RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4283
(210 letters)
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization,
four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo
sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Length = 213
Score = 227 bits (580), Expect = 3e-76
Identities = 98/204 (48%), Positives = 140/204 (68%), Gaps = 5/204 (2%)
Query: 4 GEESPVTSLILPVLFRPILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGIMRQGE 63
E + + S+ L + P+ ++LE+ ++ A+QTLRAA + E NPG D ++ I+ +
Sbjct: 5 AETTSMVSMPLYAVMYPVFNELERVNLSAAQTLRAAFIKAEKENPGLTQDIIMKILEKKS 64
Query: 64 LSVNMNESILRLQGAASDVDAVEYKLNRSEDAFQELNKKSCALKKILSRIPDEITDRKTF 123
+ VN ES+LR+ + EY + R E FQ+LN+K+ ALK+ILS+IPDEI DR F
Sbjct: 65 VEVNFTESLLRMAADDVE----EYMIERPEPEFQDLNEKARALKQILSKIPDEINDRVRF 120
Query: 124 LETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFSKRFSNTLKDYFKEGQ 183
L+TIK+IASAIK+LLD VN V N++ALE +K+EFVK+SK FS+TLK YFK+G+
Sbjct: 121 LQTIKDIASAIKELLDTVNNVFKKYQ-YQNRRALEHQKKEFVKYSKSFSDTLKTYFKDGK 179
Query: 184 ANSVYVSALYLIHQTNMIMVTVKS 207
A +V+VSA LIHQTN+I+ T K+
Sbjct: 180 AINVFVSANRLIHQTNLILQTFKT 203
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 8e-07
Identities = 34/232 (14%), Positives = 69/232 (29%), Gaps = 74/232 (31%)
Query: 13 ILPVLFRPILSQLEKRDVQASQTLRAALSRTE----------------------TANPGF 50
IL V + + +DVQ ++ LS+ E +
Sbjct: 21 ILSVFEDAFVDNFDCKDVQ--DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 51 AYDFVVGIMRQG-------------ELSVNMNESILRLQGAASDVDAV-EYKLNRSE--- 93
FV ++R + S+ I + +D +Y ++R +
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 94 ---DAFQELNK-------------KSC----ALK--KILSRIPDEI--------TDRKTF 123
A EL K+ K+ ++ +I +T
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 124 LETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFSKRFSNTL 175
LE ++++ I + ++ S +++ R +K SK + N L
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHS--SNIKLRIHSIQAELRRLLK-SKPYENCL 247
Score = 33.3 bits (75), Expect = 0.064
Identities = 29/186 (15%), Positives = 54/186 (29%), Gaps = 51/186 (27%)
Query: 7 SP-VTSLILPVLFRPILSQLEK-RDVQASQ---TLRAALSRTETANPGFAY-DFVVGIMR 60
+P S+I R L+ + + V + + ++L+ E A + +
Sbjct: 326 NPRRLSII-AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--VFP 382
Query: 61 QGELSVNMNESIL-RLQGAASDVDAVEYKLNRSEDAFQELNKKSCALKKILSRIPDEITD 119
S ++ +L + D +L+K S K
Sbjct: 383 P---SAHIPTILLSLIWFDVIKSD--------VMVVVNKLHKYSLVEK-----------Q 420
Query: 120 RKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKREFVKFSKRFSN------ 173
K +I I +K L+ N+ AL + + K F +
Sbjct: 421 PKESTISIPSIYLELKVKLE-------------NEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 174 TLKDYF 179
L YF
Sbjct: 468 YLDQYF 473
Score = 32.9 bits (74), Expect = 0.076
Identities = 29/173 (16%), Positives = 49/173 (28%), Gaps = 50/173 (28%)
Query: 21 ILSQLEKRDVQASQTLR---AALSRTETANPGFAYDFVVGIMRQGELSVNMNESILRLQ- 76
++S ++ Q S R R N FA V R + + + +++L L+
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS---RL-QPYLKLRQALLELRP 149
Query: 77 ----------GA-----ASDV---DAVEYKL------------NRSEDAFQELN------ 100
G+ A DV V+ K+ N E + L
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 101 -KKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKL--LDAV---NEVSGF 147
+ S I I + L + + L L V + F
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.004
Identities = 36/253 (14%), Positives = 73/253 (28%), Gaps = 92/253 (36%)
Query: 1 MTMGEESPVT-SLILPVLFRPILSQLEKRDVQASQTLRAALSRTETANPGFAYDFVVGI- 58
