+++.+.|.++
T Consensus 45 ~W~-G~a~~af~~~~~~~~~~~~~~~~~L~~i 75 (99)
T 3zbh_A 45 IWE-GASSEAFIQQYQELRPSFEKMAVLLNEV 75 (99)
T ss_dssp HCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcc-ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 4455566666666666666666666655
No 29
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical bundle, lipid binding; 1.8A {Gallus gallus} SCOP: a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A
Probab=25.59 E-value=2.9e+02 Score=22.94 Aligned_cols=83 Identities=22% Similarity=0.294 Sum_probs=56.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhhhhhhhcchh---hhHHHHHH--hhcC--Ccchhh--
Q psy4283 118 TDRKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFSKR---FSNTLKDY--FKEG--QANSVY-- 188 (210)
Q Consensus 118 ~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~KreFV~ySKr---FS~TLK~Y--Fkd~--~~~~Vf-- 188 (210)
.+.+.|+..=|.||++..+|..-+-++....+++..|..|- -|+-| ||.-||=- +|.. ...++|
T Consensus 64 ~t~~dlI~~Ak~iAe~~~~l~k~ar~iA~qc~D~~~k~~Ll-------~~~~rI~t~~~QLkIls~VKA~~~g~~~~~~~ 136 (188)
T 1qkr_A 64 GNKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLL-------QVCERIPTISTQLKILSTVKATMLGRTNISDE 136 (188)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-------HHHTTHHHHHHHHHHHHHHHHHHTTCTTSCHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH-------HHHHhhhHHHHHHHHHHHhccccccccccccc
Confidence 77789999999999999999999999988888755544443 33333 34444433 2221 112333
Q ss_pred --hhH-HHHHHHHHHHHHHHhh
Q psy4283 189 --VSA-LYLIHQTNMIMVTVKS 207 (210)
Q Consensus 189 --~SA-n~Li~qTn~il~t~k~ 207 (210)
.|| +.||+.+=.+|.+|+.
T Consensus 137 ~~~~a~e~LIq~AkNLM~aV~~ 158 (188)
T 1qkr_A 137 ESEQATEMLVHNAQNLMQSVKE 158 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 455 5999999888888775
No 30
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=25.53 E-value=39 Score=22.99 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCCcccchhHHHhhccCCCCccchhcccCChHHHHHHHHhHHHHHHHhccCCcc
Q psy4283 52 YDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYKLNRSEDAFQELNKKSCALKKILSRIPDE 116 (210)
Q Consensus 52 ~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~~~~~e~~f~el~~kA~~LK~iLSrIPde 116 (210)
.++|..+.+..|++....+-+|--.|= +| ++--..|.+|..+ ++||+|
T Consensus 8 ~~mv~~~s~~Tgmn~~~s~~cL~~~~W-------d~--~~A~~~F~~l~~~--------~~IP~e 55 (59)
T 1oai_A 8 QEMLQAFSTQSGMNLEWSQKCLQDNNW-------DY--TRSAQAFTHLKAK--------GEIPEV 55 (59)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTT-------CH--HHHHHHHHHHHHT--------TCSCGG
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCC-------CH--HHHHHHHHHHHHc--------CCCCHH
Confidence 578999999999999999999966555 33 2234456666544 568875
No 31
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp}
Probab=25.46 E-value=46 Score=25.44 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=43.0
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHHHh
Q psy4283 21 ILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESILRL 75 (210)
Q Consensus 21 vl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslLr~ 75 (210)
+|..+-+-...++..+|.++..|+...---|.+|+..++....-.+.+=++.|+.
T Consensus 95 ~l~~~l~~e~~~~~~~~~~i~~a~~~~D~~T~~ll~~~l~e~Ek~~w~L~a~l~~ 149 (156)
T 2d5k_A 95 MVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLSL 149 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4445555555799999999999999887889999999999876567777777754
No 32
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=25.03 E-value=79 Score=25.55 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhhhhhhhcchhhhHHHHHHhh
Q psy4283 120 RKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFSKRFSNTLKDYFK 180 (210)
Q Consensus 120 R~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~KreFV~ySKrFS~TLK~YFk 180 (210)
+.-|+..+++|=++=+.+++|+....+...+|.-|+++++...|--....| |.+-|.
