BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4285
(533 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|147902441|ref|NP_001085526.1| MGC80325 protein [Xenopus laevis]
gi|49117945|gb|AAH72889.1| MGC80325 protein [Xenopus laevis]
Length = 335
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 159/300 (53%), Positives = 193/300 (64%), Gaps = 63/300 (21%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RFI E++LPHLLFYGPPGTGKT+TILACA++LY +FN+MVLELNASDDRGI
Sbjct: 34 DILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYKDREFNSMVLELNASDDRGI 93
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR + FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 94 DIVRGPVLSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 153
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL------DYDDIS-------------------- 445
SKI PA+QSRCTRFRFGPL S +++ RL ++ DIS
Sbjct: 154 SKIIPALQSRCTRFRFGPLSSEMMIPRLEHVVKEEHVDISPDGMKALVTLSNGDMRRSLN 213
Query: 446 ----------------------------FFNIIIW---------YIKIQEIKIEKGLALT 468
NI+ W Y I E+K KGLAL
Sbjct: 214 ILQSTNMAYSKVTEDTVYTCTGHPLRSDIANILDWMLNKDFTSAYKNIMELKTLKGLALH 273
Query: 469 DILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
DILTEI L VHR++ P + + L++KM+DIEYRLA+GTSEKIQLS++IAAF ARD + A
Sbjct: 274 DILTEIHLYVHRVDFPALVRIHLLVKMADIEYRLASGTSEKIQLSSMIAAFQVARDMVAA 333
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/194 (47%), Positives = 130/194 (67%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL S +++ RL++V+++E V+++PDG
Sbjct: 137 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSEMMIPRLEHVVKEEHVDISPDG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS+GDMR+ LNILQS A++ +V EDT++T + + LD +++
Sbjct: 197 MKALVTLSNGDMRRSLNILQSTNMAYS-KVTEDTVYTCTGHPLRSDIANILDWMLNKDFT 255
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P + + L++KM+DIEYRLA+GTSEKI
Sbjct: 256 SAYKNIMELKTLKGLALHDILTEIHLYVHRVDFPALVRIHLLVKMADIEYRLASGTSEKI 315
Query: 154 QLSALIAAFNSARD 167
QLS++IAAF ARD
Sbjct: 316 QLSSMIAAFQVARD 329
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 130/250 (52%), Gaps = 64/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLDEL+SHQDI+STI+ I E L L+ + GT + + A
Sbjct: 18 VEKYRPQTLDELISHQDILSTIQRFISEDKLPHLL-------FYGPPGTGKTSTILACAK 70
Query: 161 AFNSARD-KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
R+ VLELNASDDRGI IVR + FAST+T+ K +KL+ILDEADAMT DAQ
Sbjct: 71 QLYKDREFNSMVLELNASDDRGIDIVRGPVLSFASTRTIFKKGFKLVILDEADAMTQDAQ 130
Query: 220 NALRRKL---------------------------------PVTPDG---------KKAII 237
NALRR + P++ + K+ +
Sbjct: 131 NALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSEMMIPRLEHVVKEEHV 190
Query: 238 DLS-----------DGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
D+S +GDMR+ LNILQS A++ +V EDTVY G+P +++I NIL W+
Sbjct: 191 DISPDGMKALVTLSNGDMRRSLNILQSTNMAYS-KVTEDTVYTCTGHPLRSDIANILDWM 249
Query: 287 LNESMDLCYK 296
LN+ YK
Sbjct: 250 LNKDFTSAYK 259
>gi|157123250|ref|XP_001660080.1| replication factor c / DNA polymerase iii gamma-tau subunit [Aedes
aegypti]
gi|108874432|gb|EAT38657.1| AAEL009465-PA [Aedes aegypti]
Length = 330
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 159/294 (54%), Positives = 187/294 (63%), Gaps = 64/294 (21%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
IN+FI E +LPHLLFYGPPGTGKT+TILACAR+LY FN MVLELNASDDRGI IVR+
Sbjct: 33 INKFIQEEQLPHLLFYGPPGTGKTSTILACARQLYKPQSFNQMVLELNASDDRGINIVRN 92
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+T+ YKLIILDEADAMTNDAQNALRRIIEK+T NVRFCIICNYLSKI P
Sbjct: 93 QILNFASTRTIFSGGYKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIP 152
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY----------DD----------------------- 443
A+QSRCTRFRF PL I+ RL++ DD
Sbjct: 153 ALQSRCTRFRFAPLSPDQILPRLEHVIDAEGIKVSDDGKKALMTLAGGDMRKVLNVLQST 212
Query: 444 ---------------------ISFFNIIIWYI----------KIQEIKIEKGLALTDILT 472
I NI+ W + KIQE+K KGLAL DILT
Sbjct: 213 WMAYKDVTEDNVYTCVGHPLKIDITNIVNWLLNVESFKETFEKIQELKTNKGLALEDILT 272
Query: 473 EISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKL 526
EI L VHR+E+P ++ L++KM+ +E RLAAG EK Q+++LIAAF ARD++
Sbjct: 273 EIHLYVHRMELPPRVMSQLLIKMAAVEERLAAGCVEKPQMASLIAAFQIARDQV 326
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/199 (45%), Positives = 129/199 (64%), Gaps = 29/199 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYLSKI PA+QSRCTRFRF PL I+ RL++VI+ E + V+ DG
Sbjct: 131 IEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDQILPRLEHVIDAEGIKVSDDG 190
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL--------------VSRVEKY 106
KKA++ L+ GDMRKVLN+LQS A+ D V ED ++T + + VE +
Sbjct: 191 KKALMTLAGGDMRKVLNVLQSTWMAYKD-VTEDNVYTCVGHPLKIDITNIVNWLLNVESF 249
Query: 107 RPS--TLDELVSH-----QDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+ + + EL ++ +DI++ I E+P ++ L++KM+ +E RLAAG EK
Sbjct: 250 KETFEKIQELKTNKGLALEDILTEIHLYVHRMELPPRVMSQLLIKMAAVEERLAAGCVEK 309
Query: 153 IQLSALIAAFNSARDKLEV 171
Q+++LIAAF ARD++ V
Sbjct: 310 PQMASLIAAFQIARDQVIV 328
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 128/241 (53%), Gaps = 62/241 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+TL +L+SH++IISTI I E L L+ G + I L+
Sbjct: 12 VEKYRPATLSDLISHEEIISTINKFIQEEQLPHLLFYGPP-----GTGKTSTI-LACARQ 65
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ VLELNASDDRGI IVR+QI FAST+T+ YKLIILDEADAMTNDAQN
Sbjct: 66 LYKPQSFNQMVLELNASDDRGINIVRNQILNFASTRTIFSGGYKLIILDEADAMTNDAQN 125
Query: 221 ALRRKL---------------------------------PVTP----------------- 230
ALRR + P++P
Sbjct: 126 ALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDQILPRLEHVIDAEGIK 185
Query: 231 ---DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
DGKKA++ L+ GDMRKVLN+LQS A+ D V ED VY VG+P K +ITNI+ WLL
Sbjct: 186 VSDDGKKALMTLAGGDMRKVLNVLQSTWMAYKD-VTEDNVYTCVGHPLKIDITNIVNWLL 244
Query: 288 N 288
N
Sbjct: 245 N 245
>gi|321458433|gb|EFX69502.1| hypothetical protein DAPPUDRAFT_202808 [Daphnia pulex]
Length = 330
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 154/295 (52%), Positives = 195/295 (66%), Gaps = 63/295 (21%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI+EN LPHLLFYGPPGTGKT+TILACA++LYT QFN+MVLELNASDDRGI
Sbjct: 26 DIISTIRKFINENRLPHLLFYGPPGTGKTSTILACAKELYTPQQFNSMVLELNASDDRGI 85
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI FAST+++ KS +KLIILDEADAMTNDAQNALRR+IEKFT NVRFC+ICNY+
Sbjct: 86 NVVRNQIMSFASTRSIFKSGFKLIILDEADAMTNDAQNALRRVIEKFTENVRFCLICNYM 145
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSR--------------------------------- 438
SKI PAIQSRCTRFRFGPL S I+ R
Sbjct: 146 SKIIPAIQSRCTRFRFGPLKSDQILPRMNYVIEEEKIKVTEDGRQALLSLAHGDMRRVIN 205
Query: 439 ------LDYDDIS---------------FFNIIIW---------YIKIQEIKIEKGLALT 468
+ +D+++ N++ W Y KI++++ KGLAL
Sbjct: 206 ILQSTSMAFDEVNEDHVYTCVGHPLKSDIANVVSWMLNEDLTSAYSKIRDLQTFKGLALQ 265
Query: 469 DILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
DILTE L VH++E P ++ V L+ KM+D+EYRL+AG SEK+QL +L+AAF+S +
Sbjct: 266 DILTETHLYVHKIEFPPNVRVFLLEKMADVEYRLSAGCSEKLQLGSLLAAFDSIK 320
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/193 (49%), Positives = 129/193 (66%), Gaps = 28/193 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT NVRFC+ICNY+SKI PAIQSRCTRFRFGPL S I+ R++YVIE+EK+ VT DG
Sbjct: 129 IEKFTENVRFCLICNYMSKIIPAIQSRCTRFRFGPLKSDQILPRMNYVIEEEKIKVTEDG 188
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------------------LV 100
++A++ L+ GDMR+V+NILQS + A DEVNED ++T L
Sbjct: 189 RQALLSLAHGDMRRVINILQSTSMAF-DEVNEDHVYTCVGHPLKSDIANVVSWMLNEDLT 247
Query: 101 SRVEKYRPSTLDELVSHQDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
S K R + ++ QDI++ IE P ++ V L+ KM+D+EYRL+AG SEK+
Sbjct: 248 SAYSKIRDLQTFKGLALQDILTETHLYVHKIEFPPNVRVFLLEKMADVEYRLSAGCSEKL 307
Query: 154 QLSALIAAFNSAR 166
QL +L+AAF+S +
Sbjct: 308 QLGSLLAAFDSIK 320
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 137/254 (53%), Gaps = 74/254 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD+L+SHQDIISTI I E+ L L+ + GT + + A
Sbjct: 10 VEKYRPKQLDDLISHQDIISTIRKFINENRLPHLL-------FYGPPGTGKTSTILACAK 62
Query: 161 ------AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 214
FNS VLELNASDDRGI +VR+QI FAST+++ KS +KLIILDEADAM
Sbjct: 63 ELYTPQQFNSM-----VLELNASDDRGINVVRNQIMSFASTRSIFKSGFKLIILDEADAM 117
Query: 215 TNDAQNALRR-------------------------------------------------- 224
TNDAQNALRR
Sbjct: 118 TNDAQNALRRVIEKFTENVRFCLICNYMSKIIPAIQSRCTRFRFGPLKSDQILPRMNYVI 177
Query: 225 ---KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITN 281
K+ VT DG++A++ L+ GDMR+V+NILQS + A DEVNED VY VG+P K++I N
Sbjct: 178 EEEKIKVTEDGRQALLSLAHGDMRRVINILQSTSMAF-DEVNEDHVYTCVGHPLKSDIAN 236
Query: 282 ILRWLLNESMDLCY 295
++ W+LNE + Y
Sbjct: 237 VVSWMLNEDLTSAY 250
>gi|260791339|ref|XP_002590697.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
gi|229275893|gb|EEN46708.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
Length = 329
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 152/296 (51%), Positives = 190/296 (64%), Gaps = 63/296 (21%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RF+DE+ LPHLLFYGPPGTGKT+TILACAR+LY +FN+MVLELNASDDRGI
Sbjct: 29 DIISTIQRFLDEDRLPHLLFYGPPGTGKTSTILACARRLYADREFNSMVLELNASDDRGI 88
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
GIVR + QFAST+T+ K +KL+ILDEADAMT DAQNALRR++EKFT N RFC+ICNYL
Sbjct: 89 GIVRGPVLQFASTRTIFKRGFKLVILDEADAMTGDAQNALRRVMEKFTENTRFCLICNYL 148
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL-------------------------------- 439
SKI PAIQSRCTRFRFGPL ++ RL
Sbjct: 149 SKIIPAIQSRCTRFRFGPLGVDQMLPRLEHVIQEEKVDVTDDGKKAILQLANGDMRRVLN 208
Query: 440 ------------DYDDISFF----------NIIIW---------YIKIQEIKIEKGLALT 468
D D++ NI+ W Y I ++K+ KGLAL
Sbjct: 209 ILQSTSMAHDVVDEDNVYLVTGQPLRSDIANIVNWMLNENFTTAYNNIFQLKVLKGLALQ 268
Query: 469 DILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
DILTE+ L VHR++ P ++ + L+ KM+D+EYRL+AGT+EK+QLS++IAAF R+
Sbjct: 269 DILTEVHLFVHRIDFPMAVKMVLLQKMADVEYRLSAGTNEKLQLSSVIAAFQVVRN 324
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 131/194 (67%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EKFT N RFC+ICNYLSKI PAIQSRCTRFRFGPL ++ RL++VI++EKV+VT DG
Sbjct: 132 MEKFTENTRFCLICNYLSKIIPAIQSRCTRFRFGPLGVDQMLPRLEHVIQEEKVDVTDDG 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL----LVSRVEKYRPSTLDE--- 113
KKAI+ L++GDMR+VLNILQS + AH D V+ED ++ + L S + L+E
Sbjct: 192 KKAILQLANGDMRRVLNILQSTSMAH-DVVDEDNVYLVTGQPLRSDIANIVNWMLNENFT 250
Query: 114 -------------LVSHQDIIST-------IEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
++ QDI++ I+ P ++ + L+ KM+D+EYRL+AGT+EK+
Sbjct: 251 TAYNNIFQLKVLKGLALQDILTEVHLFVHRIDFPMAVKMVLLQKMADVEYRLSAGTNEKL 310
Query: 154 QLSALIAAFNSARD 167
QLS++IAAF R+
Sbjct: 311 QLSSVIAAFQVVRN 324
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 106/255 (41%), Positives = 132/255 (51%), Gaps = 76/255 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + EL+SHQDIISTI+ L + + L G + S ++A
Sbjct: 13 VEKYRPKEMTELISHQDIISTIQ--------RFLDEDRLPHLLFYGPPGTGKTSTILACA 64
Query: 162 --------FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADA 213
FNS VLELNASDDRGIGIVR + QFAST+T+ K +KL+ILDEADA
Sbjct: 65 RRLYADREFNSM-----VLELNASDDRGIGIVRGPVLQFASTRTIFKRGFKLVILDEADA 119
Query: 214 MTNDAQNALRR------------------------------------------------- 224
MT DAQNALRR
Sbjct: 120 MTGDAQNALRRVMEKFTENTRFCLICNYLSKIIPAIQSRCTRFRFGPLGVDQMLPRLEHV 179
Query: 225 ----KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEIT 280
K+ VT DGKKAI+ L++GDMR+VLNILQS + AH D V+ED VY G P +++I
Sbjct: 180 IQEEKVDVTDDGKKAILQLANGDMRRVLNILQSTSMAH-DVVDEDNVYLVTGQPLRSDIA 238
Query: 281 NILRWLLNESMDLCY 295
NI+ W+LNE+ Y
Sbjct: 239 NIVNWMLNENFTTAY 253
>gi|48097300|ref|XP_393747.1| PREDICTED: replication factor C subunit 5-like [Apis mellifera]
Length = 328
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 155/291 (53%), Positives = 191/291 (65%), Gaps = 63/291 (21%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
IN+FIDEN LPHLLFYGPPGTGKT+TILACARKLYT AQFN+MVLE+NASDDRGI IVR
Sbjct: 35 INKFIDENLLPHLLFYGPPGTGKTSTILACARKLYTSAQFNSMVLEMNASDDRGINIVRG 94
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST TM+KS +KLIILDEADAMTNDAQNALRRIIEK+T NVRFCIICNYLSKI P
Sbjct: 95 QILSFASTGTMYKSGFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIP 154
Query: 417 AIQSRC-----------------------------------------------------T 423
A+QSRC T
Sbjct: 155 ALQSRCTKFRFGPLSIDQILPRLDTIIKEENLNVTEDGKQALITLSGGDMRKVLNVLQST 214
Query: 424 RFRFGPLDSSLIMSRLDYD-DISFFNIIIW---------YIKIQEIKIEKGLALTDILTE 473
FG + + S + + I NI+ W Y KIQ+IK++KGLAL DILTE
Sbjct: 215 WLAFGAVTEENVYSCVGHPLPIDIKNIVNWLFNESYELCYCKIQDIKLKKGLALQDILTE 274
Query: 474 ISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
+ L ++++E P+S+L+DL++K+++IE R++ G SE +QL+AL++AF +ARD
Sbjct: 275 LHLFINKIEFPDSILIDLIIKLAEIEKRVSIGCSEAVQLNALVSAFQNARD 325
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 108/248 (43%), Positives = 130/248 (52%), Gaps = 62/248 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD+L+SH++II TI I E++L L+ Y L+
Sbjct: 14 VEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLLF------YGPPGTGKTSTILACARK 67
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ SA+ VLE+NASDDRGI IVR QI FAST TM+KS +KLIILDEADAMTNDAQN
Sbjct: 68 LYTSAQFNSMVLEMNASDDRGINIVRGQILSFASTGTMYKSGFKLIILDEADAMTNDAQN 127
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR L
Sbjct: 128 ALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSIDQILPRLDTIIKEENLN 187
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
VT DGK+A+I LS GDMRKVLN+LQS A V E+ VY+ VG+P +I NI+ WL
Sbjct: 188 VTEDGKQALITLSGGDMRKVLNVLQSTWLAFG-AVTEENVYSCVGHPLPIDIKNIVNWLF 246
Query: 288 NESMDLCY 295
NES +LCY
Sbjct: 247 NESYELCY 254
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 90/194 (46%), Positives = 127/194 (65%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYLSKI PA+QSRCT+FRFGPL I+ RLD +I++E +NVT DG
Sbjct: 133 IEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSIDQILPRLDTIIKEENLNVTEDG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVE---------------- 104
K+A+I LS GDMRKVLN+LQS A V E+ +++ + +
Sbjct: 193 KQALITLSGGDMRKVLNVLQSTWLAFG-AVTEENVYSCVGHPLPIDIKNIVNWLFNESYE 251
Query: 105 ----KYRPSTLDELVSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
K + L + ++ QDI I+ IE P+S+L+DL++K+++IE R++ G SE +
Sbjct: 252 LCYCKIQDIKLKKGLALQDILTELHLFINKIEFPDSILIDLIIKLAEIEKRVSIGCSEAV 311
Query: 154 QLSALIAAFNSARD 167
QL+AL++AF +ARD
Sbjct: 312 QLNALVSAFQNARD 325
>gi|383849950|ref|XP_003700596.1| PREDICTED: replication factor C subunit 5-like [Megachile
rotundata]
Length = 329
Score = 291 bits (746), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 151/296 (51%), Positives = 194/296 (65%), Gaps = 63/296 (21%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+FI+E++LPHLLFYGPPGTGKT+TILACARKLYT QFN+MVLE+NASDDRGI
Sbjct: 30 DIIKTINKFINEDQLPHLLFYGPPGTGKTSTILACARKLYTAGQFNSMVLEMNASDDRGI 89
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
GIVR QI FAST T++KS +KLIILDEADAMTNDAQNALRRIIEK+T NVRFCIICNYL
Sbjct: 90 GIVRGQILNFASTGTLYKSGFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYL 149
Query: 412 SKIPPAIQSRC------------------------------------------------- 422
SKI PA+QSRC
Sbjct: 150 SKIIPALQSRCTKFRFGPLSSDQILPRLETIIKEENLNVSEDGKEALIALSGGDMRKVLN 209
Query: 423 ----TRFRFGPLDSSLIMSRLDYD-DISFFNIIIW---------YIKIQEIKIEKGLALT 468
T FG + + + + + I NI+ W Y KIQ+IK++KGLAL
Sbjct: 210 VLQSTWLAFGTVTEETVYTCVGHPLPIDIKNIVNWLLNESYELCYCKIQDIKLKKGLALQ 269
Query: 469 DILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
DILT++ L V+++E P+S+L++L++K+++IE R+A G SE +QL+AL++AF +AR+
Sbjct: 270 DILTQLHLFVNKIEFPDSILIELIIKLAEIEKRVAIGCSEPVQLNALVSAFQNARN 325
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 108/248 (43%), Positives = 129/248 (52%), Gaps = 62/248 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD+L+SH+DII TI I E L L+ Y L+
Sbjct: 14 VEKYRPKKLDDLISHEDIIKTINKFINEDQLPHLLF------YGPPGTGKTSTILACARK 67
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ + + VLE+NASDDRGIGIVR QI FAST T++KS +KLIILDEADAMTNDAQN
Sbjct: 68 LYTAGQFNSMVLEMNASDDRGIGIVRGQILNFASTGTLYKSGFKLIILDEADAMTNDAQN 127
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR L
Sbjct: 128 ALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSSDQILPRLETIIKEENLN 187
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
V+ DGK+A+I LS GDMRKVLN+LQS A V E+TVY VG+P +I NI+ WLL
Sbjct: 188 VSEDGKEALIALSGGDMRKVLNVLQSTWLAFG-TVTEETVYTCVGHPLPIDIKNIVNWLL 246
Query: 288 NESMDLCY 295
NES +LCY
Sbjct: 247 NESYELCY 254
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/194 (47%), Positives = 130/194 (67%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYLSKI PA+QSRCT+FRFGPL S I+ RL+ +I++E +NV+ DG
Sbjct: 133 IEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSSDQILPRLETIIKEENLNVSEDG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT----------------LLVSRVE 104
K+A+I LS GDMRKVLN+LQS A V E+T++T LL E
Sbjct: 193 KEALIALSGGDMRKVLNVLQSTWLAFG-TVTEETVYTCVGHPLPIDIKNIVNWLLNESYE 251
Query: 105 ----KYRPSTLDELVSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
K + L + ++ QDI ++ IE P+S+L++L++K+++IE R+A G SE +
Sbjct: 252 LCYCKIQDIKLKKGLALQDILTQLHLFVNKIEFPDSILIELIIKLAEIEKRVAIGCSEPV 311
Query: 154 QLSALIAAFNSARD 167
QL+AL++AF +AR+
Sbjct: 312 QLNALVSAFQNARN 325
>gi|158292645|ref|XP_314028.3| AGAP005144-PA [Anopheles gambiae str. PEST]
gi|157017089|gb|EAA09454.3| AGAP005144-PA [Anopheles gambiae str. PEST]
Length = 327
Score = 291 bits (745), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 158/291 (54%), Positives = 185/291 (63%), Gaps = 64/291 (21%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
IN+FI E +LPHLLFYGPPGTGKT+TILACAR+LY F +MVLELNASDDRGI IVR
Sbjct: 33 INKFIKEEQLPHLLFYGPPGTGKTSTILACARQLYKPQSFGSMVLELNASDDRGINIVRG 92
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+T+ K YKLIILDEADAMTNDAQNALRRIIEK+T NVRFCIICNYLSKI P
Sbjct: 93 QILDFASTRTIFKGGYKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLSKIIP 152
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY----------DD----------------------- 443
AIQSRCTRFRF PL I+ RL++ DD
Sbjct: 153 AIQSRCTRFRFAPLSPDQILPRLEHVVEAEGIDVTDDGKKALMTLAGGDMRKVLNVLQST 212
Query: 444 ---------ISFFN------------IIIW----------YIKIQEIKIEKGLALTDILT 472
++ +N II W Y KIQ++K +KGLAL DILT
Sbjct: 213 WMAYKKVTEVNVYNCVGHPLKEDINNIIFWLLNEESFKACYEKIQQLKTQKGLALEDILT 272
Query: 473 EISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
EI L+V+RLEIP + L++ ++ IE RLA G EK Q++ALIAAF+ R
Sbjct: 273 EIHLVVNRLEIPPRVSSQLLINLASIEERLADGCVEKPQITALIAAFSKVR 323
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 133/252 (52%), Gaps = 67/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP+ L++L+SH++II TI + +K + + L G + S ++A
Sbjct: 12 VEKYRPAKLNDLISHEEIIGTI--------NKFIKEEQLPHLLFYGPPGTGKTSTILACA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
+ VLELNASDDRGI IVR QI FAST+T+ K YKLIILDEADAMTNDA
Sbjct: 64 RQLYKPQSFGSMVLELNASDDRGINIVRGQILDFASTRTIFKGGYKLIILDEADAMTNDA 123
Query: 219 QNALRRKL---------------------------------PVTP--------------- 230
QNALRR + P++P
Sbjct: 124 QNALRRIIEKYTENVRFCIICNYLSKIIPAIQSRCTRFRFAPLSPDQILPRLEHVVEAEG 183
Query: 231 -----DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
DGKKA++ L+ GDMRKVLN+LQS A+ +V E VYN VG+P K +I NI+ W
Sbjct: 184 IDVTDDGKKALMTLAGGDMRKVLNVLQSTWMAY-KKVTEVNVYNCVGHPLKEDINNIIFW 242
Query: 286 LLN-ESMDLCYK 296
LLN ES CY+
Sbjct: 243 LLNEESFKACYE 254
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 86/193 (44%), Positives = 121/193 (62%), Gaps = 27/193 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYLSKI PAIQSRCTRFRF PL I+ RL++V+E E ++VT DG
Sbjct: 131 IEKYTENVRFCIICNYLSKIIPAIQSRCTRFRFAPLSPDQILPRLEHVVEAEGIDVTDDG 190
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH--ADEVN-------------EDTIFTLL------ 99
KKA++ L+ GDMRKVLN+LQS A+ EVN + IF LL
Sbjct: 191 KKALMTLAGGDMRKVLNVLQSTWMAYKKVTEVNVYNCVGHPLKEDINNIIFWLLNEESFK 250
Query: 100 -----VSRVEKYRPSTLDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ +++ + L+++++ +++ +EIP + L++ ++ IE RLA G EK
Sbjct: 251 ACYEKIQQLKTQKGLALEDILTEIHLVVNRLEIPPRVSSQLLINLASIEERLADGCVEKP 310
Query: 154 QLSALIAAFNSAR 166
Q++ALIAAF+ R
Sbjct: 311 QITALIAAFSKVR 323
>gi|114050971|ref|NP_001040148.1| replication factor C (activator 1) 5 [Bombyx mori]
gi|87248211|gb|ABD36158.1| replication factor C (activator 1) 5 [Bombyx mori]
Length = 334
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 153/300 (51%), Positives = 197/300 (65%), Gaps = 64/300 (21%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+ EN+LPHLLFYGPPGTGKT+TILACA+++YT QF++MVLELNASDDRGI
Sbjct: 29 DIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGI 88
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
GIVR QI FAST+T+ K+ KLIILDEADAMTNDAQNALRRIIEK+T NVRFCIICNYL
Sbjct: 89 GIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYL 148
Query: 412 SKIPPAIQSRCTRFRF-------------------------GPLDSSLIMSRLD------ 440
KI PA+QSRCTRFRF G + + L +S D
Sbjct: 149 GKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLN 208
Query: 441 --------YDDISFFN---------------IIIWYIK----------IQEIKIEKGLAL 467
Y D++ N I+ W + IQ++KI KGLAL
Sbjct: 209 TLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLAL 268
Query: 468 TDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLE 527
+DIL E+ ++ R+++P +LV L++KMSD E RLA+G+SE+++L+ALIA+F ARD+++
Sbjct: 269 SDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVELAALIASFQIARDQVK 328
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 121/199 (60%), Gaps = 29/199 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYL KI PA+QSRCTRFRF PL I+ RL ++ E V ++ G
Sbjct: 132 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGG 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQD- 119
KA++ LS GDMRKVLN LQS A+ D V ED ++T + + S L+ L++ D
Sbjct: 192 MKALLTLSGGDMRKVLNTLQSTWLAYRD-VTEDNVYTCVGHPLRADIDSILNWLLNENDF 250
Query: 120 ---------------------------IISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
II +++P +LV L++KMSD E RLA+G+SE+
Sbjct: 251 SACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSER 310
Query: 153 IQLSALIAAFNSARDKLEV 171
++L+ALIA+F ARD++++
Sbjct: 311 VELAALIASFQIARDQVKL 329
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 130/252 (51%), Gaps = 67/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LD+LVSH DII TI + +K + + + L G + S ++A
Sbjct: 13 VEKYRPKRLDDLVSHDDIIKTI--------NQFMKENQLPHLLFYGPPGTGKTSTILACA 64
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
+ + VLELNASDDRGIGIVR QI FAST+T+ K+ KLIILDEADAMTNDA
Sbjct: 65 KQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDA 124
Query: 219 QNALRRKL---------------------------------PVTPD-------------- 231
QNALRR + P+ D
Sbjct: 125 QNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEG 184
Query: 232 ------GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
G KA++ LS GDMRKVLN LQS A+ D V ED VY VG+P + +I +IL W
Sbjct: 185 VKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRD-VTEDNVYTCVGHPLRADIDSILNW 243
Query: 286 LLNES-MDLCYK 296
LLNE+ C+K
Sbjct: 244 LLNENDFSACFK 255
>gi|312372786|gb|EFR20672.1| hypothetical protein AND_19724 [Anopheles darlingi]
Length = 335
Score = 287 bits (735), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 154/291 (52%), Positives = 184/291 (63%), Gaps = 64/291 (21%)
Query: 298 NRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQ 357
N+FI E +LPHLLFYGPPGTGKT+TILACAR+LY F +MVLELNASDDRGI IVR Q
Sbjct: 42 NKFIKEEQLPHLLFYGPPGTGKTSTILACARQLYKPQSFGSMVLELNASDDRGINIVRGQ 101
Query: 358 IFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
I FAST+T+ K YKLIILDEADAMTNDAQNALRRIIEK+T NVRFCIICNYLSKI PA
Sbjct: 102 ILDFASTRTIFKGGYKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLSKIIPA 161
Query: 418 IQSRCTRFRFGPLDSSLIMSRLDY------------------------------------ 441
IQSRCTRFRF PL I+ RL++
Sbjct: 162 IQSRCTRFRFAPLGVEQILPRLEHVIEAEGIEATEDGKKALITLAGGDMRKVLNVLQSTW 221
Query: 442 ------DDISFFN------------IIIW----------YIKIQEIKIEKGLALTDILTE 473
+I+ +N II W Y KIQ++K +KGLAL DILTE
Sbjct: 222 MAYKSVTEINVYNCVGHPLKEDINDIIFWLLNEESFKTCYEKIQQLKTQKGLALEDILTE 281
Query: 474 ISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
I L+++RLEIP + L++ ++ IE RLA G EK Q++ALI+AF+ R+
Sbjct: 282 IHLVINRLEIPPRVSSQLLITLASIEERLADGCVEKPQIAALISAFSKVRE 332
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 87/194 (44%), Positives = 120/194 (61%), Gaps = 27/194 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYLSKI PAIQSRCTRFRF PL I+ RL++VIE E + T DG
Sbjct: 139 IEKYTENVRFCIICNYLSKIIPAIQSRCTRFRFAPLGVEQILPRLEHVIEAEGIEATEDG 198
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD--EVN-------------EDTIFTLL------ 99
KKA+I L+ GDMRKVLN+LQS A+ E+N D IF LL
Sbjct: 199 KKALITLAGGDMRKVLNVLQSTWMAYKSVTEINVYNCVGHPLKEDINDIIFWLLNEESFK 258
Query: 100 -----VSRVEKYRPSTLDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ +++ + L+++++ +I+ +EIP + L++ ++ IE RLA G EK
Sbjct: 259 TCYEKIQQLKTQKGLALEDILTEIHLVINRLEIPPRVSSQLLITLASIEERLADGCVEKP 318
Query: 154 QLSALIAAFNSARD 167
Q++ALI+AF+ R+
Sbjct: 319 QIAALISAFSKVRE 332
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 95/180 (52%), Gaps = 55/180 (30%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRR------ 224
VLELNASDDRGI IVR QI FAST+T+ K YKLIILDEADAMTNDAQNALRR
Sbjct: 84 VLELNASDDRGINIVRGQILDFASTRTIFKGGYKLIILDEADAMTNDAQNALRRIIEKYT 143
Query: 225 ------------------------KLPVTPDG-----------------------KKAII 237
+ P G KKA+I
Sbjct: 144 ENVRFCIICNYLSKIIPAIQSRCTRFRFAPLGVEQILPRLEHVIEAEGIEATEDGKKALI 203
Query: 238 DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN-ESMDLCYK 296
L+ GDMRKVLN+LQS A+ V E VYN VG+P K +I +I+ WLLN ES CY+
Sbjct: 204 TLAGGDMRKVLNVLQSTWMAYKS-VTEINVYNCVGHPLKEDINDIIFWLLNEESFKTCYE 262
>gi|380015701|ref|XP_003691836.1| PREDICTED: replication factor C subunit 5-like [Apis florea]
Length = 330
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 154/292 (52%), Positives = 190/292 (65%), Gaps = 64/292 (21%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
IN+FIDEN LPHLLFYGPPGTGKT+TILACARKLYT AQFN+MVLE+NASDDRGI IVR
Sbjct: 36 INKFIDENLLPHLLFYGPPGTGKTSTILACARKLYTPAQFNSMVLEMNASDDRGINIVRG 95
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST TM++S +KLIILDEADAMTNDAQNALRRIIEK+T NVRFCIICNYLSKI P
Sbjct: 96 QILSFASTGTMYRSGFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIP 155
Query: 417 AIQSRC-----------------------------------------------------T 423
A+QSRC T
Sbjct: 156 ALQSRCTKFRFGPLSIDQILPRLDTIIKEENLNVTEDGKQALITLSGGDMRKVLNVLQST 215
Query: 424 RFRFGPLDSSLIMSRLDYD-DISFFNIIIW---------YIKIQEIKIEKGLALTDILTE 473
FG + + S + + I NI+ W Y KIQ+IK++KGLAL DILTE
Sbjct: 216 WLAFGAVTEENVYSCVGHPLPIDIKNIVNWLFNESYELCYCKIQDIKLKKGLALQDILTE 275
Query: 474 ISLLVHRL-EIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
+ L + ++ E P+S+L+DL++K+++IE R++ G SE +QL+AL++AF +ARD
Sbjct: 276 LHLFIIKVFEFPDSILIDLIIKLAEIEKRVSIGCSEAVQLNALVSAFQNARD 327
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 110/254 (43%), Positives = 133/254 (52%), Gaps = 74/254 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI- 159
VEKYRP LD+L+SH++II TI I E++L L+ + GT + + A
Sbjct: 15 VEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLL-------FYGPPGTGKTSTILACAR 67
Query: 160 -----AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 214
A FNS VLE+NASDDRGI IVR QI FAST TM++S +KLIILDEADAM
Sbjct: 68 KLYTPAQFNSM-----VLEMNASDDRGINIVRGQILSFASTGTMYRSGFKLIILDEADAM 122
Query: 215 TNDAQNALRR-------------------------------------------------- 224
TNDAQNALRR
Sbjct: 123 TNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSIDQILPRLDTII 182
Query: 225 ---KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITN 281
L VT DGK+A+I LS GDMRKVLN+LQS A V E+ VY+ VG+P +I N
Sbjct: 183 KEENLNVTEDGKQALITLSGGDMRKVLNVLQSTWLAFG-AVTEENVYSCVGHPLPIDIKN 241
Query: 282 ILRWLLNESMDLCY 295
I+ WL NES +LCY
Sbjct: 242 IVNWLFNESYELCY 255
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 126/195 (64%), Gaps = 29/195 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYLSKI PA+QSRCT+FRFGPL I+ RLD +I++E +NVT DG
Sbjct: 134 IEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSIDQILPRLDTIIKEENLNVTEDG 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL--------------------- 99
K+A+I LS GDMRKVLN+LQS A V E+ +++ +
Sbjct: 194 KQALITLSGGDMRKVLNVLQSTWLAFG-AVTEENVYSCVGHPLPIDIKNIVNWLFNESYE 252
Query: 100 -----VSRVEKYRPSTLDELVS--HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+ ++ + L ++++ H II E P+S+L+DL++K+++IE R++ G SE
Sbjct: 253 LCYCKIQDIKLKKGLALQDILTELHLFIIKVFEFPDSILIDLIIKLAEIEKRVSIGCSEA 312
Query: 153 IQLSALIAAFNSARD 167
+QL+AL++AF +ARD
Sbjct: 313 VQLNALVSAFQNARD 327
>gi|291238303|ref|XP_002739068.1| PREDICTED: replication factor C 5-like [Saccoglossus kowalevskii]
Length = 331
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 153/298 (51%), Positives = 188/298 (63%), Gaps = 67/298 (22%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+RFI E+ LPHLLFYGPPGTGKT+TILA A++LY+ +FN+MVLELNASDDRGI
Sbjct: 29 DILSTIDRFIKEDRLPHLLFYGPPGTGKTSTILAVAKQLYSPKEFNSMVLELNASDDRGI 88
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
GIVR + FAST+T+ KS +K++ILDEADAMTNDAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 89 GIVRGPVLSFASTRTIFKSGFKIVILDEADAMTNDAQNALRRVIEKFTENTRFCLICNYL 148
Query: 412 SKIPPAIQSRCTRFRFGP---------LDSSLIMSRLD---------------------- 440
SKI PAIQSRCTRFRFGP L+ + R+D
Sbjct: 149 SKIIPAIQSRCTRFRFGPLDNQQMVPRLEHVIQQERVDVTEDGMNALVTLANGDMRKSLN 208
Query: 441 --------YD-----------------DISFFNIIIW---------YIKIQEIKIEKGLA 466
YD DIS NI+ W Y I ++K KGLA
Sbjct: 209 ILQSTSMAYDVVNEVNVYTCVGHPLKEDIS--NIVNWMLNEDFTTAYNNILDLKTLKGLA 266
Query: 467 LTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
L DILTE+ +H++E+P + + L+ KM++IEY L AGT+EKIQL +LIAAF RD
Sbjct: 267 LQDILTEVHKFIHKVELPTKVRIKLLDKMAEIEYNLTAGTNEKIQLGSLIAAFQVTRD 324
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 127/194 (65%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PAIQSRCTRFRFGPLD+ ++ RL++VI+QE+V+VT DG
Sbjct: 132 IEKFTENTRFCLICNYLSKIIPAIQSRCTRFRFGPLDNQQMVPRLEHVIQQERVDVTEDG 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
A++ L++GDMRK LNILQS + A+ D VNE ++T + +++ + ++ +++
Sbjct: 192 MNALVTLANGDMRKSLNILQSTSMAY-DVVNEVNVYTCVGHPLKEDISNIVNWMLNEDFT 250
Query: 118 -----------------QDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
QDI I +E+P + + L+ KM++IEY L AGT+EKI
Sbjct: 251 TAYNNILDLKTLKGLALQDILTEVHKFIHKVELPTKVRIKLLDKMAEIEYNLTAGTNEKI 310
Query: 154 QLSALIAAFNSARD 167
QL +LIAAF RD
Sbjct: 311 QLGSLIAAFQVTRD 324
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 108/286 (37%), Positives = 142/286 (49%), Gaps = 95/286 (33%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP+ L+EL+SH DI+STI D +K + + L G + S ++A
Sbjct: 13 VEKYRPNKLEELISHADILSTI--------DRFIKEDRLPHLLFYGPPGTGKTSTILAVA 64
Query: 162 --------FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADA 213
FNS VLELNASDDRGIGIVR + FAST+T+ KS +K++ILDEADA
Sbjct: 65 KQLYSPKEFNSM-----VLELNASDDRGIGIVRGPVLSFASTRTIFKSGFKIVILDEADA 119
Query: 214 MTNDAQNALRR------------------------------------------------- 224
MTNDAQNALRR
Sbjct: 120 MTNDAQNALRRVIEKFTENTRFCLICNYLSKIIPAIQSRCTRFRFGPLDNQQMVPRLEHV 179
Query: 225 ----KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEIT 280
++ VT DG A++ L++GDMRK LNILQS + A+ D VNE VY VG+P K +I+
Sbjct: 180 IQQERVDVTEDGMNALVTLANGDMRKSLNILQSTSMAY-DVVNEVNVYTCVGHPLKEDIS 238
Query: 281 NILRWLLNESMDLCY-------------------KINRFIDENELP 307
NI+ W+LNE Y ++++FI + ELP
Sbjct: 239 NIVNWMLNEDFTTAYNNILDLKTLKGLALQDILTEVHKFIHKVELP 284
>gi|320163538|gb|EFW40437.1| replication factor C 5 [Capsaspora owczarzaki ATCC 30864]
Length = 348
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 141/297 (47%), Positives = 188/297 (63%), Gaps = 65/297 (21%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+RFI E+ +PHLLFYGPPGTGKT+TILACA+K+Y + +MVLELNASDDRGI
Sbjct: 48 DIISTIDRFITEDRVPHLLFYGPPGTGKTSTILACAKKMYGN-RMQSMVLELNASDDRGI 106
Query: 352 GIVRDQIFQFASTKTMHKSS-YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
G+VR+QI +FAST+T+ S KL+ILDEADAMT+DAQ ALRR+IEK+T N RFC+ICNY
Sbjct: 107 GVVREQIKEFASTRTITSSGGTKLVILDEADAMTSDAQAALRRVIEKYTRNTRFCLICNY 166
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY----------------------------- 441
+SKI PAIQSRCTRFRF PL S ++ RL++
Sbjct: 167 VSKITPAIQSRCTRFRFAPLSSEQMLDRLNFVIESERVNVTDDGKAALMRLAQGDMRKVL 226
Query: 442 -------------DDISFF------------NIIIWYI---------KIQEIKIEKGLAL 467
D+ S + I+ W + I E+K++KGLAL
Sbjct: 227 NILQSTAMAFDTVDETSVYTCTGFPLPADIETIVQWLLNEPFTSAMANIGELKLQKGLAL 286
Query: 468 TDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
DIL E+ + R+E P ++ + L+ +++DIEYRL+AGT+E+IQL +L+A FN+ RD
Sbjct: 287 QDILREVHEFMARIEFPANVRIYLLKQLADIEYRLSAGTNERIQLGSLVAVFNTGRD 343
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 128/194 (65%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFC+ICNY+SKITPAIQSRCTRFRF PL S ++ RL++VIE E+VNVT DG
Sbjct: 151 IEKYTRNTRFCLICNYVSKITPAIQSRCTRFRFAPLSSEQMLDRLNFVIESERVNVTDDG 210
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL----LVSRVEKYRPSTLDELVS 116
K A++ L+ GDMRKVLNILQS A A D V+E +++T L + +E L+E +
Sbjct: 211 KAALMRLAQGDMRKVLNILQSTAMAF-DTVDETSVYTCTGFPLPADIETIVQWLLNEPFT 269
Query: 117 H----------------QDII-------STIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
QDI+ + IE P ++ + L+ +++DIEYRL+AGT+E+I
Sbjct: 270 SAMANIGELKLQKGLALQDILREVHEFMARIEFPANVRIYLLKQLADIEYRLSAGTNERI 329
Query: 154 QLSALIAAFNSARD 167
QL +L+A FN+ RD
Sbjct: 330 QLGSLVAVFNTGRD 343
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 130/243 (53%), Gaps = 64/243 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS+LDEL+SH+DIISTI+ I E + L+ + GT + + A
Sbjct: 32 VEKYRPSSLDELISHKDIISTIDRFITEDRVPHLL-------FYGPPGTGKTSTILACAK 84
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS-SYKLIILDEADAMTNDAQ 219
R + VLELNASDDRGIG+VR+QI +FAST+T+ S KL+ILDEADAMT+DAQ
Sbjct: 85 KMYGNRMQSMVLELNASDDRGIGVVREQIKEFASTRTITSSGGTKLVILDEADAMTSDAQ 144
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR ++
Sbjct: 145 AALRRVIEKYTRNTRFCLICNYVSKITPAIQSRCTRFRFAPLSSEQMLDRLNFVIESERV 204
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
VT DGK A++ L+ GDMRKVLNILQS A A D V+E +VY G+P +I I++WL
Sbjct: 205 NVTDDGKAALMRLAQGDMRKVLNILQSTAMAF-DTVDETSVYTCTGFPLPADIETIVQWL 263
Query: 287 LNE 289
LNE
Sbjct: 264 LNE 266
>gi|340720472|ref|XP_003398661.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Bombus
terrestris]
gi|340720474|ref|XP_003398662.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Bombus
terrestris]
Length = 329
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 117/144 (81%), Positives = 131/144 (90%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
IN+FIDEN+LPHLLFYGPPGTGKT+TILACARKLYT AQFN+MVLE+NASDDRGIGIVR
Sbjct: 35 INKFIDENQLPHLLFYGPPGTGKTSTILACARKLYTPAQFNSMVLEMNASDDRGIGIVRG 94
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST TM++S +KLIILDEADAMT DAQNALRRIIEK+T NVRFCIICNYLS+I P
Sbjct: 95 QILSFASTGTMYRSGFKLIILDEADAMTKDAQNALRRIIEKYTDNVRFCIICNYLSQIIP 154
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLD 440
A+QSRCT+FRFGPL + I+ RLD
Sbjct: 155 ALQSRCTKFRFGPLSTDQILPRLD 178
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/254 (43%), Positives = 135/254 (53%), Gaps = 74/254 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI- 159
VEKYRP LD+L+SH++II TI I E+ L L+ + GT + + A
Sbjct: 14 VEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLL-------FYGPPGTGKTSTILACAR 66
Query: 160 -----AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 214
A FNS VLE+NASDDRGIGIVR QI FAST TM++S +KLIILDEADAM
Sbjct: 67 KLYTPAQFNSM-----VLEMNASDDRGIGIVRGQILSFASTGTMYRSGFKLIILDEADAM 121
Query: 215 TNDAQNALRR-------------------------------------------------- 224
T DAQNALRR
Sbjct: 122 TKDAQNALRRIIEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQILPRLDAII 181
Query: 225 ---KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITN 281
L V+ DGK+A+I LS GDMRKVLN+LQS + A + V E+ VY+ VG+P +I N
Sbjct: 182 KEENLNVSEDGKQALITLSGGDMRKVLNVLQSTSLAFS-AVTEENVYSCVGHPLPIDIKN 240
Query: 282 ILRWLLNESMDLCY 295
I+ WLLNES +LCY
Sbjct: 241 IINWLLNESYELCY 254
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 130/194 (67%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYLS+I PA+QSRCT+FRFGPL + I+ RLD +I++E +NV+ DG
Sbjct: 133 IEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQILPRLDAIIKEENLNVSEDG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT----------------LLVSRVE 104
K+A+I LS GDMRKVLN+LQS + A + V E+ +++ LL E
Sbjct: 193 KQALITLSGGDMRKVLNVLQSTSLAFS-AVTEENVYSCVGHPLPIDIKNIINWLLNESYE 251
Query: 105 ----KYRPSTLDELVSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
K + L + ++ QDI ++ IE P+S+L+DLV+K+++IE R++ G SE +
Sbjct: 252 LCYCKIQDIKLKKGLALQDILTELHLFVNKIEFPDSVLIDLVIKLAEIEKRVSIGCSEAV 311
Query: 154 QLSALIAAFNSARD 167
QL+AL++AF ARD
Sbjct: 312 QLNALVSAFQRARD 325
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 65/86 (75%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NII W Y KIQ+IK++KGLAL DILTE+ L V+++E P+S+L+DLV+K+++I
Sbjct: 240 NIINWLLNESYELCYCKIQDIKLKKGLALQDILTELHLFVNKIEFPDSVLIDLVIKLAEI 299
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
E R++ G SE +QL+AL++AF ARD
Sbjct: 300 EKRVSIGCSEAVQLNALVSAFQRARD 325
>gi|350412747|ref|XP_003489747.1| PREDICTED: replication factor C subunit 5-like [Bombus impatiens]
Length = 329
Score = 258 bits (658), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 117/144 (81%), Positives = 131/144 (90%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
IN+FIDEN+LPHLLFYGPPGTGKT+TILACARKLYT AQFN+MVLE+NASDDRGIGIVR
Sbjct: 35 INKFIDENQLPHLLFYGPPGTGKTSTILACARKLYTPAQFNSMVLEMNASDDRGIGIVRG 94
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST TM++S +KLIILDEADAMT DAQNALRRIIEK+T NVRFCIICNYLS+I P
Sbjct: 95 QILSFASTGTMYRSGFKLIILDEADAMTKDAQNALRRIIEKYTDNVRFCIICNYLSQIIP 154
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLD 440
A+QSRCT+FRFGPL + I+ RLD
Sbjct: 155 ALQSRCTKFRFGPLSTDQILPRLD 178
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 110/254 (43%), Positives = 135/254 (53%), Gaps = 74/254 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI- 159
VEKYRP LD+L+SH++II TI I E+ L L+ + GT + + A
Sbjct: 14 VEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLL-------FYGPPGTGKTSTILACAR 66
Query: 160 -----AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 214
A FNS VLE+NASDDRGIGIVR QI FAST TM++S +KLIILDEADAM
Sbjct: 67 KLYTPAQFNSM-----VLEMNASDDRGIGIVRGQILSFASTGTMYRSGFKLIILDEADAM 121
Query: 215 TNDAQNALRR-------------------------------------------------- 224
T DAQNALRR
Sbjct: 122 TKDAQNALRRIIEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQILPRLDTII 181
Query: 225 ---KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITN 281
L V+ DGK+A+I LS GDMRKVLN+LQS + A + V E+ VY+ VG+P +I N
Sbjct: 182 KEENLNVSEDGKQALITLSGGDMRKVLNVLQSTSLAFS-AVTEENVYSCVGHPLPIDIKN 240
Query: 282 ILRWLLNESMDLCY 295
I+ WLLNES +LCY
Sbjct: 241 IINWLLNESYELCY 254
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 130/194 (67%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYLS+I PA+QSRCT+FRFGPL + I+ RLD +I++E +NV+ DG
Sbjct: 133 IEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQILPRLDTIIKEENLNVSEDG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT----------------LLVSRVE 104
K+A+I LS GDMRKVLN+LQS + A + V E+ +++ LL E
Sbjct: 193 KQALITLSGGDMRKVLNVLQSTSLAFS-AVTEENVYSCVGHPLPIDIKNIINWLLNESYE 251
Query: 105 ----KYRPSTLDELVSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
K + L + ++ QDI ++ IE P+S+L+DLV+K+++IE R++ G SE +
Sbjct: 252 LCYCKIQDIKLKKGLALQDILTELHLFVNKIEFPDSILIDLVIKLAEIEKRVSIGCSEAV 311
Query: 154 QLSALIAAFNSARD 167
QL+AL++AF ARD
Sbjct: 312 QLNALVSAFQRARD 325
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 65/86 (75%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NII W Y KIQ+IK++KGLAL DILTE+ L V+++E P+S+L+DLV+K+++I
Sbjct: 240 NIINWLLNESYELCYCKIQDIKLKKGLALQDILTELHLFVNKIEFPDSILIDLVIKLAEI 299
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
E R++ G SE +QL+AL++AF ARD
Sbjct: 300 EKRVSIGCSEAVQLNALVSAFQRARD 325
>gi|345484012|ref|XP_001599543.2| PREDICTED: replication factor C subunit 5-like [Nasonia
vitripennis]
Length = 285
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 117/145 (80%), Positives = 130/145 (89%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
IN+FIDEN+LPHLL YGPPGTGKT+TILACA+KLYT QFN+MVLELNASDDRGIGIVR
Sbjct: 36 INKFIDENQLPHLLLYGPPGTGKTSTILACAKKLYTPQQFNSMVLELNASDDRGIGIVRG 95
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST TM++S YKLIILDEADAMTNDAQNALRRIIEK+T NVRFCIICNYLSKI P
Sbjct: 96 QILSFASTGTMYRSGYKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIP 155
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
A+QSRCT+FRFGPL I+ RL++
Sbjct: 156 ALQSRCTKFRFGPLAPEQILPRLEH 180
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 108/248 (43%), Positives = 130/248 (52%), Gaps = 62/248 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS LD+L+SH++II TI I E+ L L+L Y L+
Sbjct: 15 VEKYRPSKLDDLISHEEIIQTINKFIDENQLPHLLL------YGPPGTGKTSTILACAKK 68
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ + VLELNASDDRGIGIVR QI FAST TM++S YKLIILDEADAMTNDAQN
Sbjct: 69 LYTPQQFNSMVLELNASDDRGIGIVRGQILSFASTGTMYRSGYKLIILDEADAMTNDAQN 128
Query: 221 ALRRKL---------------------------------PVTP----------------- 230
ALRR + P+ P
Sbjct: 129 ALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLAPEQILPRLEHVITEENVT 188
Query: 231 ---DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
DGKKA++ LS GDMRKV+N+LQS A VNE+ VY VG+P +I NI+ WLL
Sbjct: 189 VTEDGKKALMTLSGGDMRKVINVLQSTWLAFGC-VNEENVYTCVGHPLPVDIKNIINWLL 247
Query: 288 NESMDLCY 295
NES + Y
Sbjct: 248 NESYEAAY 255
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 76/97 (78%), Gaps = 1/97 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYLSKI PA+QSRCT+FRFGPL I+ RL++VI +E V VT DG
Sbjct: 134 IEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLAPEQILPRLEHVITEENVTVTEDG 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT 97
KKA++ LS GDMRKV+N+LQS A VNE+ ++T
Sbjct: 194 KKALMTLSGGDMRKVINVLQSTWLAFGC-VNEENVYT 229
>gi|193676219|ref|XP_001942989.1| PREDICTED: replication factor C subunit 5-like [Acyrthosiphon
pisum]
Length = 329
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 116/150 (77%), Positives = 132/150 (88%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E++LPHLLFYGPPGTGKT+TILACA++LYT AQF +MVLELNASDDRGI
Sbjct: 27 DIIQTIGKFIKEDQLPHLLFYGPPGTGKTSTILACAKQLYTPAQFRSMVLELNASDDRGI 86
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR Q+ FAST+T+ KS +KLIILDEADAMTNDAQNALRRIIEKFT NVRFC+ICNYL
Sbjct: 87 NVVRGQVLNFASTRTIFKSGFKLIILDEADAMTNDAQNALRRIIEKFTDNVRFCLICNYL 146
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPLDS IM RL+Y
Sbjct: 147 SKIIPALQSRCTRFRFGPLDSKQIMPRLEY 176
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/197 (52%), Positives = 135/197 (68%), Gaps = 28/197 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT NVRFC+ICNYLSKI PA+QSRCTRFRFGPLDS IM RL+YV+EQEKV VT DG
Sbjct: 130 IEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLDSKQIMPRLEYVVEQEKVKVTEDG 189
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL--------------------V 100
KKA+IDL+ GDMRKVLNILQSAATA EVNED+++T +
Sbjct: 190 KKALIDLAQGDMRKVLNILQSAATAFP-EVNEDSVYTCVGHPLKSDIMNILKWLLNDDFS 248
Query: 101 SRVEKYRPSTLDELVSHQDIIST-------IEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ +K + + + ++ QDI++ +++P L++++ +M+DIE RL GTSEKI
Sbjct: 249 TTFKKIQELKIQKGLALQDILTELHTFLYRLDLPPDSLIEILTEMADIEIRLNGGTSEKI 308
Query: 154 QLSALIAAFNSARDKLE 170
L +LI+AF+ R KL+
Sbjct: 309 HLGSLISAFHMIRSKLK 325
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 113/251 (45%), Positives = 141/251 (56%), Gaps = 66/251 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP+TLD+L+SH+DII TI +K + + L G + S ++A
Sbjct: 11 VEKYRPNTLDDLISHEDIIQTI--------GKFIKEDQLPHLLFYGPPGTGKTSTILACA 62
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
+ A+ + VLELNASDDRGI +VR Q+ FAST+T+ KS +KLIILDEADAMTNDA
Sbjct: 63 KQLYTPAQFRSMVLELNASDDRGINVVRGQVLNFASTRTIFKSGFKLIILDEADAMTNDA 122
Query: 219 QNALRR-----------------------------------------------------K 225
QNALRR K
Sbjct: 123 QNALRRIIEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLDSKQIMPRLEYVVEQEK 182
Query: 226 LPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
+ VT DGKKA+IDL+ GDMRKVLNILQSAATA EVNED+VY VG+P K++I NIL+W
Sbjct: 183 VKVTEDGKKALIDLAQGDMRKVLNILQSAATAFP-EVNEDSVYTCVGHPLKSDIMNILKW 241
Query: 286 LLNESMDLCYK 296
LLN+ +K
Sbjct: 242 LLNDDFSTTFK 252
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 63/93 (67%), Gaps = 9/93 (9%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W + KIQE+KI+KGLAL DILTE+ ++RL++P L++++ +M+DI
Sbjct: 237 NILKWLLNDDFSTTFKKIQELKIQKGLALQDILTELHTFLYRLDLPPDSLIEILTEMADI 296
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARDKLEAPPD 531
E RL GTSEKI L +LI+AF+ R KL+ D
Sbjct: 297 EIRLNGGTSEKIHLGSLISAFHMIRSKLKPADD 329
>gi|307170254|gb|EFN62614.1| Replication factor C subunit 5 [Camponotus floridanus]
Length = 329
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 118/145 (81%), Positives = 130/145 (89%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
IN+FIDEN+LPHLL YGPPGTGKT+TILACARKLYT QFN+MVLELNASDDRGIGIVR
Sbjct: 36 INKFIDENQLPHLLLYGPPGTGKTSTILACARKLYTPTQFNSMVLELNASDDRGIGIVRG 95
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST TM+KS++KLIILDEADAMT DAQNALRRIIEK+T NVRFCIICNYLSKI P
Sbjct: 96 QILSFASTGTMYKSAFKLIILDEADAMTIDAQNALRRIIEKYTDNVRFCIICNYLSKIIP 155
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
A+QSRCTRFRF PL + I+ RL+Y
Sbjct: 156 ALQSRCTRFRFLPLAAEQIIPRLNY 180
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 134/249 (53%), Gaps = 62/249 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +LDEL+SH+ II TI I E+ L L+L G + I L+
Sbjct: 15 VEKYRPKSLDELISHETIIRTINKFIDENQLPHLLLYGPP-----GTGKTSTI-LACARK 68
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ + VLELNASDDRGIGIVR QI FAST TM+KS++KLIILDEADAMT DAQN
Sbjct: 69 LYTPTQFNSMVLELNASDDRGIGIVRGQILSFASTGTMYKSAFKLIILDEADAMTIDAQN 128
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR L
Sbjct: 129 ALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNYVIEAENLK 188
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
VT DGK+A++ LS GDMRKVL++LQS A+ VN++ VYN VG+P ++I I+ WLL
Sbjct: 189 VTEDGKEALMTLSGGDMRKVLSVLQSTWFAYGI-VNQENVYNCVGHPLPSDIHTIINWLL 247
Query: 288 NESMDLCYK 296
NES D CYK
Sbjct: 248 NESYDTCYK 256
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/194 (44%), Positives = 124/194 (63%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYLSKI PA+QSRCTRFRF PL + I+ RL+YVIE E + VT DG
Sbjct: 134 IEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNYVIEAENLKVTEDG 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRV----------------- 103
K+A++ LS GDMRKVL++LQS A+ VN++ ++ + +
Sbjct: 194 KEALMTLSGGDMRKVLSVLQSTWFAYGI-VNQENVYNCVGHPLPSDIHTIINWLLNESYD 252
Query: 104 ---EKYRPSTLDELVSHQDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
+K + L++ ++ QDI++ I + P S+ +DL+ KM++IE RLA+G + I
Sbjct: 253 TCYKKIQELKLNKGLALQDILTEIHLCVIKIDFPNSVFIDLLCKMAEIEKRLASGCRDII 312
Query: 154 QLSALIAAFNSARD 167
Q+++LI+AF RD
Sbjct: 313 QINSLISAFYKVRD 326
>gi|149720613|ref|XP_001490846.1| PREDICTED: replication factor C subunit 5 [Equus caballus]
Length = 340
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 143/298 (47%), Positives = 175/298 (58%), Gaps = 67/298 (22%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 39 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 98
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 99 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 158
Query: 412 SK-IP--------------------PAIQS------------------------------ 420
SK IP P +Q
Sbjct: 159 SKIIPALQSRCTRFRFGPLTPELMVPRLQHVVEEEKVAISEDGMKALVTLSSGDMRRALN 218
Query: 421 --RCTRFRFGPLDSSLIMSRLDY---DDISFFNIIIW---------YIKIQEIKIEKGLA 466
+ T FG + + + + DI+ NI+ W Y I E+K KGLA
Sbjct: 219 ILQSTNMAFGKVTEETVYTCTGHPLKSDIA--NILDWMLNQDFTTAYRNITELKTLKGLA 276
Query: 467 LTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
L DILTEI L VHR++ P S+ + L+ KM+DIEYRL+ GT+EKIQLS+LIAAF RD
Sbjct: 277 LHDILTEIHLFVHRVDFPTSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRD 334
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 123/194 (63%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL +V+E+EKV ++ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVVEEEKVAISEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 260
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L+ KM+DIEYRL+ GT+EKI
Sbjct: 261 TAYRNITELKTLKGLALHDILTEIHLFVHRVDFPTSVRIHLLTKMADIEYRLSVGTNEKI 320
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 321 QLSSLIAAFQVTRD 334
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVVEEE 193
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 194 KVAISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 252
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 253 WMLNQDFTTAYR 264
>gi|332023241|gb|EGI63497.1| Replication factor C subunit 5 [Acromyrmex echinatior]
Length = 327
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 142/293 (48%), Positives = 180/293 (61%), Gaps = 67/293 (22%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
IN++IDEN+LPHLL YGPPGTGKT+TILACARKLYT AQFN+MVLELNASDDRGIGIVR
Sbjct: 34 INKYIDENQLPHLLLYGPPGTGKTSTILACARKLYTPAQFNSMVLELNASDDRGIGIVRG 93
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII--------- 407
QI FAST TM+KS++KLIILDEADAMT DAQNALRRIIEK+T NVRFCII
Sbjct: 94 QILSFASTGTMYKSAFKLIILDEADAMTIDAQNALRRIIEKYTDNVRFCIICNYLSKIIP 153
Query: 408 -----CNYLSKIPPAIQS---------------------------------------RCT 423
C +P A + + T
Sbjct: 154 ALQSRCTRFRFLPLAAEQIIPRLNHVIEAENLKVTEDGKQALITLSGGDMRKVISVLQST 213
Query: 424 RFRFGPLDSSLIMSRLDYD---DISFFNIIIW---------YIKIQEIKIEKGLALTDIL 471
F +G ++ + + + + DI+ +I+ W Y KIQE+K+ KGLAL DIL
Sbjct: 214 WFAYGAVNEENVYNCVGHPLPRDIT--SIVNWLLNESYDTCYKKIQELKLNKGLALQDIL 271
Query: 472 TEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
TE+ V +++ P+ + DL+ KM++IE RLA+G + IQL++LI+AF S RD
Sbjct: 272 TEVHSYVIKIDFPDQLFTDLLCKMAEIEKRLASGCRDNIQLNSLISAFYSVRD 324
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 113/249 (45%), Positives = 136/249 (54%), Gaps = 62/249 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +LDEL+SH+ II TI I E+ L L+L G + I L+
Sbjct: 13 VEKYRPKSLDELISHETIIKTINKYIDENQLPHLLLYGPP-----GTGKTSTI-LACARK 66
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ A+ VLELNASDDRGIGIVR QI FAST TM+KS++KLIILDEADAMT DAQN
Sbjct: 67 LYTPAQFNSMVLELNASDDRGIGIVRGQILSFASTGTMYKSAFKLIILDEADAMTIDAQN 126
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR L
Sbjct: 127 ALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNHVIEAENLK 186
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
VT DGK+A+I LS GDMRKV+++LQS A+ VNE+ VYN VG+P +IT+I+ WLL
Sbjct: 187 VTEDGKQALITLSGGDMRKVISVLQSTWFAYG-AVNEENVYNCVGHPLPRDITSIVNWLL 245
Query: 288 NESMDLCYK 296
NES D CYK
Sbjct: 246 NESYDTCYK 254
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 127/194 (65%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYLSKI PA+QSRCTRFRF PL + I+ RL++VIE E + VT DG
Sbjct: 132 IEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNHVIEAENLKVTEDG 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF-----------TLLVSRV------ 103
K+A+I LS GDMRKV+++LQS A+ VNE+ ++ T +V+ +
Sbjct: 192 KQALITLSGGDMRKVISVLQSTWFAYG-AVNEENVYNCVGHPLPRDITSIVNWLLNESYD 250
Query: 104 ---EKYRPSTLDELVSHQDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+K + L++ ++ QDI++ I+ P+ + DL+ KM++IE RLA+G + I
Sbjct: 251 TCYKKIQELKLNKGLALQDILTEVHSYVIKIDFPDQLFTDLLCKMAEIEKRLASGCRDNI 310
Query: 154 QLSALIAAFNSARD 167
QL++LI+AF S RD
Sbjct: 311 QLNSLISAFYSVRD 324
>gi|307191665|gb|EFN75139.1| Replication factor C subunit 5 [Harpegnathos saltator]
Length = 329
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 118/146 (80%), Positives = 131/146 (89%), Gaps = 1/146 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMV-LELNASDDRGIGIVR 355
IN+FIDEN+LPHLL YGPPGTGKT+TILACARKLYT AQFN+MV LELNASDDRGIGIVR
Sbjct: 35 INKFIDENQLPHLLLYGPPGTGKTSTILACARKLYTPAQFNSMVVLELNASDDRGIGIVR 94
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
QI FAST TM+KS++KLIILDEADAMT DAQNALRRIIEK+T NVRFCIICNYLSKI
Sbjct: 95 GQILSFASTGTMYKSAFKLIILDEADAMTIDAQNALRRIIEKYTDNVRFCIICNYLSKII 154
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
PA+QSRCTRFRF PL + I+ RL++
Sbjct: 155 PALQSRCTRFRFLPLAAEQIIPRLNH 180
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 114/253 (45%), Positives = 134/253 (52%), Gaps = 69/253 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA--- 157
VEKYRP LDEL+SH+ II TI I E+ L L+L G + I A
Sbjct: 14 VEKYRPKNLDELISHETIIKTINKFIDENQLPHLLLYGPP-----GTGKTSTILACARKL 68
Query: 158 -LIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
A FNS + VLELNASDDRGIGIVR QI FAST TM+KS++KLIILDEADAMT
Sbjct: 69 YTPAQFNS----MVVLELNASDDRGIGIVRGQILSFASTGTMYKSAFKLIILDEADAMTI 124
Query: 217 DAQNALRR---------------------------------------------------- 224
DAQNALRR
Sbjct: 125 DAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNHVIEA 184
Query: 225 -KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
L VT DGK+A++ LS GDMRKV+++LQS A+ VNE VYN VG+P ++I NI+
Sbjct: 185 ENLNVTEDGKQALMTLSGGDMRKVISVLQSTWFAYGI-VNEGNVYNCVGHPLPSDIRNIV 243
Query: 284 RWLLNESMDLCYK 296
WLLNE D CYK
Sbjct: 244 NWLLNEPYDTCYK 256
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 86/194 (44%), Positives = 125/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYLSKI PA+QSRCTRFRF PL + I+ RL++VIE E +NVT DG
Sbjct: 134 IEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNHVIEAENLNVTEDG 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRV-------------EKY- 106
K+A++ LS GDMRKV+++LQS A+ VNE ++ + + E Y
Sbjct: 194 KQALMTLSGGDMRKVISVLQSTWFAYGI-VNEGNVYNCVGHPLPSDIRNIVNWLLNEPYD 252
Query: 107 ------RPSTLDELVSHQDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ L++ ++ QDI++ I + P+S+ +DL+ K+++IE RLA+G + I
Sbjct: 253 TCYKNIQQLKLNKGLALQDILTEIHLCVIKIDFPDSIFIDLLCKLAEIEKRLASGCRDAI 312
Query: 154 QLSALIAAFNSARD 167
Q+++LI+AF RD
Sbjct: 313 QVNSLISAFYKIRD 326
>gi|195434144|ref|XP_002065063.1| GK15259 [Drosophila willistoni]
gi|194161148|gb|EDW76049.1| GK15259 [Drosophila willistoni]
Length = 331
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 112/144 (77%), Positives = 126/144 (87%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
INRFI + +LPHLLFYGPPGTGKT+TILACAR+LYT AQF +MVLELNASDDRGIGIVR
Sbjct: 34 INRFIGQKQLPHLLFYGPPGTGKTSTILACARQLYTPAQFKSMVLELNASDDRGIGIVRG 93
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+T+ ++KLIILDEADAMTNDAQNALRRIIEK+T NVRFC+ICNYLSKI P
Sbjct: 94 QILNFASTRTIFCGTFKLIILDEADAMTNDAQNALRRIIEKYTENVRFCVICNYLSKIIP 153
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLD 440
A+QSRCTRFRF PL ++ RLD
Sbjct: 154 ALQSRCTRFRFAPLSPEQMLPRLD 177
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 134/252 (53%), Gaps = 67/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP+ L++L+SH++I+STI + + + + L G + S ++A
Sbjct: 13 VEKYRPNNLEDLISHEEIVSTI--------NRFIGQKQLPHLLFYGPPGTGKTSTILACA 64
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
+ A+ K VLELNASDDRGIGIVR QI FAST+T+ ++KLIILDEADAMTNDA
Sbjct: 65 RQLYTPAQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCGTFKLIILDEADAMTNDA 124
Query: 219 QNALRRKL---------------------------------PVTP--------------- 230
QNALRR + P++P
Sbjct: 125 QNALRRIIEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQMLPRLDKIVEAEA 184
Query: 231 -----DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
DGKKA++ L+ GDMRKVLN+LQS A +EVNE+ VY VGYP K + IL
Sbjct: 185 VTITDDGKKALLTLAKGDMRKVLNVLQSTVMAF-NEVNENNVYMCVGYPLKQDTEQILNA 243
Query: 286 LLN-ESMDLCYK 296
LL+ ES +K
Sbjct: 244 LLSGESFKAAFK 255
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 121/195 (62%), Gaps = 29/195 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFC+ICNYLSKI PA+QSRCTRFRF PL ++ RLD ++E E V +T DG
Sbjct: 132 IEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQMLPRLDKIVEAEAVTITDDG 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KKA++ L+ GDMRKVLN+LQS A +EVNE+ ++ + +++ L+ L+S
Sbjct: 192 KKALLTLAKGDMRKVLNVLQSTVMAF-NEVNENNVYMCVGYPLKQDTEQILNALLSGESF 250
Query: 118 ------------------QDIIST-------IEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+DI++ +E+P S++ L++K++ IE RL+ G +E
Sbjct: 251 KAAFKTIEDAKSRRGLALEDILTELHLFVMRLELPMSVMNKLIIKLAQIEERLSKGCTEG 310
Query: 153 IQLSALIAAFNSARD 167
Q++AL++AF RD
Sbjct: 311 AQIAALVSAFFICRD 325
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 50/69 (72%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I++ K +GLAL DILTE+ L V RLE+P S++ L++K++ IE RL+ G +E Q++AL
Sbjct: 257 IEDAKSRRGLALEDILTELHLFVMRLELPMSVMNKLIIKLAQIEERLSKGCTEGAQIAAL 316
Query: 516 IAAFNSARD 524
++AF RD
Sbjct: 317 VSAFFICRD 325
>gi|442754535|gb|JAA69427.1| Putative replication factor c subunit rfc5 [Ixodes ricinus]
Length = 328
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 111/150 (74%), Positives = 129/150 (86%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRFI+E+ LPHLLFYGPPGTGKT+TILACAR++Y +F +MVLELNASDDRGI
Sbjct: 30 DIISTINRFINEDRLPHLLFYGPPGTGKTSTILACARQIYGPKEFGSMVLELNASDDRGI 89
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
GIVR +I FASTK++ KS +KLIILDEADAMTNDAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 90 GIVRGEILNFASTKSIFKSGFKLIILDEADAMTNDAQNALRRVIEKFTENARFCLICNYL 149
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL S + R++Y
Sbjct: 150 SKIIPALQSRCTRFRFGPLSLSQMSPRIEY 179
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 96/193 (49%), Positives = 129/193 (66%), Gaps = 28/193 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL S + R++YVIEQE++ VT DG
Sbjct: 133 IEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSLSQMSPRIEYVIEQERLTVTDDG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF----------------TLL----- 99
KKA++DL+ GDMRK LNILQS + A +EV E+ ++ TLL
Sbjct: 193 KKALMDLAQGDMRKALNILQSTSMAF-EEVTENNVYQCVGLPLKSDISNMVITLLNEDFA 251
Query: 100 -----VSRVEKYRPSTLDELVSHQDI-ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+++V+ + L ++++ + + IE P + + L+ KM++IE RLAAGTSEKI
Sbjct: 252 FSYDQINKVKVSKGLALQDVLTQIHLYVHRIEFPNEVKMYLIDKMAEIENRLAAGTSEKI 311
Query: 154 QLSALIAAFNSAR 166
QLS+LIAAF +AR
Sbjct: 312 QLSSLIAAFQTAR 324
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 137/254 (53%), Gaps = 65/254 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+ LD+L++H+DIISTI I E L L+ + GT + + A
Sbjct: 14 VEKYRPNKLDDLIAHEDIISTINRFINEDRLPHLL-------FYGPPGTGKTSTILACAR 66
Query: 161 AFNSARD-KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
++ VLELNASDDRGIGIVR +I FASTK++ KS +KLIILDEADAMTNDAQ
Sbjct: 67 QIYGPKEFGSMVLELNASDDRGIGIVRGEILNFASTKSIFKSGFKLIILDEADAMTNDAQ 126
Query: 220 NALRR-----------------------------------------------------KL 226
NALRR +L
Sbjct: 127 NALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSLSQMSPRIEYVIEQERL 186
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
VT DGKKA++DL+ GDMRK LNILQS + A +EV E+ VY VG P K++I+N++ L
Sbjct: 187 TVTDDGKKALMDLAQGDMRKALNILQSTSMAF-EEVTENNVYQCVGLPLKSDISNMVITL 245
Query: 287 LNESMDLCY-KINR 299
LNE Y +IN+
Sbjct: 246 LNEDFAFSYDQINK 259
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 57/71 (80%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y +I ++K+ KGLAL D+LT+I L VHR+E P + + L+ KM++IE RLAAGTSEKIQL
Sbjct: 254 YDQINKVKVSKGLALQDVLTQIHLYVHRIEFPNEVKMYLIDKMAEIENRLAAGTSEKIQL 313
Query: 513 SALIAAFNSAR 523
S+LIAAF +AR
Sbjct: 314 SSLIAAFQTAR 324
>gi|156384148|ref|XP_001633193.1| predicted protein [Nematostella vectensis]
gi|156220260|gb|EDO41130.1| predicted protein [Nematostella vectensis]
Length = 329
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 137/300 (45%), Positives = 175/300 (58%), Gaps = 63/300 (21%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RFI+E LPHLLFYGPPGTGKT+TILA A++LY QF +MVLELNASDDRGI
Sbjct: 30 DIINTIQRFINEERLPHLLFYGPPGTGKTSTILAVAKQLYPDKQFGSMVLELNASDDRGI 89
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY- 410
GIVR I FAST+T+ KS +KL+ILDEADAMT DAQNALRR++EKFT N RFC+ICNY
Sbjct: 90 GIVRGDILSFASTRTIFKSGFKLVILDEADAMTQDAQNALRRVMEKFTENTRFCLICNYL 149
Query: 411 ------------------------LSKIPPAIQS---------RCTRFRFGPLDSSLIMS 437
L ++ I+S R + R D +++
Sbjct: 150 TKIIPALQSRCTRFRFGPLSVDQMLPRLEHVIESERVNVTDDGRKSLLRLAQGDMRKVLN 209
Query: 438 RLDYDDISF--------------------FNIIIW---------YIKIQEIKIEKGLALT 468
L +++ NI+ W Y I ++K KGLAL
Sbjct: 210 ILQSTSMAYSVVNEDHVYLCTGQPQPTDIGNIVDWMLNKDFTTAYTNILKLKTLKGLALQ 269
Query: 469 DILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
DIL E VHR++ P + + L+ KM+++EYRLA+GTSEKIQL ++IAAF ARD +EA
Sbjct: 270 DILEETHSYVHRVDFPAKIRIHLLDKMAEVEYRLASGTSEKIQLGSMIAAFQVARDMIEA 329
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 125/197 (63%), Gaps = 28/197 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EKFT N RFC+ICNYL+KI PA+QSRCTRFRFGPL ++ RL++VIE E+VNVT DG
Sbjct: 133 MEKFTENTRFCLICNYLTKIIPALQSRCTRFRFGPLSVDQMLPRLEHVIESERVNVTDDG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI-----------------------FT 97
+K+++ L+ GDMRKVLNILQS + A++ VNED + FT
Sbjct: 193 RKSLLRLAQGDMRKVLNILQSTSMAYS-VVNEDHVYLCTGQPQPTDIGNIVDWMLNKDFT 251
Query: 98 LLVSRVEKYRP----STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ + K + + D L + ++ P + + L+ KM+++EYRLA+GTSEKI
Sbjct: 252 TAYTNILKLKTLKGLALQDILEETHSYVHRVDFPAKIRIHLLDKMAEVEYRLASGTSEKI 311
Query: 154 QLSALIAAFNSARDKLE 170
QL ++IAAF ARD +E
Sbjct: 312 QLGSMIAAFQVARDMIE 328
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 130/249 (52%), Gaps = 64/249 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD+L+SH DII+TI+ I E L L+ + GT + + A+
Sbjct: 14 VEKYRPKCLDDLISHTDIINTIQRFINEERLPHLL-------FYGPPGTGKTSTILAVAK 66
Query: 161 A-FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
+ + VLELNASDDRGIGIVR I FAST+T+ KS +KL+ILDEADAMT DAQ
Sbjct: 67 QLYPDKQFGSMVLELNASDDRGIGIVRGDILSFASTRTIFKSGFKLVILDEADAMTQDAQ 126
Query: 220 NALRR-----------------------------------------------------KL 226
NALRR ++
Sbjct: 127 NALRRVMEKFTENTRFCLICNYLTKIIPALQSRCTRFRFGPLSVDQMLPRLEHVIESERV 186
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
VT DG+K+++ L+ GDMRKVLNILQS + A++ VNED VY G P T+I NI+ W+
Sbjct: 187 NVTDDGRKSLLRLAQGDMRKVLNILQSTSMAYS-VVNEDHVYLCTGQPQPTDIGNIVDWM 245
Query: 287 LNESMDLCY 295
LN+ Y
Sbjct: 246 LNKDFTTAY 254
>gi|195118794|ref|XP_002003921.1| GI18168 [Drosophila mojavensis]
gi|193914496|gb|EDW13363.1| GI18168 [Drosophila mojavensis]
Length = 332
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 111/144 (77%), Positives = 126/144 (87%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
INRFI++ +LPHLLFYGPPGTGKT+TILACAR+LY+ A F +MVLELNASDDRGIGIVR
Sbjct: 35 INRFINQKQLPHLLFYGPPGTGKTSTILACARQLYSPAHFKSMVLELNASDDRGIGIVRG 94
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+T+ ++KLIILDEADAMTNDAQNALRRIIEK+T NVRFCIICNYLSKI P
Sbjct: 95 QILNFASTRTIFCGTFKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLSKIIP 154
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLD 440
A+QSRCTRFRF PL +M RL+
Sbjct: 155 ALQSRCTRFRFAPLSPEQMMPRLN 178
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 135/245 (55%), Gaps = 66/245 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP+ LD+L+SH++IISTI + + + + L G + S ++A
Sbjct: 14 VEKYRPNCLDDLISHEEIISTI--------NRFINQKQLPHLLFYGPPGTGKTSTILACA 65
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
++ A K VLELNASDDRGIGIVR QI FAST+T+ ++KLIILDEADAMTNDA
Sbjct: 66 RQLYSPAHFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCGTFKLIILDEADAMTNDA 125
Query: 219 QNALRRKL---------------------------------PVTP--------------- 230
QNALRR + P++P
Sbjct: 126 QNALRRIIEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSPEQMMPRLNKVVEEEN 185
Query: 231 -----DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
DGKKA++ L+ GDMRKVLN+LQS + A D VNED VY VGYP ++EI N+L+
Sbjct: 186 VNITDDGKKALLTLAKGDMRKVLNVLQSTSMAF-DVVNEDNVYMCVGYPLRSEIENVLQT 244
Query: 286 LLNES 290
LL+ +
Sbjct: 245 LLSAA 249
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/195 (45%), Positives = 123/195 (63%), Gaps = 29/195 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYLSKI PA+QSRCTRFRF PL +M RL+ V+E+E VN+T DG
Sbjct: 133 IEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSPEQMMPRLNKVVEEENVNITDDG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF----------------TLL----- 99
KKA++ L+ GDMRKVLN+LQS + A D VNED ++ TLL
Sbjct: 193 KKALLTLAKGDMRKVLNVLQSTSMAF-DVVNEDNVYMCVGYPLRSEIENVLQTLLSAATF 251
Query: 100 ------VSRVEKYRPSTLDELVSHQDI-ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+ + R L+++V+ + I +E+P S++ L++K+++IE RL G SE
Sbjct: 252 DSAFDTIEEAKSKRGLALEDIVTELHLFIMRLELPMSVMNKLIIKLAEIEERLTKGCSET 311
Query: 153 IQLSALIAAFNSARD 167
Q +AL++AF +RD
Sbjct: 312 AQTAALVSAFFISRD 326
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 51/69 (73%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I+E K ++GLAL DI+TE+ L + RLE+P S++ L++K+++IE RL G SE Q +AL
Sbjct: 258 IEEAKSKRGLALEDIVTELHLFIMRLELPMSVMNKLIIKLAEIEERLTKGCSETAQTAAL 317
Query: 516 IAAFNSARD 524
++AF +RD
Sbjct: 318 VSAFFISRD 326
>gi|353231592|emb|CCD78010.1| putative replication factor C / DNA polymerase III gamma-tau
subunit [Schistosoma mansoni]
Length = 325
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 135/297 (45%), Positives = 177/297 (59%), Gaps = 64/297 (21%)
Query: 295 YKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIV 354
Y + RFID + LPHLLFYGPPGTGKT+TILA A++LY++ QF++MVLELNASDDRGI +V
Sbjct: 27 YDLKRFIDNDRLPHLLFYGPPGTGKTSTILAAAKRLYSR-QFSSMVLELNASDDRGIDVV 85
Query: 355 RDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
R+Q+ FASTKT+ +KL+ILDEAD+MT DAQNALRRIIEKFT N RFC+ICNYLSKI
Sbjct: 86 REQVLSFASTKTLFAGKFKLVILDEADSMTKDAQNALRRIIEKFTENTRFCLICNYLSKI 145
Query: 415 PPAIQSR----------------CTR------------------FRFGPLD--------S 432
PAIQSR C R ++F D
Sbjct: 146 IPAIQSRCTKFRFAPLAFNDVSTCLRKIASNEGVDLTDDGVKAIYQFASGDMRKSINLLQ 205
Query: 433 SLIMSRLDYDDISFFNIIIW---------------------YIKIQEIKIEKGLALTDIL 471
S MS D S + + + Y I +K KG+AL DI+
Sbjct: 206 STYMSSKTVDGPSVYACVAYPSPAEVRSLLDHVLNEPISTAYHNITAVKNLKGIALQDII 265
Query: 472 TEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
TEI L+ R+++P+ + DL++ +SDIE R++ G SE++QL A ++AF A+ LE+
Sbjct: 266 TEIHPLIMRIDLPDKIRCDLLIALSDIENRMSQGASERLQLGAFVSAFTRAKIALES 322
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 113/196 (57%), Gaps = 26/196 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PAIQSRCT+FRF PL + + + L + E V++T DG
Sbjct: 126 IEKFTENTRFCLICNYLSKIIPAIQSRCTKFRFAPLAFNDVSTCLRKIASNEGVDLTDDG 185
Query: 61 KKAIIDLSDGDMRKVLNILQS--------------AATAHA---------DEVNEDTIFT 97
KAI + GDMRK +N+LQS A A+ D V + I T
Sbjct: 186 VKAIYQFASGDMRKSINLLQSTYMSSKTVDGPSVYACVAYPSPAEVRSLLDHVLNEPIST 245
Query: 98 LL--VSRVEKYRPSTLDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
++ V+ + L ++++ +I I++P+ + DL++ +SDIE R++ G SE++Q
Sbjct: 246 AYHNITAVKNLKGIALQDIITEIHPLIMRIDLPDKIRCDLLIALSDIENRMSQGASERLQ 305
Query: 155 LSALIAAFNSARDKLE 170
L A ++AF A+ LE
Sbjct: 306 LGAFVSAFTRAKIALE 321
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 87/178 (48%), Gaps = 54/178 (30%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRR------ 224
VLELNASDDRGI +VR+Q+ FASTKT+ +KL+ILDEAD+MT DAQNALRR
Sbjct: 71 VLELNASDDRGIDVVREQVLSFASTKTLFAGKFKLVILDEADSMTKDAQNALRRIIEKFT 130
Query: 225 ------------------------KLPVTP-----------------------DGKKAII 237
K P DG KAI
Sbjct: 131 ENTRFCLICNYLSKIIPAIQSRCTKFRFAPLAFNDVSTCLRKIASNEGVDLTDDGVKAIY 190
Query: 238 DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCY 295
+ GDMRK +N+LQS + + V+ +VY V YP+ E+ ++L +LNE + Y
Sbjct: 191 QFASGDMRKSINLLQSTYMS-SKTVDGPSVYACVAYPSPAEVRSLLDHVLNEPISTAY 247
>gi|195384914|ref|XP_002051157.1| GJ14606 [Drosophila virilis]
gi|194147614|gb|EDW63312.1| GJ14606 [Drosophila virilis]
Length = 332
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 109/144 (75%), Positives = 126/144 (87%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
INRFI++ +LPHLLFYGPPGTGKT+TILACAR+LY+ A F +MVLELNASDDRGIGIVR
Sbjct: 35 INRFINQKQLPHLLFYGPPGTGKTSTILACARQLYSPAHFKSMVLELNASDDRGIGIVRG 94
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+T+ ++KLIILDEADAMTNDAQNALRRIIEK+T NVRFC+ICNYLSKI P
Sbjct: 95 QILNFASTRTIFCGTFKLIILDEADAMTNDAQNALRRIIEKYTENVRFCVICNYLSKIIP 154
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLD 440
A+QSRCTRFRF PL ++ RL+
Sbjct: 155 ALQSRCTRFRFAPLSPEQMLPRLN 178
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 133/245 (54%), Gaps = 66/245 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP+ LD+L+SH++IISTI + + + + L G + S ++A
Sbjct: 14 VEKYRPNCLDDLISHEEIISTI--------NRFINQKQLPHLLFYGPPGTGKTSTILACA 65
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
++ A K VLELNASDDRGIGIVR QI FAST+T+ ++KLIILDEADAMTNDA
Sbjct: 66 RQLYSPAHFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCGTFKLIILDEADAMTNDA 125
Query: 219 QNALRR-----------------------------------------KLP---------- 227
QNALRR LP
Sbjct: 126 QNALRRIIEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQMLPRLNKVIQEEN 185
Query: 228 --VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
VT DGK A++ L+ GDMRKVLN+LQS + A D VNED VY VGYP ++EI ++L+
Sbjct: 186 VNVTDDGKNALLTLAKGDMRKVLNVLQSTSMAF-DIVNEDNVYMCVGYPLRSEIEHMLQT 244
Query: 286 LLNES 290
LL+ +
Sbjct: 245 LLSAA 249
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 121/195 (62%), Gaps = 29/195 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFC+ICNYLSKI PA+QSRCTRFRF PL ++ RL+ VI++E VNVT DG
Sbjct: 133 IEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQMLPRLNKVIQEENVNVTDDG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF----------------TLL----- 99
K A++ L+ GDMRKVLN+LQS + A D VNED ++ TLL
Sbjct: 193 KNALLTLAKGDMRKVLNVLQSTSMAF-DIVNEDNVYMCVGYPLRSEIEHMLQTLLSAATF 251
Query: 100 ------VSRVEKYRPSTLDELVSHQDI-ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+ + R L+++V+ + I +E+P S++ L++KM+ +E RL G +E
Sbjct: 252 DSAFDTIEEAKSKRGLALEDIVTELHLFIMRLELPMSVMNKLIVKMAQVEERLTKGCTET 311
Query: 153 IQLSALIAAFNSARD 167
Q +AL++AF +RD
Sbjct: 312 AQTAALVSAFFISRD 326
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 50/69 (72%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I+E K ++GLAL DI+TE+ L + RLE+P S++ L++KM+ +E RL G +E Q +AL
Sbjct: 258 IEEAKSKRGLALEDIVTELHLFIMRLELPMSVMNKLIVKMAQVEERLTKGCTETAQTAAL 317
Query: 516 IAAFNSARD 524
++AF +RD
Sbjct: 318 VSAFFISRD 326
>gi|195051153|ref|XP_001993043.1| GH13305 [Drosophila grimshawi]
gi|193900102|gb|EDV98968.1| GH13305 [Drosophila grimshawi]
Length = 332
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 109/144 (75%), Positives = 126/144 (87%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I RFI++ +LPHLLFYGPPGTGKT+TILACAR+LY+ A F +MVLELNASDDRGIGIVR
Sbjct: 35 ITRFINQKQLPHLLFYGPPGTGKTSTILACARQLYSSAHFKSMVLELNASDDRGIGIVRG 94
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+T+ ++KLIILDEADAMTNDAQNALRRIIEK+T NVRFCIICNYLSKI P
Sbjct: 95 QILNFASTRTIFCGTFKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLSKIIP 154
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLD 440
A+QSRCTRFRF PL + ++ RL+
Sbjct: 155 ALQSRCTRFRFAPLSAEQMLPRLN 178
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 132/243 (54%), Gaps = 66/243 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP+ LD+L+SH++IISTI + + + L G + S ++A
Sbjct: 14 VEKYRPNCLDDLISHEEIISTI--------TRFINQKQLPHLLFYGPPGTGKTSTILACA 65
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
++SA K VLELNASDDRGIGIVR QI FAST+T+ ++KLIILDEADAMTNDA
Sbjct: 66 RQLYSSAHFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCGTFKLIILDEADAMTNDA 125
Query: 219 QNALRR-----------------------------------------KLP---------- 227
QNALRR LP
Sbjct: 126 QNALRRIIEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSAEQMLPRLNQIVQEEH 185
Query: 228 --VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
VT DGK A++ LS GDMRKVLN+LQS + A D VNED VY VGYP ++EI ++L+
Sbjct: 186 VNVTDDGKNALLTLSKGDMRKVLNVLQSTSMAF-DIVNEDNVYMCVGYPLRSEIEHMLQT 244
Query: 286 LLN 288
LL+
Sbjct: 245 LLS 247
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 124/195 (63%), Gaps = 29/195 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYLSKI PA+QSRCTRFRF PL + ++ RL+ ++++E VNVT DG
Sbjct: 133 IEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSAEQMLPRLNQIVQEEHVNVTDDG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF----------------TLL----- 99
K A++ LS GDMRKVLN+LQS + A D VNED ++ TLL
Sbjct: 193 KNALLTLSKGDMRKVLNVLQSTSMAF-DIVNEDNVYMCVGYPLRSEIEHMLQTLLSAATF 251
Query: 100 ------VSRVEKYRPSTLDELVSHQDI-ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+ + R L+++V+ + I +E+P S++ L++K++ +E RL+ G +EK
Sbjct: 252 ESAYDTIEEAKTKRGLALEDIVTELHLFIMRLELPMSVMNKLIVKLAQVEERLSKGCTEK 311
Query: 153 IQLSALIAAFNSARD 167
Q +AL++AF +RD
Sbjct: 312 AQTAALVSAFFISRD 326
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 53/72 (73%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I+E K ++GLAL DI+TE+ L + RLE+P S++ L++K++ +E RL+ G +EK Q
Sbjct: 255 YDTIEEAKTKRGLALEDIVTELHLFIMRLELPMSVMNKLIVKLAQVEERLSKGCTEKAQT 314
Query: 513 SALIAAFNSARD 524
+AL++AF +RD
Sbjct: 315 AALVSAFFISRD 326
>gi|198413770|ref|XP_002129710.1| PREDICTED: similar to replication factor C (activator 1) 5 (36.5
kDa) [Ciona intestinalis]
Length = 327
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 109/150 (72%), Positives = 127/150 (84%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+ F+ +N LPHLLFYGPPGTGKT+TILACARKLY+ QFN+MVLELNASDDRGI
Sbjct: 27 DILSTISGFLAQNRLPHLLFYGPPGTGKTSTILACARKLYSTTQFNSMVLELNASDDRGI 86
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
G+VR+QI FAST+T+ +KLIILDEADAMT DAQNALRR++EKF N RFC+ICNYL
Sbjct: 87 GVVRNQILSFASTRTIFNKGFKLIILDEADAMTKDAQNALRRVMEKFMENTRFCLICNYL 146
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+KI PAIQSRCTRFRFGPL + I SRL+Y
Sbjct: 147 TKIIPAIQSRCTRFRFGPLTTDKISSRLEY 176
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 131/194 (67%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EKF N RFC+ICNYL+KI PAIQSRCTRFRFGPL + I SRL+Y+I+ E++NVT DG
Sbjct: 130 MEKFMENTRFCLICNYLTKIIPAIQSRCTRFRFGPLTTDKISSRLEYIIKVEQLNVTEDG 189
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-------VSRVEKYRPS---- 109
A++ L++GDMRK LNILQS++ A+ +EV+ED ++ + ++ K+ +
Sbjct: 190 LNALVTLANGDMRKALNILQSSSMAY-NEVDEDGVYKCTGRPRRDDIKKIMKWMLNEDYT 248
Query: 110 ----TLDEL-----VSHQDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
++ EL ++ QDII I + P ++ + L+ K++DIE+RLA+GTSEK+
Sbjct: 249 TAYRSIMELNMTTSMALQDIIEQIHLFVHEVHFPVAVRIYLLDKLADIEHRLASGTSEKL 308
Query: 154 QLSALIAAFNSARD 167
QL +L++AF AR+
Sbjct: 309 QLGSLVSAFQHARN 322
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 133/251 (52%), Gaps = 66/251 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +LD+L+SH+DI+STI L + + + L G + S ++A
Sbjct: 11 VEKYRPESLDDLISHEDILSTISG--------FLAQNRLPHLLFYGPPGTGKTSTILACA 62
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
+++ + VLELNASDDRGIG+VR+QI FAST+T+ +KLIILDEADAMT DA
Sbjct: 63 RKLYSTTQFNSMVLELNASDDRGIGVVRNQILSFASTRTIFNKGFKLIILDEADAMTKDA 122
Query: 219 QNALRR-----------------------------------------------------K 225
QNALRR +
Sbjct: 123 QNALRRVMEKFMENTRFCLICNYLTKIIPAIQSRCTRFRFGPLTTDKISSRLEYIIKVEQ 182
Query: 226 LPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
L VT DG A++ L++GDMRK LNILQS++ A+ +EV+ED VY G P + +I I++W
Sbjct: 183 LNVTEDGLNALVTLANGDMRKALNILQSSSMAY-NEVDEDGVYKCTGRPRRDDIKKIMKW 241
Query: 286 LLNESMDLCYK 296
+LNE Y+
Sbjct: 242 MLNEDYTTAYR 252
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 53/76 (69%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I E+ + +AL DI+ +I L VH + P ++ + L+ K++DIE+RLA+GTSEK+QL
Sbjct: 251 YRSIMELNMTTSMALQDIIEQIHLFVHEVHFPVAVRIYLLDKLADIEHRLASGTSEKLQL 310
Query: 513 SALIAAFNSARDKLEA 528
+L++AF AR+ + A
Sbjct: 311 GSLVSAFQHARNIVAA 326
>gi|443714846|gb|ELU07083.1| hypothetical protein CAPTEDRAFT_164264 [Capitella teleta]
Length = 333
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 110/150 (73%), Positives = 125/150 (83%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RF+ E LPHLLFYGPPGTGKTTTILA A+++Y +FN+MVLELNASDDRGI
Sbjct: 31 DIISTIGRFVKEERLPHLLFYGPPGTGKTTTILAVAKQIYAPKEFNSMVLELNASDDRGI 90
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
GIVRD+I FAST+T+ KS +KL+ILDEADAMTNDAQNALRR+IEKFT N RFCIICNYL
Sbjct: 91 GIVRDRILSFASTRTLFKSGFKLVILDEADAMTNDAQNALRRVIEKFTENTRFCIICNYL 150
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL + RL Y
Sbjct: 151 SKIIPALQSRCTRFRFGPLLPEQMKPRLQY 180
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 120/194 (61%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFCIICNYLSKI PA+QSRCTRFRFGPL + RL YVIEQEK+ V+ DG
Sbjct: 134 IEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLLPEQMKPRLQYVIEQEKLTVSEDG 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL----LVSRVEKYRPSTLDE--- 113
A++ L++GDMR+ LNILQS + A DEV E T++T L S +E L+E
Sbjct: 194 MDALVTLANGDMRRSLNILQSCSMAF-DEVTEHTVYTCVGHPLRSDIEHIVKWMLNESFT 252
Query: 114 --------------------LVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
L + I+ P ++ + L+ KM+D+E+RLA+GTSE I
Sbjct: 253 EAYKNILEMQTAKGLALNDVLTEVHHYVHRIDFPMNVRIHLLEKMADVEHRLASGTSESI 312
Query: 154 QLSALIAAFNSARD 167
QLS+L+AAF ARD
Sbjct: 313 QLSSLVAAFQVARD 326
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/250 (42%), Positives = 137/250 (54%), Gaps = 64/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD+L+SH+DIISTI + E L L+ + GT + + A+
Sbjct: 15 VEKYRPQKLDDLISHKDIISTIGRFVKEERLPHLL-------FYGPPGTGKTTTILAVAK 67
Query: 161 AFNSARD-KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