M E+ V L +F+ I ++ + L LS T+ P A ++
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL---LSATQFTQP--AL-TLMEKA 1742
Query: 59 ----MRQ---------------GE----------LSVNMNES---ILRLQGAASDVDAVE 86
++ GE +S+ ES ++ +G AV
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI---ESLVEVVFYRGMTMQ-VAVP 1798
Query: 87 YKLNRSEDAFQELNKKSCALKKILSRIPDEIT---DRKTFLETIKEIASAIKKLLDAVNE 143
D N A+ P + ++ ++ + L++ VN
Sbjct: 1799 ------RDELGRSNYGMIAIN------PGRVAASFSQEALQYVVERVGKRTGWLVEIVNY 1846
Query: 144 --------VSGFIPGPSNKQALEQRKREFVKFSKRFSNTLKDYFKEGQANSVYVSALYLI 195
+G + +AL+ +N L + K + + L
Sbjct: 1847 NVENQQYVAAG------DLRALD-----------TVTNVLN-FIK---LQKIDIIEL--- 1882
Query: 196 HQTNMIMVTVKSK 208
Q ++ + V+
Sbjct: 1883 -QKSLSLEEVEGH 1894
Score = 35.4 bits (81), Expect = 0.012
Identities = 44/205 (21%), Positives = 72/205 (35%), Gaps = 83/205 (40%)
Query: 10 TSLILPVLFRPILSQLEKRDVQASQTLRAALSRTETANPGFAYD---------------F 54
L++P I SQL ++ Q ++ L TE GFA D +
Sbjct: 18 HVLLVPTASFFIASQL--QE-QFNKILPEP---TE----GFAADDEPTTPAELVGKFLGY 67
Query: 55 VVGIMRQGELSVNMNESILR----------LQGAASDVDAVEYKLNRSEDAFQELNKKSC 104
V ++ ++ + +L L+G +D+ A+ KL + D L K
Sbjct: 68 VSSLVEPSKVG--QFDQVLNLCLTEFENCYLEG--NDIHALAAKLLQENDT--TLVKTKE 121
Query: 105 ALK-----KILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQ 159
+K +I+++ P + K+ SA L AV E G + A+
Sbjct: 122 LIKNYITARIMAKRPFD-----------KKSNSA---LFRAVGE------GNAQLVAI-- 159
Query: 160 RKREFVKFSKRF---SNTLKDYFKE 181
F NT DYF+E
Sbjct: 160 -----------FGGQGNT-DDYFEE 172
Score = 30.8 bits (69), Expect = 0.39
Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 35/159 (22%)
Query: 5 EESPVTSL--ILPVLFRPILSQ-LEKRDVQASQTLRAALSRTETANPGFAYD----FVVG 57
E S V +L + + LE D+ L A L + + ++
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIH---ALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 58 IMRQGELSVNMNESILRLQGAASDVDAVEYKL-----NRSEDAFQELNKKSCALKKILSR 112
+ + S L + A + +A + N ++D F+EL R
Sbjct: 130 RIMAKRPFDKKSNSAL-FR-AVGEGNAQLVAIFGGQGN-TDDYFEEL------------R 174
Query: 113 IPDEITDR-KTFLET-IKEIASAIKKLLDAVNEVSGFIP 149
++ + IK A + +L+ +
Sbjct: 175 ---DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 33.5 bits (76), Expect = 0.039
Identities = 15/97 (15%), Positives = 40/97 (41%)
Query: 81 DVDAVEYKLNRSEDAFQELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDA 140
V+AV +L +Q+ +++ L + +R E+ ++T +E E ++
Sbjct: 12 SVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQT 71
Query: 141 VNEVSGFIPGPSNKQALEQRKREFVKFSKRFSNTLKD 177
+ S ++ E+ + + S+R + + +
Sbjct: 72 QEKCSKEYLERFRREGNEKEMQRILLNSERLKSRIAE 108
>3di5_A DINB-like protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2; HET:
MSE; 2.01A {Bacillus cereus atcc 10987}
Length = 168
Score = 31.1 bits (70), Expect = 0.14
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 11/96 (11%)
Query: 93 EDAFQELNKKSCALKKILSRIPDEITDRK------TFLETIKEIASAIKKLLDAVNEVSG 146
E Q ++ + +K+L + DE ++ T I +AI +L
Sbjct: 7 EGFLQSWTYETESTQKMLDVLTDESLSQEIAPGHWTLGRVAWHIVTAIPVILSGTGLKFE 66
Query: 147 FIPGP-----SNKQALEQRKREFVKFSKRFSNTLKD 177
S K + ++ F + + D
Sbjct: 67 GETKDYPVPTSAKTIADGYRKVNTAFVEALQSEWTD 102
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.40
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 12/38 (31%)
Query: 154 KQALEQRKREFVKFSKRFSNTLKDYFKEGQANSVYVSA 191
KQAL K+ +LK Y + A ++ + A
Sbjct: 19 KQAL-----------KKLQASLKLY-ADDSAPALAIKA 44
Score = 28.0 bits (61), Expect = 1.6
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 25/46 (54%)