T Consensus 14 ~dlf~~~L~Diy~aE~q~~~aL~~~~~~a~~p~Lk~~l~~H~~eT~~qi~r----Le~i~~ 70 (173)
T 2gyq_A 14 EDLLLHGLRDIYYAEQQITKALPKMIEQATNRDLSQGLTSHLEETQKQIER----LDQVFK 70 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 357999999999999999999999999888888899998888776665554 555553
No 33
>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding protein, DPS, dodecameric, ferritin; 2.0A {Bacillus subtilis}
Probab=24.90 E-value=51 Score=25.31 Aligned_cols=52 Identities=21% Similarity=0.205 Sum_probs=37.2
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhH
Q psy4283 21 ILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESI 72 (210)
Q Consensus 21 vl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~Esl 72 (210)
++..+-+....++..+|.++..||...---|.|++..++....-.+.+=++.
T Consensus 100 ml~~~l~~~~~~i~~~r~~i~~a~~~~D~~T~dll~~il~~~Ek~~w~L~a~ 151 (153)
T 2chp_A 100 MVQALVNDYKQISSESKFVIGLAEENQDNATADLFVGLIEEVEKQVWMLSSY 151 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555799999999999999877778888888888654334444433
No 34
>3gor_A Putative metal-dependent hydrolase; structural genomics, DINB superfamily, PSI-2, protein structure initiative; 2.51A {Geobacillus stearothermophilus}
Probab=24.50 E-value=1e+02 Score=22.08 Aligned_cols=112 Identities=12% Similarity=0.074 Sum_probs=66.4
Q ss_pred HHHHHHhHHHHHHHhccCCccccchH------HHHHHHHHHHHHHHHHHHHHhhhhhc----CCC---CchhHHHHHhhh
Q psy4283 96 FQELNKKSCALKKILSRIPDEITDRK------TFLETIKEIASAIKKLLDAVNEVSGF----IPG---PSNKQALEQRKR 162 (210)
Q Consensus 96 f~el~~kA~~LK~iLSrIPdei~dR~------~FL~tIKeIAsaIK~lLdavN~v~~~----~~~---~~~k~~le~~Kr 162 (210)
++.+..-...+.++|..||+|--|.+ ++-+++.-||.+..-.+..+..--.. ... .+-.+.++....
T Consensus 11 l~~~~~~r~~t~~~l~~l~ee~l~~~p~~~~~Si~~l~~Hi~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~ 90 (157)
T 3gor_A 11 VQYFLSHRHVTMELIHKIDEAHYDYKPTPTSMTAKQLATHMLFSFYNFANTAKHGDPSLFRQKIEEPETNLAKLAETYTE 90 (157)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGTTCCSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCGGGGGCCCCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhCCCCCCCCcCHHHHHHHHHHHHHHHHHHhhccccccccccccCcHHHHHHHHHHHHH
Confidence 35666666889999999999977554 89999999999988888777542111 111 233344555555
Q ss_pred hhhhcchhhhHH-HHH---Hh-hcCCcch----hhhhHHHHHHHHHHHHHHHhh
Q psy4283 163 EFVKFSKRFSNT-LKD---YF-KEGQANS----VYVSALYLIHQTNMIMVTVKS 207 (210)
Q Consensus 163 eFV~ySKrFS~T-LK~---YF-kd~~~~~----Vf~SAn~Li~qTn~il~t~k~ 207 (210)
.+..+-+.+++. |.+ +. -.|.... +..-++.-+|+.=+|..-+|.