+ ++ VLELNASDDRGIGIVRD+I FAST+T+ KS +KL+ILDEADAMTNDAQ
Sbjct: 68 QIYAPKEFNSMVLELNASDDRGIGIVRDRILSFASTRTLFKSGFKLVILDEADAMTNDAQ 127
Query: 220 NALRR-----------------------------------------------------KL 226
NALRR KL
Sbjct: 128 NALRRVIEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLLPEQMKPRLQYVIEQEKL 187
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
V+ DG A++ L++GDMR+ LNILQS + A DEV E TVY VG+P +++I +I++W+
Sbjct: 188 TVSEDGMDALVTLANGDMRRSLNILQSCSMAF-DEVTEHTVYTCVGHPLRSDIEHIVKWM 246
Query: 287 LNESMDLCYK 296
LNES YK
Sbjct: 247 LNESFTEAYK 256
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 55/72 (76%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I E++ KGLAL D+LTE+ VHR++ P ++ + L+ KM+D+E+RLA+GTSE IQL
Sbjct: 255 YKNILEMQTAKGLALNDVLTEVHHYVHRIDFPMNVRIHLLEKMADVEHRLASGTSESIQL 314
Query: 513 SALIAAFNSARD 524
S+L+AAF ARD
Sbjct: 315 SSLVAAFQVARD 326
>gi|389615147|dbj|BAM20564.1| replication factor C subunit 3 [Papilio polytes]
Length = 184
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 112/148 (75%), Positives = 127/148 (85%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +F+ EN+LPHLLFYGPPGTGKT+TILACAR++YT QFN+MVLELNASDDRGI
Sbjct: 29 DIIKTIGQFMKENQLPHLLFYGPPGTGKTSTILACARQMYTPQQFNSMVLELNASDDRGI 88
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
GIVR QI FAST+T+ K+ KLIILDEADAMTNDAQNALRRIIEK+T NVRFCIICNYL
Sbjct: 89 GIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYL 148
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI PA+QSRCTRFRF PL + I+ RL
Sbjct: 149 GKIIPALQSRCTRFRFAPLQHAQIVPRL 176
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/131 (52%), Positives = 80/131 (61%), Gaps = 22/131 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
V KYRPS L+ LVSH DII TI +K + + + L G + S ++A
Sbjct: 13 VXKYRPSKLEXLVSHDDIIKTI--------GQFMKENQLPHLLFYGPPGTGKTSTILACA 64
Query: 162 --------FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADA 213
FNS VLELNASDDRGIGIVR QI FAST+T+ K+ KLIILDEADA
Sbjct: 65 RQMYTPQQFNSM-----VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADA 119
Query: 214 MTNDAQNALRR 224
MTNDAQNALRR
Sbjct: 120 MTNDAQNALRR 130
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 43/53 (81%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEK 53
IEK+T NVRFCIICNYL KI PA+QSRCTRFRF PL + I+ RL ++E+EK
Sbjct: 132 IEKYTDNVRFCIICNYLGKIIPALQSRCTRFRFAPLQHAQIVPRLRDIVEKEK 184
>gi|195473665|ref|XP_002089113.1| GE18941 [Drosophila yakuba]
gi|194175214|gb|EDW88825.1| GE18941 [Drosophila yakuba]
Length = 332
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 109/144 (75%), Positives = 124/144 (86%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I RFI +LPHLLFYGPPGTGKT+TILACAR+LY+ QF +MVLELNASDDRGIGIVR
Sbjct: 35 ITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQFKSMVLELNASDDRGIGIVRG 94
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+T+ ++KLIILDEADAMTNDAQNALRRIIEK+T NVRFC+ICNYLSKI P
Sbjct: 95 QILNFASTRTIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIP 154
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLD 440
A+QSRCTRFRF PL + +M RL+
Sbjct: 155 ALQSRCTRFRFAPLSQNQMMPRLE 178
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 118/195 (60%), Gaps = 29/195 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFC+ICNYLSKI PA+QSRCTRFRF PL + +M RL+ +IE E V +T DG
Sbjct: 133 IEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQNQMMPRLEKIIEAEAVQITDDG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
K+A++ L+ GDMRKVLN+LQS A D VNED ++ + + + L L+S
Sbjct: 193 KRALLTLAKGDMRKVLNVLQSTVMAF-DTVNEDNVYMCVGYPLRQDIEQILKALLSGNSL 251
Query: 118 ------------------QDIIST-------IEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+DII+ +E+P S++ L++K++ IE RLA G +E
Sbjct: 252 EDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGCTEV 311
Query: 153 IQLSALIAAFNSARD 167
Q +AL+AAF RD
Sbjct: 312 AQTAALVAAFFICRD 326
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 124/243 (51%), Gaps = 66/243 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRPS LD+L+SH++IISTI + + + L G + S ++A
Sbjct: 14 VEKYRPSGLDDLISHEEIISTI--------TRFISRKQLPHLLFYGPPGTGKTSTILACA 65
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
++ + K VLELNASDDRGIGIVR QI FAST+T+ ++KLIILDEADAMTNDA
Sbjct: 66 RQLYSPQQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDA 125
Query: 219 QNALRRKL---------------------------------PVT-----PDGKKAI---- 236
QNALRR + P++ P +K I
Sbjct: 126 QNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQNQMMPRLEKIIEAEA 185
Query: 237 IDLSDGDMRKVL-----------NILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
+ ++D R +L N+LQS A D VNED VY VGYP + +I IL+
Sbjct: 186 VQITDDGKRALLTLAKGDMRKVLNVLQSTVMAF-DTVNEDNVYMCVGYPLRQDIEQILKA 244
Query: 286 LLN 288
LL+
Sbjct: 245 LLS 247
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++ K +GLAL DI+TE+ L V RLE+P S++ L++K++ IE RLA G +E Q +AL
Sbjct: 258 VESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGCTEVAQTAAL 317
Query: 516 IAAFNSARD 524
+AAF RD
Sbjct: 318 VAAFFICRD 326
>gi|19921076|ref|NP_609399.1| replication factor C subunit 3 [Drosophila melanogaster]
gi|195339815|ref|XP_002036512.1| GM18361 [Drosophila sechellia]
gi|195578201|ref|XP_002078954.1| GD23698 [Drosophila simulans]
gi|7533196|gb|AAF63387.1|AF247499_1 replication factor C subunit 3 [Drosophila melanogaster]
gi|21430740|gb|AAM51048.1| SD11293p [Drosophila melanogaster]
gi|22946159|gb|AAF52944.2| replication factor C subunit 3 [Drosophila melanogaster]
gi|194130392|gb|EDW52435.1| GM18361 [Drosophila sechellia]
gi|194190963|gb|EDX04539.1| GD23698 [Drosophila simulans]
gi|220950744|gb|ACL87915.1| RfC3-PA [synthetic construct]
gi|220959368|gb|ACL92227.1| RfC3-PA [synthetic construct]
Length = 332
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 109/144 (75%), Positives = 123/144 (85%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I RFI +LPHLLFYGPPGTGKT+TILACAR+LY+ QF +MVLELNASDDRGIGIVR
Sbjct: 35 ITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQFKSMVLELNASDDRGIGIVRG 94
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+T+ ++KLIILDEADAMTNDAQNALRRIIEK+T NVRFC+ICNYLSKI P
Sbjct: 95 QILNFASTRTIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIP 154
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLD 440
A+QSRCTRFRF PL +M RL+
Sbjct: 155 ALQSRCTRFRFAPLSQDQMMPRLE 178
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 117/195 (60%), Gaps = 29/195 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFC+ICNYLSKI PA+QSRCTRFRF PL +M RL+ +IE E V +T DG
Sbjct: 133 IEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
K+A++ L+ GDMRKVLN+LQS A D VNED ++ + + + L L+S
Sbjct: 193 KRALLTLAKGDMRKVLNVLQSTVMAF-DTVNEDNVYMCVGYPLRQDIEQILKALLSGSSL 251
Query: 118 ------------------QDIIST-------IEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+DII+ +E+P S++ L++K++ IE RLA G +E
Sbjct: 252 EDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGCTEV 311
Query: 153 IQLSALIAAFNSARD 167
Q +AL+AAF RD
Sbjct: 312 AQTAALVAAFFICRD 326
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 130/245 (53%), Gaps = 66/245 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRPS LD+L+SH++IISTI + + + L G + S ++A
Sbjct: 14 VEKYRPSGLDDLISHEEIISTI--------TRFISRKQLPHLLFYGPPGTGKTSTILACA 65
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
++ + K VLELNASDDRGIGIVR QI FAST+T+ ++KLIILDEADAMTNDA
Sbjct: 66 RQLYSPQQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDA 125
Query: 219 QNALRRKL---------------------------------PVTPD-------------- 231
QNALRR + P++ D
Sbjct: 126 QNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEA 185
Query: 232 ------GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
GK+A++ L+ GDMRKVLN+LQS A D VNED VY VGYP + +I IL+
Sbjct: 186 VQITEDGKRALLTLAKGDMRKVLNVLQSTVMAF-DTVNEDNVYMCVGYPLRQDIEQILKA 244
Query: 286 LLNES 290
LL+ S
Sbjct: 245 LLSGS 249
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++ K +GLAL DI+TE+ L V RLE+P S++ L++K++ IE RLA G +E Q +AL
Sbjct: 258 VESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGCTEVAQTAAL 317
Query: 516 IAAFNSARD 524
+AAF RD
Sbjct: 318 VAAFFICRD 326
>gi|194859928|ref|XP_001969482.1| GG10129 [Drosophila erecta]
gi|190661349|gb|EDV58541.1| GG10129 [Drosophila erecta]
Length = 332
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 109/144 (75%), Positives = 123/144 (85%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I RFI +LPHLLFYGPPGTGKT+TILACAR+LY+ QF +MVLELNASDDRGIGIVR
Sbjct: 35 ITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQFKSMVLELNASDDRGIGIVRG 94
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+T+ ++KLIILDEADAMTNDAQNALRRIIEK+T NVRFC+ICNYLSKI P
Sbjct: 95 QILNFASTRTIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIP 154
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLD 440
A+QSRCTRFRF PL +M RL+
Sbjct: 155 ALQSRCTRFRFAPLSQDQMMPRLE 178
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 86/195 (44%), Positives = 117/195 (60%), Gaps = 29/195 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFC+ICNYLSKI PA+QSRCTRFRF PL +M RL+ +IE E V +T DG
Sbjct: 133 IEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITDDG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
K+A++ L+ GDMRKVLN+LQS A D VNED ++ + + + L L+S
Sbjct: 193 KRALLTLAKGDMRKVLNVLQSTVMAF-DTVNEDNVYMCVGYPLRQDIEQILKALLSGNSL 251
Query: 118 ------------------QDIIST-------IEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+DII+ +E+P S++ L++K++ IE RLA G +E
Sbjct: 252 EDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGCTEV 311
Query: 153 IQLSALIAAFNSARD 167
Q +AL+AAF RD
Sbjct: 312 AQTAALVAAFFICRD 326
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 129/243 (53%), Gaps = 66/243 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRPS LD+L+SH++IISTI + + + L G + S ++A
Sbjct: 14 VEKYRPSGLDDLISHEEIISTI--------TRFISRKQLPHLLFYGPPGTGKTSTILACA 65
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
++ + K VLELNASDDRGIGIVR QI FAST+T+ ++KLIILDEADAMTNDA
Sbjct: 66 RQLYSPQQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDA 125
Query: 219 QNALRRKL---------------------------------PVTPD-------------- 231
QNALRR + P++ D
Sbjct: 126 QNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEA 185
Query: 232 ------GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
GK+A++ L+ GDMRKVLN+LQS A D VNED VY VGYP + +I IL+
Sbjct: 186 VQITDDGKRALLTLAKGDMRKVLNVLQSTVMAF-DTVNEDNVYMCVGYPLRQDIEQILKA 244
Query: 286 LLN 288
LL+
Sbjct: 245 LLS 247
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++ K +GLAL DI+TE+ L V RLE+P S++ L++K++ IE RLA G +E Q +AL
Sbjct: 258 VESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGCTEVAQTAAL 317
Query: 516 IAAFNSARD 524
+AAF RD
Sbjct: 318 VAAFFICRD 326
>gi|194761822|ref|XP_001963122.1| GF15785 [Drosophila ananassae]
gi|190616819|gb|EDV32343.1| GF15785 [Drosophila ananassae]
Length = 332
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 109/144 (75%), Positives = 124/144 (86%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I+RFI +LPHLLFYGPPGTGKT+TILACAR+LY+ QF +MVLELNASDDRGIGIVR
Sbjct: 35 ISRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQFKSMVLELNASDDRGIGIVRG 94
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+T+ ++KLIILDEADAMTNDAQNALRRIIEK+T NVRFC+ICNYLSKI P
Sbjct: 95 QILNFASTRTIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIP 154
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLD 440
A+QSRCTRFRF PL +M RL+
Sbjct: 155 ALQSRCTRFRFAPLSPDQMMPRLE 178
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 131/243 (53%), Gaps = 66/243 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRPS LD+L+SH++IISTI + + + L G + S ++A
Sbjct: 14 VEKYRPSGLDDLISHEEIISTI--------SRFISRKQLPHLLFYGPPGTGKTSTILACA 65
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
++ + K VLELNASDDRGIGIVR QI FAST+T+ ++KLIILDEADAMTNDA
Sbjct: 66 RQLYSPQQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDA 125
Query: 219 QNALRRKL---------------------------------PVTP--------------- 230
QNALRR + P++P
Sbjct: 126 QNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSPDQMMPRLEKIIDAEA 185
Query: 231 -----DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
DGK+A++ L+ GDMRKVLN+LQS A D+VNED VY VGYP + +I IL+
Sbjct: 186 VQITEDGKRALLTLAKGDMRKVLNVLQSTVMAF-DKVNEDNVYTCVGYPLRQDIEQILKA 244
Query: 286 LLN 288
LL+
Sbjct: 245 LLS 247
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 119/195 (61%), Gaps = 29/195 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFC+ICNYLSKI PA+QSRCTRFRF PL +M RL+ +I+ E V +T DG
Sbjct: 133 IEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSPDQMMPRLEKIIDAEAVQITEDG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL--------------------- 99
K+A++ L+ GDMRKVLN+LQS A D+VNED ++T +
Sbjct: 193 KRALLTLAKGDMRKVLNVLQSTVMAF-DKVNEDNVYTCVGYPLRQDIEQILKALLSGNSV 251
Query: 100 ------VSRVEKYRPSTLDELVSHQDI-ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
V + R L+++++ + + +E+P S++ L++K++ IE RLA G +E
Sbjct: 252 EDSFKTVENAKYARGLALEDILTELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGCTEP 311
Query: 153 IQLSALIAAFNSARD 167
Q +AL+AAF RD
Sbjct: 312 AQTAALVAAFFICRD 326
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 48/69 (69%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++ K +GLAL DILTE+ L V RLE+P S++ L++K++ IE RLA G +E Q +AL
Sbjct: 258 VENAKYARGLALEDILTELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGCTEPAQTAAL 317
Query: 516 IAAFNSARD 524
+AAF RD
Sbjct: 318 VAAFFICRD 326
>gi|256052294|ref|XP_002569709.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
Length = 337
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 133/295 (45%), Positives = 175/295 (59%), Gaps = 64/295 (21%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ RFID + LPHLLFYGPPGTGKT+TILA A++LY++ QF++MVLELNASDDRGI +VR+
Sbjct: 41 LKRFIDNDRLPHLLFYGPPGTGKTSTILAAAKRLYSR-QFSSMVLELNASDDRGIDVVRE 99
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
Q+ FASTKT+ +KL+ILDEAD+MT DAQNALRRIIEKFT N RFC+ICNYLSKI P
Sbjct: 100 QVLSFASTKTLFAGKFKLVILDEADSMTKDAQNALRRIIEKFTENTRFCLICNYLSKIIP 159
Query: 417 AIQ----------------SRCTR------------------FRFGPLD--------SSL 434
AIQ S C R ++F D S
Sbjct: 160 AIQSRCTKFRFAPLAFNDVSTCLRKIASNEGVDLTDDGVKAIYQFASGDMRKSINLLQST 219
Query: 435 IMSRLDYDDISFFNIIIW---------------------YIKIQEIKIEKGLALTDILTE 473
MS D S + + + Y I +K KG+AL DI+TE
Sbjct: 220 YMSSKTVDGPSVYACVAYPSPAEVRSLLDHVLNEPISTAYHNITAVKNLKGIALQDIITE 279
Query: 474 ISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
I L+ R+++P+ + DL++ +SDIE R++ G SE++QL A ++AF A+ LE+
Sbjct: 280 IHPLIMRIDLPDKIRCDLLIALSDIENRMSQGASERLQLGAFVSAFTRAKIALES 334
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 113/196 (57%), Gaps = 26/196 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PAIQSRCT+FRF PL + + + L + E V++T DG
Sbjct: 138 IEKFTENTRFCLICNYLSKIIPAIQSRCTKFRFAPLAFNDVSTCLRKIASNEGVDLTDDG 197
Query: 61 KKAIIDLSDGDMRKVLNILQS--------------AATAHA---------DEVNEDTIFT 97
KAI + GDMRK +N+LQS A A+ D V + I T
Sbjct: 198 VKAIYQFASGDMRKSINLLQSTYMSSKTVDGPSVYACVAYPSPAEVRSLLDHVLNEPIST 257
Query: 98 LL--VSRVEKYRPSTLDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
++ V+ + L ++++ +I I++P+ + DL++ +SDIE R++ G SE++Q
Sbjct: 258 AYHNITAVKNLKGIALQDIITEIHPLIMRIDLPDKIRCDLLIALSDIENRMSQGASERLQ 317
Query: 155 LSALIAAFNSARDKLE 170
L A ++AF A+ LE
Sbjct: 318 LGAFVSAFTRAKIALE 333
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 87/178 (48%), Gaps = 54/178 (30%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRR------ 224
VLELNASDDRGI +VR+Q+ FASTKT+ +KL+ILDEAD+MT DAQNALRR
Sbjct: 83 VLELNASDDRGIDVVREQVLSFASTKTLFAGKFKLVILDEADSMTKDAQNALRRIIEKFT 142
Query: 225 ------------------------KLPVTP-----------------------DGKKAII 237
K P DG KAI
Sbjct: 143 ENTRFCLICNYLSKIIPAIQSRCTKFRFAPLAFNDVSTCLRKIASNEGVDLTDDGVKAIY 202
Query: 238 DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCY 295
+ GDMRK +N+LQS + + V+ +VY V YP+ E+ ++L +LNE + Y
Sbjct: 203 QFASGDMRKSINLLQSTYMS-SKTVDGPSVYACVAYPSPAEVRSLLDHVLNEPISTAY 259
>gi|148233376|ref|NP_001080677.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus laevis]
gi|27882432|gb|AAH44712.1| Rfc5-prov protein [Xenopus laevis]
Length = 335
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 107/150 (71%), Positives = 127/150 (84%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RFI E++LPHLLFYGPPGTGKT+TILACA++LY +FN+MVLELNASDDRGI
Sbjct: 34 DILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYKDREFNSMVLELNASDDRGI 93
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 94 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 153
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL S +++ RL++
Sbjct: 154 SKIIPALQSRCTRFRFGPLSSDMMIPRLEH 183
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 131/194 (67%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL S +++ RL++V+++E+V+++PDG
Sbjct: 137 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSDMMIPRLEHVVKEERVDISPDG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS+GDMR+ LNILQS A+ +V EDT++T + + LD +++
Sbjct: 197 MKALVTLSNGDMRRSLNILQSTNMAYG-KVTEDTVYTCTGHPLRSDIANILDWMLNKDFT 255
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ + + P S+ + L++KM+DIEYRLA+GTSEKI
Sbjct: 256 SAYKNIMELKTLKGLALHDILTEVHLYVHRVNFPASVRMHLLVKMADIEYRLASGTSEKI 315
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF ARD
Sbjct: 316 QLSSLIAAFQVARD 329
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 131/250 (52%), Gaps = 64/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD+L+SHQDI+STI+ I E L L+ + GT + + A
Sbjct: 18 VEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLL-------FYGPPGTGKTSTILACAK 70
Query: 161 AFNSARD-KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
R+ VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT DAQ
Sbjct: 71 QLYKDREFNSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 130
Query: 220 NALRR-----------------------------------------------------KL 226
NALRR ++
Sbjct: 131 NALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSDMMIPRLEHVVKEERV 190
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
++PDG KA++ LS+GDMR+ LNILQS A+ +V EDTVY G+P +++I NIL W+
Sbjct: 191 DISPDGMKALVTLSNGDMRRSLNILQSTNMAYG-KVTEDTVYTCTGHPLRSDIANILDWM 249
Query: 287 LNESMDLCYK 296
LN+ YK
Sbjct: 250 LNKDFTSAYK 259
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 63/90 (70%), Gaps = 9/90 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTE+ L VHR+ P S+ + L++KM+DI
Sbjct: 244 NILDWMLNKDFTSAYKNIMELKTLKGLALHDILTEVHLYVHRVNFPASVRMHLLVKMADI 303
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
EYRLA+GTSEKIQLS+LIAAF ARD + A
Sbjct: 304 EYRLASGTSEKIQLSSLIAAFQVARDMVVA 333
>gi|390346340|ref|XP_003726529.1| PREDICTED: replication factor C subunit 5-like [Strongylocentrotus
purpuratus]
Length = 342
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 107/145 (73%), Positives = 125/145 (86%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I +FI ++ LPHLLFYGPPGTGKT+TILA A++LY +FN+MVLELNASDDRGIGIVR
Sbjct: 34 IQKFIKQDRLPHLLFYGPPGTGKTSTILAVAKQLYAPKEFNSMVLELNASDDRGIGIVRG 93
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
I FAST+T+ KS +KL+ILDEADAMTNDAQNALRR+IEKFT N RFC ICNYLSKI P
Sbjct: 94 SILNFASTRTIFKSGFKLVILDEADAMTNDAQNALRRVIEKFTENTRFCFICNYLSKIIP 153
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
A+QSRCTRFRFGPLD+ I+ RL++
Sbjct: 154 ALQSRCTRFRFGPLDNQQIVPRLEF 178
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 116/181 (64%), Gaps = 28/181 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC ICNYLSKI PA+QSRCTRFRFGPLD+ I+ RL++V+ +E V++T DG
Sbjct: 132 IEKFTENTRFCFICNYLSKIIPALQSRCTRFRFGPLDNQQIVPRLEFVVREENVDMTEDG 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI-----------------------FT 97
KKA+I L+ GDMR+V+NILQS + AH ++V E+ + FT
Sbjct: 192 KKALITLAKGDMRRVINILQSTSMAH-EKVTEENVYLCTGHPLRTDIENIVNWMLNEDFT 250
Query: 98 LLVSRVEKYRP----STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ + + + + LD L+ + IE P+ + + L+ KMSDIEYRLAAGTSEK+
Sbjct: 251 AAFNHINQLKTLKGLALLDILLEVHTYVHRIEFPQKVRIYLLDKMSDIEYRLAAGTSEKL 310
Query: 154 Q 154
Q
Sbjct: 311 Q 311
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 124/255 (48%), Gaps = 76/255 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP++LD+L+SH +II+TI+ +K + + L G + S ++A
Sbjct: 13 VEKYRPNSLDDLISHTEIINTIQ--------KFIKQDRLPHLLFYGPPGTGKTSTILAVA 64
Query: 162 --------FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADA 213
FNS VLELNASDDRGIGIVR I FAST+T+ KS +KL+ILDEADA
Sbjct: 65 KQLYAPKEFNSM-----VLELNASDDRGIGIVRGSILNFASTRTIFKSGFKLVILDEADA 119
Query: 214 MTNDAQNALRR------------------------------KLPVTPDGKKAI------- 236
MTNDAQNALRR + P + I
Sbjct: 120 MTNDAQNALRRVIEKFTENTRFCFICNYLSKIIPALQSRCTRFRFGPLDNQQIVPRLEFV 179
Query: 237 -----IDLSDGDMRKVLNILQSA----------ATAHADE-VNEDTVYNSVGYPTKTEIT 280
+D+++ D +K L L +T+ A E V E+ VY G+P +T+I
Sbjct: 180 VREENVDMTE-DGKKALITLAKGDMRRVINILQSTSMAHEKVTEENVYLCTGHPLRTDIE 238
Query: 281 NILRWLLNESMDLCY 295
NI+ W+LNE +
Sbjct: 239 NIVNWMLNEDFTAAF 253
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 48/73 (65%), Gaps = 9/73 (12%)
Query: 448 NIIIWYI---------KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W + I ++K KGLAL DIL E+ VHR+E P+ + + L+ KMSDI
Sbjct: 239 NIVNWMLNEDFTAAFNHINQLKTLKGLALLDILLEVHTYVHRIEFPQKVRIYLLDKMSDI 298
Query: 499 EYRLAAGTSEKIQ 511
EYRLAAGTSEK+Q
Sbjct: 299 EYRLAAGTSEKLQ 311
>gi|405974676|gb|EKC39302.1| Replication factor C subunit 5 [Crassostrea gigas]
Length = 336
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 112/179 (62%), Positives = 135/179 (75%), Gaps = 10/179 (5%)
Query: 273 YPTKTEITNILRWL----------LNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTT 322
YPT L W+ L D+ I++F+ E+ LPHLLFYGPPGTGKT+T
Sbjct: 6 YPTTDRNNPNLPWVEKYRPKQLDELISHKDIISTIDKFVKEDRLPHLLFYGPPGTGKTST 65
Query: 323 ILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADA 382
ILA A+++Y+ +FN+MVLELNASDDRGIGIVR QI FAST+T+ KS YK++ILDEADA
Sbjct: 66 ILAVAKQIYSPKEFNSMVLELNASDDRGIGIVRGQILSFASTRTIFKSGYKIVILDEADA 125
Query: 383 MTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
MT DAQNALRR+IEKFT N RFCIICNYLSKI PA+QSRCTRFRFGPL + ++ RL +
Sbjct: 126 MTRDAQNALRRVIEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLGTDQMVPRLQH 184
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/194 (47%), Positives = 130/194 (67%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFCIICNYLSKI PA+QSRCTRFRFGPL + ++ RL +VI+QE+ NVT DG
Sbjct: 138 IEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLGTDQMVPRLQHVIQQEQCNVTEDG 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ L++GDMRK LNILQS AH D VNED ++T + + + + ++ +++
Sbjct: 198 MKALVTLANGDMRKALNILQSTHMAH-DVVNEDNVYTCVGHPLRRDIENIINWVLNENFT 256
Query: 118 -----------------QDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
QDI++ + ++P ++ + L+ KM+++E+RLA+GT+EKI
Sbjct: 257 SAYNNILEMKTEKGLALQDILTEVHTYVHRLDLPINVKIHLLDKMAEVEHRLASGTNEKI 316
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF ARD
Sbjct: 317 QLSSLIAAFQVARD 330
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/255 (42%), Positives = 132/255 (51%), Gaps = 76/255 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LDEL+SH+DIISTI D +K + + L G + S ++A
Sbjct: 19 VEKYRPKQLDELISHKDIISTI--------DKFVKEDRLPHLLFYGPPGTGKTSTILAVA 70
Query: 162 --------FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADA 213
FNS VLELNASDDRGIGIVR QI FAST+T+ KS YK++ILDEADA
Sbjct: 71 KQIYSPKEFNSM-----VLELNASDDRGIGIVRGQILSFASTRTIFKSGYKIVILDEADA 125
Query: 214 MTNDAQNALRRKL---------------------------------PVTPD--------- 231
MT DAQNALRR + P+ D
Sbjct: 126 MTRDAQNALRRVIEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLGTDQMVPRLQHV 185
Query: 232 -----------GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEIT 280
G KA++ L++GDMRK LNILQS AH D VNED VY VG+P + +I
Sbjct: 186 IQQEQCNVTEDGMKALVTLANGDMRKALNILQSTHMAH-DVVNEDNVYTCVGHPLRRDIE 244
Query: 281 NILRWLLNESMDLCY 295
NI+ W+LNE+ Y
Sbjct: 245 NIINWVLNENFTSAY 259
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 62/86 (72%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NII W Y I E+K EKGLAL DILTE+ VHRL++P ++ + L+ KM+++
Sbjct: 245 NIINWVLNENFTSAYNNILEMKTEKGLALQDILTEVHTYVHRLDLPINVKIHLLDKMAEV 304
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
E+RLA+GT+EKIQLS+LIAAF ARD
Sbjct: 305 EHRLASGTNEKIQLSSLIAAFQVARD 330
>gi|242019775|ref|XP_002430334.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212515458|gb|EEB17596.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 340
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 110/145 (75%), Positives = 121/145 (83%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I + I +LPHLLFYGPPGTGKTTTILACA+ LYT AQF +MVLELNASDDRGIG VR
Sbjct: 37 IRKLISHKQLPHLLFYGPPGTGKTTTILACAKVLYTPAQFASMVLELNASDDRGIGTVRG 96
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
I FASTKTM + KLIILDEADAMT+DAQNALRRI+EK+T NVRFCIICNYL KI P
Sbjct: 97 AILDFASTKTMFQGGVKLIILDEADAMTHDAQNALRRIMEKYTANVRFCIICNYLGKIIP 156
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
AIQSRCT+FRF PLDS I+ RL+Y
Sbjct: 157 AIQSRCTKFRFAPLDSKEILPRLEY 181
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 120/193 (62%), Gaps = 28/193 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T NVRFCIICNYL KI PAIQSRCT+FRF PLDS I+ RL+YVIEQEK+ ++ DG
Sbjct: 135 MEKYTANVRFCIICNYLGKIIPAIQSRCTKFRFAPLDSKEILPRLEYVIEQEKIKISDDG 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL--------------------- 99
K+A++ L GDMRKVLNILQS + + EVNE+ ++T +
Sbjct: 195 KQAVLTLGQGDMRKVLNILQSTFVSFS-EVNEENVYTCVGHPLQCDIFEMLQSLLNDNLS 253
Query: 100 -----VSRVEKYRPSTLDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ ++ + L ++V+ + +E+P ++ L++ +SDIEY L G+SE I
Sbjct: 254 DSYKKIQTIKTLKGLALSDIVTELHTWVHKLELPSKVVCLLLISLSDIEYNLNNGSSENI 313
Query: 154 QLSALIAAFNSAR 166
+L L++AF AR
Sbjct: 314 ELGKLLSAFYKAR 326
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 126/250 (50%), Gaps = 64/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD+L+S I++TI I L L+ + GT + + A
Sbjct: 16 VEKYRPQKLDDLISQDYIVNTIRKLISHKQLPHLL-------FYGPPGTGKTTTILACAK 68
Query: 161 A-FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
+ A+ VLELNASDDRGIG VR I FASTKTM + KLIILDEADAMT+DAQ
Sbjct: 69 VLYTPAQFASMVLELNASDDRGIGTVRGAILDFASTKTMFQGGVKLIILDEADAMTHDAQ 128
Query: 220 NALRR-----------------------------------------------------KL 226
NALRR K+
Sbjct: 129 NALRRIMEKYTANVRFCIICNYLGKIIPAIQSRCTKFRFAPLDSKEILPRLEYVIEQEKI 188
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
++ DGK+A++ L GDMRKVLNILQS + + EVNE+ VY VG+P + +I +L+ L
Sbjct: 189 KISDDGKQAVLTLGQGDMRKVLNILQSTFVSFS-EVNEENVYTCVGHPLQCDIFEMLQSL 247
Query: 287 LNESMDLCYK 296
LN+++ YK
Sbjct: 248 LNDNLSDSYK 257
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 51/71 (71%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y KIQ IK KGLAL+DI+TE+ VH+LE+P ++ L++ +SDIEY L G+SE I+L
Sbjct: 256 YKKIQTIKTLKGLALSDIVTELHTWVHKLELPSKVVCLLLISLSDIEYNLNNGSSENIEL 315
Query: 513 SALIAAFNSAR 523
L++AF AR
Sbjct: 316 GKLLSAFYKAR 326
>gi|198476564|ref|XP_002132399.1| GA25212 [Drosophila pseudoobscura pseudoobscura]
gi|198137754|gb|EDY69801.1| GA25212 [Drosophila pseudoobscura pseudoobscura]
Length = 333
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 110/144 (76%), Positives = 124/144 (86%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
INRFI + +LPHLLFYGPPGTGKT+TILACAR+LY A F +MVLELNASDDRGIGIVR
Sbjct: 35 INRFISQKQLPHLLFYGPPGTGKTSTILACARQLYPPALFKSMVLELNASDDRGIGIVRG 94
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+T+ ++KLIILDEADAMTNDAQNALRRIIEK+T NVRFCIICNYLSKI P
Sbjct: 95 QILNFASTRTIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIP 154
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLD 440
A+QSRCTRFRF PL ++ RL+
Sbjct: 155 ALQSRCTRFRFAPLSPDKMIPRLE 178
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 129/243 (53%), Gaps = 66/243 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +LD+L+SH +II TI + + + + L G + S ++A
Sbjct: 14 VEKYRPYSLDDLISHDEIILTI--------NRFISQKQLPHLLFYGPPGTGKTSTILACA 65
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
+ A K VLELNASDDRGIGIVR QI FAST+T+ ++KLIILDEADAMTNDA
Sbjct: 66 RQLYPPALFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDA 125
Query: 219 QNALRRKL---------------------------------PVTPD-------------- 231
QNALRR + P++PD
Sbjct: 126 QNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDKMIPRLEQIVQSED 185
Query: 232 ------GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
GKKA++ LS GDMRKVLN+LQS A A D VNED VY GYP + +I NIL+
Sbjct: 186 IKITENGKKALLTLSKGDMRKVLNVLQSTAMAF-DVVNEDNVYMCAGYPLRQDIENILKA 244
Query: 286 LLN 288
LL+
Sbjct: 245 LLS 247
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 114/195 (58%), Gaps = 29/195 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYLSKI PA+QSRCTRFRF PL ++ RL+ +++ E + +T +G
Sbjct: 133 IEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDKMIPRLEQIVQSEDIKITENG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQD- 119
KKA++ LS GDMRKVLN+LQS A A D VNED ++ + + + L L+S +
Sbjct: 193 KKALLTLSKGDMRKVLNVLQSTAMAF-DVVNEDNVYMCAGYPLRQDIENILKALLSGHNF 251
Query: 120 ---------------------------IISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
I+ +E P S++ +LV+K++ IE RL G ++
Sbjct: 252 EVSFQNVDVAKSARGLALEDIITELHLIVMRLEFPISVMNELVVKLAHIEERLTKGCTDI 311
Query: 153 IQLSALIAAFNSARD 167
+AL++AF RD
Sbjct: 312 ANTAALVSAFFICRD 326
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 444 ISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLA 503
+S N + + + K +GLAL DI+TE+ L+V RLE P S++ +LV+K++ IE RL
Sbjct: 246 LSGHNFEVSFQNVDVAKSARGLALEDIITELHLIVMRLEFPISVMNELVVKLAHIEERLT 305
Query: 504 AGTSEKIQLSALIAAFNSARD 524
G ++ +AL++AF RD
Sbjct: 306 KGCTDIANTAALVSAFFICRD 326
>gi|327276150|ref|XP_003222833.1| PREDICTED: replication factor C subunit 5-like [Anolis
carolinensis]
Length = 342
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 106/150 (70%), Positives = 125/150 (83%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLLFYGPPGTGKT+TILACA++LY +FN+MVLELNASDDRGI
Sbjct: 41 DILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACAKQLYKDKEFNSMVLELNASDDRGI 100
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
GIVR I FAST+T+ K +KL+ILDEADAMT +AQNALRR+IEKFT N RFC+ICNYL
Sbjct: 101 GIVRGPILSFASTRTIFKKGFKLVILDEADAMTQEAQNALRRVIEKFTENTRFCLICNYL 160
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL +
Sbjct: 161 SKIIPALQSRCTRFRFGPLTPELMVPRLKH 190
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 124/194 (63%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL +VIE EKV+V+ DG
Sbjct: 144 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLKHVIESEKVDVSDDG 203
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS+GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 204 MKALVTLSNGDMRRSLNILQSTNMAFG-KVTEETVYTCTGQPLKSDIANILDWMLNQDFT 262
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L++KM+DIE+RLAAGTSEKI
Sbjct: 263 AAYHNIMELKTLKGLALHDILTEIHLFVHRVDFPPSVRIQLLIKMADIEHRLAAGTSEKI 322
Query: 154 QLSALIAAFNSARD 167
QL AL+ AF RD
Sbjct: 323 QLGALVGAFQVTRD 336
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 104/254 (40%), Positives = 130/254 (51%), Gaps = 74/254 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+ + GT + + A
Sbjct: 25 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLL-------FYGPPGTGKTSTILACAK 77
Query: 161 A------FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 214
FNS VLELNASDDRGIGIVR I FAST+T+ K +KL+ILDEADAM
Sbjct: 78 QLYKDKEFNSM-----VLELNASDDRGIGIVRGPILSFASTRTIFKKGFKLVILDEADAM 132
Query: 215 TNDAQNALRRKL---------------------------------PVTP----------- 230
T +AQNALRR + P+TP
Sbjct: 133 TQEAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLKHVI 192
Query: 231 ---------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITN 281
DG KA++ LS+GDMR+ LNILQS A +V E+TVY G P K++I N
Sbjct: 193 ESEKVDVSDDGMKALVTLSNGDMRRSLNILQSTNMAFG-KVTEETVYTCTGQPLKSDIAN 251
Query: 282 ILRWLLNESMDLCY 295
IL W+LN+ Y
Sbjct: 252 ILDWMLNQDFTAAY 265
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 61/90 (67%), Gaps = 9/90 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L++KM+DI
Sbjct: 251 NILDWMLNQDFTAAYHNIMELKTLKGLALHDILTEIHLFVHRVDFPPSVRIQLLIKMADI 310
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
E+RLAAGTSEKIQL AL+ AF RD + A
Sbjct: 311 EHRLAAGTSEKIQLGALVGAFQVTRDLIAA 340
>gi|346472797|gb|AEO36243.1| hypothetical protein [Amblyomma maculatum]
Length = 327
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 105/150 (70%), Positives = 127/150 (84%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RFI E+ LPHLLFYGPPGTGKT+TILACA+++Y+ +F + VLELNASDDRGI
Sbjct: 29 DIISTIGRFIKEDRLPHLLFYGPPGTGKTSTILACAQQIYSPKEFTSKVLELNASDDRGI 88
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
GIVR +I FASTKT+ + +KLI+LDEADAMTNDAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 89 GIVRGEILSFASTKTIFNTGFKLIVLDEADAMTNDAQNALRRVIEKFTENARFCLICNYL 148
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL ++ + R+D+
Sbjct: 149 SKIIPALQSRCTRFRFGPLSTAQMSPRIDH 178
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/196 (48%), Positives = 129/196 (65%), Gaps = 34/196 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL ++ + R+D+VI QE++ VT DG
Sbjct: 132 IEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSTAQMSPRIDHVITQERLTVTADG 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI-----------------------FT 97
KKA++DL+ GDMRK LNILQS + A + EVNE + FT
Sbjct: 192 KKALMDLAQGDMRKALNILQSTSMAFS-EVNETNVYLCVGQPLKEDISDIVSTLLNEDFT 250
Query: 98 LLVSRVEKYRPSTLDELVSHQDIIST-------IEIPESMLVDLVLKMSDIEYRLAAGTS 150
S + K + + + ++ QD+++ IE+P+ + + L+ KM++IEYRLAAGTS
Sbjct: 251 YCYSHISKLK---VGKGLALQDVLTQVHLYVHRIELPDQVKMRLIDKMAEIEYRLAAGTS 307
Query: 151 EKIQLSALIAAFNSAR 166
EKIQLS+LI+AF AR
Sbjct: 308 EKIQLSSLISAFQVAR 323
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 107/249 (42%), Positives = 133/249 (53%), Gaps = 64/249 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD+L++H+DIISTI I E L L+ + GT + + A
Sbjct: 13 VEKYRPQKLDDLIAHEDIISTIGRFIKEDRLPHLL-------FYGPPGTGKTSTILACAQ 65
Query: 161 AFNSARD-KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
S ++ +VLELNASDDRGIGIVR +I FASTKT+ + +KLI+LDEADAMTNDAQ
Sbjct: 66 QIYSPKEFTSKVLELNASDDRGIGIVRGEILSFASTKTIFNTGFKLIVLDEADAMTNDAQ 125
Query: 220 NALRR-----------------------------------------------------KL 226
NALRR +L
Sbjct: 126 NALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSTAQMSPRIDHVITQERL 185
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
VT DGKKA++DL+ GDMRK LNILQS + A + EVNE VY VG P K +I++I+ L
Sbjct: 186 TVTADGKKALMDLAQGDMRKALNILQSTSMAFS-EVNETNVYLCVGQPLKEDISDIVSTL 244
Query: 287 LNESMDLCY 295
LNE CY
Sbjct: 245 LNEDFTYCY 253
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 68/93 (73%), Gaps = 5/93 (5%)
Query: 431 DSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVD 490
D S I+S L +D ++ Y I ++K+ KGLAL D+LT++ L VHR+E+P+ + +
Sbjct: 236 DISDIVSTLLNEDFTY-----CYSHISKLKVGKGLALQDVLTQVHLYVHRIELPDQVKMR 290
Query: 491 LVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
L+ KM++IEYRLAAGTSEKIQLS+LI+AF AR
Sbjct: 291 LIDKMAEIEYRLAAGTSEKIQLSSLISAFQVAR 323
>gi|348533450|ref|XP_003454218.1| PREDICTED: replication factor C subunit 5-like [Oreochromis
niloticus]
Length = 335
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 106/150 (70%), Positives = 126/150 (84%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RFI E++LPHLLFYGPPGTGKT+TILACAR+LY + +FN+MVLELNASDDRGI
Sbjct: 33 DILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACARQLYKEKEFNSMVLELNASDDRGI 92
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 93 DVVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 152
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL ++ RL++
Sbjct: 153 SKIIPALQSRCTRFRFGPLSPDQMIPRLEH 182
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 86/194 (44%), Positives = 126/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL ++ RL++VI+QE +++TPDG
Sbjct: 136 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRLEHVIQQENIDITPDG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
K I+ LS GDMR+ LNILQS + A+ +V EDT++T + + LD ++
Sbjct: 196 MKGIVTLSTGDMRRSLNILQSTSMAYG-KVTEDTVYTCTGHPLRSDIANILDWCLNKDFT 254
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ + + P ++ + L++K++D+E+RLA+GTSEKI
Sbjct: 255 SAYNQILELKTLKGLALHDILTEVHLLVHRVDFPPAIRISLLIKLADVEHRLASGTSEKI 314
Query: 154 QLSALIAAFNSARD 167
QLS+++AAF + R+
Sbjct: 315 QLSSMVAAFQAVRE 328
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 130/252 (51%), Gaps = 70/252 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD+L+SH+DI+STI+ I E L L+ + GT + S ++A
Sbjct: 17 VEKYRPQTLDDLISHKDILSTIQRFISEDKLPHLL-------FYGPPGTGKT---STILA 66
Query: 161 AFNSARDKLE----VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
+ E VLELNASDDRGI +VR I FAST+T+ K +KL+ILDEADAMT
Sbjct: 67 CARQLYKEKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAMTQ 126
Query: 217 DAQNALRRKL---------------------------------PVTP------------- 230
DAQNALRR + P++P
Sbjct: 127 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRLEHVIQQ 186
Query: 231 -------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
DG K I+ LS GDMR+ LNILQS + A+ +V EDTVY G+P +++I NIL
Sbjct: 187 ENIDITPDGMKGIVTLSTGDMRRSLNILQSTSMAYG-KVTEDTVYTCTGHPLRSDIANIL 245
Query: 284 RWLLNESMDLCY 295
W LN+ Y
Sbjct: 246 DWCLNKDFTSAY 257
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 68/93 (73%), Gaps = 11/93 (11%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y +I E+K KGLAL DILTE+ LLVHR++ P ++ + L++K++D+
Sbjct: 243 NILDWCLNKDFTSAYNQILELKTLKGLALHDILTEVHLLVHRVDFPPAIRISLLIKLADV 302
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARDKL--EAP 529
E+RLA+GTSEKIQLS+++AAF + R+ + EAP
Sbjct: 303 EHRLASGTSEKIQLSSMVAAFQAVRELVVSEAP 335
>gi|427798817|gb|JAA64860.1| Putative replication factor c activator 1 5, partial [Rhipicephalus
pulchellus]
Length = 314
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 105/150 (70%), Positives = 128/150 (85%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RFI E++LPHLLFYGPPGTGKT+TILACA+++Y+ +F + VLELNASDDRGI
Sbjct: 27 DIISTIGRFIKEDKLPHLLFYGPPGTGKTSTILACAQQIYSPKEFTSKVLELNASDDRGI 86
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
GIVR +I FASTKT+ + +KLI+LDEADAMTNDAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 87 GIVRGEILSFASTKTIFNTGFKLIVLDEADAMTNDAQNALRRVIEKFTENARFCLICNYL 146
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL ++ + R+D+
Sbjct: 147 SKIIPALQSRCTRFRFGPLTAAQMSPRIDH 176
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/187 (51%), Positives = 127/187 (67%), Gaps = 30/187 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL ++ + R+D+VI QE++ VT DG
Sbjct: 130 IEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLTAAQMSPRIDHVITQERLTVTADG 189
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNE----------------DTIFTLLVSRVE 104
KKA++DL+ GDMRK LNILQS + A DEVNE D + TLL E
Sbjct: 190 KKALMDLAQGDMRKALNILQSTSMAF-DEVNETNVYLCVGHPLKEDISDIVSTLLNEDFE 248
Query: 105 KYRPSTLDEL-----VSHQDIIST-------IEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
Y + +++L ++ QD+++ IE+P+ + + L+ KM++IEYRLAAGTSEK
Sbjct: 249 -YSYNHINKLKVGKGLALQDVLTQVHLYVHRIELPDKVKMYLIDKMAEIEYRLAAGTSEK 307
Query: 153 IQLSALI 159
IQLS+LI
Sbjct: 308 IQLSSLI 314
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 109/255 (42%), Positives = 137/255 (53%), Gaps = 65/255 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD+L++H+DIISTI I E L L+ + GT + + A
Sbjct: 11 VEKYRPQKLDDLIAHEDIISTIGRFIKEDKLPHLL-------FYGPPGTGKTSTILACAQ 63
Query: 161 AFNSARD-KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
S ++ +VLELNASDDRGIGIVR +I FASTKT+ + +KLI+LDEADAMTNDAQ
Sbjct: 64 QIYSPKEFTSKVLELNASDDRGIGIVRGEILSFASTKTIFNTGFKLIVLDEADAMTNDAQ 123
Query: 220 NALRR-----------------------------------------------------KL 226
NALRR +L
Sbjct: 124 NALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLTAAQMSPRIDHVITQERL 183
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
VT DGKKA++DL+ GDMRK LNILQS + A DEVNE VY VG+P K +I++I+ L
Sbjct: 184 TVTADGKKALMDLAQGDMRKALNILQSTSMAF-DEVNETNVYLCVGHPLKEDISDIVSTL 242
Query: 287 LNESMDLCY-KINRF 300
LNE + Y IN+
Sbjct: 243 LNEDFEYSYNHINKL 257
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 53/64 (82%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I ++K+ KGLAL D+LT++ L VHR+E+P+ + + L+ KM++IEYRLAAGTSEKIQL
Sbjct: 251 YNHINKLKVGKGLALQDVLTQVHLYVHRIELPDKVKMYLIDKMAEIEYRLAAGTSEKIQL 310
Query: 513 SALI 516
S+LI
Sbjct: 311 SSLI 314
>gi|58331833|ref|NP_001011112.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
gi|54038730|gb|AAH84510.1| replication factor C (activator 1) 5 [Xenopus (Silurana)
tropicalis]
gi|89268121|emb|CAJ83540.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
Length = 335
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 106/150 (70%), Positives = 126/150 (84%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RFI E++LPHLLFYGPPGTGKT+TILACA++LY +FN+MVLELNASDDRGI
Sbjct: 34 DILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYKDREFNSMVLELNASDDRGI 93
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 94 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 153
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL +++ RL++
Sbjct: 154 SKIIPALQSRCTRFRFGPLSPEMMVPRLEH 183
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 129/194 (66%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL +++ RL++V+++E V+++PDG
Sbjct: 137 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPEMMVPRLEHVVKEECVDISPDG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS+GDMR+ LNILQS A+ +V EDT++T + + LD +++
Sbjct: 197 MKALVTLSNGDMRRSLNILQSTNMAYG-KVTEDTVYTCTGHPLRSDIANILDWMLNKDFT 255
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ + + P S+ + L++KM+D+EYRLA+GTSEKI
Sbjct: 256 SAYKNIMELKTLKGLALHDILTEVHLYVHRVDFPASVRMHLLIKMADVEYRLASGTSEKI 315
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF ARD
Sbjct: 316 QLSSLIAAFQVARD 329
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 103/250 (41%), Positives = 131/250 (52%), Gaps = 64/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD+L+SHQDI+STI+ I E L L+ + GT + + A
Sbjct: 18 VEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLL-------FYGPPGTGKTSTILACAK 70
Query: 161 AFNSARD-KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
R+ VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT DAQ
Sbjct: 71 QLYKDREFNSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 130
Query: 220 NALRRKL---------------------------------PVTP---------------- 230
NALRR + P++P
Sbjct: 131 NALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPEMMVPRLEHVVKEECV 190
Query: 231 ----DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
DG KA++ LS+GDMR+ LNILQS A+ +V EDTVY G+P +++I NIL W+
Sbjct: 191 DISPDGMKALVTLSNGDMRRSLNILQSTNMAYG-KVTEDTVYTCTGHPLRSDIANILDWM 249
Query: 287 LNESMDLCYK 296
LN+ YK
Sbjct: 250 LNKDFTSAYK 259
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 64/90 (71%), Gaps = 9/90 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTE+ L VHR++ P S+ + L++KM+D+
Sbjct: 244 NILDWMLNKDFTSAYKNIMELKTLKGLALHDILTEVHLYVHRVDFPASVRMHLLIKMADV 303
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
EYRLA+GTSEKIQLS+LIAAF ARD + A
Sbjct: 304 EYRLASGTSEKIQLSSLIAAFQVARDMVAA 333
>gi|195146716|ref|XP_002014330.1| GL19009 [Drosophila persimilis]
gi|194106283|gb|EDW28326.1| GL19009 [Drosophila persimilis]
Length = 333
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 109/144 (75%), Positives = 124/144 (86%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
INRFI + +LPHLL+YGPPGTGKT+TILACAR+LY A F +MVLELNASDDRGIGIVR
Sbjct: 35 INRFISQKQLPHLLYYGPPGTGKTSTILACARQLYPPALFKSMVLELNASDDRGIGIVRG 94
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+T+ ++KLIILDEADAMTNDAQNALRRIIEK+T NVRFCIICNYLSKI P
Sbjct: 95 QILNFASTRTIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIP 154
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLD 440
A+QSRCTRFRF PL ++ RL+
Sbjct: 155 ALQSRCTRFRFAPLSPDKMIPRLE 178
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 129/243 (53%), Gaps = 66/243 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +LD+L+SH +II TI + + + + L G + S ++A
Sbjct: 14 VEKYRPYSLDDLISHDEIILTI--------NRFISQKQLPHLLYYGPPGTGKTSTILACA 65
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
+ A K VLELNASDDRGIGIVR QI FAST+T+ ++KLIILDEADAMTNDA
Sbjct: 66 RQLYPPALFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDA 125
Query: 219 QNALRRKL---------------------------------PVTPD-------------- 231
QNALRR + P++PD
Sbjct: 126 QNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDKMIPRLEQIVQSED 185
Query: 232 ------GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
GKKA++ LS GDMRKVLN+LQS A A D VNED VY GYP + +I NIL+
Sbjct: 186 IKITENGKKALLTLSKGDMRKVLNVLQSTAMAF-DVVNEDNVYMCAGYPLRQDIENILKA 244
Query: 286 LLN 288
LL+
Sbjct: 245 LLS 247
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 114/195 (58%), Gaps = 29/195 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYLSKI PA+QSRCTRFRF PL ++ RL+ +++ E + +T +G
Sbjct: 133 IEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDKMIPRLEQIVQSEDIKITENG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQD- 119
KKA++ LS GDMRKVLN+LQS A A D VNED ++ + + + L L+S +
Sbjct: 193 KKALLTLSKGDMRKVLNVLQSTAMAF-DVVNEDNVYMCAGYPLRQDIENILKALLSGHNF 251
Query: 120 ---------------------------IISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
I+ +E P S++ +LV+K++ IE RL G ++
Sbjct: 252 EVSFQNVDVAKSARGLALEDIITELHLIVMRLEFPISVMNELVVKLAHIEERLTKGCTDI 311
Query: 153 IQLSALIAAFNSARD 167
+AL++AF RD
Sbjct: 312 ANTAALVSAFFICRD 326
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 444 ISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLA 503
+S N + + + K +GLAL DI+TE+ L+V RLE P S++ +LV+K++ IE RL
Sbjct: 246 LSGHNFEVSFQNVDVAKSARGLALEDIITELHLIVMRLEFPISVMNELVVKLAHIEERLT 305
Query: 504 AGTSEKIQLSALIAAFNSARD 524
G ++ +AL++AF RD
Sbjct: 306 KGCTDIANTAALVSAFFICRD 326
>gi|47221499|emb|CAG08161.1| unnamed protein product [Tetraodon nigroviridis]
Length = 335
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 106/150 (70%), Positives = 125/150 (83%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RFI E++LPHLLFYGPPGTGKT+TILACAR+LY +FN+MVLELNASDDRGI
Sbjct: 33 DILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACARQLYRDKEFNSMVLELNASDDRGI 92
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 93 DVVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 152
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL ++ RL++
Sbjct: 153 SKIIPALQSRCTRFRFGPLSPDQMVPRLEH 182
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 125/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL ++ RL++VI+QE ++VTPDG
Sbjct: 136 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMVPRLEHVIQQESIDVTPDG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEK--------------- 105
KAI+ LS GDMR+ LNILQS + A+ +V EDT++T +
Sbjct: 196 MKAIVTLSSGDMRRSLNILQSTSMAYG-KVTEDTVYTCTGHPLRSDIANILDWALNKDFT 254
Query: 106 --YRP----STLDELVSH------QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
YR TL L H +I ++ P ++ + L++K++D+E+RLA+GT EKI
Sbjct: 255 TAYRQILELKTLKGLALHDILTEVHLLIHRVDFPPNIRIGLLIKLADVEHRLASGTDEKI 314
Query: 154 QLSALIAAFNSARD 167
QLS+++AAF + RD
Sbjct: 315 QLSSMVAAFQAVRD 328
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 103/252 (40%), Positives = 131/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD+L+SH+DI+STI+ I E L L+ + GT + + L
Sbjct: 17 VEKYRPQKLDDLISHKDILSTIQRFISEDKLPHLL-------FYGPPGTGKTSTI--LAC 67
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A RDK VLELNASDDRGI +VR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 68 ARQLYRDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 127
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P++P
Sbjct: 128 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMVPRLEHVIQQE 187
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KAI+ LS GDMR+ LNILQS + A+ +V EDTVY G+P +++I NIL
Sbjct: 188 SIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYG-KVTEDTVYTCTGHPLRSDIANILD 246
Query: 285 WLLNESMDLCYK 296
W LN+ Y+
Sbjct: 247 WALNKDFTTAYR 258
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 63/86 (73%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y +I E+K KGLAL DILTE+ LL+HR++ P ++ + L++K++D+
Sbjct: 243 NILDWALNKDFTTAYRQILELKTLKGLALHDILTEVHLLIHRVDFPPNIRIGLLIKLADV 302
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
E+RLA+GT EKIQLS+++AAF + RD
Sbjct: 303 EHRLASGTDEKIQLSSMVAAFQAVRD 328
>gi|410923359|ref|XP_003975149.1| PREDICTED: replication factor C subunit 5-like [Takifugu rubripes]
Length = 335
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 105/150 (70%), Positives = 126/150 (84%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI+E++LPHLLFYGPPGTGKT+TILACAR+LY +FN+MVLELNASDDRGI
Sbjct: 33 DILSTIQKFINEDKLPHLLFYGPPGTGKTSTILACARQLYKDKEFNSMVLELNASDDRGI 92
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 93 DVVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 152
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL ++ RL++
Sbjct: 153 SKIIPALQSRCTRFRFGPLSPDQMIPRLEH 182
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 127/194 (65%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL ++ RL++VI+QE +++TPDG
Sbjct: 136 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRLEHVIQQESIDITPDG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLD-------- 112
KAI+ LS GDMR+ LNILQS + A+ ++V E+T + + + LD
Sbjct: 196 MKAIVTLSSGDMRRSLNILQSTSMAY-EKVTEETAYNCTGHPLRSDIANILDWALNKDFT 254
Query: 113 -------EL-----VSHQDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
EL ++ QDI++ + + P + + L++K++D+E+RLA+GT EKI
Sbjct: 255 TAYKQILELKTLKGLALQDILTEVHLLIHRVDFPPDIRIGLLIKLADVEHRLASGTDEKI 314
Query: 154 QLSALIAAFNSARD 167
QLS+++AAF + RD
Sbjct: 315 QLSSMVAAFQAVRD 328
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/255 (40%), Positives = 131/255 (51%), Gaps = 74/255 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI- 159
VEKYRP LD+L+SH+DI+STI+ I E L L+ + GT + + A
Sbjct: 17 VEKYRPQKLDDLISHRDILSTIQKFINEDKLPHLL-------FYGPPGTGKTSTILACAR 69
Query: 160 -----AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 214
FNS VLELNASDDRGI +VR I FAST+T+ K +KL+ILDEADAM
Sbjct: 70 QLYKDKEFNSM-----VLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAM 124
Query: 215 TNDAQNALRRKL---------------------------------PVTP----------- 230
T DAQNALRR + P++P
Sbjct: 125 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRLEHVI 184
Query: 231 ---------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITN 281
DG KAI+ LS GDMR+ LNILQS + A+ ++V E+T YN G+P +++I N
Sbjct: 185 QQESIDITPDGMKAIVTLSSGDMRRSLNILQSTSMAY-EKVTEETAYNCTGHPLRSDIAN 243
Query: 282 ILRWLLNESMDLCYK 296
IL W LN+ YK
Sbjct: 244 ILDWALNKDFTTAYK 258
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 62/86 (72%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y +I E+K KGLAL DILTE+ LL+HR++ P + + L++K++D+
Sbjct: 243 NILDWALNKDFTTAYKQILELKTLKGLALQDILTEVHLLIHRVDFPPDIRIGLLIKLADV 302
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
E+RLA+GT EKIQLS+++AAF + RD
Sbjct: 303 EHRLASGTDEKIQLSSMVAAFQAVRD 328
>gi|63102390|gb|AAH95222.1| Rfc5 protein [Danio rerio]
gi|182889646|gb|AAI65456.1| Replication factor C (activator 1) 5 [Danio rerio]
Length = 334
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 105/150 (70%), Positives = 125/150 (83%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLLFYGPPGTGKT+TILACAR+LY +FN+MVLELNASDDRGI
Sbjct: 33 DILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYKDKEFNSMVLELNASDDRGI 92
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 93 DVVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 152
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL + ++ RL++
Sbjct: 153 SKIIPALQSRCTRFRFGPLSQNQMIPRLEH 182
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 125/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL + ++ RL++VI+QE +++TPDG
Sbjct: 136 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQESIDITPDG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT---------------------LL 99
KAI+ LS GDMR+ LNILQS A+ +V E+T++T
Sbjct: 196 MKAIVTLSTGDMRRSLNILQSTHMAYG-KVTEETVYTCTGHPLRSDIANILDWALNKDFT 254
Query: 100 VSRVEKYRPSTLDELVSH------QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ + TL L H +I ++ P S+ + L++K++DIEYRLA+GTSEKI
Sbjct: 255 TAYNQILELKTLKGLALHDILTEVHLLIRRVDFPPSIRMGLLIKLADIEYRLASGTSEKI 314
Query: 154 QLSALIAAFNSARD 167
QLS+++AAF + RD
Sbjct: 315 QLSSMVAAFQAVRD 328
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 125/254 (49%), Gaps = 74/254 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI- 159
VEKYRP TLD+L+SHQDI+STI+ I E L L+ + GT + + A
Sbjct: 17 VEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLL-------FYGPPGTGKTSTILACAR 69
Query: 160 -----AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 214
FNS VLELNASDDRGI +VR I FAST+T+ K +KL+ILDEADAM
Sbjct: 70 QLYKDKEFNSM-----VLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAM 124
Query: 215 TNDAQNALRRKL---------------------------------PVTPDG--------- 232
T DAQNALRR + P++ +
Sbjct: 125 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVI 184
Query: 233 KKAIIDLSDGDMRKV-----------LNILQSAATAHADEVNEDTVYNSVGYPTKTEITN 281
++ ID++ M+ + LNILQS A+ +V E+TVY G+P +++I N
Sbjct: 185 QQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYG-KVTEETVYTCTGHPLRSDIAN 243
Query: 282 ILRWLLNESMDLCY 295
IL W LN+ Y
Sbjct: 244 ILDWALNKDFTTAY 257
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 63/86 (73%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y +I E+K KGLAL DILTE+ LL+ R++ P S+ + L++K++DI
Sbjct: 243 NILDWALNKDFTTAYNQILELKTLKGLALHDILTEVHLLIRRVDFPPSIRMGLLIKLADI 302
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRLA+GTSEKIQLS+++AAF + RD
Sbjct: 303 EYRLASGTSEKIQLSSMVAAFQAVRD 328
>gi|51467970|ref|NP_001003862.1| replication factor C subunit 5 [Danio rerio]
gi|49618977|gb|AAT68073.1| replication factor C subunit RFC5 [Danio rerio]
Length = 334
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 105/150 (70%), Positives = 125/150 (83%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLLFYGPPGTGKT+TILACAR+LY +FN+MVLELNASDDRGI
Sbjct: 33 DILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYKDKEFNSMVLELNASDDRGI 92
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 93 DVVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 152
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL + ++ RL++
Sbjct: 153 SKIIPALQSRCTRFRFGPLSQNQMIPRLEH 182
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 125/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL + ++ RL++VI+QE +++TPDG
Sbjct: 136 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQESIDITPDG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT---------------------LL 99
KAI+ LS GDMR+ LNILQS A+ +V E+T++T
Sbjct: 196 MKAIVTLSTGDMRRSLNILQSTHMAYG-KVTEETVYTCTGHPLRSDIANILDWALNKDFT 254
Query: 100 VSRVEKYRPSTLDELVSH------QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ + TL L H +I ++ P S+ + L++K++DIEYRLA+GTSEKI
Sbjct: 255 TAYNQILELKTLKGLALHDILTEVHLLIHRVDFPPSIRMGLLIKLADIEYRLASGTSEKI 314
Query: 154 QLSALIAAFNSARD 167
QLS+++AAF + RD
Sbjct: 315 QLSSMVAAFQAVRD 328
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 125/254 (49%), Gaps = 74/254 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI- 159
VEKYRP TLD+L+SHQDI+STI+ I E L L+ + GT + + A
Sbjct: 17 VEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLL-------FYGPPGTGKTSTILACAR 69
Query: 160 -----AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 214
FNS VLELNASDDRGI +VR I FAST+T+ K +KL+ILDEADAM
Sbjct: 70 QLYKDKEFNSM-----VLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAM 124
Query: 215 TNDAQNALRRKL---------------------------------PVTPDG--------- 232
T DAQNALRR + P++ +
Sbjct: 125 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVI 184
Query: 233 KKAIIDLSDGDMRKV-----------LNILQSAATAHADEVNEDTVYNSVGYPTKTEITN 281
++ ID++ M+ + LNILQS A+ +V E+TVY G+P +++I N
Sbjct: 185 QQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYG-KVTEETVYTCTGHPLRSDIAN 243
Query: 282 ILRWLLNESMDLCY 295
IL W LN+ Y
Sbjct: 244 ILDWALNKDFTTAY 257
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 64/86 (74%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y +I E+K KGLAL DILTE+ LL+HR++ P S+ + L++K++DI
Sbjct: 243 NILDWALNKDFTTAYNQILELKTLKGLALHDILTEVHLLIHRVDFPPSIRMGLLIKLADI 302
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRLA+GTSEKIQLS+++AAF + RD
Sbjct: 303 EYRLASGTSEKIQLSSMVAAFQAVRD 328
>gi|126324700|ref|XP_001375103.1| PREDICTED: replication factor C subunit 5 [Monodelphis domestica]
Length = 342
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 106/150 (70%), Positives = 124/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACAR+LY +FN+MVLELNASDDRGI
Sbjct: 41 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACARQLYKDKEFNSMVLELNASDDRGI 100
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 101 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 160
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 161 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 190
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/194 (47%), Positives = 123/194 (63%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++VI +EKV+V+ DG
Sbjct: 144 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIAEEKVDVSEDG 203
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T +T ++ + LD +++
Sbjct: 204 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETAYTCTGHPLKADIANILDWMLNQDFT 262
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P + + L++KM+DIE+RLA GTSEKI
Sbjct: 263 SAYRNITELKTLKGLALHDILTEIHLFVHRVDFPPPVRIHLLIKMADIEHRLAVGTSEKI 322
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 323 QLSSLIAAFQVTRD 336
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 129/258 (50%), Gaps = 80/258 (31%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLDEL+SHQDI+STI+ I E L L+L G + S ++A
Sbjct: 25 VEKYRPQTLDELISHQDILSTIQKFISEDRLPHLLL----------YGPPGTGKTSTILA 74
Query: 161 A---------FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEA 211
FNS VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEA
Sbjct: 75 CARQLYKDKEFNSM-----VLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEA 129
Query: 212 DAMTNDAQNALRRKL---------------------------------PVTP-------- 230
DAMT DAQNALRR + P+TP
Sbjct: 130 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 189
Query: 231 ------------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTE 278
DG KA++ LS GDMR+ LNILQS A +V E+T Y G+P K +
Sbjct: 190 HVIAEEKVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETAYTCTGHPLKAD 248
Query: 279 ITNILRWLLNESMDLCYK 296
I NIL W+LN+ Y+
Sbjct: 249 IANILDWMLNQDFTSAYR 266
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P + + L++KM+DI
Sbjct: 251 NILDWMLNQDFTSAYRNITELKTLKGLALHDILTEIHLFVHRVDFPPPVRIHLLIKMADI 310
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
E+RLA GTSEKIQLS+LIAAF RD
Sbjct: 311 EHRLAVGTSEKIQLSSLIAAFQVTRD 336
>gi|395834095|ref|XP_003790050.1| PREDICTED: replication factor C subunit 5 [Otolemur garnettii]
Length = 456
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/178 (63%), Positives = 135/178 (75%), Gaps = 11/178 (6%)
Query: 274 PTKTEITNILRWL-------LNE---SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P T+I N L W+ LN+ D+ I +FI E+ LPHLLFYGPPGTGKT+TI
Sbjct: 128 PAGTKIRN-LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTI 186
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
LACA++LY +F +MVLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAM
Sbjct: 187 LACAKRLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAM 246
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T DAQNALRR+IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 247 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 304
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 92/194 (47%), Positives = 126/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 258 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 317
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++H
Sbjct: 318 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNHDFT 376
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L+ KM+DIEYRL+ GT+EKI
Sbjct: 377 TAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIYLLTKMADIEYRLSVGTNEKI 436
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 437 QLSSLIAAFQVTRD 450
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+ + GT + + L
Sbjct: 139 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLL-------FYGPPGTGKTSTI--LAC 189
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 190 AKRLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 249
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 250 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 309
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 310 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 368
Query: 285 WLLNESMDLCYK 296
W+LN Y+
Sbjct: 369 WMLNHDFTTAYR 380
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 365 NILDWMLNHDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIYLLTKMADI 424
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GT+EKIQLS+LIAAF RD
Sbjct: 425 EYRLSVGTNEKIQLSSLIAAFQVTRD 450
>gi|395514036|ref|XP_003761227.1| PREDICTED: replication factor C subunit 5 [Sarcophilus harrisii]
Length = 343
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 105/150 (70%), Positives = 124/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +FN+MVLELNASDDRGI
Sbjct: 42 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFNSMVLELNASDDRGI 101
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 102 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 161
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 162 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 191
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 126/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++VIE+EKV+++ DG
Sbjct: 145 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEEEKVDISEDG 204
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA+I LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 205 MKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANILDWMLNQDFT 263
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P ++ + L++KM+DIE+RLA GTSEKI
Sbjct: 264 TAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPPAVRIHLLIKMADIEHRLAVGTSEKI 323
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 324 QLSSLIAAFQVTRD 337
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 107/258 (41%), Positives = 131/258 (50%), Gaps = 80/258 (31%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + S ++A
Sbjct: 26 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLL----------YGPPGTGKTSTILA 75
Query: 161 A---------FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEA 211
FNS VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEA
Sbjct: 76 CAKQLYKDKEFNSM-----VLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEA 130
Query: 212 DAMTNDAQNALRRKL---------------------------------PVTP-------- 230
DAMT DAQNALRR + P+TP
Sbjct: 131 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 190
Query: 231 ------------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTE 278
DG KA+I LS GDMR+ LNILQS A +V E+TVY G+P KT+
Sbjct: 191 HVIEEEKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTD 249
Query: 279 ITNILRWLLNESMDLCYK 296
I NIL W+LN+ Y+
Sbjct: 250 IANILDWMLNQDFTTAYR 267
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 60/86 (69%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P ++ + L++KM+DI
Sbjct: 252 NILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPPAVRIHLLIKMADI 311
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
E+RLA GTSEKIQLS+LIAAF RD
Sbjct: 312 EHRLAVGTSEKIQLSSLIAAFQVTRD 337
>gi|224072550|ref|XP_002188696.1| PREDICTED: replication factor C subunit 5 [Taeniopygia guttata]
Length = 329
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 105/150 (70%), Positives = 124/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + RFI E+ LPHLL YGPPGTGKT+TILACAR+LY + +F++MVLELNASDDRGI
Sbjct: 28 DILSTVQRFISEDRLPHLLLYGPPGTGKTSTILACARQLYREREFSSMVLELNASDDRGI 87
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 88 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 147
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL +
Sbjct: 148 SKIIPALQSRCTRFRFGPLTPELMVPRLQH 177
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 126/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL +VI++E V+VT DG
Sbjct: 131 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQEEGVDVTEDG 190
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS + A +V E+ ++T ++ + LD +++
Sbjct: 191 MKALVTLSSGDMRRALNILQSTSMAFG-KVTEENVYTCTGHPLKSDIANILDWMLNQDFS 249
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
QDI++ I + P S+ + L++K++DIEYRLAAGTSEKI
Sbjct: 250 TAYRKIMELKTLKGLALQDILTEIHLFVHRVDFPPSIRIQLLIKLADIEYRLAAGTSEKI 309
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 310 QLSSLIAAFQVTRD 323
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 100/250 (40%), Positives = 126/250 (50%), Gaps = 64/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L ELV H+DI+ST++ I E L L+L GT + + A
Sbjct: 12 VEKYRPQALSELVFHRDILSTVQRFISEDRLPHLLLYGP-------PGTGKTSTILACAR 64
Query: 161 AFNSARD-KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
R+ VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT DAQ
Sbjct: 65 QLYREREFSSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQ 124
Query: 220 NALRRKL---------------------------------PVTP---------------- 230
NALRR + P+TP
Sbjct: 125 NALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQEEGV 184
Query: 231 ----DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
DG KA++ LS GDMR+ LNILQS + A +V E+ VY G+P K++I NIL W+
Sbjct: 185 DVTEDGMKALVTLSSGDMRRALNILQSTSMAFG-KVTEENVYTCTGHPLKSDIANILDWM 243
Query: 287 LNESMDLCYK 296
LN+ Y+
Sbjct: 244 LNQDFSTAYR 253
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 62/86 (72%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y KI E+K KGLAL DILTEI L VHR++ P S+ + L++K++DI
Sbjct: 238 NILDWMLNQDFSTAYRKIMELKTLKGLALQDILTEIHLFVHRVDFPPSIRIQLLIKLADI 297
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRLAAGTSEKIQLS+LIAAF RD
Sbjct: 298 EYRLAAGTSEKIQLSSLIAAFQVTRD 323
>gi|397524983|ref|XP_003832459.1| PREDICTED: replication factor C subunit 5 [Pan paniscus]
Length = 340
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/178 (62%), Positives = 135/178 (75%), Gaps = 11/178 (6%)
Query: 274 PTKTEITNILRWL-------LNE---SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P T+I N L W+ LN+ D+ I +FI+E+ LPHLL YGPPGTGKT+TI
Sbjct: 12 PAATKIRN-LPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTI 70
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
LACA++LY +F +MVLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAM
Sbjct: 71 LACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAM 130
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T DAQNALRR+IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 131 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 125/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 260
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L+ KM+DIEYRL+ GT+EKI
Sbjct: 261 TAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKI 320
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 321 QLSSLIAAFQVTRD 334
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPP-----GTGKTSTI----LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 252
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 253 WMLNQDFTTAYR 264
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 249 NILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI 308
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GT+EKIQLS+LIAAF RD
Sbjct: 309 EYRLSVGTNEKIQLSSLIAAFQVTRD 334
>gi|449672093|ref|XP_002154784.2| PREDICTED: replication factor C subunit 5-like [Hydra
magnipapillata]
Length = 186
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/150 (70%), Positives = 128/150 (85%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E +LPHLLFYGPPGTGKT+TILA A++LY+ +F++MVLELNASDDRGI
Sbjct: 31 DIIDTIQKFISEGKLPHLLFYGPPGTGKTSTILAVAKQLYSPKEFHSMVLELNASDDRGI 90
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
GIVR+QI FAST+T+ KS +KL+ILDEADAMTNDAQNALRRI+EK+T N RFC+ICNYL
Sbjct: 91 GIVREQILGFASTRTVFKSKFKLVILDEADAMTNDAQNALRRIMEKYTENTRFCLICNYL 150
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ I PAIQSRCTRFRFGPLD+ + RL +
Sbjct: 151 TGIIPAIQSRCTRFRFGPLDADQVSLRLKH 180
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/125 (55%), Positives = 86/125 (68%), Gaps = 10/125 (8%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+ LD+L+SH+DII TI+ I E L L+ + GT + + A+
Sbjct: 15 VEKYRPACLDDLISHKDIIDTIQKFISEGKLPHLL-------FYGPPGTGKTSTILAVAK 67
Query: 161 AFNSARD-KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
S ++ VLELNASDDRGIGIVR+QI FAST+T+ KS +KL+ILDEADAMTNDAQ
Sbjct: 68 QLYSPKEFHSMVLELNASDDRGIGIVREQILGFASTRTVFKSKFKLVILDEADAMTNDAQ 127
Query: 220 NALRR 224
NALRR
Sbjct: 128 NALRR 132
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 44/53 (83%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEK 53
+EK+T N RFC+ICNYL+ I PAIQSRCTRFRFGPLD+ + RL +VI++EK
Sbjct: 134 MEKYTENTRFCLICNYLTGIIPAIQSRCTRFRFGPLDADQVSLRLKHVIQEEK 186
>gi|410210156|gb|JAA02297.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410251550|gb|JAA13742.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410296138|gb|JAA26669.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410333015|gb|JAA35454.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
Length = 340
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/178 (62%), Positives = 135/178 (75%), Gaps = 11/178 (6%)
Query: 274 PTKTEITNILRWL-------LNE---SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P T+I N L W+ LN+ D+ I +FI+E+ LPHLL YGPPGTGKT+TI
Sbjct: 12 PAATKIRN-LPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTI 70
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
LACA++LY +F +MVLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAM
Sbjct: 71 LACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAM 130
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T DAQNALRR+IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 131 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/195 (49%), Positives = 127/195 (65%), Gaps = 30/195 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT---------------LLVSR--V 103
KA++ LS GDMR+ LNILQS A +V E+T++T +++R
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNRDFT 260
Query: 104 EKYRP----STLDELVSHQDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEK 152
YR TL L H DI++ I + P S+ + L+ KM+DIEYRL+ GT+EK
Sbjct: 261 TAYRNITELKTLKGLALH-DILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEK 319
Query: 153 IQLSALIAAFNSARD 167
IQLS+LIAAF RD
Sbjct: 320 IQLSSLIAAFQVTRD 334
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 129/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPP-----GTGKTSTI----LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 252
Query: 285 WLLNESMDLCYK 296
W+LN Y+
Sbjct: 253 WMLNRDFTTAYR 264
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 249 NILDWMLNRDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI 308
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GT+EKIQLS+LIAAF RD
Sbjct: 309 EYRLSVGTNEKIQLSSLIAAFQVTRD 334
>gi|114647195|ref|XP_001156572.1| PREDICTED: replication factor C subunit 5 isoform 5 [Pan
troglodytes]
Length = 340
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/178 (62%), Positives = 135/178 (75%), Gaps = 11/178 (6%)
Query: 274 PTKTEITNILRWL-------LNE---SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P T+I N L W+ LN+ D+ I +FI+E+ LPHLL YGPPGTGKT+TI
Sbjct: 12 PAATKIRN-LPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTI 70
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
LACA++LY +F +MVLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAM
Sbjct: 71 LACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAM 130
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T DAQNALRR+IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 131 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/195 (49%), Positives = 126/195 (64%), Gaps = 30/195 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV ++ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVGISEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT---------------LLVSR--V 103
KA++ LS GDMR+ LNILQS A +V E+T++T +++R
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNRDFT 260
Query: 104 EKYRP----STLDELVSHQDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEK 152
YR TL L H DI++ I + P S+ + L+ KM+DIEYRL+ GT+EK
Sbjct: 261 TAYRNITELKTLKGLALH-DILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEK 319
Query: 153 IQLSALIAAFNSARD 167
IQLS+LIAAF RD
Sbjct: 320 IQLSSLIAAFQVTRD 334
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 129/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPP-----GTGKTSTI----LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 194 KVGISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 252
Query: 285 WLLNESMDLCYK 296
W+LN Y+
Sbjct: 253 WMLNRDFTTAYR 264
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 249 NILDWMLNRDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI 308
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GT+EKIQLS+LIAAF RD
Sbjct: 309 EYRLSVGTNEKIQLSSLIAAFQVTRD 334
>gi|332250708|ref|XP_003274494.1| PREDICTED: replication factor C subunit 5 isoform 1 [Nomascus
leucogenys]
gi|426374300|ref|XP_004054014.1| PREDICTED: replication factor C subunit 5 [Gorilla gorilla gorilla]
Length = 340
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 112/178 (62%), Positives = 134/178 (75%), Gaps = 11/178 (6%)
Query: 274 PTKTEITNILRWL-------LNE---SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P T+I N L W+ LN+ D+ I +FI E+ LPHLL YGPPGTGKT+TI
Sbjct: 12 PAATKIRN-LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTI 70
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
LACA++LY +F +MVLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAM
Sbjct: 71 LACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAM 130
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T DAQNALRR+IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 131 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 125/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 260
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L+ KM+DIEYRL+ GT+EKI
Sbjct: 261 TAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKI 320
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 321 QLSSLIAAFQVTRD 334
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 252
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 253 WMLNQDFTTAYR 264
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 249 NILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI 308
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GT+EKIQLS+LIAAF RD
Sbjct: 309 EYRLSVGTNEKIQLSSLIAAFQVTRD 334
>gi|62087564|dbj|BAD92229.1| replication factor C 5 isoform 1 variant [Homo sapiens]
Length = 351
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 111/178 (62%), Positives = 135/178 (75%), Gaps = 11/178 (6%)
Query: 274 PTKTEITNILRWL-------LNE---SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P T+I N L W+ LN+ D+ I +FI+E+ LPHLL YGPPGTGKT+TI
Sbjct: 26 PAATKIRN-LPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTI 84
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
LACA++LY +F +MVLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAM
Sbjct: 85 LACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAM 144
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T DAQNALRR+IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 145 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 202
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 95/192 (49%), Positives = 125/192 (65%), Gaps = 27/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 156 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 215
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEK--------------- 105
KA++ LS GDMR+ LNILQS A +V E+T++T ++
Sbjct: 216 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 274
Query: 106 --YRP-STLDELVSHQDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
YR TL L H DI++ I + P S+ + L+ KM+DIEYRL+ GT+EKIQL
Sbjct: 275 TAYRKLKTLKGLALH-DILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQL 333
Query: 156 SALIAAFNSARD 167
S+LIAAF RD
Sbjct: 334 SSLIAAFQVTRD 345
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 37 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPP-----GTGKTSTI----LAC 87
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 88 AKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQD 147
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 148 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 207
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 208 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 266
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 267 WMLNQDFTTAYR 278
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 59/83 (71%), Gaps = 6/83 (7%)
Query: 448 NIIIWYIK------IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYR 501
NI+ W + +++K KGLAL DILTEI L VHR++ P S+ + L+ KM+DIEYR