Query: 101 KKSCALKKILSRI----PDEITDRKTFLETIKEIASAIKKLLDAVN 142
K++ LKK+ + + D A A+ A+
Sbjct: 19 KQA--LKKLQASLKLYADDS--------------APAL-----AIK 43
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 29.5 bits (67), Expect = 0.66
Identities = 8/53 (15%), Positives = 14/53 (26%), Gaps = 10/53 (18%)
Query: 147 FIPGPSN-----KQALEQ-----RKREFVKFSKRFSNTLKDYFKEGQANSVYV 189
F GP + + R EF + +Y K + +
Sbjct: 23 FTVGPVMSSEEVRAIGAEQVPYFRTTEFSSTMLENEKFMLEYAKAPEGSKAVF 75
>2xbu_A Hypoxanthine-guanine phosphoribosyltransferase;
glycosyltransferase, purine salvage, FLIP pepti; HET:
5GP; 1.80A {Saccharomyces cerevisiae} PDB: 2jkz_A*
2jky_A*
Length = 221
Score = 29.0 bits (64), Expect = 1.0
Identities = 23/155 (14%), Positives = 43/155 (27%), Gaps = 26/155 (16%)
Query: 49 GFAYDFVVGIMRQG---------ELSVNMNESILRLQGAASDVDAVEYKLNRSEDAFQEL 99
F D ++ I G L +I S + + + E+ ++
Sbjct: 27 NFKPDLIIAIGGGGFIPARILRTFLKEPGVPTIRIFAIILSLYEDLNSVGSEVEEVGVKV 86
Query: 100 NKKSCAL----------KKILSRIPDEITD-RKTFLETIKEI----ASAIKKLLDAVNEV 144
++ K +L I DE+ D R T + E+ A K +
Sbjct: 87 SRTQWIDYEQCKLDLVGKNVL--IVDEVDDTRTTLHYALSELEKDAAEQAKAKGIDTEKS 144
Query: 145 SGFIPGPSNKQALEQRKREFVKFSKRFSNTLKDYF 179
+++K + N YF
Sbjct: 145 PEMKTNFGIFVLHDKQKPKKADLPAEMLNDKNRYF 179
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein,
multidrug resistanc membrane protein; HET: BOG; 1.80A
{Vibrio cholerae}
Length = 442
Score = 28.4 bits (64), Expect = 1.9
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 20 PILSQLEKRDVQASQTLRAALSRTETA 46
L+ L + +Q S +L A++R + A
Sbjct: 33 AQLNHLIEEALQHSPSLCMAMARLKGA 59
>2ap1_A Putative regulator protein; zinc binding protein, structural
genomics, PSI, protein STRU initiative; 1.90A
{Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Length = 327
Score = 28.0 bits (63), Expect = 2.0
Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 112 RIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGF---IPGPSNKQ 155
R+P T ++ + + +++ IPG +
Sbjct: 52 RVP---TPHTSYSAFLDAVCELVEEADQRFGVKGSVGIGIPGMPETE 95
>1z69_A COG2141, coenzyme F420-dependent N(5),N(10)-
methylenetetrahydromethanopterin reductase; (alpha,
beta)8 barrel, oxidoreductase; HET: F42 1PG; 2.61A
{Methanosarcina barkeri}
Length = 327
Score = 28.1 bits (63), Expect = 2.2
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 94 DAFQELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDA-VNEVSGFIP-GP 151
K + + ++ + + T + IK L V ++ P GP
Sbjct: 252 SQIGAAIAKGDFGALMGGLVTPQMIEAFSICGTPDDCMKRIKDLEAIGVTQIVAGSPIGP 311
Query: 152 SNKQALEQ 159
+ ++A++
Sbjct: 312 AKEKAIKL 319
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 28.1 bits (63), Expect = 2.4
Identities = 8/48 (16%), Positives = 16/48 (33%)
Query: 115 DEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKR 162
++T R T I K+ + +P + A R++
Sbjct: 173 RDLTRRDTQKAHILNNLDNFKQFDKVFPALVAGLPIHMFRTAHNAREK 220
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics,
center for structural genomics of infec diseases, csgid,
transferase; 1.95A {Vibrio vulnificus}
Length = 327
Score = 28.0 bits (63), Expect = 2.4
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 112 RIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSGF---IPGPSNKQ 155
R+P T + ++ IA + K +PG +
Sbjct: 52 RVP---TPTDDYPLLLETIAGLVAKYDQEFACEGKIGLGLPGMEDAD 95
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A
{Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Length = 384
Score = 28.0 bits (63), Expect = 2.5
Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 18/66 (27%)
Query: 134 IKKLLDAVNEVSGFIPGPSN----------KQALEQRKREFVKFSKRFSNTLKDYFKEGQ 183
+ KLL GP+ + + +EFV+ L+ +
Sbjct: 1 MDKLL--------LHVGPTTIKEDVLVAGLENNVGFTSKEFVEALAYSLKGLRYVMGASK 52
Query: 184 ANSVYV 189
+
Sbjct: 53 NYQPLI 58
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 27.8 bits (62), Expect = 2.9
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 31 QASQTLRAALSRTETANPGFAY--DF 54
A +R L R ET PG+ Y D+
Sbjct: 580 TAEAHVRHMLFRKETRWPGYYYRTDY 605
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 27.5 bits (61), Expect = 3.2
Identities = 8/57 (14%), Positives = 19/57 (33%)
Query: 90 NRSEDAFQELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIKKLLDAVNEVSG 146
+S + ++ + I+ I + I+E+ I + D + E
Sbjct: 184 EQSAIFKSKWRHEANTWQNIIQTISNNQPVSTENQAKIRELEHKIALVEDVLKEGHH 240
>2r1f_A Protein YCEG, predicted aminodeoxychorismate lyase; structural
genomics, unknown function, PFAM 02618, PSI-2, PR
structure initiative; 2.21A {Escherichia coli}
Length = 270
Score = 27.2 bits (61), Expect = 3.3
Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 15/95 (15%)
Query: 71 SILRLQGAASDVDAVEYKLNRSEDAFQELNKKSCALKKILSRIPDEITDRKTFLE--TIK 128
S+LR++ S A Y+ + LK + S E +E +
Sbjct: 1 SLLRIEPDLSHFKAGTYRFTPQMTVRE-------MLKLLESG--KEAQFPLRLVEGMRLS 51
Query: 129 EIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKRE 163
+ K L + + + + E
Sbjct: 52 DYL----KQLREAPYIKHTLSDDKYATVAQALELE 82
>1ezw_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel, TIM barrel,
oxidoreductase; 1.65A {Methanopyrus kandleri} SCOP:
c.1.16.3
Length = 349
Score = 27.4 bits (61), Expect = 4.0
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 113 IPDEITDRKTFLETIKEIASAIKKLLDA-VNEVS-GFIPGPSNKQALEQRKRE 163
+ +++ + + + I++LL A V +V G GP ++A+E +E
Sbjct: 290 VDEDMIEAFSIAGDPDTVVDKIEELLKAGVTQVVVGSPIGPDKEKAIELVGQE 342
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 27.3 bits (60), Expect = 4.0
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 31 QASQTLRAALSRTETANPGFAY--DF 54
++ R E+ PGF Y DF
Sbjct: 601 TVRLHMQHIAFREESRYPGFYYRADF 626
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle,
LEFT-handed twist, membrane fusion, vesicle transport,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 26.6 bits (58), Expect = 4.3
Identities = 12/85 (14%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 97 QELNKKSCALKKILSRI---PDEITDRKTFLETIKEIASAIKKLLDAVNEVSGFIPGPSN 153
Q +++ + +K ++S++ D ++ + K+ + + E+ +P P +
Sbjct: 24 QRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGS-LPLPLS 82
Query: 154 KQALEQRKREFVKFSKRFSNTLKDY 178
Q++ + + FS L ++
Sbjct: 83 TSEQRQQRLQKERLMNDFSAALNNF 107
>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel,
antibiotic RES lipoprotein, palmitate, transmemb
transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A
Length = 474
Score = 26.9 bits (60), Expect = 4.9
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 20 PILSQLEKRDVQASQTLRAALSRTETA 46
P L QL ++ ++ LR A E
Sbjct: 47 PQLQQLIGVALENNRDLRVAALNVEAF 73
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 26.9 bits (60), Expect = 5.6
Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 8/121 (6%)
Query: 66 VNMNESILRLQGAASDVDAVEYKLNRSEDAFQELNKKSCALKKILSRIPDEITDRKTFLE 125
L + ++ V +L R+ + LN LK I R +
Sbjct: 75 AGSAYVELVFEENGEEI-TVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSI 133
Query: 126 TIKEIASAIKKLLDAVNEVSGFIPGPSNKQALEQRKRE-FVKFSKRFSNTLKDYFKEGQA 184