T Consensus 91 ~~~~~l~~l~~~~l~~~~~~~~~~g~~~t~~~~l~~~~~H~~hHrGQi~~~lR~ 144 (157)
T 3gor_A 91 KTRQLIESMSDDDFDRTLDLTAIFGTQMSTAQFLQLAMDHEIHHKGQLFVYVRG 144 (157)
T ss_dssp HHHHHHHTCCTTGGGCEEECHHHHSSEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHhccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554431 211 11 1122222 233456666777777666654
No 35
>2wlu_A DPS-like peroxide resistance protein; DNA-binding, oxidoreductase; 1.94A {Streptococcus pyogenes} PDB: 2wla_A
Probab=24.39 E-value=46 Score=26.37 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=41.1
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHHH
Q psy4283 21 ILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESILR 74 (210)
Q Consensus 21 vl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslLr 74 (210)
++..+-+....++..+|.++..||...---|.|++..++....-.+.+=++.|+
T Consensus 117 ml~~~l~~~~~~i~~~r~~i~~ae~~~D~~T~dll~~il~~~Ek~~w~L~a~L~ 170 (175)
T 2wlu_A 117 HLARLVEVYLYLSSLYQVGLDITDEEGDAGTNDLFTAAKTEAEKTIWMLQAERG 170 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555555579999999999999986667888888999877655777676664
No 36
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=23.71 E-value=1.2e+02 Score=21.80 Aligned_cols=20 Identities=15% Similarity=0.481 Sum_probs=15.0
Q ss_pred hcCCCchHHHHHHHHHhcCCC
Q psy4283 45 TANPGFAYDFVVGIMRQGELS 65 (210)
Q Consensus 45 ~~~PGft~dfV~~IL~r~~~~ 65 (210)
..|||++.+++ .+|++.++.
T Consensus 7 ~~~p~Lse~~~-~~L~~~~I~ 26 (83)
T 2kz3_A 7 GLCPGLTEEMI-QLLRSHRIK 26 (83)
T ss_dssp TSSTTCCHHHH-HHHHHTTCC
T ss_pred ccCCCCCHHHH-HHHHHCCCC
Confidence 46899999999 556666554
No 37
>1o9r_A Agrobacterium tumefaciens DPS; iron-binding protein, DNA protection from oxidative damage, DNA-binding, iron- binding protein; 1.45A {Agrobacterium tumefaciens} SCOP: a.25.1.1 PDB: 3ge4_A*
Probab=23.55 E-value=45 Score=25.83 Aligned_cols=53 Identities=19% Similarity=0.183 Sum_probs=38.2
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHH
Q psy4283 21 ILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESIL 73 (210)
Q Consensus 21 vl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslL 73 (210)
++..+-+....++..+|.++..||...---|.|++..++....-.+.+=++.|
T Consensus 106 ml~~~l~~~~~~i~~~r~~i~~a~~~~D~~T~dll~~il~~~Ek~~w~L~a~l 158 (162)
T 1o9r_A 106 HLDALIERYGEVANMIRKAIDDSDEAGDPTTADIFTAASRDLDKSLWFLEAHV 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445455557999999999999999666688888889886544455555544
No 38
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=23.46 E-value=1.3e+02 Score=25.98 Aligned_cols=44 Identities=25% Similarity=0.297 Sum_probs=28.3
Q ss_pred cchhhhHhHHHHHHhhhcH------HHHHHHHHHHHHHHhcCCCchHHHH
Q psy4283 12 LILPVLFRPILSQLEKRDV------QASQTLRAALSRTETANPGFAYDFV 55 (210)
Q Consensus 12 ~~L~~li~Pvl~eLe~kd~------~A~qtLRaAf~kAE~~~PGft~dfV 55 (210)
.+|..++.-|++.|++.+| .+...+.+|+.-+=.+.-+|.+-|-
T Consensus 13 ~~~~~~~~~ii~~mk~~~P~~e~lv~~g~ky~~al~~~~~a~~af~Da~q 62 (253)
T 2d1l_A 13 SALGGLFQTIISDMKGSYPVWEDFINKAGKLQSQLRTTVVAAAAFLDAFQ 62 (253)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777776 3666666666666666555555443
No 39
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=23.46 E-value=1.2e+02 Score=20.56 Aligned_cols=25 Identities=4% Similarity=0.037 Sum_probs=10.8
Q ss_pred hhHHHHHhhhhhhhcchhhhHHHHH
Q psy4283 153 NKQALEQRKREFVKFSKRFSNTLKD 177 (210)
Q Consensus 153 ~k~~le~~KreFV~ySKrFS~TLK~ 177 (210)
..++-.++-.++..--++|.+.|.+
T Consensus 50 a~~af~~~~~~~~~~~~~~~~~L~~ 74 (93)
T 4ioe_A 50 TQAKFRGEFIQSKQAMQQYIPILEG 74 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 40
>2c2j_A DNA-binding stress response protein; DNA-binding protein, DPS; 2.05A {Deinococcus radiodurans} PDB: 2c6r_A
Probab=23.33 E-value=51 Score=27.41 Aligned_cols=68 Identities=7% Similarity=0.053 Sum_probs=48.6
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCccchhcccCC
Q psy4283 21 ILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVDAVEYKLNRS 92 (210)
Q Consensus 21 vl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~~~e~~~~~~ 92 (210)
++..+-+....++..+|+++..||.. ---|.|++..|+....-.+.+=++.|+-.... +.--+.+++.