Sbjct: 263 NILDWMLNQDFTTAYRKLKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYR 322
Query: 502 LAAGTSEKIQLSALIAAFNSARD 524
L+ GT+EKIQLS+LIAAF RD
Sbjct: 323 LSVGTNEKIQLSSLIAAFQVTRD 345
>gi|363740218|ref|XP_003642280.1| PREDICTED: replication factor C subunit 5-like [Gallus gallus]
Length = 347
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 104/145 (71%), Positives = 122/145 (84%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ RFI E+ LPHLL YGPPGTGKT+TILACAR+LY + +F++MVLELNASDDRGI IVR
Sbjct: 51 VQRFISEDRLPHLLLYGPPGTGKTSTILACARQLYREREFSSMVLELNASDDRGIDIVRG 110
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYLSKI P
Sbjct: 111 PILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIP 170
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
A+QSRCTRFRFGPL L++ RL +
Sbjct: 171 ALQSRCTRFRFGPLTPELMVPRLQH 195
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 126/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL +VI++E V+V+ DG
Sbjct: 149 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQEEGVDVSEDG 208
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS + A +V E+ ++T ++ + LD +++
Sbjct: 209 MKALVTLSSGDMRRALNILQSTSMAFG-KVTEENVYTCTGHPLKADIANILDWMLNQKFS 267
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
QDI++ I + P S+ + L++KM+DIEYRLAAGTSEK+
Sbjct: 268 TAYRKIMELKTLKGLALQDILTEIHLFVHRVDFPPSVRIQLLIKMADIEYRLAAGTSEKV 327
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 328 QLSSLIAAFQVTRD 341
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 93/179 (51%), Gaps = 54/179 (30%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRKL---- 226
VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR +
Sbjct: 94 VLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFT 153
Query: 227 -----------------------------PVTP--------------------DGKKAII 237
P+TP DG KA++
Sbjct: 154 ENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQEEGVDVSEDGMKALV 213
Query: 238 DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYK 296
LS GDMR+ LNILQS + A +V E+ VY G+P K +I NIL W+LN+ Y+
Sbjct: 214 TLSSGDMRRALNILQSTSMAFG-KVTEENVYTCTGHPLKADIANILDWMLNQKFSTAYR 271
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 62/86 (72%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y KI E+K KGLAL DILTEI L VHR++ P S+ + L++KM+DI
Sbjct: 256 NILDWMLNQKFSTAYRKIMELKTLKGLALQDILTEIHLFVHRVDFPPSVRIQLLIKMADI 315
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRLAAGTSEK+QLS+LIAAF RD
Sbjct: 316 EYRLAAGTSEKVQLSSLIAAFQVTRD 341
>gi|332164786|ref|NP_001193730.1| replication factor C subunit 5 isoform 4 [Homo sapiens]
gi|208967278|dbj|BAG73653.1| replication factor C [synthetic construct]
Length = 337
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 111/178 (62%), Positives = 135/178 (75%), Gaps = 11/178 (6%)
Query: 274 PTKTEITNILRWL-------LNE---SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P T+I N L W+ LN+ D+ I +FI+E+ LPHLL YGPPGTGKT+TI
Sbjct: 12 PAATKIRN-LPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTI 70
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
LACA++LY +F +MVLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAM
Sbjct: 71 LACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAM 130
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T DAQNALRR+IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 131 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 95/192 (49%), Positives = 125/192 (65%), Gaps = 27/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEK--------------- 105
KA++ LS GDMR+ LNILQS A +V E+T++T ++
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 260
Query: 106 --YRP-STLDELVSHQDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
YR TL L H DI++ I + P S+ + L+ KM+DIEYRL+ GT+EKIQL
Sbjct: 261 TAYRKLKTLKGLALH-DILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQL 319
Query: 156 SALIAAFNSARD 167
S+LIAAF RD
Sbjct: 320 SSLIAAFQVTRD 331
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPP-----GTGKTSTI----LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 252
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 253 WMLNQDFTTAYR 264
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 59/83 (71%), Gaps = 6/83 (7%)
Query: 448 NIIIWYIK------IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYR 501
NI+ W + +++K KGLAL DILTEI L VHR++ P S+ + L+ KM+DIEYR
Sbjct: 249 NILDWMLNQDFTTAYRKLKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYR 308
Query: 502 LAAGTSEKIQLSALIAAFNSARD 524
L+ GT+EKIQLS+LIAAF RD
Sbjct: 309 LSVGTNEKIQLSSLIAAFQVTRD 331
>gi|6677723|ref|NP_031396.1| replication factor C subunit 5 isoform 1 [Homo sapiens]
gi|728777|sp|P40937.1|RFC5_HUMAN RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|1498257|gb|AAB09784.1| replication factor C, 36-kDa subunit [Homo sapiens]
gi|12804841|gb|AAH01866.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|15530326|gb|AAH13961.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|29124997|gb|AAO63493.1| replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|312151544|gb|ADQ32284.1| replication factor C (activator 1) 5, 36.5kDa [synthetic construct]
Length = 340
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 111/178 (62%), Positives = 135/178 (75%), Gaps = 11/178 (6%)
Query: 274 PTKTEITNILRWL-------LNE---SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P T+I N L W+ LN+ D+ I +FI+E+ LPHLL YGPPGTGKT+TI
Sbjct: 12 PAATKIRN-LPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTI 70
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
LACA++LY +F +MVLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAM
Sbjct: 71 LACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAM 130
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T DAQNALRR+IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 131 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 125/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 260
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L+ KM+DIEYRL+ GT+EKI
Sbjct: 261 TAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKI 320
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 321 QLSSLIAAFQVTRD 334
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPP-----GTGKTSTI----LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 252
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 253 WMLNQDFTTAYR 264
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 249 NILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI 308
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GT+EKIQLS+LIAAF RD
Sbjct: 309 EYRLSVGTNEKIQLSSLIAAFQVTRD 334
>gi|158254806|dbj|BAF83374.1| unnamed protein product [Homo sapiens]
Length = 340
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 111/178 (62%), Positives = 135/178 (75%), Gaps = 11/178 (6%)
Query: 274 PTKTEITNILRWL-------LNE---SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P T+I N L W+ LN+ D+ I +FI+E+ LPHLL YGPPGTGKT+TI
Sbjct: 12 PAATKIRN-LPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTI 70
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
LACA++LY +F +MVLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAM
Sbjct: 71 LACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAM 130
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T DAQNALRR+IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 131 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 125/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFA 260
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L+ KM+DIEYRL+ GT+EKI
Sbjct: 261 TAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKI 320
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 321 QLSSLIAAFQVTRD 334
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPP-----GTGKTSTI----LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 252
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 253 WMLNQDFATAYR 264
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 249 NILDWMLNQDFATAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI 308
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GT+EKIQLS+LIAAF RD
Sbjct: 309 EYRLSVGTNEKIQLSSLIAAFQVTRD 334
>gi|432116793|gb|ELK37418.1| Replication factor C subunit 5 [Myotis davidii]
Length = 341
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 110/178 (61%), Positives = 133/178 (74%), Gaps = 11/178 (6%)
Query: 274 PTKTEITNILRWL----------LNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P+ ++I N L W+ L D+ I +FI E+ LPHLL YGPPGTGKT+TI
Sbjct: 13 PSTSKIRN-LPWVEKYRPQTLSDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTI 71
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
LACA++LY +F +MVLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAM
Sbjct: 72 LACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAM 131
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T DAQNALRR+IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 132 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 189
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/194 (49%), Positives = 128/194 (65%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++VIE+EKV+V+ DG
Sbjct: 143 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEEEKVDVSEDG 202
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA+I LS GDMR+ LNILQS + A + +V E+T++T ++ + LD +++
Sbjct: 203 MKALITLSSGDMRRALNILQSTSMAFS-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 261
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L+ KM+DIEYRL+AGTSEKI
Sbjct: 262 TAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSAGTSEKI 321
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 322 QLSSLIAAFQVTRD 335
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/252 (42%), Positives = 131/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL +L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 24 VEKYRPQTLSDLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 74
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 75 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 134
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 135 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEEE 194
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA+I LS GDMR+ LNILQS + A + +V E+TVY G+P K++I NIL
Sbjct: 195 KVDVSEDGMKALITLSSGDMRRALNILQSTSMAFS-KVTEETVYTCTGHPLKSDIANILD 253
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 254 WMLNQDFTTAYR 265
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 60/86 (69%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 250 NILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI 309
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+AGTSEKIQLS+LIAAF RD
Sbjct: 310 EYRLSAGTSEKIQLSSLIAAFQVTRD 335
>gi|194042984|ref|XP_001926304.1| PREDICTED: replication factor C subunit 5 [Sus scrofa]
Length = 340
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 111/178 (62%), Positives = 132/178 (74%), Gaps = 11/178 (6%)
Query: 274 PTKTEITNILRWL----------LNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P T+I N L W+ L D+ I +FI E+ LPHLL YGPPGTGKT+TI
Sbjct: 12 PEATKIRN-LPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTI 70
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
LACA++LY +F +MVLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAM
Sbjct: 71 LACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAM 130
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T DAQNALRR+IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 131 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/194 (47%), Positives = 125/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA+I LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 202 MKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 260
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L+ KM+DIEYRL+ GT+EKI
Sbjct: 261 TAYRNIMELKTLKGLALNDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKI 320
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 321 QLSSLIAAFQVTRD 334
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 107/252 (42%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD+L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 23 VEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA+I LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 194 KVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 252
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 253 WMLNQDFTTAYR 264
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 249 NILDWMLNQDFTTAYRNIMELKTLKGLALNDILTEIHLFVHRVDFPSSVRIHLLTKMADI 308
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GT+EKIQLS+LIAAF RD
Sbjct: 309 EYRLSVGTNEKIQLSSLIAAFQVTRD 334
>gi|348584882|ref|XP_003478201.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Cavia
porcellus]
Length = 340
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 39 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 98
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 99 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 158
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 159 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 125/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+++EKV+++ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVKEEKVDISEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 260
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L+ KM+DIEYRL+ GTSEKI
Sbjct: 261 TAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKI 320
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 321 QLSSLIAAFQVTRD 334
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVKEE 193
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 252
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 253 WMLNQDFTTAYR 264
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 249 NILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI 308
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GTSEKIQLS+LIAAF RD
Sbjct: 309 EYRLSVGTSEKIQLSSLIAAFQVTRD 334
>gi|74211816|dbj|BAE29258.1| unnamed protein product [Mus musculus]
Length = 339
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 38 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 97
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 98 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 157
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 158 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 187
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 124/194 (63%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+++E V+++ DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 200
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 201 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANILDWMLNQDFT 259
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ + + P S+ + L+ KM+DIEYRL+ GTSEKI
Sbjct: 260 TAYKSIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKI 319
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 320 QLSSLIAAFQVTRD 333
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 107/252 (42%), Positives = 129/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL +L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 22 VEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 72
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 73 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 132
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 133 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEE 192
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P KT+I NIL
Sbjct: 193 NVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANILD 251
Query: 285 WLLNESMDLCYK 296
W+LN+ YK
Sbjct: 252 WMLNQDFTTAYK 263
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTE+ L VHR++ P S+ + L+ KM+DI
Sbjct: 248 NILDWMLNQDFTTAYKSIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADI 307
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GTSEKIQLS+LIAAF RD
Sbjct: 308 EYRLSVGTSEKIQLSSLIAAFQVTRD 333
>gi|449265791|gb|EMC76929.1| Replication factor C subunit 5, partial [Columba livia]
Length = 299
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/145 (71%), Positives = 121/145 (83%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ RFI E+ LPHLL YGPPGTGKT+TILACAR+LY + +F +MVLELNASDDRGI IVR
Sbjct: 3 VQRFISEDRLPHLLLYGPPGTGKTSTILACARQLYREREFGSMVLELNASDDRGIDIVRG 62
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYLSKI P
Sbjct: 63 PILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIP 122
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
A+QSRCTRFRFGPL L++ RL +
Sbjct: 123 ALQSRCTRFRFGPLTPELMVPRLQH 147
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/194 (48%), Positives = 125/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL +VI++E V+VT DG
Sbjct: 101 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQEEGVDVTEDG 160
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+ ++T +E + LD +++
Sbjct: 161 MKALVTLSSGDMRRALNILQSTTMAFG-KVTEENVYTCTGHPLESDIANILDWMLNQDFS 219
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
QDI++ I + P S+ + L++K++DIEYRLAAGTSEKI
Sbjct: 220 TAYRKITELKTLKGLALQDILTEIHLFVHRVDFPPSIRIQLLIKLADIEYRLAAGTSEKI 279
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 280 QLSSLIAAFQVTRD 293
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 93/179 (51%), Gaps = 54/179 (30%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRKL---- 226
VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR +
Sbjct: 46 VLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFT 105
Query: 227 -----------------------------PVTP--------------------DGKKAII 237
P+TP DG KA++
Sbjct: 106 ENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVIQEEGVDVTEDGMKALV 165
Query: 238 DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYK 296
LS GDMR+ LNILQS A +V E+ VY G+P +++I NIL W+LN+ Y+
Sbjct: 166 TLSSGDMRRALNILQSTTMAFG-KVTEENVYTCTGHPLESDIANILDWMLNQDFSTAYR 223
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 64/90 (71%), Gaps = 9/90 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y KI E+K KGLAL DILTEI L VHR++ P S+ + L++K++DI
Sbjct: 208 NILDWMLNQDFSTAYRKITELKTLKGLALQDILTEIHLFVHRVDFPPSIRIQLLIKLADI 267
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
EYRLAAGTSEKIQLS+LIAAF RD + A
Sbjct: 268 EYRLAAGTSEKIQLSSLIAAFQVTRDLIVA 297
>gi|431914245|gb|ELK15503.1| Replication factor C subunit 5 [Pteropus alecto]
Length = 345
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 40 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 99
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 100 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 159
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 160 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 189
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/198 (46%), Positives = 126/198 (63%), Gaps = 32/198 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 143 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 202
Query: 61 KKAII----DLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVS 116
KA++ LS GDMR+ LNILQS + A +V E+T++T ++ + LD +++
Sbjct: 203 MKALVTLSKTLSSGDMRRALNILQSTSMAFG-KVTEETVYTCTGHPLKSDIANILDWMLN 261
Query: 117 H--------------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGT 149
DI++ I + P S+ + L+ KM+DIEYRL+ GT
Sbjct: 262 QDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGT 321
Query: 150 SEKIQLSALIAAFNSARD 167
SEKIQLS+LIAAF RD
Sbjct: 322 SEKIQLSSLIAAFQVTRD 339
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 130/256 (50%), Gaps = 72/256 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 24 VEKYRPQALNDLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 74
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 75 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 134
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 135 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 194
Query: 231 ------DGKKAII----DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEIT 280
DG KA++ LS GDMR+ LNILQS + A +V E+TVY G+P K++I
Sbjct: 195 KVDISEDGMKALVTLSKTLSSGDMRRALNILQSTSMAFG-KVTEETVYTCTGHPLKSDIA 253
Query: 281 NILRWLLNESMDLCYK 296
NIL W+LN+ Y+
Sbjct: 254 NILDWMLNQDFTTAYR 269
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 254 NILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI 313
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GTSEKIQLS+LIAAF RD
Sbjct: 314 EYRLSVGTSEKIQLSSLIAAFQVTRD 339
>gi|351694763|gb|EHA97681.1| Replication factor C subunit 5 [Heterocephalus glaber]
Length = 340
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 39 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 98
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 99 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 158
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 159 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 125/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++VI++EKV+V+ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKEEKVDVSEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 260
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L+ KM+DIEYRL+ GTSEKI
Sbjct: 261 TAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKI 320
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 321 QLSSLIAAFQVTRD 334
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKEE 193
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 194 KVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 252
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 253 WMLNQDFTTAYR 264
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 249 NILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI 308
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GTSEKIQLS+LIAAF RD
Sbjct: 309 EYRLSVGTSEKIQLSSLIAAFQVTRD 334
>gi|410976710|ref|XP_003994756.1| PREDICTED: replication factor C subunit 5 [Felis catus]
Length = 340
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 39 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 98
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 99 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 158
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 159 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 126/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 260
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
QDI++ I + P S+ V L+ KM+DIEYRL+ GT+EKI
Sbjct: 261 TAYRNITELKTLKGLALQDILTEIHLFVHRVDFPSSVRVHLLTKMADIEYRLSVGTNEKI 320
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 321 QLSSLIAAFQVTRD 334
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 129/253 (50%), Gaps = 70/253 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + S ++A
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLL----------YGPPGTGKTSTILA 72
Query: 161 AFNSARDKLE----VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
E VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT
Sbjct: 73 CAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQ 132
Query: 217 DAQNALRRKL---------------------------------PVTP------------- 230
DAQNALRR + P+TP
Sbjct: 133 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 192
Query: 231 -------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 193 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 251
Query: 284 RWLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 252 DWMLNQDFTTAYR 264
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ V L+ KM+DI
Sbjct: 249 NILDWMLNQDFTTAYRNITELKTLKGLALQDILTEIHLFVHRVDFPSSVRVHLLTKMADI 308
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GT+EKIQLS+LIAAF RD
Sbjct: 309 EYRLSVGTNEKIQLSSLIAAFQVTRD 334
>gi|348584884|ref|XP_003478202.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Cavia
porcellus]
Length = 337
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 39 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 98
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 99 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 158
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 159 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/192 (49%), Positives = 125/192 (65%), Gaps = 27/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+++EKV+++ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVKEEKVDISEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEK--------------- 105
KA++ LS GDMR+ LNILQS A +V E+T++T ++
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 260
Query: 106 --YRP-STLDELVSHQDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
YR TL L H DI++ I + P S+ + L+ KM+DIEYRL+ GTSEKIQL
Sbjct: 261 TAYRKLKTLKGLALH-DILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQL 319
Query: 156 SALIAAFNSARD 167
S+LIAAF RD
Sbjct: 320 SSLIAAFQVTRD 331
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVKEE 193
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 252
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 253 WMLNQDFTTAYR 264
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 6/83 (7%)
Query: 448 NIIIWYIK------IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYR 501
NI+ W + +++K KGLAL DILTEI L VHR++ P S+ + L+ KM+DIEYR
Sbjct: 249 NILDWMLNQDFTTAYRKLKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYR 308
Query: 502 LAAGTSEKIQLSALIAAFNSARD 524
L+ GTSEKIQLS+LIAAF RD
Sbjct: 309 LSVGTSEKIQLSSLIAAFQVTRD 331
>gi|387849459|ref|NP_001248591.1| replication factor C subunit 5 [Macaca mulatta]
gi|402887809|ref|XP_003907273.1| PREDICTED: replication factor C subunit 5 [Papio anubis]
gi|355564724|gb|EHH21224.1| hypothetical protein EGK_04238 [Macaca mulatta]
gi|355759033|gb|EHH61566.1| hypothetical protein EGM_19495 [Macaca fascicularis]
gi|380786591|gb|AFE65171.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
gi|383414287|gb|AFH30357.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
Length = 340
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 39 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 98
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 99 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 158
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 159 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 125/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 260
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L+ KM+DIEYRL+ GT+EKI
Sbjct: 261 TAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKI 320
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 321 QLSSLIAAFQVTRD 334
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 252
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 253 WMLNQDFTTAYR 264
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 249 NILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI 308
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GT+EKIQLS+LIAAF RD
Sbjct: 309 EYRLSVGTNEKIQLSSLIAAFQVTRD 334
>gi|110625924|ref|NP_082404.1| replication factor C subunit 5 [Mus musculus]
gi|30913281|sp|Q9D0F6.1|RFC5_MOUSE RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|12847646|dbj|BAB27652.1| unnamed protein product [Mus musculus]
gi|57242935|gb|AAH89001.1| Replication factor C (activator 1) 5 [Mus musculus]
gi|74206797|dbj|BAE41638.1| unnamed protein product [Mus musculus]
gi|148687857|gb|EDL19804.1| mCG8761 [Mus musculus]
Length = 339
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 38 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 97
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 98 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 157
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 158 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 187
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 124/194 (63%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+++E V+++ DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 200
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 201 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANILDWMLNQDFT 259
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ + + P S+ + L+ KM+DIEYRL+ GTSEKI
Sbjct: 260 TAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKI 319
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 320 QLSSLIAAFQVTRD 333
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 107/252 (42%), Positives = 129/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL +L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 22 VEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 72
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 73 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 132
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 133 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEE 192
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P KT+I NIL
Sbjct: 193 NVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANILD 251
Query: 285 WLLNESMDLCYK 296
W+LN+ YK
Sbjct: 252 WMLNQDFTTAYK 263
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTE+ L VHR++ P S+ + L+ KM+DI
Sbjct: 248 NILDWMLNQDFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADI 307
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GTSEKIQLS+LIAAF RD
Sbjct: 308 EYRLSVGTSEKIQLSSLIAAFQVTRD 333
>gi|426247312|ref|XP_004017430.1| PREDICTED: replication factor C subunit 5 isoform 1 [Ovis aries]
Length = 336
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 38 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 97
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 98 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 157
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 158 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 187
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/192 (50%), Positives = 125/192 (65%), Gaps = 27/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 200
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEK--------------- 105
KA+I LS GDMR+ LNILQS A +V E+T++T ++
Sbjct: 201 MKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 259
Query: 106 --YRP-STLDELVSHQDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
YR TL L H DI++ I + P S+ + L+ KM+DIEYRL+ GTSEKIQL
Sbjct: 260 TAYRKLKTLKGLALH-DILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQL 318
Query: 156 SALIAAFNSARD 167
S+LIAAF RD
Sbjct: 319 SSLIAAFQVTRD 330
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 107/252 (42%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD+L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 22 VEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 72
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 73 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 132
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 133 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 192
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA+I LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 193 KVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 251
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 252 WMLNQDFTTAYR 263
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 6/83 (7%)
Query: 448 NIIIWYIK------IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYR 501
NI+ W + +++K KGLAL DILTEI L VHR++ P S+ + L+ KM+DIEYR
Sbjct: 248 NILDWMLNQDFTTAYRKLKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYR 307
Query: 502 LAAGTSEKIQLSALIAAFNSARD 524
L+ GTSEKIQLS+LIAAF RD
Sbjct: 308 LSVGTSEKIQLSSLIAAFQVTRD 330
>gi|344295239|ref|XP_003419321.1| PREDICTED: replication factor C subunit 5 [Loxodonta africana]
Length = 343
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 39 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 98
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 99 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 158
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 159 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 126/198 (63%), Gaps = 33/198 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEK--------------- 105
KA++ LS GDMR+ LNILQS A +V E+T++T ++
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILEWMLNQDFT 260
Query: 106 --YRP-------STLDELVSHQDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGT 149
YR TL L H DI++ I + P S+ + L++KM+DIEYRL+ GT
Sbjct: 261 TAYRNILYIMELKTLKGLALH-DILTEIHLFVHRVDFPSSVRIHLLIKMADIEYRLSLGT 319
Query: 150 SEKIQLSALIAAFNSARD 167
+EKIQLS+LIAAF RD
Sbjct: 320 NEKIQLSSLIAAFQVTRD 337
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILE 252
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 253 WMLNQDFTTAYR 264
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 55/69 (79%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I E+K KGLAL DILTEI L VHR++ P S+ + L++KM+DIEYRL+ GT+EKIQLS+L
Sbjct: 269 IMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLIKMADIEYRLSLGTNEKIQLSSL 328
Query: 516 IAAFNSARD 524
IAAF RD
Sbjct: 329 IAAFQVTRD 337
>gi|296213044|ref|XP_002753107.1| PREDICTED: replication factor C subunit 5 [Callithrix jacchus]
gi|403281561|ref|XP_003932252.1| PREDICTED: replication factor C subunit 5 [Saimiri boliviensis
boliviensis]
Length = 340
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 39 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 98
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 99 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 158
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 159 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 125/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 260
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L+ KM+DIEYRL+ GT+EKI
Sbjct: 261 TAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKI 320
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 321 QLSSLIAAFQVTRD 334
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 252
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 253 WMLNQDFTTAYR 264
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 249 NILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI 308
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GT+EKIQLS+LIAAF RD
Sbjct: 309 EYRLSVGTNEKIQLSSLIAAFQVTRD 334
>gi|354466990|ref|XP_003495954.1| PREDICTED: replication factor C subunit 5 [Cricetulus griseus]
Length = 338
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 37 DILSSIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 96
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 97 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 156
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 157 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 186
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/194 (46%), Positives = 124/194 (63%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+++E V+++ DG
Sbjct: 140 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 199
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA+I LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 200 MKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANILDWMLNQDFT 258
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ + + P S+ + L+ KM+DIEYRL+ GTSEKI
Sbjct: 259 TAYRHIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKI 318
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 319 QLSSLIAAFQVTRD 332
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 106/252 (42%), Positives = 129/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL +L+SHQDI+S+I+ I E L L+L G + I L
Sbjct: 21 VEKYRPQTLADLISHQDILSSIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 71
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 72 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 131
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 132 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEE 191
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA+I LS GDMR+ LNILQS A +V E+TVY G+P KT+I NIL
Sbjct: 192 NVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANILD 250
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 251 WMLNQDFTTAYR 262
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTE+ L VHR++ P S+ + L+ KM+DI
Sbjct: 247 NILDWMLNQDFTTAYRHIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADI 306
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GTSEKIQLS+LIAAF RD
Sbjct: 307 EYRLSVGTSEKIQLSSLIAAFQVTRD 332
>gi|23271821|gb|AAH23674.1| Rfc5 protein, partial [Mus musculus]
Length = 333
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 32 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 91
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 92 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 151
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 152 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 181
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 124/194 (63%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+++E V+++ DG
Sbjct: 135 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 195 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANILDWMLNQDFT 253
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ + + P S+ + L+ KM+DIEYRL+ GTSEKI
Sbjct: 254 TAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKI 313
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 314 QLSSLIAAFQVTRD 327
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/247 (41%), Positives = 124/247 (50%), Gaps = 68/247 (27%)
Query: 108 PSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 165
P TL +L+SHQDI+STI+ I E L L+L G + I L A
Sbjct: 21 PQTLADLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LACAKQLY 71
Query: 166 RDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
+DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT DAQNAL
Sbjct: 72 KDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNAL 131
Query: 223 RRKL---------------------------------PVTP------------------- 230
RR + P+TP
Sbjct: 132 RRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDIS 191
Query: 231 -DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNE 289
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P KT+I NIL W+LN+
Sbjct: 192 EDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANILDWMLNQ 250
Query: 290 SMDLCYK 296
YK
Sbjct: 251 DFTTAYK 257
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 61/90 (67%), Gaps = 9/90 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTE+ L VHR++ P S+ + L+ KM+DI
Sbjct: 242 NILDWMLNQDFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADI 301
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
EYRL+ GTSEKIQLS+LIAAF RD + A
Sbjct: 302 EYRLSVGTSEKIQLSSLIAAFQVTRDLIVA 331
>gi|440912210|gb|ELR61801.1| Replication factor C subunit 5 [Bos grunniens mutus]
Length = 340
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 38 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 97
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 98 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 157
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 158 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 187
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 98/196 (50%), Positives = 126/196 (64%), Gaps = 31/196 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 200
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEK--------------- 105
KA+I LS GDMR+ LNILQS A +V E+T++T ++
Sbjct: 201 MKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 259
Query: 106 --YRPS-----TLDELVSHQDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSE 151
YR + TL L H DI++ I + P S+ + L+ KM+DIEYRLA GTSE
Sbjct: 260 TAYRNNIMELKTLKGLALH-DILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLAVGTSE 318
Query: 152 KIQLSALIAAFNSARD 167
KIQLS+LIAAF RD
Sbjct: 319 KIQLSSLIAAFQVTRD 334
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/255 (41%), Positives = 130/255 (50%), Gaps = 70/255 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD+L+SHQDI+STI+ I E L L+L G + S ++A
Sbjct: 22 VEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLL----------YGPPGTGKTSTILA 71
Query: 161 AFNSARDKLE----VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
E VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT
Sbjct: 72 CAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQ 131
Query: 217 DAQNALRRKL---------------------------------PVTP------------- 230
DAQNALRR + P+TP
Sbjct: 132 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 191
Query: 231 -------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
DG KA+I LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 192 EKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 250
Query: 284 RWLLNESMDLCYKIN 298
W+LN+ Y+ N
Sbjct: 251 DWMLNQDFTTAYRNN 265
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 59/87 (67%), Gaps = 10/87 (11%)
Query: 448 NIIIWYIK----------IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSD 497
NI+ W + I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+D
Sbjct: 248 NILDWMLNQDFTTAYRNNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMAD 307
Query: 498 IEYRLAAGTSEKIQLSALIAAFNSARD 524
IEYRLA GTSEKIQLS+LIAAF RD
Sbjct: 308 IEYRLAVGTSEKIQLSSLIAAFQVTRD 334
>gi|444723208|gb|ELW63869.1| Replication factor C subunit 5 [Tupaia chinensis]
Length = 341
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 40 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 99
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 100 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 159
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 160 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 189
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/194 (47%), Positives = 121/194 (62%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+ +E V++T DG
Sbjct: 143 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEENVDITEDG 202
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA+I LS GDMR+ LNILQS A +V E+T+ T + + LD +++
Sbjct: 203 MKALITLSSGDMRRALNILQSTNMAFG-KVTEETVHTCTGHPLRSDIANILDWMLNQDFT 261
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ V L+ KM+DIEYRL+ GT+EKI
Sbjct: 262 TAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRVHLLTKMADIEYRLSVGTNEKI 321
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 322 QLSSLIAAFQVTRD 335
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 24 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 74
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 75 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 134
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 135 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEE 194
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA+I LS GDMR+ LNILQS A +V E+TV+ G+P +++I NIL
Sbjct: 195 NVDITEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVHTCTGHPLRSDIANILD 253
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 254 WMLNQDFTTAYR 265
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ V L+ KM+DI
Sbjct: 250 NILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRVHLLTKMADI 309
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GT+EKIQLS+LIAAF RD
Sbjct: 310 EYRLSVGTNEKIQLSSLIAAFQVTRD 335
>gi|157821267|ref|NP_001100616.1| replication factor C subunit 5 [Rattus norvegicus]
gi|149063502|gb|EDM13825.1| replication factor C (activator 1) 5 (predicted) [Rattus
norvegicus]
gi|197245812|gb|AAI68902.1| Replication factor C (activator 1) 5 [Rattus norvegicus]
Length = 338
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 37 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 96
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 97 DIVRGPILSFASTRTIFKRGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 156
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 157 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 186
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 124/194 (63%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+++E V+++ DG
Sbjct: 140 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 199
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 200 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANILDWMLNQDFT 258
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ + + P S+ + L+ KM+DIEYRL+ GTSEKI
Sbjct: 259 TAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRMHLLTKMADIEYRLSVGTSEKI 318
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 319 QLSSLIAAFQVTRD 332
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 107/252 (42%), Positives = 129/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL +L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 21 VEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 71
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 72 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKRGFKLVILDEADAMTQD 131
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 132 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEE 191
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P KT+I NIL
Sbjct: 192 NVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANILD 250
Query: 285 WLLNESMDLCYK 296
W+LN+ YK
Sbjct: 251 WMLNQDFTTAYK 262
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTE+ L VHR++ P S+ + L+ KM+DI
Sbjct: 247 NILDWMLNQDFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRMHLLTKMADI 306
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GTSEKIQLS+LIAAF RD
Sbjct: 307 EYRLSVGTSEKIQLSSLIAAFQVTRD 332
>gi|281344058|gb|EFB19642.1| hypothetical protein PANDA_008377 [Ailuropoda melanoleuca]
Length = 318
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 17 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 76
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 77 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 136
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 137 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 166
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 123/194 (63%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++VI++EKV+++ DG
Sbjct: 120 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKEEKVDLSEDG 179
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEK--------------- 105
KA++ L+ GDMR+ LNILQS A +V E+T++T ++
Sbjct: 180 MKALVTLASGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 238
Query: 106 --YRP----STLDELVSHQDIIST------IEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
YR TL L H + T ++ P S+ V L+ KM+DIEYRL+ GT+EKI
Sbjct: 239 TAYRNITELKTLKGLALHDILTETHLFVHRVDFPSSVRVHLLTKMADIEYRLSVGTNEKI 298
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 299 QLSSLIAAFQVTRD 312
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 1 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 51
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 52 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 111
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 112 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKEE 171
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ L+ GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 172 KVDLSEDGMKALVTLASGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 230
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 231 WMLNQDFTTAYR 242
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 58/86 (67%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTE L VHR++ P S+ V L+ KM+DI
Sbjct: 227 NILDWMLNQDFTTAYRNITELKTLKGLALHDILTETHLFVHRVDFPSSVRVHLLTKMADI 286
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GT+EKIQLS+LIAAF RD
Sbjct: 287 EYRLSVGTNEKIQLSSLIAAFQVTRD 312
>gi|395744928|ref|XP_002823879.2| PREDICTED: replication factor C subunit 5 isoform 3 [Pongo abelii]
Length = 340
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 112/178 (62%), Positives = 134/178 (75%), Gaps = 11/178 (6%)
Query: 274 PTKTEITNILRWL-------LNE---SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P T+I N L W+ LN+ D+ I +FI E+ LPHLL YGPPGTGKT+TI
Sbjct: 12 PAATKIRN-LPWVEKYRPQTLNDLISHQDILSTIQKFIIEDRLPHLLLYGPPGTGKTSTI 70
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
LACA++LY +F +MVLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAM
Sbjct: 71 LACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAM 130
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T DAQNALRR+IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 131 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 92/194 (47%), Positives = 126/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+V+ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDVSEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 260
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L++KM+DIEYRL+ GT+EKI
Sbjct: 261 TAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLIKMADIEYRLSVGTNEKI 320
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 321 QLSSLIAAFQVTRD 334
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFIIEDRLPHLLLYGPP-----GTGKTSTI----LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 194 KVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 252
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 253 WMLNQDFTTAYR 264
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 60/86 (69%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L++KM+DI
Sbjct: 249 NILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLIKMADI 308
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GT+EKIQLS+LIAAF RD
Sbjct: 309 EYRLSVGTNEKIQLSSLIAAFQVTRD 334
>gi|162312520|ref|XP_001713099.1| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe 972h-]
gi|13431787|sp|O14003.2|RFC3_SCHPO RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3
gi|4468733|emb|CAB38106.1| replication factor C subunit [Schizosaccharomyces pombe]
gi|5688939|dbj|BAA82745.1| Rfc3 [Schizosaccharomyces pombe]
gi|5688941|dbj|BAA82746.1| Rfc3 [Schizosaccharomyces pombe]
gi|159884003|emb|CAB39134.2| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe]
Length = 342
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 133/296 (44%), Positives = 174/296 (58%), Gaps = 64/296 (21%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + +FI N +PH+LFYGPPGTGKT+TILACARK+Y + ++ELNASDDRGI
Sbjct: 42 DIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYG-PNYRNQLMELNASDDRGI 100
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
VR+QI FAST+ + S++K+IILDEADAMT AQNALRR+IEK+T NVRFCIICNY+
Sbjct: 101 DAVREQIKNFASTRQIFASTFKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYI 160
Query: 412 SKIPPAIQSRCTRFRFGPL----------------------DSSLIMSRLD--------- 440
+KI PAIQSRCTRFRF PL D+ + + RL
Sbjct: 161 NKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDMRKALN 220
Query: 441 --------YD-----------------DISFF-------NIIIWYIKIQEIKIEKGLALT 468
YD DI +F +I + I IK +KGLAL
Sbjct: 221 ILQACHAAYDHIDVSAIYNCVGHPHPSDIDYFLKSIMNDEFVIAFNTISSIKQQKGLALQ 280
Query: 469 DILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
DILT I + LEI + + ++ +++ IE+R++ G SEKIQLSA+IA+ + D
Sbjct: 281 DILTCIFEALDELEIKPNAKIFILDQLATIEHRMSFGCSEKIQLSAMIASIKTGVD 336
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 117/194 (60%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNY++KI+PAIQSRCTRFRF PL I +D+VI+ E N+ PD
Sbjct: 144 IEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDA 203
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL----VSRVEKYRPSTL-DELV 115
K A++ LS GDMRK LNILQ+ A+ D ++ I+ + S ++ + S + DE V
Sbjct: 204 KMAVLRLSKGDMRKALNILQACHAAY-DHIDVSAIYNCVGHPHPSDIDYFLKSIMNDEFV 262
Query: 116 ---------------SHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ QDI++ I EI + + ++ +++ IE+R++ G SEKI
Sbjct: 263 IAFNTISSIKQQKGLALQDILTCIFEALDELEIKPNAKIFILDQLATIEHRMSFGCSEKI 322
Query: 154 QLSALIAAFNSARD 167
QLSA+IA+ + D
Sbjct: 323 QLSAMIASIKTGVD 336
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 124/247 (50%), Gaps = 61/247 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE-IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
VEKYRP+ L+++VSH+DIIST+E S V +L + GT + + A
Sbjct: 26 VEKYRPANLEDVVSHKDIISTLEKFISSNRVPHML------FYGPPGTGKTSTILACARK 79
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ +++ELNASDDRGI VR+QI FAST+ + S++K+IILDEADAMT AQNA
Sbjct: 80 IYGPNYRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAMTLAAQNA 139
Query: 222 LRR-----------------------------------KLP------------------V 228
LRR LP +
Sbjct: 140 LRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNI 199
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
PD K A++ LS GDMRK LNILQ+ A+ D ++ +YN VG+P ++I L+ ++N
Sbjct: 200 DPDAKMAVLRLSKGDMRKALNILQACHAAY-DHIDVSAIYNCVGHPHPSDIDYFLKSIMN 258
Query: 289 ESMDLCY 295
+ + +
Sbjct: 259 DEFVIAF 265
>gi|345790910|ref|XP_534696.3| PREDICTED: replication factor C subunit 5 [Canis lupus familiaris]
Length = 339
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 38 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 97
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 98 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 157
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 158 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 187
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 124/194 (63%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+ +EKV+++ DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEEKVDLSEDG 200
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 201 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 259
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ V L+ KM+DIEYRL+ GT+EKI
Sbjct: 260 TAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRVHLLTKMADIEYRLSVGTNEKI 319
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 320 QLSSLIAAFQVTRD 333
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 22 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 72
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 73 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 132
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 133 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEE 192
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 193 KVDLSEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 251
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 252 WMLNQDFTTAYR 263
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ V L+ KM+DI
Sbjct: 248 NILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRVHLLTKMADI 307
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GT+EKIQLS+LIAAF RD
Sbjct: 308 EYRLSVGTNEKIQLSSLIAAFQVTRD 333
>gi|194306567|ref|NP_853556.2| replication factor C subunit 5 isoform 2 [Homo sapiens]
gi|193787684|dbj|BAG52890.1| unnamed protein product [Homo sapiens]
Length = 319
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 103/150 (68%), Positives = 124/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI+E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 18 DILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 77
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
I+R I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 78 DIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 137
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 138 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 167
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 125/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 121 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 180
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 181 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 239
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L+ KM+DIEYRL+ GT+EKI
Sbjct: 240 TAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKI 299
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 300 QLSSLIAAFQVTRD 313
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 129/253 (50%), Gaps = 70/253 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + S ++A
Sbjct: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLL----------YGPPGTGKTSTILA 51
Query: 161 AFNSARDKLE----VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
E VLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAMT
Sbjct: 52 CAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQ 111
Query: 217 DAQNALRRKL---------------------------------PVTP------------- 230
DAQNALRR + P+TP
Sbjct: 112 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 171
Query: 231 -------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 172 EKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 230
Query: 284 RWLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 231 DWMLNQDFTTAYR 243
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 61/90 (67%), Gaps = 9/90 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 228 NILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI 287
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
EYRL+ GT+EKIQLS+LIAAF RD + A
Sbjct: 288 EYRLSVGTNEKIQLSSLIAAFQVTRDLIVA 317
>gi|301768619|ref|XP_002919725.1| PREDICTED: replication factor C subunit 5-like [Ailuropoda
melanoleuca]
Length = 340
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 39 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 98
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 99 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 158
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 159 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 123/194 (63%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++VI++EKV+++ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKEEKVDLSEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEK--------------- 105
KA++ L+ GDMR+ LNILQS A +V E+T++T ++
Sbjct: 202 MKALVTLASGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 260
Query: 106 --YRP----STLDELVSHQDIIST------IEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
YR TL L H + T ++ P S+ V L+ KM+DIEYRL+ GT+EKI
Sbjct: 261 TAYRNITELKTLKGLALHDILTETHLFVHRVDFPSSVRVHLLTKMADIEYRLSVGTNEKI 320
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 321 QLSSLIAAFQVTRD 334
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKEE 193
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ L+ GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 194 KVDLSEDGMKALVTLASGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 252
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 253 WMLNQDFTTAYR 264
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 58/86 (67%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTE L VHR++ P S+ V L+ KM+DI
Sbjct: 249 NILDWMLNQDFTTAYRNITELKTLKGLALHDILTETHLFVHRVDFPSSVRVHLLTKMADI 308
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GT+EKIQLS+LIAAF RD
Sbjct: 309 EYRLSVGTNEKIQLSSLIAAFQVTRD 334
>gi|432872493|ref|XP_004072116.1| PREDICTED: replication factor C subunit 5-like [Oryzias latipes]
Length = 340
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RF+ E+ LPHLL YGPPGTGKT+TILACAR+LY +FN+MVLELNASDDRGI
Sbjct: 33 DILSTIQRFVREDRLPHLLLYGPPGTGKTSTILACARQLYKDKEFNSMVLELNASDDRGI 92
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 93 DVVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 152
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL + ++ RL +
Sbjct: 153 SKIIPALQSRCTRFRFGPLSADQMIPRLRH 182
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/258 (38%), Positives = 129/258 (50%), Gaps = 80/258 (31%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD+L+SH+DI+STI+ + E L L+L G + S ++A
Sbjct: 17 VEKYRPQKLDDLISHRDILSTIQRFVREDRLPHLLL----------YGPPGTGKTSTILA 66
Query: 161 A---------FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEA 211
FNS VLELNASDDRGI +VR I FAST+T+ K +KL+ILDEA
Sbjct: 67 CARQLYKDKEFNSM-----VLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEA 121
Query: 212 DAMTNDAQNALRRKL---------------------------------PVTPD------- 231
DAMT DAQNALRR + P++ D
Sbjct: 122 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSADQMIPRLR 181
Query: 232 -------------GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTE 278
G KAI+ LS GDMR+ LN+LQS + A+ +V ED+VY G P +++
Sbjct: 182 HVIQEESIDITEDGMKAIVTLSSGDMRRSLNVLQSTSMAYG-KVTEDSVYTCTGQPLRSD 240
Query: 279 ITNILRWLLNESMDLCYK 296
I NIL W LN+ YK
Sbjct: 241 IANILDWCLNKDFTSAYK 258
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 114/199 (57%), Gaps = 33/199 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL + ++ RL +VI++E +++T DG
Sbjct: 136 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSADQMIPRLRHVIQEESIDITEDG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEK--------------- 105
KAI+ LS GDMR+ LN+LQS + A+ +V ED+++T +
Sbjct: 196 MKAIVTLSSGDMRRSLNVLQSTSMAYG-KVTEDSVYTCTGQPLRSDIANILDWCLNKDFT 254
Query: 106 --YRP----STLDELVSH------QDIISTIEIPESMLVDLVLKMSD-----IEYRLAAG 148
Y+ TL L H ++ ++ P + K +D +RLA+G
Sbjct: 255 SAYKQILQLKTLKGLALHDILTELHLLVHRVDFPPATRXXXXYKCADASFFTFRHRLASG 314
Query: 149 TSEKIQLSALIAAFNSARD 167
T EKIQLS+++ AF RD
Sbjct: 315 TDEKIQLSSMVGAFQEVRD 333
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 53/91 (58%), Gaps = 14/91 (15%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSD- 497
NI+ W Y +I ++K KGLAL DILTE+ LLVHR++ P + K +D
Sbjct: 243 NILDWCLNKDFTSAYKQILQLKTLKGLALHDILTELHLLVHRVDFPPATRXXXXYKCADA 302
Query: 498 ----IEYRLAAGTSEKIQLSALIAAFNSARD 524
+RLA+GT EKIQLS+++ AF RD
Sbjct: 303 SFFTFRHRLASGTDEKIQLSSMVGAFQEVRD 333
>gi|291407082|ref|XP_002719834.1| PREDICTED: replication factor C 5 [Oryctolagus cuniculus]
Length = 342
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 113/186 (60%), Positives = 137/186 (73%), Gaps = 15/186 (8%)
Query: 269 NSVGYPTKTEITNILRWL----------LNESM---DLCYKINRFIDENELPHLLFYGPP 315
NS+ PT+ +I R L LN+ + D+ I +FI E+ LPHLL YGPP
Sbjct: 7 NSISVPTQVDIGG--RQLDRVEKYRPQTLNDLISHRDILSTIQKFISEDRLPHLLLYGPP 64
Query: 316 GTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLI 375
GTGKT+TILACA++LY +F +MVLELNASDDRGI IVR I FAST+T+ K +KL+
Sbjct: 65 GTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLV 124
Query: 376 ILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLI 435
ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L+
Sbjct: 125 ILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELM 184
Query: 436 MSRLDY 441
+ RL++
Sbjct: 185 VPRLEH 190
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/194 (48%), Positives = 124/194 (63%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV V+ DG
Sbjct: 144 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVYVSEDG 203
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA+I LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 204 MKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 262
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L+ KM+DIEYRLA GT+EKI
Sbjct: 263 TAYRNIMELKTVKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLAVGTNEKI 322
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 323 QLSSLIAAFQVTRD 336
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 106/253 (41%), Positives = 131/253 (51%), Gaps = 68/253 (26%)
Query: 102 RVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
RVEKYRP TL++L+SH+DI+STI+ I E L L+L G + I L
Sbjct: 24 RVEKYRPQTLNDLISHRDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LA 74
Query: 160 AAFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT
Sbjct: 75 CAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQ 134
Query: 217 DAQNALRRKL---------------------------------PVTP------------- 230
DAQNALRR + P+TP
Sbjct: 135 DAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEE 194
Query: 231 -------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
DG KA+I LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 195 EKVYVSEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANIL 253
Query: 284 RWLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 254 DWMLNQDFTTAYR 266
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 61/90 (67%), Gaps = 9/90 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 251 NILDWMLNQDFTTAYRNIMELKTVKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI 310
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
EYRLA GT+EKIQLS+LIAAF RD + A
Sbjct: 311 EYRLAVGTNEKIQLSSLIAAFQVTRDLIVA 340
>gi|355716188|gb|AES05532.1| replication factor C 5, 36.5kDa [Mustela putorius furo]
Length = 337
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 59 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 118
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 119 EIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 178
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 179 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 208
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/249 (40%), Positives = 128/249 (51%), Gaps = 62/249 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L+
Sbjct: 43 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI-LACAKQ 96
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT DAQN
Sbjct: 97 LYKDKEFGSMVLELNASDDRGIEIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQN 156
Query: 221 ALRRKL---------------------------------PVTP----------------- 230
ALRR + P+TP
Sbjct: 157 ALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEEEKVD 216
Query: 231 ---DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL W+L
Sbjct: 217 LSEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWML 275
Query: 288 NESMDLCYK 296
N+ Y+
Sbjct: 276 NQDFTTAYR 284
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 111/177 (62%), Gaps = 28/177 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++VIE+EKV+++ DG
Sbjct: 162 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIEEEKVDLSEDG 221
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 222 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 280
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTS 150
DI++ I + P S+ V L+ KM+DIEYRL+ GT+
Sbjct: 281 TAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRVHLLAKMADIEYRLSVGTN 337
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 9/69 (13%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ V L+ KM+DI
Sbjct: 269 NILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRVHLLAKMADI 328
Query: 499 EYRLAAGTS 507
EYRL+ GT+
Sbjct: 329 EYRLSVGTN 337
>gi|115496354|ref|NP_001068826.1| replication factor C subunit 5 [Bos taurus]
gi|79160183|gb|AAI08106.1| Replication factor C (activator 1) 5, 36.5kDa [Bos taurus]
gi|296478479|tpg|DAA20594.1| TPA: replication factor C 5 [Bos taurus]
Length = 316
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 38 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 97
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 98 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 157
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 158 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 187
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 126/249 (50%), Gaps = 62/249 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD+L+SHQDI+STI+ I E L L+L Y L+
Sbjct: 22 VEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLL------YGPPGTGKTSTILACAKQ 75
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT DAQN
Sbjct: 76 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQN 135
Query: 221 ALRRKL---------------------------------PVTP----------------- 230
ALRR + P+TP
Sbjct: 136 ALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVD 195
Query: 231 ---DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
DG KA+I LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL W+L
Sbjct: 196 ISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWML 254
Query: 288 NESMDLCYK 296
N+ Y+
Sbjct: 255 NQDFTTAYR 263
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 78/97 (80%), Gaps = 1/97 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 200
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT 97
KA+I LS GDMR+ LNILQS A +V E+T++T
Sbjct: 201 MKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYT 236
>gi|426247314|ref|XP_004017431.1| PREDICTED: replication factor C subunit 5 isoform 2 [Ovis aries]
Length = 316
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 38 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 97
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 98 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 157
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 158 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 187
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 103/249 (41%), Positives = 126/249 (50%), Gaps = 62/249 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD+L+SHQDI+STI+ I E L L+L Y L+
Sbjct: 22 VEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLL------YGPPGTGKTSTILACAKQ 75
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT DAQN
Sbjct: 76 LYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQN 135
Query: 221 ALRRKL---------------------------------PVTP----------------- 230
ALRR + P+TP
Sbjct: 136 ALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVD 195
Query: 231 ---DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
DG KA+I LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL W+L
Sbjct: 196 ISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWML 254
Query: 288 NESMDLCYK 296
N+ Y+
Sbjct: 255 NQDFTTAYR 263
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 78/97 (80%), Gaps = 1/97 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 200
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT 97
KA+I LS GDMR+ LNILQS A +V E+T++T
Sbjct: 201 MKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYT 236
>gi|213514520|ref|NP_001135046.1| replication factor C subunit 5 [Salmo salar]
gi|209738250|gb|ACI69994.1| Replication factor C subunit 5 [Salmo salar]
Length = 335
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/150 (68%), Positives = 124/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLLFYGPPGTGKT+T+LA A++LY + +FNAMVLELNASDDRGI
Sbjct: 33 DILSTIQKFISEDRLPHLLFYGPPGTGKTSTVLASAKQLYKEKEFNAMVLELNASDDRGI 92
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEK+T N RFC+ICNYL
Sbjct: 93 DVVRGPILSFASTRTIFKKGFKLVILDEADAMTRDAQNALRRVIEKYTENTRFCLICNYL 152
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL ++ RL++
Sbjct: 153 SKIIPALQSRCTRFRFGPLSQDQMIPRLEF 182
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 92/194 (47%), Positives = 127/194 (65%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFC+ICNYLSKI PA+QSRCTRFRFGPL ++ RL++VI+QE ++VTPDG
Sbjct: 136 IEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQDQMIPRLEFVIQQESIDVTPDG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT------------LLVSRVEK--- 105
KAI+ LS GDMR+ LNILQS + A+ +V ED ++T +L + K
Sbjct: 196 MKAIVTLSSGDMRRSLNILQSTSMAYG-KVTEDNVYTCTGHPLRSDIANILDWSLNKDFT 254
Query: 106 ------YRPSTLDELVSH------QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ TL L H +I ++ P ++ + L++K++DIEYRLA+GTSEKI
Sbjct: 255 SAYNQILQLKTLKGLALHDILTEVHLLIHRVDFPPAIRMGLLIKLADIEYRLASGTSEKI 314
Query: 154 QLSALIAAFNSARD 167
QLS+++AAF + RD
Sbjct: 315 QLSSMVAAFQAVRD 328
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 124/248 (50%), Gaps = 62/248 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD+L+SH+DI+STI+ I E L L+ Y L++
Sbjct: 17 VEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLF------YGPPGTGKTSTVLASAKQ 70
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ VLELNASDDRGI +VR I FAST+T+ K +KL+ILDEADAMT DAQN
Sbjct: 71 LYKEKEFNAMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAMTRDAQN 130
Query: 221 ALRRKL---------------------------------PVTPD---------------- 231
ALRR + P++ D
Sbjct: 131 ALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQDQMIPRLEFVIQQESID 190
Query: 232 ----GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
G KAI+ LS GDMR+ LNILQS + A+ +V ED VY G+P +++I NIL W L
Sbjct: 191 VTPDGMKAIVTLSSGDMRRSLNILQSTSMAYG-KVTEDNVYTCTGHPLRSDIANILDWSL 249
Query: 288 NESMDLCY 295
N+ Y
Sbjct: 250 NKDFTSAY 257
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 64/86 (74%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y +I ++K KGLAL DILTE+ LL+HR++ P ++ + L++K++DI
Sbjct: 243 NILDWSLNKDFTSAYNQILQLKTLKGLALHDILTEVHLLIHRVDFPPAIRMGLLIKLADI 302
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRLA+GTSEKIQLS+++AAF + RD
Sbjct: 303 EYRLASGTSEKIQLSSMVAAFQAVRD 328
>gi|47115239|emb|CAG28579.1| RFC5 [Homo sapiens]
Length = 340
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/178 (61%), Positives = 134/178 (75%), Gaps = 11/178 (6%)
Query: 274 PTKTEITNILRWL-------LNE---SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P T+I N L W+ LN+ D+ I +FI+E+ LPHLL YGPPGTGKT+TI
Sbjct: 12 PAATKIRN-LPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTI 70
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
LACA++LY +F +MVLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAM
Sbjct: 71 LACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAM 130
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T DAQNALR +IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 131 TQDAQNALRGVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 125/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 260
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L+ KM+DIEYRL+ GT+EKI
Sbjct: 261 TAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKI 320
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 321 QLSSLIAAFQVTRD 334
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 129/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPP-----GTGKTSTI----LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALR---------------------------------RKLPVTP-------------- 230
AQNALR R P+TP
Sbjct: 134 AQNALRGVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 252
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 253 WMLNQDFTTAYR 264
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 249 NILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI 308
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GT+EKIQLS+LIAAF RD
Sbjct: 309 EYRLSVGTNEKIQLSSLIAAFQVTRD 334
>gi|115449001|ref|NP_001048280.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|46805779|dbj|BAD17147.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
Group]
gi|46806135|dbj|BAD17365.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
Group]
gi|113537811|dbj|BAF10194.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|215697717|dbj|BAG91711.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218191668|gb|EEC74095.1| hypothetical protein OsI_09136 [Oryza sativa Indica Group]
Length = 361
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 127/303 (41%), Positives = 175/303 (57%), Gaps = 67/303 (22%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+R +EN LPHLL YGPPGTGKT+TILA ARKLY +Q+ M+LELNASD+RGI
Sbjct: 57 DIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLY-GSQYGNMILELNASDERGI 115
Query: 352 GIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
+VR QI FAS +++ K S K+++LDEADAMT DAQ ALRR+IEK T + RF +IC
Sbjct: 116 DVVRQQIQDFASARSLSFGAKQSVKMVLLDEADAMTKDAQFALRRVIEKHTRSTRFALIC 175
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSR---------LDYDDISF------------- 446
N+++KI PA+QSRCTRFRF PLD + + R LD DD
Sbjct: 176 NHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHIIQSEGLDVDDGGLTALVRLSNGDMRK 235
Query: 447 -FNII-------------------------------IWYIK---------IQEIKIEKGL 465
NI+ W + I ++K+ KGL
Sbjct: 236 ALNILQSTHMASKQITEEAVYLCTGNPMPKDIEQIAYWLLNESFSTSFKCISDMKMRKGL 295
Query: 466 ALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDK 525
AL DI+ E+++ V ++++P + + L+ ++DIEYRL+ ++K+QL ALI+ F AR
Sbjct: 296 ALVDIIREVTMFVFKIQMPSDVRIKLINDLADIEYRLSFACNDKLQLGALISTFTGARTA 355
Query: 526 LEA 528
+ A
Sbjct: 356 MVA 358
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 110/193 (56%), Gaps = 28/193 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK T + RF +ICN+++KI PA+QSRCTRFRF PLD + + RL ++I+ E ++V G
Sbjct: 162 IEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHIIQSEGLDVDDGG 221
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL----LVSRVEKYRPSTLDELVS 116
A++ LS+GDMRK LNILQS A + ++ E+ ++ + +E+ L+E S
Sbjct: 222 LTALVRLSNGDMRKALNILQSTHMA-SKQITEEAVYLCTGNPMPKDIEQIAYWLLNESFS 280
Query: 117 HQ----------------DIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
DII I++P + + L+ ++DIEYRL+ ++K+
Sbjct: 281 TSFKCISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRIKLINDLADIEYRLSFACNDKL 340
Query: 154 QLSALIAAFNSAR 166
QL ALI+ F AR
Sbjct: 341 QLGALISTFTGAR 353
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 118/252 (46%), Gaps = 66/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +L ++ +H+DI+ TI+ E+ L L+L GT + + A+
Sbjct: 41 VEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGP-------PGTGKTSTILAVAR 93
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTND 217
++ +LELNASD+RGI +VR QI FAS +++ K S K+++LDEADAMT D
Sbjct: 94 KLYGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVKMVLLDEADAMTKD 153
Query: 218 AQNALRR----------------------------------------------------- 224
AQ ALRR
Sbjct: 154 AQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHIIQSE 213
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
L V G A++ LS+GDMRK LNILQS A + ++ E+ VY G P +I I
Sbjct: 214 GLDVDDGGLTALVRLSNGDMRKALNILQSTHMA-SKQITEEAVYLCTGNPMPKDIEQIAY 272
Query: 285 WLLNESMDLCYK 296
WLLNES +K
Sbjct: 273 WLLNESFSTSFK 284
>gi|302843932|ref|XP_002953507.1| DNA replication factor C complex subunit 5 [Volvox carteri f.
nagariensis]
gi|300261266|gb|EFJ45480.1| DNA replication factor C complex subunit 5 [Volvox carteri f.
