RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4283
         (210 letters)



>d1f07a_ c.1.16.3 (A:) Coenzyme F420 dependent
           tetrahydromethanopterin reductase {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 321

 Score = 28.9 bits (63), Expect = 0.37
 Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 110 LSRIPDEITDRKTFLETIKEIASAIKKLLDA-VNEVSGFIP-GPSNKQALE 158
           +  + D + +  + + T  E    I+ L +  V +     P GP  +++++
Sbjct: 262 IGAVDDALMEAFSVVGTPDEFIPKIEALGEMGVTQYVAGSPIGPDKEKSIK 312


>d1ezwa_ c.1.16.3 (A:) Coenzyme F420 dependent
           tetrahydromethanopterin reductase {Archaeon Methanopyrus
           kandleri [TaxId: 2320]}
          Length = 347

 Score = 28.9 bits (63), Expect = 0.44
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 110 LSRIPDEITDRKTFLETIKEIASAIKKLLDA-VNEVS-GFIPGPSNKQALE 158
           +  + +++ +  +       +   I++LL A V +V  G   GP  ++A+E
Sbjct: 286 IGLVDEDMIEAFSIAGDPDTVVDKIEELLKAGVTQVVVGSPIGPDKEKAIE 336


>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis
           elegans [TaxId: 6239]}
          Length = 272

 Score = 26.1 bits (57), Expect = 2.7
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 76  QGAASDVDAVEYKLNRSEDAFQELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIK 135
           +GA  +V        R E+  Q + K   + K++ S + D +T      + I        
Sbjct: 28  EGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVAD-VTTEDGQDQIINSTLKQFG 84

Query: 136 KLLDAVNEVSGFIPGPSNKQALEQRKREFVK 166
           K+   VN     IP        +Q    + K
Sbjct: 85  KIDVLVNNAGAAIPDAFGTTGTDQGIDIYHK 115


>d1k04a_ a.24.14.1 (A:) FAT domain of focal adhesion kinase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 142

 Score = 25.5 bits (56), Expect = 3.1
 Identities = 8/33 (24%), Positives = 20/33 (60%)

Query: 123 FLETIKEIASAIKKLLDAVNEVSGFIPGPSNKQ 155
           ++  +KE+  A++ LL  V+E    +P  ++++
Sbjct: 43  YVPMVKEVGLALRTLLATVDETIPLLPASTHRE 75


>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
          hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 537

 Score = 25.8 bits (55), Expect = 4.2
 Identities = 3/28 (10%), Positives = 10/28 (35%)

Query: 21 ILSQLEKRDVQASQTLRAALSRTETANP 48
          ++ +L+  ++         L +    N 
Sbjct: 46 LVQKLQSGELSPEAVFFTYLGKAWEVNK 73


>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
          subunit A {Staphylococcus aureus [TaxId: 1280]}
          Length = 485

 Score = 25.5 bits (55), Expect = 5.1
 Identities = 4/28 (14%), Positives = 14/28 (50%)

Query: 21 ILSQLEKRDVQASQTLRAALSRTETANP 48
          +L+ ++ + ++ S  ++      E  +P
Sbjct: 11 LLTLIKDKKIKPSDVVKDIYDAIEETDP 38


>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode
           (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 264

 Score = 24.9 bits (54), Expect = 6.7
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 76  QGAASDVDAVEYKLNRSEDAFQELNKKSCALKKILSRIPDEITDRKTFLETIKEIASAIK 135
           +GA   V        R E+  Q++     + + + S + D +T      E +        
Sbjct: 28  EGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVAD-VTTDAGQDEILSTTLGKFG 84

Query: 136 KLLDAVNEVSGFIPGPSNKQALEQRKREF 164
           KL   VN     IP   +K    Q    +
Sbjct: 85  KLDILVNNAGAAIPDSQSKTGTAQSIESY 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.349 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 699,879
Number of extensions: 30770
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 19
Length of query: 210
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,295,466
Effective search space: 167115114
Effective search space used: 167115114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)