T Consensus 136 mL~~ll~~e~~~i~~~re~i~~aee~-D~~T~dLl~~il~~~EkhiW~L~a~L~~~~~~---~~~~~~~~~~ 203 (211)
T 2c2j_A 136 VIQFFTYQYETVGQRIHQRVGDVEKV-DPTTANLLQEVEHIIEKYQWQMRAFLQNTPTD---PNTGFDINNG 203 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHHHHGGGCCBTTB---CCCCGGGTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC---CCCccccCCC
Confidence 44445555557999999999999999 66688888899998766688888888744332 2234555443
No 41
>2z90_A Starvation-inducible DNA-binding protein or FINE tangled PILI major subunit; quarternary assembly, ferroxidation; 2.40A {Mycobacterium smegmatis str}
Probab=23.30 E-value=37 Score=26.45 Aligned_cols=51 Identities=14% Similarity=0.136 Sum_probs=35.9
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhH
Q psy4283 21 ILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESI 72 (210)
Q Consensus 21 vl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~Esl 72 (210)
++..+-+....++..+|.++..||.. ---|.|++..|+....-.+.+=++.
T Consensus 107 ml~~~l~~~~~~i~~~r~~i~~a~~~-D~~T~dll~~il~~~Ek~~w~L~a~ 157 (161)
T 2z90_A 107 VVDLITTRINATVDTIRRVHDAVDAE-DPSTADLLHGLIDGLEKQAWLIRSE 157 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445557999999999999999 6668888888888654334444433
No 42
>2v7k_A PRNB; IDO, TDO, biosynthetic protein; HET: HEM DTR; 1.70A {Pseudomonas fluorescens} PDB: 2v7j_A* 2v7i_A* 2v7l_A* 2v7m_A* 2x66_A* 2x67_A* 2x68_A*
Probab=23.22 E-value=96 Score=27.98 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=29.3
Q ss_pred HhccCCccccchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy4283 109 ILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSG 146 (210)
Q Consensus 109 iLSrIPdei~dR~~FL~tIKeIAsaIK~lLdavN~v~~ 146 (210)
.+.-+| .|+..+.+..++||.+|+++.+....+..
T Consensus 160 ai~a~~---~d~~~~~~~L~~l~~~l~~l~~~l~rm~e 194 (361)
T 2v7k_A 160 ELFDVS---LRSPEFAQRSDELEAYLQKMVESIVYAYR 194 (361)
T ss_dssp HHHTSC---TTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677 78899999999999999999988777664
No 43
>2c2u_A DPS, DNA-binding stress response protein; DNA-binding protein, iron; 1.1A {Deinococcus radiodurans} PDB: 2c2f_A 2f7n_A
Probab=23.01 E-value=56 Score=27.00 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=41.7
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHHH
Q psy4283 21 ILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESILR 74 (210)
Q Consensus 21 vl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslLr 74 (210)
++..+-+....++..+|.++..||...--.|.|++..|+....-.+.+=++.|+
T Consensus 149 mL~~ll~~e~~~i~~~re~i~~aee~~D~~T~dLl~~il~~~EkhiW~L~a~L~ 202 (207)
T 2c2u_A 149 QVADLVQDLSRVGKGYRDDSQACDEANDPVTADMYNGYAATIDKIRWMLQAIMD 202 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445555555579999999999999997777888889999876655777777664
No 44
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus}
Probab=22.50 E-value=55 Score=24.88 Aligned_cols=54 Identities=6% Similarity=-0.026 Sum_probs=41.5
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHHH
Q psy4283 21 ILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESILR 74 (210)
Q Consensus 21 vl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslLr 74 (210)
+|..+-+....++..+|.++..|+...---|.+|+..++....-.+.+=++.|+
T Consensus 98 ~l~~~l~~e~~~~~~~~~~i~~a~~~~D~~T~~ll~~~l~~~Ek~~w~l~~~l~ 151 (158)
T 2c41_A 98 MIEEAIANHELIITEMHQDAEIATEAGDIGTADLYTRLVQTHQKHRWFLKEFLA 151 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444455579999999999999997788999999999876555666666664
No 45
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1
Probab=22.25 E-value=57 Score=24.18 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=38.6
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhH
Q psy4283 20 PILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESI 72 (210)
Q Consensus 20 Pvl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~Esl 72 (210)
-+|..+-+....++..+|.++..|+...---|.+|+..++....-.+.+=++.