nagariensis]
Length = 356
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 125/293 (42%), Positives = 172/293 (58%), Gaps = 68/293 (23%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I R +EN LPHLL YGPPGTGKT+TILA AR++Y + N M LELNASD+RGI +VR
Sbjct: 60 IKRLTNENRLPHLLLYGPPGTGKTSTILAVARQIYGSSMAN-MTLELNASDERGISVVRQ 118
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
+I FAST+T+ + +KLIILDE DAMTNDAQ ALRR+IEK+T N RFC+ICNY+SK+ P
Sbjct: 119 EIQDFASTRTIFSNKFKLIILDECDAMTNDAQFALRRVIEKYTRNARFCLICNYVSKVIP 178
Query: 417 AIQSRCTRFRF-------------------------GPLDSSLIMS-------------- 437
A+QSRCT+FRF G LD+ + +
Sbjct: 179 ALQSRCTKFRFAPLDPQFVHERLQYVASTERVNLGSGALDAVVELGNGDMRRSLNILQSC 238
Query: 438 RLDYD-----------------DISFFNIIIWYI---------KIQEIKIEKGLALTDIL 471
L +D DIS ++ W + K+ ++++++G+AL D++
Sbjct: 239 HLAFDVVDQQAVYLCTGNPLPADIS--QVLTWLLNEPVADVFEKVTQLQVDRGVALVDVV 296
Query: 472 TEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
E+ + + +P + LV +M+D+E+RLA TSEK+QL LIAAF AR+
Sbjct: 297 RELHPWIMKTSMPVHAKIALVERMADVEHRLAYSTSEKLQLGGLIAAFVKARE 349
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 111/194 (57%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFC+ICNY+SK+ PA+QSRCT+FRF PLD + RL YV E+VN+
Sbjct: 157 IEKYTRNARFCLICNYVSKVIPALQSRCTKFRFAPLDPQFVHERLQYVASTERVNLGSGA 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF---------------TLLVSR--- 102
A+++L +GDMR+ LNILQS A D V++ ++ T L++
Sbjct: 217 LDAVVELGNGDMRRSLNILQSCHLAF-DVVDQQAVYLCTGNPLPADISQVLTWLLNEPVA 275
Query: 103 --VEKYRPSTLDELVSHQDIISTIE-------IPESMLVDLVLKMSDIEYRLAAGTSEKI 153
EK +D V+ D++ + +P + LV +M+D+E+RLA TSEK+
Sbjct: 276 DVFEKVTQLQVDRGVALVDVVRELHPWIMKTSMPVHAKIALVERMADVEHRLAYSTSEKL 335
Query: 154 QLSALIAAFNSARD 167
QL LIAAF AR+
Sbjct: 336 QLGGLIAAFVKARE 349
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 118/244 (48%), Gaps = 63/244 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +LDE+ +H+ II TI+ E+ L L+L GT + + A+
Sbjct: 39 VEKYRPKSLDEVAAHKQIIDTIKRLTNENRLPHLLLYGP-------PGTGKTSTILAVAR 91
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELNASD+RGI +VR +I FAST+T+ + +KLIILDE DAMTNDAQ
Sbjct: 92 QIYGSSMANMTLELNASDERGISVVRQEIQDFASTRTIFSNKFKLIILDECDAMTNDAQF 151
Query: 221 ALRRKL---------------------------------PVTPD---------------- 231
ALRR + P+ P
Sbjct: 152 ALRRVIEKYTRNARFCLICNYVSKVIPALQSRCTKFRFAPLDPQFVHERLQYVASTERVN 211
Query: 232 -GKKA---IIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
G A +++L +GDMR+ LNILQS A D V++ VY G P +I+ +L WLL
Sbjct: 212 LGSGALDAVVELGNGDMRRSLNILQSCHLAF-DVVDQQAVYLCTGNPLPADISQVLTWLL 270
Query: 288 NESM 291
NE +
Sbjct: 271 NEPV 274
>gi|225716862|gb|ACO14277.1| Replication factor C subunit 5 [Esox lucius]
Length = 335
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 102/150 (68%), Positives = 122/150 (81%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLLFYGPPGTGK +TILACA++LY +FNAMVLELNASDDRGI
Sbjct: 33 DILSTIQKFISEDRLPHLLFYGPPGTGKISTILACAKQLYKDKEFNAMVLELNASDDRGI 92
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEK+T N RFC+ICNYL
Sbjct: 93 DVVRGPILSFASTRTIFKKGFKLVILDEADAMTRDAQNALRRVIEKYTENTRFCLICNYL 152
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTR RFGPL ++ RL++
Sbjct: 153 SKIIPALQSRCTRSRFGPLSQDQMIPRLEH 182
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 128/194 (65%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFC+ICNYLSKI PA+QSRCTR RFGPL ++ RL++VI+QE ++VTPDG
Sbjct: 136 IEKYTENTRFCLICNYLSKIIPALQSRCTRSRFGPLSQDQMIPRLEHVIQQESIDVTPDG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT------------LLVSRVEK--- 105
KAI+ LS GDMR+ LNILQS + A+ +V ED ++T +L + K
Sbjct: 196 MKAIVTLSSGDMRRSLNILQSTSMAYG-KVTEDNVYTCTGHPLRSDIANILEWALNKDFS 254
Query: 106 --YRPS----TLDELVSH------QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
Y+ + TL L H +I ++ P ++ + L++K+++IEYRLA+GTSEKI
Sbjct: 255 TAYKQTLQLKTLKGLALHDILTEIHLVIHRVDFPPAIRMGLLIKLAEIEYRLASGTSEKI 314
Query: 154 QLSALIAAFNSARD 167
QLS+++AAF + RD
Sbjct: 315 QLSSMVAAFQAVRD 328
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 131/253 (51%), Gaps = 70/253 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD+L+SH+DI+STI+ I E L L L G ++S ++A
Sbjct: 17 VEKYRPQTLDDLISHKDILSTIQKFISEDRLPHL----------LFYGPPGTGKISTILA 66
Query: 161 -AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
A +DK VLELNASDDRGI +VR I FAST+T+ K +KL+ILDEADAMT
Sbjct: 67 CAKQLYKDKEFNAMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAMTR 126
Query: 217 DAQNALRRKL---------------------------------PVTPD------------ 231
DAQNALRR + P++ D
Sbjct: 127 DAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRSRFGPLSQDQMIPRLEHVIQQ 186
Query: 232 --------GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
G KAI+ LS GDMR+ LNILQS + A+ +V ED VY G+P +++I NIL
Sbjct: 187 ESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYG-KVTEDNVYTCTGHPLRSDIANIL 245
Query: 284 RWLLNESMDLCYK 296
W LN+ YK
Sbjct: 246 EWALNKDFSTAYK 258
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 63/86 (73%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y + ++K KGLAL DILTEI L++HR++ P ++ + L++K+++I
Sbjct: 243 NILEWALNKDFSTAYKQTLQLKTLKGLALHDILTEIHLVIHRVDFPPAIRMGLLIKLAEI 302
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRLA+GTSEKIQLS+++AAF + RD
Sbjct: 303 EYRLASGTSEKIQLSSMVAAFQAVRD 328
>gi|229366198|gb|ACQ58079.1| Replication factor C subunit 5 [Anoplopoma fimbria]
Length = 335
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 99/150 (66%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E++LPHLLFYGPPGTG+T+TILACA++LY + +F +MVLELNASDDRGI
Sbjct: 33 DILSTIQKFISEDKLPHLLFYGPPGTGETSTILACAKQLYKEKEFTSMVLELNASDDRGI 92
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR + FAST+T+ K +KL+ILDEAD MT DAQNALRR+IEK+T N R C+ICNYL
Sbjct: 93 DVVRGPVLSFASTRTIFKRGFKLVILDEADHMTQDAQNALRRVIEKYTENTRLCLICNYL 152
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL ++ RL+Y
Sbjct: 153 SKIIPALQSRCTRFRFGPLSPDQMIPRLEY 182
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 127/194 (65%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N R C+ICNYLSKI PA+QSRCTRFRFGPL ++ RL+YV++QE +++ P G
Sbjct: 136 IEKYTENTRLCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRLEYVVQQESIDINPGG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL--------------------- 99
KAI+ LS GDMR+ LNILQS + A+ +V EDT++T
Sbjct: 196 MKAIVTLSSGDMRRSLNILQSTSMAYG-KVTEDTVYTCTGHPLRSDIANILDWSLNKDFT 254
Query: 100 -----VSRVEKYRPSTLDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ +++ + L+++++ +I ++ P ++ + L++K++DIE+RLA+GT+EKI
Sbjct: 255 SAYKEILQLKTLKGLALNDILTEVHLLIHRVDFPPAIRIGLLIKLADIEHRLASGTNEKI 314
Query: 154 QLSALIAAFNSARD 167
QLS+++AAF + RD
Sbjct: 315 QLSSMVAAFQAVRD 328
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 128/250 (51%), Gaps = 64/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD+L+SH+DI+STI+ I E L L+ + GT E + A
Sbjct: 17 VEKYRPQKLDDLISHKDILSTIQKFISEDKLPHLL-------FYGPPGTGETSTILACAK 69
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
++ VLELNASDDRGI +VR + FAST+T+ K +KL+ILDEAD MT DAQ
Sbjct: 70 QLYKEKEFTSMVLELNASDDRGIDVVRGPVLSFASTRTIFKRGFKLVILDEADHMTQDAQ 129
Query: 220 NALRRKL---------------------------------PVTPD--------------- 231
NALRR + P++PD
Sbjct: 130 NALRRVIEKYTENTRLCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRLEYVVQQESI 189
Query: 232 -----GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
G KAI+ LS GDMR+ LNILQS + A+ +V EDTVY G+P +++I NIL W
Sbjct: 190 DINPGGMKAIVTLSSGDMRRSLNILQSTSMAYG-KVTEDTVYTCTGHPLRSDIANILDWS 248
Query: 287 LNESMDLCYK 296
LN+ YK
Sbjct: 249 LNKDFTSAYK 258
>gi|391342410|ref|XP_003745513.1| PREDICTED: replication factor C subunit 5-like [Metaseiulus
occidentalis]
Length = 327
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 101/149 (67%), Positives = 123/149 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+RF+ ++ PHLLFYGPPGTGKT+TILA AR+LY +F++MVLELNASDDRGI
Sbjct: 27 DIISTIDRFVTQDRFPHLLFYGPPGTGKTSTILATARQLYEPKEFSSMVLELNASDDRGI 86
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
GIVR +I FAST+T+ +KLIILDEADAMT+DAQNALRR+IEK+ N RFCIICNYL
Sbjct: 87 GIVRGEILNFASTRTIFNKKFKLIILDEADAMTHDAQNALRRVIEKYADNARFCIICNYL 146
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
SKI P +QSRCTRFRFGPL S ++ R++
Sbjct: 147 SKIIPPLQSRCTRFRFGPLSVSQMVPRIE 175
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 116/199 (58%), Gaps = 37/199 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+ N RFCIICNYLSKI P +QSRCTRFRFGPL S ++ R++ VI+ E V +TP G
Sbjct: 130 IEKYADNARFCIICNYLSKIIPPLQSRCTRFRFGPLSVSQMVPRIEMVIKTEDVPITPAG 189
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD--EVNEDTIFTLLVSRVEKYRPSTLDELVSH- 117
K+AI+DL++GDMRK LNILQ++ A + +++E ++ V + S + ++++H
Sbjct: 190 KQAIVDLAEGDMRKSLNILQASYMAFCERGKIDETEVYQC----VGAPQKSVIADIMTHL 245
Query: 118 -----------------------QDIISTI-------EIPESMLVDLVLKMSDIEYRLAA 147
QDI+ + ++ + + ++ K+ +E RLAA
Sbjct: 246 MNDDITTAYRKILDIKTMKSLALQDIVHKVHQSIMEFDLKAKVKIFILSKLGQLEKRLAA 305
Query: 148 GTSEKIQLSALIAAFNSAR 166
G+SE IQL +L++ AR
Sbjct: 306 GSSENIQLGSLVSIMFQAR 324
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 124/253 (49%), Gaps = 67/253 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TLD+L++H+DIISTI D + + L G + S ++A
Sbjct: 11 VEKYRPKTLDDLIAHEDIISTI--------DRFVTQDRFPHLLFYGPPGTGKTSTILATA 62
Query: 163 NSARDKLE----VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
+ E VLELNASDDRGIGIVR +I FAST+T+ +KLIILDEADAMT+DA
Sbjct: 63 RQLYEPKEFSSMVLELNASDDRGIGIVRGEILNFASTRTIFNKKFKLIILDEADAMTHDA 122
Query: 219 QNALRRKLPVTPDGKKAII----------------------------------------- 237
QNALRR + D + I
Sbjct: 123 QNALRRVIEKYADNARFCIICNYLSKIIPPLQSRCTRFRFGPLSVSQMVPRIEMVIKTED 182
Query: 238 ------------DLSDGDMRKVLNILQSAATAHAD--EVNEDTVYNSVGYPTKTEITNIL 283
DL++GDMRK LNILQ++ A + +++E VY VG P K+ I +I+
Sbjct: 183 VPITPAGKQAIVDLAEGDMRKSLNILQASYMAFCERGKIDETEVYQCVGAPQKSVIADIM 242
Query: 284 RWLLNESMDLCYK 296
L+N+ + Y+
Sbjct: 243 THLMNDDITTAYR 255
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 435 IMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLK 494
IM+ L DDI+ Y KI +IK K LAL DI+ ++ + ++ + + ++ K
Sbjct: 241 IMTHLMNDDIT-----TAYRKILDIKTMKSLALQDIVHKVHQSIMEFDLKAKVKIFILSK 295
Query: 495 MSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
+ +E RLAAG+SE IQL +L++ AR
Sbjct: 296 LGQLEKRLAAGSSENIQLGSLVSIMFQAR 324
>gi|384248832|gb|EIE22315.1| DNA replication factor C complex subunit 5 [Coccomyxa
subellipsoidea C-169]
Length = 334
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 129/295 (43%), Positives = 173/295 (58%), Gaps = 64/295 (21%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I R + E+ PH+LFYGPPGTGKT+TILA AR++Y A +MVLELNASDDRGIGIVR+
Sbjct: 38 IKRLVKEDRFPHVLFYGPPGTGKTSTILAVARQMYG-ASLRSMVLELNASDDRGIGIVRE 96
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI-- 414
QI FASTKTM + +KL+ILDE DAMT DAQ ALRR+IEK+T N RFC+ICNY++KI
Sbjct: 97 QIVDFASTKTMFSNKFKLVILDECDAMTKDAQAALRRVIEKYTRNTRFCLICNYVNKIIP 156
Query: 415 -----------PPAIQSRC-TRFRF-----------GPLDSSLIMSRLDY---------- 441
PP S +R +F G LD+ + + D
Sbjct: 157 ALQSRCTRFRFPPLADSYVRSRLQFVIDSERVNMGDGGLDAVVTLGAGDMRRTLNILQAT 216
Query: 442 ---------------------DDI-----SFFN--IIIWYIKIQEIKIEKGLALTDILTE 473
DI + FN + + K+Q+++I KGLALTDI+ +
Sbjct: 217 HMSADVVSEEAVYQCTGNPLPKDIEAIVQALFNEDFVDVFAKVQDMQINKGLALTDIVQQ 276
Query: 474 ISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
+ V R+ +P S+ + LV ++D E+RLA GTSE++QL AL+ AF+ AR+ + A
Sbjct: 277 LHPWVFRVNMPASVRIKLVDALADTEHRLAFGTSERLQLGALVGAFSVAREGIVA 331
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 114/196 (58%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFC+ICNY++KI PA+QSRCTRFRF PL S + SRL +VI+ E+VN+ G
Sbjct: 135 IEKYTRNTRFCLICNYVNKIIPALQSRCTRFRFPPLADSYVRSRLQFVIDSERVNMGDGG 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEK---------YRPSTL 111
A++ L GDMR+ LNILQ A AD V+E+ ++ + + K + +
Sbjct: 195 LDAVVTLGAGDMRRTLNILQ-ATHMSADVVSEEAVYQCTGNPLPKDIEAIVQALFNEDFV 253
Query: 112 DELVSHQDI------------------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
D QD+ + + +P S+ + LV ++D E+RLA GTSE++
Sbjct: 254 DVFAKVQDMQINKGLALTDIVQQLHPWVFRVNMPASVRIKLVDALADTEHRLAFGTSERL 313
Query: 154 QLSALIAAFNSARDKL 169
QL AL+ AF+ AR+ +
Sbjct: 314 QLGALVGAFSVAREGI 329
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 116/242 (47%), Gaps = 63/242 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD++ +H++II TI+ + E + + + GT + + A+
Sbjct: 17 VEKYRPKTLDDVAAHKEIIDTIKRLVKED-------RFPHVLFYGPPGTGKTSTILAVAR 69
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
A + VLELNASDDRGIGIVR+QI FASTKTM + +KL+ILDE DAMT DAQ
Sbjct: 70 QMYGASLRSMVLELNASDDRGIGIVREQIVDFASTKTMFSNKFKLVILDECDAMTKDAQA 129
Query: 221 ALRR--------------------------------KLPVTPD----------------- 231
ALRR + P D
Sbjct: 130 ALRRVIEKYTRNTRFCLICNYVNKIIPALQSRCTRFRFPPLADSYVRSRLQFVIDSERVN 189
Query: 232 ----GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
G A++ L GDMR+ LNILQ A AD V+E+ VY G P +I I++ L
Sbjct: 190 MGDGGLDAVVTLGAGDMRRTLNILQ-ATHMSADVVSEEAVYQCTGNPLPKDIEAIVQALF 248
Query: 288 NE 289
NE
Sbjct: 249 NE 250
>gi|340377781|ref|XP_003387407.1| PREDICTED: replication factor C subunit 5-like [Amphimedon
queenslandica]
Length = 332
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 128/291 (43%), Positives = 169/291 (58%), Gaps = 63/291 (21%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I F+ E+ LPHLLFYGPPGTGKT+TILACA+ +++ A+ +MVLELNASDDRGI +VR
Sbjct: 29 IQHFLKEDRLPHLLFYGPPGTGKTSTILACAKTIFSPAEIKSMVLELNASDDRGIDVVRG 88
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII--------- 407
I FAST+++ +S +KLIILDEADAMT DAQNALRR+IE +T NVRFC+I
Sbjct: 89 PIQSFASTRSIFRSGFKLIILDEADAMTKDAQNALRRVIETYTDNVRFCLICNYLSKIIP 148
Query: 408 -----CNYLSKIPPAIQSRCTRFRF-----------GPLDSSLIMSRLD----------- 440
C P +++ R + +DS + +++ D
Sbjct: 149 ALQSRCTRFRFGPLSMEQMSVRLQHIIREENINITDSGMDSVVKLAQGDMRRSLNILQST 208
Query: 441 ---YDDIS---------------FFNIIIW---------YIKIQEIKIEKGLALTDILTE 473
YD + I+ W Y KI E+KIEKGLAL DI+TE
Sbjct: 209 SMAYDTVDQRTVYLCTGQPLPEDIKQIVEWMLGEDFMTAYQKIIELKIEKGLALHDIITE 268
Query: 474 ISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
I LVHR++ P + + L+ KMS+IEY ++ GTSE+IQL ALI AF + RD
Sbjct: 269 IHHLVHRIDFPAKVRLALLDKMSNIEYNVSTGTSERIQLGALIGAFQNVRD 319
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 124/208 (59%), Gaps = 32/208 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE +T NVRFC+ICNYLSKI PA+QSRCTRFRFGPL + RL ++I +E +N+T G
Sbjct: 127 IETYTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLSMEQMSVRLQHIIREENINITDSG 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------------------LV 100
+++ L+ GDMR+ LNILQS + A+ D V++ T++ +
Sbjct: 187 MDSVVKLAQGDMRRSLNILQSTSMAY-DTVDQRTVYLCTGQPLPEDIKQIVEWMLGEDFM 245
Query: 101 SRVEKYRPSTLDELVSHQDIIST-------IEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ +K +++ ++ DII+ I+ P + + L+ KMS+IEY ++ GTSE+I
Sbjct: 246 TAYQKIIELKIEKGLALHDIITEIHHLVHRIDFPAKVRLALLDKMSNIEYNVSTGTSERI 305
Query: 154 QLSALIAAFNSARDKLEVLELNASDDRG 181
QL ALI AF + RD + +AS +RG
Sbjct: 306 QLGALIGAFQNVRDIVS----DASRERG 329
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 123/251 (49%), Gaps = 66/251 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LD+L+SH++II+TI+ LK + + L G + S ++A
Sbjct: 8 VEKYRPKNLDDLISHKEIINTIQ--------HFLKEDRLPHLLFYGPPGTGKTSTILACA 59
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
F+ A K VLELNASDDRGI +VR I FAST+++ +S +KLIILDEADAMT DA
Sbjct: 60 KTIFSPAEIKSMVLELNASDDRGIDVVRGPIQSFASTRSIFRSGFKLIILDEADAMTKDA 119
Query: 219 QNALRRKLPVTPD----------------------------------------------- 231
QNALRR + D
Sbjct: 120 QNALRRVIETYTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLSMEQMSVRLQHIIREEN 179
Query: 232 ------GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
G +++ L+ GDMR+ LNILQS + A+ D V++ TVY G P +I I+ W
Sbjct: 180 INITDSGMDSVVKLAQGDMRRSLNILQSTSMAY-DTVDQRTVYLCTGQPLPEDIKQIVEW 238
Query: 286 LLNESMDLCYK 296
+L E Y+
Sbjct: 239 MLGEDFMTAYQ 249
>gi|328774020|gb|EGF84057.1| hypothetical protein BATDEDRAFT_84775 [Batrachochytrium
dendrobatidis JAM81]
Length = 358
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 102/150 (68%), Positives = 124/150 (82%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RFIDEN+LPH+LFYGPPGTGKT+TILACARKLY +F +M+LELNASDDRGI
Sbjct: 55 DIISTIVRFIDENKLPHMLFYGPPGTGKTSTILACARKLYGD-KFRSMILELNASDDRGI 113
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI FAST+ + S +KLIILDEADAMT AQNALRR+IE++T NVRFC+ICNY+
Sbjct: 114 DVVREQIKNFASTRKLFSSGFKLIILDEADAMTQAAQNALRRVIEQYTKNVRFCLICNYV 173
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
KI PA+QSRCTRFRF PL+ + I R+ +
Sbjct: 174 GKIIPALQSRCTRFRFAPLEEAQISDRITH 203
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 118/201 (58%), Gaps = 36/201 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFC+ICNY+ KI PA+QSRCTRFRF PL+ + I R+ ++I QE +N+T G
Sbjct: 157 IEQYTKNVRFCLICNYVGKIIPALQSRCTRFRFAPLEEAQISDRITHIINQEGINITQAG 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVS---- 116
++A++ LS GDMR+ LNILQ+ T + E E+TI+ S P+ +D++V+
Sbjct: 217 RQAVLKLSQGDMRRALNILQAVHTGYP-EATEETIYACTGSPC----PADIDQIVAWLFN 271
Query: 117 --------------HQ------DIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGT 149
H+ D++S +E+P+ + L+ K++DIEY + G
Sbjct: 272 MDYTTALKSVKLLKHEKGLALADLLSGLVVSLAGLELPKVSRIFLMEKLADIEYNIGVGC 331
Query: 150 SEKIQLSALIAAFNSARDKLE 170
SE IQL A++ AF + D E
Sbjct: 332 SEDIQLGAMVGAFRLSVDMAE 352
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 118/241 (48%), Gaps = 63/241 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS LDEL+SH+DIISTI I E+ K+ + + GT + + A
Sbjct: 39 VEKYRPSRLDELISHKDIISTIVRFIDEN-------KLPHMLFYGPPGTGKTSTILACAR 91
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ + +LELNASDDRGI +VR+QI FAST+ + S +KLIILDEADAMT AQN
Sbjct: 92 KLYGDKFRSMILELNASDDRGIDVVREQIKNFASTRKLFSSGFKLIILDEADAMTQAAQN 151
Query: 221 AL-----------------------------------------------------RRKLP 227
AL + +
Sbjct: 152 ALRRVIEQYTKNVRFCLICNYVGKIIPALQSRCTRFRFAPLEEAQISDRITHIINQEGIN 211
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+T G++A++ LS GDMR+ LNILQ+ T + E E+T+Y G P +I I+ WL
Sbjct: 212 ITQAGRQAVLKLSQGDMRRALNILQAVHTGYP-EATEETIYACTGSPCPADIDQIVAWLF 270
Query: 288 N 288
N
Sbjct: 271 N 271
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++ +K EKGLAL D+L+ + + + LE+P+ + L+ K++DIEY + G SE IQL A+
Sbjct: 281 VKLLKHEKGLALADLLSGLVVSLAGLELPKVSRIFLMEKLADIEYNIGVGCSEDIQLGAM 340
Query: 516 IAAFNSARDKLE 527
+ AF + D E
Sbjct: 341 VGAFRLSVDMAE 352
>gi|326429717|gb|EGD75287.1| replication factor C subunit 5 [Salpingoeca sp. ATCC 50818]
Length = 330
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/143 (69%), Positives = 122/143 (85%), Gaps = 1/143 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I RF+DE LPHLLFYGPPGTGKT+TI ACA++LY KA + +MVLELNASDDRGIG+VR+
Sbjct: 34 IQRFVDEKRLPHLLFYGPPGTGKTSTIKACAKQLYGKA-YKSMVLELNASDDRGIGVVRE 92
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FASTKT+ + +KLIILDEADAMTNDAQ ALRR+IEK+T + RFC+ICNY+SKI P
Sbjct: 93 QIKTFASTKTVFSAGFKLIILDEADAMTNDAQAALRRVIEKYTKHTRFCLICNYVSKISP 152
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
A+QSRCTRFRF PL + ++ ++
Sbjct: 153 ALQSRCTRFRFAPLATEHMIQQV 175
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 124/249 (49%), Gaps = 63/249 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +LD+LVSH++II TI+ + E L L+ + GT + + A
Sbjct: 13 VEKYRPDSLDQLVSHKEIIDTIQRFVDEKRLPHLL-------FYGPPGTGKTSTIKACAK 65
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
K VLELNASDDRGIG+VR+QI FASTKT+ + +KLIILDEADAMTNDAQ
Sbjct: 66 QLYGKAYKSMVLELNASDDRGIGVVREQIKTFASTKTVFSAGFKLIILDEADAMTNDAQA 125
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR +
Sbjct: 126 ALRRVIEKYTKHTRFCLICNYVSKISPALQSRCTRFRFAPLATEHMIQQVQRVIDAEHIE 185
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
TP G +A++ L+ GDMRK LNILQS A ++VN++ VY G P +I I+ +L
Sbjct: 186 TTPAGIEALVKLASGDMRKALNILQSTFMAF-NKVNDEGVYLCTGTPLPADIEAIVEVML 244
Query: 288 NESMDLCYK 296
NES ++
Sbjct: 245 NESFKTAFR 253
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 116/196 (59%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T + RFC+ICNY+SKI+PA+QSRCTRFRF PL + ++ ++ VI+ E + TP G
Sbjct: 131 IEKYTKHTRFCLICNYVSKISPALQSRCTRFRFAPLATEHMIQQVQRVIDAEHIETTPAG 190
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF----TLLVSRVEKYRPSTLDEL-- 114
+A++ L+ GDMRK LNILQS A ++VN++ ++ T L + +E L+E
Sbjct: 191 IEALVKLASGDMRKALNILQSTFMAF-NKVNDEGVYLCTGTPLPADIEAIVEVMLNESFK 249
Query: 115 --------------VSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
++ QDI I ++IP + + L+ +++ IE RLA G +E+
Sbjct: 250 TAFRKIMEIKTEQGLALQDILHDVHEFIHRLDIPTASRLLLLDRLAQIEERLAYGANERA 309
Query: 154 QLSALIAAFNSARDKL 169
QL+ L+ F R+++
Sbjct: 310 QLADLVGVFQVVRNQV 325
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
+ KI EIK E+GLAL DIL ++ +HRL+IP + + L+ +++ IE RLA G +E+ QL
Sbjct: 252 FRKIMEIKTEQGLALQDILHDVHEFIHRLDIPTASRLLLLDRLAQIEERLAYGANERAQL 311
Query: 513 SALIAAFNSARDKL 526
+ L+ F R+++
Sbjct: 312 ADLVGVFQVVRNQV 325
>gi|321265444|ref|XP_003197438.1| DNA replication factor [Cryptococcus gattii WM276]
gi|317463918|gb|ADV25651.1| DNA replication factor, putative [Cryptococcus gattii WM276]
Length = 373
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 125/294 (42%), Positives = 164/294 (55%), Gaps = 64/294 (21%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI+ LPHLLFYGPPGTGKT+T+LA AR+LY A + +LELNASDDRGI
Sbjct: 73 DITGTIEKFIEAGRLPHLLFYGPPGTGKTSTVLALARRLYGSA-YKKHILELNASDDRGI 131
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI FA TK + +KL+ILDEAD MT AQ+ALRR+IE+ T NVRFCI+CNY+
Sbjct: 132 DVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYV 191
Query: 412 SKIPPAIQSRCTRFRFGPL-------------------------DSSLIMSRLDY----- 441
+KI PAIQSRCTRFRF PL D+ L +SR D
Sbjct: 192 NKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTEDGRDALLKLSRGDMRRALN 251
Query: 442 ------------DDISFFNII---------------------IWYIKIQEIKIEKGLALT 468
D+ + +N Y I +KIEKGLAL
Sbjct: 252 VLQACHAAYDTVDETAVYNCTGNPHPRDIERVVQSMMADEFGTAYSLITSLKIEKGLALQ 311
Query: 469 DILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
D++ + +E+P+ + L+ + E+RL+ G SEK+QL+AL+ AF A
Sbjct: 312 DLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSEKMQLTALLGAFKVA 365
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 115/192 (59%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE+ T NVRFCI+CNY++KITPAIQSRCTRFRF PL I ++D V+++E VN+T DG
Sbjct: 175 IEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTEDG 234
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
+ A++ LS GDMR+ LN+LQ+ A+ D V+E ++
Sbjct: 235 RDALLKLSRGDMRRALNVLQACHAAY-DTVDETAVYNCTGNPHPRDIERVVQSMMADEFG 293
Query: 99 ----LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
L++ ++ + L +L++ + + T+E+P+ + L+ + E+RL+ G SEK+
Sbjct: 294 TAYSLITSLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSEKM 353
Query: 154 QLSALIAAFNSA 165
QL+AL+ AF A
Sbjct: 354 QLTALLGAFKVA 365
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 119/250 (47%), Gaps = 63/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +LD++VSH+DI TIE I L L+ + GT + + AL
Sbjct: 57 VEKYRPVSLDDVVSHKDITGTIEKFIEAGRLPHLL-------FYGPPGTGKTSTVLALAR 109
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ K +LELNASDDRGI +VR+QI FA TK + +KL+ILDEAD MT AQ+
Sbjct: 110 RLYGSAYKKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQS 169
Query: 221 ALRR-----------------------------------KLP------------------ 227
ALRR LP
Sbjct: 170 ALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVN 229
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+T DG+ A++ LS GDMR+ LN+LQ+ A+ D V+E VYN G P +I +++ ++
Sbjct: 230 LTEDGRDALLKLSRGDMRRALNVLQACHAAY-DTVDETAVYNCTGNPHPRDIERVVQSMM 288
Query: 288 NESMDLCYKI 297
+ Y +
Sbjct: 289 ADEFGTAYSL 298
>gi|324511848|gb|ADY44927.1| Replication factor C subunit 5 [Ascaris suum]
Length = 341
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 117/150 (78%), Gaps = 5/150 (3%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + + LPHLLFYGPPGTGKT+ IL AR ++T Q +MVLELNASDDRGIGIVRD
Sbjct: 36 LAKLVKKRRLPHLLFYGPPGTGKTSAILVAARMMFTPKQLASMVLELNASDDRGIGIVRD 95
Query: 357 QIFQFASTKTMH-----KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
QI FA TKT+H KS KLIILDEADAMT DAQNALRR+IEKFT NVRFCIICNYL
Sbjct: 96 QIMNFAQTKTLHVDENGKSHIKLIILDEADAMTKDAQNALRRVIEKFTENVRFCIICNYL 155
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRF PL I+ RL +
Sbjct: 156 SKIIPAVQSRCTRFRFAPLKEEQILPRLRH 185
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 91/198 (45%), Positives = 121/198 (61%), Gaps = 26/198 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT NVRFCIICNYLSKI PA+QSRCTRFRF PL I+ RL ++ + E + +T DG
Sbjct: 139 IEKFTENVRFCIICNYLSKIIPAVQSRCTRFRFAPLKEEQILPRLRHIAKSESLKLTEDG 198
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA--DE-------------VNEDTIFTLL------ 99
++A++ L+ GDMR+VLNILQS A A DE V ED + LL
Sbjct: 199 ERALMKLAGGDMRRVLNILQSTAMAFPKIDEESVYLCVGQPLPSVIEDIVRILLNDSFED 258
Query: 100 -VSRVEKYRP----STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
+++E R + D L S QD + ++IP + L+ +M+ IEYRLA G ++++Q
Sbjct: 259 AFTKIEGIRCLHAFALSDILASMQDAVYQLDIPSDVTCLLIAQMAQIEYRLARGCTDRMQ 318
Query: 155 LSALIAAFNSARDKLEVL 172
L+ALIAAF AR L L
Sbjct: 319 LAALIAAFVEARSALAKL 336
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 134/252 (53%), Gaps = 71/252 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP+TLD+LVSH++II+T L LV K + + L G + SA++ A
Sbjct: 15 VEKYRPATLDDLVSHEEIIAT-------LAKLV-KKRRLPHLLFYGPPGTGKTSAILVAA 66
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH-----KSSYKLIILDEADA 213
F + VLELNASDDRGIGIVRDQI FA TKT+H KS KLIILDEADA
Sbjct: 67 RMMFTPKQLASMVLELNASDDRGIGIVRDQIMNFAQTKTLHVDENGKSHIKLIILDEADA 126
Query: 214 MTNDAQNALRR------------------------------------------------- 224
MT DAQNALRR
Sbjct: 127 MTKDAQNALRRVIEKFTENVRFCIICNYLSKIIPAVQSRCTRFRFAPLKEEQILPRLRHI 186
Query: 225 ----KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEIT 280
L +T DG++A++ L+ GDMR+VLNILQS A A +++E++VY VG P + I
Sbjct: 187 AKSESLKLTEDGERALMKLAGGDMRRVLNILQSTAMAFP-KIDEESVYLCVGQPLPSVIE 245
Query: 281 NILRWLLNESMD 292
+I+R LLN+S +
Sbjct: 246 DIVRILLNDSFE 257
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 49/74 (66%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
+ KI+ I+ AL+DIL + V++L+IP + L+ +M+ IEYRLA G ++++QL
Sbjct: 260 FTKIEGIRCLHAFALSDILASMQDAVYQLDIPSDVTCLLIAQMAQIEYRLARGCTDRMQL 319
Query: 513 SALIAAFNSARDKL 526
+ALIAAF AR L
Sbjct: 320 AALIAAFVEARSAL 333
>gi|170589810|ref|XP_001899666.1| Putative activator 1 36 kDa subunit [Brugia malayi]
gi|158592792|gb|EDP31388.1| Putative activator 1 36 kDa subunit, putative [Brugia malayi]
Length = 347
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 106/148 (71%), Positives = 119/148 (80%), Gaps = 5/148 (3%)
Query: 299 RFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI 358
+ I+EN LPHLLFYGPPGTGKT+TILA AR LYT Q ++MVLELNASDDRGIGIVR+QI
Sbjct: 41 KLINENRLPHLLFYGPPGTGKTSTILAAARMLYTSKQLSSMVLELNASDDRGIGIVREQI 100
Query: 359 FQFASTKTMH-----KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
FA T T++ S KLIILDEADAMT DAQ+ALRR+IEKFT NVRFCIICNYLSK
Sbjct: 101 INFAQTSTLNVDKNQSSVPKLIILDEADAMTKDAQSALRRVIEKFTDNVRFCIICNYLSK 160
Query: 414 IPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
I PAIQSRCTR RF PL + I+ RL +
Sbjct: 161 IIPAIQSRCTRLRFAPLSNEQILPRLHH 188
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 123/198 (62%), Gaps = 26/198 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT NVRFCIICNYLSKI PAIQSRCTR RF PL + I+ RL ++++ E + VT DG
Sbjct: 142 IEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLSNEQILPRLHHIVQVETLTVTEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH--ADEVN-------------EDTIFTLL------ 99
+KA+++L++GDMR+V+NILQS A A DE N E + LL
Sbjct: 202 QKALLNLAEGDMRRVINILQSTAMAFKTVDEPNVYRCVGYPLPTDVEKIVKILLNDSIED 261
Query: 100 -VSRVEKYRP----STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
+++E+ R + D L S + I + +P +L L++ M+DIEY L+ G S+++Q
Sbjct: 262 AYTKIEEIRTERAFALSDILNSMHEFIFRLVVPPELLSRLLICMADIEYHLSQGCSDRLQ 321
Query: 155 LSALIAAFNSARDKLEVL 172
L ALI AF + R++L L
Sbjct: 322 LGALIGAFINTRNELAKL 339
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 133/255 (52%), Gaps = 71/255 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP++L ELVSHQ+I T L+ L+ + + + L G + S ++AA
Sbjct: 18 VEKYRPASLTELVSHQEITDT-------LMKLI-NENRLPHLLFYGPPGTGKTSTILAAA 69
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH-----KSSYKLIILDEADA 213
+ S + VLELNASDDRGIGIVR+QI FA T T++ S KLIILDEADA
Sbjct: 70 RMLYTSKQLSSMVLELNASDDRGIGIVREQIINFAQTSTLNVDKNQSSVPKLIILDEADA 129
Query: 214 MTNDAQNALRR------------------------------------------------- 224
MT DAQ+ALRR
Sbjct: 130 MTKDAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLSNEQILPRLHHI 189
Query: 225 ----KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEIT 280
L VT DG+KA+++L++GDMR+V+NILQS A A V+E VY VGYP T++
Sbjct: 190 VQVETLTVTEDGQKALLNLAEGDMRRVINILQSTAMAF-KTVDEPNVYRCVGYPLPTDVE 248
Query: 281 NILRWLLNESMDLCY 295
I++ LLN+S++ Y
Sbjct: 249 KIVKILLNDSIEDAY 263
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 12/149 (8%)
Query: 378 DEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMS 437
D A+ N A+ +RR+I N+ + + P + RC + P D I+
Sbjct: 200 DGQKALLNLAEGDMRRVI-----NILQSTAMAFKTVDEPNVY-RCVGYPL-PTDVEKIVK 252
Query: 438 RLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSD 497
L D I Y KI+EI+ E+ AL+DIL + + RL +P +L L++ M+D
Sbjct: 253 ILLNDSIED-----AYTKIEEIRTERAFALSDILNSMHEFIFRLVVPPELLSRLLICMAD 307
Query: 498 IEYRLAAGTSEKIQLSALIAAFNSARDKL 526
IEY L+ G S+++QL ALI AF + R++L
Sbjct: 308 IEYHLSQGCSDRLQLGALIGAFINTRNEL 336
>gi|256090013|ref|XP_002581023.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
Length = 245
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 101/139 (72%), Positives = 119/139 (85%), Gaps = 1/139 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RFID + LPHLLFYGPPGTGKT+TILA A++LY++ QF++MVLELNASDDRGI
Sbjct: 21 DISKTIKRFIDNDRLPHLLFYGPPGTGKTSTILAAAKRLYSR-QFSSMVLELNASDDRGI 79
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+Q+ FASTKT+ +KL+ILDEAD+MT DAQNALRRIIEKFT N RFC+ICNYL
Sbjct: 80 DVVREQVLSFASTKTLFAGKFKLVILDEADSMTKDAQNALRRIIEKFTENTRFCLICNYL 139
Query: 412 SKIPPAIQSRCTRFRFGPL 430
SKI PAIQSRCT+FRF PL
Sbjct: 140 SKIIPAIQSRCTKFRFAPL 158
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 122/247 (49%), Gaps = 59/247 (23%)
Query: 102 RVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
R+EKYRPS++++L+SH DI TI+ +D ++ + + GT + + A
Sbjct: 4 RIEKYRPSSIEDLISHDDISKTIK----RFID-NDRLPHLLFYGPPGTGKTSTILAAAKR 58
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
S + VLELNASDDRGI +VR+Q+ FASTKT+ +KL+ILDEAD+MT DAQNA
Sbjct: 59 LYSRQFSSMVLELNASDDRGIDVVREQVLSFASTKTLFAGKFKLVILDEADSMTKDAQNA 118
Query: 222 LRR------------------------------KLPVTP--------------------- 230
LRR K P
Sbjct: 119 LRRIIEKFTENTRFCLICNYLSKIIPAIQSRCTKFRFAPLAFNDVSTCLRKIASNEGVDL 178
Query: 231 --DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
DG KAI + GDMRK +N+LQS + + V+ +VY V YP+ TE+ ++L +LN
Sbjct: 179 TDDGIKAIYQFASGDMRKSINLLQSTYMS-SKTVDGPSVYACVAYPSPTEVRSLLDHVLN 237
Query: 289 ESMDLCY 295
E + Y
Sbjct: 238 EPISTAY 244
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 59/81 (72%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PAIQSRCT+FRF PL + + + L + E V++T DG
Sbjct: 123 IEKFTENTRFCLICNYLSKIIPAIQSRCTKFRFAPLAFNDVSTCLRKIASNEGVDLTDDG 182
Query: 61 KKAIIDLSDGDMRKVLNILQS 81
KAI + GDMRK +N+LQS
Sbjct: 183 IKAIYQFASGDMRKSINLLQS 203
>gi|159477557|ref|XP_001696875.1| DNA replication factor C complex subunit 5 [Chlamydomonas
reinhardtii]
gi|158274787|gb|EDP00567.1| DNA replication factor C complex subunit 5 [Chlamydomonas
reinhardtii]
Length = 356
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 125/295 (42%), Positives = 170/295 (57%), Gaps = 64/295 (21%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I R EN LPHLL YGPPGTGKT+TILA AR++Y + N M LELN+SD+RGIG+VR
Sbjct: 60 IKRLTVENRLPHLLLYGPPGTGKTSTILAVARQIYGNSLAN-MTLELNSSDERGIGVVRQ 118
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
+I FAST+++ + +KLIILDE DAMT DAQ ALRR+IEK+T N RFC+ICNY+SKI P
Sbjct: 119 EIQDFASTRSVFSNKFKLIILDECDAMTQDAQAALRRVIEKYTRNARFCLICNYVSKIIP 178
Query: 417 AIQSRCT-----------------------RFRFGP--LDSSLIMSRLD----------- 440
A+QSRCT + + GP LD+ + + D
Sbjct: 179 ALQSRCTKFRFAPLSPQFVRERLQYVADIEKMKLGPGGLDAVVQLGSGDMRRSLNILQSC 238
Query: 441 ---YDDIS---------------FFNIIIW---------YIKIQEIKIEKGLALTDILTE 473
+D + ++ W + I +++++KG+AL DI+ E
Sbjct: 239 HMAFDTVDQSAVYTCTGNPLPADIERVLTWLLNDRVAEVFANILKLQVDKGIALVDIVRE 298
Query: 474 ISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
+ V L IP V LV +++D+E+RLA TSEK+QL AL+AAF AR+ + A
Sbjct: 299 LHPFVMALSIPVPAKVALVERLADVEHRLAFSTSEKLQLGALVAAFVRARETIAA 353
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 114/196 (58%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFC+ICNY+SKI PA+QSRCT+FRF PL + RL YV + EK+ + P G
Sbjct: 157 IEKYTRNARFCLICNYVSKIIPALQSRCTKFRFAPLSPQFVRERLQYVADIEKMKLGPGG 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT----------------LLVSRVE 104
A++ L GDMR+ LNILQS A D V++ ++T LL RV
Sbjct: 217 LDAVVQLGSGDMRRSLNILQSCHMAF-DTVDQSAVYTCTGNPLPADIERVLTWLLNDRVA 275
Query: 105 KYRPSTL----DELVSHQDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ + L D+ ++ DI+ + IP V LV +++D+E+RLA TSEK+
Sbjct: 276 EVFANILKLQVDKGIALVDIVRELHPFVMALSIPVPAKVALVERLADVEHRLAFSTSEKL 335
Query: 154 QLSALIAAFNSARDKL 169
QL AL+AAF AR+ +
Sbjct: 336 QLGALVAAFVRARETI 351
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 114/242 (47%), Gaps = 63/242 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD++ +H++II TI+ E+ L L+L G + I A
Sbjct: 39 VEKYRPKKLDDVAAHKEIIDTIKRLTVENRLPHLLLYGPP-----GTGKTSTILAVARQI 93
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
NS + LELN+SD+RGIG+VR +I FAST+++ + +KLIILDE DAMT DAQ
Sbjct: 94 YGNSLANM--TLELNSSDERGIGVVRQEIQDFASTRSVFSNKFKLIILDECDAMTQDAQA 151
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR K+
Sbjct: 152 ALRRVIEKYTRNARFCLICNYVSKIIPALQSRCTKFRFAPLSPQFVRERLQYVADIEKMK 211
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+ P G A++ L GDMR+ LNILQS A D V++ VY G P +I +L WLL
Sbjct: 212 LGPGGLDAVVQLGSGDMRRSLNILQSCHMAF-DTVDQSAVYTCTGNPLPADIERVLTWLL 270
Query: 288 NE 289
N+
Sbjct: 271 ND 272
>gi|402593971|gb|EJW87898.1| replication factor C 5 [Wuchereria bancrofti]
Length = 347
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/148 (70%), Positives = 119/148 (80%), Gaps = 5/148 (3%)
Query: 299 RFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI 358
+ I+EN LPHLLFYGPPGTGKT+TILA AR LYT Q ++MVLELNASDDRGIGIVR+QI
Sbjct: 41 KLINENRLPHLLFYGPPGTGKTSTILAAARMLYTPKQLSSMVLELNASDDRGIGIVREQI 100
Query: 359 FQFASTKTMH-----KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
FA T T++ S KL+ILDEADAMT DAQ+ALRR+IEKFT NVRFCIICNYLSK
Sbjct: 101 INFAQTSTLNVDKNQSSVPKLVILDEADAMTKDAQSALRRVIEKFTDNVRFCIICNYLSK 160
Query: 414 IPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
I PAIQSRCTR RF PL + I+ RL +
Sbjct: 161 IIPAIQSRCTRLRFAPLSNEQILPRLHH 188
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/198 (45%), Positives = 122/198 (61%), Gaps = 26/198 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT NVRFCIICNYLSKI PAIQSRCTR RF PL + I+ RL +++ E + VT DG
Sbjct: 142 IEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLSNEQILPRLHHIVRVESLTVTEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH--ADEVN-------------EDTIFTLL------ 99
+KA+++L++GDMR+V+NILQS A A DE N E + LL
Sbjct: 202 QKALLNLAEGDMRRVINILQSTAMAFKTVDERNVYRCLGYPLPTDVEKIVKILLNDSMED 261
Query: 100 -VSRVEKYRP----STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
+R+E+ R + D L S D I + +P +L L++ M+DIEY L+ G S+++Q
Sbjct: 262 AYTRIEEIRNERAFALSDILNSMHDFIFRLVVPPELLSRLLICMADIEYHLSQGCSDRLQ 321
Query: 155 LSALIAAFNSARDKLEVL 172
L ALI AF + R++L L
Sbjct: 322 LGALIGAFINIRNELAKL 339
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 99/255 (38%), Positives = 133/255 (52%), Gaps = 71/255 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP++L ELVSHQ+II T L+ L+ + + + L G + S ++AA
Sbjct: 18 VEKYRPASLTELVSHQEIIDT-------LMKLI-NENRLPHLLFYGPPGTGKTSTILAAA 69
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH-----KSSYKLIILDEADA 213
+ + VLELNASDDRGIGIVR+QI FA T T++ S KL+ILDEADA
Sbjct: 70 RMLYTPKQLSSMVLELNASDDRGIGIVREQIINFAQTSTLNVDKNQSSVPKLVILDEADA 129
Query: 214 MTNDAQNALRR------------------------------------------------- 224
MT DAQ+ALRR
Sbjct: 130 MTKDAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLSNEQILPRLHHI 189
Query: 225 ----KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEIT 280
L VT DG+KA+++L++GDMR+V+NILQS A A V+E VY +GYP T++
Sbjct: 190 VRVESLTVTEDGQKALLNLAEGDMRRVINILQSTAMAF-KTVDERNVYRCLGYPLPTDVE 248
Query: 281 NILRWLLNESMDLCY 295
I++ LLN+SM+ Y
Sbjct: 249 KIVKILLNDSMEDAY 263
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 51/74 (68%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y +I+EI+ E+ AL+DIL + + RL +P +L L++ M+DIEY L+ G S+++QL
Sbjct: 263 YTRIEEIRNERAFALSDILNSMHDFIFRLVVPPELLSRLLICMADIEYHLSQGCSDRLQL 322
Query: 513 SALIAAFNSARDKL 526
ALI AF + R++L
Sbjct: 323 GALIGAFINIRNEL 336
>gi|58262374|ref|XP_568597.1| DNA replication factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230771|gb|AAW47080.1| DNA replication factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 373
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/294 (42%), Positives = 163/294 (55%), Gaps = 64/294 (21%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI+ LPHLL YGPPGTGKT+T+LA AR+LY A + +LELNASDDRGI
Sbjct: 73 DITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPA-YRKHILELNASDDRGI 131
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI FA TK + +KL+ILDEAD MT AQ+ALRR+IE+ T NVRFCI+CNY+
Sbjct: 132 DVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYV 191
Query: 412 SKIPPAIQSRCTRFRFGPL-------------------------DSSLIMSRLDY----- 441
+KI PAIQSRCTRFRF PL D+ L +SR D
Sbjct: 192 NKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDGRDAILKLSRGDMRRALN 251
Query: 442 ------------DDISFFNII---------------------IWYIKIQEIKIEKGLALT 468
D+ + +N Y I +KIEKGLAL
Sbjct: 252 VLQACHAAYDIVDETAVYNCTGNPHPRDIERVVQSMMADEFGTAYSLITSLKIEKGLALQ 311
Query: 469 DILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
D++ + +E+P+ + L+ + E+RL+ G SEK+QL+AL+ AF A
Sbjct: 312 DLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSEKMQLTALLGAFKVA 365
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 114/194 (58%), Gaps = 32/194 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE+ T NVRFCI+CNY++KITPAIQSRCTRFRF PL I ++D V+++E VN+T DG
Sbjct: 175 IEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDG 234
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH----------------------------ADEVNE 92
+ AI+ LS GDMR+ LN+LQ+ A+ ADE
Sbjct: 235 RDAILKLSRGDMRRALNVLQACHAAYDIVDETAVYNCTGNPHPRDIERVVQSMMADEFG- 293
Query: 93 DTIFTLLVS-RVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE 151
T ++L+ S ++EK + D + + + T+E+P+ + L+ + E+RL+ G SE
Sbjct: 294 -TAYSLITSLKIEKGL-ALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSE 351
Query: 152 KIQLSALIAAFNSA 165
K+QL+AL+ AF A
Sbjct: 352 KMQLTALLGAFKVA 365
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 119/250 (47%), Gaps = 63/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +LD++VSH+DI STIE I L L+L GT + + AL
Sbjct: 57 VEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGP-------PGTGKTSTVLALAR 109
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ +LELNASDDRGI +VR+QI FA TK + +KL+ILDEAD MT AQ+
Sbjct: 110 RLYGPAYRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQS 169
Query: 221 ALRR-----------------------------------KLP------------------ 227
ALRR LP
Sbjct: 170 ALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVN 229
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+T DG+ AI+ LS GDMR+ LN+LQ+ A+ D V+E VYN G P +I +++ ++
Sbjct: 230 LTDDGRDAILKLSRGDMRRALNVLQACHAAY-DIVDETAVYNCTGNPHPRDIERVVQSMM 288
Query: 288 NESMDLCYKI 297
+ Y +
Sbjct: 289 ADEFGTAYSL 298
>gi|134118754|ref|XP_771880.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254484|gb|EAL17233.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 373
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/294 (42%), Positives = 163/294 (55%), Gaps = 64/294 (21%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI+ LPHLL YGPPGTGKT+T+LA AR+LY A + +LELNASDDRGI
Sbjct: 73 DITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPA-YRKHILELNASDDRGI 131
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI FA TK + +KL+ILDEAD MT AQ+ALRR+IE+ T NVRFCI+CNY+
Sbjct: 132 DVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYV 191
Query: 412 SKIPPAIQSRCTRFRFGPL-------------------------DSSLIMSRLDY----- 441
+KI PAIQSRCTRFRF PL D+ L +SR D
Sbjct: 192 NKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDGRDALLKLSRGDMRRALN 251
Query: 442 ------------DDISFFNII---------------------IWYIKIQEIKIEKGLALT 468
D+ + +N Y I +KIEKGLAL
Sbjct: 252 VLQACHAAYDIVDETAVYNCTGNPHPRDIERVVQSMMADEFGTAYSLITSLKIEKGLALQ 311
Query: 469 DILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
D++ + +E+P+ + L+ + E+RL+ G SEK+QL+AL+ AF A
Sbjct: 312 DLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSEKMQLTALLGAFKVA 365
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 114/194 (58%), Gaps = 32/194 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE+ T NVRFCI+CNY++KITPAIQSRCTRFRF PL I ++D V+++E VN+T DG
Sbjct: 175 IEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDG 234
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH----------------------------ADEVNE 92
+ A++ LS GDMR+ LN+LQ+ A+ ADE
Sbjct: 235 RDALLKLSRGDMRRALNVLQACHAAYDIVDETAVYNCTGNPHPRDIERVVQSMMADEFG- 293
Query: 93 DTIFTLLVS-RVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE 151
T ++L+ S ++EK + D + + + T+E+P+ + L+ + E+RL+ G SE
Sbjct: 294 -TAYSLITSLKIEKGL-ALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSE 351
Query: 152 KIQLSALIAAFNSA 165
K+QL+AL+ AF A
Sbjct: 352 KMQLTALLGAFKVA 365
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 119/250 (47%), Gaps = 63/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +LD++VSH+DI STIE I L L+L GT + + AL
Sbjct: 57 VEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGP-------PGTGKTSTVLALAR 109
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ +LELNASDDRGI +VR+QI FA TK + +KL+ILDEAD MT AQ+
Sbjct: 110 RLYGPAYRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQS 169
Query: 221 ALRR-----------------------------------KLP------------------ 227
ALRR LP
Sbjct: 170 ALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVN 229
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+T DG+ A++ LS GDMR+ LN+LQ+ A+ D V+E VYN G P +I +++ ++
Sbjct: 230 LTDDGRDALLKLSRGDMRRALNVLQACHAAY-DIVDETAVYNCTGNPHPRDIERVVQSMM 288
Query: 288 NESMDLCYKI 297
+ Y +
Sbjct: 289 ADEFGTAYSL 298
>gi|405123808|gb|AFR98571.1| DNA replication factor [Cryptococcus neoformans var. grubii H99]
Length = 373
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 124/294 (42%), Positives = 163/294 (55%), Gaps = 64/294 (21%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI+ LPHLL YGPPGTGKT+T+LA AR+LY A + +LELNASDDRGI
Sbjct: 73 DITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPA-YRKHILELNASDDRGI 131
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI FA TK + +KL+ILDEAD MT AQ+ALRR+IE+ T NVRFCI+CNY+
Sbjct: 132 DVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYV 191
Query: 412 SKIPPAIQSRCTRFRFGPL-------------------------DSSLIMSRLDY----- 441
+KI PAIQSRCTRFRF PL D+ L +SR D
Sbjct: 192 NKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDGRDALLKLSRGDMRRALN 251
Query: 442 ------------DDISFFNII---------------------IWYIKIQEIKIEKGLALT 468
D+ + +N Y I +KIEKGLAL
Sbjct: 252 VLQACHAAYDIVDETAVYNCTGNPHPRDIERVVQSMMVDEFGTAYSLITTLKIEKGLALQ 311
Query: 469 DILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
D++ + +E+P+ + L+ + E+RL+ G SEK+QL+AL+ AF A
Sbjct: 312 DLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSEKMQLTALLGAFKVA 365
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 115/192 (59%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE+ T NVRFCI+CNY++KITPAIQSRCTRFRF PL I ++D V+++E VN+T DG
Sbjct: 175 IEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDG 234
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
+ A++ LS GDMR+ LN+LQ+ A+ D V+E ++
Sbjct: 235 RDALLKLSRGDMRRALNVLQACHAAY-DIVDETAVYNCTGNPHPRDIERVVQSMMVDEFG 293
Query: 99 ----LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
L++ ++ + L +L++ + + T+E+P+ + L+ + E+RL+ G SEK+
Sbjct: 294 TAYSLITTLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSEKM 353
Query: 154 QLSALIAAFNSA 165
QL+AL+ AF A
Sbjct: 354 QLTALLGAFKVA 365
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 119/250 (47%), Gaps = 63/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +LD++VSH+DI STIE I L L+L GT + + AL
Sbjct: 57 VEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGP-------PGTGKTSTVLALAR 109
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ +LELNASDDRGI +VR+QI FA TK + +KL+ILDEAD MT AQ+
Sbjct: 110 RLYGPAYRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQS 169
Query: 221 ALRR-----------------------------------KLP------------------ 227
ALRR LP
Sbjct: 170 ALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVN 229
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+T DG+ A++ LS GDMR+ LN+LQ+ A+ D V+E VYN G P +I +++ ++
Sbjct: 230 LTDDGRDALLKLSRGDMRRALNVLQACHAAY-DIVDETAVYNCTGNPHPRDIERVVQSMM 288
Query: 288 NESMDLCYKI 297
+ Y +
Sbjct: 289 VDEFGTAYSL 298
>gi|312069831|ref|XP_003137865.1| replication factor C subunit 3 [Loa loa]
gi|307766973|gb|EFO26207.1| replication factor C subunit 3 [Loa loa]
Length = 354
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 104/148 (70%), Positives = 118/148 (79%), Gaps = 5/148 (3%)
Query: 299 RFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI 358
+ I+EN LPHLLFYGPPGTGKT+TILA A+ +Y Q ++MVLELNASDDRGIGIVR+QI
Sbjct: 41 KLINENRLPHLLFYGPPGTGKTSTILAAAKMMYAPKQLSSMVLELNASDDRGIGIVREQI 100
Query: 359 FQFASTKTM-----HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
FA T T+ KS KLI+LDEADAMT DAQ+ALRR+IEKFT NVRFCIICNYLSK
Sbjct: 101 INFAQTSTLSMDKNQKSMPKLIVLDEADAMTKDAQSALRRVIEKFTDNVRFCIICNYLSK 160
Query: 414 IPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
I PAIQSRCTR RF PL + I+ RL Y
Sbjct: 161 IIPAIQSRCTRLRFAPLPNEQILPRLHY 188
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 121/199 (60%), Gaps = 28/199 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT NVRFCIICNYLSKI PAIQSRCTR RF PL + I+ RL Y+++ E + +T DG
Sbjct: 142 IEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLPNEQILPRLHYIVQAESLTITKDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL--------------------- 99
+ A+++L++GDMR+++NILQS A A V+E +++ +
Sbjct: 202 QNALLNLAEGDMRRIINILQSTAMAF-KTVDEWSVYQCVGYPLPNDVEKIVRILLNDSIE 260
Query: 100 --VSRVEKYRP----STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+++E+ R + D L S D I + IP +L L++ M+DIEY L+ G S+++
Sbjct: 261 DAYTKIEEIRSERAFALSDILNSMHDFIFRLVIPPELLSRLLVCMADIEYHLSQGCSDRL 320
Query: 154 QLSALIAAFNSARDKLEVL 172
QL ALI AF + R +L L
Sbjct: 321 QLGALIGAFINIRSELAKL 339
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 125/253 (49%), Gaps = 67/253 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +L E+VSH +I T+ I E+ L L+ Y L+A
Sbjct: 18 VEKYRPVSLTEVVSHGEITETLMKLINENRLPHLLF------YGPPGTGKTSTILAAAKM 71
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTM-----HKSSYKLIILDEADAMT 215
+ + VLELNASDDRGIGIVR+QI FA T T+ KS KLI+LDEADAMT
Sbjct: 72 MYAPKQLSSMVLELNASDDRGIGIVREQIINFAQTSTLSMDKNQKSMPKLIVLDEADAMT 131
Query: 216 NDAQNALRR--------------------------------------------------- 224
DAQ+ALRR
Sbjct: 132 KDAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLPNEQILPRLHYIVQ 191
Query: 225 --KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNI 282
L +T DG+ A+++L++GDMR+++NILQS A A V+E +VY VGYP ++ I
Sbjct: 192 AESLTITKDGQNALLNLAEGDMRRIINILQSTAMAF-KTVDEWSVYQCVGYPLPNDVEKI 250
Query: 283 LRWLLNESMDLCY 295
+R LLN+S++ Y
Sbjct: 251 VRILLNDSIEDAY 263
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 50/74 (67%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y KI+EI+ E+ AL+DIL + + RL IP +L L++ M+DIEY L+ G S+++QL
Sbjct: 263 YTKIEEIRSERAFALSDILNSMHDFIFRLVIPPELLSRLLVCMADIEYHLSQGCSDRLQL 322
Query: 513 SALIAAFNSARDKL 526
ALI AF + R +L
Sbjct: 323 GALIGAFINIRSEL 336
>gi|339242621|ref|XP_003377236.1| replication factor C subunit 5 [Trichinella spiralis]
gi|316973978|gb|EFV57519.1| replication factor C subunit 5 [Trichinella spiralis]
Length = 340
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 123/249 (49%), Positives = 166/249 (66%), Gaps = 15/249 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RFI+EN LPHLLFYGPPGTGKT+TILACA++LY K Q +MVLELNASDDRGI
Sbjct: 21 DILETIGRFINENRLPHLLFYGPPGTGKTSTILACAKQLYEKNQLKSMVLELNASDDRGI 80
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFT-TNVRFCIICNY 410
G+VR+QI FASTKT+ +K+IILDEADAMT DAQNALRR KFT ++ ++ +
Sbjct: 81 GVVREQILNFASTKTIFGGRFKMIILDEADAMTRDAQNALRRSKVKFTEEGLQHLVLLSG 140
Query: 411 --LSKIPPAIQSRCTRFRFGPLDSSL-IMSRLDYDDISFFNIIIW---------YIKIQE 458
+ + +QS F +++ + + DDI I+ W Y +I
Sbjct: 141 GDMRRALNILQSTAMAFDMVNMENVYACVGKPKPDDIK--AIVEWLFNKDFSETYKRITF 198
Query: 459 IKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 518
+K++KGLAL DIL E+ L V ++EIP + + L+ ++++IE L G S+K+QLSALIAA
Sbjct: 199 LKLKKGLALQDILEEVHLFVQKVEIPALVRIYLIDRLAEIEESLTRGASDKLQLSALIAA 258
Query: 519 FNSARDKLE 527
F+ ARD +E
Sbjct: 259 FHIARDIIE 267
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 124/201 (61%), Gaps = 10/201 (4%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
++ RVEKYRPS L+EL+SH+DI+ TI I E+ L L+ Y L+
Sbjct: 1 MLFRVEKYRPSKLEELISHKDILETIGRFINENRLPHLLF------YGPPGTGKTSTILA 54
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
+ + K VLELNASDDRGIG+VR+QI FASTKT+ +K+IILDEADAMT
Sbjct: 55 CAKQLYEKNQLKSMVLELNASDDRGIGVVREQILNFASTKTIFGGRFKMIILDEADAMTR 114
Query: 217 DAQNALRR-KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPT 275
DAQNALRR K+ T +G + ++ LS GDMR+ LNILQS A A D VN + VY VG P
Sbjct: 115 DAQNALRRSKVKFTEEGLQHLVLLSGGDMRRALNILQSTAMAF-DMVNMENVYACVGKPK 173
Query: 276 KTEITNILRWLLNESMDLCYK 296
+I I+ WL N+ YK
Sbjct: 174 PDDIKAIVEWLFNKDFSETYK 194
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 37/173 (21%)
Query: 30 RFRFGPLDSSLIMSR-LDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQSAATAHAD 88
RF+ LD + M+R + + KV T +G + ++ LS GDMR+ LNILQS A A D
Sbjct: 100 RFKMIILDEADAMTRDAQNALRRSKVKFTEEGLQHLVLLSGGDMRRALNILQSTAMAF-D 158
Query: 89 EVNEDTIFTLLVSRVEKYRPSTLDELVSH------------------------QDI---- 120
VN + ++ V K +P + +V QDI
Sbjct: 159 MVNMENVYAC----VGKPKPDDIKAIVEWLFNKDFSETYKRITFLKLKKGLALQDILEEV 214
Query: 121 ---ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLE 170
+ +EIP + + L+ ++++IE L G S+K+QLSALIAAF+ ARD +E
Sbjct: 215 HLFVQKVEIPALVRIYLIDRLAEIEESLTRGASDKLQLSALIAAFHIARDIIE 267
>gi|58262376|ref|XP_568598.1| DNA replication factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230772|gb|AAW47081.1| DNA replication factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 327
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 124/294 (42%), Positives = 163/294 (55%), Gaps = 64/294 (21%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI+ LPHLL YGPPGTGKT+T+LA AR+LY A + +LELNASDDRGI
Sbjct: 27 DITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPA-YRKHILELNASDDRGI 85
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI FA TK + +KL+ILDEAD MT AQ+ALRR+IE+ T NVRFCI+CNY+
Sbjct: 86 DVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYV 145
Query: 412 SKIPPAIQSRCTRFRFGPL-------------------------DSSLIMSRLDY----- 441
+KI PAIQSRCTRFRF PL D+ L +SR D
Sbjct: 146 NKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDGRDAILKLSRGDMRRALN 205
Query: 442 ------------DDISFFNII---------------------IWYIKIQEIKIEKGLALT 468
D+ + +N Y I +KIEKGLAL
Sbjct: 206 VLQACHAAYDIVDETAVYNCTGNPHPRDIERVVQSMMADEFGTAYSLITSLKIEKGLALQ 265
Query: 469 DILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
D++ + +E+P+ + L+ + E+RL+ G SEK+QL+AL+ AF A
Sbjct: 266 DLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSEKMQLTALLGAFKVA 319
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 115/192 (59%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE+ T NVRFCI+CNY++KITPAIQSRCTRFRF PL I ++D V+++E VN+T DG
Sbjct: 129 IEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDG 188
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
+ AI+ LS GDMR+ LN+LQ+ A+ D V+E ++
Sbjct: 189 RDAILKLSRGDMRRALNVLQACHAAY-DIVDETAVYNCTGNPHPRDIERVVQSMMADEFG 247
Query: 99 ----LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
L++ ++ + L +L++ + + T+E+P+ + L+ + E+RL+ G SEK+
Sbjct: 248 TAYSLITSLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSEKM 307
Query: 154 QLSALIAAFNSA 165
QL+AL+ AF A
Sbjct: 308 QLTALLGAFKVA 319
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 120/251 (47%), Gaps = 63/251 (25%)
Query: 102 RVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
RVEKYRP +LD++VSH+DI STIE I L L+L GT + + AL
Sbjct: 10 RVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGP-------PGTGKTSTVLALA 62
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
+ +LELNASDDRGI +VR+QI FA TK + +KL+ILDEAD MT AQ
Sbjct: 63 RRLYGPAYRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQ 122
Query: 220 NALRR-----------------------------------KLP----------------- 227
+ALRR LP
Sbjct: 123 SALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGV 182
Query: 228 -VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
+T DG+ AI+ LS GDMR+ LN+LQ+ A+ D V+E VYN G P +I +++ +
Sbjct: 183 NLTDDGRDAILKLSRGDMRRALNVLQACHAAY-DIVDETAVYNCTGNPHPRDIERVVQSM 241
Query: 287 LNESMDLCYKI 297
+ + Y +
Sbjct: 242 MADEFGTAYSL 252
>gi|134118756|ref|XP_771881.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254485|gb|EAL17234.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 327
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 124/294 (42%), Positives = 163/294 (55%), Gaps = 64/294 (21%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI+ LPHLL YGPPGTGKT+T+LA AR+LY A + +LELNASDDRGI
Sbjct: 27 DITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPA-YRKHILELNASDDRGI 85
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI FA TK + +KL+ILDEAD MT AQ+ALRR+IE+ T NVRFCI+CNY+
Sbjct: 86 DVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQSALRRVIEQHTKNVRFCILCNYV 145
Query: 412 SKIPPAIQSRCTRFRFGPL-------------------------DSSLIMSRLDY----- 441
+KI PAIQSRCTRFRF PL D+ L +SR D
Sbjct: 146 NKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDGRDALLKLSRGDMRRALN 205
Query: 442 ------------DDISFFNII---------------------IWYIKIQEIKIEKGLALT 468
D+ + +N Y I +KIEKGLAL
Sbjct: 206 VLQACHAAYDIVDETAVYNCTGNPHPRDIERVVQSMMADEFGTAYSLITSLKIEKGLALQ 265
Query: 469 DILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
D++ + +E+P+ + L+ + E+RL+ G SEK+QL+AL+ AF A
Sbjct: 266 DLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSEKMQLTALLGAFKVA 319
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 115/192 (59%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE+ T NVRFCI+CNY++KITPAIQSRCTRFRF PL I ++D V+++E VN+T DG
Sbjct: 129 IEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDG 188
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
+ A++ LS GDMR+ LN+LQ+ A+ D V+E ++
Sbjct: 189 RDALLKLSRGDMRRALNVLQACHAAY-DIVDETAVYNCTGNPHPRDIERVVQSMMADEFG 247
Query: 99 ----LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
L++ ++ + L +L++ + + T+E+P+ + L+ + E+RL+ G SEK+
Sbjct: 248 TAYSLITSLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLGGSEKM 307
Query: 154 QLSALIAAFNSA 165
QL+AL+ AF A
Sbjct: 308 QLTALLGAFKVA 319
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 120/251 (47%), Gaps = 63/251 (25%)
Query: 102 RVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
RVEKYRP +LD++VSH+DI STIE I L L+L GT + + AL
Sbjct: 10 RVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGP-------PGTGKTSTVLALA 62
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
+ +LELNASDDRGI +VR+QI FA TK + +KL+ILDEAD MT AQ
Sbjct: 63 RRLYGPAYRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQ 122
Query: 220 NALRR-----------------------------------KLP----------------- 227
+ALRR LP
Sbjct: 123 SALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGV 182
Query: 228 -VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
+T DG+ A++ LS GDMR+ LN+LQ+ A+ D V+E VYN G P +I +++ +
Sbjct: 183 NLTDDGRDALLKLSRGDMRRALNVLQACHAAY-DIVDETAVYNCTGNPHPRDIERVVQSM 241
Query: 287 LNESMDLCYKI 297
+ + Y +
Sbjct: 242 MADEFGTAYSL 252
>gi|268576128|ref|XP_002643044.1| Hypothetical protein CBG22959 [Caenorhabditis briggsae]
Length = 353
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 108/187 (57%), Positives = 135/187 (72%), Gaps = 20/187 (10%)
Query: 274 PTKTEITNILRWL-------LNESM---DLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P+ T ++N L W+ LNE + + + +FI+ LPHLLFYGPPGTGKTTT+
Sbjct: 3 PSTTVVSN-LPWVEKYRPSKLNELVAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTTTV 61
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------YKL 374
LA ARK+Y ++ ++MVLELNASD+RGI +VR+ I FA TK + + +KL
Sbjct: 62 LAAARKMYHPSKMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQAFASASDKDSVPFKL 121
Query: 375 IILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSL 434
+ILDEADAMT DAQNALRR+IEK+T NVRFCIICNYL+ I PAIQSRCTRFRF PLD SL
Sbjct: 122 VILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQSL 181
Query: 435 IMSRLDY 441
I+ RLD+
Sbjct: 182 IVPRLDF 188
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 129/201 (64%), Gaps = 28/201 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYL+ I PAIQSRCTRFRF PLD SLI+ RLD++++ E + +TPDG
Sbjct: 142 IEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQSLIVPRLDFIVKSEGLQMTPDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF---------------TLLVSR--- 102
++A++ +S GDMR V+N LQS A + + V+E T++ TLL+++
Sbjct: 202 REALLRVSKGDMRTVINTLQSTAMSF-EVVSESTVYQCIGQPTPAEMKKVVTLLLNQTAK 260
Query: 103 --VEKYRPSTLDELVSHQDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ K + S + + QD+I+ +++IP+S + +++ + ++E L+ G S +
Sbjct: 261 TCMNKIKKSLFENGYALQDVITHLHDLAFSMDIPDSAMSAIIVGLGEVEENLSTGCSNET 320
Query: 154 QLSALIAAFNSARDKLEVLEL 174
QL+A++AAF A+ + LE+
Sbjct: 321 QLAAVVAAFFEAKSSVNSLEI 341
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 75/133 (56%), Gaps = 17/133 (12%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS L+ELV+H+ ++ T+ I L L+ Y L+A
Sbjct: 14 VEKYRPSKLNELVAHEQVVKTLTKFIENRTLPHLLF------YGPPGTGKTTTVLAAARK 67
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------YKLIILDEA 211
++ ++ VLELNASD+RGI +VR+ I FA TK + + +KL+ILDEA
Sbjct: 68 MYHPSKMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQAFASASDKDSVPFKLVILDEA 127
Query: 212 DAMTNDAQNALRR 224
DAMT DAQNALRR
Sbjct: 128 DAMTKDAQNALRR 140
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 226 LPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
L +TPDG++A++ +S GDMR V+N LQS A + + V+E TVY +G PT E+ ++
Sbjct: 195 LQMTPDGREALLRVSKGDMRTVINTLQSTAMSF-EVVSESTVYQCIGQPTPAEMKKVVTL 253
Query: 286 LLNESMDLCY-KINRFIDEN 304
LLN++ C KI + + EN
Sbjct: 254 LLNQTAKTCMNKIKKSLFEN 273
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
KI++ E G AL D++T + L ++IP+S + +++ + ++E L+ G S + QL
Sbjct: 265 KIKKSLFENGYALQDVITHLHDLAFSMDIPDSAMSAIIVGLGEVEENLSTGCSNETQL 322
>gi|390346342|ref|XP_795505.3| PREDICTED: replication factor C subunit 5-like [Strongylocentrotus
purpuratus]
Length = 259
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 99/130 (76%), Positives = 113/130 (86%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I +FI ++ LPHLLFYGPPGTGKT+TILA A++LY +FN+MVLELNASDDRGIGIVR
Sbjct: 34 IQKFIKQDRLPHLLFYGPPGTGKTSTILAVAKQLYAPKEFNSMVLELNASDDRGIGIVRG 93
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
I FAST+T+ KS +KL+ILDEADAMTNDAQNALRR+IEKFT N RFC ICNYLSKI P
Sbjct: 94 SILNFASTRTIFKSGFKLVILDEADAMTNDAQNALRRVIEKFTENTRFCFICNYLSKIIP 153
Query: 417 AIQSRCTRFR 426
A+QSRCTRFR
Sbjct: 154 ALQSRCTRFR 163
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 103/262 (39%), Positives = 138/262 (52%), Gaps = 78/262 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP++LD+L+SH +II+TI+ +K + + L G + S ++A
Sbjct: 13 VEKYRPNSLDDLISHTEIINTIQ--------KFIKQDRLPHLLFYGPPGTGKTSTILAVA 64
Query: 162 --------FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADA 213
FNS VLELNASDDRGIGIVR I FAST+T+ KS +KL+ILDEADA
Sbjct: 65 KQLYAPKEFNSM-----VLELNASDDRGIGIVRGSILNFASTRTIFKSGFKLVILDEADA 119
Query: 214 MTNDAQNA--------------------LRRKLP-------------------------- 227
MTNDAQNA L + +P
Sbjct: 120 MTNDAQNALRRVIEKFTENTRFCFICNYLSKIIPALQSRCTRFRXXXXXXXXXXXXXXXX 179
Query: 228 -------VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEIT 280
+T DGKKA+I L+ GDMR+V+NILQS + AH ++V E+ VY G+P +T+I
Sbjct: 180 XIHTYVDMTEDGKKALITLAKGDMRRVINILQSTSMAH-EKVTEENVYLCTGHPLRTDIE 238
Query: 281 NILRWLLNESMDLCYKINRFID 302
NI+ W+LNE D NR ++
Sbjct: 239 NIVNWMLNE--DFTAAFNRILN 258
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC ICNYLSKI PA+QSRCTRFR V++T DG
Sbjct: 132 IEKFTENTRFCFICNYLSKIIPALQSRCTRFRXXXXXXXXXXXXXXXXXIHTYVDMTEDG 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF 96
KKA+I L+ GDMR+V+NILQS + AH ++V E+ ++
Sbjct: 192 KKALITLAKGDMRRVINILQSTSMAH-EKVTEENVY 226
>gi|308479944|ref|XP_003102180.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
gi|308262335|gb|EFP06288.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
Length = 365
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 99/154 (64%), Positives = 121/154 (78%), Gaps = 9/154 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +FI+ LPHLLFYGPPGTGKTTT+LA ARK+Y+ A+ ++MVLELNASD+RGI +VR+
Sbjct: 35 LTKFIENRTLPHLLFYGPPGTGKTTTVLAAARKMYSPARMSSMVLELNASDERGIDVVRN 94
Query: 357 QIFQFASTKTMHKSS---------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII 407
I FA TK + + +K++ILDEADAMT DAQNALRR+IEK+T NVRFCII
Sbjct: 95 TIVNFAQTKGLQSYATASSSDQVPFKMVILDEADAMTKDAQNALRRVIEKYTDNVRFCII 154
Query: 408 CNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
CNYL+ I PAIQSRCTRFRF PLD LI+ RLD+
Sbjct: 155 CNYLASIIPAIQSRCTRFRFAPLDQKLIVPRLDF 188
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 106/182 (58%), Gaps = 28/182 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYL+ I PAIQSRCTRFRF PLD LI+ RLD+++ E + +T DG
Sbjct: 142 IEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQKLIVPRLDFIVNSENIKMTSDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPS----------- 109
++A++ +S+GDMR V+N LQS A + D V+E T++ + K
Sbjct: 202 RQALLTVSNGDMRTVINTLQSTAMSF-DTVSESTVYQCIGQPTPKEMKQVVSILLNDSAK 260
Query: 110 ---------------TLDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
L ++++H D + T++IP+ + +V + ++E LA+G S +
Sbjct: 261 TCMNLIKTKLFDNGYALQDVITHLHDWVFTLDIPDEAMSAIVTGLGEVEQNLASGCSNET 320
Query: 154 QL 155
QL
Sbjct: 321 QL 322
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 122/259 (47%), Gaps = 71/259 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS LDELV+H+ ++ T+ I L L+ Y L+A
Sbjct: 14 VEKYRPSKLDELVAHEQVVKTLTKFIENRTLPHLLF------YGPPGTGKTTTVLAAARK 67
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------YKLIILDEA 211
++ AR VLELNASD+RGI +VR+ I FA TK + + +K++ILDEA
Sbjct: 68 MYSPARMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQSYATASSSDQVPFKMVILDEA 127
Query: 212 DAMTNDAQNALRR----------------------------------------------- 224
DAMT DAQNALRR
Sbjct: 128 DAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQKLIVPRLD 187
Query: 225 ------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTE 278
+ +T DG++A++ +S+GDMR V+N LQS A + D V+E TVY +G PT E
Sbjct: 188 FIVNSENIKMTSDGRQALLTVSNGDMRTVINTLQSTAMSF-DTVSESTVYQCIGQPTPKE 246
Query: 279 ITNILRWLLNESMDLCYKI 297
+ ++ LLN+S C +
Sbjct: 247 MKQVVSILLNDSAKTCMNL 265
>gi|341892966|gb|EGT48901.1| hypothetical protein CAEBREN_08790 [Caenorhabditis brenneri]
Length = 349
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 100/153 (65%), Positives = 119/153 (77%), Gaps = 8/153 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ RFI+ LPHLLFYGPPGTGKTTT+LA ARK+Y+ A+ +MVLELNASD+RGI +VR+
Sbjct: 35 LTRFIENRTLPHLLFYGPPGTGKTTTVLAAARKMYSPAKMASMVLELNASDERGIDVVRN 94
Query: 357 QIFQFASTKTMHKSS--------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
I FA TK + + +KL+ILDEADAMT DAQNALRR+IEK+T NVRFCIIC
Sbjct: 95 TIVTFAQTKGLQSFASASSEQLPFKLVILDEADAMTRDAQNALRRVIEKYTDNVRFCIIC 154
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
NYL+ I PAIQSRCTRFRF PLD LI+ RL +
Sbjct: 155 NYLASIIPAIQSRCTRFRFAPLDQQLIVPRLQH 187
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 113/182 (62%), Gaps = 28/182 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYL+ I PAIQSRCTRFRF PLD LI+ RL ++++ E V +TPDG
Sbjct: 141 IEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQQLIVPRLQHIVDSESVKMTPDG 200
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF---------------TLLVSRVEK 105
+KA++ +S GDMR V+N LQS A + D V+E T++ T L+++ K
Sbjct: 201 QKALLTVSKGDMRTVINTLQSTAMSF-DTVSESTVYQCIGQPTPNEMKEVVTCLLNKPSK 259
Query: 106 YRPST-----------LDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
T L ++++H DI+ T++IP+ + ++ + ++E LA+G S ++
Sbjct: 260 ECMETIKSRLFMNGYALQDVITHLHDIVFTMDIPDEAMTSIICGLGEVEENLASGCSNEL 319
Query: 154 QL 155
QL
Sbjct: 320 QL 321
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 117/255 (45%), Gaps = 70/255 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS DELV+H+ ++ T+ I L L+ Y L+A
Sbjct: 14 VEKYRPSKFDELVAHEQVVKTLTRFIENRTLPHLLF------YGPPGTGKTTTVLAAARK 67
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS--------YKLIILDEAD 212
++ A+ VLELNASD+RGI +VR+ I FA TK + + +KL+ILDEAD
Sbjct: 68 MYSPAKMASMVLELNASDERGIDVVRNTIVTFAQTKGLQSFASASSEQLPFKLVILDEAD 127
Query: 213 AMTNDAQ--------------------NALRRKLP------------------------- 227
AMT DAQ N L +P
Sbjct: 128 AMTRDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQQLIVPRLQH 187
Query: 228 --------VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEI 279
+TPDG+KA++ +S GDMR V+N LQS A + D V+E TVY +G PT E+
Sbjct: 188 IVDSESVKMTPDGQKALLTVSKGDMRTVINTLQSTAMSF-DTVSESTVYQCIGQPTPNEM 246
Query: 280 TNILRWLLNESMDLC 294
++ LLN+ C
Sbjct: 247 KEVVTCLLNKPSKEC 261
>gi|71986063|ref|NP_498750.2| Protein F44B9.8 [Caenorhabditis elegans]
gi|55584161|sp|P34429.3|RFC5_CAEEL RecName: Full=Probable replication factor C subunit 5; AltName:
Full=Activator 1 subunit 5
gi|351021183|emb|CCD63451.1| Protein F44B9.8 [Caenorhabditis elegans]
Length = 368
Score = 215 bits (547), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 99/154 (64%), Positives = 119/154 (77%), Gaps = 9/154 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +FI+ LPHLLFYGPPGTGKTTT+LA AR++Y+ + +MVLELNASD+RGI +VR+
Sbjct: 53 LTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSPTKMASMVLELNASDERGIDVVRN 112
Query: 357 QIFQFASTKTMHKSS---------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII 407
I FA TK + S +KL+ILDEADAMT DAQNALRR+IEK+T NVRFCII
Sbjct: 113 TIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCII 172
Query: 408 CNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
CNYL+ I PAIQSRCTRFRF PLD LI+ RL+Y
Sbjct: 173 CNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEY 206
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 109/182 (59%), Gaps = 28/182 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYL+ I PAIQSRCTRFRF PLD LI+ RL+Y++E E++ +TPDG
Sbjct: 160 IEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVETEQLKMTPDG 219
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYR----------PS- 109
K A++ +S GDMR V+N LQS A + D V+E+T++ + K PS
Sbjct: 220 KDALLIVSKGDMRTVINTLQSTAMSF-DTVSENTVYQCIGQPTPKEMKEVVKTLLNDPSK 278
Query: 110 ---------------TLDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
L ++++H D + T++IP+ + ++ + ++E L+ G S +
Sbjct: 279 KCMNTIQTKLFENGYALQDVITHLHDFVFTLDIPDEAMSAIITGLGEVEENLSTGCSNET 338
Query: 154 QL 155
QL
Sbjct: 339 QL 340
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 121/256 (47%), Gaps = 71/256 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS LDELV+H+ I+ T+ I L L+ Y L+A
Sbjct: 32 VEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLF------YGPPGTGKTTTVLAAARQ 85
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------YKLIILDEA 211
++ + VLELNASD+RGI +VR+ I FA TK + S +KL+ILDEA
Sbjct: 86 MYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEA 145
Query: 212 DAMTNDAQNALRR----------------------------------------------- 224
DAMT DAQNALRR
Sbjct: 146 DAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLE 205
Query: 225 ------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTE 278
+L +TPDGK A++ +S GDMR V+N LQS A + D V+E+TVY +G PT E
Sbjct: 206 YIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSF-DTVSENTVYQCIGQPTPKE 264
Query: 279 ITNILRWLLNESMDLC 294
+ +++ LLN+ C
Sbjct: 265 MKEVVKTLLNDPSKKC 280
>gi|430814133|emb|CCJ28598.1| unnamed protein product [Pneumocystis jirovecii]
Length = 350
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 133/291 (45%), Positives = 168/291 (57%), Gaps = 57/291 (19%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I FI +N +PHLLFYGPPGTGKT+TILACA+K+Y +F +LELNASD+RGI
Sbjct: 58 DIILTIEEFIKKNRIPHLLFYGPPGTGKTSTILACAKKIYG-PKFRNQLLELNASDERGI 116
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI FASTK + S +KL+ILDEADAMT AQNALRR+IEK+T NVRFCIICNY+
Sbjct: 117 DVVREQIKNFASTKQIFNSGFKLVILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYV 176
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIII------WYIKIQEIKIEKGL 465
+KI AIQSRCTRFRF PL S I +LDY I NI I +K+ + + KGL
Sbjct: 177 NKISLAIQSRCTRFRFQPLSSKEICLKLDY-VIKNENINISEKGKAELVKLADGDMRKGL 235
Query: 466 -------ALTDILTE--------------ISLLVHRLEIPESM----------------L 488
A D + E I L+V L E + L
Sbjct: 236 NILQACHAAYDFIDEDAVYNCVGNPHPEIIELIVKSLFNDEFLICLNTIIKVKTERGLAL 295
Query: 489 VDLVLKMSDI------------EYRLAAGTSEKIQLSALIAAFNSARDKLE 527
+D++ + ++ YRL+ G SEKIQLSA+I + D E
Sbjct: 296 LDIITGVYEVLDELELPINLQYRYRLSNGASEKIQLSAMIGTIKTGIDLAE 346
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 113/195 (57%), Gaps = 27/195 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNY++KI+ AIQSRCTRFRF PL S I +LDYVI+ E +N++ G
Sbjct: 160 IEKYTKNVRFCIICNYVNKISLAIQSRCTRFRFQPLSSKEICLKLDYVIKNENINISEKG 219
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTL--------- 111
K ++ L+DGDMRK LNILQ+ A+ D ++ED ++ V P +
Sbjct: 220 KAELVKLADGDMRKGLNILQACHAAY-DFIDEDAVYNC----VGNPHPEIIELIVKSLFN 274
Query: 112 DELVSHQDIISTIEIPESM-LVDLVLKMSDI------------EYRLAAGTSEKIQLSAL 158
DE + + I ++ + L+D++ + ++ YRL+ G SEKIQLSA+
Sbjct: 275 DEFLICLNTIIKVKTERGLALLDIITGVYEVLDELELPINLQYRYRLSNGASEKIQLSAM 334
Query: 159 IAAFNSARDKLEVLE 173
I + D E ++
Sbjct: 335 IGTIKTGIDLAEKMK 349
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 121/247 (48%), Gaps = 63/247 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L E+VSHQDII TIE I ++ + L+ + GT + + A
Sbjct: 42 VEKYRPEDLKEIVSHQDIILTIEEFIKKNRIPHLL-------FYGPPGTGKTSTILACAK 94
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ + ++LELNASD+RGI +VR+QI FASTK + S +KL+ILDEADAMT AQN
Sbjct: 95 KIYGPKFRNQLLELNASDERGIDVVREQIKNFASTKQIFNSGFKLVILDEADAMTLAAQN 154
Query: 221 ALRR------------------------------KLPVTPDGKKAI------------ID 238
ALRR + P K I I+
Sbjct: 155 ALRRVIEKYTKNVRFCIICNYVNKISLAIQSRCTRFRFQPLSSKEICLKLDYVIKNENIN 214
Query: 239 LSD-----------GDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+S+ GDMRK LNILQ+ A+ D ++ED VYN VG P I I++ L
Sbjct: 215 ISEKGKAELVKLADGDMRKGLNILQACHAAY-DFIDEDAVYNCVGNPHPEIIELIVKSLF 273
Query: 288 NESMDLC 294
N+ +C
Sbjct: 274 NDEFLIC 280
>gi|299116532|emb|CBN74720.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 382
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 129/334 (38%), Positives = 185/334 (55%), Gaps = 66/334 (19%)
Query: 253 SAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYKINRFIDENELPHLLFY 312
++A A A + +T ++ + K +++ + +E D+ + + I N+LPHLLFY
Sbjct: 45 TSAAAVARLAHRETARQTLPWVEKYRPSSLEELVAHE--DIVGILQKLIASNKLPHLLFY 102
Query: 313 GPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSY 372
GPPGTGKT+TILACA+KLY A F MVLELNASDDRGI +VR QI +FA TK + S
Sbjct: 103 GPPGTGKTSTILACAKKLY-GADFKMMVLELNASDDRGIDVVRGQIKEFAGTKRLFSSGV 161
Query: 373 KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA--------------- 417
KL+ILDEADAMTNDAQ ALRR+IEK+T + RFC+ICNY++KI PA
Sbjct: 162 KLVILDEADAMTNDAQFALRRVIEKYTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKP 221
Query: 418 --IQSRCTR-----------------FRFGPLDSSLIMSRLDYDDISFFNII-------- 450
IQ R R G D +++ L +++ +
Sbjct: 222 EQIQGRLQHVVDQEKVTITPDGVEAVMRLGQGDMRRVLNLLQSTHMAYQKVDERHAYLCA 281
Query: 451 -------IWYIK--------------IQEIKIEKGLALTDILTEISLLVHRLEIPESMLV 489
+ YI+ I ++ KG +L DI+ E++L V +E+P +++V
Sbjct: 282 AAPLKEDMEYIRNALLTASFKDAFDGILKLTTAKGYSLGDIVQELALKVMEIELPAAVMV 341
Query: 490 DLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
L+ +MS+ E RLA G SE++QL +L+ AF +AR
Sbjct: 342 HLLDEMSNTEERLAHGGSERLQLGSLVGAFATAR 375
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 118/192 (61%), Gaps = 26/192 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T + RFC+ICNY++KI PA+QSRCT+FRF PL I RL +V++QEKV +TPDG
Sbjct: 184 IEKYTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIQGRLQHVVDQEKVTITPDG 243
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH------------ADEVNEDTIF---TLLVS---- 101
+A++ L GDMR+VLN+LQS A+ A + ED + LL +
Sbjct: 244 VEAVMRLGQGDMRRVLNLLQSTHMAYQKVDERHAYLCAAAPLKEDMEYIRNALLTASFKD 303
Query: 102 ------RVEKYRPSTLDELVSHQDI-ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
++ + +L ++V + + IE+P +++V L+ +MS+ E RLA G SE++Q
Sbjct: 304 AFDGILKLTTAKGYSLGDIVQELALKVMEIELPAAVMVHLLDEMSNTEERLAHGGSERLQ 363
Query: 155 LSALIAAFNSAR 166
L +L+ AF +AR
Sbjct: 364 LGSLVGAFATAR 375
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 118/243 (48%), Gaps = 63/243 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS+L+ELV+H+DI+ +L L+ K+ + + GT + + A
Sbjct: 66 VEKYRPSSLEELVAHEDIVG-------ILQKLIASNKLPHLLFYGPPGTGKTSTILACAK 118
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
A K+ VLELNASDDRGI +VR QI +FA TK + S KL+ILDEADAMTNDAQ
Sbjct: 119 KLYGADFKMMVLELNASDDRGIDVVRGQIKEFAGTKRLFSSGVKLVILDEADAMTNDAQF 178
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR K+
Sbjct: 179 ALRRVIEKYTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIQGRLQHVVDQEKVT 238
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+TPDG +A++ L GDMR+VLN+LQS A+ +V+E Y P K ++ I LL
Sbjct: 239 ITPDGVEAVMRLGQGDMRRVLNLLQSTHMAY-QKVDERHAYLCAAAPLKEDMEYIRNALL 297
Query: 288 NES 290
S
Sbjct: 298 TAS 300
>gi|392590080|gb|EIW79410.1| DNA replication factor [Coniophora puteana RWD-64-598 SS2]
Length = 345
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/150 (64%), Positives = 121/150 (80%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RFI++N LPHLLFYGPPGTGKT+TILA AR++Y +++ +LELNASDDRGI
Sbjct: 48 DITTTIERFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG-SEYRKQILELNASDDRGI 106
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI QFA T+T+ SYKLIILDEAD MT AQ ALRR+IE++T NVRFCIICNY+
Sbjct: 107 DVVREQIKQFAETRTLFAKSYKLIILDEADMMTQQAQAALRRVIEQYTKNVRFCIICNYV 166
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+KI PAIQSRCTRFRF PL + + ++D+
Sbjct: 167 NKIAPAIQSRCTRFRFSPLPMAEVEKQIDH 196
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 116/192 (60%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY++KI PAIQSRCTRFRF PL + + ++D+V+E E VT DG
Sbjct: 150 IEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPMAEVEKQIDHVVEAEDCKVTKDG 209
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
K+A++ LS GDMR+ LN+LQ+ A+ D + E ++
Sbjct: 210 KEALLKLSKGDMRRALNVLQACHAAY-DSIGETEVYNCTGNPHPRDIESIVNSMLSDEFT 268
Query: 99 ----LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
++++++ R L +L+S + + T+E+ V L+ ++ IEYRL+ G SEKI
Sbjct: 269 TSYQMINQMKTERGLALQDLLSGAFEYVDTLELKPQARVYLLDYLATIEYRLSTGASEKI 328
Query: 154 QLSALIAAFNSA 165
QLSAL+ AF +A
Sbjct: 329 QLSALLGAFKNA 340
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/260 (36%), Positives = 130/260 (50%), Gaps = 64/260 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD++ SH+DI +TIE I ++ L L+ + GT + + A+
Sbjct: 32 VEKYRPVTLDDVKSHKDITTTIERFIEKNRLPHLL-------FYGPPGTGKTSTILAVAR 84
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ + ++LELNASDDRGI +VR+QI QFA T+T+ SYKLIILDEAD MT AQ
Sbjct: 85 RIYGSEYRKQILELNASDDRGIDVVREQIKQFAETRTLFAKSYKLIILDEADMMTQQAQA 144
Query: 221 ALRR-----------------------------------KLP------------------ 227
ALRR LP
Sbjct: 145 ALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPMAEVEKQIDHVVEAEDCK 204
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
VT DGK+A++ LS GDMR+ LN+LQ+ A+ D + E VYN G P +I +I+ +L
Sbjct: 205 VTKDGKEALLKLSKGDMRRALNVLQACHAAY-DSIGETEVYNCTGNPHPRDIESIVNSML 263
Query: 288 NESMDLCYK-INRFIDENEL 306
++ Y+ IN+ E L
Sbjct: 264 SDEFTTSYQMINQMKTERGL 283
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 45/70 (64%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I ++K E+GLAL D+L+ V LE+ V L+ ++ IEYRL+ G SEKIQL
Sbjct: 271 YQMINQMKTERGLALQDLLSGAFEYVDTLELKPQARVYLLDYLATIEYRLSTGASEKIQL 330
Query: 513 SALIAAFNSA 522
SAL+ AF +A
Sbjct: 331 SALLGAFKNA 340
>gi|443900350|dbj|GAC77676.1| replication factor C, subunit RFC5 [Pseudozyma antarctica T-34]
Length = 342
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/152 (67%), Positives = 122/152 (80%), Gaps = 3/152 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I FID+N LPHLLFYGPPGTGKT+TILA ARK+Y AQF VLELNASD+RGI
Sbjct: 42 DITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIY-GAQFRNSVLELNASDERGI 100
Query: 352 GIVRDQIFQFASTKTMH--KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+VR+QI FASTK++ K+ +KLI+LDEADAMT AQ ALRR+IE++T NVRFCIICN
Sbjct: 101 DVVREQIKSFASTKSVFGAKAGFKLIVLDEADAMTQAAQGALRRVIEQYTKNVRFCIICN 160
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
Y++KI PAIQSRCTRFRF PL+ + SRL +
Sbjct: 161 YVNKIIPAIQSRCTRFRFNPLEPDQVESRLQH 192
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 115/191 (60%), Gaps = 26/191 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY++KI PAIQSRCTRFRF PL+ + SRL +VIE E N+TP G
Sbjct: 146 IEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLEPDQVESRLQHVIESEHCNITPGG 205
Query: 61 KKAIIDLSDGDMRKVLNILQS--AATAHADEVN----------ED--------------T 94
K+A++ LS GDMR+ LN+LQ+ AA+ H DE ED T
Sbjct: 206 KEALLKLSRGDMRRALNVLQACHAASDHIDETAVYNCTGNPHPEDIEAVLKSMMQDEFTT 265
Query: 95 IFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
F +V+ + D + D++++I++P + L+ ++D E+RL+ G SEK+Q
Sbjct: 266 AFNTIVALKTAKGIALADMISGVYDLLASIKLPPKSRIYLLDHLADTEHRLSTGGSEKLQ 325
Query: 155 LSALIAAFNSA 165
L+AL+ A A
Sbjct: 326 LTALLGAVKIA 336
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 129/254 (50%), Gaps = 65/254 (25%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
L+ VEKYRP TLD+LVSH+DI STI+ I ++ L L+ + GT + +
Sbjct: 22 LLPWVEKYRPVTLDDLVSHKDITSTIQNFIDKNRLPHLL-------FYGPPGTGKTSTIL 74
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH--KSSYKLIILDEADAM 214
A+ A+ + VLELNASD+RGI +VR+QI FASTK++ K+ +KLI+LDEADAM
Sbjct: 75 AMARKIYGAQFRNSVLELNASDERGIDVVREQIKSFASTKSVFGAKAGFKLIVLDEADAM 134
Query: 215 TNDAQNALRRKL---------------------------------PVTPD---------- 231
T AQ ALRR + P+ PD
Sbjct: 135 TQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLEPDQVESRLQHVI 194
Query: 232 ----------GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITN 281
GK+A++ LS GDMR+ LN+LQ A A +D ++E VYN G P +I
Sbjct: 195 ESEHCNITPGGKEALLKLSRGDMRRALNVLQ-ACHAASDHIDETAVYNCTGNPHPEDIEA 253
Query: 282 ILRWLLNESMDLCY 295
+L+ ++ + +
Sbjct: 254 VLKSMMQDEFTTAF 267
>gi|403342743|gb|EJY70695.1| Replication factor C subunit 5 [Oxytricha trifallax]
Length = 324
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 164/290 (56%), Gaps = 63/290 (21%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ RFI+ ++PHLLF+GPPGTGKT+ ++A A+ LY KA++ M+LELNASDDRGI +VR+
Sbjct: 29 VRRFIETRKMPHLLFHGPPGTGKTSCVIAIAKHLYGKAEYKNMILELNASDDRGINVVRE 88
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI F ST+ + KL+ILDE D+MT+ AQ ALRRI+EK+T RFC ICNY+SKI P
Sbjct: 89 QIKSFCSTQQLMSKGIKLVILDECDSMTSSAQFALRRIVEKYTKTTRFCFICNYVSKIIP 148
Query: 417 AIQSRCTRFRFGPLDSSLIMS-----------RLDYD----------------------- 442
A+QSRCTRFRFGPL + I+ RLD D
Sbjct: 149 ALQSRCTRFRFGPLQTENILPKLHEIAELENLRLDQDAAESIVKLSGGDMRKVLNVLESC 208
Query: 443 -------------DI----SFFNIIIWYIKIQEIKIEKGLALTDILTEISLL-------- 477
D+ S ++I YI + ++ L + L ++ L
Sbjct: 209 SLAHKHITLQNVYDVTGRPSPYDIENIYISLNNDRLNDALNTINSLKQVKSLSVEDIISE 268
Query: 478 VHRLEIPESML----VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
+H+ + ML + L+ +M++IEYR+A G+SE++ L++L+ FN R
Sbjct: 269 IHKKVMQTKMLDEMKIFLISRMAEIEYRMAQGSSERVNLASLVGGFNEVR 318
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 117/193 (60%), Gaps = 28/193 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T RFC ICNY+SKI PA+QSRCTRFRFGPL + I+ +L + E E + + D
Sbjct: 127 VEKYTKTTRFCFICNYVSKIIPALQSRCTRFRFGPLQTENILPKLHEIAELENLRLDQDA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD-----------------------EVNEDTIFT 97
++I+ LS GDMRKVLN+L+S + AH +N D +
Sbjct: 187 AESIVKLSGGDMRKVLNVLESCSLAHKHITLQNVYDVTGRPSPYDIENIYISLNNDRLND 246
Query: 98 LL--VSRVEKYRPSTLDELVS--HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
L ++ +++ + ++++++S H+ ++ T ++ + M + L+ +M++IEYR+A G+SE++
Sbjct: 247 ALNTINSLKQVKSLSVEDIISEIHKKVMQT-KMLDEMKIFLISRMAEIEYRMAQGSSERV 305
Query: 154 QLSALIAAFNSAR 166
L++L+ FN R
Sbjct: 306 NLASLVGGFNEVR 318
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 116/247 (46%), Gaps = 66/247 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP+ L+ ++SH +II+T+ ++ KM + + GT + S +IA
Sbjct: 8 VEKYRPNDLESIISHDEIITTVR----RFIE-TRKMPHLLFHGPPGTG---KTSCVIAIA 59
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
+ A K +LELNASDDRGI +VR+QI F ST+ + KL+ILDE D+MT+ A
Sbjct: 60 KHLYGKAEYKNMILELNASDDRGINVVREQIKSFCSTQQLMSKGIKLVILDECDSMTSSA 119
Query: 219 QNALRR-----------------------------------------------------K 225
Q ALRR
Sbjct: 120 QFALRRIVEKYTKTTRFCFICNYVSKIIPALQSRCTRFRFGPLQTENILPKLHEIAELEN 179
Query: 226 LPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
L + D ++I+ LS GDMRKVLN+L+S + AH + VY+ G P+ +I NI
Sbjct: 180 LRLDQDAAESIVKLSGGDMRKVLNVLESCSLAH-KHITLQNVYDVTGRPSPYDIENIYIS 238
Query: 286 LLNESMD 292
L N+ ++
Sbjct: 239 LNNDRLN 245
>gi|313212534|emb|CBY36498.1| unnamed protein product [Oikopleura dioica]
gi|313219619|emb|CBY30541.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 93/145 (64%), Positives = 115/145 (79%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I +FID +LPHLLFYGPPGTGKT+TILA A++LY MVLELNASD RGI +VR+
Sbjct: 32 IKKFIDNEQLPHLLFYGPPGTGKTSTILAVAKELYGAKNLKKMVLELNASDARGINVVRN 91
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
+I FAS++++H +K+IILDE DAMT DAQ ALRR++EKFT NVRFC+ICNYL K+ P
Sbjct: 92 EILNFASSRSLHCKGFKVIILDECDAMTRDAQAALRRVMEKFTKNVRFCLICNYLGKLIP 151
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
AIQSRCTRFRF PL +M R+++
Sbjct: 152 AIQSRCTRFRFAPLSVEQMMPRINH 176
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 122/200 (61%), Gaps = 28/200 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EKFT NVRFC+ICNYL K+ PAIQSRCTRFRF PL +M R+++V+E+E +++ +G
Sbjct: 130 MEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLSVEQMMPRINHVVEEEGIDIDQNG 189
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------LVSRVEK 105
++ +++GDMR+ LNILQ++ A ++V +D ++ + L+++ K
Sbjct: 190 MDLLLKMAEGDMRRSLNILQASHLAF-NKVTDDIVYKVTGRPRRNDIRRMMEWLLNQDIK 248
Query: 106 YRPSTLDELVSHQDI------------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
Y +++EL+ I I ++P+ +++ ++DIEYRL G +EKI
Sbjct: 249 YCMDSIEELMLENGIALNDVLTDLYEEICEADLPDIPKAEILSALADIEYRLNIGATEKI 308
Query: 154 QLSALIAAFNSARDKLEVLE 173
QL+ ++AAF+ R+ + +E
Sbjct: 309 QLAVIVAAFSKVRNTVPRME 328
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 123/248 (49%), Gaps = 64/248 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+ LD+L+SH +IISTI+ I L L+ + GT + + A+
Sbjct: 11 VEKYRPNKLDDLISHTEIISTIKKFIDNEQLPHLL-------FYGPPGTGKTSTILAVAK 63
Query: 161 AFNSARD-KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
A++ K VLELNASD RGI +VR++I FAS++++H +K+IILDE DAMT DAQ
Sbjct: 64 ELYGAKNLKKMVLELNASDARGINVVRNEILNFASSRSLHCKGFKVIILDECDAMTRDAQ 123
Query: 220 --------------------NALRRKLP-------------------------------- 227
N L + +P
Sbjct: 124 AALRRVMEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLSVEQMMPRINHVVEEEGI 183
Query: 228 -VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
+ +G ++ +++GDMR+ LNILQ++ A ++V +D VY G P + +I ++ WL
Sbjct: 184 DIDQNGMDLLLKMAEGDMRRSLNILQASHLAF-NKVTDDIVYKVTGRPRRNDIRRMMEWL 242
Query: 287 LNESMDLC 294
LN+ + C
Sbjct: 243 LNQDIKYC 250
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 48/69 (69%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I+E+ +E G+AL D+LT++ + ++P+ +++ ++DIEYRL G +EKIQL+ +
Sbjct: 254 IEELMLENGIALNDVLTDLYEEICEADLPDIPKAEILSALADIEYRLNIGATEKIQLAVI 313
Query: 516 IAAFNSARD 524
+AAF+ R+
Sbjct: 314 VAAFSKVRN 322
>gi|389745640|gb|EIM86821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 358
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/150 (64%), Positives = 117/150 (78%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI++N LPHLLFYGPPGTGKT+TILA AR++Y A + LELNASDDRGI
Sbjct: 56 DITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG-AGYKKQTLELNASDDRGI 114
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI QFA T+T+ YKLIILDEAD MT AQ ALRR+IE++T NVRFCIICNY+
Sbjct: 115 DVVREQIKQFAETRTLFSKGYKLIILDEADMMTTAAQAALRRVIEQYTKNVRFCIICNYV 174
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+KI PAIQSRCTRFRF PL + R+D+
Sbjct: 175 NKIVPAIQSRCTRFRFSPLPMKEVEKRVDH 204
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 112/192 (58%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY++KI PAIQSRCTRFRF PL + R+D+V+ E V +T DG
Sbjct: 158 IEQYTKNVRFCIICNYVNKIVPAIQSRCTRFRFSPLPMKEVEKRVDHVVAAEGVKLTEDG 217
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
KKA++ LS GDMR+ LNILQ+ A+ D+ E ++
Sbjct: 218 KKALLKLSKGDMRRALNILQACHAAY-DQTGETEVYNCTGSPEPADIETVVNSMITDEFT 276
Query: 99 ----LVSRVEKYRPSTL-DELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
++S ++ R L D L+ + I I+ P + V L+ ++ E+RL+ G SEKI
Sbjct: 277 TSYHMISTLKTERGLALQDLLIGAYEYIEGIDFPPAARVYLLDHLATTEHRLSTGGSEKI 336
Query: 154 QLSALIAAFNSA 165
QL+AL+ AF +A
Sbjct: 337 QLTALLGAFKNA 348
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 123/250 (49%), Gaps = 63/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP++LD++VSH+DI STIE I ++ L L+ + GT + + A+
Sbjct: 40 VEKYRPNSLDDVVSHKDITSTIEKFIEKNRLPHLL-------FYGPPGTGKTSTILAVAR 92
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
A K + LELNASDDRGI +VR+QI QFA T+T+ YKLIILDEAD MT AQ
Sbjct: 93 RIYGAGYKKQTLELNASDDRGIDVVREQIKQFAETRTLFSKGYKLIILDEADMMTTAAQA 152
Query: 221 ALRR-----------------------------------KLP------------------ 227
ALRR LP
Sbjct: 153 ALRRVIEQYTKNVRFCIICNYVNKIVPAIQSRCTRFRFSPLPMKEVEKRVDHVVAAEGVK 212
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+T DGKKA++ LS GDMR+ LNILQ+ A+ D+ E VYN G P +I ++ ++
Sbjct: 213 LTEDGKKALLKLSKGDMRRALNILQACHAAY-DQTGETEVYNCTGSPEPADIETVVNSMI 271
Query: 288 NESMDLCYKI 297
+ Y +
Sbjct: 272 TDEFTTSYHM 281
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I +K E+GLAL D+L + ++ P + V L+ ++ E+RL+ G SEKIQL
Sbjct: 279 YHMISTLKTERGLALQDLLIGAYEYIEGIDFPPAARVYLLDHLATTEHRLSTGGSEKIQL 338
Query: 513 SALIAAFNSA 522
+AL+ AF +A
Sbjct: 339 TALLGAFKNA 348
>gi|301114403|ref|XP_002998971.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
gi|262111065|gb|EEY69117.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
Length = 353
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 95/145 (65%), Positives = 117/145 (80%), Gaps = 1/145 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+NR ID +LPHLLFYGPPGTGKT+ I+A AR+LY K + +MVLELNASDDRGI +VR+
Sbjct: 52 LNRLIDAQKLPHLLFYGPPGTGKTSMIIAAARRLYGK-NYGSMVLELNASDDRGIDVVRN 110
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI +FA TK + KLIILDEAD+MTNDAQ +LRR+IEK+T N RFC+ICNY+SKI P
Sbjct: 111 QIKEFAGTKKLFSQGVKLIILDEADSMTNDAQFSLRRVIEKYTKNARFCLICNYVSKIIP 170
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
A+QSRCTRFRF PL+ S + R+ +
Sbjct: 171 ALQSRCTRFRFAPLNESQVSGRVKH 195
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/242 (38%), Positives = 123/242 (50%), Gaps = 59/242 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRPS+LD+L++HQ+IIST+ + L+D K+ + + GT + + A
Sbjct: 31 VEKYRPSSLDDLIAHQEIISTL----NRLID-AQKLPHLLFYGPPGTGKTSMIIAAARRL 85
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
VLELNASDDRGI +VR+QI +FA TK + KLIILDEAD+MTNDAQ +L
Sbjct: 86 YGKNYGSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSQGVKLIILDEADSMTNDAQFSL 145
Query: 223 RR-----------------------------------------------------KLPVT 229
RR KL +T
Sbjct: 146 RRVIEKYTKNARFCLICNYVSKIIPALQSRCTRFRFAPLNESQVSGRVKHIAQLEKLNMT 205
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNE 289
DG KAI+ L GDMR++LNILQ+ + AH D V+E VY G P +I ++ +WL NE
Sbjct: 206 EDGFKAILRLGQGDMRRILNILQATSMAH-DIVDEANVYLCTGNPLPKDIESVTQWLFNE 264
Query: 290 SM 291
S
Sbjct: 265 SF 266
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 117/195 (60%), Gaps = 26/195 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFC+ICNY+SKI PA+QSRCTRFRF PL+ S + R+ ++ + EK+N+T DG
Sbjct: 149 IEKYTKNARFCLICNYVSKIIPALQSRCTRFRFAPLNESQVSGRVKHIAQLEKLNMTEDG 208
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH--ADEVNE--------------------DTIFTL 98
KAI+ L GDMR++LNILQ+ + AH DE N + FT
Sbjct: 209 FKAILRLGQGDMRRILNILQATSMAHDIVDEANVYLCTGNPLPKDIESVTQWLFNESFTA 268
Query: 99 LVSRVEKYRP----STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
V + + + +T D L + +E+P + L +++ +E+RL+ GT+E++Q
Sbjct: 269 AVRKCAEMQKLKGYATSDILQDVYRYTTELELPPRCRMYLYDELAKLEHRLSNGTTEELQ 328
Query: 155 LSALIAAFNSARDKL 169
L++L+A F AR+++
Sbjct: 329 LASLVAIFAIARNQM 343
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 47/72 (65%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
K E++ KG A +DIL ++ LE+P + L +++ +E+RL+ GT+E++QL++
Sbjct: 272 KCAEMQKLKGYATSDILQDVYRYTTELELPPRCRMYLYDELAKLEHRLSNGTTEELQLAS 331
Query: 515 LIAAFNSARDKL 526
L+A F AR+++
Sbjct: 332 LVAIFAIARNQM 343
>gi|225718872|gb|ACO15282.1| Replication factor C subunit 5 [Caligus clemensi]
Length = 345
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/152 (65%), Positives = 120/152 (78%), Gaps = 5/152 (3%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RF+ E+ +PH+LFYGPPGTGKT+ ILA +R+++ + N+ VLELNASDDRGI
Sbjct: 34 DIVGTIRRFVKESRMPHMLFYGPPGTGKTSAILAASREVFGETS-NSSVLELNASDDRGI 92
Query: 352 GIVRDQIFQFASTKTM----HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII 407
+ R +I FASTK + +S+KLIILDEADAMTNDAQNALRRIIEKFT NVRFC+I
Sbjct: 93 DVARGRILNFASTKRIAIQAGTASFKLIILDEADAMTNDAQNALRRIIEKFTDNVRFCLI 152
Query: 408 CNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
CNYLSKI PA+QSRCTRFRF PL S I+ RL
Sbjct: 153 CNYLSKIIPALQSRCTRFRFAPLASEQILPRL 184
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 123/195 (63%), Gaps = 29/195 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT NVRFC+ICNYLSKI PA+QSRCTRFRF PL S I+ RL V+++E + ++PDG
Sbjct: 140 IEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFAPLASEQILPRLQAVVKEESLEMSPDG 199
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF----------------TLLVSRVE 104
KA++ L+ GDMR++LNILQS + A +NE I+ +LL ++
Sbjct: 200 AKALLTLAKGDMRRILNILQSCSMAFP-VINESNIYACTGHPPPSDISLALESLLNDDLQ 258
Query: 105 K-YRP-----------STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
K Y+ S +D L ++ +EI + V L++K++D E+RL +GTSEK
Sbjct: 259 KAYQTIHVQLQTTKGLSLIDILTELHLLVHRLEISNRVKVKLLIKLADAEHRLLSGTSEK 318
Query: 153 IQLSALIAAFNSARD 167
IQL A++AAF +AR+
Sbjct: 319 IQLGAVVAAFRTARE 333
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 126/255 (49%), Gaps = 71/255 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP L +LVSH+DI+ TI +K S + + L G + SA++AA
Sbjct: 18 VEKYRPKDLSDLVSHEDIVGTIR--------RFVKESRMPHMLFYGPPGTGKTSAILAAS 69
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTM----HKSSYKLIILDEADAM 214
F + VLELNASDDRGI + R +I FASTK + +S+KLIILDEADAM
Sbjct: 70 REVFGETSNS-SVLELNASDDRGIDVARGRILNFASTKRIAIQAGTASFKLIILDEADAM 128
Query: 215 TNDAQNALRR-------------------------------------------------- 224
TNDAQNALRR
Sbjct: 129 TNDAQNALRRIIEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFAPLASEQILPRLQAVV 188
Query: 225 ---KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITN 281
L ++PDG KA++ L+ GDMR++LNILQS + A +NE +Y G+P ++I+
Sbjct: 189 KEESLEMSPDGAKALLTLAKGDMRRILNILQSCSMAFP-VINESNIYACTGHPPPSDISL 247
Query: 282 ILRWLLNESMDLCYK 296
L LLN+ + Y+
Sbjct: 248 ALESLLNDDLQKAYQ 262
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 65/96 (67%), Gaps = 4/96 (4%)
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488
P D SL + L DD+ I +Q ++ KGL+L DILTE+ LLVHRLEI +
Sbjct: 242 PSDISLALESLLNDDL---QKAYQTIHVQ-LQTTKGLSLIDILTELHLLVHRLEISNRVK 297
Query: 489 VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
V L++K++D E+RL +GTSEKIQL A++AAF +AR+
Sbjct: 298 VKLLIKLADAEHRLLSGTSEKIQLGAVVAAFRTARE 333
>gi|426196606|gb|EKV46534.1| hypothetical protein AGABI2DRAFT_71819 [Agaricus bisporus var.