+ I + + E+ +K R + + ++ F+ + F G+
Sbjct: 134 VGQGQIDRI--VNASPEELRLES----SKHPTSLVPRGSYQRVNESFNRFISLLFFGGEG 187
Query: 185 N 185
Sbjct: 188 R 188
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 26.8 bits (60), Expect = 5.9
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 10/55 (18%)
Query: 147 FIPGPSN----------KQALEQRKREFVKFSKRFSNTLKDYFKEGQANSVYVSA 191
PGPSN + L E +K ++ F+ + +SA
Sbjct: 23 MGPGPSNAPQRVLDAMSRPILGHLHPETLKIMDDIKEGVRYLFQTNNIATFCLSA 77
>1f07_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel; HET: MPO; 2.00A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.1.16.3
Length = 321
Score = 26.6 bits (59), Expect = 7.1
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 113 IPDEITDRKTFLETIKEIASAIKKLLDA-VNEVSGFIP-GPSNKQALEQ 159
+ D + + + + T E I+ L + V + P GP +++++
Sbjct: 265 VDDALMEAFSVVGTPDEFIPKIEALGEMGVTQYVAGSPIGPDKEKSIKL 313
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 26.4 bits (59), Expect = 7.2
Identities = 6/53 (11%), Positives = 14/53 (26%), Gaps = 10/53 (18%)
Query: 147 FIPGPSN-----KQALEQ-----RKREFVKFSKRFSNTLKDYFKEGQANSVYV 189
PGP K+A+ + ++ L + + +
Sbjct: 8 LTPGPLTTSRTVKEAMLFDSCTWDDDYNIGVVEQIRQQLTALATASEGYTSVL 60
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 26.4 bits (59), Expect = 7.7
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 24 QLEKRDVQASQTLRAALSRTETANP 48
+ ++ ++ L A ++ + NP
Sbjct: 16 LVRSGEISRTELLEATIAHVQAVNP 40
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 26.4 bits (59), Expect = 8.0
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 10/55 (18%)
Query: 147 FIPGPSN----------KQALEQRKREFVKFSKRFSNTLKDYFKEGQANSVYVSA 191
PGP+ + E ++ ++ L F G+ V A
Sbjct: 4 LTPGPTPIPERVQKALLRPMRGHLDPEVLRVNRAIQERLAALFDPGEGALVAALA 58
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane
protein, membrane fusion protein complex, coiled coil,
transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Length = 65
Score = 24.7 bits (54), Expect = 8.1
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 58 IMRQGELSVNMNESILR----LQGAASDVDAVEYKLNRSEDAFQELNK 101
I RQ ++ + + + A+ V+ + KL +++
Sbjct: 18 ISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR 65
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate
aminotransferase, pyridoxal-5-phosphate, SAD, glycolate
pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae}
SCOP: c.67.1.3
Length = 385
Score = 26.5 bits (59), Expect = 8.3
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 10/44 (22%)
Query: 147 FIPGPSN----------KQALEQRKREFVKFSKRFSNTLKDYFK 180
IPGP +L EFV +R + FK
Sbjct: 9 LIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFK 52
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein,
outer membrane; HET: UNL; 2.30A {Escherichia coli}
Length = 446
Score = 26.1 bits (58), Expect = 9.4
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 20 PILSQLEKRDVQASQTLRAALSRTETA 46
+ L + ++ LR A + + A
Sbjct: 44 NQVKTLISEALVNNRDLRMATLKVQEA 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.349
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,977,234
Number of extensions: 172328
Number of successful extensions: 497
Number of sequences better than 10.0: 1
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 51
Length of query: 210
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 121
Effective length of database: 4,216,824
Effective search space: 510235704
Effective search space used: 510235704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.9 bits)