T Consensus 92 e~l~~~l~~e~~~~~~~~~~i~~a~~~~D~~T~~ll~~~l~e~ek~~w~l~~~ 144 (146)
T 1jig_A 92 EMVQTLVNDYSALIQELKEGMEVAGEAGDATSADMLLAIHTTLEQHVWMLSAF 144 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555799999999999999888889999999988754444444443
No 46
>2yw6_A DNA protection during starvation protein; DNA-binding protein, quarternary assembly, ferroxidation, oxidoreductase; HET: DNA; 2.53A {Mycobacterium smegmatis} SCOP: a.25.1.1 PDB: 1vei_A 1vel_A 1veq_A 1uvh_A* 2yw7_A
Probab=22.22 E-value=51 Score=26.35 Aligned_cols=53 Identities=13% Similarity=0.045 Sum_probs=41.2
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHHH
Q psy4283 21 ILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESILR 74 (210)
Q Consensus 21 vl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslLr 74 (210)
++..+-+....++..+|.++..||.. ---|.|++..|+....-.+.+=++.|+
T Consensus 105 ml~~~l~~~~~~i~~~r~~i~~ae~~-D~~T~dll~~il~~~Ek~~w~L~a~L~ 157 (183)
T 2yw6_A 105 HLAALDLVYNGVIEDTRKSIEKLEDL-DLVSQDLLIAHAGELEKFQWFVRAHLE 157 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444557999999999999999 666888888999987666888888875
No 47
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=22.20 E-value=36 Score=26.55 Aligned_cols=23 Identities=26% Similarity=0.627 Sum_probs=18.6
Q ss_pred CccccchHHHHHHHHHHHHHHHH
Q psy4283 114 PDEITDRKTFLETIKEIASAIKK 136 (210)
Q Consensus 114 Pdei~dR~~FL~tIKeIAsaIK~ 136 (210)
|+||+.|+.|+..++.--..||+
T Consensus 104 ~~Ei~~Rr~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 104 AGDLQERKVFVERMREAVQEMKD 126 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999986666654
No 48
>2rld_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.29.16.1
Probab=22.04 E-value=75 Score=23.81 Aligned_cols=93 Identities=25% Similarity=0.264 Sum_probs=61.5
Q ss_pred ccchhhhHhHHHHHHhh---hcHHHHHHHHHHHHH----HHhcCCCchHHHHHHHHHhcCCCcccchhHHHhhccCCCCc
Q psy4283 11 SLILPVLFRPILSQLEK---RDVQASQTLRAALSR----TETANPGFAYDFVVGIMRQGELSVNMNESILRLQGAASDVD 83 (210)
Q Consensus 11 S~~L~~li~Pvl~eLe~---kd~~A~qtLRaAf~k----AE~~~PGft~dfV~~IL~r~~~~vn~~EslLr~a~~~~~~~ 83 (210)
|.-|..-++++...+.+ ...-+-|-+|+|.+- ||....+-..||+..|-- +.-+.+=.+..|+++-..