bisporus H97]
Length = 344
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/149 (65%), Positives = 117/149 (78%), Gaps = 1/149 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RFI+ N LPHLLFYGPPGTGKT+TILA AR++Y + + +LELNASDDRGI
Sbjct: 45 DITSTIERFIERNRLPHLLFYGPPGTGKTSTILAVARRIYGNS-YKKQILELNASDDRGI 103
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI QFA T+T+ +KLIILDEAD MT AQ ALRR+IE+FT NVRFCIICNY+
Sbjct: 104 DVVREQIKQFAETRTLFSKGFKLIILDEADMMTQAAQAALRRVIEQFTKNVRFCIICNYV 163
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
+KI PAIQSRCTRFRF PL + + R+D
Sbjct: 164 NKITPAIQSRCTRFRFSPLPMTEVEKRVD 192
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 116/192 (60%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE+FT NVRFCIICNY++KITPAIQSRCTRFRF PL + + R+D V+E E V +T +G
Sbjct: 147 IEQFTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPMTEVEKRVDMVVEAENVPLTTEG 206
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
K A++ LS GDMR+ LN+LQ+ A+ D + E I+T
Sbjct: 207 KNALLKLSKGDMRRALNVLQACHAAY-DIIGESEIYTCTGNPHPSDIEIIVNSMLSDEFT 265
Query: 99 ----LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
++S+++ R L +L++ D I TIE+ + L+ ++ E+RL+ G SEKI
Sbjct: 266 ASYQMISKMKTERGLALQDLLTGAFDYIDTIELKPHARIYLLDHLASTEHRLSTGGSEKI 325
Query: 154 QLSALIAAFNSA 165
QL+AL+ AF +A
Sbjct: 326 QLTALLGAFKTA 337
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 122/250 (48%), Gaps = 63/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD++VSH+DI STIE I + L L+ + GT + + A+
Sbjct: 29 VEKYRPVTLDDVVSHKDITSTIERFIERNRLPHLL-------FYGPPGTGKTSTILAVAR 81
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
K ++LELNASDDRGI +VR+QI QFA T+T+ +KLIILDEAD MT AQ
Sbjct: 82 RIYGNSYKKQILELNASDDRGIDVVREQIKQFAETRTLFSKGFKLIILDEADMMTQAAQA 141
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR +P
Sbjct: 142 ALRRVIEQFTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPMTEVEKRVDMVVEAENVP 201
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+T +GK A++ LS GDMR+ LN+LQ+ A+ D + E +Y G P ++I I+ +L
Sbjct: 202 LTTEGKNALLKLSKGDMRRALNVLQACHAAY-DIIGESEIYTCTGNPHPSDIEIIVNSML 260
Query: 288 NESMDLCYKI 297
++ Y++
Sbjct: 261 SDEFTASYQM 270
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I ++K E+GLAL D+LT + +E+ + L+ ++ E+RL+ G SEKIQL
Sbjct: 268 YQMISKMKTERGLALQDLLTGAFDYIDTIELKPHARIYLLDHLASTEHRLSTGGSEKIQL 327
Query: 513 SALIAAFNSA 522
+AL+ AF +A
Sbjct: 328 TALLGAFKTA 337
>gi|409081372|gb|EKM81731.1| hypothetical protein AGABI1DRAFT_35783 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 344
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 97/149 (65%), Positives = 117/149 (78%), Gaps = 1/149 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RFI+ N LPHLLFYGPPGTGKT+TILA AR++Y + + +LELNASDDRGI
Sbjct: 45 DITSTIERFIERNRLPHLLFYGPPGTGKTSTILAVARRIYGTS-YKKQILELNASDDRGI 103
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI QFA T+T+ +KLIILDEAD MT AQ ALRR+IE+FT NVRFCIICNY+
Sbjct: 104 DVVREQIKQFAETRTLFSKGFKLIILDEADMMTQAAQAALRRVIEQFTKNVRFCIICNYV 163
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
+KI PAIQSRCTRFRF PL + + R+D
Sbjct: 164 NKITPAIQSRCTRFRFSPLPMTEVEKRVD 192
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 116/192 (60%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE+FT NVRFCIICNY++KITPAIQSRCTRFRF PL + + R+D V+E E V +T +G
Sbjct: 147 IEQFTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPMTEVEKRVDMVVEAENVPLTTEG 206
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
K A++ LS GDMR+ LN+LQ+ A+ D + E I+T
Sbjct: 207 KNALLKLSKGDMRRALNVLQACHAAY-DIIGESEIYTCTGNPHPSDIEIIVNSMLSDEFT 265
Query: 99 ----LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
++S+++ R L +L++ D I TIE+ + L+ ++ E+RL+ G SEKI
Sbjct: 266 ASYQMISKMKTERGLALQDLLTGAFDYIDTIELKPHARIYLLDHLASTEHRLSTGGSEKI 325
Query: 154 QLSALIAAFNSA 165
QL+AL+ AF +A
Sbjct: 326 QLTALLGAFKTA 337
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 131/276 (47%), Gaps = 63/276 (22%)
Query: 77 NILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDL 134
+ L + + EV+ T + VEKYRP TLD++VSH+DI STIE I + L L
Sbjct: 3 DTLPTPSNGKGKEVDTGTADAESLPWVEKYRPVTLDDVVSHKDITSTIERFIERNRLPHL 62
Query: 135 VLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFAS 194
+ + GT + + A+ K ++LELNASDDRGI +VR+QI QFA
Sbjct: 63 L-------FYGPPGTGKTSTILAVARRIYGTSYKKQILELNASDDRGIDVVREQIKQFAE 115
Query: 195 TKTMHKSSYKLIILDEADAMTNDAQNALRR------------------------------ 224
T+T+ +KLIILDEAD MT AQ ALRR
Sbjct: 116 TRTLFSKGFKLIILDEADMMTQAAQAALRRVIEQFTKNVRFCIICNYVNKITPAIQSRCT 175
Query: 225 -----------------------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADE 261
+P+T +GK A++ LS GDMR+ LN+LQ+ A+ D
Sbjct: 176 RFRFSPLPMTEVEKRVDMVVEAENVPLTTEGKNALLKLSKGDMRRALNVLQACHAAY-DI 234
Query: 262 VNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYKI 297
+ E +Y G P ++I I+ +L++ Y++
Sbjct: 235 IGESEIYTCTGNPHPSDIEIIVNSMLSDEFTASYQM 270
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I ++K E+GLAL D+LT + +E+ + L+ ++ E+RL+ G SEKIQL
Sbjct: 268 YQMISKMKTERGLALQDLLTGAFDYIDTIELKPHARIYLLDHLASTEHRLSTGGSEKIQL 327
Query: 513 SALIAAFNSA 522
+AL+ AF +A
Sbjct: 328 TALLGAFKTA 337
>gi|169849253|ref|XP_001831330.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
gi|116507598|gb|EAU90493.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
Length = 347
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 94/139 (67%), Positives = 114/139 (82%), Gaps = 1/139 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+RFI++N LPHLLFYGPPGTGKT+TILA AR++Y + + +LELNASDDRGI
Sbjct: 47 DITTTIDRFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG-SDYKKQILELNASDDRGI 105
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+Q+ QFA T+T+ YKLIILDEAD MT AQ ALRR+IE++T NVRFCIICNY+
Sbjct: 106 DVVREQVKQFAETRTLFSKGYKLIILDEADMMTQQAQAALRRVIEQYTKNVRFCIICNYV 165
Query: 412 SKIPPAIQSRCTRFRFGPL 430
+KI PAIQSRCTRFRF PL
Sbjct: 166 NKIAPAIQSRCTRFRFSPL 184
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 118/192 (61%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY++KI PAIQSRCTRFRF PL + + +++ V+E E V +TP+G
Sbjct: 149 IEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIAEVEKQVNRVVEAENVQLTPEG 208
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
K+A++ LS GDMR+ LN+LQ+ A+ D ++E ++
Sbjct: 209 KQALLKLSKGDMRRALNVLQACHAAY-DVISESEVYNCTGHPHPQDIEAIVNSMLSDEFT 267
Query: 99 ----LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
++S+++ R L +L++ + + TIEI + V ++ ++ E+RL+ G +EK+
Sbjct: 268 TSYQMISKLKTERGLALQDLIAGAYEYLETIEIKPNARVYVLDLLATTEHRLSTGGNEKM 327
Query: 154 QLSALIAAFNSA 165
QL+AL++AF A
Sbjct: 328 QLTALLSAFKGA 339
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 128/250 (51%), Gaps = 63/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +L+++VSHQDI +TI+ I ++ L L+ + GT + + A+
Sbjct: 31 VEKYRPVSLEDVVSHQDITTTIDRFIEKNRLPHLL-------FYGPPGTGKTSTILAVAR 83
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ K ++LELNASDDRGI +VR+Q+ QFA T+T+ YKLIILDEAD MT AQ
Sbjct: 84 RIYGSDYKKQILELNASDDRGIDVVREQVKQFAETRTLFSKGYKLIILDEADMMTQQAQA 143
Query: 221 ALRR-----------------------------------KLPV----------------- 228
ALRR LP+
Sbjct: 144 ALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIAEVEKQVNRVVEAENVQ 203
Query: 229 -TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
TP+GK+A++ LS GDMR+ LN+LQ+ A+ D ++E VYN G+P +I I+ +L
Sbjct: 204 LTPEGKQALLKLSKGDMRRALNVLQACHAAY-DVISESEVYNCTGHPHPQDIEAIVNSML 262
Query: 288 NESMDLCYKI 297
++ Y++
Sbjct: 263 SDEFTTSYQM 272
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 44/70 (62%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I ++K E+GLAL D++ + +EI + V ++ ++ E+RL+ G +EK+QL
Sbjct: 270 YQMISKLKTERGLALQDLIAGAYEYLETIEIKPNARVYVLDLLATTEHRLSTGGNEKMQL 329
Query: 513 SALIAAFNSA 522
+AL++AF A
Sbjct: 330 TALLSAFKGA 339
>gi|170087828|ref|XP_001875137.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650337|gb|EDR14578.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 334
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 95/148 (64%), Positives = 118/148 (79%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RFI++N LPHLLFYGPPGTGKT+TILA AR++Y AQ+ +LELNASD+RGI
Sbjct: 34 DITNTIERFIEKNRLPHLLFYGPPGTGKTSTILAVARRIY-GAQYRKQILELNASDERGI 92
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+Q+ QFA T+T+ +KLIILDEAD MT AQ ALRR+IE++T NVRFCIICNY+
Sbjct: 93 DVVREQVKQFAETRTLFAKGFKLIILDEADMMTQQAQAALRRVIEQYTKNVRFCIICNYV 152
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+KI PAIQSRCTRFRF PL + + R+
Sbjct: 153 NKITPAIQSRCTRFRFSPLPAIEVEKRV 180
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 115/192 (59%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY++KITPAIQSRCTRFRF PL + + R+ V+E E+V++T DG
Sbjct: 136 IEQYTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPAIEVEKRVKTVVEAEQVSLTDDG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
KKA++ LS GDMR+ LN+LQ+ A+ D + E I+
Sbjct: 196 KKALLKLSRGDMRRALNVLQACHAAY-DTIGETEIYNCTGNPHPSDIEAIVNSMLADEFT 254
Query: 99 ----LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ S+++ R L +L++ + + TI+I + L+ ++ E+RL+ G SEK+
Sbjct: 255 ASYQMTSKMKTERGLALQDLLTGAYEYLETIDIKPHARIYLLDHLATTEHRLSTGGSEKM 314
Query: 154 QLSALIAAFNSA 165
QL+AL+ AF A
Sbjct: 315 QLTALLGAFKIA 326
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 127/251 (50%), Gaps = 63/251 (25%)
Query: 102 RVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
RVEKYRP TLD++VSH+DI +TIE I ++ L L+ + GT + + A+
Sbjct: 17 RVEKYRPVTLDDVVSHKDITNTIERFIEKNRLPHLL-------FYGPPGTGKTSTILAVA 69
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
A+ + ++LELNASD+RGI +VR+Q+ QFA T+T+ +KLIILDEAD MT AQ
Sbjct: 70 RRIYGAQYRKQILELNASDERGIDVVREQVKQFAETRTLFAKGFKLIILDEADMMTQQAQ 129
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR ++
Sbjct: 130 AALRRVIEQYTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPAIEVEKRVKTVVEAEQV 189
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
+T DGKKA++ LS GDMR+ LN+LQ+ A+ D + E +YN G P ++I I+ +
Sbjct: 190 SLTDDGKKALLKLSRGDMRRALNVLQACHAAY-DTIGETEIYNCTGNPHPSDIEAIVNSM 248
Query: 287 LNESMDLCYKI 297
L + Y++
Sbjct: 249 LADEFTASYQM 259
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y ++K E+GLAL D+LT + ++I + L+ ++ E+RL+ G SEK+QL
Sbjct: 257 YQMTSKMKTERGLALQDLLTGAYEYLETIDIKPHARIYLLDHLATTEHRLSTGGSEKMQL 316
Query: 513 SALIAAFNSA 522
+AL+ AF A
Sbjct: 317 TALLGAFKIA 326
>gi|313225768|emb|CBY07242.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 92/145 (63%), Positives = 115/145 (79%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I +FI+ +LPHLLFYGPPGTGKT+TILA A++LY MVLELNASD RGI +VR+
Sbjct: 32 IKKFIENEQLPHLLFYGPPGTGKTSTILAVAKELYGAKNLKKMVLELNASDARGIDVVRN 91
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
+I FAS++++H +K+IILDE DAMT DAQ ALRR++EKFT NVRFC+ICNYL K+ P
Sbjct: 92 EILNFASSRSLHCKGFKVIILDECDAMTRDAQAALRRVMEKFTKNVRFCLICNYLGKLIP 151
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
AIQSRCTRFRF PL +M R+++
Sbjct: 152 AIQSRCTRFRFAPLSVEQMMPRINH 176
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 122/200 (61%), Gaps = 28/200 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EKFT NVRFC+ICNYL K+ PAIQSRCTRFRF PL +M R+++V+E+E +++ +G
Sbjct: 130 MEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLSVEQMMPRINHVVEEEGIDIDQNG 189
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------LVSRVEK 105
++ +++GDMR+ LNILQ++ A ++V +D ++ + L+++ K
Sbjct: 190 MDLLLKMAEGDMRRSLNILQASHLAF-NKVTDDIVYKVTGRPRRNDIRRMMEWLLNQDIK 248
Query: 106 YRPSTLDELVSHQDI------------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
Y +++EL+ I I ++P+ +++ ++DIEYRL G +EKI
Sbjct: 249 YCMDSIEELMLENGIALNDVLTDLYEEICEADLPDIPKAEILSALADIEYRLNIGATEKI 308
Query: 154 QLSALIAAFNSARDKLEVLE 173
QL+ ++AAF+ R+ + +E
Sbjct: 309 QLAVIVAAFSKVRNTVPRME 328
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 123/248 (49%), Gaps = 64/248 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+ LD+L+SH +IISTI+ I L L+ + GT + + A+
Sbjct: 11 VEKYRPNKLDDLISHTEIISTIKKFIENEQLPHLL-------FYGPPGTGKTSTILAVAK 63
Query: 161 AFNSARD-KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
A++ K VLELNASD RGI +VR++I FAS++++H +K+IILDE DAMT DAQ
Sbjct: 64 ELYGAKNLKKMVLELNASDARGIDVVRNEILNFASSRSLHCKGFKVIILDECDAMTRDAQ 123
Query: 220 --------------------NALRRKLP-------------------------------- 227
N L + +P
Sbjct: 124 AALRRVMEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLSVEQMMPRINHVVEEEGI 183
Query: 228 -VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
+ +G ++ +++GDMR+ LNILQ++ A ++V +D VY G P + +I ++ WL
Sbjct: 184 DIDQNGMDLLLKMAEGDMRRSLNILQASHLAF-NKVTDDIVYKVTGRPRRNDIRRMMEWL 242
Query: 287 LNESMDLC 294
LN+ + C
Sbjct: 243 LNQDIKYC 250
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 48/69 (69%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I+E+ +E G+AL D+LT++ + ++P+ +++ ++DIEYRL G +EKIQL+ +
Sbjct: 254 IEELMLENGIALNDVLTDLYEEICEADLPDIPKAEILSALADIEYRLNIGATEKIQLAVI 313
Query: 516 IAAFNSARD 524
+AAF+ R+
Sbjct: 314 VAAFSKVRN 322
>gi|328859221|gb|EGG08331.1| hypothetical protein MELLADRAFT_47841 [Melampsora larici-populina
98AG31]
Length = 346
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/141 (68%), Positives = 114/141 (80%), Gaps = 1/141 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLY-TKAQFNAMVLELNASDDRG 350
D+ Y I +FI N LPHLLFYGPPGTGKT+TILA AR+LY T F VLELNASDDRG
Sbjct: 44 DIIYTIQKFITSNRLPHLLFYGPPGTGKTSTILAIARQLYQTPMSFKNNVLELNASDDRG 103
Query: 351 IGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
I +VR+QI FAS + + S +KLIILDEAD MT AQ+ALRR+IE++T NVRFCIICNY
Sbjct: 104 IEVVREQIKNFASARMVFSSGFKLIILDEADQMTTTAQSALRRVIEQYTKNVRFCIICNY 163
Query: 411 LSKIPPAIQSRCTRFRFGPLD 431
+++I PAIQSRCT+FRFGPLD
Sbjct: 164 VNRISPAIQSRCTKFRFGPLD 184
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 119/192 (61%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY+++I+PAIQSRCT+FRFGPLD + R+ VI+ E + VT DG
Sbjct: 148 IEQYTKNVRFCIICNYVNRISPAIQSRCTKFRFGPLDLPEVDRRVGQVIDSENLVVTEDG 207
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVS----RVEKYRPSTLDE--- 113
+KA+++L GDMR+VLN++Q+ + + +V+ED+++ S ++E S ++E
Sbjct: 208 RKALLNLCKGDMRRVLNVMQACHSGYG-KVDEDSVYECTGSPHPKQIEDIVKSMMNEEFQ 266
Query: 114 -------------LVSHQDII-------STIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
++ QDII T+E+ + L+ ++S IEYRL+ G SEK+
Sbjct: 267 TSFKRIQDIKVNFGLALQDIILGIYEFLKTVELGNLAQIYLLDQLSQIEYRLSTGGSEKL 326
Query: 154 QLSALIAAFNSA 165
QLS L+ F A
Sbjct: 327 QLSGLLGCFKIA 338
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 126/249 (50%), Gaps = 61/249 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPSTL+E+VSH+DII TI+ I + L L+ + + + QL
Sbjct: 28 VEKYRPSTLEEVVSHKDIIYTIQKFITSNRLPHLLFYGPPGTGKTSTILAIARQLYQTPM 87
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+F K VLELNASDDRGI +VR+QI FAS + + S +KLIILDEAD MT AQ+
Sbjct: 88 SF-----KNNVLELNASDDRGIEVVREQIKNFASARMVFSSGFKLIILDEADQMTTTAQS 142
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR L
Sbjct: 143 ALRRVIEQYTKNVRFCIICNYVNRISPAIQSRCTKFRFGPLDLPEVDRRVGQVIDSENLV 202
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
VT DG+KA+++L GDMR+VLN++Q+ + + +V+ED+VY G P +I +I++ ++
Sbjct: 203 VTEDGRKALLNLCKGDMRRVLNVMQACHSGYG-KVDEDSVYECTGSPHPKQIEDIVKSMM 261
Query: 288 NESMDLCYK 296
NE +K
Sbjct: 262 NEEFQTSFK 270
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
+ +IQ+IK+ GLAL DI+ I + +E+ + L+ ++S IEYRL+ G SEK+QL
Sbjct: 269 FKRIQDIKVNFGLALQDIILGIYEFLKTVELGNLAQIYLLDQLSQIEYRLSTGGSEKLQL 328
Query: 513 SALIAAFNSA 522
S L+ F A
Sbjct: 329 SGLLGCFKIA 338
>gi|343425514|emb|CBQ69049.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 342
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 100/152 (65%), Positives = 120/152 (78%), Gaps = 3/152 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I FID+N LPHLLFYGPPGTGKT+TILA ARK++ QF VLELNASDDRGI
Sbjct: 42 DITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFG-PQFRNSVLELNASDDRGI 100
Query: 352 GIVRDQIFQFASTKTM--HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+VR+QI FASTK++ K +KLI+LDEADAMT AQ ALRR+IE++T NVRFCIICN
Sbjct: 101 EVVREQIKSFASTKSVFSSKGGFKLIVLDEADAMTQAAQGALRRVIEQYTKNVRFCIICN 160
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
Y++KI PAIQSRCTRFRF PL+ + RL++
Sbjct: 161 YVNKIIPAIQSRCTRFRFNPLELDQVEDRLNH 192
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 116/192 (60%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY++KI PAIQSRCTRFRF PL+ + RL++VI+ E +T DG
Sbjct: 146 IEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLELDQVEDRLNHVIDTEGCKITQDG 205
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
K+A++ LS GDMR+ LN+LQ A A +D ++E ++
Sbjct: 206 KEALLKLSRGDMRRALNVLQ-ACHAASDNIDETAVYNCTGNPHPQDVEAVLKSMMEDEFT 264
Query: 99 ----LVSRVEKYRPSTLDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
VS ++ + L +++S D+++TI++P + L+ ++D E+RL+ G SEKI
Sbjct: 265 TAFRTVSELKTAKGIALADMISGVYDLLATIKLPAKSRIYLLDHLADTEHRLSTGGSEKI 324
Query: 154 QLSALIAAFNSA 165
QL+AL+ A A
Sbjct: 325 QLTALLGAVKVA 336
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 136/276 (49%), Gaps = 66/276 (23%)
Query: 79 LQSAATAHADEVNEDTIFTL-LVSRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLV 135
+ S AD+ + T L L+ VEKYRP+TLD+LVSH+DI STI+ I ++ L L+
Sbjct: 1 MSSKGKGKADDASASTDQQLDLLPWVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLL 60
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFAST 195
+ GT + + A+ + + VLELNASDDRGI +VR+QI FAST
Sbjct: 61 -------FYGPPGTGKTSTILAMARKIFGPQFRNSVLELNASDDRGIEVVREQIKSFAST 113
Query: 196 KTM--HKSSYKLIILDEADAMTNDAQ--------------------NALRRKLP------ 227
K++ K +KLI+LDEADAMT AQ N + + +P
Sbjct: 114 KSVFSSKGGFKLIVLDEADAMTQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRC 173
Query: 228 ---------------------------VTPDGKKAIIDLSDGDMRKVLNILQSAATAHAD 260
+T DGK+A++ LS GDMR+ LN+LQ A A +D
Sbjct: 174 TRFRFNPLELDQVEDRLNHVIDTEGCKITQDGKEALLKLSRGDMRRALNVLQ-ACHAASD 232
Query: 261 EVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYK 296
++E VYN G P ++ +L+ ++ + ++
Sbjct: 233 NIDETAVYNCTGNPHPQDVEAVLKSMMEDEFTTAFR 268
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 44/67 (65%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+ E+K KG+AL D+++ + L+ +++P + L+ ++D E+RL+ G SEKIQL+AL
Sbjct: 270 VSELKTAKGIALADMISGVYDLLATIKLPAKSRIYLLDHLADTEHRLSTGGSEKIQLTAL 329
Query: 516 IAAFNSA 522
+ A A
Sbjct: 330 LGAVKVA 336
>gi|300122519|emb|CBK23089.2| unnamed protein product [Blastocystis hominis]
Length = 341
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 99/150 (66%), Positives = 118/150 (78%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RFI+ N LPHLLFYGPPGTGKTTTI+A A+ LY + ++MVLELNASDDRGI
Sbjct: 40 DIVATIKRFIEGNRLPHLLFYGPPGTGKTTTIMAVAKMLYGSSH-SSMVLELNASDDRGI 98
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI FA TK + + KL+ILDEAD MTN AQ ALRRIIEK++ N RFC+ICNY+
Sbjct: 99 NVVREQIKVFAGTKKLFHTGVKLVILDEADNMTNAAQFALRRIIEKYSQNTRFCLICNYV 158
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
S+I PA+QSRCTRFRF PL+ LI SRL Y
Sbjct: 159 SEIIPAVQSRCTRFRFQPLNPQLIRSRLLY 188
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 109/192 (56%), Gaps = 26/192 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK++ N RFC+ICNY+S+I PA+QSRCTRFRF PL+ LI SRL Y++ QE V DG
Sbjct: 142 IEKYSQNTRFCLICNYVSEIIPAVQSRCTRFRFQPLNPQLIRSRLLYILRQENVEFDDDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNE--------------DTIFTLLVSRVEKY 106
A++ LS GDMR+V+N+LQ+ A A E + + + L+++
Sbjct: 202 VAALLALSRGDMRRVINVLQATAMAFGKVTAEHVYRCAGMPSPADMELVLSSLMAKSYGD 261
Query: 107 RPSTLDEL-----VSHQDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
TL+EL + DI++ + P ++ L +++D+E RL AGT E+IQ
Sbjct: 262 ALKTLEELQRKKMFAMSDILTELVGKLQEVSFPPAVDAFLYRELADLEVRLNAGTQEEIQ 321
Query: 155 LSALIAAFNSAR 166
L +L+ F R
Sbjct: 322 LRSLVGIFTKVR 333
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 116/243 (47%), Gaps = 63/243 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP++LD +VS DI++TI+ I + L L+ + GT + + A+
Sbjct: 24 VEKYRPTSLDNIVSQDDIVATIKRFIEGNRLPHLL-------FYGPPGTGKTTTIMAVAK 76
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ VLELNASDDRGI +VR+QI FA TK + + KL+ILDEAD MTN AQ
Sbjct: 77 MLYGSSHSSMVLELNASDDRGINVVREQIKVFAGTKKLFHTGVKLVILDEADNMTNAAQF 136
Query: 221 ALRRKL---------------------------------PVTP----------------- 230
ALRR + P+ P
Sbjct: 137 ALRRIIEKYSQNTRFCLICNYVSEIIPAVQSRCTRFRFQPLNPQLIRSRLLYILRQENVE 196
Query: 231 ---DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
DG A++ LS GDMR+V+N+LQ+ A A +V + VY G P+ ++ +L L+
Sbjct: 197 FDDDGVAALLALSRGDMRRVINVLQATAMAFG-KVTAEHVYRCAGMPSPADMELVLSSLM 255
Query: 288 NES 290
+S
Sbjct: 256 AKS 258
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 43/68 (63%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++E++ +K A++DILTE+ + + P ++ L +++D+E RL AGT E+IQL +L
Sbjct: 266 LEELQRKKMFAMSDILTELVGKLQEVSFPPAVDAFLYRELADLEVRLNAGTQEEIQLRSL 325
Query: 516 IAAFNSAR 523
+ F R
Sbjct: 326 VGIFTKVR 333
>gi|71021079|ref|XP_760770.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
gi|46100247|gb|EAK85480.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
Length = 341
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 100/152 (65%), Positives = 120/152 (78%), Gaps = 3/152 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I FID+N LPHLLFYGPPGTGKT+TILA ARK++ QF VLELNASDDRGI
Sbjct: 41 DITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIF-GPQFRNSVLELNASDDRGI 99
Query: 352 GIVRDQIFQFASTKTM--HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+VR+QI FASTK++ K +KLI+LDEADAMT AQ ALRR+IE++T NVRFCIICN
Sbjct: 100 DVVREQIKSFASTKSVFSSKGGFKLIVLDEADAMTQAAQGALRRVIEQYTKNVRFCIICN 159
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
Y++KI PAIQSRCTRFRF PL+ + RL++
Sbjct: 160 YVNKIIPAIQSRCTRFRFNPLELDQVEDRLNH 191
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 119/191 (62%), Gaps = 26/191 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY++KI PAIQSRCTRFRF PL+ + RL++VIE E N+T DG
Sbjct: 145 IEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLELDQVEDRLNHVIESEGCNITQDG 204
Query: 61 KKAIIDLSDGDMRKVLNILQS--AATAHADEV-----------------------NEDTI 95
K+A++ LS GDMR+ LN+LQ+ AA+ H DE +E T
Sbjct: 205 KEALLKLSRGDMRRALNVLQACHAASDHIDETAVYNCTGNPHPHDIEAILKSMMEDEFTT 264
Query: 96 FTLLVSRVEKYRPSTLDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
VS+++ + L ++++ D+++TI++P + L+ ++D E+RL+ G SEKIQ
Sbjct: 265 AFWTVSQLKTAKGIALADIITGFYDLLTTIKLPAKSRIYLLDHLADTEHRLSTGGSEKIQ 324
Query: 155 LSALIAAFNSA 165
L+AL+ A A
Sbjct: 325 LTALLGAVKVA 335
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 127/254 (50%), Gaps = 65/254 (25%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
L+ VEKYRP+TLD+LVSH+DI STI+ I ++ L L+ + GT + +
Sbjct: 21 LLPWVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLL-------FYGPPGTGKTSTIL 73
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTM--HKSSYKLIILDEADAM 214
A+ + + VLELNASDDRGI +VR+QI FASTK++ K +KLI+LDEADAM
Sbjct: 74 AMARKIFGPQFRNSVLELNASDDRGIDVVREQIKSFASTKSVFSSKGGFKLIVLDEADAM 133
Query: 215 TNDAQ--------------------NALRRKLP--------------------------- 227
T AQ N + + +P
Sbjct: 134 TQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLELDQVEDRLNHVI 193
Query: 228 ------VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITN 281
+T DGK+A++ LS GDMR+ LN+LQ A A +D ++E VYN G P +I
Sbjct: 194 ESEGCNITQDGKEALLKLSRGDMRRALNVLQ-ACHAASDHIDETAVYNCTGNPHPHDIEA 252
Query: 282 ILRWLLNESMDLCY 295
IL+ ++ + +
Sbjct: 253 ILKSMMEDEFTTAF 266
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488
P D I+ + D+ F W + ++K KG+AL DI+T L+ +++P
Sbjct: 247 PHDIEAILKSMMEDE---FTTAFW--TVSQLKTAKGIALADIITGFYDLLTTIKLPAKSR 301
Query: 489 VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
+ L+ ++D E+RL+ G SEKIQL+AL+ A A
Sbjct: 302 IYLLDHLADTEHRLSTGGSEKIQLTALLGAVKVA 335
>gi|449018110|dbj|BAM81512.1| replication factor C subunit 5 [Cyanidioschyzon merolae strain 10D]
Length = 366
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 97/147 (65%), Positives = 120/147 (81%), Gaps = 3/147 (2%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R I E LPHLLFYGPPGTGKTT ILACAR+++ AQF MVLELNASDDRGI +VR+
Sbjct: 41 LRRLIAERTLPHLLFYGPPGTGKTTAILACAREMFG-AQFKTMVLELNASDDRGIDVVRE 99
Query: 357 QIFQFASTKTMH--KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
QI FAST+ ++ K+ KL+ILDEADAMT+ AQ ALRRI+EK+T+N+RFC+ICNY +KI
Sbjct: 100 QIKTFASTRHIYALKAGIKLVILDEADAMTSAAQAALRRIMEKYTSNIRFCLICNYANKI 159
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLDY 441
PAIQSRCTRFRF P+ + ++ RL+Y
Sbjct: 160 IPAIQSRCTRFRFQPVPVAQMIQRLEY 186
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 107/193 (55%), Gaps = 28/193 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T+N+RFC+ICNY +KI PAIQSRCTRFRF P+ + ++ RL+Y+ ++E V V
Sbjct: 140 MEKYTSNIRFCLICNYANKIIPAIQSRCTRFRFQPVPVAQMIQRLEYIADREGVPVDRAA 199
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTIFT----------LLVSRVEKYRP- 108
A+ ++ GDMR+ + ++QS A A V ED ++ ++++ Y P
Sbjct: 200 FDALARIAQGDMRRAIYLMQSTFLASASARVTEDGVYANAGMPSPADLHAIAQILLYDPF 259
Query: 109 ----------------STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+ LD + + + +E+ + L +++++E+RL + TSE+
Sbjct: 260 AQAFCKISEIKKGKGFALLDMIHGLHEAVMLMELSPKVKAFLFEQLANMEWRLVSATSER 319
Query: 153 IQLSALIAAFNSA 165
IQL+AL+ F A
Sbjct: 320 IQLAALVGIFRLA 332
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 111/243 (45%), Gaps = 65/243 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LDE+V+H +I T+ I E L L+ + GT + + A
Sbjct: 20 VEKYRPRELDEIVAHDEIRGTLRRLIAERTLPHLL-------FYGPPGTGKTTAILACAR 72
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH--KSSYKLIILDEADAMTNDA 218
A+ K VLELNASDDRGI +VR+QI FAST+ ++ K+ KL+ILDEADAMT+ A
Sbjct: 73 EMFGAQFKTMVLELNASDDRGIDVVREQIKTFASTRHIYALKAGIKLVILDEADAMTSAA 132
Query: 219 QNALRR-----------------------------------------------------K 225
Q ALRR
Sbjct: 133 QAALRRIMEKYTSNIRFCLICNYANKIIPAIQSRCTRFRFQPVPVAQMIQRLEYIADREG 192
Query: 226 LPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTVYNSVGYPTKTEITNILR 284
+PV A+ ++ GDMR+ + ++QS A A V ED VY + G P+ ++ I +
Sbjct: 193 VPVDRAAFDALARIAQGDMRRAIYLMQSTFLASASARVTEDGVYANAGMPSPADLHAIAQ 252
Query: 285 WLL 287
LL
Sbjct: 253 ILL 255
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
+ KI EIK KG AL D++ + V +E+ + L +++++E+RL + TSE+IQL
Sbjct: 263 FCKISEIKKGKGFALLDMIHGLHEAVMLMELSPKVKAFLFEQLANMEWRLVSATSERIQL 322
Query: 513 SALIAAFNSAR---DKLEAPPDPQ 533
+AL+ F A D E+ DP+
Sbjct: 323 AALVGIFRLAASMIDDSESGMDPK 346
>gi|307108040|gb|EFN56281.1| hypothetical protein CHLNCDRAFT_145161 [Chlorella variabilis]
Length = 328
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/150 (64%), Positives = 119/150 (79%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I + +DEN+LPHLLFYGPPGTGKT+TILA AR++Y + N M LELNASDDRGI
Sbjct: 27 DIIDTIRKLLDENQLPHLLFYGPPGTGKTSTILAIAREIYGSSLGN-MTLELNASDDRGI 85
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR++I FAST+T+ + +KLIILDE DAMT DAQ ALRR++EK+T N RFC+ICNY+
Sbjct: 86 AVVRNEIQDFASTRTIFSNKFKLIILDECDAMTKDAQFALRRVMEKYTRNARFCLICNYV 145
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRF PL + RL+Y
Sbjct: 146 SKIIPALQSRCTRFRFQPLPGEFVKGRLEY 175
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 111/196 (56%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFC+ICNY+SKI PA+QSRCTRFRF PL + RL+Y+ +QE + VT G
Sbjct: 129 MEKYTRNARFCLICNYVSKIIPALQSRCTRFRFQPLPGEFVKGRLEYICQQESIKVTQGG 188
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL----LVSRVEKYRPSTLDE--- 113
+A+I+L GDMR+ LN+LQS + A EV D+ + L +E+ L+E
Sbjct: 189 LEALIELGCGDMRRTLNLLQSTVMS-AGEVTGDSAYATAGKPLPQDIERCAQWLLNEPLG 247
Query: 114 --------------------LVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
L + I +P + + LV KM+DIE+RLA GTS+++
Sbjct: 248 EAFQHMLDLQLQKGVALVDILQQLHPFVFRIGMPPPVRIQLVSKMADIEHRLAYGTSDRL 307
Query: 154 QLSALIAAFNSARDKL 169
QL AL AF A+D +
Sbjct: 308 QLGALCGAFAEAKDGI 323
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 119/252 (47%), Gaps = 63/252 (25%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 157
V EKYRP TLD++ +H DII TI + E+ L L+ + GT + + A
Sbjct: 8 VPWSEKYRPRTLDQISAHTDIIDTIRKLLDENQLPHLL-------FYGPPGTGKTSTILA 60
Query: 158 LIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
+ + LELNASDDRGI +VR++I FAST+T+ + +KLIILDE DAMT D
Sbjct: 61 IAREIYGSSLGNMTLELNASDDRGIAVVRNEIQDFASTRTIFSNKFKLIILDECDAMTKD 120
Query: 218 AQNALRR-----------------------------------KLP--------------- 227
AQ ALRR LP
Sbjct: 121 AQFALRRVMEKYTRNARFCLICNYVSKIIPALQSRCTRFRFQPLPGEFVKGRLEYICQQE 180
Query: 228 ---VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
VT G +A+I+L GDMR+ LN+LQS + A EV D+ Y + G P +I +
Sbjct: 181 SIKVTQGGLEALIELGCGDMRRTLNLLQSTVMS-AGEVTGDSAYATAGKPLPQDIERCAQ 239
Query: 285 WLLNESMDLCYK 296
WLLNE + ++
Sbjct: 240 WLLNEPLGEAFQ 251
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 51/71 (71%)
Query: 458 EIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
+++++KG+AL DIL ++ V R+ +P + + LV KM+DIE+RLA GTS+++QL AL
Sbjct: 255 DLQLQKGVALVDILQQLHPFVFRIGMPPPVRIQLVSKMADIEHRLAYGTSDRLQLGALCG 314
Query: 518 AFNSARDKLEA 528
AF A+D + A
Sbjct: 315 AFAEAKDGIVA 325
>gi|403160320|ref|XP_003320851.2| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169507|gb|EFP76432.2| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 352
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/151 (64%), Positives = 118/151 (78%), Gaps = 1/151 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLY-TKAQFNAMVLELNASDDRG 350
D+ I +FI N+LPHLLFYGPPGTGKT+TILA AR+L+ T F +LELNASDDRG
Sbjct: 48 DIIQTIQKFISANQLPHLLFYGPPGTGKTSTILAVARQLFQTPMSFKNNILELNASDDRG 107
Query: 351 IGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
I +VR+QI FAS + + S +KLIILDEAD MT AQ+ALRR+IE++T NVRFCIICNY
Sbjct: 108 IDVVREQIKNFASARMVFSSGFKLIILDEADQMTQAAQSALRRVIEQYTKNVRFCIICNY 167
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+++I PAIQSRCTRFRFGPLD I R+ +
Sbjct: 168 VNRINPAIQSRCTRFRFGPLDHPEIERRIAH 198
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 121/192 (63%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY+++I PAIQSRCTRFRFGPLD I R+ +V + E V ++ DG
Sbjct: 152 IEQYTKNVRFCIICNYVNRINPAIQSRCTRFRFGPLDHPEIERRIAHVADAESVKISDDG 211
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVS----RVEKYRPSTL-DEL- 114
+KA+++L GDMR+VLN++Q+ + + +V+ED ++ S ++EK S + DE
Sbjct: 212 RKALLNLCKGDMRRVLNVMQACHSGYG-KVDEDAVYECTGSPHPKQIEKIVESMMNDEFQ 270
Query: 115 --------------VSHQDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
++ QDIIS TI ++ + ++ ++S IE+RL+ G +EKI
Sbjct: 271 TSFKRIQDIKINYGLALQDIISGIYDYLRTIVFEKNAQIYILDQLSQIEHRLSTGATEKI 330
Query: 154 QLSALIAAFNSA 165
QLS+L+ +F A
Sbjct: 331 QLSSLLGSFRIA 342
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 124/252 (49%), Gaps = 67/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRPSTLD++VSHQDII TI+ + + + + L G + S ++A
Sbjct: 32 VEKYRPSTLDDVVSHQDIIQTIQ--------KFISANQLPHLLFYGPPGTGKTSTILAVA 83
Query: 162 ---FNSARD-KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
F + K +LELNASDDRGI +VR+QI FAS + + S +KLIILDEAD MT
Sbjct: 84 RQLFQTPMSFKNNILELNASDDRGIDVVREQIKNFASARMVFSSGFKLIILDEADQMTQA 143
Query: 218 AQNALRR----------------------------------------------------- 224
AQ+ALRR
Sbjct: 144 AQSALRRVIEQYTKNVRFCIICNYVNRINPAIQSRCTRFRFGPLDHPEIERRIAHVADAE 203
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
+ ++ DG+KA+++L GDMR+VLN++Q+ + + +V+ED VY G P +I I+
Sbjct: 204 SVKISDDGRKALLNLCKGDMRRVLNVMQACHSGYG-KVDEDAVYECTGSPHPKQIEKIVE 262
Query: 285 WLLNESMDLCYK 296
++N+ +K
Sbjct: 263 SMMNDEFQTSFK 274
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 47/70 (67%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
+ +IQ+IKI GLAL DI++ I + + ++ + ++ ++S IE+RL+ G +EKIQL
Sbjct: 273 FKRIQDIKINYGLALQDIISGIYDYLRTIVFEKNAQIYILDQLSQIEHRLSTGATEKIQL 332
Query: 513 SALIAAFNSA 522
S+L+ +F A
Sbjct: 333 SSLLGSFRIA 342
>gi|388858041|emb|CCF48278.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Ustilago
hordei]
Length = 343
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 100/152 (65%), Positives = 118/152 (77%), Gaps = 3/152 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I FID N LPHLLFYGPPGTGKT+TILA ARK++ QF VLELNASDDRGI
Sbjct: 43 DITSTIQNFIDRNRLPHLLFYGPPGTGKTSTILAMARKIF-GPQFRNSVLELNASDDRGI 101
Query: 352 GIVRDQIFQFASTKTM--HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+VR+QI FASTK++ K +KLI+LDEADAMT AQ ALRR+IE++T NVRFCIICN
Sbjct: 102 EVVREQIKGFASTKSVFSSKGGFKLIVLDEADAMTQAAQGALRRVIEQYTKNVRFCIICN 161
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
Y++KI PAIQSRCTRFRF PL + RL++
Sbjct: 162 YVNKIIPAIQSRCTRFRFNPLQLDQVEDRLNH 193
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 114/191 (59%), Gaps = 26/191 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY++KI PAIQSRCTRFRF PL + RL++VIE E +T DG
Sbjct: 147 IEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLQLDQVEDRLNHVIENEGCKITQDG 206
Query: 61 KKAIIDLSDGDMRKVLNILQS--AATAHADEV-----------------------NEDTI 95
K+A++ LS GDMR+ LN+LQ+ AA+ H DE E T
Sbjct: 207 KEALLKLSRGDMRRALNVLQACHAASDHIDETAVYNCTGNPHPSDIEAMLKSMMQEEFTT 266
Query: 96 FTLLVSRVEKYRPSTLDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
+S ++ + L +++S D+++TI++P + L+ ++ E+RL+ G SEKIQ
Sbjct: 267 AYTTISGLKTAKGIALADMISGVYDLLATIKLPAKSKIYLLDHLAHTEHRLSTGGSEKIQ 326
Query: 155 LSALIAAFNSA 165
L+AL+ A A
Sbjct: 327 LTALLGAVKVA 337
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 127/254 (50%), Gaps = 65/254 (25%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
L+ VEKYRP+TL++LVSH+DI STI+ I + L L+ + GT + +
Sbjct: 23 LLPWVEKYRPATLEDLVSHKDITSTIQNFIDRNRLPHLL-------FYGPPGTGKTSTIL 75
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTM--HKSSYKLIILDEADAM 214
A+ + + VLELNASDDRGI +VR+QI FASTK++ K +KLI+LDEADAM
Sbjct: 76 AMARKIFGPQFRNSVLELNASDDRGIEVVREQIKGFASTKSVFSSKGGFKLIVLDEADAM 135
Query: 215 TNDAQ--------------------NALRRKLP--------------------------- 227
T AQ N + + +P
Sbjct: 136 TQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLQLDQVEDRLNHVI 195
Query: 228 ------VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITN 281
+T DGK+A++ LS GDMR+ LN+LQ A A +D ++E VYN G P ++I
Sbjct: 196 ENEGCKITQDGKEALLKLSRGDMRRALNVLQ-ACHAASDHIDETAVYNCTGNPHPSDIEA 254
Query: 282 ILRWLLNESMDLCY 295
+L+ ++ E Y
Sbjct: 255 MLKSMMQEEFTTAY 268
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I +K KG+AL D+++ + L+ +++P + L+ ++ E+RL+ G SEKIQL
Sbjct: 268 YTTISGLKTAKGIALADMISGVYDLLATIKLPAKSKIYLLDHLAHTEHRLSTGGSEKIQL 327
Query: 513 SALIAAFNSA 522
+AL+ A A
Sbjct: 328 TALLGAVKVA 337
>gi|336368487|gb|EGN96830.1| hypothetical protein SERLA73DRAFT_111563 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381281|gb|EGO22433.1| hypothetical protein SERLADRAFT_357265 [Serpula lacrymans var.
lacrymans S7.9]
Length = 354
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 94/139 (67%), Positives = 113/139 (81%), Gaps = 1/139 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FID+N LPHLLFYGPPGTGKT+TILA AR++Y ++ +LELNASDDRGI
Sbjct: 56 DITTTIEKFIDKNRLPHLLFYGPPGTGKTSTILAVARRIYG-PEYRKQILELNASDDRGI 114
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI QFA T+T+ +KLIILDEAD MT AQ ALRR+IE++T NVRFCIICNY+
Sbjct: 115 DVVREQIKQFAETRTLFARGFKLIILDEADMMTQQAQAALRRVIEQYTKNVRFCIICNYV 174
Query: 412 SKIPPAIQSRCTRFRFGPL 430
+KI PAIQSRCTRFRF PL
Sbjct: 175 NKIAPAIQSRCTRFRFSPL 193
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 112/192 (58%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY++KI PAIQSRCTRFRF PL + R+ VIE E V +T DG
Sbjct: 158 IEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIVEVEKRIGTVIEAEHVKLTEDG 217
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
KKA++ LS GDMR+ LN+LQ+ A+ D V E I+
Sbjct: 218 KKALLKLSKGDMRRALNVLQACHAAY-DSVGETEIYNCTGNPHPSDIENIVNSMLSDEFT 276
Query: 99 ----LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
++S ++ R L +L+S + I TIE + L+ ++ E+RL+AG SEKI
Sbjct: 277 TSYQMISTMKTERGLALQDLISGAYEYIETIEFKPQARIYLLDYLATTEHRLSAGASEKI 336
Query: 154 QLSALIAAFNSA 165
QLSA++ AF +A
Sbjct: 337 QLSAMLGAFKNA 348
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 126/250 (50%), Gaps = 63/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD++VSH+DI +TIE I ++ L L+ + GT + + A+
Sbjct: 40 VEKYRPVTLDDVVSHKDITTTIEKFIDKNRLPHLL-------FYGPPGTGKTSTILAVAR 92
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ ++LELNASDDRGI +VR+QI QFA T+T+ +KLIILDEAD MT AQ
Sbjct: 93 RIYGPEYRKQILELNASDDRGIDVVREQIKQFAETRTLFARGFKLIILDEADMMTQQAQA 152
Query: 221 ALRR-----------------------------------KLPV----------------- 228
ALRR LP+
Sbjct: 153 ALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIVEVEKRIGTVIEAEHVK 212
Query: 229 -TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
T DGKKA++ LS GDMR+ LN+LQ+ A+ D V E +YN G P ++I NI+ +L
Sbjct: 213 LTEDGKKALLKLSKGDMRRALNVLQACHAAY-DSVGETEIYNCTGNPHPSDIENIVNSML 271
Query: 288 NESMDLCYKI 297
++ Y++
Sbjct: 272 SDEFTTSYQM 281
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I +K E+GLAL D+++ + +E + L+ ++ E+RL+AG SEKIQL
Sbjct: 279 YQMISTMKTERGLALQDLISGAYEYIETIEFKPQARIYLLDYLATTEHRLSAGASEKIQL 338
Query: 513 SALIAAFNSA 522
SA++ AF +A
Sbjct: 339 SAMLGAFKNA 348
>gi|168037225|ref|XP_001771105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677638|gb|EDQ64106.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 365
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 101/153 (66%), Positives = 118/153 (77%), Gaps = 4/153 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+R EN LPHLL YGPPGTGKT+TILA ARKLY AQ+ M+LELNASDDRGI
Sbjct: 50 DIIDTIDRLTGENRLPHLLLYGPPGTGKTSTILAVARKLY-GAQYQNMILELNASDDRGI 108
Query: 352 GIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
+VR QI FASTK++ K + KL+ILDEADAMT DAQ ALRR+IEK+T + RFC+IC
Sbjct: 109 EVVRQQIQDFASTKSISFGPKVNVKLVILDEADAMTKDAQFALRRVIEKYTKSTRFCLIC 168
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
NY SKI PA+QSRCTRFRF PLD + + RL Y
Sbjct: 169 NYASKIIPALQSRCTRFRFAPLDPANVTERLRY 201
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 115/206 (55%), Gaps = 37/206 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T + RFC+ICNY SKI PA+QSRCTRFRF PLD + + RL YVI+QE ++VT G
Sbjct: 155 IEKYTKSTRFCLICNYASKIIPALQSRCTRFRFAPLDPANVTERLRYVIQQEGLDVTDGG 214
Query: 61 KKAIIDLSDGDMRKVLNILQSA--ATAHADEVN-------------EDTIFTLLVSRVEK 105
AI+ L++GD+RK LNILQSA A+ H E E + LL
Sbjct: 215 LAAIVRLANGDLRKALNILQSAQMASPHLTEEAVYLCTGNPMPKDIEQIAYWLLNEPFST 274
Query: 106 YRPSTLDELVS--H--------------------QDIISTIEIPESMLVDLVLKMSDIEY 143
S L+ L+ H Q + TI +P ++ V L+ ++D+EY
Sbjct: 275 SFQSILNNLIKLFHDITKMKTSKGLALVDVARELQPFVFTINMPPTVRVQLIDALADVEY 334
Query: 144 RLAAGTSEKIQLSALIAAFNSARDKL 169
RLA GT+EK+QL AL+ AF AR L
Sbjct: 335 RLAFGTNEKLQLGALLGAFTRARTAL 360
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 121/252 (48%), Gaps = 66/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP++L ++ +H+DII TI+ E+ L L+L GT + + A+
Sbjct: 34 VEKYRPTSLADVAAHKDIIDTIDRLTGENRLPHLLLYGP-------PGTGKTSTILAVAR 86
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTND 217
A+ + +LELNASDDRGI +VR QI FASTK++ K + KL+ILDEADAMT D
Sbjct: 87 KLYGAQYQNMILELNASDDRGIEVVRQQIQDFASTKSISFGPKVNVKLVILDEADAMTKD 146
Query: 218 AQNALRR----------------------------------------------------- 224
AQ ALRR
Sbjct: 147 AQFALRRVIEKYTKSTRFCLICNYASKIIPALQSRCTRFRFAPLDPANVTERLRYVIQQE 206
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
L VT G AI+ L++GD+RK LNILQSA A + + E+ VY G P +I I
Sbjct: 207 GLDVTDGGLAAIVRLANGDLRKALNILQSAQMA-SPHLTEEAVYLCTGNPMPKDIEQIAY 265
Query: 285 WLLNESMDLCYK 296
WLLNE ++
Sbjct: 266 WLLNEPFSTSFQ 277
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%)
Query: 448 NIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTS 507
N+I + I ++K KGLAL D+ E+ V + +P ++ V L+ ++D+EYRLA GT+
Sbjct: 282 NLIKLFHDITKMKTSKGLALVDVARELQPFVFTINMPPTVRVQLIDALADVEYRLAFGTN 341
Query: 508 EKIQLSALIAAFNSARDKLEA 528
EK+QL AL+ AF AR L A
Sbjct: 342 EKLQLGALLGAFTRARTALVA 362
>gi|302687482|ref|XP_003033421.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
gi|300107115|gb|EFI98518.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
Length = 343
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/149 (63%), Positives = 117/149 (78%), Gaps = 1/149 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I++FI++N LPHLLFYGPPGTGKT+TILA AR++Y ++ +LELNASDDRGI
Sbjct: 45 DITTTIDKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIY-GPEYRKQILELNASDDRGI 103
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI QFA T+T+ +KL+ILDEAD MT AQ ALRR+IE++T NVRFCIICNY+
Sbjct: 104 DVVREQIKQFAETRTLFSKGFKLVILDEADMMTQAAQAALRRVIEQYTRNVRFCIICNYV 163
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
KI PAIQSRCTRFRF PL + R+D
Sbjct: 164 GKIAPAIQSRCTRFRFSPLPIKEVERRVD 192
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 115/192 (59%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY+ KI PAIQSRCTRFRF PL + R+D VIE E V +TPDG
Sbjct: 147 IEQYTRNVRFCIICNYVGKIAPAIQSRCTRFRFSPLPIKEVERRVDLVIEAEGVTITPDG 206
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
K A++ L+ GDMR+VLN+LQ+ A+ +++ E+ ++
Sbjct: 207 KAALLRLARGDMRRVLNVLQACYAAY-EKITENEVYACTGAPHPADIETIVNSMLGDEFT 265
Query: 99 ----LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
++S+++ R L +L + D I TIE+ + L+ ++ E+RL+ G SEKI
Sbjct: 266 TAYEMISKMKTERGLALQDLTAGAFDYIDTIELKPHARIYLLDHLATTEHRLSTGGSEKI 325
Query: 154 QLSALIAAFNSA 165
Q++AL+ AF +A
Sbjct: 326 QMTALLGAFKNA 337
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 125/250 (50%), Gaps = 63/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD++VSH+DI +TI+ I ++ L L+ + GT + + A+
Sbjct: 29 VEKYRPVTLDDVVSHKDITTTIDKFIEKNRLPHLL-------FYGPPGTGKTSTILAVAR 81
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ ++LELNASDDRGI +VR+QI QFA T+T+ +KL+ILDEAD MT AQ
Sbjct: 82 RIYGPEYRKQILELNASDDRGIDVVREQIKQFAETRTLFSKGFKLVILDEADMMTQAAQA 141
Query: 221 ALRR-----------------------------------KLP------------------ 227
ALRR LP
Sbjct: 142 ALRRVIEQYTRNVRFCIICNYVGKIAPAIQSRCTRFRFSPLPIKEVERRVDLVIEAEGVT 201
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+TPDGK A++ L+ GDMR+VLN+LQ+ A+ +++ E+ VY G P +I I+ +L
Sbjct: 202 ITPDGKAALLRLARGDMRRVLNVLQACYAAY-EKITENEVYACTGAPHPADIETIVNSML 260
Query: 288 NESMDLCYKI 297
+ Y++
Sbjct: 261 GDEFTTAYEM 270
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I ++K E+GLAL D+ + +E+ + L+ ++ E+RL+ G SEKIQ+
Sbjct: 268 YEMISKMKTERGLALQDLTAGAFDYIDTIELKPHARIYLLDHLATTEHRLSTGGSEKIQM 327
Query: 513 SALIAAFNSA 522
+AL+ AF +A
Sbjct: 328 TALLGAFKNA 337
>gi|302813098|ref|XP_002988235.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
gi|302819400|ref|XP_002991370.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300140763|gb|EFJ07482.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300143967|gb|EFJ10654.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
Length = 332
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 100/153 (65%), Positives = 120/153 (78%), Gaps = 4/153 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+R EN+LPHLL YGPPGTGKT+TILA ARKLY QF M+LELNASDDRGI
Sbjct: 28 DIIDTIDRLTAENKLPHLLLYGPPGTGKTSTILAVARKLY-GPQFQNMILELNASDDRGI 86
Query: 352 GIVRDQIFQFASTKTM---HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
+VR QI FAST+++ K++ KLIILDEADAMT DAQ +LRRIIEK+T N RFC+IC
Sbjct: 87 DVVRQQIQDFASTQSISFGEKANVKLIILDEADAMTKDAQFSLRRIIEKYTKNTRFCLIC 146
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
NY+SKI PA+QSRCTRFRF PL + + RL++
Sbjct: 147 NYVSKIIPALQSRCTRFRFPPLQAQHVRERLEF 179
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 86/194 (44%), Positives = 117/194 (60%), Gaps = 30/194 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFC+ICNY+SKI PA+QSRCTRFRF PL + + RL++VI+QE+++VT DG
Sbjct: 133 IEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFPPLQAQHVRERLEFVIDQERLDVTEDG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSA--ATAHADE----------------------VNEDTIF 96
AI+ LS+GDMRK LNILQS A H E +NE F
Sbjct: 193 LSAIVRLSNGDMRKALNILQSTQMAEPHVTEAAVYSCTGNPTPKEIEQIASWLLNES--F 250
Query: 97 TLLVSRVEKYRPST----LDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
S + + + S +D + Q I TI +P ++ V L+ ++DIEYRLA+G +EK
Sbjct: 251 QSAYSNIVQLKTSKGLALVDVVRELQPFIFTISMPGNIRVPLINCLADIEYRLASGPNEK 310
Query: 153 IQLSALIAAFNSAR 166
+QL AL++AF R
Sbjct: 311 LQLGALVSAFTHTR 324
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 122/251 (48%), Gaps = 66/251 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP++L ++ +H+DII TI+ E+ L L+L GT + + A+
Sbjct: 12 VEKYRPASLADVAAHKDIIDTIDRLTAENKLPHLLLYGP-------PGTGKTSTILAVAR 64
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTM---HKSSYKLIILDEADAMTND 217
+ + +LELNASDDRGI +VR QI FAST+++ K++ KLIILDEADAMT D
Sbjct: 65 KLYGPQFQNMILELNASDDRGIDVVRQQIQDFASTQSISFGEKANVKLIILDEADAMTKD 124
Query: 218 AQNALRR----------------------------------------------------- 224
AQ +LRR
Sbjct: 125 AQFSLRRIIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFPPLQAQHVRERLEFVIDQE 184
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
+L VT DG AI+ LS+GDMRK LNILQS A V E VY+ G PT EI I
Sbjct: 185 RLDVTEDGLSAIVRLSNGDMRKALNILQSTQMAEP-HVTEAAVYSCTGNPTPKEIEQIAS 243
Query: 285 WLLNESMDLCY 295
WLLNES Y
Sbjct: 244 WLLNESFQSAY 254
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 48/71 (67%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I ++K KGLAL D++ E+ + + +P ++ V L+ ++DIEYRLA+G +EK+QL
Sbjct: 254 YSNIVQLKTSKGLALVDVVRELQPFIFTISMPGNIRVPLINCLADIEYRLASGPNEKLQL 313
Query: 513 SALIAAFNSAR 523
AL++AF R
Sbjct: 314 GALVSAFTHTR 324
>gi|449548327|gb|EMD39294.1| hypothetical protein CERSUDRAFT_152406 [Ceriporiopsis subvermispora
B]
Length = 357
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 95/148 (64%), Positives = 117/148 (79%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI++N LPHLLFYGPPGTGKT+TILA AR++Y +++ +LELNASDDRGI
Sbjct: 58 DITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG-SEYRKQILELNASDDRGI 116
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI FA T+T+ +KLIILDEAD MT AQ ALRR+IE++T NVRFCIICNY+
Sbjct: 117 DVVREQIKNFAETRTLFSKGFKLIILDEADMMTTAAQAALRRVIEQYTKNVRFCIICNYV 176
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+KI PAIQSRCTRFRF PL S + RL
Sbjct: 177 NKIVPAIQSRCTRFRFSPLPISEVEKRL 204
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 114/192 (59%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY++KI PAIQSRCTRFRF PL S + RL VIE E V +T DG
Sbjct: 160 IEQYTKNVRFCIICNYVNKIVPAIQSRCTRFRFSPLPISEVEKRLQKVIESEGVKLTDDG 219
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
KKA++ LS GDMR+ LN+LQ+ A+ D + E I+
Sbjct: 220 KKALLKLSKGDMRRALNVLQACHAAY-DLIGEAEIYNCTGNPHPSDIETVVNSMLSDDFT 278
Query: 99 ----LVSRVEKYRPSTLDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
++S ++ R L +L++ + I T++ + + L+ ++ IE+RL+ G +EKI
Sbjct: 279 TSHKMISALKVERGLALPDLINGVYEYIETVDFKPNARIYLLDILATIEHRLSTGANEKI 338
Query: 154 QLSALIAAFNSA 165
QL+AL+ AF +A
Sbjct: 339 QLTALLGAFKNA 350
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 125/250 (50%), Gaps = 63/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD++VSH+DI STIE I ++ L L+ + GT + + A+
Sbjct: 42 VEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLL-------FYGPPGTGKTSTILAVAR 94
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ + ++LELNASDDRGI +VR+QI FA T+T+ +KLIILDEAD MT AQ
Sbjct: 95 RIYGSEYRKQILELNASDDRGIDVVREQIKNFAETRTLFSKGFKLIILDEADMMTTAAQA 154
Query: 221 ALRR-----------------------------------KLPV----------------- 228
ALRR LP+
Sbjct: 155 ALRRVIEQYTKNVRFCIICNYVNKIVPAIQSRCTRFRFSPLPISEVEKRLQKVIESEGVK 214
Query: 229 -TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
T DGKKA++ LS GDMR+ LN+LQ+ A+ D + E +YN G P ++I ++ +L
Sbjct: 215 LTDDGKKALLKLSKGDMRRALNVLQACHAAY-DLIGEAEIYNCTGNPHPSDIETVVNSML 273
Query: 288 NESMDLCYKI 297
++ +K+
Sbjct: 274 SDDFTTSHKM 283
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 44/67 (65%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K+E+GLAL D++ + + ++ + + L+ ++ IE+RL+ G +EKIQL+AL
Sbjct: 284 ISALKVERGLALPDLINGVYEYIETVDFKPNARIYLLDILATIEHRLSTGANEKIQLTAL 343
Query: 516 IAAFNSA 522
+ AF +A
Sbjct: 344 LGAFKNA 350
>gi|358059664|dbj|GAA94596.1| hypothetical protein E5Q_01248 [Mixia osmundae IAM 14324]
Length = 414
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 120/166 (72%), Gaps = 16/166 (9%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTK----------------AQ 335
D+ I++FI N LPHLLFYGPPGTGKT+TILA ARK+Y +
Sbjct: 97 DIVSTIDKFISLNRLPHLLFYGPPGTGKTSTILAVARKIYGGTGNSIRGGVSGKGKEGSS 156
Query: 336 FNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRII 395
VLELNASDDRGI +VRDQI FAST+ + S YKLIILDEAD MT AQNALRR+I
Sbjct: 157 MRNNVLELNASDDRGIDVVRDQIKNFASTRMIFSSGYKLIILDEADMMTTTAQNALRRVI 216
Query: 396 EKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
E++T NVRFCIICNY+++I PA+QSRCTRFRFGPL+++ + R+ +
Sbjct: 217 EQYTKNVRFCIICNYVNRIIPAVQSRCTRFRFGPLETTEVDRRIQH 262
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 120/196 (61%), Gaps = 36/196 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY+++I PA+QSRCTRFRFGPL+++ + R+ +V++ E VN+T DG
Sbjct: 216 IEQYTKNVRFCIICNYVNRIIPAVQSRCTRFRFGPLETTEVDRRIQHVVDAESVNLTQDG 275
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
++A++ LS GDMR+ LN+LQ+ +A+ V+E I+ P+ +DE+V+
Sbjct: 276 REALLKLSKGDMRRALNVLQACHSAYP-VVDEGAIYAC----TGNPHPADIDEMVTSMMS 330
Query: 118 ---------------------QDII-------STIEIPESMLVDLVLKMSDIEYRLAAGT 149
QDII S +++P + L+ ++ IE+RL+ G
Sbjct: 331 DEFQTAYQRVVAIKTDKGLALQDIIAGLGEALSGLDMPPHARIYLLDHLAQIEHRLSTGG 390
Query: 150 SEKIQLSALIAAFNSA 165
SEK+Q++AL+ AF +A
Sbjct: 391 SEKLQMTALLGAFQNA 406
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 127/259 (49%), Gaps = 66/259 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVL-------KMSDI---EYRLAAGTS 150
VEKYRP+TLD++VSH+DI+STI+ I + L L+ K S I ++ GT
Sbjct: 81 VEKYRPATLDDVVSHKDIVSTIDKFISLNRLPHLLFYGPPGTGKTSTILAVARKIYGGTG 140
Query: 151 EKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDE 210
I+ + + VLELNASDDRGI +VRDQI FAST+ + S YKLIILDE
Sbjct: 141 NSIRGGVSGKGKEGSSMRNNVLELNASDDRGIDVVRDQIKNFASTRMIFSSGYKLIILDE 200
Query: 211 ADAMTNDAQNALR--------------------RKLP----------------------- 227
AD MT AQNALR R +P
Sbjct: 201 ADMMTTTAQNALRRVIEQYTKNVRFCIICNYVNRIIPAVQSRCTRFRFGPLETTEVDRRI 260
Query: 228 ----------VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKT 277
+T DG++A++ LS GDMR+ LN+LQ+ +A+ V+E +Y G P
Sbjct: 261 QHVVDAESVNLTQDGREALLKLSKGDMRRALNVLQACHSAYP-VVDEGAIYACTGNPHPA 319
Query: 278 EITNILRWLLNESMDLCYK 296
+I ++ ++++ Y+
Sbjct: 320 DIDEMVTSMMSDEFQTAYQ 338
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 46/70 (65%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y ++ IK +KGLAL DI+ + + L++P + L+ ++ IE+RL+ G SEK+Q+
Sbjct: 337 YQRVVAIKTDKGLALQDIIAGLGEALSGLDMPPHARIYLLDHLAQIEHRLSTGGSEKLQM 396
Query: 513 SALIAAFNSA 522
+AL+ AF +A
Sbjct: 397 TALLGAFQNA 406
>gi|320581211|gb|EFW95432.1| DNA replication factor C [Ogataea parapolymorpha DL-1]
Length = 325
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 95/150 (63%), Positives = 115/150 (76%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + +F E +PHLLFYGPPGTGKT+TI+A AR+LY K + MVLELNASDDRGI
Sbjct: 25 DVVQTVRKFAKEGRIPHLLFYGPPGTGKTSTIIALARELYGK-NYRNMVLELNASDDRGI 83
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRDQI FAST+ + S +KLIILDEADAM+N AQNALRR+IEK+T N RFCI+ NY
Sbjct: 84 DVVRDQIKNFASTRQIFNSGFKLIILDEADAMSNAAQNALRRVIEKYTKNTRFCILANYS 143
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
K+ PA+ SRCTRFRF PL S + R+DY
Sbjct: 144 HKLNPALLSRCTRFRFSPLADSALQDRVDY 173
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 114/238 (47%), Gaps = 64/238 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+ LD++ +D++ T+ E + L+ + GT + + AL
Sbjct: 9 VEKYRPAKLDDVYGQKDVVQTVRKFAKEGRIPHLL-------FYGPPGTGKTSTIIALAR 61
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ VLELNASDDRGI +VRDQI FAST+ + S +KLIILDEADAM+N AQN
Sbjct: 62 ELYGKNYRNMVLELNASDDRGIDVVRDQIKNFASTRQIFNSGFKLIILDEADAMSNAAQN 121
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR L
Sbjct: 122 ALRRVIEKYTKNTRFCILANYSHKLNPALLSRCTRFRFSPLADSALQDRVDYVIKAEGLK 181
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATA--HADEVNEDTVYNSVGYPTKTEITNIL 283
+ D ++++++LS+GDMR+ LN+LQ+ ATA +E+ +D VY VG P + +L
Sbjct: 182 IASDARQSLLELSEGDMRRALNVLQACATAVESGEEITQDMVYECVGAPRPQSVMTVL 239
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 112/194 (57%), Gaps = 29/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY K+ PA+ SRCTRFRF PL S + R+DYVI+ E + + D
Sbjct: 127 IEKYTKNTRFCILANYSHKLNPALLSRCTRFRFSPLADSALQDRVDYVIKAEGLKIASDA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA--HADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ 118
++++++LS+GDMR+ LN+LQ+ ATA +E+ +D ++ + + + + LD ++S+
Sbjct: 187 RQSLLELSEGDMRRALNVLQACATAVESGEEITQDMVYECVGAPRPQSVMTVLDAIMSND 246
Query: 119 -----DIISTIEIPESM-LVDLV-----------LK----------MSDIEYRLAAGTSE 151
++ I E + LVDL+ LK + DIEY ++ G S+
Sbjct: 247 WTDAYATMTKIRKTEGLALVDLMSGFVSVLDKYELKPRTRMAVLQGLGDIEYSISKGGSD 306
Query: 152 KIQLSALIAAFNSA 165
KIQ +A+I +A
Sbjct: 307 KIQCTAVIGVIKNA 320
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y + +I+ +GLAL D+++ ++ + E+ + ++ + DIEY ++ G S+KIQ
Sbjct: 251 YATMTKIRKTEGLALVDLMSGFVSVLDKYELKPRTRMAVLQGLGDIEYSISKGGSDKIQC 310
Query: 513 SALIAAFNSA 522
+A+I +A
Sbjct: 311 TAVIGVIKNA 320
>gi|213405245|ref|XP_002173394.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
gi|212001441|gb|EEB07101.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
Length = 338
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 96/149 (64%), Positives = 117/149 (78%), Gaps = 1/149 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + +FI N +PH+LFYGPPGTGKT+TILACA ++Y F V+ELNASDDRGI
Sbjct: 39 DIIATLEKFISTNRVPHMLFYGPPGTGKTSTILACANRIYG-PNFRNQVMELNASDDRGI 97
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI FASTK + S++KLIILDE DAMT AQNALRR+IEK+T NVRFCIICNY+
Sbjct: 98 DVVREQIKSFASTKQIFSSAFKLIILDETDAMTLAAQNALRRVIEKYTRNVRFCIICNYI 157
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
+KI PAIQSRCTRFRF PL + I ++D
Sbjct: 158 NKIAPAIQSRCTRFRFQPLPITEIEKKVD 186
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 117/194 (60%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNY++KI PAIQSRCTRFRF PL + I ++D V E+E ++P+G
Sbjct: 141 IEKYTRNVRFCIICNYINKIAPAIQSRCTRFRFQPLPITEIEKKVDEVAEKENCTISPEG 200
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL----VSRVEKYRPSTLDELV- 115
K A++ LS GDMRK LNILQ A A D V+E ++ + + ++ + S ++E V
Sbjct: 201 KTALLRLSKGDMRKALNILQ-ACHAVYDVVDEAAVYNCVGHPHPADIDYFLKSIMNEEVV 259
Query: 116 ---------------SHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ QDII+ I +IP + + ++ ++ IEYR++ G SEKI
Sbjct: 260 TASNAITKLKQDKGLALQDIIACISEAIDELQIPANARIFILDNLAKIEYRMSFGCSEKI 319
Query: 154 QLSALIAAFNSARD 167
QLSALIA + D
Sbjct: 320 QLSALIATIKTGVD 333
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 125/245 (51%), Gaps = 65/245 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP LD++V+H+DII+T+E + + + + L G + S ++A
Sbjct: 23 VEKYRPKNLDDVVAHKDIIATLE--------KFISTNRVPHMLFYGPPGTGKTSTILACA 74
Query: 163 N---SARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
N + +V+ELNASDDRGI +VR+QI FASTK + S++KLIILDE DAMT AQ
Sbjct: 75 NRIYGPNFRNQVMELNASDDRGIDVVREQIKSFASTKQIFSSAFKLIILDETDAMTLAAQ 134
Query: 220 NALRR-----------------------------------KLPVT--------------- 229
NALRR LP+T
Sbjct: 135 NALRRVIEKYTRNVRFCIICNYINKIAPAIQSRCTRFRFQPLPITEIEKKVDEVAEKENC 194
Query: 230 ---PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P+GK A++ LS GDMRK LNILQ A A D V+E VYN VG+P +I L+ +
Sbjct: 195 TISPEGKTALLRLSKGDMRKALNILQ-ACHAVYDVVDEAAVYNCVGHPHPADIDYFLKSI 253
Query: 287 LNESM 291
+NE +
Sbjct: 254 MNEEV 258
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I ++K +KGLAL DI+ IS + L+IP + + ++ ++ IEYR++ G SEKIQLSAL
Sbjct: 265 ITKLKQDKGLALQDIIACISEAIDELQIPANARIFILDNLAKIEYRMSFGCSEKIQLSAL 324
Query: 516 IAAFNSARD 524
IA + D
Sbjct: 325 IATIKTGVD 333
>gi|402223757|gb|EJU03821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 356
Score = 204 bits (520), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 93/148 (62%), Positives = 117/148 (79%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI++N LPHLLFYGPPGTGKT+TILA ARK+Y ++ +LELNASDDRGI
Sbjct: 58 DITSTIEKFIEQNRLPHLLFYGPPGTGKTSTILAVARKIYGN-EYRKQILELNASDDRGI 116
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI FA +T++ +KLI+LDEAD MT AQ+ALRR+IE++T NVRFCIICNY+
Sbjct: 117 DVVREQIKNFAEMRTLYSKGFKLIVLDEADMMTQAAQSALRRVIEQYTRNVRFCIICNYV 176
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+KI PAIQSRCTRFRF PL + I R+
Sbjct: 177 NKIIPAIQSRCTRFRFSPLPQTEIEKRI 204
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 113/192 (58%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY++KI PAIQSRCTRFRF PL + I R+ V+E E VN+T DG
Sbjct: 160 IEQYTRNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPQTEIEKRIKQVVEAEHVNLTEDG 219
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL--------------------- 99
K+A++ LS GDMR+ LNILQ+ A+ D +E I+
Sbjct: 220 KQALLKLSKGDMRRALNILQACHAAY-DRTDETAIYNCTGNPHPSDIEAIVTSMMNDEFS 278
Query: 100 -----VSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
VSR++ + L +L++ + + ++E+P V L+ ++ E+RL+ G SEK+
Sbjct: 279 TSYQKVSRMKTDKGLALQDLIAGTYEYLESLELPPQTRVYLLDHLATTEHRLSTGGSEKV 338
Query: 154 QLSALIAAFNSA 165
QL+AL+ A +
Sbjct: 339 QLTALLGAIKNG 350
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 128/254 (50%), Gaps = 64/254 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+TLD++VSH+DI STIE I ++ L L+ + GT + + A+
Sbjct: 42 VEKYRPATLDDVVSHKDITSTIEKFIEQNRLPHLL-------FYGPPGTGKTSTILAVAR 94
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ ++LELNASDDRGI +VR+QI FA +T++ +KLI+LDEAD MT AQ+
Sbjct: 95 KIYGNEYRKQILELNASDDRGIDVVREQIKNFAEMRTLYSKGFKLIVLDEADMMTQAAQS 154
Query: 221 ALRR-----------------------------------KLP------------------ 227
ALRR LP
Sbjct: 155 ALRRVIEQYTRNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPQTEIEKRIKQVVEAEHVN 214
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+T DGK+A++ LS GDMR+ LNILQ+ A+ D +E +YN G P ++I I+ ++
Sbjct: 215 LTEDGKQALLKLSKGDMRRALNILQACHAAY-DRTDETAIYNCTGNPHPSDIEAIVTSMM 273
Query: 288 NESMDLCY-KINRF 300
N+ Y K++R
Sbjct: 274 NDEFSTSYQKVSRM 287
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488
P D I++ + D+ S Y K+ +K +KGLAL D++ + LE+P
Sbjct: 262 PSDIEAIVTSMMNDEFS-----TSYQKVSRMKTDKGLALQDLIAGTYEYLESLELPPQTR 316
Query: 489 VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
V L+ ++ E+RL+ G SEK+QL+AL+ A +
Sbjct: 317 VYLLDHLATTEHRLSTGGSEKVQLTALLGAIKNG 350
>gi|393222049|gb|EJD07533.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 348
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 116/149 (77%), Gaps = 1/149 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI++N LPHLLFYGPPGTGKT+TILA AR++Y + +LELNASDDRGI
Sbjct: 48 DITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG-PDYRKQILELNASDDRGI 106
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+Q+ QFA T+T+ +KLIILDEAD MT AQ ALRR+IE++T NVRFCIICNY+
Sbjct: 107 DVVREQVKQFAETRTLFSKGFKLIILDEADMMTQAAQAALRRVIEQYTKNVRFCIICNYV 166
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
+KI PA+QSRCTRFRF PL + RL+
Sbjct: 167 NKITPAVQSRCTRFRFSPLPIKEVERRLE 195
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 114/192 (59%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY++KITPA+QSRCTRFRF PL + RL+ VIE E V +TPDG
Sbjct: 150 IEQYTKNVRFCIICNYVNKITPAVQSRCTRFRFSPLPIKEVERRLEGVIEAESVKLTPDG 209
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
K A++ LS GDMR+ LN+LQ+ A+ D + E I+
Sbjct: 210 KDALLKLSKGDMRRALNVLQACHAAY-DVIGETEIYNCTGSPQPKDIETVVTSMLGDEFT 268
Query: 99 ----LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
++S ++ R L +L++ D I TIE V L+ +++ EYRL+ G SEKI
Sbjct: 269 TSYEMISALKIERGLALQDLITGAYDYIETIEFGSQARVYLLDQLASTEYRLSTGGSEKI 328
Query: 154 QLSALIAAFNSA 165
QL+AL+ AF +A
Sbjct: 329 QLTALLGAFKNA 340
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 134/286 (46%), Gaps = 68/286 (23%)
Query: 67 LSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIE- 125
++D D N +A+ +D + VEKYRP TLD++VSH+DI STIE
Sbjct: 1 MADADATHSFNFKGKGKETYAEYTQDDNL-----PWVEKYRPVTLDDVVSHKDITSTIEK 55
Query: 126 -IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGI 184
I ++ L L+ + GT + + A+ + ++LELNASDDRGI +
Sbjct: 56 FIEKNRLPHLL-------FYGPPGTGKTSTILAVARRIYGPDYRKQILELNASDDRGIDV 108
Query: 185 VRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRR-------------------- 224
VR+Q+ QFA T+T+ +KLIILDEAD MT AQ ALRR
Sbjct: 109 VREQVKQFAETRTLFSKGFKLIILDEADMMTQAAQAALRRVIEQYTKNVRFCIICNYVNK 168
Query: 225 ---------------KLPV------------------TPDGKKAIIDLSDGDMRKVLNIL 251
LP+ TPDGK A++ LS GDMR+ LN+L
Sbjct: 169 ITPAVQSRCTRFRFSPLPIKEVERRLEGVIEAESVKLTPDGKDALLKLSKGDMRRALNVL 228
Query: 252 QSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYKI 297
Q+ A+ D + E +YN G P +I ++ +L + Y++
Sbjct: 229 QACHAAY-DVIGETEIYNCTGSPQPKDIETVVTSMLGDEFTTSYEM 273
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I +KIE+GLAL D++T + +E V L+ +++ EYRL+ G SEKIQL
Sbjct: 271 YEMISALKIERGLALQDLITGAYDYIETIEFGSQARVYLLDQLASTEYRLSTGGSEKIQL 330
Query: 513 SALIAAFNSA 522
+AL+ AF +A
Sbjct: 331 TALLGAFKNA 340
>gi|403218101|emb|CCK72593.1| hypothetical protein KNAG_0K02300 [Kazachstania naganishii CBS
8797]
Length = 334
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 115/143 (80%), Gaps = 1/143 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+++FI EN LPHLLFYGPPGTGKT+TI+A AR++Y K ++ MVLELNASDDRGI +VR+
Sbjct: 30 LHKFIQENRLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSHMVLELNASDDRGIDVVRN 88
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI +FAST+ + +KL+ILDEADAMTN AQNALRRIIEK+T N RFCI+ NY K+ P
Sbjct: 89 QIKEFASTRQIFSRGFKLVILDEADAMTNAAQNALRRIIEKYTKNTRFCILANYSHKLTP 148
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
A+QSRCTRFRF PL I R+
Sbjct: 149 ALQSRCTRFRFQPLPEDAIKRRI 171
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 119/252 (47%), Gaps = 66/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS+LD++ +I+S + I E+ L L+ + GT + + AL
Sbjct: 9 VEKYRPSSLDDVYGQGEIVSVLHKFIQENRLPHLL-------FYGPPGTGKTSTIVALAR 61
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
VLELNASDDRGI +VR+QI +FAST+ + +KL+ILDEADAMTN AQN
Sbjct: 62 EIYGKNYSHMVLELNASDDRGIDVVRNQIKEFASTRQIFSRGFKLVILDEADAMTNAAQN 121
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR L
Sbjct: 122 ALRRIIEKYTKNTRFCILANYSHKLTPALQSRCTRFRFQPLPEDAIKRRIANVLVHEHLR 181
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTVYNSVGYPTKTEITNIL 283
V+ D +A+I LS GDMR+VLN+LQ++ +DEV+ DT+Y G ++ IL
Sbjct: 182 VSEDAVQALIKLSKGDMRRVLNVLQASKATLGDDESDEVSTDTIYECCGAARPADLRKIL 241
Query: 284 RWLLNESMDLCY 295
+ +L E + Y
Sbjct: 242 KSILEEDWNTAY 253
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 112/205 (54%), Gaps = 33/205 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY K+TPA+QSRCTRFRF PL I R+ V+ E + V+ D
Sbjct: 127 IEKYTKNTRFCILANYSHKLTPALQSRCTRFRFQPLPEDAIKRRIANVLVHEHLRVSEDA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTIFTLLVSR----VEKYRPSTLD 112
+A+I LS GDMR+VLN+LQ++ +DEV+ DTI+ + + K S L+
Sbjct: 187 VQALIKLSKGDMRRVLNVLQASKATLGDDESDEVSTDTIYECCGAARPADLRKILKSILE 246
Query: 113 E----------LVSHQDIISTIEIPESML--------------VDLVLKMSDIEYRLAAG 148
E + + ++ I++ E ++ ++L +K++D+EY ++ G
Sbjct: 247 EDWNTAYYTLHKIRQEQGLALIDLIEGIMEILDQYELQHEQTRINLCMKLADLEYAISKG 306
Query: 149 TSEKIQLSALIAAFNSARDKLEVLE 173
KIQ SALI + + EVLE
Sbjct: 307 GDSKIQSSALIGVVKTCFEN-EVLE 330
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIP-ESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
Y + +I+ E+GLAL D++ I ++ + E+ E ++L +K++D+EY ++ G KIQ
Sbjct: 253 YYTLHKIRQEQGLALIDLIEGIMEILDQYELQHEQTRINLCMKLADLEYAISKGGDSKIQ 312
Query: 512 LSALIAAFNSA--RDKLEAPP 530
SALI + + LEA P
Sbjct: 313 SSALIGVVKTCFENEVLEAQP 333
>gi|242211529|ref|XP_002471602.1| predicted protein [Postia placenta Mad-698-R]
gi|220729278|gb|EED83155.1| predicted protein [Postia placenta Mad-698-R]
Length = 350
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/148 (64%), Positives = 116/148 (78%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI++N LPHLLFYGPPGTGKT+TILA AR++Y K + +LELNASDDRGI
Sbjct: 50 DITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGK-DYRKQILELNASDDRGI 108
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI FA T+T+ YKLIILDEAD MT AQ ALRR+IE++T NVRFCIICNY+
Sbjct: 109 DVVREQIKNFAETRTLFLKGYKLIILDEADMMTTAAQAALRRVIEQYTKNVRFCIICNYV 168
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+KI PAIQSRCTRFRF PL + + RL
Sbjct: 169 NKIIPAIQSRCTRFRFSPLPITEVERRL 196
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 114/192 (59%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY++KI PAIQSRCTRFRF PL + + RL VIE E V +T DG
Sbjct: 152 IEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPITEVERRLSGVIEAEGVKLTEDG 211
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
KKA++ LS GDMR+ LN+LQ+ A+ D + ED I+
Sbjct: 212 KKALLKLSKGDMRRALNVLQACHAAY-DLIGEDEIYNCTGNPHPTDIESVVNSMLSDDFT 270
Query: 99 ----LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
++S ++ R L +L++ + I TI+ + L+ ++ E+RL++G +EKI
Sbjct: 271 TSYKMISALKVERGLALPDLINGAYEYIETIDFKPHARIYLLDFLATTEHRLSSGANEKI 330
Query: 154 QLSALIAAFNSA 165
QL+AL+ AF +A
Sbjct: 331 QLTALLGAFKNA 342
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 134/273 (49%), Gaps = 68/273 (24%)
Query: 80 QSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLK 137
+ A+ H + + D + VEKYRP TLD++VSH+DI STIE I ++ L L+
Sbjct: 16 KGKASEHEEAYDNDNL-----PWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLL-- 68
Query: 138 MSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKT 197
+ GT + + A+ + ++LELNASDDRGI +VR+QI FA T+T
Sbjct: 69 -----FYGPPGTGKTSTILAVARRIYGKDYRKQILELNASDDRGIDVVREQIKNFAETRT 123
Query: 198 MHKSSYKLIILDEADAMTNDAQNALRR--------------------------------- 224
+ YKLIILDEAD MT AQ ALRR
Sbjct: 124 LFLKGYKLIILDEADMMTTAAQAALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFR 183
Query: 225 --KLPV------------------TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNE 264
LP+ T DGKKA++ LS GDMR+ LN+LQ+ A+ D + E
Sbjct: 184 FSPLPITEVERRLSGVIEAEGVKLTEDGKKALLKLSKGDMRRALNVLQACHAAY-DLIGE 242
Query: 265 DTVYNSVGYPTKTEITNILRWLLNESMDLCYKI 297
D +YN G P T+I +++ +L++ YK+
Sbjct: 243 DEIYNCTGNPHPTDIESVVNSMLSDDFTTSYKM 275
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I +K+E+GLAL D++ + ++ + L+ ++ E+RL++G +EKIQL
Sbjct: 273 YKMISALKVERGLALPDLINGAYEYIETIDFKPHARIYLLDFLATTEHRLSSGANEKIQL 332
Query: 513 SALIAAFNSA 522
+AL+ AF +A
Sbjct: 333 TALLGAFKNA 342
>gi|390600120|gb|EIN09515.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 354
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/139 (68%), Positives = 110/139 (79%), Gaps = 1/139 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I FI +N LPHLLFYGPPGTGKT+TILA AR++Y F +LELNASDDRGI
Sbjct: 55 DITCTIENFIQKNRLPHLLFYGPPGTGKTSTILAVARRIYGD-DFRKQILELNASDDRGI 113
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI QFA T+T+ YKLIILDEAD MT AQ ALRR+IE++T NVRFCIICNY+
Sbjct: 114 DVVREQIKQFAETRTLFSKGYKLIILDEADMMTQAAQAALRRVIEQYTKNVRFCIICNYV 173
Query: 412 SKIPPAIQSRCTRFRFGPL 430
+KI PAIQSRCTRFRF PL
Sbjct: 174 NKITPAIQSRCTRFRFSPL 192
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 116/204 (56%), Gaps = 35/204 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY++KITPAIQSRCTRFRF PL + R+ V++ E V + DG
Sbjct: 157 IEQYTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPIPEVERRVQTVVDAEGVQLREDG 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
KKA++ LS GDMR+ LN+LQ+ A+ DE+ E I+
Sbjct: 217 KKALLKLSKGDMRRALNVLQACHAAY-DEIGETEIYNCTGNPHPSDIETIVNSMLADEFT 275
Query: 99 -----LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+++ ++ R L +L++ D I TIE+ L+ ++ EYRL+ G SEK
Sbjct: 276 TSYQSVINALKTERGLALQDLLAGAFDYIETIELKPHARAYLLDHLATTEYRLSTGGSEK 335
Query: 153 IQLSALIAAFNSARDKLEVLELNA 176
IQL+AL+ AF E++EL A
Sbjct: 336 IQLTALLGAFK------EMVELQA 353
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 123/249 (49%), Gaps = 63/249 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD++VSH+DI TIE I ++ L L+ + GT + + A+
Sbjct: 39 VEKYRPVTLDDVVSHKDITCTIENFIQKNRLPHLL-------FYGPPGTGKTSTILAVAR 91
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ ++LELNASDDRGI +VR+QI QFA T+T+ YKLIILDEAD MT AQ
Sbjct: 92 RIYGDDFRKQILELNASDDRGIDVVREQIKQFAETRTLFSKGYKLIILDEADMMTQAAQA 151
Query: 221 ALRRKL-----------------PVTP--------------------------------- 230
ALRR + +TP
Sbjct: 152 ALRRVIEQYTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPIPEVERRVQTVVDAEGVQ 211
Query: 231 ---DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
DGKKA++ LS GDMR+ LN+LQ+ A+ DE+ E +YN G P ++I I+ +L
Sbjct: 212 LREDGKKALLKLSKGDMRRALNVLQACHAAY-DEIGETEIYNCTGNPHPSDIETIVNSML 270
Query: 288 NESMDLCYK 296
+ Y+
Sbjct: 271 ADEFTTSYQ 279
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K E+GLAL D+L + +E+ L+ ++ EYRL+ G SEKIQL+AL
Sbjct: 282 INALKTERGLALQDLLAGAFDYIETIELKPHARAYLLDHLATTEYRLSTGGSEKIQLTAL 341
Query: 516 IAAF 519
+ AF
Sbjct: 342 LGAF 345
>gi|409041157|gb|EKM50643.1| hypothetical protein PHACADRAFT_152803 [Phanerochaete carnosa
HHB-10118-sp]
Length = 358
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/149 (63%), Positives = 116/149 (77%), Gaps = 1/149 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI++N LPHLLFYGPPGTGKT+TILA AR++Y K + +LELNASDDRGI
Sbjct: 59 DITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGK-DYRKQILELNASDDRGI 117
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI FA T+T+ YKLIILDEAD MT AQ ALRR+IE++T NVRFCIICNY+
Sbjct: 118 DVVREQIKNFAETRTLFSKGYKLIILDEADMMTTAAQAALRRVIEQYTKNVRFCIICNYV 177
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
+KI PA+QSRCTRFRF PL + R++
Sbjct: 178 NKIIPAVQSRCTRFRFSPLPVPEVERRIN 206
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 112/192 (58%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY++KI PA+QSRCTRFRF PL + R++ VIE E V +T DG
Sbjct: 161 IEQYTKNVRFCIICNYVNKIIPAVQSRCTRFRFSPLPVPEVERRINGVIETEGVKITGDG 220
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
+KA++ LS GDMR+ LN+LQ+ A+ DE E ++
Sbjct: 221 RKALLKLSKGDMRRALNVLQACHAAY-DETGEREVYHCTGTPDPADIANIVNSMFSDEFT 279
Query: 99 ----LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
++S ++ R L +L++ + + +E+ + L+ + EYRL+AG SEKI
Sbjct: 280 TSYKMISSLKTDRGLALQDLLNGAYEYVDELELKPHARIYLLDYFATAEYRLSAGASEKI 339
Query: 154 QLSALIAAFNSA 165
QL+AL+ AF +A
Sbjct: 340 QLTALLGAFKNA 351
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 92/250 (36%), Positives = 123/250 (49%), Gaps = 63/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD++VSH+DI STIE I ++ L L+ + GT + + A+
Sbjct: 43 VEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLL-------FYGPPGTGKTSTILAVAR 95
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ ++LELNASDDRGI +VR+QI FA T+T+ YKLIILDEAD MT AQ
Sbjct: 96 RIYGKDYRKQILELNASDDRGIDVVREQIKNFAETRTLFSKGYKLIILDEADMMTTAAQA 155
Query: 221 ALRR-----------------------------------KLPV----------------- 228
ALRR LPV
Sbjct: 156 ALRRVIEQYTKNVRFCIICNYVNKIIPAVQSRCTRFRFSPLPVPEVERRINGVIETEGVK 215
Query: 229 -TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
T DG+KA++ LS GDMR+ LN+LQ+ A+ DE E VY+ G P +I NI+ +
Sbjct: 216 ITGDGRKALLKLSKGDMRRALNVLQACHAAY-DETGEREVYHCTGTPDPADIANIVNSMF 274
Query: 288 NESMDLCYKI 297
++ YK+
Sbjct: 275 SDEFTTSYKM 284
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I +K ++GLAL D+L V LE+ + L+ + EYRL+AG SEKIQL
Sbjct: 282 YKMISSLKTDRGLALQDLLNGAYEYVDELELKPHARIYLLDYFATAEYRLSAGASEKIQL 341
Query: 513 SALIAAFNSA 522
+AL+ AF +A
Sbjct: 342 TALLGAFKNA 351
>gi|225459599|ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [Vitis vinifera]
gi|302141794|emb|CBI18997.3| unnamed protein product [Vitis vinifera]
Length = 360
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 98/153 (64%), Positives = 119/153 (77%), Gaps = 4/153 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+R EN LPHLL YGPPGTGKT+TILA ARKLY + QF+ M+LELNASDDRGI
Sbjct: 56 DIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGE-QFHNMILELNASDDRGI 114
Query: 352 GIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
+VR QI FAST++ KSS KL++LDEADAMT DAQ ALRR+IEK+T N RF +IC
Sbjct: 115 DVVRQQIQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 174
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
N+++KI PA+QSRCTRFRF PLD+ + RL +
Sbjct: 175 NHVNKIIPALQSRCTRFRFAPLDAVHVTERLKH 207
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 111/189 (58%), Gaps = 28/189 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RF +ICN+++KI PA+QSRCTRFRF PLD+ + RL +VI EK++V+ G
Sbjct: 161 IEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAEKLDVSESG 220
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL--------------------- 99
A++ LS GDMRK LNILQS A + ++ E+ ++
Sbjct: 221 LAALVRLSSGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPLPKDIEQISYWLLNESFA 279
Query: 100 -----VSRVEKYRPSTLDELVSHQDI-ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+S V+ + L ++V + + I++P + V L+ ++DIEYRL+ G ++K+
Sbjct: 280 ASFDRISEVKMRKGLALVDVVREVTMFVFKIKMPSDVRVQLINDLADIEYRLSFGCNDKL 339
Query: 154 QLSALIAAF 162
QL +LIA+F
Sbjct: 340 QLGSLIASF 348
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 117/247 (47%), Gaps = 66/247 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +L ++ +H+DI+ TI+ E+ L L+L GT + + A+
Sbjct: 40 VEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGP-------PGTGKTSTILAVAR 92
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTND 217
+ +LELNASDDRGI +VR QI FAST++ KSS KL++LDEADAMT D
Sbjct: 93 KLYGEQFHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSSVKLVLLDEADAMTKD 152
Query: 218 AQNALRR----------------------------------------------------- 224
AQ ALRR
Sbjct: 153 AQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAE 212
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
KL V+ G A++ LS GDMRK LNILQS A + ++ E+ VY G P +I I
Sbjct: 213 KLDVSESGLAALVRLSSGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPLPKDIEQISY 271
Query: 285 WLLNESM 291
WLLNES
Sbjct: 272 WLLNESF 278
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 50/65 (76%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
+I E+K+ KGLAL D++ E+++ V ++++P + V L+ ++DIEYRL+ G ++K+QL +
Sbjct: 284 RISEVKMRKGLALVDVVREVTMFVFKIKMPSDVRVQLINDLADIEYRLSFGCNDKLQLGS 343
Query: 515 LIAAF 519
LIA+F
Sbjct: 344 LIASF 348
>gi|393240465|gb|EJD47991.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 348
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/134 (70%), Positives = 112/134 (83%), Gaps = 1/134 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I FI++N LPHLLFYGPPGTGKT+TILA AR++Y + +LELNASDDRGI +VR+
Sbjct: 54 IENFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGN-DYKRQILELNASDDRGIDVVRE 112
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI QFA T+T+ + S+KLIILDEAD MT AQ+ALRRIIE++T NVRFCIICNY++KI P
Sbjct: 113 QIKQFAETRTLFRRSFKLIILDEADMMTQAAQSALRRIIEQYTKNVRFCIICNYVNKIAP 172
Query: 417 AIQSRCTRFRFGPL 430
AIQSRCTRFRF PL
Sbjct: 173 AIQSRCTRFRFSPL 186
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 109/192 (56%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY++KI PAIQSRCTRFRF PL + R+ +VIE E V + PDG
Sbjct: 151 IEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIQDVERRVRHVIEAEDVKIEPDG 210
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL--------------------- 99
A++ LS GDMR+ LNILQ+ A+ D E I+
Sbjct: 211 LDALLKLSKGDMRRALNILQACHAAY-DRTTETEIYNCTGSPHPADIQAIVQSMMTEEFT 269
Query: 100 -----VSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+SR+ R L +L++ D + +IE+P V L+ ++D E+RL+ G SEK+
Sbjct: 270 TAYHNISRIRVERGLALQDLITGAYDYVESIELPPQARVYLLDHLADTEHRLSTGGSEKL 329
Query: 154 QLSALIAAFNSA 165
Q +AL+ AF A
Sbjct: 330 QFTALLGAFKIA 341
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 118/248 (47%), Gaps = 63/248 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L ++VSH I +TIE I ++ L L+ + GT + + A+
Sbjct: 33 VEKYRPVALSDVVSHDGITTTIENFIEKNRLPHLL-------FYGPPGTGKTSTILAVAR 85
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
K ++LELNASDDRGI +VR+QI QFA T+T+ + S+KLIILDEAD MT AQ+
Sbjct: 86 RIYGNDYKRQILELNASDDRGIDVVREQIKQFAETRTLFRRSFKLIILDEADMMTQAAQS 145
Query: 221 ALRR-----------------------------------KLPVT---------------- 229
ALRR LP+
Sbjct: 146 ALRRIIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIQDVERRVRHVIEAEDVK 205
Query: 230 --PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
PDG A++ LS GDMR+ LNILQ+ A+ D E +YN G P +I I++ ++
Sbjct: 206 IEPDGLDALLKLSKGDMRRALNILQACHAAY-DRTTETEIYNCTGSPHPADIQAIVQSMM 264
Query: 288 NESMDLCY 295
E Y
Sbjct: 265 TEEFTTAY 272
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I I++E+GLAL D++T V +E+P V L+ ++D E+RL+ G SEK+Q
Sbjct: 272 YHNISRIRVERGLALQDLITGAYDYVESIELPPQARVYLLDHLADTEHRLSTGGSEKLQF 331
Query: 513 SALIAAFNSA 522
+AL+ AF A
Sbjct: 332 TALLGAFKIA 341
>gi|353238813|emb|CCA70747.1| probable RFC3-DNA replication factor C, 40 kDa subunit
[Piriformospora indica DSM 11827]
Length = 346
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 96/148 (64%), Positives = 114/148 (77%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI +N LPHLLFYGPPGTGKT+TI+A AR+LY A + +LELNASDDRGI
Sbjct: 47 DITTTIEQFIQKNRLPHLLFYGPPGTGKTSTIIAVARRLYG-ANYKKQILELNASDDRGI 105
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRDQI FA T+ + +KLIILDEAD MT AQ ALRR+IE++T NVRFCIICNY+
Sbjct: 106 DVVRDQIKGFAETRGVFAKGFKLIILDEADMMTQAAQAALRRVIEQYTRNVRFCIICNYV 165
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+KI PAIQSRCTRFRF PL S + RL
Sbjct: 166 NKITPAIQSRCTRFRFSPLPVSEVEKRL 193
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 119/191 (62%), Gaps = 28/191 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY++KITPAIQSRCTRFRF PL S + RL VIE E V V+P+G
Sbjct: 149 IEQYTRNVRFCIICNYVNKITPAIQSRCTRFRFSPLPVSEVEKRLQTVIENEGVKVSPEG 208
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
K+A++ LS GDMR+ LN+LQ+ A+ D +E+ I+T
Sbjct: 209 KEALLKLSRGDMRRALNVLQACHAAY-DITDEEAIYTCTGNPHPKDIENVVNSMMSQEFG 267
Query: 99 ----LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+++ ++ R L +L+S D + +E+P V L+ +++ IE+RL+ G SEK+
Sbjct: 268 TCYHMINSLKTERGLALQDLISGAFDYVQELELPPHSRVYLLDQLATIEHRLSTGGSEKL 327
Query: 154 QLSALIAAFNS 164
QL+ALIAAF +
Sbjct: 328 QLTALIAAFKN 338
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 125/250 (50%), Gaps = 63/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD++VSH+DI +TIE I ++ L L+ + GT + + A+
Sbjct: 31 VEKYRPITLDDVVSHKDITTTIEQFIQKNRLPHLL-------FYGPPGTGKTSTIIAVAR 83
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
A K ++LELNASDDRGI +VRDQI FA T+ + +KLIILDEAD MT AQ
Sbjct: 84 RLYGANYKKQILELNASDDRGIDVVRDQIKGFAETRGVFAKGFKLIILDEADMMTQAAQA 143
Query: 221 ALRR-----------------------------------KLP------------------ 227
ALRR LP
Sbjct: 144 ALRRVIEQYTRNVRFCIICNYVNKITPAIQSRCTRFRFSPLPVSEVEKRLQTVIENEGVK 203
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
V+P+GK+A++ LS GDMR+ LN+LQ+ A+ D +E+ +Y G P +I N++ ++
Sbjct: 204 VSPEGKEALLKLSRGDMRRALNVLQACHAAY-DITDEEAIYTCTGNPHPKDIENVVNSMM 262
Query: 288 NESMDLCYKI 297
++ CY +
Sbjct: 263 SQEFGTCYHM 272
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I +K E+GLAL D+++ V LE+P V L+ +++ IE+RL+ G SEK+QL
Sbjct: 270 YHMINSLKTERGLALQDLISGAFDYVQELELPPHSRVYLLDQLATIEHRLSTGGSEKLQL 329
Query: 513 SALIAAFNS 521
+ALIAAF +
Sbjct: 330 TALIAAFKN 338
>gi|403415842|emb|CCM02542.1| predicted protein [Fibroporia radiculosa]
Length = 358
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/149 (63%), Positives = 116/149 (77%), Gaps = 1/149 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI++N+LPHLLFYGPPGTGKT+TILA AR++Y + +LELNASDDRGI
Sbjct: 58 DITSTIEKFIEKNQLPHLLFYGPPGTGKTSTILAVARRIYGN-DYRKQILELNASDDRGI 116
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI FA T+T+ YKLIILDEAD MT AQ ALRR+IE++T NVRFCIICNY+
Sbjct: 117 DVVREQIKNFAETRTLFLKGYKLIILDEADMMTTAAQAALRRVIEQYTKNVRFCIICNYV 176
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
+KI PAIQSRCTRFRF PL + RL+
Sbjct: 177 NKIIPAIQSRCTRFRFSPLPIPEVERRLN 205
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 112/192 (58%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY++KI PAIQSRCTRFRF PL + RL+ VIE E V +T DG
Sbjct: 160 IEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPIPEVERRLNSVIEAEGVKLTEDG 219
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
KKA++ LS GDMR+ LN+LQ A A D + E I+
Sbjct: 220 KKALLKLSKGDMRRALNVLQ-ACHAAFDLIGEAQIYDCTGSPHPSDIETVVNSMLSDDFT 278
Query: 99 ----LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
++S ++ R L +L++ + I TI+ + V ++ ++ E+RL+ G SEKI
Sbjct: 279 TSYKMISALKVERGLALPDLINGAYEYIETIDFKPHVRVYVLDFLATTEHRLSTGASEKI 338
Query: 154 QLSALIAAFNSA 165
QL+AL+ AF +A
Sbjct: 339 QLTALLGAFKNA 350
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 123/250 (49%), Gaps = 63/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP ++D++VSH+DI STIE I ++ L L+ + GT + + A+
Sbjct: 42 VEKYRPVSMDDIVSHKDITSTIEKFIEKNQLPHLL-------FYGPPGTGKTSTILAVAR 94
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ ++LELNASDDRGI +VR+QI FA T+T+ YKLIILDEAD MT AQ
Sbjct: 95 RIYGNDYRKQILELNASDDRGIDVVREQIKNFAETRTLFLKGYKLIILDEADMMTTAAQA 154
Query: 221 ALRR-----------------------------------KLPV----------------- 228
ALRR LP+
Sbjct: 155 ALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPIPEVERRLNSVIEAEGVK 214
Query: 229 -TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
T DGKKA++ LS GDMR+ LN+LQ A A D + E +Y+ G P ++I ++ +L
Sbjct: 215 LTEDGKKALLKLSKGDMRRALNVLQ-ACHAAFDLIGEAQIYDCTGSPHPSDIETVVNSML 273
Query: 288 NESMDLCYKI 297
++ YK+
Sbjct: 274 SDDFTTSYKM 283
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I +K+E+GLAL D++ + ++ + V ++ ++ E+RL+ G SEKIQL
Sbjct: 281 YKMISALKVERGLALPDLINGAYEYIETIDFKPHVRVYVLDFLATTEHRLSTGASEKIQL 340
Query: 513 SALIAAFNSA 522
+AL+ AF +A
Sbjct: 341 TALLGAFKNA 350
>gi|410075631|ref|XP_003955398.1| hypothetical protein KAFR_0A08290 [Kazachstania africana CBS 2517]
gi|372461980|emb|CCF56263.1| hypothetical protein KAFR_0A08290 [Kazachstania africana CBS 2517]
Length = 332
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 116/143 (81%), Gaps = 1/143 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +F++E +LPHLLFYGPPGTGKT+TI+A AR++Y K ++ MVLELNASDDRGI +VR+
Sbjct: 34 VRKFVEEGKLPHLLFYGPPGTGKTSTIIALAREIYGK-NYSNMVLELNASDDRGIDVVRN 92
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI +FAST+ + +KLIILDEADAMTN AQNALRRIIEK+T N RFCI+ NY K+ P
Sbjct: 93 QIKEFASTRQIFSKGFKLIILDEADAMTNAAQNALRRIIEKYTKNTRFCILANYAHKLTP 152
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
A+ SRCTRFRF PL S I +R+
Sbjct: 153 ALLSRCTRFRFQPLPSDAIETRI 175
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 117/252 (46%), Gaps = 66/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD++ ++I+ T+ + E L L+ + GT + + AL
Sbjct: 13 VEKYRPVTLDDVYGQKEIVGTVRKFVEEGKLPHLL-------FYGPPGTGKTSTIIALAR 65
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
VLELNASDDRGI +VR+QI +FAST+ + +KLIILDEADAMTN AQN
Sbjct: 66 EIYGKNYSNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTNAAQN 125
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR L
Sbjct: 126 ALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPSDAIETRIANVLVHENLK 185
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHAD----EVNEDTVYNSVGYPTKTEITNIL 283
+ K+A++DLS GDMR+VLN+LQ++ D E+ +D +Y VG P ++ +L
Sbjct: 186 LNDTAKRALLDLSKGDMRRVLNVLQASRATLDDPSNEEITDDIIYECVGAPRPEDLETVL 245
Query: 284 RWLLNESMDLCY 295
+ +L + Y
Sbjct: 246 KSILEDDWSTAY 257
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 108/197 (54%), Gaps = 32/197 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY K+TPA+ SRCTRFRF PL S I +R+ V+ E + +
Sbjct: 131 IEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPSDAIETRIANVLVHENLKLNDTA 190
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--Q 118
K+A++DLS GDMR+VLN+LQ++ D NE+ ++ V RP L+ ++ +
Sbjct: 191 KRALLDLSKGDMRRVLNVLQASRATLDDPSNEEITDDIIYECVGAPRPEDLETVLKSILE 250
Query: 119 DIIST----------------IEIPESML--------------VDLVLKMSDIEYRLAAG 148
D ST I++ E ++ ++L+ ++ DIEY ++ G
Sbjct: 251 DDWSTAYYTLTKVRTMKGLALIDLIEGIVKILEEYELKNEVTRIELLTRLGDIEYAISKG 310
Query: 149 TSEKIQLSALIAAFNSA 165
++KIQ SA+I A ++
Sbjct: 311 GNDKIQSSAVIGAIKTS 327
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIP-ESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
Y + +++ KGLAL D++ I ++ E+ E ++L+ ++ DIEY ++ G ++KIQ
Sbjct: 257 YYTLTKVRTMKGLALIDLIEGIVKILEEYELKNEVTRIELLTRLGDIEYAISKGGNDKIQ 316
Query: 512 LSALIAAFNSA 522
SA+I A ++
Sbjct: 317 SSAVIGAIKTS 327
>gi|395326617|gb|EJF59024.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 354
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 94/149 (63%), Positives = 117/149 (78%), Gaps = 1/149 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI++N LPHLLFYGPPGTGKT+TILA AR++Y ++ +LELNASDDRGI
Sbjct: 54 DITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIY-GTEYRKQILELNASDDRGI 112
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI FA T+T+ YKLIILDEAD MT AQ+ALRR+IE++T NVRFCIICNY+
Sbjct: 113 EVVREQIKNFAETRTLFSKGYKLIILDEADMMTTAAQSALRRVIEQYTKNVRFCIICNYV 172
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
+KI PAIQSRCTRFRF PL + R++
Sbjct: 173 NKIIPAIQSRCTRFRFSPLPIPEVEKRVN 201
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 116/204 (56%), Gaps = 32/204 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY++KI PAIQSRCTRFRF PL + R++ VI+ E V +T +G
Sbjct: 156 IEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPIPEVEKRVNNVIDAEGVKITAEG 215
Query: 61 KKAIIDLSDGDMRKVLNILQSA--------------ATAHADEVNEDTI--------FTL 98
K+A++ LS GDMR+ LN+LQ+ T + + +TI FT
Sbjct: 216 KQALLKLSKGDMRRALNVLQACHAAYELTGEAEIYNCTGNPQPADIETIVNSMLQDDFTT 275
Query: 99 ---LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
L+S ++ R L +L++ + I TI + L+ ++ E+RL+ G SEK+Q
Sbjct: 276 SYNLISALKIDRGLALPDLINGAYEYIETINFKPHARIYLLDFLATTEHRLSTGGSEKLQ 335
Query: 155 LSALIAAFNSARDKLEVLELNASD 178
+AL+ AF A +EL+A D
Sbjct: 336 FTALLGAFKHA------VELSAKD 353
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 120/250 (48%), Gaps = 63/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD++VSH DI STIE I ++ L L+ + GT + + A+
Sbjct: 38 VEKYRPVTLDDVVSHHDITSTIEKFIEKNRLPHLL-------FYGPPGTGKTSTILAVAR 90
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ ++LELNASDDRGI +VR+QI FA T+T+ YKLIILDEAD MT AQ+
Sbjct: 91 RIYGTEYRKQILELNASDDRGIEVVREQIKNFAETRTLFSKGYKLIILDEADMMTTAAQS 150
Query: 221 ALRR-----------------------------------KLP------------------ 227
ALRR LP
Sbjct: 151 ALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPIPEVEKRVNNVIDAEGVK 210
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+T +GK+A++ LS GDMR+ LN+LQ+ A+ + E +YN G P +I I+ +L
Sbjct: 211 ITAEGKQALLKLSKGDMRRALNVLQACHAAY-ELTGEAEIYNCTGNPQPADIETIVNSML 269
Query: 288 NESMDLCYKI 297
+ Y +
Sbjct: 270 QDDFTTSYNL 279
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488
P D I++ + DD + Y I +KI++GLAL D++ + +
Sbjct: 258 PADIETIVNSMLQDDFT-----TSYNLISALKIDRGLALPDLINGAYEYIETINFKPHAR 312
Query: 489 VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
+ L+ ++ E+RL+ G SEK+Q +AL+ AF A
Sbjct: 313 IYLLDFLATTEHRLSTGGSEKLQFTALLGAFKHA 346
>gi|325186526|emb|CCA21065.1| replication factor C subunit 5 putative [Albugo laibachii Nc14]
Length = 354
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 92/143 (64%), Positives = 117/143 (81%), Gaps = 1/143 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
IN+ +++ +LPHLLFYGPPGTGKT+ I+A ARK+Y K F++MVLELNASDDRGI +VR+
Sbjct: 56 INQLVEKQKLPHLLFYGPPGTGKTSMIIAIARKIYGK-HFSSMVLELNASDDRGIDVVRN 114
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI +FA TK + S KLIILDEAD+MTNDAQ +LRR+IEK+T + RFC+ICNY+SKI P
Sbjct: 115 QIKEFAGTKKLFSSGAKLIILDEADSMTNDAQFSLRRVIEKYTKHTRFCLICNYVSKIIP 174
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
A+QSRC RFRF PL + + R+
Sbjct: 175 ALQSRCMRFRFAPLGVTQVGDRV 197
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 120/242 (49%), Gaps = 59/242 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRPS +D++++H+ I+STI + LV+ K+ + + GT + + A+
Sbjct: 35 VEKYRPSRMDDIIAHKGIVSTI----NQLVE-KQKLPHLLFYGPPGTGKTSMIIAIARKI 89
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
VLELNASDDRGI +VR+QI +FA TK + S KLIILDEAD+MTNDAQ +L
Sbjct: 90 YGKHFSSMVLELNASDDRGIDVVRNQIKEFAGTKKLFSSGAKLIILDEADSMTNDAQFSL 149
Query: 223 RR-----------------------------------------------------KLPVT 229
RR K+ +T
Sbjct: 150 RRVIEKYTKHTRFCLICNYVSKIIPALQSRCMRFRFAPLGVTQVGDRVKQIRDLEKIDLT 209
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNE 289
G A++ L GDMR++LNILQ+A+ A+A VNE+ VY G P +I I L N+
Sbjct: 210 DGGFDALMQLGKGDMRRILNILQAASLAYA-TVNEENVYLCTGNPVPEDIAAICHSLWND 268
Query: 290 SM 291
S
Sbjct: 269 SF 270
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 110/196 (56%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T + RFC+ICNY+SKI PA+QSRC RFRF PL + + R+ + + EK+++T G
Sbjct: 153 IEKYTKHTRFCLICNYVSKIIPALQSRCMRFRFAPLGVTQVGDRVKQIRDLEKIDLTDGG 212
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------------------LV 100
A++ L GDMR++LNILQ+A+ A+A VNE+ ++
Sbjct: 213 FDALMQLGKGDMRRILNILQAASLAYA-TVNEENVYLCTGNPVPEDIAAICHSLWNDSFA 271
Query: 101 SRVEKYRPSTLDELVSHQDII-------STIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
V K + + + + DI+ + +++P + +++ +E+RLA G SEK+
Sbjct: 272 EAVSKCQAIQMTKGYATTDIMKEVYHNTTEVDLPAKCQHFIYDELAKLEHRLATGASEKL 331
Query: 154 QLSALIAAFNSARDKL 169
QL +L++ + AR L
Sbjct: 332 QLISLVSIYFMARGLL 347
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
K Q I++ KG A TDI+ E+ +++P + +++ +E+RLA G SEK+QL +
Sbjct: 276 KCQAIQMTKGYATTDIMKEVYHNTTEVDLPAKCQHFIYDELAKLEHRLATGASEKLQLIS 335
Query: 515 LIAAFNSARDKLEA 528
L++ + AR L +
Sbjct: 336 LVSIYFMARGLLAS 349
>gi|392565350|gb|EIW58527.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 353
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 94/149 (63%), Positives = 117/149 (78%), Gaps = 1/149 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI++N LPHLLFYGPPGTGKT+TILA AR++Y + +LELNASDDRGI
Sbjct: 53 DITSTIVKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGN-DYRKQILELNASDDRGI 111
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI FA T+T+ +KLIILDEAD MT AQ+ALRR+IE++T NVRFCIICNY+
Sbjct: 112 DVVREQIKNFAETRTLFAKGFKLIILDEADMMTTAAQSALRRVIEQYTKNVRFCIICNYV 171
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
+KI PAIQSRCTRFRF PL + + RL+
Sbjct: 172 NKIIPAIQSRCTRFRFSPLPITEVEKRLN 200
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 113/192 (58%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T NVRFCIICNY++KI PAIQSRCTRFRF PL + + RL+ VIE E V +T DG
Sbjct: 155 IEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPITEVEKRLNSVIEAEGVKLTEDG 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
KKA++ LS GDMR+ LN+LQ+ A+ D E I+
Sbjct: 215 KKALLKLSKGDMRRALNVLQACHAAY-DRSGEAEIYNCTGNPHPSDIETIVNSMLQDDFT 273
Query: 99 ----LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
L+S ++ R L +L++ + + TI+ + + L+ ++ E+RL+ G +EKI
Sbjct: 274 TSYNLISALKTERGLALPDLINGAYEYLQTIQFKPNARIYLLDFLATTEHRLSTGGNEKI 333
Query: 154 QLSALIAAFNSA 165
QL+AL+ AF +A
Sbjct: 334 QLTALLGAFKNA 345
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 119/250 (47%), Gaps = 63/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLK--MSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD++VSH DI STI V + K + + + GT + + A+
Sbjct: 37 VEKYRPVTLDDVVSHHDITSTI-------VKFIEKNRLPHLLFYGPPGTGKTSTILAVAR 89
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ ++LELNASDDRGI +VR+QI FA T+T+ +KLIILDEAD MT AQ+
Sbjct: 90 RIYGNDYRKQILELNASDDRGIDVVREQIKNFAETRTLFAKGFKLIILDEADMMTTAAQS 149
Query: 221 ALRR-----------------------------------KLPV----------------- 228
ALRR LP+
Sbjct: 150 ALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPITEVEKRLNSVIEAEGVK 209
Query: 229 -TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
T DGKKA++ LS GDMR+ LN+LQ+ A+ D E +YN G P ++I I+ +L
Sbjct: 210 LTEDGKKALLKLSKGDMRRALNVLQACHAAY-DRSGEAEIYNCTGNPHPSDIETIVNSML 268
Query: 288 NESMDLCYKI 297
+ Y +
Sbjct: 269 QDDFTTSYNL 278
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488
P D I++ + DD + Y I +K E+GLAL D++ + ++ +
Sbjct: 257 PSDIETIVNSMLQDDFT-----TSYNLISALKTERGLALPDLINGAYEYLQTIQFKPNAR 311
Query: 489 VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
+ L+ ++ E+RL+ G +EKIQL+AL+ AF +A
Sbjct: 312 IYLLDFLATTEHRLSTGGNEKIQLTALLGAFKNA 345
>gi|356509405|ref|XP_003523440.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 363
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 96/153 (62%), Positives = 119/153 (77%), Gaps = 4/153 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+R EN LPHLL YGPPGTGKT+TILA ARKLY +Q+ M+LELNASDDRGI
Sbjct: 59 DIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLY-GSQYQNMILELNASDDRGI 117
Query: 352 GIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
+VR QI FAST+++ KSS KL++LDEADAMT DAQ ALRR+IEK+T + RF +IC
Sbjct: 118 DVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIC 177
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
N+++KI PA+QSRCTRFRF PLD+ + RL +
Sbjct: 178 NHVNKIIPALQSRCTRFRFAPLDAVHVTERLKH 210
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 120/196 (61%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T + RF +ICN+++KI PA+QSRCTRFRF PLD+ + RL +VI+ E ++V G
Sbjct: 164 IEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSG 223
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRV-------------EKYR 107
A++ LS+GDMRK LNILQS A + ++ E+T++ + + E++
Sbjct: 224 LAALVRLSNGDMRKALNILQSTHMA-SQQITEETVYLCTGNPLPKDIEQISYWLLNEQFA 282
Query: 108 PS--TLDELVSHQDI------------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
S +DE+ + + + + I++P ++ V L+ ++DIEYRL+ G ++K+
Sbjct: 283 DSFKRIDEMKTRKGLALVDIVREVTLFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKL 342
Query: 154 QLSALIAAFNSARDKL 169
QL ++IA+F+ AR L
Sbjct: 343 QLGSVIASFSRARSAL 358
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 122/252 (48%), Gaps = 66/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +LD++ +H+DI+ TI+ E+ L L+L GT + + A+
Sbjct: 43 VEKYRPLSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGP-------PGTGKTSTILAVAR 95
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTND 217
++ + +LELNASDDRGI +VR QI FAST+++ KSS KL++LDEADAMT D
Sbjct: 96 KLYGSQYQNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKD 155
Query: 218 AQNALRR--------------------------------------KLPVTPDGKKAI--- 236
AQ ALRR + VT K I
Sbjct: 156 AQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAE 215
Query: 237 -IDLSD-----------GDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
+D+ D GDMRK LNILQS A + ++ E+TVY G P +I I
Sbjct: 216 GLDVEDSGLAALVRLSNGDMRKALNILQSTHMA-SQQITEETVYLCTGNPLPKDIEQISY 274
Query: 285 WLLNESMDLCYK 296
WLLNE +K
Sbjct: 275 WLLNEQFADSFK 286
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 56/76 (73%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
+ +I E+K KGLAL DI+ E++L V ++++P ++ V L+ ++DIEYRL+ G ++K+QL
Sbjct: 285 FKRIDEMKTRKGLALVDIVREVTLFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQL 344
Query: 513 SALIAAFNSARDKLEA 528
++IA+F+ AR L A
Sbjct: 345 GSVIASFSRARSALVA 360
>gi|367014065|ref|XP_003681532.1| hypothetical protein TDEL_0E00780 [Torulaspora delbrueckii]
gi|359749193|emb|CCE92321.1| hypothetical protein TDEL_0E00780 [Torulaspora delbrueckii]
Length = 336
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/144 (63%), Positives = 115/144 (79%), Gaps = 1/144 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ RFI+E +LPHLLFYGPPGTGKT+T++A AR++Y K ++ MVLELNASDDRGI +VR+
Sbjct: 35 VRRFIEEGQLPHLLFYGPPGTGKTSTVVALAREIYGK-NYSNMVLELNASDDRGIDVVRN 93
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+ + +KLIILDEADAMTN AQNALRRIIEK+T N RFCI+ NY K+ P
Sbjct: 94 QIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRIIEKYTKNTRFCILANYAHKLTP 153
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLD 440
A+ SRCTRFRF PL + + R++
Sbjct: 154 ALLSRCTRFRFQPLPTEALERRMN 177
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 121/268 (45%), Gaps = 67/268 (25%)
Query: 92 EDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGT 149
ED + VEKYRP+TLD++ +++ T+ I E L L+ + GT
Sbjct: 3 EDVALNDGLPWVEKYRPATLDDVYGQNEVVGTVRRFIEEGQLPHLL-------FYGPPGT 55
Query: 150 SEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILD 209
+ + AL VLELNASDDRGI +VR+QI FAST+ + +KLIILD
Sbjct: 56 GKTSTVVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILD 115
Query: 210 EADAMTNDAQNALRR--------------------------------------------- 224
EADAMTN AQNALRR
Sbjct: 116 EADAMTNAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPTEALERR 175
Query: 225 --------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTVYNSVG 272
L +T K+A++ LS GDMR+VLN+LQ+ +E+ +DT+Y+ G
Sbjct: 176 MNKVLSNEHLKMTTSAKEALLKLSRGDMRRVLNVLQACKATLDKPLEEEITDDTIYDCCG 235
Query: 273 YPTKTEITNILRWLLNESMDLC-YKINR 299
P ++ IL +L + Y +NR
Sbjct: 236 APRPADLETILESILKDDWTTAYYTLNR 263
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 108/197 (54%), Gaps = 32/197 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY K+TPA+ SRCTRFRF PL + + R++ V+ E + +T
Sbjct: 132 IEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPTEALERRMNKVLSNEHLKMTTSA 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTIF------------TLLVS--- 101
K+A++ LS GDMR+VLN+LQ+ +E+ +DTI+ T+L S
Sbjct: 192 KEALLKLSRGDMRRVLNVLQACKATLDKPLEEEITDDTIYDCCGAPRPADLETILESILK 251
Query: 102 -----------RVEKYRPSTLDELV-SHQDIISTIEI-PESMLVDLVLKMSDIEYRLAAG 148
RV + L +L+ DI+ + E+ + + ++ ++SDIEY ++ G
Sbjct: 252 DDWTTAYYTLNRVRGAKGLALIDLIEGFVDILESYELKSQEARISMLTQLSDIEYAISRG 311
Query: 149 TSEKIQLSALIAAFNSA 165
+++IQ SA+I +
Sbjct: 312 GNDRIQGSAVIGVIKNG 328
>gi|30913228|sp|O74111.1|RFC3_ARXAD RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3; AltName: Full=Activator 1 subunit 3
gi|3367626|emb|CAA07618.1| replication factor C subunit [Blastobotrys adeninivorans]
Length = 338
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 91/145 (62%), Positives = 114/145 (78%), Gaps = 1/145 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I +F++E +LPHLLF+GPPGTGKTTTI+A AR++Y K + M+LELNASD+RGI +VRD
Sbjct: 41 IKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIYGK-NYRNMILELNASDERGIDVVRD 99
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+ + S +KL+ILDEADAMTN AQNALRRIIEK++ + RFCI+ NY K+ P
Sbjct: 100 QIKTFASTRQIFSSGFKLVILDEADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNP 159
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
A+ SRCTRFRF PL I RL +
Sbjct: 160 ALLSRCTRFRFSPLKEDAIKHRLAH 184
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 130/260 (50%), Gaps = 64/260 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+TLDE+ H+ +I+TI+ + E L L+ + GT + + A+
Sbjct: 20 VEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLL-------FHGPPGTGKTTTIIAVAR 72
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ +LELNASD+RGI +VRDQI FAST+ + S +KL+ILDEADAMTN AQN
Sbjct: 73 QIYGKNYRNMILELNASDERGIDVVRDQIKTFASTRQIFSSGFKLVILDEADAMTNAAQN 132
Query: 221 ALRR-------------------KL--------------PVTPDGKK------------- 234
ALRR KL P+ D K
Sbjct: 133 ALRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRLAHVIEQESVD 192
Query: 235 -------AIIDLSDGDMRKVLNILQS--AATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
+++ LS GDMR+ LN+LQ+ A+ ++++E+ VY+ VG P +I +L+
Sbjct: 193 LSPEAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVYDCVGSPRPADIRTVLQA 252
Query: 286 LLNESMDLCYKINRFIDENE 305
+L+ S + +I +++
Sbjct: 253 VLDGSWESALHTFSYIKQSK 272
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 111/206 (53%), Gaps = 35/206 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK++ + RFCI+ NY K+ PA+ SRCTRFRF PL I RL +VIEQE V+++P+
Sbjct: 138 IEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRLAHVIEQESVDLSPEA 197
Query: 61 KKAIIDLSDGDMRKVLNILQS--AATAHADEVNEDTIF------------TLLVSRVEKY 106
++++ LS GDMR+ LN+LQ+ A+ ++++E+ ++ T+L + ++
Sbjct: 198 FQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVYDCVGSPRPADIRTVLQAVLDGS 257
Query: 107 RPSTL---------------DELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE 151
S L D L + +++ + L+ +S+IE+RL++G +E
Sbjct: 258 WESALHTFSYIKQSKGLALADMLTAFAVEFQKLDLQNKTRIALLDGLSEIEWRLSSGGNE 317
Query: 152 KIQLSALIAAFNSARDKLEVLELNAS 177
IQ SA I + +EL AS
Sbjct: 318 SIQTSATIGVIKQS------MELEAS 337
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 459 IKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 518
IK KGLAL D+LT ++ +L++ + L+ +S+IE+RL++G +E IQ SA I
Sbjct: 268 IKQSKGLALADMLTAFAVEFQKLDLQNKTRIALLDGLSEIEWRLSSGGNESIQTSATIGV 327
Query: 519 FNSARDKLEA 528
+ + LEA
Sbjct: 328 IKQSME-LEA 336
>gi|224066809|ref|XP_002302226.1| predicted protein [Populus trichocarpa]
gi|222843952|gb|EEE81499.1| predicted protein [Populus trichocarpa]
Length = 363
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 97/153 (63%), Positives = 118/153 (77%), Gaps = 4/153 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+R EN LPHLL YGPPGTGKT+TILA ARKLY AQ++ M+LELNASDDRGI
Sbjct: 59 DIIDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-AQYHNMILELNASDDRGI 117
Query: 352 GIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
+VR QI FAST++ K+S KL++LDEADAMT DAQ ALRR+IEK+T N RF +IC
Sbjct: 118 DVVRKQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 177
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
N+++KI PA+QSRCTRFRF PLD + RL +
Sbjct: 178 NHVNKIIPALQSRCTRFRFAPLDPMHVGERLKH 210
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 113/196 (57%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RF +ICN+++KI PA+QSRCTRFRF PLD + RL +VIE E ++V G
Sbjct: 164 IEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPMHVGERLKHVIEAEGLDVPESG 223
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL----LVSRVEKYRPSTLDELVS 116
+A+ LS+GDMRK LNILQS A + ++ E+T++ L V++ L+E +
Sbjct: 224 LEALKCLSNGDMRKALNILQSTHMA-SQQITEETVYLCTGNPLPQDVQQITHWLLNESFA 282
Query: 117 HQ----------------DIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI+ I++ + V L+ ++DIEYRL+ G ++K+
Sbjct: 283 ESYKRISEIKTRKGLALVDIVREVTMFVFKIKMQSDIRVPLINDLADIEYRLSFGCNDKL 342
Query: 154 QLSALIAAFNSARDKL 169
QL +LIA+F AR L
Sbjct: 343 QLGSLIASFTRARSAL 358
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 122/252 (48%), Gaps = 66/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +L ++ +H+DII TI+ E+ L L+L GT + + A+
Sbjct: 43 VEKYRPQSLADVAAHRDIIDTIDRLTSENRLPHLLLYGP-------PGTGKTSTILAVAR 95
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTND 217
A+ +LELNASDDRGI +VR QI FAST++ K+S KL++LDEADAMT D
Sbjct: 96 KLYGAQYHNMILELNASDDRGIDVVRKQIQDFASTQSFSFGAKASVKLVLLDEADAMTKD 155
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQ ALRR + P+ P
Sbjct: 156 AQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPMHVGERLKHVIEAE 215
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
G +A+ LS+GDMRK LNILQS A + ++ E+TVY G P ++ I
Sbjct: 216 GLDVPESGLEALKCLSNGDMRKALNILQSTHMA-SQQITEETVYLCTGNPLPQDVQQITH 274
Query: 285 WLLNESMDLCYK 296
WLLNES YK
Sbjct: 275 WLLNESFAESYK 286
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 53/76 (69%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y +I EIK KGLAL DI+ E+++ V ++++ + V L+ ++DIEYRL+ G ++K+QL
Sbjct: 285 YKRISEIKTRKGLALVDIVREVTMFVFKIKMQSDIRVPLINDLADIEYRLSFGCNDKLQL 344
Query: 513 SALIAAFNSARDKLEA 528
+LIA+F AR L A
Sbjct: 345 GSLIASFTRARSALVA 360
>gi|255558636|ref|XP_002520343.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540562|gb|EEF42129.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 360
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 96/153 (62%), Positives = 118/153 (77%), Gaps = 4/153 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+R +EN LPHLL YGPPGTGKT+TILA ARKLY Q++ M+LELNASDDRGI
Sbjct: 56 DIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYG-VQYHNMILELNASDDRGI 114
Query: 352 GIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
+VR QI FAST++ KS+ KL++LDEADAMT DAQ ALRR+IEK+T N RF +IC
Sbjct: 115 DVVRQQIQDFASTQSFSFDAKSAVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 174
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
N+++KI PA+QSRCTRFRF PLD + RL +
Sbjct: 175 NHVNKIIPALQSRCTRFRFAPLDPIHVTDRLKH 207
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 115/196 (58%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RF +ICN+++KI PA+QSRCTRFRF PLD + RL +VIE E ++V G
Sbjct: 161 IEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPIHVTDRLKHVIEAEGLDVPEPG 220
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI----------------FTLL----- 99
A++ LS+GDMRK LNILQS A + ++ E+ + + LL
Sbjct: 221 LAAVVRLSNGDMRKALNILQSTHMA-SQQITEEAVHLCTGNPLPKDIQQISYWLLNESFA 279
Query: 100 -----VSRVEKYRPSTLDELVSHQDI-ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+S ++ + L ++V + + I++P + V L+ M+DIEYRL+ G S+K+
Sbjct: 280 ESFKRISEIKTKKGLALVDIVREVTMFVFKIKMPSDVRVQLINDMADIEYRLSFGCSDKL 339
Query: 154 QLSALIAAFNSARDKL 169
QL +L+A+F AR L
Sbjct: 340 QLGSLVASFTWARSAL 355
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 120/252 (47%), Gaps = 66/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +L ++ +H+DI+ TI+ E+ L L+L GT + + A+
Sbjct: 40 VEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGP-------PGTGKTSTILAVAR 92
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTND 217
+ +LELNASDDRGI +VR QI FAST++ KS+ KL++LDEADAMT D
Sbjct: 93 KLYGVQYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFDAKSAVKLVLLDEADAMTKD 152
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQ ALRR + P+ P
Sbjct: 153 AQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPIHVTDRLKHVIEAE 212
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
G A++ LS+GDMRK LNILQS A + ++ E+ V+ G P +I I
Sbjct: 213 GLDVPEPGLAAVVRLSNGDMRKALNILQSTHMA-SQQITEEAVHLCTGNPLPKDIQQISY 271
Query: 285 WLLNESMDLCYK 296
WLLNES +K
Sbjct: 272 WLLNESFAESFK 283
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 55/76 (72%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
+ +I EIK +KGLAL DI+ E+++ V ++++P + V L+ M+DIEYRL+ G S+K+QL
Sbjct: 282 FKRISEIKTKKGLALVDIVREVTMFVFKIKMPSDVRVQLINDMADIEYRLSFGCSDKLQL 341
Query: 513 SALIAAFNSARDKLEA 528
+L+A+F AR L A
Sbjct: 342 GSLVASFTWARSALVA 357
>gi|224009073|ref|XP_002293495.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana
CCMP1335]
gi|220970895|gb|EED89231.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 116/149 (77%), Gaps = 1/149 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLY-TKAQFNAMVLELNASDDRG 350
D+ + R ID + LPHLL YGPPGTGKT+TI+A A+++Y + A +++M LELNASD RG
Sbjct: 20 DIVAILTRLIDSDNLPHLLLYGPPGTGKTSTIVAAAKRMYGSTAAYSSMALELNASDSRG 79
Query: 351 IGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
I +VR++I +FA T+ + S KLIILDEADAMT+DAQ ALRR+IEK T N RFC+ICNY
Sbjct: 80 IDVVRNEIKEFAGTRQLFHSGIKLIILDEADAMTSDAQFALRRVIEKHTKNARFCLICNY 139
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+SKI PA+QSRCTRFRF PL I SRL
Sbjct: 140 VSKIIPALQSRCTRFRFAPLKQEQIRSRL 168
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 105/197 (53%), Gaps = 26/197 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK T N RFC+ICNY+SKI PA+QSRCTRFRF PL I SRL V + EK N T DG
Sbjct: 124 IEKHTKNARFCLICNYVSKIIPALQSRCTRFRFAPLKQEQIRSRLVEVADAEKCNYTEDG 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH--ADEVNE------------------------DT 94
+AI+DLS GDMR+VLN+LQS A DE N
Sbjct: 184 IQAILDLSGGDMRRVLNLLQSTAMGSEIVDEKNVYMTSGAPLPRDVHVAMEWLMNLEFKD 243
Query: 95 IFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
++ L + + D L + ++ P +L L+ MSD+E+RLA GT EK+Q
Sbjct: 244 VYEKLTNMCSTKGYALTDILTELANKVTEANFPPGVLAVLLDGMSDVEHRLAFGTDEKLQ 303
Query: 155 LSALIAAFNSARDKLEV 171
++L+ F R +++
Sbjct: 304 AASLVGVFVKGRHVMKI 320
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 122/244 (50%), Gaps = 67/244 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP+ L++LV+H+DI++ + + L+D ++ + L G + S ++AA
Sbjct: 4 VEKYRPAKLEDLVAHEDIVAIL----TRLID----SDNLPHLLLYGPPGTGKTSTIVAAA 55
Query: 163 -----NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
++A LELNASD RGI +VR++I +FA T+ + S KLIILDEADAMT+D
Sbjct: 56 KRMYGSTAAYSSMALELNASDSRGIDVVRNEIKEFAGTRQLFHSGIKLIILDEADAMTSD 115
Query: 218 AQNALRR----------------------------------------------------- 224
AQ ALRR
Sbjct: 116 AQFALRRVIEKHTKNARFCLICNYVSKIIPALQSRCTRFRFAPLKQEQIRSRLVEVADAE 175
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
K T DG +AI+DLS GDMR+VLN+LQS A ++ V+E VY + G P ++ +
Sbjct: 176 KCNYTEDGIQAILDLSGGDMRRVLNLLQSTAMG-SEIVDEKNVYMTSGAPLPRDVHVAME 234
Query: 285 WLLN 288
WL+N
Sbjct: 235 WLMN 238
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y K+ + KG ALTDILTE++ V P +L L+ MSD+E+RLA GT EK+Q
Sbjct: 245 YEKLTNMCSTKGYALTDILTELANKVTEANFPPGVLAVLLDGMSDVEHRLAFGTDEKLQA 304
Query: 513 SALIAAFNSAR 523
++L+ F R
Sbjct: 305 ASLVGVFVKGR 315
>gi|71662047|ref|XP_818036.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
Brener]
gi|70883263|gb|EAN96185.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/192 (52%), Positives = 131/192 (68%), Gaps = 22/192 (11%)
Query: 269 NSVGYPTKTEITNILRWL-------LNESM---DLCYKINRFIDENELPHLLFYGPPGTG 318
NS G+ K+ + L W+ L+E + D+ R +D LPHLLFYGPPGTG
Sbjct: 7 NSTGHAAKS---STLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTG 63
Query: 319 KTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------- 371
KTTTI ACA L+ K + A VLE+NASDDRGI +VR Q+ +FAST + + +S
Sbjct: 64 KTTTIKACAYYLFGKDRIRANVLEMNASDDRGIDVVRQQVREFASTSSFYFASAPAAPTI 123
Query: 372 --YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGP 429
+KL+ILDEAD M+ DAQ ALRRIIEK+T NVRFCI+CN+++KI PA+QSRCTRFRF P
Sbjct: 124 AAFKLVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAP 183
Query: 430 LDSSLIMSRLDY 441
+ S ++SRL +
Sbjct: 184 VKKSAMLSRLKF 195
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 112/196 (57%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCI+CN+++KI PA+QSRCTRFRF P+ S ++SRL +V ++E V T +G
Sbjct: 149 IEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMLSRLKFVAQEEGVRFTDEG 208
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------------------LV 100
A LS+GD+R+ LN LQ++A + A E+ E++++ +
Sbjct: 209 LVAAFRLSNGDLRRCLNTLQASAMS-AGEITEESVYRVTGNPTPADVRGIVEDMIAHDFA 267
Query: 101 SRVEKYRPSTLDELVSHQD-------IISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ EK + ++ VS D I+ +++P+ L++K++D+EY A G E
Sbjct: 268 ASWEKVHQTVSEKGVSSTDLVREVHHIVMAMDLPQESKCFLLMKLADVEYYAAGGAKETT 327
Query: 154 QLSALIAAFNSARDKL 169
+S ++ AF ++ L
Sbjct: 328 CISGILGAFQLVKEAL 343
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 117/244 (47%), Gaps = 69/244 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TLDE+V+H+DI+ST L+D + + + GT + + A
Sbjct: 21 VEKYRPVTLDEVVAHEDILSTTR----RLMD-SGNLPHLLFYGPPGTGKTTTIKACAYYL 75
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------YKLIILDEAD 212
F R + VLE+NASDDRGI +VR Q+ +FAST + + +S +KL+ILDEAD
Sbjct: 76 FGKDRIRANVLEMNASDDRGIDVVRQQVREFASTSSFYFASAPAAPTIAAFKLVILDEAD 135
Query: 213 AMTNDAQNALRRKL---------------------------------PV----------- 228
M+ DAQ ALRR + PV
Sbjct: 136 QMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMLSRLKF 195
Query: 229 ---------TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEI 279
T +G A LS+GD+R+ LN LQ++A + A E+ E++VY G PT ++
Sbjct: 196 VAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTLQASAMS-AGEITEESVYRVTGNPTPADV 254
Query: 280 TNIL 283
I+
Sbjct: 255 RGIV 258
>gi|407847432|gb|EKG03143.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/192 (52%), Positives = 131/192 (68%), Gaps = 22/192 (11%)