T Consensus 15 a~~~a~~i~~l~~~~p~~~e~~~L~~Qi~Rsa~SI~aNIaEg~~r~s~~df~~~L~i-A~~s~~E~~~~L~l~~~~---- 89 (121)
T 2rld_A 15 SLEFAVRIVNLYKFLVNEQKEFVMSKQILRSGTSIGANIREAEQAQSRADFINKLNI-ALKEANETEYWLELLIRT---- 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCSHHHHHHHHHHHHHHHHHHHTC--CHHHHHHHHHH-HHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHCchhHHHhhHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH-HHHHHHHHHHHHHHHHHc----
Confidence 45567778888888854 344588888888765 555555556799855543 333456677888888662
Q ss_pred cchhcccCChHHHHHHHHhHHHHHHHhccC
Q psy4283 84 AVEYKLNRSEDAFQELNKKSCALKKILSRI 113 (210)
Q Consensus 84 ~~e~~~~~~e~~f~el~~kA~~LK~iLSrI 113 (210)
.|. +++.|.+|...+..+.++|..+
T Consensus 90 --~yi---~~~~~~~l~~~~~ei~kmL~~~ 114 (121)
T 2rld_A 90 --EYI---TREQYESINNDSTEINKLLISI 114 (121)
T ss_dssp --TSS---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCC---CHHHHHHHHHHHHHHHHHHHHH
Confidence 342 2557888888888888777643
No 49
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B
Probab=22.02 E-value=1.1e+02 Score=27.67 Aligned_cols=57 Identities=26% Similarity=0.262 Sum_probs=40.2
Q ss_pred cCCc-cccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhhhhhhhcchhhhHHHH
Q psy4283 112 RIPD-EITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFSKRFSNTLK 176 (210)
Q Consensus 112 rIPd-ei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~KreFV~ySKrFS~TLK 176 (210)
+.|| .-..|..-++-.|++|..+++||.+|-.+... |++ +.|...-.||||-++-+-
T Consensus 263 ~~~~~~~e~r~~~~~~~k~~a~~~~~LL~~v~~~~~~-P~~-------~~k~~L~~~Sr~VA~aVt 320 (332)
T 3dyj_A 263 FHPEVAPDVRLRALHYGRECANGYLELLDHVLLTLQK-PNP-------DLKQQLTGHSKRVAGSVT 320 (332)
T ss_dssp TSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CCH-------HHHHHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCH-------HHHHHHHHHHHHHHHHHH
Confidence 3455 34457778999999999999999999877553 223 345556677887766543
No 50
>2xgw_A Peroxide resistance protein; metal binding protein; 2.10A {Streptococcus pyogenes}
Probab=21.95 E-value=54 Score=26.89 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=41.8
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcCCCcccchhHHHh
Q psy4283 21 ILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGELSVNMNESILRL 75 (210)
Q Consensus 21 vl~eLe~kd~~A~qtLRaAf~kAE~~~PGft~dfV~~IL~r~~~~vn~~EslLr~ 75 (210)
++..+-+....++..+|+++..||+..--.|.|++..++....-.+.+=++.|+.
T Consensus 133 mL~~ll~~e~~~i~~~re~i~~aee~~D~~T~dll~~il~~~Ekh~w~L~a~L~~ 187 (199)
T 2xgw_A 133 HLARLVEVYLYLSSLYQVGLDITDEEGDAGTNDLFTAAKTEAEKTIWMLQAERGQ 187 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555799999999999999876678888889998776567777777654
No 51
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=21.84 E-value=32 Score=30.03 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=18.0
Q ss_pred HHHHHhHHHHHHHhccCCcccc
Q psy4283 97 QELNKKSCALKKILSRIPDEIT 118 (210)
Q Consensus 97 ~el~~kA~~LK~iLSrIPdei~ 118 (210)
..|..--.+|=++||.|||++-
T Consensus 227 ~~~~~~y~~~~~vls~ipd~vy 248 (249)
T 3skq_A 227 DLLDLYYDGILQVLSSIPDPVY 248 (249)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTT
T ss_pred hhHHHHHHHHHHHHccCCcccc
Confidence 4556666899999999999974
No 52
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=21.81 E-value=46 Score=24.05 Aligned_cols=14 Identities=50% Similarity=0.551 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHH
Q psy4283 128 KEIASAIKKLLDAV 141 (210)
Q Consensus 128 KeIAsaIK~lLdav 141 (210)
|+||..||+-||.-
T Consensus 36 k~iA~~IK~~fD~k 49 (89)
T 3rjs_A 36 KDIAAFIKKEFDRK 49 (89)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 89999999999964
No 53
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=20.80 E-value=2e+02 Score=20.87 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=42.6
Q ss_pred hHHHHHHHhccCCccccchH----HHH------HHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhhhhhhhcchhh
Q psy4283 102 KSCALKKILSRIPDEITDRK----TFL------ETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFSKRF 171 (210)
Q Consensus 102 kA~~LK~iLSrIPdei~dR~----~FL------~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~KreFV~ySKrF 171 (210)
....|...|+.+|+. .|. .|. -|++|||....-=..+|-.. ..+|+..-|+...