Query: 269 NSVGYPTKTEITNILRWL-------LNESM---DLCYKINRFIDENELPHLLFYGPPGTG 318
NS G+ K+ + L W+ L+E + D+ R +D LPHLLFYGPPGTG
Sbjct: 7 NSTGHAAKS---STLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTG 63
Query: 319 KTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------- 371
KTTTI ACA L+ K + A VLE+NASDDRGI +VR Q+ +FAST + + +S
Sbjct: 64 KTTTIKACAYYLFGKDRIRANVLEMNASDDRGIDVVRQQVREFASTSSFYFASTPAAPTI 123
Query: 372 --YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGP 429
+KL+ILDEAD M+ DAQ ALRRIIEK+T NVRFCI+CN+++KI PA+QSRCTRFRF P
Sbjct: 124 AAFKLVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAP 183
Query: 430 LDSSLIMSRLDY 441
+ S ++SRL +
Sbjct: 184 VKKSAMLSRLKF 195
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 111/196 (56%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCI+CN+++KI PA+QSRCTRFRF P+ S ++SRL +V ++E V T +G
Sbjct: 149 IEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMLSRLKFVAQEEGVRFTDEG 208
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------------------LV 100
A LS+GD+R+ LN LQ++A + A E+ E++++ +
Sbjct: 209 LVAAFRLSNGDLRRCLNTLQASAMS-AGEITEESVYRVTGNPTPADVRGIVEDMIAHDFA 267
Query: 101 SRVEKYRPSTLDELVSHQD-------IISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ EK ++ VS D I+ +++P+ L++K++D+EY A G E
Sbjct: 268 ASWEKVHQIVSEKGVSSTDLVREVHHIVMAMDLPQESKCFLLMKLADVEYYAAGGAKETT 327
Query: 154 QLSALIAAFNSARDKL 169
+S ++ AF ++ L
Sbjct: 328 CISGILGAFQLVKEAL 343
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 126/265 (47%), Gaps = 70/265 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TLDE+V+H+DI+ST L+D + + + GT + + A
Sbjct: 21 VEKYRPVTLDEVVAHEDILSTTR----RLMD-SGNLPHLLFYGPPGTGKTTTIKACAYYL 75
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------YKLIILDEAD 212
F R + VLE+NASDDRGI +VR Q+ +FAST + + +S +KL+ILDEAD
Sbjct: 76 FGKDRIRANVLEMNASDDRGIDVVRQQVREFASTSSFYFASTPAAPTIAAFKLVILDEAD 135
Query: 213 AMTNDAQNALRRKL---------------------------------PV----------- 228
M+ DAQ ALRR + PV
Sbjct: 136 QMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMLSRLKF 195
Query: 229 ---------TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEI 279
T +G A LS+GD+R+ LN LQ++A + A E+ E++VY G PT ++
Sbjct: 196 VAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTLQASAMS-AGEITEESVYRVTGNPTPADV 254
Query: 280 TNILRWLLNESMDLCY-KINRFIDE 303
I+ ++ + K+++ + E
Sbjct: 255 RGIVEDMIAHDFAASWEKVHQIVSE 279
>gi|452824858|gb|EME31858.1| replication factor C subunit [Galdieria sulphuraria]
Length = 330
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/148 (63%), Positives = 115/148 (77%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RF++ N LPH+LFYGPPGTGKT+TILACA +Y F +MVLELNASDDRGI
Sbjct: 27 DIIVTILRFVNSNSLPHMLFYGPPGTGKTSTILACAEHMY-GTNFKSMVLELNASDDRGI 85
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR++I F ST+ + + KL+ILDEADAMT+ AQ ALRRI+EK+TT+ RFC+ICNY
Sbjct: 86 DVVRNEIKDFCSTQRIFATGVKLVILDEADAMTSAAQMALRRIMEKYTTSTRFCLICNYA 145
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+KI PA+QSRCTRFRFGPL I RL
Sbjct: 146 NKIIPALQSRCTRFRFGPLKEEDIRLRL 173
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 104/200 (52%), Gaps = 28/200 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+TT+ RFC+ICNY +KI PA+QSRCTRFRFGPL I RL + E+E V D
Sbjct: 129 MEKYTTSTRFCLICNYANKIIPALQSRCTRFRFGPLKEEDIRLRLGQIAEREGVVFEKDA 188
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------------DEVNEDTIFT 97
+ II LS GDMR +NILQS + D +NE+ F+
Sbjct: 189 LETIIQLSQGDMRSCINILQSTFLSSGKVTCSTVYENTGNPSNEEMEQIMDWLNEEDDFS 248
Query: 98 LLVSRVEKYRP----STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+V+K + + +D L + T + L+ K++DIE++ A G SE +
Sbjct: 249 SCYDKVKKMKAERGFALIDILRQIHKRLLTRNMSRRAKAYLLEKLADIEHQFAFGGSELL 308
Query: 154 QLSALIAAFNSARDKLEVLE 173
L +LI +F + LEVL+
Sbjct: 309 NLCSLIGSFQIMK-TLEVLD 327
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 108/255 (42%), Gaps = 76/255 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
+EKYRP T ++++S QDII TI +P + GT + +
Sbjct: 11 LEKYRPKTFNDVLSQQDIIVTILRFVNSNSLPHMLFYG------------PPGTGKTSTI 58
Query: 156 SALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMT 215
A K VLELNASDDRGI +VR++I F ST+ + + KL+ILDEADAMT
Sbjct: 59 LACAEHMYGTNFKSMVLELNASDDRGIDVVRNEIKDFCSTQRIFATGVKLVILDEADAMT 118
Query: 216 NDAQNAL----------------------------------------------------- 222
+ AQ AL
Sbjct: 119 SAAQMALRRIMEKYTTSTRFCLICNYANKIIPALQSRCTRFRFGPLKEEDIRLRLGQIAE 178
Query: 223 RRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNI 282
R + D + II LS GDMR +NILQS + + +V TVY + G P+ E+ I
Sbjct: 179 REGVVFEKDALETIIQLSQGDMRSCINILQSTFLS-SGKVTCSTVYENTGNPSNEEMEQI 237
Query: 283 LRWLLNESMDL--CY 295
+ W LNE D CY
Sbjct: 238 MDW-LNEEDDFSSCY 251
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y K++++K E+G AL DIL +I + + L+ K++DIE++ A G SE + L
Sbjct: 251 YDKVKKMKAERGFALIDILRQIHKRLLTRNMSRRAKAYLLEKLADIEHQFAFGGSELLNL 310
Query: 513 SALIAAFNSAR--DKLEAPP 530
+LI +F + + L+A P
Sbjct: 311 CSLIGSFQIMKTLEVLDAAP 330
>gi|356515902|ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 361
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/153 (62%), Positives = 119/153 (77%), Gaps = 4/153 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+R EN LPHLL YGPPGTGKT+TILA ARKLY +Q+ M+LELNASDDRGI
Sbjct: 57 DIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLY-GSQYQNMILELNASDDRGI 115
Query: 352 GIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
+VR QI FAST+++ KSS KL++LDEADAMT DAQ ALRR+IEK+T + RF +IC
Sbjct: 116 DVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIC 175
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
N+++KI PA+QSRCTRFRF PLD+ + RL +
Sbjct: 176 NHVNKIIPALQSRCTRFRFAPLDAVHVTERLKH 208
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 118/196 (60%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T + RF +ICN+++KI PA+QSRCTRFRF PLD+ + RL +VI+ E ++V G
Sbjct: 162 IEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSG 221
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL----------LVSRV---EKYR 107
A + LS+GDMRK LNILQS A + ++ E+ ++ L+S E++
Sbjct: 222 LAAFVRLSNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPLPKDIELISYWLLNEQFA 280
Query: 108 PS--TLDELVSHQDI------------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
S +DE+ + + + + I++P ++ V L+ ++DIEYRL+ G ++K+
Sbjct: 281 DSFKRIDEMKTRKGLALIDIVREVTMFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKL 340
Query: 154 QLSALIAAFNSARDKL 169
QL ++IA+F AR L
Sbjct: 341 QLGSVIASFTRARSAL 356
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 119/252 (47%), Gaps = 66/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +LD++ +H+DI+ TI+ E+ L L+L GT + + A+
Sbjct: 41 VEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGP-------PGTGKTSTILAVAR 93
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTND 217
++ + +LELNASDDRGI +VR QI FAST+++ KSS KL++LDEADAMT D
Sbjct: 94 KLYGSQYQNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKD 153
Query: 218 AQNALRR--------------------------------------KLPVTPDGKKAI--- 236
AQ ALRR + VT K I
Sbjct: 154 AQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIKAE 213
Query: 237 -IDLSDGDM-----------RKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
+D+ D + RK LNILQS A + ++ E+ VY G P +I I
Sbjct: 214 GLDVEDSGLAAFVRLSNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPLPKDIELISY 272
Query: 285 WLLNESMDLCYK 296
WLLNE +K
Sbjct: 273 WLLNEQFADSFK 284
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 55/76 (72%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
+ +I E+K KGLAL DI+ E+++ V ++++P ++ V L+ ++DIEYRL+ G ++K+QL
Sbjct: 283 FKRIDEMKTRKGLALIDIVREVTMFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQL 342
Query: 513 SALIAAFNSARDKLEA 528
++IA+F AR L A
Sbjct: 343 GSVIASFTRARSALVA 358
>gi|156062848|ref|XP_001597346.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980]
gi|154696876|gb|EDN96614.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 390
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 114/157 (72%), Gaps = 8/157 (5%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLLFYGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 64 DILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARRIYGPKNMRQMVLELNASDDRGI 123
Query: 352 GIVRDQIFQFASTK--------TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+VR+QI FASTK T+ +YKLIILDEADAMT+ AQ ALRR++EK+T N R
Sbjct: 124 EVVREQIKTFASTKQIFSMNSATVSPGAYKLIILDEADAMTSTAQMALRRVMEKYTANTR 183
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
FC+I NY K+ PA+ SRCTRFRF PL S I +D
Sbjct: 184 FCVIANYTHKLSPALLSRCTRFRFSPLKESDIRVLVD 220
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 45/205 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFC+I NY K++PA+ SRCTRFRF PL S I +D VI +E V + +
Sbjct: 175 MEKYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKESDIRVLVDKVIMEENVQINAEA 234
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIF------- 96
A++ LS GDMR+ LN+LQ+ + D + E TI+
Sbjct: 235 TDALVRLSKGDMRRALNVLQACHASSTPIHIKGTPKMEEKDIVRDLITETTIYDCIASPH 294
Query: 97 ---------TLLVSRVEKYRPSTLDELVSHQ-----DIIST-------IEIPESMLVDLV 135
T+L + K ++ + S Q DII+ +++P S+++ +
Sbjct: 295 PADISKIMNTILKTSDVKSCLQMINAIKSTQGLALADIITALSEELIKVDVPASVMITWL 354
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIA 160
++++EYRL+ G SE IQ A++
Sbjct: 355 QGLAEVEYRLSGGGSEVIQTGAVVG 379
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 119/267 (44%), Gaps = 84/267 (31%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TL+++ HQDI++TI + VD ++ + + GT + + AL
Sbjct: 48 VEKYRPDTLEDVSGHQDILATI----NKFVD-TNRLPHLLFYGPPGTGKTSTILALARRI 102
Query: 163 NSARDKLE-VLELNASDDRGIGIVRDQIFQFASTK--------TMHKSSYKLIILDEADA 213
++ + VLELNASDDRGI +VR+QI FASTK T+ +YKLIILDEADA
Sbjct: 103 YGPKNMRQMVLELNASDDRGIEVVREQIKTFASTKQIFSMNSATVSPGAYKLIILDEADA 162
Query: 214 MTNDAQNALRRKL---------------------------------PVTPDGKKAIID-- 238
MT+ AQ ALRR + P+ + ++D
Sbjct: 163 MTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKESDIRVLVDKV 222
Query: 239 ------------------LSDGDMRKVLNILQSAATAHA-----------------DEVN 263
LS GDMR+ LN+LQ+ + D +
Sbjct: 223 IMEENVQINAEATDALVRLSKGDMRRALNVLQACHASSTPIHIKGTPKMEEKDIVRDLIT 282
Query: 264 EDTVYNSVGYPTKTEITNILRWLLNES 290
E T+Y+ + P +I+ I+ +L S
Sbjct: 283 ETTIYDCIASPHPADISKIMNTILKTS 309
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 42/62 (67%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I IK +GLAL DI+T +S + ++++P S+++ + ++++EYRL+ G SE IQ A+
Sbjct: 318 INAIKSTQGLALADIITALSEELIKVDVPASVMITWLQGLAEVEYRLSGGGSEVIQTGAV 377
Query: 516 IA 517
+
Sbjct: 378 VG 379
>gi|357463515|ref|XP_003602039.1| Replication factor C subunit [Medicago truncatula]
gi|355491087|gb|AES72290.1| Replication factor C subunit [Medicago truncatula]
Length = 355
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/153 (62%), Positives = 119/153 (77%), Gaps = 4/153 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+R EN LPHLL YGPPGTGKT+TILA ARKLY AQ++ M+LELNASDDRGI
Sbjct: 51 DIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLY-GAQYHNMILELNASDDRGI 109
Query: 352 GIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
+VR QI FAST+++ K S KL++LDEADAMT DAQ ALRR+IEK+T + RF +IC
Sbjct: 110 DVVRQQIQDFASTQSLSFGVKPSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIC 169
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
N+++KI PA+QSRCTRFRF PLD+ + RL +
Sbjct: 170 NHVNKIIPALQSRCTRFRFAPLDAVHVTERLKH 202
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 111/189 (58%), Gaps = 28/189 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T + RF +ICN+++KI PA+QSRCTRFRF PLD+ + RL +VI E+++V G
Sbjct: 156 IEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAERLDVQDSG 215
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL----LVSRVEKYRPSTLDELVS 116
A++ LS+GDMRK LNILQS A + ++ E+ ++ L +E+ L+E S
Sbjct: 216 LSALVRLSNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPLPKDIEQISYWLLNEQYS 274
Query: 117 HQ----------------DIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI+ I +P ++ V LV ++DIEYRL+ G ++K+
Sbjct: 275 ESFKRIYDMKTRKGLALIDIVREVTMFVFKINMPSAVRVQLVNDLADIEYRLSFGCNDKL 334
Query: 154 QLSALIAAF 162
QL +++A+F
Sbjct: 335 QLGSVVASF 343
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 120/252 (47%), Gaps = 66/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +LD++ +H+DI+ TI+ E+ L L+L GT + + A+
Sbjct: 35 VEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGP-------PGTGKTSTILAVAR 87
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTND 217
A+ +LELNASDDRGI +VR QI FAST+++ K S KL++LDEADAMT D
Sbjct: 88 KLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKPSVKLVLLDEADAMTKD 147
Query: 218 AQNALRR----------------------------------------------------- 224
AQ ALRR
Sbjct: 148 AQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAE 207
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
+L V G A++ LS+GDMRK LNILQS A + ++ E+ VY G P +I I
Sbjct: 208 RLDVQDSGLSALVRLSNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPLPKDIEQISY 266
Query: 285 WLLNESMDLCYK 296
WLLNE +K
Sbjct: 267 WLLNEQYSESFK 278
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 50/67 (74%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
+ +I ++K KGLAL DI+ E+++ V ++ +P ++ V LV ++DIEYRL+ G ++K+QL
Sbjct: 277 FKRIYDMKTRKGLALIDIVREVTMFVFKINMPSAVRVQLVNDLADIEYRLSFGCNDKLQL 336
Query: 513 SALIAAF 519
+++A+F
Sbjct: 337 GSVVASF 343
>gi|357137885|ref|XP_003570529.1| PREDICTED: replication factor C subunit 5-like [Brachypodium
distachyon]
Length = 358
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/153 (61%), Positives = 118/153 (77%), Gaps = 4/153 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+R DEN LPHLL YGPPGTGKT+TILA ARK+Y +Q+ M+LELNASD+RGI
Sbjct: 54 DIVDTIDRLTDENRLPHLLLYGPPGTGKTSTILAVARKIY-GSQYGNMILELNASDERGI 112
Query: 352 GIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
G+VR QI FAS ++ K + KL++LDEADAMT DAQ ALRR+IEK+T + RF +IC
Sbjct: 113 GVVRQQIQDFASAHSLSFGAKPAVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALIC 172
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
N+++KI PA+QSRCTRFRF PLD S + RL +
Sbjct: 173 NHVNKIIPALQSRCTRFRFAPLDGSHVSERLQH 205
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 112/196 (57%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T + RF +ICN+++KI PA+QSRCTRFRF PLD S + RL ++I+ E ++V G
Sbjct: 159 IEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVSERLQHIIKSEGLDVDEGG 218
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL----LVSRVEKYRPSTLDELVS 116
A++ LS GDMRK LNILQS A + ++ E+ ++ + +E+ L+E S
Sbjct: 219 LTALVRLSSGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPMPKDIEQIAFWLLNEPFS 277
Query: 117 HQ----------------DIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
DII I++P ++ V L+ ++DIEYRL ++K+
Sbjct: 278 TSFKYISDMKMRKGLALIDIIREVTMFVFKIKMPCNVRVKLINDLADIEYRLTFACNDKL 337
Query: 154 QLSALIAAFNSARDKL 169
QL ALI+ F SAR +
Sbjct: 338 QLGALISTFTSARTAM 353
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 116/252 (46%), Gaps = 66/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +L ++ +H+DI+ TI+ E+ L L+L GT + + A+
Sbjct: 38 VEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLLLYGP-------PGTGKTSTILAVAR 90
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTND 217
++ +LELNASD+RGIG+VR QI FAS ++ K + KL++LDEADAMT D
Sbjct: 91 KIYGSQYGNMILELNASDERGIGVVRQQIQDFASAHSLSFGAKPAVKLVLLDEADAMTKD 150
Query: 218 AQNALRR----------------------------------------------------- 224
AQ ALRR
Sbjct: 151 AQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVSERLQHIIKSE 210
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
L V G A++ LS GDMRK LNILQS A + ++ E+ VY G P +I I
Sbjct: 211 GLDVDEGGLTALVRLSSGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPMPKDIEQIAF 269
Query: 285 WLLNESMDLCYK 296
WLLNE +K
Sbjct: 270 WLLNEPFSTSFK 281
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 53/76 (69%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I ++K+ KGLAL DI+ E+++ V ++++P ++ V L+ ++DIEYRL ++K+QL AL
Sbjct: 283 ISDMKMRKGLALIDIIREVTMFVFKIKMPCNVRVKLINDLADIEYRLTFACNDKLQLGAL 342
Query: 516 IAAFNSARDKLEAPPD 531
I+ F SAR + A D
Sbjct: 343 ISTFTSARTAMVAAAD 358
>gi|341038392|gb|EGS23384.1| DNA replication factor C-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 388
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/159 (62%), Positives = 115/159 (72%), Gaps = 10/159 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+FI+ N LPHLLFYGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 61 DILATINKFIESNRLPHLLFYGPPGTGKTSTILALARRIYGAENMRQMVLELNASDDRGI 120
Query: 352 GIVRDQIFQFASTK---TMHKS-------SYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+VR+QI FASTK TM S ++KLIILDEADAMTN AQ ALRRI+EK+T N
Sbjct: 121 EVVREQIKTFASTKQIFTMGSSAGRAGIAAFKLIILDEADAMTNTAQMALRRIMEKYTAN 180
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
RFCII NY K+ PA+ SRCTRFRF PL I S +D
Sbjct: 181 TRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRSLVD 219
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 114/217 (52%), Gaps = 48/217 (22%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I S +D VIE+E V +TPD
Sbjct: 174 MEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRSLVDKVIEEENVKITPDA 233
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH------------ADEVNEDTIFTLLVSRVEKYRP 108
++++ LS GDMR+ LN+LQ+ + D++ DTI T + P
Sbjct: 234 VESLVKLSRGDMRRALNVLQACHASSTPLQLRDGPKIPGDQIVRDTITTETIYNCVAAPP 293
Query: 109 -----STLDELVSHQD------IISTIEIPESM-LVDLVLKMS----------------- 139
L+ L+S D II+ ++I + + L D++ +S
Sbjct: 294 PDAIKKILNTLLSTSDVTACLTIINMLKISQGLALADIITSLSEELVKLEVKPQVMITWL 353
Query: 140 ----DIEYRLAAGTSEKIQLSALIAAFNSARDKLEVL 172
+IEYR+A+G +E IQ +A++ A R+ +E++
Sbjct: 354 DALAEIEYRVASGANEAIQTAAVVGAV---RNGVELM 387
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 119/271 (43%), Gaps = 90/271 (33%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+TL ++ HQDI++TI I + L L+ + GT + + AL
Sbjct: 45 VEKYRPATLSDVSGHQDILATINKFIESNRLPHLL-------FYGPPGTGKTSTILALAR 97
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTK---TMHKS-------SYKLIILD 209
A + + VLELNASDDRGI +VR+QI FASTK TM S ++KLIILD
Sbjct: 98 RIYGAENMRQMVLELNASDDRGIEVVREQIKTFASTKQIFTMGSSAGRAGIAAFKLIILD 157
Query: 210 EADAMTNDAQNALRRKL---------------------------------PVTPDGKKAI 236
EADAMTN AQ ALRR + P+ +++
Sbjct: 158 EADAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRSL 217
Query: 237 ID--------------------LSDGDMRKVLNILQSAATAHA----------------- 259
+D LS GDMR+ LN+LQ+ +
Sbjct: 218 VDKVIEEENVKITPDAVESLVKLSRGDMRRALNVLQACHASSTPLQLRDGPKIPGDQIVR 277
Query: 260 DEVNEDTVYNSVGYPTKTEITNILRWLLNES 290
D + +T+YN V P I IL LL+ S
Sbjct: 278 DTITTETIYNCVAAPPPDAIKKILNTLLSTS 308
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 45/67 (67%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +KI +GLAL DI+T +S + +LE+ +++ + +++IEYR+A+G +E IQ +A+
Sbjct: 317 INMLKISQGLALADIITSLSEELVKLEVKPQVMITWLDALAEIEYRVASGANEAIQTAAV 376
Query: 516 IAAFNSA 522
+ A +
Sbjct: 377 VGAVRNG 383
>gi|326489719|dbj|BAK01840.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531584|dbj|BAJ97796.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 359
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/153 (61%), Positives = 118/153 (77%), Gaps = 4/153 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+R DEN LPHLL YGPPGTGKT+TILA ARK+Y +Q+ M+LELNASD+RGI
Sbjct: 55 DIVDTIDRLTDENRLPHLLLYGPPGTGKTSTILAVARKIY-GSQYGNMILELNASDERGI 113
Query: 352 GIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
G+VR QI FAS ++ K + KL++LDEADAMT DAQ ALRR+IEK+T + RF +IC
Sbjct: 114 GVVRQQIQDFASAHSLSFGAKPAVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALIC 173
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
N+++KI PA+QSRCTRFRF PLD S + RL +
Sbjct: 174 NHVNKIIPALQSRCTRFRFAPLDGSHVSERLRH 206
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 113/196 (57%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T + RF +ICN+++KI PA+QSRCTRFRF PLD S + RL ++I+ E ++V G
Sbjct: 160 IEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVSERLRHIIKSEGLDVDEGG 219
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL----LVSRVEKYRPSTLDELVS 116
A++ LS+GDMRK LNILQS A + ++ E+ ++ + +E+ L+E S
Sbjct: 220 LSALVRLSNGDMRKSLNILQSTHMA-SQQITEEAVYLCTGNPMPKDIEQIAFWLLNEPFS 278
Query: 117 HQ----------------DIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
DII I++P S+ V L+ ++DIEYRL ++K+
Sbjct: 279 TSFKHIADMKMRKGLALIDIIREVTMFVFKIKMPSSVRVKLINDLADIEYRLTFACNDKL 338
Query: 154 QLSALIAAFNSARDKL 169
QL ALI+ F +AR +
Sbjct: 339 QLGALISTFTTARTAM 354
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 117/252 (46%), Gaps = 66/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +L ++ +H+DI+ TI+ E+ L L+L GT + + A+
Sbjct: 39 VEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLLLYGP-------PGTGKTSTILAVAR 91
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTND 217
++ +LELNASD+RGIG+VR QI FAS ++ K + KL++LDEADAMT D
Sbjct: 92 KIYGSQYGNMILELNASDERGIGVVRQQIQDFASAHSLSFGAKPAVKLVLLDEADAMTKD 151
Query: 218 AQNALRR----------------------------------------------------- 224
AQ ALRR
Sbjct: 152 AQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVSERLRHIIKSE 211
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
L V G A++ LS+GDMRK LNILQS A + ++ E+ VY G P +I I
Sbjct: 212 GLDVDEGGLSALVRLSNGDMRKSLNILQSTHMA-SQQITEEAVYLCTGNPMPKDIEQIAF 270
Query: 285 WLLNESMDLCYK 296
WLLNE +K
Sbjct: 271 WLLNEPFSTSFK 282
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 54/79 (68%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
+ I ++K+ KGLAL DI+ E+++ V ++++P S+ V L+ ++DIEYRL ++K+QL
Sbjct: 281 FKHIADMKMRKGLALIDIIREVTMFVFKIKMPSSVRVKLINDLADIEYRLTFACNDKLQL 340
Query: 513 SALIAAFNSARDKLEAPPD 531
ALI+ F +AR + A D
Sbjct: 341 GALISTFTTARTAMVAAAD 359
>gi|444317044|ref|XP_004179179.1| hypothetical protein TBLA_0B08450 [Tetrapisispora blattae CBS 6284]
gi|387512219|emb|CCH59660.1| hypothetical protein TBLA_0B08450 [Tetrapisispora blattae CBS 6284]
Length = 333
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/144 (63%), Positives = 113/144 (78%), Gaps = 1/144 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ RF+ E +LPHLLFYGPPGTGKT+TI+A AR++Y ++ MVLELNASDDRGI +VR+
Sbjct: 35 VRRFVSEGKLPHLLFYGPPGTGKTSTIVALAREIYGN-NYSNMVLELNASDDRGIDVVRN 93
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI +FAST+ + +KLIILDEADAMTN AQNALRRIIEK+T N RFCI+ NY K+ P
Sbjct: 94 QIKEFASTRQIFSKGFKLIILDEADAMTNAAQNALRRIIEKYTKNTRFCILANYAHKLTP 153
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLD 440
A+ SRCTRFRF PL + R+D
Sbjct: 154 ALLSRCTRFRFQPLPIESMRQRID 177
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 119/251 (47%), Gaps = 65/251 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+ LDE+ +++ST+ + E L L+ + GT + + AL
Sbjct: 14 VEKYRPNKLDEVYGQNEVVSTVRRFVSEGKLPHLL-------FYGPPGTGKTSTIVALAR 66
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
VLELNASDDRGI +VR+QI +FAST+ + +KLIILDEADAMTN AQN
Sbjct: 67 EIYGNNYSNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTNAAQN 126
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR K+
Sbjct: 127 ALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPIESMRQRIDNVIVKEKVK 186
Query: 228 VTPDGKKAIIDLSDGDMRKVLNIL---QSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
++ D A + LS GDMRKVLN++ Q+ ++ +E++E+ VY +G P +I IL
Sbjct: 187 ISEDALNATLKLSKGDMRKVLNVIQACQAGQNSNENEIDEELVYECIGTPKPNDIKMILN 246
Query: 285 WLLNESMDLCY 295
++NE + Y
Sbjct: 247 SIMNEDWNTAY 257
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 107/198 (54%), Gaps = 35/198 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY K+TPA+ SRCTRFRF PL + R+D VI +EKV ++ D
Sbjct: 132 IEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPIESMRQRIDNVIVKEKVKISEDA 191
Query: 61 KKAIIDLSDGDMRKVLNIL---QSAATAHADEVNEDTIFTLL------------------ 99
A + LS GDMRKVLN++ Q+ ++ +E++E+ ++ +
Sbjct: 192 LNATLKLSKGDMRKVLNVIQACQAGQNSNENEIDEELVYECIGTPKPNDIKMILNSIMNE 251
Query: 100 --------VSRVEKYRPSTLDELVSHQDIISTIE----IPESMLVDLVLKMSDIEYRLAA 147
+ R++ + L +L+ + I+ +E E + ++ ++ DIEY ++
Sbjct: 252 DWNTAYFTMERIKVTQGLALVDLI--EGIVEVLEGYELKNEETRISILSRLGDIEYSISH 309
Query: 148 GTSEKIQLSALIAAFNSA 165
G +E++Q SA+I S+
Sbjct: 310 GGNERVQSSAVIGVIKSS 327
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIP-ESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
Y ++ IK+ +GLAL D++ I ++ E+ E + ++ ++ DIEY ++ G +E++Q
Sbjct: 257 YFTMERIKVTQGLALVDLIEGIVEVLEGYELKNEETRISILSRLGDIEYSISHGGNERVQ 316
Query: 512 LSALIAAFNSA 522
SA+I S+
Sbjct: 317 SSAVIGVIKSS 327
>gi|6324039|ref|NP_014109.1| replication factor C subunit 3 [Saccharomyces cerevisiae S288c]
gi|585844|sp|P38629.1|RFC3_YEAST RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3; AltName: Full=Activator 1 40 kDa subunit
gi|439118|gb|AAA34969.1| replication factor C [Saccharomyces cerevisiae]
gi|841466|gb|AAC49062.1| Rfc3p [Saccharomyces cerevisiae]
gi|1050872|gb|AAC49110.1| replication factor C, 40 kDa subunit [Saccharomyces cerevisiae]
gi|1302375|emb|CAA96207.1| RFC3 [Saccharomyces cerevisiae]
gi|285814375|tpg|DAA10269.1| TPA: replication factor C subunit 3 [Saccharomyces cerevisiae
S288c]
gi|392297062|gb|EIW08163.1| Rfc3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 340
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/158 (59%), Positives = 118/158 (74%), Gaps = 8/158 (5%)
Query: 289 ESMDLCYKIN-------RFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVL 341
E++D Y N +F+DE +LPHLLFYGPPGTGKT+TI+A AR++Y K ++ MVL
Sbjct: 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVL 80
Query: 342 ELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
ELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNALRR+IE++T N
Sbjct: 81 ELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKN 140
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RFC++ NY K+ PA+ SRCTRFRF PL I R+
Sbjct: 141 TRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRI 178
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 124/255 (48%), Gaps = 63/255 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TLDE+ ++I+T+ VD K+ + + GT + + AL
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVR----KFVDEG-KLPHLLFYGPPGTGKTSTIVALAREI 70
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
VLELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNAL
Sbjct: 71 YGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNAL 130
Query: 223 RR-----------------------------------------------------KLPVT 229
RR KL ++
Sbjct: 131 RRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLS 190
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTVYNSVGYPTKTEITNILRW 285
P+ +KA+I+LS+GDMR+VLN+LQS DE+++D +Y G P +++ +L+
Sbjct: 191 PNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKS 250
Query: 286 LLNESMDLC-YKINR 299
+L + Y +N+
Sbjct: 251 ILEDDWGTAHYTLNK 265
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 113/201 (56%), Gaps = 40/201 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T N RFC++ NY K+TPA+ SRCTRFRF PL I R+ V+ EK+ ++P+
Sbjct: 134 IERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNA 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTIFTLLVSRVEKYRPS------- 109
+KA+I+LS+GDMR+VLN+LQS DE+++D I+ + RPS
Sbjct: 194 EKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAP----RPSDLKAVLK 249
Query: 110 ------------TLDELVSHQ-----DIISTI-------EIP-ESMLVDLVLKMSDIEYR 144
TL+++ S + D+I I E+ E V L+ K++DIEY
Sbjct: 250 SILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYS 309
Query: 145 LAAGTSEKIQLSALIAAFNSA 165
++ G +++IQ SA+I A ++
Sbjct: 310 ISKGGNDQIQGSAVIGAIKAS 330
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIP-ESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
+ + +++ KGLAL D++ I ++ E+ E V L+ K++DIEY ++ G +++IQ
Sbjct: 260 HYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQ 319
Query: 512 LSALIAAFNSA 522
SA+I A ++
Sbjct: 320 GSAVIGAIKAS 330
>gi|347832701|emb|CCD48398.1| similar to replication factor C subunit 3 [Botryotinia fuckeliana]
Length = 390
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/147 (63%), Positives = 110/147 (74%), Gaps = 8/147 (5%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLLFYGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 65 DILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGI 124
Query: 352 GIVRDQIFQFASTKTMHKS--------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+VR+QI FASTK + S +YKLIILDEADAMT+ AQ ALRR++EK+T N R
Sbjct: 125 DVVREQIKTFASTKQIFASKSSSTSPGAYKLIILDEADAMTSTAQMALRRVMEKYTANTR 184
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPL 430
FC+I NY K+ PA+ SRCTRFRF PL
Sbjct: 185 FCVIANYTHKLSPALLSRCTRFRFSPL 211
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 45/205 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFC+I NY K++PA+ SRCTRFRF PL + I +D VI +E V + +
Sbjct: 176 MEKYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDKVIAEENVQINAEA 235
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIFTLL---- 99
A++ LS GDMR+ LN+LQ+ + D + E TI+ +
Sbjct: 236 TDALVRLSKGDMRRALNVLQACHASSTPIHIQGTPKLEEKDIVRDLITETTIYDCIASPH 295
Query: 100 ---VSRVEKYRPSTLD--------------ELVSHQDIIST-------IEIPESMLVDLV 135
+S++ T D + ++ DII+ +++P S+++ +
Sbjct: 296 PADISKIMNTILKTTDVKSCLQMINAVKSTQGLALADIITALSEELTKLDVPASVMITWL 355
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIA 160
++++EYRL+ G SE IQ AL+
Sbjct: 356 QGLAEVEYRLSGGGSEVIQTGALVG 380
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 81/131 (61%), Gaps = 14/131 (10%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL+++ HQDI++TI + VD ++ + + GT + + AL
Sbjct: 49 VEKYRPDTLEDVSGHQDILATI----NKFVD-TNRLPHLLFYGPPGTGKTSTILALARRI 103
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS--------SYKLIILDEADA 213
+ S + VLELNASDDRGI +VR+QI FASTK + S +YKLIILDEADA
Sbjct: 104 YGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFASKSSSTSPGAYKLIILDEADA 163
Query: 214 MTNDAQNALRR 224
MT+ AQ ALRR
Sbjct: 164 MTSTAQMALRR 174
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K +GLAL DI+T +S + +L++P S+++ + ++++EYRL+ G SE IQ AL
Sbjct: 319 INAVKSTQGLALADIITALSEELTKLDVPASVMITWLQGLAEVEYRLSGGGSEVIQTGAL 378
Query: 516 IA 517
+
Sbjct: 379 VG 380
>gi|349580660|dbj|GAA25819.1| K7_Rfc3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 340
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/158 (59%), Positives = 118/158 (74%), Gaps = 8/158 (5%)
Query: 289 ESMDLCYKIN-------RFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVL 341
E++D Y N +F+DE +LPHLLFYGPPGTGKT+TI+A AR++Y K ++ MVL
Sbjct: 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVL 80
Query: 342 ELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
ELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNALRR+IE++T N
Sbjct: 81 ELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKN 140
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RFC++ NY K+ PA+ SRCTRFRF PL I R+
Sbjct: 141 TRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRI 178
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 124/255 (48%), Gaps = 63/255 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TLDE+ ++I+T+ VD K+ + + GT + + AL
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVR----KFVDEG-KLPHLLFYGPPGTGKTSTIVALAREI 70
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
VLELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNAL
Sbjct: 71 YGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNAL 130
Query: 223 RR-----------------------------------------------------KLPVT 229
RR KL ++
Sbjct: 131 RRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLS 190
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTVYNSVGYPTKTEITNILRW 285
P+ +KA+I+LS+GDMR+VLN+LQS DE+++D +Y G P +++ +L+
Sbjct: 191 PNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKS 250
Query: 286 LLNESMDLC-YKINR 299
+L + Y +N+
Sbjct: 251 ILEDDWGTAHYTLNK 265
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 113/201 (56%), Gaps = 40/201 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T N RFC++ NY K+TPA+ SRCTRFRF PL I R+ V+ EK+ ++P+
Sbjct: 134 IERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNA 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTIFTLLVSRVEKYRPS------- 109
+KA+I+LS+GDMR+VLN+LQS DE+++D I+ + RPS
Sbjct: 194 EKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAP----RPSDLKAVLK 249
Query: 110 ------------TLDELVSHQ-----DIISTI-------EIP-ESMLVDLVLKMSDIEYR 144
TL+++ S + D+I I E+ E V L+ K++DIEY
Sbjct: 250 SILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYS 309
Query: 145 LAAGTSEKIQLSALIAAFNSA 165
++ G +++IQ SA+I A ++
Sbjct: 310 ISKGGNDQIQGSAVIGAIKAS 330
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIP-ESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
+ + +++ KGLAL D++ I ++ E+ E V L+ K++DIEY ++ G +++IQ
Sbjct: 260 HYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQ 319
Query: 512 LSALIAAFNSA 522
SA+I A ++
Sbjct: 320 GSAVIGAIKAS 330
>gi|151944257|gb|EDN62536.1| replication factor C subunit 3 [Saccharomyces cerevisiae YJM789]
gi|190409258|gb|EDV12523.1| replication factor C subunit 3 [Saccharomyces cerevisiae RM11-1a]
gi|256271294|gb|EEU06366.1| Rfc3p [Saccharomyces cerevisiae JAY291]
gi|259149079|emb|CAY82321.1| Rfc3p [Saccharomyces cerevisiae EC1118]
gi|323331837|gb|EGA73249.1| Rfc3p [Saccharomyces cerevisiae AWRI796]
gi|323335982|gb|EGA77259.1| Rfc3p [Saccharomyces cerevisiae Vin13]
gi|323346957|gb|EGA81235.1| Rfc3p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352828|gb|EGA85130.1| Rfc3p [Saccharomyces cerevisiae VL3]
gi|365763611|gb|EHN05138.1| Rfc3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 340
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/158 (59%), Positives = 118/158 (74%), Gaps = 8/158 (5%)
Query: 289 ESMDLCYKIN-------RFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVL 341
E++D Y N +F+DE +LPHLLFYGPPGTGKT+TI+A AR++Y K ++ MVL
Sbjct: 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVL 80
Query: 342 ELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
ELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNALRR+IE++T N
Sbjct: 81 ELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKN 140
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RFC++ NY K+ PA+ SRCTRFRF PL I R+
Sbjct: 141 TRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRI 178
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 124/255 (48%), Gaps = 63/255 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TLDE+ ++I+T+ VD K+ + + GT + + AL
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVR----KFVDEG-KLPHLLFYGPPGTGKTSTIVALAREI 70
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
VLELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNAL
Sbjct: 71 YGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNAL 130
Query: 223 RR-----------------------------------------------------KLPVT 229
RR KL ++
Sbjct: 131 RRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLS 190
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTVYNSVGYPTKTEITNILRW 285
P+ +KA+I+LS+GDMR+VLN+LQS DE+++D +Y G P +++ +L+
Sbjct: 191 PNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKS 250
Query: 286 LLNESMDLC-YKINR 299
+L + Y +N+
Sbjct: 251 ILEDDWGTAHYTLNK 265
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 113/201 (56%), Gaps = 40/201 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T N RFC++ NY K+TPA+ SRCTRFRF PL I R+ V+ EK+ ++P+
Sbjct: 134 IERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNA 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTIFTLLVSRVEKYRPS------- 109
+KA+I+LS+GDMR+VLN+LQS DE+++D I+ + RPS
Sbjct: 194 EKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAP----RPSDLKAVLK 249
Query: 110 ------------TLDELVSHQ-----DIISTI-------EIP-ESMLVDLVLKMSDIEYR 144
TL+++ S + D+I I E+ E V L+ K++DIEY
Sbjct: 250 SILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYS 309
Query: 145 LAAGTSEKIQLSALIAAFNSA 165
++ G +++IQ SA+I A ++
Sbjct: 310 ISKGGNDQIQGSAVIGAIKAS 330
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIP-ESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
+ + +++ KGLAL D++ I ++ E+ E V L+ K++DIEY ++ G +++IQ
Sbjct: 260 HYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQ 319
Query: 512 LSALIAAFNSA 522
SA+I A ++
Sbjct: 320 GSAVIGAIKAS 330
>gi|154313201|ref|XP_001555927.1| hypothetical protein BC1G_05602 [Botryotinia fuckeliana B05.10]
Length = 390
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/147 (63%), Positives = 110/147 (74%), Gaps = 8/147 (5%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLLFYGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 65 DILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGI 124
Query: 352 GIVRDQIFQFASTKTMHKS--------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+VR+QI FASTK + S +YKLIILDEADAMT+ AQ ALRR++EK+T N R
Sbjct: 125 DVVREQIKTFASTKQIFASKSSSTSPGAYKLIILDEADAMTSTAQMALRRVMEKYTANTR 184
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPL 430
FC+I NY K+ PA+ SRCTRFRF PL
Sbjct: 185 FCVIANYTHKLSPALLSRCTRFRFSPL 211
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 45/205 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFC+I NY K++PA+ SRCTRFRF PL + I +D VI +E V + +
Sbjct: 176 MEKYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDKVIAEENVQINAEA 235
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIF------- 96
A++ LS GDMR+ LN+LQ+ + D + E TI+
Sbjct: 236 TDALVRLSKGDMRRALNVLQACHASSTPIHIQGTPKLEEKDIVRDLITETTIYDCIASPH 295
Query: 97 ---------TLLVSRVEKYRPSTLDELVSHQ-----DIIST-------IEIPESMLVDLV 135
T+L + K ++ + S Q DII+ +++P S+++ +
Sbjct: 296 PADISKIMNTILKTTDVKSCLQMINAVKSTQGLALADIITALSEELTKLDVPASVMITWL 355
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIA 160
++++EYRL+ G SE IQ AL+
Sbjct: 356 QGLAEVEYRLSGGGSEVIQTGALVG 380
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 82/131 (62%), Gaps = 14/131 (10%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TL+++ HQDI++TI + VD ++ + + GT + + AL
Sbjct: 49 VEKYRPDTLEDVSGHQDILATI----NKFVD-TNRLPHLLFYGPPGTGKTSTILALARRI 103
Query: 163 NSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKS--------SYKLIILDEADA 213
+++ + VLELNASDDRGI +VR+QI FASTK + S +YKLIILDEADA
Sbjct: 104 YGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFASKSSSTSPGAYKLIILDEADA 163
Query: 214 MTNDAQNALRR 224
MT+ AQ ALRR
Sbjct: 164 MTSTAQMALRR 174
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K +GLAL DI+T +S + +L++P S+++ + ++++EYRL+ G SE IQ AL
Sbjct: 319 INAVKSTQGLALADIITALSEELTKLDVPASVMITWLQGLAEVEYRLSGGGSEVIQTGAL 378
Query: 516 IA 517
+
Sbjct: 379 VG 380
>gi|323303302|gb|EGA57098.1| Rfc3p [Saccharomyces cerevisiae FostersB]
Length = 340
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 94/158 (59%), Positives = 118/158 (74%), Gaps = 8/158 (5%)
Query: 289 ESMDLCYKIN-------RFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVL 341
E++D Y N +F+DE +LPHLLFYGPPGTGKT+TI+A AR++Y K ++ MVL
Sbjct: 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVL 80
Query: 342 ELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
ELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNALRR+IE++T N
Sbjct: 81 ELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKN 140
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RFC++ NY K+ PA+ SRCTRFRF PL I R+
Sbjct: 141 TRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRI 178
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 124/255 (48%), Gaps = 63/255 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TLDE+ ++I+T+ VD K+ + + GT + + AL
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVR----KFVDEG-KLPHLLFYGPPGTGKTSTIVALAREI 70
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
VLELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNAL
Sbjct: 71 YGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNAL 130
Query: 223 RR-----------------------------------------------------KLPVT 229
RR KL ++
Sbjct: 131 RRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLS 190
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTVYNSVGYPTKTEITNILRW 285
P+ +KA+I+LS+GDMR+VLN+LQS DE+++D +Y G P +++ +L+
Sbjct: 191 PNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKS 250
Query: 286 LLNESMDLC-YKINR 299
+L + Y +N+
Sbjct: 251 ILEDDWGTAHYTLNK 265
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 113/201 (56%), Gaps = 40/201 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T N RFC++ NY K+TPA+ SRCTRFRF PL I R+ V+ EK+ ++P+
Sbjct: 134 IERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNA 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTIFTLLVSRVEKYRPS------- 109
+KA+I+LS+GDMR+VLN+LQS DE+++D I+ + RPS
Sbjct: 194 EKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAP----RPSDLKAVLK 249
Query: 110 ------------TLDELVSHQ-----DIISTI-------EIP-ESMLVDLVLKMSDIEYR 144
TL+++ S + D+I I E+ E V L+ K++DIEY
Sbjct: 250 SILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYS 309
Query: 145 LAAGTSEKIQLSALIAAFNSA 165
++ G +++IQ SA+I A ++
Sbjct: 310 ISKGGNDQIQGSAVIGAIKAS 330
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIP-ESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
+ + +++ KGLAL D++ I ++ E+ E V L+ K++DIEY ++ G +++IQ
Sbjct: 260 HYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQ 319
Query: 512 LSALIAAFNSA 522
SA+I A ++
Sbjct: 320 GSAVIGAIKAS 330
>gi|429863915|gb|ELA38322.1| replication factor c subunit 3 [Colletotrichum gloeosporioides Nara
gc5]
Length = 389
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 95/149 (63%), Positives = 109/149 (73%), Gaps = 10/149 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 61 DILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGAENMRQMVLELNASDDRGI 120
Query: 352 GIVRDQIFQFASTKTMHK----------SSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+VR+QI FASTK + +SYKLIILDEADAMTN AQ ALRRI+EK+T N
Sbjct: 121 DVVREQIKTFASTKQIFTLGPAAKAGGMASYKLIILDEADAMTNTAQMALRRIMEKYTVN 180
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 181 TRFCIIANYSHKLSPALLSRCTRFRFSPL 209
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 45/210 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VIE+E V + +
Sbjct: 174 MEKYTVNTRFCIIANYSHKLSPALLSRCTRFRFSPLKERDIRVLVDKVIEEEHVKIMSEA 233
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIFTLLVSRV 103
+A++ LS GDMR+ LN+LQ+ + + + +TI+ + +
Sbjct: 234 TEALVKLSKGDMRRALNVLQACHASSTPLRTKDEPKVPDSEIVRETITTETIYNCIAAPQ 293
Query: 104 EKYRPSTLDELVSHQ---------------------DIIS-------TIEIPESMLVDLV 135
LD L+S DII+ T+E+ +++ +
Sbjct: 294 PDAIQEILDTLLSTTDVTTCLTTINSLKVSRGLALADIITAVSEQLATLEVKPEVMIKWL 353
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSA 165
++DIE+R+A G SE +Q A++ S
Sbjct: 354 DGLADIEHRVAGGGSEAVQTGAVVGVIRSG 383
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 79/135 (58%), Gaps = 20/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+++ HQDI++TI + + L L+L GT + + AL
Sbjct: 45 VEKYRPVNLNDVSGHQDILATINKFVDSNRLPHLLLYGP-------PGTGKTSTILALAR 97
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK----------SSYKLIILD 209
A + + VLELNASDDRGI +VR+QI FASTK + +SYKLIILD
Sbjct: 98 RIYGAENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGPAAKAGGMASYKLIILD 157
Query: 210 EADAMTNDAQNALRR 224
EADAMTN AQ ALRR
Sbjct: 158 EADAMTNTAQMALRR 172
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K+ +GLAL DI+T +S + LE+ +++ + ++DIE+R+A G SE +Q A+
Sbjct: 317 INSLKVSRGLALADIITAVSEQLATLEVKPEVMIKWLDGLADIEHRVAGGGSEAVQTGAV 376
Query: 516 IAAFNSA 522
+ S
Sbjct: 377 VGVIRSG 383
>gi|452819401|gb|EME26461.1| replication factor C subunit 3/5 [Galdieria sulphuraria]
Length = 330
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 93/148 (62%), Positives = 115/148 (77%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RF++ N LPH+LFYGPPGTGKT+TILACA +Y F +MVLELNASDDRGI
Sbjct: 27 DIIVTILRFVNSNSLPHMLFYGPPGTGKTSTILACAEHMYG-TNFKSMVLELNASDDRGI 85
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR++I F ST+ + + KL+ILDEADAMT+ AQ ALRRI+EK+T++ RFC+ICNY
Sbjct: 86 DVVRNEIKDFCSTQRIFATGVKLVILDEADAMTSAAQMALRRIMEKYTSSTRFCLICNYA 145
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+KI PA+QSRCTRFRFGPL I RL
Sbjct: 146 NKIIPALQSRCTRFRFGPLKEEDIRLRL 173
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 104/200 (52%), Gaps = 28/200 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T++ RFC+ICNY +KI PA+QSRCTRFRFGPL I RL + E+E V D
Sbjct: 129 MEKYTSSTRFCLICNYANKIIPALQSRCTRFRFGPLKEEDIRLRLGQIAEREGVVFEKDA 188
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------------DEVNEDTIFT 97
+ II LS GDMR +NILQS + D +NE+ F+
Sbjct: 189 LETIIQLSQGDMRSCINILQSTFLSSGKVTCSTVYENTGNPSNEEMEQIMDWLNEEDDFS 248
Query: 98 LLVSRVEKYRP----STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+V+K + + +D L + T + L+ K++DIE++ A G SE +
Sbjct: 249 SCYDKVKKMKAERGFALIDILRQIHKRLLTRNMSRRAKAYLLEKLADIEHQFAFGGSELL 308
Query: 154 QLSALIAAFNSARDKLEVLE 173
L +LI +F + LEVL+
Sbjct: 309 NLCSLIGSFQIMK-TLEVLD 327
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 108/255 (42%), Gaps = 76/255 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
+EKYRP T ++++S QDII TI +P + GT + +
Sbjct: 11 LEKYRPKTFNDVLSQQDIIVTILRFVNSNSLPHMLFYG------------PPGTGKTSTI 58
Query: 156 SALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMT 215
A K VLELNASDDRGI +VR++I F ST+ + + KL+ILDEADAMT
Sbjct: 59 LACAEHMYGTNFKSMVLELNASDDRGIDVVRNEIKDFCSTQRIFATGVKLVILDEADAMT 118
Query: 216 NDAQNAL----------------------------------------------------- 222
+ AQ AL
Sbjct: 119 SAAQMALRRIMEKYTSSTRFCLICNYANKIIPALQSRCTRFRFGPLKEEDIRLRLGQIAE 178
Query: 223 RRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNI 282
R + D + II LS GDMR +NILQS + + +V TVY + G P+ E+ I
Sbjct: 179 REGVVFEKDALETIIQLSQGDMRSCINILQSTFLS-SGKVTCSTVYENTGNPSNEEMEQI 237
Query: 283 LRWLLNESMDL--CY 295
+ W LNE D CY
Sbjct: 238 MDW-LNEEDDFSSCY 251
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y K++++K E+G AL DIL +I + + L+ K++DIE++ A G SE + L
Sbjct: 251 YDKVKKMKAERGFALIDILRQIHKRLLTRNMSRRAKAYLLEKLADIEHQFAFGGSELLNL 310
Query: 513 SALIAAFNSAR--DKLEAPP 530
+LI +F + + L+A P
Sbjct: 311 CSLIGSFQIMKTLEVLDAAP 330
>gi|346325998|gb|EGX95594.1| activator 1 subunit 3 [Cordyceps militaris CM01]
Length = 420
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 96/153 (62%), Positives = 110/153 (71%), Gaps = 14/153 (9%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+TILA AR++Y AQ MVLELNASDDRGI
Sbjct: 63 DILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGAAQARQMVLELNASDDRGI 122
Query: 352 GIVRDQIFQFASTKTMHK--------------SSYKLIILDEADAMTNDAQNALRRIIEK 397
+VR+QI FASTK + + YKLIILDEADAMTN AQ ALRRI+EK
Sbjct: 123 DVVREQIKTFASTKQIFNMGGAAAAAGRSSAMAGYKLIILDEADAMTNTAQMALRRIMEK 182
Query: 398 FTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
+T N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 183 YTANTRFCIIANYAHKLSPALLSRCTRFRFSPL 215
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 82/140 (58%), Gaps = 26/140 (18%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
+EKYRP +LD++ HQDI++TI + VD + + + L G + S ++A
Sbjct: 47 IEKYRPVSLDDVEGHQDILATI----NKFVD----SNRLPHLLLYGPPGTGKTSTILALA 98
Query: 161 --AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK--------------SSYK 204
+ +A+ + VLELNASDDRGI +VR+QI FASTK + + YK
Sbjct: 99 RRIYGAAQARQMVLELNASDDRGIDVVREQIKTFASTKQIFNMGGAAAAAGRSSAMAGYK 158
Query: 205 LIILDEADAMTNDAQNALRR 224
LIILDEADAMTN AQ ALRR
Sbjct: 159 LIILDEADAMTNTAQMALRR 178
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 56/81 (69%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL + I + V+++E V + +
Sbjct: 180 MEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLKEADIRQLVVKVVDEEGVRIGAEA 239
Query: 61 KKAIIDLSDGDMRKVLNILQS 81
A++ LS GDMR+ LN+LQ+
Sbjct: 240 VDALVKLSKGDMRRALNVLQA 260
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 42/62 (67%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+ IK +GLAL D++T ++ + +L++P ++++ + +++IE+R+A G SE +Q A+
Sbjct: 348 VNSIKRLQGLALADVITALAEELGKLDVPPAVMITWLDGLAEIEHRVAGGGSEVLQTGAV 407
Query: 516 IA 517
+
Sbjct: 408 VG 409
>gi|367036204|ref|XP_003667384.1| hypothetical protein MYCTH_2313161 [Myceliophthora thermophila ATCC
42464]
gi|347014657|gb|AEO62139.1| hypothetical protein MYCTH_2313161 [Myceliophthora thermophila ATCC
42464]
Length = 389
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 97/159 (61%), Positives = 112/159 (70%), Gaps = 10/159 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLLFYGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 62 DILATINKFVDSNRLPHLLFYGPPGTGKTSTILALARRIYGAENMRQMVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+VR+QI FASTK + S +KLIILDEADAMTN AQ ALRRI+EK+T N
Sbjct: 122 DVVREQIKTFASTKQIFSMSASATRSGIANFKLIILDEADAMTNTAQMALRRIMEKYTAN 181
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
RFCII NY K+ PA+ SRCTRFRF PL I +D
Sbjct: 182 TRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRGLID 220
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 112/217 (51%), Gaps = 48/217 (22%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VIE+E V + P+
Sbjct: 175 MEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRGLIDKVIEEENVKIMPEA 234
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-------------AHADEVNE----DTIFTLLVSRV 103
+++ LS GDMR+ LN+LQ+ A D V E +TI+ + +
Sbjct: 235 TDSLVRLSKGDMRRALNVLQACHASSTPLQPREGPKIAEKDIVRETITTETIYNCVAAPP 294
Query: 104 EKYRPSTLDELVSHQDI------ISTIEIPESM-LVDLVLKMS----------------- 139
L+ L+S D+ I+T+++ + + L D++ +S
Sbjct: 295 PDAIKKILNTLLSTSDVTSCLSTINTLKVAQGLALADIITALSEEVMKLEVKPQVMITWL 354
Query: 140 ----DIEYRLAAGTSEKIQLSALIAAFNSARDKLEVL 172
+IE+R+++G +E IQ SA++ A R+ +E++
Sbjct: 355 DTLAEIEHRVSSGANEAIQTSAVVGAI---RNGVELM 388
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 118/269 (43%), Gaps = 86/269 (31%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP+TL ++ HQDI++TI + VD ++ + + GT + + AL
Sbjct: 46 VEKYRPATLADVSGHQDILATI----NKFVD-SNRLPHLLFYGPPGTGKTSTILALARRI 100
Query: 163 NSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIILDEA 211
A + + VLELNASDDRGI +VR+QI FASTK + S +KLIILDEA
Sbjct: 101 YGAENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMSASATRSGIANFKLIILDEA 160
Query: 212 DAMTNDAQNALRRKL---------------------------------PVTPDGKKAIID 238
DAMTN AQ ALRR + P+ + +ID
Sbjct: 161 DAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRGLID 220
Query: 239 --------------------LSDGDMRKVLNILQSAAT-------------AHADEVNE- 264
LS GDMR+ LN+LQ+ A D V E
Sbjct: 221 KVIEEENVKIMPEATDSLVRLSKGDMRRALNVLQACHASSTPLQPREGPKIAEKDIVRET 280
Query: 265 ---DTVYNSVGYPTKTEITNILRWLLNES 290
+T+YN V P I IL LL+ S
Sbjct: 281 ITTETIYNCVAAPPPDAIKKILNTLLSTS 309
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 45/67 (67%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K+ +GLAL DI+T +S V +LE+ +++ + +++IE+R+++G +E IQ SA+
Sbjct: 318 INTLKVAQGLALADIITALSEEVMKLEVKPQVMITWLDTLAEIEHRVSSGANEAIQTSAV 377
Query: 516 IAAFNSA 522
+ A +
Sbjct: 378 VGAIRNG 384
>gi|342183622|emb|CCC93102.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 290
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 119/163 (73%), Gaps = 13/163 (7%)
Query: 299 RFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI 358
R +D +PHLLFYGPPGTGKTTTI A A LY K + A VLE+NASDDRGI +VR+QI
Sbjct: 44 RLMDSGNMPHLLFYGPPGTGKTTTIKASAHYLYGKERIRANVLEMNASDDRGIDVVRNQI 103
Query: 359 FQFAST---------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+FAST KT SS+KL+ILDEAD M++DAQ ALRRIIEK+T NVRFCI+CN
Sbjct: 104 REFASTSSVFFNSASKTSAMSSFKLVILDEADQMSSDAQAALRRIIEKYTRNVRFCIVCN 163
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY----DDISFFN 448
+++KI PA+QSRCTRFRF P+ + ++ RL + + I F N
Sbjct: 164 HINKIIPALQSRCTRFRFAPVKKAAMLPRLAFIAQEESIPFTN 206
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 125/262 (47%), Gaps = 71/262 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP+TL E+V+H++I+ T + L+D M + + GT + + A
Sbjct: 21 VEKYRPATLSEVVAHEEILETTQ----RLMD-SGNMPHLLFYGPPGTGKTTTIKASAHYL 75
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST---------KTMHKSSYKLIILDEAD 212
+ R + VLE+NASDDRGI +VR+QI +FAST KT SS+KL+ILDEAD
Sbjct: 76 YGKERIRANVLEMNASDDRGIDVVRNQIREFASTSSVFFNSASKTSAMSSFKLVILDEAD 135
Query: 213 AMTNDAQNALRR------------------------------------------------ 224
M++DAQ ALRR
Sbjct: 136 QMSSDAQAALRRIIEKYTRNVRFCIVCNHINKIIPALQSRCTRFRFAPVKKAAMLPRLAF 195
Query: 225 -----KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEI 279
+P T DG A LS+GDMR+ LN LQ++A + E+ E++VY + G PT ++
Sbjct: 196 IAQEESIPFTNDGLVAAFRLSNGDMRRCLNTLQASAMS-TGEITEESVYRTTGNPTPADV 254
Query: 280 TNILRWLLNESMDLCYKINRFI 301
++ +L S D NR +
Sbjct: 255 RGLVEEML--SSDYATSWNRVL 274
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCI+CN+++KI PA+QSRCTRFRF P+ + ++ RL ++ ++E + T DG
Sbjct: 149 IEKYTRNVRFCIVCNHINKIIPALQSRCTRFRFAPVKKAAMLPRLAFIAQEESIPFTNDG 208
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF 96
A LS+GDMR+ LN LQ++A + E+ E++++
Sbjct: 209 LVAAFRLSNGDMRRCLNTLQASAMS-TGEITEESVY 243
>gi|385301010|gb|EIF45243.1| rfc3p [Dekkera bruxellensis AWRI1499]
Length = 330
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 94/144 (65%), Positives = 111/144 (77%), Gaps = 1/144 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I +F + +PHLLFYGPPG+GKT+TI+A AR++Y K + MVLELNASDDRGI VRD
Sbjct: 34 IRKFAQDGRIPHLLFYGPPGSGKTSTIIALAREIYGK-NYRNMVLELNASDDRGIDXVRD 92
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+ + S +KL+ILDEADAMTN AQNALRRIIEK+T N RFCI+ NY KI P
Sbjct: 93 QIKNFASTRQIFSSGFKLVILDEADAMTNTAQNALRRIIEKYTKNTRFCILANYAHKINP 152
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLD 440
A+ SRCTRFRF PL S I R+D
Sbjct: 153 ALMSRCTRFRFSPLAISAIEERVD 176
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 103/195 (52%), Gaps = 30/195 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY KI PA+ SRCTRFRF PL S I R+D VI++EK+ +
Sbjct: 131 IEKYTKNTRFCILANYAHKINPALMSRCTRFRFSPLAISAIEERVDTVIKEEKLKIEKXA 190
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA---HADEVNEDTIFTL------------------- 98
+K ++ LS GDMRK LN+LQ+ A A D + D I+
Sbjct: 191 EKCLVALSKGDMRKALNVLQACAAALDKPEDTIXVDMIYECVGAPRPKSIEVILNAIMER 250
Query: 99 -------LVSRVEKYRPSTLDELV-SHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+++++ K L +L+ DI++ E+ + ++ + DIEY ++ G S
Sbjct: 251 DWTDSYSVMNKIRKTEGLALIDLIEGFMDILAKYELKPLTRIKMIQGLGDIEYGISKGGS 310
Query: 151 EKIQLSALIAAFNSA 165
+KIQ +A+I +A
Sbjct: 311 DKIQSTAVIGCIKNA 325
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 73/123 (59%), Gaps = 7/123 (5%)
Query: 103 VEKYRPSTLDELVSHQDIISTI-EIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
VEKYRP LD++ Q+ I TI + + + +L + G+ + + AL
Sbjct: 13 VEKYRPQNLDQVYGQQETIQTIRKFAQDGRIPHLL------FYGPPGSGKTSTIIALARE 66
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ VLELNASDDRGI VRDQI FAST+ + S +KL+ILDEADAMTN AQNA
Sbjct: 67 IYGKNYRNMVLELNASDDRGIDXVRDQIKNFASTRQIFSSGFKLVILDEADAMTNTAQNA 126
Query: 222 LRR 224
LRR
Sbjct: 127 LRR 129
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 232 GKKAIIDLSDGDMRKVLNILQSAATA---HADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
+K ++ LS GDMRK LN+LQ+ A A D + D +Y VG P I IL ++
Sbjct: 190 AEKCLVALSKGDMRKALNVLQACAAALDKPEDTIXVDMIYECVGAPRPKSIEVILNAIME 249
Query: 289 ESMDLCYKINRFIDENE 305
Y + I + E
Sbjct: 250 RDWTDSYSVMNKIRKTE 266
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y + +I+ +GLAL D++ ++ + E+ + ++ + DIEY ++ G S+KIQ
Sbjct: 256 YSVMNKIRKTEGLALIDLIEGFMDILAKYELKPLTRIKMIQGLGDIEYGISKGGSDKIQS 315
Query: 513 SALIAAFNSA 522
+A+I +A
Sbjct: 316 TAVIGCIKNA 325
>gi|323307584|gb|EGA60853.1| Rfc3p [Saccharomyces cerevisiae FostersO]
Length = 201
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 94/158 (59%), Positives = 118/158 (74%), Gaps = 8/158 (5%)
Query: 289 ESMDLCYKIN-------RFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVL 341
E++D Y N +F+DE +LPHLLFYGPPGTGKT+TI+A AR++Y K ++ MVL
Sbjct: 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVL 80
Query: 342 ELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
ELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNALRR+IE++T N
Sbjct: 81 ELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKN 140
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RFC++ NY K+ PA+ SRCTRFRF PL I R+
Sbjct: 141 TRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRI 178
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TLDE+ ++I+T+ VD K+ + + GT + + AL
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVR----KFVDEG-KLPHLLFYGPPGTGKTSTIVALAREI 70
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
VLELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNAL
Sbjct: 71 YGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNAL 130
Query: 223 RR 224
RR
Sbjct: 131 RR 132
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 46/65 (70%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T N RFC++ NY K+TPA+ SRCTRFRF PL I R+ V+ EK+ ++P+
Sbjct: 134 IERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNA 193
Query: 61 KKAII 65
+KA+I
Sbjct: 194 EKALI 198
>gi|207341952|gb|EDZ69867.1| YNL290Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 181
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 94/158 (59%), Positives = 118/158 (74%), Gaps = 8/158 (5%)
Query: 289 ESMDLCYKIN-------RFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVL 341
E++D Y N +F+DE +LPHLLFYGPPGTGKT+TI+A AR++Y K ++ MVL
Sbjct: 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVL 80
Query: 342 ELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
ELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNALRR+IE++T N
Sbjct: 81 ELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKN 140
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RFC++ NY K+ PA+ SRCTRFRF PL I R+
Sbjct: 141 TRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRI 178
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 74/122 (60%), Gaps = 5/122 (4%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TLDE+ ++I+T+ VD K+ + + GT + + AL
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVR----KFVDEG-KLPHLLFYGPPGTGKTSTIVALAREI 70
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
VLELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNAL
Sbjct: 71 YGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNAL 130
Query: 223 RR 224
RR
Sbjct: 131 RR 132
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRL 45
IE++T N RFC++ NY K+TPA+ SRCTRFRF PL I R+
Sbjct: 134 IERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRI 178
>gi|121719320|ref|XP_001276359.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
clavatus NRRL 1]
gi|119404557|gb|EAW14933.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
clavatus NRRL 1]
Length = 395
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 96/161 (59%), Positives = 115/161 (71%), Gaps = 11/161 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F++ N LPHLL YGPPGTGKT+TILA AR++Y + MVLELNASDDRGI
Sbjct: 64 DILTTINKFVEANRLPHLLLYGPPGTGKTSTILALARRIYGTSNMRQMVLELNASDDRGI 123
Query: 352 GIVRDQIFQFASTKTMHK-----------SSYKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VR+QI FASTK + +SYKLIILDEADAMT+ AQ ALRRI+EK+T
Sbjct: 124 DVVREQIKTFASTKQIFSMAPSASTGSSLASYKLIILDEADAMTSTAQMALRRIMEKYTA 183
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
N RFCII NY K+ PA+ SRCTRFRF PL I S +D+
Sbjct: 184 NTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVDH 224
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 107/224 (47%), Gaps = 55/224 (24%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I S +D+VIE+E+V + P+
Sbjct: 178 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVDHVIEKEQVQIQPEA 237
Query: 61 KKAIIDLSDGDMRKVLNILQSA----------------ATAHADEVNEDTIFTLLVSRVE 104
+++ LS GDMR+ LN+LQ+ A + + TI+ + +
Sbjct: 238 VSSLVKLSKGDMRRALNVLQACHASSKPLPMKNATKDEPPAEVETITNATIYDCIAAP-- 295
Query: 105 KYRPSTLDE----LVSHQDIIST----------------------------IEIPESMLV 132
PS + E L+S D+ S +E+P +
Sbjct: 296 --HPSDIQEIMTTLLSTSDVTSCLNTLTTIKANKGLALADILSALAEQLQELEVPAQTRI 353
Query: 133 DLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNA 176
+ ++DIEYRLAAG SE +Q + R+ E++E A
Sbjct: 354 TWLEGLADIEYRLAAGGSETMQTGGTVGVV---RNGCELMEATA 394
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 122/272 (44%), Gaps = 92/272 (33%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP+TLD++ HQDI++TI + ++ + + + L G + S ++A
Sbjct: 48 VEKYRPNTLDDVSGHQDILTTI--------NKFVEANRLPHLLLYGPPGTGKTSTILALA 99
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-----------SSYKLII 207
+ ++ + VLELNASDDRGI +VR+QI FASTK + +SYKLII
Sbjct: 100 RRIYGTSNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSASTGSSLASYKLII 159
Query: 208 LDEADAMTNDAQNALRR------------------------------------------- 224
LDEADAMT+ AQ ALRR
Sbjct: 160 LDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIR 219
Query: 225 ----------KLPVTPDGKKAIIDLSDGDMRKVLNILQSA----------------ATAH 258
++ + P+ +++ LS GDMR+ LN+LQ+ A
Sbjct: 220 SLVDHVIEKEQVQIQPEAVSSLVKLSKGDMRRALNVLQACHASSKPLPMKNATKDEPPAE 279
Query: 259 ADEVNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ + T+Y+ + P ++I I+ LL+ S
Sbjct: 280 VETITNATIYDCIAAPHPSDIQEIMTTLLSTS 311
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 459 IKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 518
IK KGLAL DIL+ ++ + LE+P + + ++DIEYRLAAG SE +Q +
Sbjct: 323 IKANKGLALADILSALAEQLQELEVPAQTRITWLEGLADIEYRLAAGGSETMQTGGTVGV 382
Query: 519 FNSARDKLEA 528
+ + +EA
Sbjct: 383 VRNGCELMEA 392
>gi|281209635|gb|EFA83803.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 347
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 96/149 (64%), Positives = 117/149 (78%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ +++ I +N LPHLLFYGPPGTGKT+TI A ARKLY ++ ++ MVLELNASDDRGI
Sbjct: 39 DITDTVSKLIAKNSLPHLLFYGPPGTGKTSTIQAIARKLYGES-YSRMVLELNASDDRGI 97
Query: 352 GIVRDQIFQFASTKTMHKS-SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR+QI FAS+ M + YKLIILDEAD+MTN AQ ALRR+IEK+T RFC+ICNY
Sbjct: 98 DVVREQIKTFASSMFMFSNYPYKLIILDEADSMTNPAQTALRRVIEKYTRTTRFCMICNY 157
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+SKI PA+QSRCTRFRF PL S I R+
Sbjct: 158 VSKILPALQSRCTRFRFSPLPRSAITKRM 186
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 116/198 (58%), Gaps = 30/198 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T RFC+ICNY+SKI PA+QSRCTRFRF PL S I R+ +IE E + V D
Sbjct: 142 IEKYTRTTRFCMICNYVSKILPALQSRCTRFRFSPLPRSAITKRMKEIIECESLKVNDDA 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA--HADEVNEDTIFTL----LVSRVEKYRPSTLDEL 114
+II LS+GDMRK LNILQSA+ + +++DTI+ L + ++K +L++
Sbjct: 202 LNSIITLSEGDMRKCLNILQSASMSIDVGTTIDKDTIYRCTGQPLPTDIKKILMWSLNQS 261
Query: 115 ----------------VSHQDIIS-----TIEIPE---SMLVDLVLKMSDIEYRLAAGTS 150
+S DII T+++P L +LV ++SDIEY L+ G S
Sbjct: 262 YIEALNNILELKKEKGLSLTDIIKEIHFMTLKVPNIGGPALWNLVKELSDIEYNLSFGAS 321
Query: 151 EKIQLSALIAAFNSARDK 168
EK+QL +++ +F RD+
Sbjct: 322 EKLQLGSMLGSFQVIRDE 339
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 121/258 (46%), Gaps = 65/258 (25%)
Query: 91 NEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAG 148
+++ +F + VEKYRP L L++H+DI T+ I ++ L L+ + G
Sbjct: 11 SKEQLFHDRLPWVEKYRPKDLSGLIAHEDITDTVSKLIAKNSLPHLL-------FYGPPG 63
Query: 149 TSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS-SYKLII 207
T + + A+ VLELNASDDRGI +VR+QI FAS+ M + YKLII
Sbjct: 64 TGKTSTIQAIARKLYGESYSRMVLELNASDDRGIDVVREQIKTFASSMFMFSNYPYKLII 123
Query: 208 LDEADAMTNDAQNALRR------------------------------------------- 224
LDEAD+MTN AQ ALRR
Sbjct: 124 LDEADSMTNPAQTALRRVIEKYTRTTRFCMICNYVSKILPALQSRCTRFRFSPLPRSAIT 183
Query: 225 ----------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATA--HADEVNEDTVYNSVG 272
L V D +II LS+GDMRK LNILQSA+ + +++DT+Y G
Sbjct: 184 KRMKEIIECESLKVNDDALNSIITLSEGDMRKCLNILQSASMSIDVGTTIDKDTIYRCTG 243
Query: 273 YPTKTEITNILRWLLNES 290
P T+I IL W LN+S
Sbjct: 244 QPLPTDIKKILMWSLNQS 261
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 10/87 (11%)
Query: 449 IIIW-----YIK----IQEIKIEKGLALTDILTEISLLVHRL-EIPESMLVDLVLKMSDI 498
I++W YI+ I E+K EKGL+LTDI+ EI + ++ I L +LV ++SDI
Sbjct: 253 ILMWSLNQSYIEALNNILELKKEKGLSLTDIIKEIHFMTLKVPNIGGPALWNLVKELSDI 312
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARDK 525
EY L+ G SEK+QL +++ +F RD+
Sbjct: 313 EYNLSFGASEKLQLGSMLGSFQVIRDE 339
>gi|164656737|ref|XP_001729496.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
gi|159103387|gb|EDP42282.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
Length = 349
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 94/147 (63%), Positives = 115/147 (78%), Gaps = 4/147 (2%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +FI N+LPHLLFYGPPGTGKT+TI+A A +LY A F VLELNASDDRGI +VR
Sbjct: 47 LEKFITANQLPHLLFYGPPGTGKTSTIMALAARLY-GASFRNNVLELNASDDRGIDVVRG 105
Query: 357 QIFQFASTKTM---HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
QI FAST+ + K ++KL+ILDEADAMT AQ ALRR++E++T NVRFCIICNY++K
Sbjct: 106 QIKAFASTRNVFSTQKDTFKLVILDEADAMTQAAQAALRRVMEQYTRNVRFCIICNYVNK 165
Query: 414 IPPAIQSRCTRFRFGPLDSSLIMSRLD 440
I PAIQSRCTRFRF PLD + ++D
Sbjct: 166 IIPAIQSRCTRFRFSPLDRVQVERQID 192
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 109/193 (56%), Gaps = 30/193 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E++T NVRFCIICNY++KI PAIQSRCTRFRF PLD + ++D VI E +
Sbjct: 147 MEQYTRNVRFCIICNYVNKIIPAIQSRCTRFRFSPLDRVQVERQIDSVIAAEHCQIDAKA 206
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF------------------------ 96
K AI+ L GDMR+ LNILQ+ A+ D ++ED+++
Sbjct: 207 KHAILQLCQGDMRRALNILQACHAAN-DMIDEDSVYLCTGHPHPQDIETAFQAMLEQEFT 265
Query: 97 ----TLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
T+ RVEK T D L ++ ++E+P V L+ M+ IEYRL+ SE+
Sbjct: 266 TAFQTIQTLRVEKGLALT-DLLTGMHALVLSLELPPHARVFLLDHMAQIEYRLSTNASER 324
Query: 153 IQLSALIAAFNSA 165
+QLSAL+A+ +A
Sbjct: 325 VQLSALLASVKAA 337
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 121/256 (47%), Gaps = 66/256 (25%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
L+ VEKYRPS+LD+++SHQ I +T+E I + L L+ + GT + +
Sbjct: 22 LLPWVEKYRPSSLDQIMSHQHITATLEKFITANQLPHLL-------FYGPPGTGKTSTIM 74
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTM---HKSSYKLIILDEADA 213
AL A A + VLELNASDDRGI +VR QI FAST+ + K ++KL+ILDEADA
Sbjct: 75 ALAARLYGASFRNNVLELNASDDRGIDVVRGQIKAFASTRNVFSTQKDTFKLVILDEADA 134
Query: 214 MTNDAQ--------------------NALRRKLP-------------------------- 227
MT AQ N + + +P
Sbjct: 135 MTQAAQAALRRVMEQYTRNVRFCIICNYVNKIIPAIQSRCTRFRFSPLDRVQVERQIDSV 194
Query: 228 -------VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEIT 280
+ K AI+ L GDMR+ LNILQ+ A+ D ++ED+VY G+P +I
Sbjct: 195 IAAEHCQIDAKAKHAILQLCQGDMRRALNILQACHAAN-DMIDEDSVYLCTGHPHPQDIE 253
Query: 281 NILRWLLNESMDLCYK 296
+ +L + ++
Sbjct: 254 TAFQAMLEQEFTTAFQ 269
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
+ IQ +++EKGLALTD+LT + LV LE+P V L+ M+ IEYRL+ SE++QL
Sbjct: 268 FQTIQTLRVEKGLALTDLLTGMHALVLSLELPPHARVFLLDHMAQIEYRLSTNASERVQL 327
Query: 513 SALIAAFNSARDKLEAPP 530
SAL+A+ +A + PP
Sbjct: 328 SALLASVKAAVELAHTPP 345
>gi|310795633|gb|EFQ31094.1| replication factor C [Glomerella graminicola M1.001]
Length = 393
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 95/153 (62%), Positives = 109/153 (71%), Gaps = 14/153 (9%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 61 DILVTINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGAENMRQMVLELNASDDRGI 120
Query: 352 GIVRDQIFQFASTKTMHK--------------SSYKLIILDEADAMTNDAQNALRRIIEK 397
+VR+QI FASTK + +SYKLIILDEADAMTN AQ ALRRI+EK
Sbjct: 121 DVVREQIKTFASTKQIFTLGPSAKSGGGGGGMASYKLIILDEADAMTNTAQMALRRIMEK 180
Query: 398 FTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
+T N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 181 YTVNTRFCIIANYSHKLSPALLSRCTRFRFSPL 213
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 103/210 (49%), Gaps = 45/210 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VIE+E V + P+
Sbjct: 178 MEKYTVNTRFCIIANYSHKLSPALLSRCTRFRFSPLKERDIRVLVDKVIEEEHVKIMPEA 237
Query: 61 KKAIIDLSDGDMRKVLNILQSA-------------ATAHADEVNE----DTIFTLLVSRV 103
+A++ LS GDMR+ LN+LQ+ A D V E +TI+ + +
Sbjct: 238 TEALVKLSKGDMRRALNVLQACHASSTPLQPKNAPKVAEGDIVREMISTETIYNCIAAPQ 297
Query: 104 EKYRPSTLDELVSHQDIIS----------------------------TIEIPESMLVDLV 135
LD L+S D+ S T+E+ +++ +
Sbjct: 298 PDAIQEILDVLLSTTDVTSCLTTINTLKVARGLALADIITALAEQLATLEVKPEIMIKWL 357
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSA 165
++DIE+R+A+G SE +Q A++ S
Sbjct: 358 DGLADIEHRVASGGSETVQTGAVVGVIRSG 387
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 78/139 (56%), Gaps = 24/139 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +L ++ HQDI+ TI + + L L+L GT + + AL
Sbjct: 45 VEKYRPVSLADVSGHQDILVTINKFVDSNRLPHLLLYGP-------PGTGKTSTILALAR 97
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK--------------SSYKL 205
A + + VLELNASDDRGI +VR+QI FASTK + +SYKL
Sbjct: 98 RIYGAENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGPSAKSGGGGGGMASYKL 157
Query: 206 IILDEADAMTNDAQNALRR 224
IILDEADAMTN AQ ALRR
Sbjct: 158 IILDEADAMTNTAQMALRR 176
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 42/67 (62%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K+ +GLAL DI+T ++ + LE+ +++ + ++DIE+R+A+G SE +Q A+
Sbjct: 321 INTLKVARGLALADIITALAEQLATLEVKPEIMIKWLDGLADIEHRVASGGSETVQTGAV 380
Query: 516 IAAFNSA 522
+ S
Sbjct: 381 VGVIRSG 387
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSA-------------ATAHADEVNE----DTVYNS 270
+ P+ +A++ LS GDMR+ LN+LQ+ A D V E +T+YN
Sbjct: 233 IMPEATEALVKLSKGDMRRALNVLQACHASSTPLQPKNAPKVAEGDIVREMISTETIYNC 292
Query: 271 VGYPTKTEITNILRWLLN 288
+ P I IL LL+
Sbjct: 293 IAAPQPDAIQEILDVLLS 310
>gi|380489807|emb|CCF36452.1| replication factor C [Colletotrichum higginsianum]
Length = 392
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/152 (62%), Positives = 109/152 (71%), Gaps = 13/152 (8%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 61 DILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGAENMRQMVLELNASDDRGI 120
Query: 352 GIVRDQIFQFASTKTMHK-------------SSYKLIILDEADAMTNDAQNALRRIIEKF 398
+VR+QI FASTK + +SYKLIILDEADAMTN AQ ALRRI+EK+
Sbjct: 121 DVVREQIKTFASTKQIFTLGPSAKSGGGGSMASYKLIILDEADAMTNTAQMALRRIMEKY 180
Query: 399 TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
T N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 181 TVNTRFCIIANYSHKLSPALLSRCTRFRFSPL 212
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 102/205 (49%), Gaps = 45/205 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D V+E+E V + P+
Sbjct: 177 MEKYTVNTRFCIIANYSHKLSPALLSRCTRFRFSPLKERDIRVLVDKVVEEEHVKILPEA 236
Query: 61 KKAIIDLSDGDMRKVLNILQSA-------------ATAHADEVNE----DTIFTLLVSRV 103
A++ LS GDMR+ LN+LQ+ TA +D V E +TI+ + +
Sbjct: 237 TDALVKLSKGDMRRALNVLQACHASSTPLQAKGAPKTAESDIVREMISTETIYNCIAAPQ 296
Query: 104 EKYRPSTLDELVSHQDIIS----------------------------TIEIPESMLVDLV 135
LD L+S D+ S T+E+ +++ +
Sbjct: 297 PDAVREILDVLLSTTDVTSCLTTINTLKVARGLALADIITALAEQLATLEVKPEIMIQWL 356
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIA 160
++DIE+R+A G SE +Q A++
Sbjct: 357 DGLADIEHRVAGGGSEAVQTGAVVG 381
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 79/138 (57%), Gaps = 23/138 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +L ++ HQDI++TI + + L L+L GT + + AL
Sbjct: 45 VEKYRPVSLADVSGHQDILATINKFVDSNRLPHLLLYGP-------PGTGKTSTILALAR 97
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK-------------SSYKLI 206
A + + VLELNASDDRGI +VR+QI FASTK + +SYKLI
Sbjct: 98 RIYGAENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGPSAKSGGGGSMASYKLI 157
Query: 207 ILDEADAMTNDAQNALRR 224
ILDEADAMTN AQ ALRR
Sbjct: 158 ILDEADAMTNTAQMALRR 175
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 40/62 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K+ +GLAL DI+T ++ + LE+ +++ + ++DIE+R+A G SE +Q A+
Sbjct: 320 INTLKVARGLALADIITALAEQLATLEVKPEIMIQWLDGLADIEHRVAGGGSEAVQTGAV 379
Query: 516 IA 517
+
Sbjct: 380 VG 381
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 17/78 (21%)
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSA-------------ATAHADEVNE----DTVYNS 270
+ P+ A++ LS GDMR+ LN+LQ+ TA +D V E +T+YN
Sbjct: 232 ILPEATDALVKLSKGDMRRALNVLQACHASSTPLQAKGAPKTAESDIVREMISTETIYNC 291
Query: 271 VGYPTKTEITNILRWLLN 288
+ P + IL LL+
Sbjct: 292 IAAPQPDAVREILDVLLS 309
>gi|50513623|pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/158 (58%), Positives = 118/158 (74%), Gaps = 8/158 (5%)
Query: 289 ESMDLCYKIN-------RFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVL 341
E++D Y N +F+DE +LPHLLFYGPPGTGKT+TI+A AR++Y K ++ MVL
Sbjct: 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVL 80
Query: 342 ELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
ELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNALRR+IE++T N
Sbjct: 81 ELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKN 140
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RFC++ NY K+ PA+ S+CTRFRF PL I R+
Sbjct: 141 TRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRI 178
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 124/255 (48%), Gaps = 63/255 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TLDE+ ++I+T+ VD K+ + + GT + + AL
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVR----KFVDEG-KLPHLLFYGPPGTGKTSTIVALAREI 70
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
VLELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNAL
Sbjct: 71 YGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNAL 130
Query: 223 RR-----------------------------------------------------KLPVT 229
RR KL ++
Sbjct: 131 RRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLS 190
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTVYNSVGYPTKTEITNILRW 285
P+ +KA+I+LS+GDMR+VLN+LQS DE+++D +Y G P +++ +L+
Sbjct: 191 PNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKS 250
Query: 286 LLNESMDLC-YKINR 299
+L + Y +N+
Sbjct: 251 ILEDDWGTAHYTLNK 265
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 113/201 (56%), Gaps = 40/201 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T N RFC++ NY K+TPA+ S+CTRFRF PL I R+ V+ EK+ ++P+
Sbjct: 134 IERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNA 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTIFTLLVSRVEKYRPS------- 109
+KA+I+LS+GDMR+VLN+LQS DE+++D I+ + RPS
Sbjct: 194 EKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAP----RPSDLKAVLK 249
Query: 110 ------------TLDELVSHQ-----DIISTI-------EIP-ESMLVDLVLKMSDIEYR 144
TL+++ S + D+I I E+ E V L+ K++DIEY
Sbjct: 250 SILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYS 309
Query: 145 LAAGTSEKIQLSALIAAFNSA 165
++ G +++IQ SA+I A ++
Sbjct: 310 ISKGGNDQIQGSAVIGAIKAS 330
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIP-ESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
+ + +++ KGLAL D++ I ++ E+ E V L+ K++DIEY ++ G +++IQ
Sbjct: 260 HYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQ 319
Query: 512 LSALIAAFNSA 522
SA+I A ++
Sbjct: 320 GSAVIGAIKAS 330
>gi|408397619|gb|EKJ76759.1| hypothetical protein FPSE_02945 [Fusarium pseudograminearum CS3096]
Length = 390
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/150 (62%), Positives = 111/150 (74%), Gaps = 11/150 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+FI++N LPHLL YGPPGTGKT+TILA AR++Y A MVLELNASDDRGI
Sbjct: 61 DILATINKFIEQNRLPHLLLYGPPGTGKTSTILALARRIYGAANMRQMVLELNASDDRGI 120
Query: 352 GIVRDQIFQFASTKTMHK-----------SSYKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VR+QI FASTK + + +KLIILDEADAMT+ AQ ALRRI+EK+TT
Sbjct: 121 DVVREQIKTFASTKQIFSLGGASRSGNAMAGFKLIILDEADAMTSTAQMALRRIMEKYTT 180
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 181 NTRFCIIANYSHKLSPALLSRCTRFRFSPL 210
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 103/210 (49%), Gaps = 45/210 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+TTN RFCII NY K++PA+ SRCTRFRF PL I +D V+E+E V V +
Sbjct: 175 MEKYTTNTRFCIIANYSHKLSPALLSRCTRFRFSPLKEGDIRVLVDKVVEEENVQVKGEA 234
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA------------DEVNEDTIFT-LLVSRVEKYR 107
A++ LS GDMR+ LN+LQ+ + E+ + I T + + +
Sbjct: 235 IDALVKLSKGDMRRALNVLQACHASSTPLRAKDAPKVPDSEIQRENITTETIYNCIAAPP 294
Query: 108 PSTLDELVSH-------------------------QDIIST-------IEIPESMLVDLV 135
P + E+VS DII+ +E+ +++ +
Sbjct: 295 PDAIKEIVSTLLKTSDVTSCLNTINALKVQRGLALADIITALSEELVKLEVSPEVMITWL 354
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSA 165
+++IE+R+A+G+SE IQ A++ S
Sbjct: 355 DGLANIEHRVASGSSESIQTGAVVGVVRSG 384
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 118/272 (43%), Gaps = 91/272 (33%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+TLD++ HQDI++TI I ++ L L+L GT + + AL