T Consensus 9 l~~~l~~aL~~Lp~r--eR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~--------~~rAlkkLR~~~~------ 72 (99)
T 3t72_q 9 LRAATHDVLAGLTAR--EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQI--------EAKALRKLRHPSR------ 72 (99)
T ss_pred HHHHHHHHHHcCCHH--HHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHH--------HHHHHHHHHHHHH------
Confidence 345688889999985 333 343 48999998765444444333 3467766665544
Q ss_pred hHHHHHHhhcCC
Q psy4283 172 SNTLKDYFKEGQ 183 (210)
Q Consensus 172 S~TLK~YFkd~~ 183 (210)
++.|++|..+-.
T Consensus 73 ~~~l~~~~~~~~ 84 (99)
T 3t72_q 73 SEVLRSGSSGSG 84 (99)
T ss_pred HHHHHHHHHhcC
Confidence 578899988743
No 54
>2ibf_B Invasin IPAA, 70 kDa antigen; cell adhesion, structural protein; 3.20A {Shigella flexneri} PDB: 2hsq_B
Probab=20.65 E-value=85 Score=18.36 Aligned_cols=15 Identities=53% Similarity=0.700 Sum_probs=11.0
Q ss_pred HhHHHHHHHhccCCc
Q psy4283 101 KKSCALKKILSRIPD 115 (210)
Q Consensus 101 ~kA~~LK~iLSrIPd 115 (210)
+-+.+|-++||+|.|
T Consensus 10 evssalskvlskidd 24 (26)
T 2ibf_B 10 EVSSALSKVLSKIDD 24 (26)
T ss_dssp HHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhhcc
Confidence 445778888888876
No 55
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=20.63 E-value=66 Score=21.97 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCchHHHHHHHHHhcCCCccc
Q psy4283 39 ALSRTETANPGFAYDFVVGIMRQGELSVNM 68 (210)
Q Consensus 39 Af~kAE~~~PGft~dfV~~IL~r~~~~vn~ 68 (210)
-+.+|+.--||=+-+.|..=|++.+++||+
T Consensus 12 li~q~q~VLqgksR~vIirELqrTnLdVN~ 41 (53)
T 2qho_B 12 LISQAQVVLQGKSRSVIIRELQRTNLDVNL 41 (53)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhCccHHH
Confidence 367888899999999999999999988876
No 56
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 4e17_A 4e18_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A ...
Probab=20.48 E-value=4e+02 Score=22.68 Aligned_cols=92 Identities=5% Similarity=0.124 Sum_probs=66.5
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchhHHHHHhhhhhhhcchhhhHHHHHHhhc-----CCcchhhh
Q psy4283 115 DEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFSKRFSNTLKDYFKE-----GQANSVYV 189 (210)
Q Consensus 115 dei~dR~~FL~tIKeIAsaIK~lLdavN~v~~~~~~~~~k~~le~~KreFV~ySKrFS~TLK~YFkd-----~~~~~Vf~ 189 (210)
..+++-..|.+.+|+....+-+|...++..-.-+.++.+|..|..-.---=+.+--...-.|.|++. ....+.=.
T Consensus 149 ~~~~~~~el~~~~~~f~~~~~~L~~~~~~Rq~eL~~~~~r~~l~~Ar~~Lk~~~p~L~ta~k~~lrh~~~~~~~~~~a~~ 228 (258)
T 3rf3_A 149 EVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALK 228 (258)
T ss_dssp GGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcHHHHH
Confidence 5778888999999999999999999999987777777777666555444446666777788999996 22223233
Q ss_pred hHHHHHHHHHHHHHHHh
Q psy4283 190 SALYLIHQTNMIMVTVK 206 (210)
Q Consensus 190 SAn~Li~qTn~il~t~k 206 (210)
+-++...|....|..+-
T Consensus 229 nRd~v~~~m~~al~~I~ 245 (258)
T 3rf3_A 229 NRNFTVEKMSAEINEII 245 (258)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44677777766665543
Done!