Sbjct: 45 VEKYRPTTLDDVSGHQDILATINKFIEQNRLPHLLLYG-------PPGTGKTSTILALAR 97
Query: 161 A-FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-----------SSYKLIIL 208
+ +A + VLELNASDDRGI +VR+QI FASTK + + +KLIIL
Sbjct: 98 RIYGAANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGGASRSGNAMAGFKLIIL 157
Query: 209 DEADAMTNDAQNALRRKL---------------------------------PVTPDGKKA 235
DEADAMT+ AQ ALRR + P+ +
Sbjct: 158 DEADAMTSTAQMALRRIMEKYTTNTRFCIIANYSHKLSPALLSRCTRFRFSPLKEGDIRV 217
Query: 236 IID--------------------LSDGDMRKVLNILQSAATA-----------------H 258
++D LS GDMR+ LN+LQ+ +
Sbjct: 218 LVDKVVEEENVQVKGEAIDALVKLSKGDMRRALNVLQACHASSTPLRAKDAPKVPDSEIQ 277
Query: 259 ADEVNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ + +T+YN + P I I+ LL S
Sbjct: 278 RENITTETIYNCIAAPPPDAIKEIVSTLLKTS 309
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 45/67 (67%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K+++GLAL DI+T +S + +LE+ +++ + +++IE+R+A+G+SE IQ A+
Sbjct: 318 INALKVQRGLALADIITALSEELVKLEVSPEVMITWLDGLANIEHRVASGSSESIQTGAV 377
Query: 516 IAAFNSA 522
+ S
Sbjct: 378 VGVVRSG 384
>gi|449464168|ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
gi|449499057|ref|XP_004160708.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
Length = 363
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/153 (62%), Positives = 117/153 (76%), Gaps = 4/153 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I++ EN LPHLL YGPPGTGKT+TILA ARKLY ++ M+LELNASDDRGI
Sbjct: 59 DIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYG-TNYHNMILELNASDDRGI 117
Query: 352 GIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
+VR QI FAST++ K+S KL++LDEADAMT DAQ ALRR+IEK+T N RF +IC
Sbjct: 118 DVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALIC 177
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
N+++KI PA+QSRCTRFRF PLD+ + RL Y
Sbjct: 178 NHVNKIIPALQSRCTRFRFAPLDNFHVTERLRY 210
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 115/196 (58%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RF +ICN+++KI PA+QSRCTRFRF PLD+ + RL YVIE E+++VT G
Sbjct: 164 IEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTEGG 223
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI----------------FTLL----- 99
A++ L GDMRK LNILQS A + + E+ + F LL
Sbjct: 224 LAALVRLCTGDMRKALNILQSTHMA-SQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFS 282
Query: 100 -----VSRVEKYRPSTLDELVSHQDI-ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+S ++ + L ++V + + IE+P ++ V L+ ++DIEYR+ G ++K+
Sbjct: 283 DSFKRISEIKTRKGLALVDIVREVTLFVFKIEMPSNIRVQLINDLADIEYRMTFGCNDKL 342
Query: 154 QLSALIAAFNSARDKL 169
QL +LI++F AR L
Sbjct: 343 QLGSLISSFTGARSAL 358
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 115/252 (45%), Gaps = 66/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEK+RP +L ++ +H+DI+ TI+ E+ L L+L GT + + A+
Sbjct: 43 VEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGP-------PGTGKTSTILAVAR 95
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTND 217
+LELNASDDRGI +VR QI FAST++ K+S KL++LDEADAMT D
Sbjct: 96 KLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKD 155
Query: 218 AQNALRR----------------------------------------------------- 224
AQ ALRR
Sbjct: 156 AQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAE 215
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
+L VT G A++ L GDMRK LNILQS A + + E+ VY G P +I I
Sbjct: 216 RLDVTEGGLAALVRLCTGDMRKALNILQSTHMA-SQHITEEAVYLCTGNPMPKDIEQISF 274
Query: 285 WLLNESMDLCYK 296
WLLNE +K
Sbjct: 275 WLLNEPFSDSFK 286
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 53/74 (71%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
+ +I EIK KGLAL DI+ E++L V ++E+P ++ V L+ ++DIEYR+ G ++K+QL
Sbjct: 285 FKRISEIKTRKGLALVDIVREVTLFVFKIEMPSNIRVQLINDLADIEYRMTFGCNDKLQL 344
Query: 513 SALIAAFNSARDKL 526
+LI++F AR L
Sbjct: 345 GSLISSFTGARSAL 358
>gi|46123299|ref|XP_386203.1| hypothetical protein FG06027.1 [Gibberella zeae PH-1]
Length = 390
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/150 (62%), Positives = 111/150 (74%), Gaps = 11/150 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+FI++N LPHLL YGPPGTGKT+TILA AR++Y A MVLELNASDDRGI
Sbjct: 61 DILATINKFIEQNRLPHLLLYGPPGTGKTSTILALARRIYGAANMRQMVLELNASDDRGI 120
Query: 352 GIVRDQIFQFASTKTMHK-----------SSYKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VR+QI FASTK + + +KLIILDEADAMT+ AQ ALRRI+EK+TT
Sbjct: 121 DVVREQIKTFASTKQIFSLGGASRSGNGMAGFKLIILDEADAMTSTAQMALRRIMEKYTT 180
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 181 NTRFCIIANYSHKLSPALLSRCTRFRFSPL 210
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 103/210 (49%), Gaps = 45/210 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+TTN RFCII NY K++PA+ SRCTRFRF PL I +D V+E+E V V +
Sbjct: 175 MEKYTTNTRFCIIANYSHKLSPALLSRCTRFRFSPLKEGDIRVLVDKVVEEENVQVKGEA 234
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA------------DEVNEDTIFT-LLVSRVEKYR 107
A++ LS GDMR+ LN+LQ+ + E+ + I T + + +
Sbjct: 235 IDALVKLSKGDMRRALNVLQACHASSTPLRAKDAPKVPDSEIQRENITTETIYNCIAAPP 294
Query: 108 PSTLDELVSH-------------------------QDIIST-------IEIPESMLVDLV 135
P + E+VS DII+ +E+ +++ +
Sbjct: 295 PDAIKEIVSTLLKTSDVTSCLNTINALKVQRGLALADIITALSEELVKLEVSPEVMITWL 354
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSA 165
+++IE+R+A+G+SE IQ A++ S
Sbjct: 355 DGLANIEHRVASGSSESIQTGAVVGVVRSG 384
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 118/272 (43%), Gaps = 91/272 (33%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+TLD++ HQDI++TI I ++ L L+L GT + + AL
Sbjct: 45 VEKYRPTTLDDVSGHQDILATINKFIEQNRLPHLLLYG-------PPGTGKTSTILALAR 97
Query: 161 A-FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-----------SSYKLIIL 208
+ +A + VLELNASDDRGI +VR+QI FASTK + + +KLIIL
Sbjct: 98 RIYGAANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGGASRSGNGMAGFKLIIL 157
Query: 209 DEADAMTNDAQNALRRKL---------------------------------PVTPDGKKA 235
DEADAMT+ AQ ALRR + P+ +
Sbjct: 158 DEADAMTSTAQMALRRIMEKYTTNTRFCIIANYSHKLSPALLSRCTRFRFSPLKEGDIRV 217
Query: 236 IID--------------------LSDGDMRKVLNILQSAATA-----------------H 258
++D LS GDMR+ LN+LQ+ +
Sbjct: 218 LVDKVVEEENVQVKGEAIDALVKLSKGDMRRALNVLQACHASSTPLRAKDAPKVPDSEIQ 277
Query: 259 ADEVNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ + +T+YN + P I I+ LL S
Sbjct: 278 RENITTETIYNCIAAPPPDAIKEIVSTLLKTS 309
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 45/67 (67%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K+++GLAL DI+T +S + +LE+ +++ + +++IE+R+A+G+SE IQ A+
Sbjct: 318 INALKVQRGLALADIITALSEELVKLEVSPEVMITWLDGLANIEHRVASGSSESIQTGAV 377
Query: 516 IAAFNSA 522
+ S
Sbjct: 378 VGVVRSG 384
>gi|50294179|ref|XP_449501.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528815|emb|CAG62477.1| unnamed protein product [Candida glabrata]
Length = 331
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 91/143 (63%), Positives = 112/143 (78%), Gaps = 1/143 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +F+ E +LPHLLFYGPPGTGKT+TI+A A+ +Y K ++ MVLELNASDDRGI +VR+
Sbjct: 33 VKKFVQEGKLPHLLFYGPPGTGKTSTIVALAKDIYGK-NYSNMVLELNASDDRGIDVVRN 91
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+ + +KLIILDEADAMTN AQNALRRIIEK+T N RFCI+ NY KI P
Sbjct: 92 QIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRIIEKYTKNTRFCILANYSHKITP 151
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
A+ SRCTRFRF PL + + R+
Sbjct: 152 ALLSRCTRFRFQPLPNDAVEKRM 174
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 121/251 (48%), Gaps = 65/251 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD++ ++++ T++ + E L L+ + GT + + AL
Sbjct: 12 VEKYRPQTLDDVYGQREVVGTVKKFVQEGKLPHLL-------FYGPPGTGKTSTIVALAK 64
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
VLELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQN
Sbjct: 65 DIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQN 124
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR L
Sbjct: 125 ALRRIIEKYTKNTRFCILANYSHKITPALLSRCTRFRFQPLPNDAVEKRMANVLVHEHLR 184
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQ-SAATAHA--DEVNEDTVYNSVGYPTKTEITNILR 284
++P K+A+++LS+GDMR+VLN+LQ S AT + DE+ ++ +Y G P +I IL+
Sbjct: 185 ISPAAKEALLELSNGDMRRVLNVLQASKATLESPEDEITDEVIYECCGAPRPQDIQTILK 244
Query: 285 WLLNESMDLCY 295
+L + Y
Sbjct: 245 SILEDDWSTAY 255
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 115/196 (58%), Gaps = 31/196 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY KITPA+ SRCTRFRF PL + + R+ V+ E + ++P
Sbjct: 130 IEKYTKNTRFCILANYSHKITPALLSRCTRFRFQPLPNDAVEKRMANVLVHEHLRISPAA 189
Query: 61 KKAIIDLSDGDMRKVLNILQ-SAATAHA--DEVNEDTIF------------TLLVSRVEK 105
K+A+++LS+GDMR+VLN+LQ S AT + DE+ ++ I+ T+L S +E
Sbjct: 190 KEALLELSNGDMRRVLNVLQASKATLESPEDEITDEVIYECCGAPRPQDIQTILKSILED 249
Query: 106 YRPSTLDEL--VSHQDIISTIEIPESML--------------VDLVLKMSDIEYRLAAGT 149
+ D L + + ++ I++ ES++ + L+ ++ DIEY ++ G
Sbjct: 250 DWSTAYDTLTRIRSSNGLALIDLIESIVKILEEYKLKKEETRISLLSQLGDIEYAISKGG 309
Query: 150 SEKIQLSALIAAFNSA 165
++KIQ SA+I A S+
Sbjct: 310 NDKIQSSAVIGAIKSS 325
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIP-ESM 487
P D I+ + DD S Y + I+ GLAL D++ I ++ ++ E
Sbjct: 236 PQDIQTILKSILEDDWS-----TAYDTLTRIRSSNGLALIDLIESIVKILEEYKLKKEET 290
Query: 488 LVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
+ L+ ++ DIEY ++ G ++KIQ SA+I A S+
Sbjct: 291 RISLLSQLGDIEYAISKGGNDKIQSSAVIGAIKSS 325
>gi|406863129|gb|EKD16177.1| activator 1 subunit 3 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 395
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 96/149 (64%), Positives = 111/149 (74%), Gaps = 10/149 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +F+D N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 65 DILATITKFVDTNRLPHLLLYGPPGTGKTSTILALARQIYGSKNMRQMVLELNASDDRGI 124
Query: 352 GIVRDQIFQFASTK---TMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+VR+QI FASTK TM+K+S YKLIILDEADAMT+ AQ ALRRI+EK+T N
Sbjct: 125 DVVREQIKTFASTKQIFTMNKTSTSASMPTYKLIILDEADAMTSTAQMALRRIMEKYTAN 184
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 185 TRFCIIANYTHKLSPALLSRCTRFRFSPL 213
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 45/205 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL + I +D VI +E V +
Sbjct: 178 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDKVITEENVQINESA 237
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIFTLLVSRV 103
A++ LS GDMR+ LN+LQ+ + D + E TI+ + S
Sbjct: 238 TDALVKLSKGDMRRALNVLQACHASSTPLHIKGTPKIAEKDIKRDLITETTIYECIASPH 297
Query: 104 EKYRPSTLDELVSHQDI----------------------------ISTIEIPESMLVDLV 135
+ L+ L+ D+ ++ +++P +++ +
Sbjct: 298 PEDISKILNTLLKTPDVTTCLTMINALKASQGLALADIITALSEELTKLDVPAPVMITWL 357
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIA 160
++++EYRL+ G E +Q A++
Sbjct: 358 DGLAEVEYRLSGGGGEVVQTGAVVG 382
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 84/136 (61%), Gaps = 22/136 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
VEKYRP TL+++ HQDI++TI + VD + + + L G + S ++A
Sbjct: 49 VEKYRPDTLEDVSGHQDILATI----TKFVD----TNRLPHLLLYGPPGTGKTSTILALA 100
Query: 161 --AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK---TMHKSS-------YKLIIL 208
+ S + VLELNASDDRGI +VR+QI FASTK TM+K+S YKLIIL
Sbjct: 101 RQIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTMNKTSTSASMPTYKLIIL 160
Query: 209 DEADAMTNDAQNALRR 224
DEADAMT+ AQ ALRR
Sbjct: 161 DEADAMTSTAQMALRR 176
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 40/62 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K +GLAL DI+T +S + +L++P +++ + ++++EYRL+ G E +Q A+
Sbjct: 321 INALKASQGLALADIITALSEELTKLDVPAPVMITWLDGLAEVEYRLSGGGGEVVQTGAV 380
Query: 516 IA 517
+
Sbjct: 381 VG 382
>gi|169771859|ref|XP_001820399.1| replication factor C subunit 3 [Aspergillus oryzae RIB40]
gi|83768258|dbj|BAE58397.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391874706|gb|EIT83551.1| replication factor C, subunit RFC5 [Aspergillus oryzae 3.042]
Length = 398
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/161 (60%), Positives = 112/161 (69%), Gaps = 12/161 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRF+D N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 62 DILATINRFVDANRLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTKTMHK------------SSYKLIILDEADAMTNDAQNALRRIIEKFT 399
+VR+QI FASTK + +SYKLIILDEADAMT AQ ALRRI+EK+T
Sbjct: 122 DVVREQIKTFASTKQIFSMAPQPTSGGSSLASYKLIILDEADAMTATAQMALRRIMEKYT 181
Query: 400 TNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
N RFCII NY K+ PA+ SRCTRFRF PL I S +D
Sbjct: 182 ANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVD 222
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 111/230 (48%), Gaps = 54/230 (23%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I S +D VIE+E+V + P+
Sbjct: 177 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVDLVIEKEEVKIQPEA 236
Query: 61 KKAIIDLSDGDMRKVLNILQSA---------------------------------ATAHA 87
+++ LS GDMR+ LN+LQ+ A H
Sbjct: 237 VDSLVKLSKGDMRRALNVLQACHASSIPLPVKNAPKDQPRPEPELITNGTIYDCIAAPHP 296
Query: 88 DEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ------------DIISTIEIPESMLVDLV 135
++ E + TLL + ST++ L S++ + + +E+P + +
Sbjct: 297 ADIQE-IMTTLLATSDVTSCLSTVNTLKSNKGLALADILAALGEQLQQLEVPAQTRITWL 355
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIV 185
+++IE+RLA G SE IQ L+ R+ E++ D+G+ +
Sbjct: 356 EGLAEIEFRLAGGGSEAIQTGGLVGVV---RNGCELM-----GDKGVSMA 397
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 119/273 (43%), Gaps = 93/273 (34%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP+TLD++ HQDI++TI + VD + + + L G + S ++A
Sbjct: 46 VEKYRPNTLDDVSGHQDILATI----NRFVD----ANRLPHLLLYGPPGTGKTSTILALA 97
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK------------SSYKLI 206
+ S + VLELNASDDRGI +VR+QI FASTK + +SYKLI
Sbjct: 98 RRIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPQPTSGGSSLASYKLI 157
Query: 207 ILDEADAMTNDAQNALRR------------------------------------------ 224
ILDEADAMT AQ ALRR
Sbjct: 158 ILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDI 217
Query: 225 -----------KLPVTPDGKKAIIDLSDGDMRKVLNILQSA---------ATAHADE--- 261
++ + P+ +++ LS GDMR+ LN+LQ+ A D+
Sbjct: 218 RSLVDLVIEKEEVKIQPEAVDSLVKLSKGDMRRALNVLQACHASSIPLPVKNAPKDQPRP 277
Query: 262 ----VNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ T+Y+ + P +I I+ LL S
Sbjct: 278 EPELITNGTIYDCIAAPHPADIQEIMTTLLATS 310
>gi|116205575|ref|XP_001228598.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88176799|gb|EAQ84267.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 389
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 96/149 (64%), Positives = 110/149 (73%), Gaps = 10/149 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 62 DILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGSENMRQMVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTK---TMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+VR+QI FASTK TM S+ +KLIILDEADAMTN AQ ALRRI+EK+T N
Sbjct: 122 DVVREQIKTFASTKQIFTMGASASRTGIAGFKLIILDEADAMTNTAQMALRRIMEKYTAN 181
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 182 TRFCIIANYSHKLSPALLSRCTRFRFSPL 210
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 48/217 (22%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VIE+E V + P+
Sbjct: 175 MEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRVLVDKVIEEETVKIIPEA 234
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIFTLLVSRV 103
+A++ LS GDMR+ LN+LQ+ + + + TI+ + +
Sbjct: 235 TEALVRLSKGDMRRALNVLQACHASSTPLQPRDAPKIPEKDIVRETITTQTIYNCVAAPP 294
Query: 104 EKYRPSTLDELVSHQDIIST----------------------------IEIPESMLVDLV 135
L L+S D+ S +E+ +++ +
Sbjct: 295 PDAIKKILGTLLSTSDVTSCLSTINTLKVAQGLALADIITALSDELTKLEVKPQVMITWL 354
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVL 172
K++++E+R+++G++E IQ SA++ A R+ +E++
Sbjct: 355 EKLAEVEHRVSSGSNEAIQTSAVVGAI---RNGVELM 388
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 81/136 (59%), Gaps = 22/136 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
VEKYRP +L ++ HQDI++TI + VD + + + L G + S ++A
Sbjct: 46 VEKYRPVSLADVSGHQDILATI----NKFVD----SNRLPHLLLYGPPGTGKTSTILALA 97
Query: 161 --AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK---TMHKSS-------YKLIIL 208
+ S + VLELNASDDRGI +VR+QI FASTK TM S+ +KLIIL
Sbjct: 98 RRIYGSENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTMGASASRTGIAGFKLIIL 157
Query: 209 DEADAMTNDAQNALRR 224
DEADAMTN AQ ALRR
Sbjct: 158 DEADAMTNTAQMALRR 173
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 47/67 (70%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K+ +GLAL DI+T +S + +LE+ +++ + K++++E+R+++G++E IQ SA+
Sbjct: 318 INTLKVAQGLALADIITALSDELTKLEVKPQVMITWLEKLAEVEHRVSSGSNEAIQTSAV 377
Query: 516 IAAFNSA 522
+ A +
Sbjct: 378 VGAIRNG 384
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 17/80 (21%)
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTVYNS 270
+ P+ +A++ LS GDMR+ LN+LQ+ + + + T+YN
Sbjct: 230 IIPEATEALVRLSKGDMRRALNVLQACHASSTPLQPRDAPKIPEKDIVRETITTQTIYNC 289
Query: 271 VGYPTKTEITNILRWLLNES 290
V P I IL LL+ S
Sbjct: 290 VAAPPPDAIKKILGTLLSTS 309
>gi|156841917|ref|XP_001644329.1| hypothetical protein Kpol_1066p38 [Vanderwaltozyma polyspora DSM
70294]
gi|156114969|gb|EDO16471.1| hypothetical protein Kpol_1066p38 [Vanderwaltozyma polyspora DSM
70294]
Length = 336
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/144 (61%), Positives = 115/144 (79%), Gaps = 1/144 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +F++E +LPHLLFYGPPGTGKT+TI+A A+++Y K ++ MVLELNASDDRGI +VR+
Sbjct: 36 VRKFVEEGKLPHLLFYGPPGTGKTSTIIALAKEIYGK-NYHNMVLELNASDDRGIDVVRN 94
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
Q+ FAST+ + +KLIILDEADAMTN AQN+LRRIIEK+T N RFCI+ NY K+ P
Sbjct: 95 QVKDFASTRQIFSKGFKLIILDEADAMTNAAQNSLRRIIEKYTKNTRFCILANYAYKLTP 154
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLD 440
A+ SRCTRFRF P+ + I R++
Sbjct: 155 ALLSRCTRFRFQPIGPAAIEQRMN 178
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 118/250 (47%), Gaps = 64/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP++LDE+ +I++T+ + E L L+ + GT + + AL
Sbjct: 15 VEKYRPTSLDEVYGQNEIVNTVRKFVEEGKLPHLL-------FYGPPGTGKTSTIIALAK 67
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
VLELNASDDRGI +VR+Q+ FAST+ + +KLIILDEADAMTN AQN
Sbjct: 68 EIYGKNYHNMVLELNASDDRGIDVVRNQVKDFASTRQIFSKGFKLIILDEADAMTNAAQN 127
Query: 221 ALRRKL---------------------------------PVTP----------------- 230
+LRR + P+ P
Sbjct: 128 SLRRIIEKYTKNTRFCILANYAYKLTPALLSRCTRFRFQPIGPAAIEQRMNNVIIKENIK 187
Query: 231 ---DGKKAIIDLSDGDMRKVLNILQS--AATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
KKA++ +S GDMR+VLN+LQ+ AA +E+ E+ +Y+ G ++ IL+
Sbjct: 188 IDDAAKKALLKVSKGDMRRVLNVLQASKAAVEENEEITEELIYDCCGMCRPGDVKKILKS 247
Query: 286 LLNESMDLCY 295
+L E Y
Sbjct: 248 ILEEDFTSAY 257
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 106/195 (54%), Gaps = 30/195 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY K+TPA+ SRCTRFRF P+ + I R++ VI +E + +
Sbjct: 133 IEKYTKNTRFCILANYAYKLTPALLSRCTRFRFQPIGPAAIEQRMNNVIIKENIKIDDAA 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNE------DTIFTLLVSRVEKYRPSTLDE- 113
KKA++ +S GDMR+VLN+LQ++ A + D V+K S L+E
Sbjct: 193 KKALLKVSKGDMRRVLNVLQASKAAVEENEEITEELIYDCCGMCRPGDVKKILKSILEED 252
Query: 114 ---------LVSHQDIISTIEIPESML--------------VDLVLKMSDIEYRLAAGTS 150
+ + +++++I E ++ ++++ K+SDIEY ++ G +
Sbjct: 253 FTSAYYTMNKICQEKGVASVDIIEEIVLLLEEYELQNEETRIEMLTKLSDIEYAISKGGN 312
Query: 151 EKIQLSALIAAFNSA 165
K+ SA+I+A ++
Sbjct: 313 TKVVHSAIISAIKTS 327
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIP-ESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
Y + +I EKG+A DI+ EI LL+ E+ E ++++ K+SDIEY ++ G + K+
Sbjct: 257 YYTMNKICQEKGVASVDIIEEIVLLLEEYELQNEETRIEMLTKLSDIEYAISKGGNTKVV 316
Query: 512 LSALIAAFNSA 522
SA+I+A ++
Sbjct: 317 HSAIISAIKTS 327
>gi|320594193|gb|EFX06596.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 386
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/148 (62%), Positives = 109/148 (73%), Gaps = 9/148 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 62 DILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGAENTRQMVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTKTMHKSS---------YKLIILDEADAMTNDAQNALRRIIEKFTTNV 402
+VR+QI FAST+ + +S YKLI+LDEADAMTN AQ ALRRI+EK+T N
Sbjct: 122 DVVREQIKTFASTRQIFAASSGPAPSLARYKLIVLDEADAMTNTAQMALRRIMEKYTANT 181
Query: 403 RFCIICNYLSKIPPAIQSRCTRFRFGPL 430
RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 182 RFCIIANYAHKLSPALLSRCTRFRFSPL 209
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 95/207 (45%), Gaps = 42/207 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL + I ++ VI E V + +
Sbjct: 174 MEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLKEADIRVLVNKVIADEDVKIMSEA 233
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA----------HADEVNE----DTIFTLLVSRVEKY 106
A++ LS GDMR+ LN+LQ+ + D V E +TI+ + +
Sbjct: 234 ADALVTLSRGDMRRALNVLQACHASSTPLLPKDAPKTDIVRELITTETIYNCIAAPPPDA 293
Query: 107 RPSTLDELVSHQDI----------------------------ISTIEIPESMLVDLVLKM 138
L L+ D+ I+ +E ++V + +
Sbjct: 294 IREILHTLLETSDVTSCLDTVNALKVARGLALADIITALAEEITKVEASPKVMVTWLSGL 353
Query: 139 SDIEYRLAAGTSEKIQLSALIAAFNSA 165
++IE+R+A G E +Q AL+ S
Sbjct: 354 AEIEHRVAGGAGETVQTGALVGVIRSG 380
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 80/134 (59%), Gaps = 19/134 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +LD++ HQDI++TI + + L L+L GT + + AL
Sbjct: 46 VEKYRPVSLDDVSGHQDILATINKFVDSNRLPHLLLYGP-------PGTGKTSTILALAR 98
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------YKLIILDE 210
A + + VLELNASDDRGI +VR+QI FAST+ + +S YKLI+LDE
Sbjct: 99 RIYGAENTRQMVLELNASDDRGIDVVREQIKTFASTRQIFAASSGPAPSLARYKLIVLDE 158
Query: 211 ADAMTNDAQNALRR 224
ADAMTN AQ ALRR
Sbjct: 159 ADAMTNTAQMALRR 172
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 40/67 (59%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+ +K+ +GLAL DI+T ++ + ++E ++V + +++IE+R+A G E +Q AL
Sbjct: 314 VNALKVARGLALADIITALAEEITKVEASPKVMVTWLSGLAEIEHRVAGGAGETVQTGAL 373
Query: 516 IAAFNSA 522
+ S
Sbjct: 374 VGVIRSG 380
>gi|71413122|ref|XP_808715.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
Brener]
gi|70872975|gb|EAN86864.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/192 (51%), Positives = 130/192 (67%), Gaps = 22/192 (11%)
Query: 269 NSVGYPTKTEITNILRWL-------LNESM---DLCYKINRFIDENELPHLLFYGPPGTG 318
NS G+ K+ + L W+ L+E + D+ R +D LPHLLFYGPPGTG
Sbjct: 7 NSTGHAAKS---STLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTG 63
Query: 319 KTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------- 371
KTTTI ACA L+ K + A VLE+NASDDRGI +VR Q+ +F+ST + + +S
Sbjct: 64 KTTTIKACAYYLFGKDRIRANVLEMNASDDRGIDVVRQQVREFSSTSSFYFASAPAAPTI 123
Query: 372 --YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGP 429
+KL+ILDEAD M+ DAQ ALRRIIEK+T NVRFCI+CN+++KI PA+QSRCTRFRF P
Sbjct: 124 AAFKLVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAP 183
Query: 430 LDSSLIMSRLDY 441
+ S ++ RL +
Sbjct: 184 VKKSAMLPRLKF 195
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 112/196 (57%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCI+CN+++KI PA+QSRCTRFRF P+ S ++ RL +V ++E V T +G
Sbjct: 149 IEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMLPRLKFVAQEEGVRFTDEG 208
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------------------LV 100
A LS+GD+R+ LN +Q++A + A E+ E++++ +
Sbjct: 209 LVAAFRLSNGDLRRCLNTMQASAMS-AGEITEESVYRVTGNPTPADVRGIVEDMIAHDFA 267
Query: 101 SRVEKYRPSTLDELVSHQD-------IISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ EK + + ++ VS D I+ +++P+ L++K++D+EY A G E
Sbjct: 268 ASWEKVQQTVSEKGVSSTDLVREVHHIVMAMDLPQESKCFLLMKLADVEYYAAGGAKETT 327
Query: 154 QLSALIAAFNSARDKL 169
+S ++ AF ++ L
Sbjct: 328 CISGILGAFQLVKEAL 343
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 117/244 (47%), Gaps = 69/244 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TLDE+V+H+DI+ST L+D + + + GT + + A
Sbjct: 21 VEKYRPVTLDEVVAHEDILSTTR----RLMD-SGNLPHLLFYGPPGTGKTTTIKACAYYL 75
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------YKLIILDEAD 212
F R + VLE+NASDDRGI +VR Q+ +F+ST + + +S +KL+ILDEAD
Sbjct: 76 FGKDRIRANVLEMNASDDRGIDVVRQQVREFSSTSSFYFASAPAAPTIAAFKLVILDEAD 135
Query: 213 AMTNDAQNALRRKL---------------------------------PV----------- 228
M+ DAQ ALRR + PV
Sbjct: 136 QMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMLPRLKF 195
Query: 229 ---------TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEI 279
T +G A LS+GD+R+ LN +Q++A + A E+ E++VY G PT ++
Sbjct: 196 VAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTMQASAMS-AGEITEESVYRVTGNPTPADV 254
Query: 280 TNIL 283
I+
Sbjct: 255 RGIV 258
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 45/74 (60%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
+ K+Q+ EKG++ TD++ E+ +V +++P+ L++K++D+EY A G E +
Sbjct: 270 WEKVQQTVSEKGVSSTDLVREVHHIVMAMDLPQESKCFLLMKLADVEYYAAGGAKETTCI 329
Query: 513 SALIAAFNSARDKL 526
S ++ AF ++ L
Sbjct: 330 SGILGAFQLVKEAL 343
>gi|219117762|ref|XP_002179670.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408723|gb|EEC48656.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 338
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/149 (61%), Positives = 113/149 (75%), Gaps = 1/149 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLY-TKAQFNAMVLELNASDDRG 350
D+ I ID LPHLL YGPPGTGKT+TI+A A+++Y + + +++M LELNASD RG
Sbjct: 36 DIVSSITNLIDSENLPHLLLYGPPGTGKTSTIVAAAKRMYGSSSAYSSMTLELNASDARG 95
Query: 351 IGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
I +VR++I +FA TK + KLIILDEADAMT+DAQ ALRRIIEK+T N RFC++CNY
Sbjct: 96 IDVVRNEIKEFAGTKQLFNKGIKLIILDEADAMTSDAQFALRRIIEKYTKNARFCLVCNY 155
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+SKI PA+QSRCTRFRF PL I RL
Sbjct: 156 VSKIIPALQSRCTRFRFAPLSRDQIEGRL 184
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 112/202 (55%), Gaps = 35/202 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFC++CNY+SKI PA+QSRCTRFRF PL I RL V E EK T DG
Sbjct: 140 IEKYTKNARFCLVCNYVSKIIPALQSRCTRFRFAPLSRDQIEGRLTEVAEAEKCKTTQDG 199
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ-- 118
AI+ LS GDMR+VLN+LQS A + A+ V+E +++ + + LD L++H
Sbjct: 200 IDAILRLSGGDMRRVLNLLQSTAMS-AEVVDETSVYLTSGAPLPADMDQILDWLMNHNFQ 258
Query: 119 ------------------DIISTI-----------EIPESMLVDLVLKMSDIEYRLAAGT 149
D+++ + +P ML+D MS++E+RLA G
Sbjct: 259 TACEQITAMCTMKGYALADVLAELTSKIMCLENLDSVPLGMLLD---GMSNVEHRLAFGP 315
Query: 150 SEKIQLSALIAAFNSARDKLEV 171
EKIQ+++L+ F R+ + V
Sbjct: 316 DEKIQIASLVGVFVRTREAISV 337
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 122/247 (49%), Gaps = 69/247 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP L++LVS DI+S+I + L+D ++ + L G + S ++AA
Sbjct: 20 VEKYRPQRLEDLVSQDDIVSSI----TNLID----SENLPHLLLYGPPGTGKTSTIVAAA 71
Query: 163 ------NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
+SA + LELNASD RGI +VR++I +FA TK + KLIILDEADAMT+
Sbjct: 72 KRMYGSSSAYSSM-TLELNASDARGIDVVRNEIKEFAGTKQLFNKGIKLIILDEADAMTS 130
Query: 217 DAQNALRR---------------------------------------------------- 224
DAQ ALRR
Sbjct: 131 DAQFALRRIIEKYTKNARFCLVCNYVSKIIPALQSRCTRFRFAPLSRDQIEGRLTEVAEA 190
Query: 225 -KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
K T DG AI+ LS GDMR+VLN+LQS A + A+ V+E +VY + G P ++ IL
Sbjct: 191 EKCKTTQDGIDAILRLSGGDMRRVLNLLQSTAMS-AEVVDETSVYLTSGAPLPADMDQIL 249
Query: 284 RWLLNES 290
WL+N +
Sbjct: 250 DWLMNHN 256
>gi|254567680|ref|XP_002490950.1| Subunit of heteropentameric Replication factor C (RF-C), which is a
DNA binding protein and ATPase t [Komagataella pastoris
GS115]
gi|238030747|emb|CAY68670.1| Subunit of heteropentameric Replication factor C (RF-C), which is a
DNA binding protein and ATPase t [Komagataella pastoris
GS115]
gi|328352517|emb|CCA38916.1| replication factor C subunit 3/5 [Komagataella pastoris CBS 7435]
Length = 332
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/144 (61%), Positives = 112/144 (77%), Gaps = 1/144 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +F+ + LPHLLFYGPPGTGKT+TI+A A+++Y K + MVLELNASDDRGI +VRD
Sbjct: 36 VRKFVQDGRLPHLLFYGPPGTGKTSTIMALAKEIYGK-NYRNMVLELNASDDRGISVVRD 94
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+ + + +KLIILDEADAMTN AQNALRR+IEKFT N RFC++ NY K+ P
Sbjct: 95 QIVNFASTRQIFSNGFKLIILDEADAMTNVAQNALRRVIEKFTKNTRFCVLANYAHKLNP 154
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLD 440
A+ SRCTRFRF P+ I R++
Sbjct: 155 ALLSRCTRFRFQPISQEAIQLRIN 178
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 116/257 (45%), Gaps = 66/257 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS+LD + D + T+ + + L L+ + GT + + AL
Sbjct: 15 VEKYRPSSLDYVYGQHDTVDTVRKFVQDGRLPHLL-------FYGPPGTGKTSTIMALAK 67
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ VLELNASDDRGI +VRDQI FAST+ + + +KLIILDEADAMTN AQN
Sbjct: 68 EIYGKNYRNMVLELNASDDRGISVVRDQIVNFASTRQIFSNGFKLIILDEADAMTNVAQN 127
Query: 221 ALRR------------------------------KLPVTPDGKKAI-------------- 236
ALRR + P ++AI
Sbjct: 128 ALRRVIEKFTKNTRFCVLANYAHKLNPALLSRCTRFRFQPISQEAIQLRINDVIKQEGIN 187
Query: 237 ---------IDLSDGDMRKVLNILQSAATA---HADEVNEDTVYNSVGYPTKTEITNILR 284
+ LS GDMRK LN+LQ+ T + + +Y VG P +I ++L
Sbjct: 188 IDDDALQSLLKLSKGDMRKALNVLQACFTGLDSPSQAITSPMIYECVGAPDPQDIEHVLD 247
Query: 285 WLLNESMDLCYKI-NRF 300
++ E+ + + I NR
Sbjct: 248 TIIQENWEAAFTIMNRL 264
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 102/191 (53%), Gaps = 32/191 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC++ NY K+ PA+ SRCTRFRF P+ I R++ VI+QE +N+ D
Sbjct: 133 IEKFTKNTRFCVLANYAHKLNPALLSRCTRFRFQPISQEAIQLRINDVIKQEGINIDDDA 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA--------------------------HADEV---- 90
++++ LS GDMRK LN+LQ+ T H +
Sbjct: 193 LQSLLKLSKGDMRKALNVLQACFTGLDSPSQAITSPMIYECVGAPDPQDIEHVLDTIIQE 252
Query: 91 NEDTIFTLLVSRVEKYRPSTLDELV-SHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGT 149
N + FT++ +R++ + L +LV DI+ ++ + + ++ ++DIEY ++ G
Sbjct: 253 NWEAAFTIM-NRLKLEKGYALIDLVNGFVDILGGYQLEKMCRLTILKGLADIEYAISRGG 311
Query: 150 SEKIQLSALIA 160
++ IQ +A+I
Sbjct: 312 NDAIQNTAVIG 322
>gi|85110311|ref|XP_963397.1| activator 1 subunit 3 [Neurospora crassa OR74A]
gi|28881264|emb|CAD70523.1| related to replication factor C chain Rfc3 [Neurospora crassa]
gi|28925076|gb|EAA34161.1| activator 1 subunit 3 [Neurospora crassa OR74A]
Length = 389
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 110/149 (73%), Gaps = 10/149 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLLFYGPPGTGKT+T+LA AR++Y A MVLELNASDDRGI
Sbjct: 62 DILATINKFVDTNRLPHLLFYGPPGTGKTSTVLALARQIYGAANMRQMVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTKTMH----------KSSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+VR+QI FASTK + + +KLIILDEADAMT+ AQ ALRRI+EK+T N
Sbjct: 122 DVVREQIKTFASTKQIFSLGSSSSRSGLAGFKLIILDEADAMTSTAQMALRRIMEKYTAN 181
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 182 TRFCIIANYSHKLSPALLSRCTRFRFSPL 210
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 108/217 (49%), Gaps = 48/217 (22%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VI++E V + PD
Sbjct: 175 MEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEKDIRVLVDKVIDEENVKILPDA 234
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-------------AHADEVNED----TIFTLLVSRV 103
A++ LS GDMR+ LN+LQ+ A D V E TI+ + +
Sbjct: 235 TDALVRLSKGDMRRALNVLQACHASSTPLQPKNAPKIAEKDIVRETITIRTIYDCVAAPP 294
Query: 104 EKYRPSTLDELVSHQDI------ISTIEIPESM-LVDLVLKMSD---------------- 140
L L+S D+ I+T+++ + + L D++ +S+
Sbjct: 295 PDAIKKILSTLLSTSDVTTCLSTINTLKVAQGLALADIITALSEEIVKLEVKPQVMITWL 354
Query: 141 -----IEYRLAAGTSEKIQLSALIAAFNSARDKLEVL 172
IE+R+A+G E IQ A++ A R+ +E++
Sbjct: 355 DELAKIEHRVASGAGEVIQTGAVVGAI---RNGVELM 388
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 79/133 (59%), Gaps = 16/133 (12%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +L ++ QDI++TI + VD ++ + + GT + + AL
Sbjct: 46 VEKYRPVSLSDVSGQQDILATI----NKFVD-TNRLPHLLFYGPPGTGKTSTVLALARQI 100
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH----------KSSYKLIILDEA 211
+ +A + VLELNASDDRGI +VR+QI FASTK + + +KLIILDEA
Sbjct: 101 YGAANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGSSSSRSGLAGFKLIILDEA 160
Query: 212 DAMTNDAQNALRR 224
DAMT+ AQ ALRR
Sbjct: 161 DAMTSTAQMALRR 173
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 43/67 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K+ +GLAL DI+T +S + +LE+ +++ + +++ IE+R+A+G E IQ A+
Sbjct: 318 INTLKVAQGLALADIITALSEEIVKLEVKPQVMITWLDELAKIEHRVASGAGEVIQTGAV 377
Query: 516 IAAFNSA 522
+ A +
Sbjct: 378 VGAIRNG 384
>gi|401839265|gb|EJT42559.1| RFC3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 340
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/158 (58%), Positives = 118/158 (74%), Gaps = 8/158 (5%)
Query: 289 ESMDLCYKIN-------RFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVL 341
E++D Y N +F+D+ +LPHLLFYGPPGTGKT+TI+A AR++Y + ++ MVL
Sbjct: 22 ETLDEVYGQNEVISTVRKFVDQGKLPHLLFYGPPGTGKTSTIVALAREIYGR-NYSNMVL 80
Query: 342 ELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
ELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNALRR+IE++T N
Sbjct: 81 ELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKN 140
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RFC++ NY K+ PA+ SRCTRFRF PL I R+
Sbjct: 141 TRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRI 178
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 133/274 (48%), Gaps = 68/274 (24%)
Query: 84 TAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEY 143
+A AD+ N++ + VEKYRP TLDE+ ++IST+ VD K+ + +
Sbjct: 2 SAGADKKNKENL-----PWVEKYRPETLDEVYGQNEVISTVR----KFVDQG-KLPHLLF 51
Query: 144 RLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSY 203
GT + + AL VLELNASDDRGI +VR+QI FAST+ + +
Sbjct: 52 YGPPGTGKTSTIVALAREIYGRNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGF 111
Query: 204 KLIILDEADAMTNDAQNALRR--------------------------------------- 224
KLIILDEADAMTN AQNALRR
Sbjct: 112 KLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQ 171
Query: 225 --------------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDT 266
KL ++P+ +KA+I+LS+GDMR+VLN+LQS DE+++D
Sbjct: 172 EAIERRIANVLVREKLKLSPEAEKALIELSNGDMRRVLNVLQSCKATLDNPGEDEISDDV 231
Query: 267 VYNSVGYPTKTEITNILRWLLNESMDLC-YKINR 299
+Y G P +++ +L+ +L + Y +N+
Sbjct: 232 IYECCGAPRPSDLKTVLKSMLEDDWGTAHYTLNK 265
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 115/197 (58%), Gaps = 32/197 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T N RFC++ NY K+TPA+ SRCTRFRF PL I R+ V+ +EK+ ++P+
Sbjct: 134 IERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVREKLKLSPEA 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTIF------------TLLVSRVE 104
+KA+I+LS+GDMR+VLN+LQS DE+++D I+ T+L S +E
Sbjct: 194 EKALIELSNGDMRRVLNVLQSCKATLDNPGEDEISDDVIYECCGAPRPSDLKTVLKSMLE 253
Query: 105 KYRPS---TLDELVSH---------QDIISTIE----IPESMLVDLVLKMSDIEYRLAAG 148
+ TL+++ S + I+ +E E V L+ +++DIEY ++ G
Sbjct: 254 DDWGTAHYTLNKIRSAKGLALIDLIEGIVKILEEYDLQNEETRVQLLTRLADIEYSISKG 313
Query: 149 TSEKIQLSALIAAFNSA 165
+++IQ SA+I A ++
Sbjct: 314 GNDQIQGSAVIGAIKTS 330
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIP-ESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
+ + +I+ KGLAL D++ I ++ ++ E V L+ +++DIEY ++ G +++IQ
Sbjct: 260 HYTLNKIRSAKGLALIDLIEGIVKILEEYDLQNEETRVQLLTRLADIEYSISKGGNDQIQ 319
Query: 512 LSALIAAFNSA 522
SA+I A ++
Sbjct: 320 GSAVIGAIKTS 330
>gi|365758856|gb|EHN00681.1| Rfc3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 340
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/158 (58%), Positives = 118/158 (74%), Gaps = 8/158 (5%)
Query: 289 ESMDLCYKIN-------RFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVL 341
E++D Y N +F+D+ +LPHLLFYGPPGTGKT+TI+A AR++Y + ++ MVL
Sbjct: 22 ETLDEVYGQNEVISTVRKFVDQGKLPHLLFYGPPGTGKTSTIVALAREIYGR-NYSNMVL 80
Query: 342 ELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
ELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNALRR+IE++T N
Sbjct: 81 ELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKN 140
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RFC++ NY K+ PA+ SRCTRFRF PL I R+
Sbjct: 141 TRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRI 178
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 133/274 (48%), Gaps = 68/274 (24%)
Query: 84 TAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEY 143
+A AD+ N++ + VEKYRP TLDE+ ++IST+ VD K+ + +
Sbjct: 2 SAGADKKNKENL-----PWVEKYRPETLDEVYGQNEVISTVR----KFVDQG-KLPHLLF 51
Query: 144 RLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSY 203
GT + + AL VLELNASDDRGI +VR+QI FAST+ + +
Sbjct: 52 YGPPGTGKTSTIVALAREIYGRNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGF 111
Query: 204 KLIILDEADAMTNDAQNALRR--------------------------------------- 224
KLIILDEADAMTN AQNALRR
Sbjct: 112 KLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQ 171
Query: 225 --------------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDT 266
KL ++P+ +KA+I+LS+GDMR+VLN+LQS DE+++D
Sbjct: 172 EAIERRIANVLVREKLKLSPEAEKALIELSNGDMRRVLNVLQSCKATLDNPGEDEISDDV 231
Query: 267 VYNSVGYPTKTEITNILRWLLNESMDLC-YKINR 299
+Y G P +++ +L+ +L + Y +N+
Sbjct: 232 IYECCGAPRPSDLKTVLKSMLEDDWGTAHYTLNK 265
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 115/197 (58%), Gaps = 32/197 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T N RFC++ NY K+TPA+ SRCTRFRF PL I R+ V+ +EK+ ++P+
Sbjct: 134 IERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVREKLKLSPEA 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTIF------------TLLVSRVE 104
+KA+I+LS+GDMR+VLN+LQS DE+++D I+ T+L S +E
Sbjct: 194 EKALIELSNGDMRRVLNVLQSCKATLDNPGEDEISDDVIYECCGAPRPSDLKTVLKSMLE 253
Query: 105 KYRPS---TLDELVSH---------QDIISTIEI----PESMLVDLVLKMSDIEYRLAAG 148
+ TL+++ S + I+ +E E V L+ +++DIEY ++ G
Sbjct: 254 DDWGTAHYTLNKIRSAKGLALIDLIEGIVKILEKYDLQNEETRVQLLTRLADIEYSISKG 313
Query: 149 TSEKIQLSALIAAFNSA 165
+++IQ SA+I A ++
Sbjct: 314 GNDQIQGSAVIGAIKTS 330
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIP-ESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
+ + +I+ KGLAL D++ I ++ + ++ E V L+ +++DIEY ++ G +++IQ
Sbjct: 260 HYTLNKIRSAKGLALIDLIEGIVKILEKYDLQNEETRVQLLTRLADIEYSISKGGNDQIQ 319
Query: 512 LSALIAAFNSA 522
SA+I A ++
Sbjct: 320 GSAVIGAIKTS 330
>gi|336467972|gb|EGO56135.1| hypothetical protein NEUTE1DRAFT_130196 [Neurospora tetrasperma
FGSC 2508]
gi|350289788|gb|EGZ71013.1| P-loop containing nucleoside triphosphate hydrolase protein
[Neurospora tetrasperma FGSC 2509]
Length = 389
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 110/149 (73%), Gaps = 10/149 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLLFYGPPGTGKT+T+LA AR++Y A MVLELNASDDRGI
Sbjct: 62 DILATINKFVDTNRLPHLLFYGPPGTGKTSTVLALARQIYGTANMRQMVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTKTMH----------KSSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+VR+QI FASTK + + +KLIILDEADAMT+ AQ ALRRI+EK+T N
Sbjct: 122 DVVREQIKTFASTKQIFSLGSSSSRSGLAGFKLIILDEADAMTSTAQMALRRIMEKYTAN 181
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 182 TRFCIIANYSHKLSPALLSRCTRFRFSPL 210
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 108/217 (49%), Gaps = 48/217 (22%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VI++E V + PD
Sbjct: 175 MEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEKDIRVLVDKVIDEENVKILPDA 234
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-------------AHADEVNED----TIFTLLVSRV 103
A++ LS GDMR+ LN+LQ+ A D V E TI+ + +
Sbjct: 235 TDALVRLSKGDMRRALNVLQACHASSTPLQPKNAPKIAEKDIVRETITIRTIYDCVAAPP 294
Query: 104 EKYRPSTLDELVSHQDI------ISTIEIPESM-LVDLVLKMSD---------------- 140
L L+S D+ I+T+++ + + L D++ +S+
Sbjct: 295 PDAIKKILSTLLSTSDVTTCLSTINTLKVAQGLALADIITALSEEIIKLEVKPQVMITWL 354
Query: 141 -----IEYRLAAGTSEKIQLSALIAAFNSARDKLEVL 172
IE+R+A+G E IQ A++ A R+ +E++
Sbjct: 355 DELAKIEHRVASGAGEVIQTGAVVGAI---RNGVELM 388
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 79/133 (59%), Gaps = 16/133 (12%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +L ++ QDI++TI + VD ++ + + GT + + AL
Sbjct: 46 VEKYRPVSLSDVSGQQDILATI----NKFVD-TNRLPHLLFYGPPGTGKTSTVLALARQI 100
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH----------KSSYKLIILDEA 211
+ +A + VLELNASDDRGI +VR+QI FASTK + + +KLIILDEA
Sbjct: 101 YGTANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGSSSSRSGLAGFKLIILDEA 160
Query: 212 DAMTNDAQNALRR 224
DAMT+ AQ ALRR
Sbjct: 161 DAMTSTAQMALRR 173
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 43/67 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K+ +GLAL DI+T +S + +LE+ +++ + +++ IE+R+A+G E IQ A+
Sbjct: 318 INTLKVAQGLALADIITALSEEIIKLEVKPQVMITWLDELAKIEHRVASGAGEVIQTGAV 377
Query: 516 IAAFNSA 522
+ A +
Sbjct: 378 VGAIRNG 384
>gi|365982341|ref|XP_003668004.1| hypothetical protein NDAI_0A06060 [Naumovozyma dairenensis CBS 421]
gi|343766770|emb|CCD22761.1| hypothetical protein NDAI_0A06060 [Naumovozyma dairenensis CBS 421]
Length = 338
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/158 (60%), Positives = 118/158 (74%), Gaps = 8/158 (5%)
Query: 289 ESMDLCYK-------INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVL 341
ES+D Y + +F++E +LPHLLFYGPPGTGKT+TI+A AR+++ K ++ MVL
Sbjct: 23 ESLDDVYGQTEVVTTVRKFLEEGKLPHLLFYGPPGTGKTSTIVALAREIFGK-NYSNMVL 81
Query: 342 ELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
ELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNALRRIIEK+T N
Sbjct: 82 ELNASDDRGIEVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRIIEKYTKN 141
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RFCI+ NY K+ PA+ SRCTRFRF PL I R+
Sbjct: 142 TRFCILANYSHKLTPALLSRCTRFRFQPLPRDAIEKRI 179
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 115/252 (45%), Gaps = 66/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +LD++ ++++T+ + E L L+ + GT + + AL
Sbjct: 17 VEKYRPESLDDVYGQTEVVTTVRKFLEEGKLPHLL-------FYGPPGTGKTSTIVALAR 69
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
VLELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQN
Sbjct: 70 EIFGKNYSNMVLELNASDDRGIEVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQN 129
Query: 221 ALRR-----------------------------------KLP------------------ 227
ALRR LP
Sbjct: 130 ALRRIIEKYTKNTRFCILANYSHKLTPALLSRCTRFRFQPLPRDAIEKRISNVLIHENIK 189
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNE----DTVYNSVGYPTKTEITNIL 283
++ D K A+I LS GDMR+VLN+LQ++ D NE D +Y G P ++ IL
Sbjct: 190 ISDDAKDALITLSQGDMRRVLNVLQASKATLDDPANEEIHADVIYECCGAPRPADLKTIL 249
Query: 284 RWLLNESMDLCY 295
+ +L + Y
Sbjct: 250 KSILEDDWSSAY 261
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 109/198 (55%), Gaps = 34/198 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY K+TPA+ SRCTRFRF PL I R+ V+ E + ++ D
Sbjct: 135 IEKYTKNTRFCILANYSHKLTPALLSRCTRFRFQPLPRDAIEKRISNVLIHENIKISDDA 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNE----DTIF------------TLLVSRVE 104
K A+I LS GDMR+VLN+LQ++ D NE D I+ T+L S +E
Sbjct: 195 KDALITLSQGDMRRVLNVLQASKATLDDPANEEIHADVIYECCGAPRPADLKTILKSILE 254
Query: 105 KYRPS---TLDELVSHQDIISTIEIPESML--------------VDLVLKMSDIEYRLAA 147
S TL +L S + ++ I++ E ++ + L+ K+ DIEY ++
Sbjct: 255 DDWSSAYYTLTKLRSTKG-LALIDLIEGIIKLLEDYELKNELTRISLLSKLGDIEYSISK 313
Query: 148 GTSEKIQLSALIAAFNSA 165
G ++KIQ SA+I A ++
Sbjct: 314 GGNDKIQSSAVIGAIKTS 331
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488
P D I+ + DD S Y + +++ KGLAL D++ I L+ E+ +
Sbjct: 242 PADLKTILKSILEDDWSSA-----YYTLTKLRSTKGLALIDLIEGIIKLLEDYELKNELT 296
Query: 489 -VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
+ L+ K+ DIEY ++ G ++KIQ SA+I A ++
Sbjct: 297 RISLLSKLGDIEYSISKGGNDKIQSSAVIGAIKTS 331
>gi|367055770|ref|XP_003658263.1| hypothetical protein THITE_2124823 [Thielavia terrestris NRRL 8126]
gi|347005529|gb|AEO71927.1| hypothetical protein THITE_2124823 [Thielavia terrestris NRRL 8126]
Length = 389
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 108/149 (72%), Gaps = 10/149 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLLFYGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 62 DILATINKFVDSNRLPHLLFYGPPGTGKTSTILALARRIYGHQNMRQMVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTKTMHK----------SSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+VR+ I FASTK + + +KLIILDEADAMTN AQ ALRRI+EK+T N
Sbjct: 122 EVVREHIKTFASTKQIFTAGSSASRAGIAGFKLIILDEADAMTNTAQMALRRIMEKYTAN 181
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 182 TRFCIIANYAHKLSPALLSRCTRFRFSPL 210
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 106/217 (48%), Gaps = 48/217 (22%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VIE+E V + PD
Sbjct: 175 MEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLHEQDIRVLVDKVIEEEGVKIMPDA 234
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIFTLLVSRV 103
+++ LS GDMR+ LN+LQ+ + + + +TI+ + +
Sbjct: 235 VDSLVRLSKGDMRRALNVLQACHASSTPLQPRDGPKIPEQDIVRETITTETIYNCVAAPP 294
Query: 104 EKYRPSTLDELVSHQDIIST----------------------------IEIPESMLVDLV 135
L L+S D+ S +E+ +++ +
Sbjct: 295 PDAIKKILSTLLSTSDVTSCLSTINTLKAAQGLALADIITALSEELVKLEVKPQVMITWL 354
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVL 172
++D+E+R+++G SE IQ +A++ A R+ +E++
Sbjct: 355 ETLADVEHRVSSGASEAIQTAAVVGAV---RNGVELM 388
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 115/269 (42%), Gaps = 86/269 (31%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP +L ++ HQDI++TI + VD ++ + + GT + + AL
Sbjct: 46 VEKYRPVSLSDVSGHQDILATI----NKFVD-SNRLPHLLFYGPPGTGKTSTILALARRI 100
Query: 163 NSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK----------SSYKLIILDEA 211
++ + VLELNASDDRGI +VR+ I FASTK + + +KLIILDEA
Sbjct: 101 YGHQNMRQMVLELNASDDRGIEVVREHIKTFASTKQIFTAGSSASRAGIAGFKLIILDEA 160
Query: 212 DAMTNDAQNALRR------------------------------KLPVTP----------- 230
DAMTN AQ ALRR + +P
Sbjct: 161 DAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLHEQDIRVLVD 220
Query: 231 -----DGKKAIIDLSD-------GDMRKVLNILQSAATAHA-----------------DE 261
+G K + D D GDMR+ LN+LQ+ + +
Sbjct: 221 KVIEEEGVKIMPDAVDSLVRLSKGDMRRALNVLQACHASSTPLQPRDGPKIPEQDIVRET 280
Query: 262 VNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ +T+YN V P I IL LL+ S
Sbjct: 281 ITTETIYNCVAAPPPDAIKKILSTLLSTS 309
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 44/67 (65%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K +GLAL DI+T +S + +LE+ +++ + ++D+E+R+++G SE IQ +A+
Sbjct: 318 INTLKAAQGLALADIITALSEELVKLEVKPQVMITWLETLADVEHRVSSGASEAIQTAAV 377
Query: 516 IAAFNSA 522
+ A +
Sbjct: 378 VGAVRNG 384
>gi|344301880|gb|EGW32185.1| DNA replication factor C [Spathaspora passalidarum NRRL Y-27907]
Length = 323
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 126/173 (72%), Gaps = 13/173 (7%)
Query: 279 ITNILRWLLN---ESMDLCYK-------INRFIDENELPHLLFYGPPGTGKTTTILACAR 328
+++ L W+ ES+D Y +++FI +LPHLLFYGPPGTGKT+TI+A AR
Sbjct: 1 MSDTLPWIEKYRPESLDDIYGQQEIITTVHKFIQTGKLPHLLFYGPPGTGKTSTIIAVAR 60
Query: 329 KLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTM--HKSSYKLIILDEADAMTND 386
++Y K + MVLELNASDDRGI +VR+QI FAST+ + +S+KLIILDEADAMTN
Sbjct: 61 EIYGK-NYKNMVLELNASDDRGIDVVRNQIKNFASTRQIFNQGNSFKLIILDEADAMTNA 119
Query: 387 AQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
AQN+LRRIIEKFT N RFCI+ NY K+ PA+ SRCTRFRF P+D+ I R+
Sbjct: 120 AQNSLRRIIEKFTKNCRFCILANYSHKLNPALISRCTRFRFHPIDTEAIRERI 172
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 105/192 (54%), Gaps = 27/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFCI+ NY K+ PA+ SRCTRFRF P+D+ I R+ VI +E+V++
Sbjct: 128 IEKFTKNCRFCILANYSHKLNPALISRCTRFRFHPIDTEAIRERIKVVITKEQVDIDAKA 187
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF------------TLLVS------- 101
A++ LS GDMR+ LN+LQ+ A A ++ D I+ T+L S
Sbjct: 188 VDALVQLSKGDMRRALNVLQACKAATAGSIDLDMIYECIGAPHPQDIETVLDSILKDDWT 247
Query: 102 ----RVEKYRPST----LDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ K++ + +D + DI++ ++ V ++ +SDIEY ++ G ++KI
Sbjct: 248 TAYITINKFKTTKGLALIDLIAGFVDILNNYKLNNKTRVGILKGLSDIEYGISKGGNDKI 307
Query: 154 QLSALIAAFNSA 165
Q SA+I SA
Sbjct: 308 QSSAIIGVIKSA 319
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 120/256 (46%), Gaps = 65/256 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP +LD++ Q+II+T+ I L L+ + GT + + A+
Sbjct: 8 IEKYRPESLDDIYGQQEIITTVHKFIQTGKLPHLL-------FYGPPGTGKTSTIIAVAR 60
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTM--HKSSYKLIILDEADAMTNDA 218
K VLELNASDDRGI +VR+QI FAST+ + +S+KLIILDEADAMTN A
Sbjct: 61 EIYGKNYKNMVLELNASDDRGIDVVRNQIKNFASTRQIFNQGNSFKLIILDEADAMTNAA 120
Query: 219 QNAL----------------------------------------------RRKLPVTP-- 230
QN+L R K+ +T
Sbjct: 121 QNSLRRIIEKFTKNCRFCILANYSHKLNPALISRCTRFRFHPIDTEAIRERIKVVITKEQ 180
Query: 231 ---DGKK--AIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
D K A++ LS GDMR+ LN+LQ+ A A ++ D +Y +G P +I +L
Sbjct: 181 VDIDAKAVDALVQLSKGDMRRALNVLQACKAATAGSIDLDMIYECIGAPHPQDIETVLDS 240
Query: 286 LLNESMDLCY-KINRF 300
+L + Y IN+F
Sbjct: 241 ILKDDWTTAYITINKF 256
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
YI I + K KGLAL D++ +++ ++ V ++ +SDIEY ++ G ++KIQ
Sbjct: 250 YITINKFKTTKGLALIDLIAGFVDILNNYKLNNKTRVGILKGLSDIEYGISKGGNDKIQS 309
Query: 513 SALIAAFNSA 522
SA+I SA
Sbjct: 310 SAIIGVIKSA 319
>gi|50309079|ref|XP_454545.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643680|emb|CAG99632.1| KLLA0E13201p [Kluyveromyces lactis]
Length = 329
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 90/143 (62%), Positives = 111/143 (77%), Gaps = 1/143 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +F+ E LPHLLFYGPPGTGKT+TI+A AR++Y + + MVLELNASDDRGI +VR+
Sbjct: 32 VRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIY-GSNYRNMVLELNASDDRGIDVVRN 90
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI +FAST+ + +KLIILDEADAMTN AQNALRRIIE++T N RFCI+ NY K+ P
Sbjct: 91 QIKEFASTRQIFSKGFKLIILDEADAMTNAAQNALRRIIERYTKNTRFCILANYAHKLTP 150
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
A+ SRCTRFRF PL I R+
Sbjct: 151 ALLSRCTRFRFQPLSEQAIERRI 173
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 119/257 (46%), Gaps = 67/257 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP TLD++ Q++++T+ + E L L+ + GT + + AL
Sbjct: 11 IEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLL-------FYGPPGTGKTSTIVALAR 63
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ + VLELNASDDRGI +VR+QI +FAST+ + +KLIILDEADAMTN AQN
Sbjct: 64 EIYGSNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTNAAQN 123
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR L
Sbjct: 124 ALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLK 183
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTVYNSVGYPTKTEITNIL 283
+ P A++ LS GDMR+ LN+LQ+A +EV ED +Y +G P ++ +L
Sbjct: 184 LDPQAHAALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYECIGAPHPRDLETML 243
Query: 284 RWLLNESM-DLCYKINR 299
+L + Y +N+
Sbjct: 244 ESILKDDWTTTTYTVNK 260
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 103/202 (50%), Gaps = 32/202 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T N RFCI+ NY K+TPA+ SRCTRFRF PL I R+ V+ +E + + P
Sbjct: 129 IERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKEHLKLDPQA 188
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTIF------------TLLVS--- 101
A++ LS GDMR+ LN+LQ+A +EV ED I+ T+L S
Sbjct: 189 HAALLRLSSGDMRRALNVLQAARATLDNPDTEEVTEDLIYECIGAPHPRDLETMLESILK 248
Query: 102 --------RVEKYRPST----LDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGT 149
V K R + +D + ++ E+ ++L+ ++SDIEY ++ G
Sbjct: 249 DDWTTTTYTVNKIRITKGLALIDMIEGIAGLLEQYELKPQTRIELLSRLSDIEYSISRGG 308
Query: 150 SEKIQLSALIAAFNSARDKLEV 171
++ IQ SA I + LEV
Sbjct: 309 TDSIQTSATIGTIKQCME-LEV 329
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 41/62 (66%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+ +I+I KGLAL D++ I+ L+ + E+ ++L+ ++SDIEY ++ G ++ IQ SA
Sbjct: 258 VNKIRITKGLALIDMIEGIAGLLEQYELKPQTRIELLSRLSDIEYSISRGGTDSIQTSAT 317
Query: 516 IA 517
I
Sbjct: 318 IG 319
>gi|322698624|gb|EFY90393.1| activator 1 subunit 3 [Metarhizium acridum CQMa 102]
Length = 921
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 97/148 (65%), Positives = 111/148 (75%), Gaps = 9/148 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+TILA AR++Y A MVLELNASDDRGI
Sbjct: 62 DILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGAANMRQMVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTK---TMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNV 402
+VR+QI FASTK TM S+ +KLIILDEADAMTN AQ ALRRI+EK+T N
Sbjct: 122 DVVREQIKTFASTKQIFTMGASAKSSIAGFKLIILDEADAMTNTAQMALRRIMEKYTVNT 181
Query: 403 RFCIICNYLSKIPPAIQSRCTRFRFGPL 430
RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 182 RFCIIANYSHKLSPALLSRCTRFRFSPL 209
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 84/135 (62%), Gaps = 21/135 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
+EKYRP+TLD++ HQDI++TI + VD + + + L G + S ++A
Sbjct: 46 IEKYRPATLDDVSGHQDILATI----NKFVD----SNRLPHLLLYGPPGTGKTSTILALA 97
Query: 161 --AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK---TMHKSS------YKLIILD 209
+ +A + VLELNASDDRGI +VR+QI FASTK TM S+ +KLIILD
Sbjct: 98 RRIYGAANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTMGASAKSSIAGFKLIILD 157
Query: 210 EADAMTNDAQNALRR 224
EADAMTN AQ ALRR
Sbjct: 158 EADAMTNTAQMALRR 172
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 103/209 (49%), Gaps = 45/209 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I ++ V+E+E V + +
Sbjct: 174 MEKYTVNTRFCIIANYSHKLSPALLSRCTRFRFSPLKEGDIRVLVEKVVEEENVQIGGEA 233
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA-------HADEVNEDTIFTLLVSRVEKYR------ 107
A+I LS GDMR+ LN+LQ+ + +A ++ E I +++ Y
Sbjct: 234 VDALIKLSKGDMRRALNVLQACHASSTPLQAKNAPKIPESEIKREMITTETIYNCIAAPP 293
Query: 108 PSTLDELVSH-------------------------QDIIST-------IEIPESMLVDLV 135
P + E+V+ DII+ +E+ +++ +
Sbjct: 294 PDAIKEIVTTLLNTSDVMSCLSTMNALKVTRGLALADIITALSEELVKLEVSPEVMISWL 353
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNS 164
++D+E+R+A G SE +Q A++ F S
Sbjct: 354 DGLADVEHRVAGGGSETVQTGAVVGVFPS 382
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+ +K+ +GLAL DI+T +S + +LE+ +++ + ++D+E+R+A G SE +Q A+
Sbjct: 317 MNALKVTRGLALADIITALSEELVKLEVSPEVMISWLDGLADVEHRVAGGGSETVQTGAV 376
Query: 516 IAAFNSARDKLEAPPDPQ 533
+ F S +A P P+
Sbjct: 377 VGVFPST---CQARPQPR 391
>gi|45190411|ref|NP_984665.1| AEL196Wp [Ashbya gossypii ATCC 10895]
gi|44983307|gb|AAS52489.1| AEL196Wp [Ashbya gossypii ATCC 10895]
gi|374107881|gb|AEY96788.1| FAEL196Wp [Ashbya gossypii FDAG1]
Length = 333
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 91/148 (61%), Positives = 113/148 (76%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + +F+ E LPHLLFYGPPGTGKT+TI A A+++Y K + MVLELNASDDRGI
Sbjct: 30 DVVETVRKFVQEGRLPHLLFYGPPGTGKTSTICALAKEIYGK-NYRNMVLELNASDDRGI 88
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI +FAST+ + +KLIILDEADAMT+ AQNALRRIIEK+T N RFCI+ NY
Sbjct: 89 DVVRNQIKEFASTRQIFSKGFKLIILDEADAMTSAAQNALRRIIEKYTKNTRFCILANYA 148
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
K+ PA+ SRCTRFRF PL + I R+
Sbjct: 149 HKLTPALLSRCTRFRFQPLAEAAIERRV 176
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 115/245 (46%), Gaps = 65/245 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP +LD++ +D++ T+ + E L L+ + GT + + AL
Sbjct: 14 IEKYRPDSLDDVYGQRDVVETVRKFVQEGRLPHLL-------FYGPPGTGKTSTICALAK 66
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ VLELNASDDRGI +VR+QI +FAST+ + +KLIILDEADAMT+ AQN
Sbjct: 67 EIYGKNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTSAAQN 126
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR L
Sbjct: 127 ALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLAEAAIERRVLSIMAHEHLQ 186
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATA---HADEVNEDTVYNSVGYPTKTEITNILR 284
+T D + A++ L+ GDMR+ LN+LQ+A A V ED VY+ VG P +I ++
Sbjct: 187 LTEDARAALLRLAAGDMRRALNVLQAAKATLDDPAQPVTEDVVYDCVGAPHPRDIETVVD 246
Query: 285 WLLNE 289
+L +
Sbjct: 247 SILRD 251
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 105/195 (53%), Gaps = 30/195 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY K+TPA+ SRCTRFRF PL + I R+ ++ E + +T D
Sbjct: 132 IEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLAEAAIERRVLSIMAHEHLQLTEDA 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA---HADEVNEDTIFTLL------------------ 99
+ A++ L+ GDMR+ LN+LQ+A A V ED ++ +
Sbjct: 192 RAALLRLAAGDMRRALNVLQAAKATLDDPAQPVTEDVVYDCVGAPHPRDIETVVDSILRD 251
Query: 100 --------VSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTS 150
V RV R L +++ +++++ ++ + + L+ ++DIEY ++ G S
Sbjct: 252 DWATALDTVRRVRVARGLALVDMIHGAVELLTSYDLKQPTRIALLTHLADIEYAVSKGGS 311
Query: 151 EKIQLSALIAAFNSA 165
+KIQ SA IAA S+
Sbjct: 312 DKIQTSAAIAAIKSS 326
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 42/67 (62%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++ +++ +GLAL D++ L+ ++ + + L+ ++DIEY ++ G S+KIQ SA
Sbjct: 260 VRRVRVARGLALVDMIHGAVELLTSYDLKQPTRIALLTHLADIEYAVSKGGSDKIQTSAA 319
Query: 516 IAAFNSA 522
IAA S+
Sbjct: 320 IAAIKSS 326
>gi|392574508|gb|EIW67644.1| hypothetical protein TREMEDRAFT_69661 [Tremella mesenterica DSM
1558]
Length = 350
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 90/149 (60%), Positives = 110/149 (73%), Gaps = 1/149 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI+ LPHLL YGPPGTGKT+T+LA AR+LY + +LELNASDDRGI
Sbjct: 49 DITNTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPP-YQKHILELNASDDRGI 107
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRDQI FA TK + +KL+ILDEAD MT AQ+ALRR+IE T NVRFCI+CNY+
Sbjct: 108 DVVRDQIKSFAMTKVLFSKGFKLVILDEADMMTQAAQSALRRVIETHTKNVRFCILCNYV 167
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
+KI PAIQSRCTRFRF PL + ++D
Sbjct: 168 NKITPAIQSRCTRFRFSPLPEKEVQRKVD 196
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 116/192 (60%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE T NVRFCI+CNY++KITPAIQSRCTRFRF PL + ++D V+E+E VN+T DG
Sbjct: 151 IETHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEVQRKVDDVVEKEGVNLTDDG 210
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------- 98
+ A++ LS GDMR+ LN+LQ+ A+ D+++E ++T
Sbjct: 211 RAALLKLSKGDMRRALNVLQACHAAY-DKIDEMAVYTCTGNPHPRDIERVVQSMMADEFG 269
Query: 99 ----LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
L++ ++ + L +L+S D + TIE+P S V L+ + E+RL+ G SEK+
Sbjct: 270 TSYSLITSLKLEKGLALQDLISGAYDFLQTIEMPPSARVYLLDHLGSCEHRLSLGGSEKM 329
Query: 154 QLSALIAAFNSA 165
QL+AL+ AF A
Sbjct: 330 QLTALLGAFKIA 341
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 122/252 (48%), Gaps = 63/252 (25%)
Query: 101 SRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
+RVEKYRP+TLDE+VSHQDI +TIE I L L+L GT + + AL
Sbjct: 31 NRVEKYRPNTLDEVVSHQDITNTIEKFIEAGRLPHLLLYGP-------PGTGKTSTVLAL 83
Query: 159 IAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
+ +LELNASDDRGI +VRDQI FA TK + +KL+ILDEAD MT A
Sbjct: 84 ARRLYGPPYQKHILELNASDDRGIDVVRDQIKSFAMTKVLFSKGFKLVILDEADMMTQAA 143
Query: 219 QNALRR-----------------------------------KLP---------------- 227
Q+ALRR LP
Sbjct: 144 QSALRRVIETHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEVQRKVDDVVEKEG 203
Query: 228 --VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
+T DG+ A++ LS GDMR+ LN+LQ+ A+ D+++E VY G P +I +++
Sbjct: 204 VNLTDDGRAALLKLSKGDMRRALNVLQACHAAY-DKIDEMAVYTCTGNPHPRDIERVVQS 262
Query: 286 LLNESMDLCYKI 297
++ + Y +
Sbjct: 263 MMADEFGTSYSL 274
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I +K+EKGLAL D+++ + +E+P S V L+ + E+RL+ G SEK+QL
Sbjct: 272 YSLITSLKLEKGLALQDLISGAYDFLQTIEMPPSARVYLLDHLGSCEHRLSLGGSEKMQL 331
Query: 513 SALIAAFNSA 522
+AL+ AF A
Sbjct: 332 TALLGAFKIA 341
>gi|388583685|gb|EIM23986.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 335
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 93/143 (65%), Positives = 108/143 (75%), Gaps = 1/143 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
IN+FI + LPHLLFYGPPGTGKT+TILA A+K+Y + VLELNASDDRGI +VRD
Sbjct: 38 INQFIQKQRLPHLLFYGPPGTGKTSTILAIAKKIY-GGNWKRNVLELNASDDRGIDVVRD 96
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FA T+T+ +KLIILDEAD MT AQ ALRRIIE +T RFCIICNY++KI P
Sbjct: 97 QIKSFAQTRTLFSDGFKLIILDEADLMTQQAQGALRRIIEHYTPTTRFCIICNYVNKITP 156
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
AI SRCTRFRF PL + + RL
Sbjct: 157 AIMSRCTRFRFSPLPYAHLDKRL 179
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 111/195 (56%), Gaps = 28/195 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE +T RFCIICNY++KITPAI SRCTRFRF PL + + RL VIE E V + D
Sbjct: 135 IEHYTPTTRFCIICNYVNKITPAIMSRCTRFRFSPLPYAHLDKRLVEVIENEAVQIDDDA 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-----------------AHADEVNEDTIFTLL---- 99
KKA+++L+ GDMR+ LNILQ+ T A E E + TLL
Sbjct: 195 KKALLNLTKGDMRRALNILQACHTACMPERISIKDVYNVTAAPQPEAIEYIVNTLLKDEI 254
Query: 100 ------VSRVEKYRPSTL-DELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+ +V++ L D L D I TIE P + V ++ ++++E+RL+ G+SE
Sbjct: 255 STCYSKIHQVKRQNGLALQDILTGVYDYIQTIEFPTATKVAILELLAEVEHRLSKGSSET 314
Query: 153 IQLSALIAAFNSARD 167
IQLSALIA+F + D
Sbjct: 315 IQLSALIASFKLSLD 329
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 123/261 (47%), Gaps = 64/261 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+ LD++VSH +II TI I + L L+ + GT + + A+
Sbjct: 17 VEKYRPNELDDVVSHTEIIQTINQFIQKQRLPHLL-------FYGPPGTGKTSTILAIAK 69
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
K VLELNASDDRGI +VRDQI FA T+T+ +KLIILDEAD MT AQ
Sbjct: 70 KIYGGNWKRNVLELNASDDRGIDVVRDQIKSFAQTRTLFSDGFKLIILDEADLMTQQAQG 129
Query: 221 ALRRKL-----------------PVTP--------------------------------- 230
ALRR + +TP
Sbjct: 130 ALRRIIEHYTPTTRFCIICNYVNKITPAIMSRCTRFRFSPLPYAHLDKRLVEVIENEAVQ 189
Query: 231 ---DGKKAIIDLSDGDMRKVLNILQSAATAHADE-VNEDTVYNSVGYPTKTEITNILRWL 286
D KKA+++L+ GDMR+ LNILQ+ TA E ++ VYN P I I+ L
Sbjct: 190 IDDDAKKALLNLTKGDMRRALNILQACHTACMPERISIKDVYNVTAAPQPEAIEYIVNTL 249
Query: 287 LNESMDLCY-KINRFIDENEL 306
L + + CY KI++ +N L
Sbjct: 250 LKDEISTCYSKIHQVKRQNGL 270
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 49/72 (68%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y KI ++K + GLAL DILT + + +E P + V ++ ++++E+RL+ G+SE IQL
Sbjct: 258 YSKIHQVKRQNGLALQDILTGVYDYIQTIEFPTATKVAILELLAEVEHRLSKGSSETIQL 317
Query: 513 SALIAAFNSARD 524
SALIA+F + D
Sbjct: 318 SALIASFKLSLD 329
>gi|336258765|ref|XP_003344190.1| hypothetical protein SMAC_08123 [Sordaria macrospora k-hell]
gi|380095124|emb|CCC07626.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 389
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 95/149 (63%), Positives = 111/149 (74%), Gaps = 10/149 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+TILA AR++Y A MVLELNASDDRGI
Sbjct: 62 DILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGTANMRQMVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTK---TMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+VR+QI FASTK T+ S+ +KLIILDEADAMT+ AQ ALRRI+EK+T N
Sbjct: 122 DVVREQIKTFASTKQIFTLGSSASRSGLAGFKLIILDEADAMTSTAQMALRRIMEKYTAN 181
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 182 TRFCIIANYSHKLSPALLSRCTRFRFSPL 210
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 108/217 (49%), Gaps = 48/217 (22%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VIE+E V + PD
Sbjct: 175 MEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEKDIRVLVDKVIEEENVQIMPDA 234
Query: 61 KKAIIDLSDGDMRKVLNILQSA-------------ATAHADEVNE----DTIFTLLVSRV 103
A++ LS GDMR+ LN+LQ+ A D V E TI+ + +
Sbjct: 235 TDALVKLSKGDMRRALNVLQACHASSTPLQPKDGPKVAEKDIVRETITIQTIYNCVAAPP 294
Query: 104 EKYRPSTLDELVSHQDI------ISTIEIPESM-LVDLVLKMSD---------------- 140
L L+S D+ I+T++I + + L D++ +S+
Sbjct: 295 PDAIKKILSTLLSTSDVTTCLSTINTLKISQGLALADIITALSEEIVKLEVKPQVMITWL 354
Query: 141 -----IEYRLAAGTSEKIQLSALIAAFNSARDKLEVL 172
IE+R+A+G E IQ A++ A R+ +E++
Sbjct: 355 DALANIEHRVASGAGEMIQTGAVVGAI---RNGVELM 388
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 82/136 (60%), Gaps = 22/136 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
VEKYRP +L ++ HQDI++TI + VD + + + L G + S ++A
Sbjct: 46 VEKYRPVSLADVSGHQDILATI----NKFVD----SNRLPHLLLYGPPGTGKTSTILALA 97
Query: 161 --AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK---TMHKSS-------YKLIIL 208
+ +A + VLELNASDDRGI +VR+QI FASTK T+ S+ +KLIIL
Sbjct: 98 RRIYGTANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGSSASRSGLAGFKLIIL 157
Query: 209 DEADAMTNDAQNALRR 224
DEADAMT+ AQ ALRR
Sbjct: 158 DEADAMTSTAQMALRR 173
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 43/67 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +KI +GLAL DI+T +S + +LE+ +++ + +++IE+R+A+G E IQ A+
Sbjct: 318 INTLKISQGLALADIITALSEEIVKLEVKPQVMITWLDALANIEHRVASGAGEMIQTGAV 377
Query: 516 IAAFNSA 522
+ A +
Sbjct: 378 VGAIRNG 384
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 17/80 (21%)
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSA-------------ATAHADEVNE----DTVYNS 270
+ PD A++ LS GDMR+ LN+LQ+ A D V E T+YN
Sbjct: 230 IMPDATDALVKLSKGDMRRALNVLQACHASSTPLQPKDGPKVAEKDIVRETITIQTIYNC 289
Query: 271 VGYPTKTEITNILRWLLNES 290
V P I IL LL+ S
Sbjct: 290 VAAPPPDAIKKILSTLLSTS 309
>gi|340518366|gb|EGR48607.1| replication factor C, subunit 3 [Trichoderma reesei QM6a]
Length = 391
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 95/150 (63%), Positives = 110/150 (73%), Gaps = 11/150 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F++ N LPHLL YGPPGTGKT+TILA AR++Y A MVLELNASDDRGI
Sbjct: 62 DILATINKFVESNRLPHLLLYGPPGTGKTSTILALARRIYGTANMRQMVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTK---TMHK--------SSYKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VR+QI FASTK TM + +KLIILDEADAMTN AQ ALRRI+EK+T
Sbjct: 122 DVVREQIKTFASTKQIFTMGGGAAKGNSIAGFKLIILDEADAMTNTAQMALRRIMEKYTA 181
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 182 NTRFCIIANYAHKLSPALLSRCTRFRFSPL 211
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 82/137 (59%), Gaps = 23/137 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
VEKYRP TLD++ HQDI++TI + ++ + + + L G + S ++A
Sbjct: 46 VEKYRPVTLDDVSGHQDILATI--------NKFVESNRLPHLLLYGPPGTGKTSTILALA 97
Query: 161 --AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK---TMHK--------SSYKLII 207
+ +A + VLELNASDDRGI +VR+QI FASTK TM + +KLII
Sbjct: 98 RRIYGTANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTMGGGAAKGNSIAGFKLII 157
Query: 208 LDEADAMTNDAQNALRR 224
LDEADAMTN AQ ALRR
Sbjct: 158 LDEADAMTNTAQMALRR 174
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 45/210 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I ++ V+E+E V + +
Sbjct: 176 MEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLKEGDIRVLVEKVVEEEGVKIQGEA 235
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA------------DEVNEDTIFT-LLVSRVEKYR 107
A++ LS GDMR+ LN+LQ+ + E+ +TI T + + + +
Sbjct: 236 VDALVKLSKGDMRRALNVLQACHASSTPLRLKNEPKPPESEIQRETITTETIYNCIAAPQ 295
Query: 108 PSTLDE----LVSHQDIIST----------------------------IEIPESMLVDLV 135
P + E L+S D+ S +E+ ++ +
Sbjct: 296 PDAIKEIMETLLSTPDVTSCLNTINALKTTQGLALADIITALMEQLTKLEVSAEAMITWL 355
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSA 165
+++IE+R+A G SE +Q A++
Sbjct: 356 EGLAEIEHRVAGGGSEMVQTGAVVGVIRGG 385
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K +GLAL DI+T + + +LE+ ++ + +++IE+R+A G SE +Q A+
Sbjct: 319 INALKTTQGLALADIITALMEQLTKLEVSAEAMITWLEGLAEIEHRVAGGGSEMVQTGAV 378
Query: 516 IAAFNSA 522
+
Sbjct: 379 VGVIRGG 385
>gi|407408177|gb|EKF31712.1| replication factor C, subunit 3, putative [Trypanosoma cruzi
marinkellei]
Length = 355
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 91/159 (57%), Positives = 116/159 (72%), Gaps = 9/159 (5%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ R +D LPHLLFYGPPGTGKTTTI ACA L+ K + A VLE+NASDDRGI
Sbjct: 37 DILSTTRRLMDSGNLPHLLFYGPPGTGKTTTIKACAYYLFGKDRIRANVLEMNASDDRGI 96
Query: 352 GIVRDQIFQFASTKTMHKSS---------YKLIILDEADAMTNDAQNALRRIIEKFTTNV 402
+VR Q+ +FAST + + +S +KL+ILDEAD M+ DAQ ALRRIIEK+T NV
Sbjct: 97 DVVRQQVREFASTSSFYFASAPAASTIAAFKLVILDEADQMSGDAQAALRRIIEKYTKNV 156
Query: 403 RFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
RFCI+CN+++KI PA+QSRCTRFRF P+ + ++ RL +
Sbjct: 157 RFCILCNHINKIIPALQSRCTRFRFAPVKKNAMLPRLKF 195
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 111/196 (56%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCI+CN+++KI PA+QSRCTRFRF P+ + ++ RL +V ++E V T G
Sbjct: 149 IEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKNAMLPRLKFVAQEEGVRFTDGG 208
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------------------LV 100
A LS+GD+R+ LN +Q++A + A E+ E++++ +
Sbjct: 209 LVAAFRLSNGDLRRCLNTMQASAMS-AGEITEESVYRVTGNPTPADVRGIVEDMIAHDFA 267
Query: 101 SRVEKYRPSTLDELVSHQD-------IISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ EK + + ++ VS D I+ +++P+ L++K++D+EY A G E
Sbjct: 268 ASWEKVQQTVSEKGVSSTDLVREVHHIVMAMDLPQESKCFLLMKLADVEYYAAGGAKETT 327
Query: 154 QLSALIAAFNSARDKL 169
+S ++ AF ++ L
Sbjct: 328 CISGILGAFQLVKEAL 343
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 124/263 (47%), Gaps = 72/263 (27%)
Query: 87 ADEVNEDTIFTLLVSR---VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEY 143
A+E T+ T+ S VEKYRP TLDE+V+H+DI+ST L+D + + +
Sbjct: 2 ANEGKNSTVHTVKSSTLPWVEKYRPVTLDEVVAHEDILSTTR----RLMD-SGNLPHLLF 56
Query: 144 RLAAGTSEKIQLSALIAA-FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS 202
GT + + A F R + VLE+NASDDRGI +VR Q+ +FAST + + +S
Sbjct: 57 YGPPGTGKTTTIKACAYYLFGKDRIRANVLEMNASDDRGIDVVRQQVREFASTSSFYFAS 116
Query: 203 ---------YKLIILDEADAMTNDAQNALRRKL--------------------------- 226
+KL+ILDEAD M+ DAQ ALRR +
Sbjct: 117 APAASTIAAFKLVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRC 176
Query: 227 ------PV--------------------TPDGKKAIIDLSDGDMRKVLNILQSAATAHAD 260
PV T G A LS+GD+R+ LN +Q++A + A
Sbjct: 177 TRFRFAPVKKNAMLPRLKFVAQEEGVRFTDGGLVAAFRLSNGDLRRCLNTMQASAMS-AG 235
Query: 261 EVNEDTVYNSVGYPTKTEITNIL 283
E+ E++VY G PT ++ I+
Sbjct: 236 EITEESVYRVTGNPTPADVRGIV 258
>gi|242066704|ref|XP_002454641.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
gi|241934472|gb|EES07617.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
Length = 362
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/153 (60%), Positives = 118/153 (77%), Gaps = 4/153 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+R +EN LPHLL YGPPGTGKT+TILA ARKLY +Q++ M+LELNASD+RGI
Sbjct: 58 DIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLY-GSQYSNMILELNASDERGI 116
Query: 352 GIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
+VR QI FA +++ + S KL++LDEADAMT DAQ ALRR+IEK+T + RF +IC
Sbjct: 117 DVVRQQIQDFAGARSLSFGARPSVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALIC 176
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
N+++KI PA+QSRCTRFRF PLD S + RL +
Sbjct: 177 NHVNKIIPALQSRCTRFRFAPLDGSHVRERLQH 209
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 113/196 (57%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T + RF +ICN+++KI PA+QSRCTRFRF PLD S + RL ++I+ E ++V G
Sbjct: 163 IEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSEGLSVDEGG 222
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL----LVSRVEKYRPSTLDELVS 116
A++ LS+GDMRK LNILQS A + ++ E+ ++ + + +E+ L+E S
Sbjct: 223 LTALVRLSNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPMPNDIERIAFWLLNEPFS 281
Query: 117 HQ----------------DIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
DII IE+P + V L+ ++DIEYRL+ ++K+
Sbjct: 282 TSFKHISDMKMRKGLALVDIIREVTMFVFKIEMPSDVRVKLINNLADIEYRLSFACNDKL 341
Query: 154 QLSALIAAFNSARDKL 169
QL ALI+AF R +
Sbjct: 342 QLGALISAFTDTRTAM 357
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 116/252 (46%), Gaps = 66/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +L ++ +H+DI+ TI+ E+ L L+L GT + + A+
Sbjct: 42 VEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGP-------PGTGKTSTILAVAR 94
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTND 217
++ +LELNASD+RGI +VR QI FA +++ + S KL++LDEADAMT D
Sbjct: 95 KLYGSQYSNMILELNASDERGIDVVRQQIQDFAGARSLSFGARPSVKLVLLDEADAMTKD 154
Query: 218 AQNALRR----------------------------------------------------- 224
AQ ALRR
Sbjct: 155 AQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSE 214
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
L V G A++ LS+GDMRK LNILQS A + ++ E+ VY G P +I I
Sbjct: 215 GLSVDEGGLTALVRLSNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPMPNDIERIAF 273
Query: 285 WLLNESMDLCYK 296
WLLNE +K
Sbjct: 274 WLLNEPFSTSFK 285
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 52/76 (68%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
+ I ++K+ KGLAL DI+ E+++ V ++E+P + V L+ ++DIEYRL+ ++K+QL
Sbjct: 284 FKHISDMKMRKGLALVDIIREVTMFVFKIEMPSDVRVKLINNLADIEYRLSFACNDKLQL 343
Query: 513 SALIAAFNSARDKLEA 528
ALI+AF R + A
Sbjct: 344 GALISAFTDTRTAMVA 359
>gi|366988323|ref|XP_003673928.1| hypothetical protein NCAS_0A09890 [Naumovozyma castellii CBS 4309]
gi|342299791|emb|CCC67547.1| hypothetical protein NCAS_0A09890 [Naumovozyma castellii CBS 4309]
Length = 336
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 91/143 (63%), Positives = 112/143 (78%), Gaps = 1/143 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +F+ E +LPHLLFYGPPGTGKT+TI+A AR++Y + ++ MVLELNASDDRGI +VR+
Sbjct: 37 VRKFLAEGKLPHLLFYGPPGTGKTSTIVALAREIYGR-NYSNMVLELNASDDRGIDVVRN 95
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+ + +KLIILDEADAMTN AQNALRRIIEK+T N RFCI+ NY K+ P
Sbjct: 96 QIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRIIEKYTKNTRFCILANYSHKLTP 155
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
A+ SRCTRFRF PL I R+
Sbjct: 156 ALLSRCTRFRFQPLPREAIEMRI 178
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 117/252 (46%), Gaps = 66/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD++ ++++T+ + E L L+ + GT + + AL
Sbjct: 16 VEKYRPETLDDVYGQTEVVTTVRKFLAEGKLPHLL-------FYGPPGTGKTSTIVALAR 68
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
VLELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQN
Sbjct: 69 EIYGRNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQN 128
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR L
Sbjct: 129 ALRRIIEKYTKNTRFCILANYSHKLTPALLSRCTRFRFQPLPREAIEMRIANVLVHENLK 188
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQ-SAATAH---ADEVNEDTVYNSVGYPTKTEITNIL 283
++ + K+A+I LS GDMR+VLN+LQ S AT DE++ + +Y G P ++ +L
Sbjct: 189 LSDEAKEALITLSQGDMRRVLNVLQASKATLDDPVKDEIDAEVIYECCGAPRPNDLKTVL 248
Query: 284 RWLLNESMDLCY 295
+ +L + Y
Sbjct: 249 KSILEDDWSTAY 260
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 105/197 (53%), Gaps = 32/197 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY K+TPA+ SRCTRFRF PL I R+ V+ E + ++ +
Sbjct: 134 IEKYTKNTRFCILANYSHKLTPALLSRCTRFRFQPLPREAIEMRIANVLVHENLKLSDEA 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--Q 118
K+A+I LS GDMR+VLN+LQ++ D V ++ ++ RP+ L ++ +
Sbjct: 194 KEALITLSQGDMRRVLNVLQASKATLDDPVKDEIDAEVIYECCGAPRPNDLKTVLKSILE 253
Query: 119 DIIST----------------IEIPESML--------------VDLVLKMSDIEYRLAAG 148
D ST I++ E ++ + L+ K+ DIEY ++ G
Sbjct: 254 DDWSTAYYTLTKIRSLKGLALIDLIEGIVKILEDYELKNELTRITLLTKLGDIEYAISKG 313
Query: 149 TSEKIQLSALIAAFNSA 165
+EKIQ SA+I A S+
Sbjct: 314 GNEKIQSSAVIGAIKSS 330
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML-VDLVLKMSDIEYRLAAGTSEKIQ 511
Y + +I+ KGLAL D++ I ++ E+ + + L+ K+ DIEY ++ G +EKIQ
Sbjct: 260 YYTLTKIRSLKGLALIDLIEGIVKILEDYELKNELTRITLLTKLGDIEYAISKGGNEKIQ 319
Query: 512 LSALIAAFNSA 522
SA+I A S+
Sbjct: 320 SSAVIGAIKSS 330
>gi|219363377|ref|NP_001136580.1| replication factor C subunit 3 [Zea mays]
gi|194696262|gb|ACF82215.1| unknown [Zea mays]
gi|413939151|gb|AFW73702.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 92/153 (60%), Positives = 118/153 (77%), Gaps = 4/153 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+R +EN LPHLL YGPPGTGKT+TILA ARKLY +Q++ M+LELNASD+RGI
Sbjct: 58 DIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLY-GSQYSNMILELNASDERGI 116
Query: 352 GIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
+VR QI FA +++ + S KL++LDEADAMT DAQ ALRR+IEK+T + RF +IC
Sbjct: 117 DVVRQQIQDFAGARSLSFGARPSVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALIC 176
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
N+++KI PA+QSRCTRFRF PLD S + RL +
Sbjct: 177 NHVNKIIPALQSRCTRFRFAPLDGSHVRERLQH 209
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 110/193 (56%), Gaps = 28/193 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T + RF +ICN+++KI PA+QSRCTRFRF PLD S + RL ++I+ E ++V G
Sbjct: 163 IEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSEGLSVDDGG 222
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL----LVSRVEKYRPSTLDELVS 116
A++ LS+GDMRK LNILQS A + ++ E+ ++ + +E+ L+E S
Sbjct: 223 LTALVRLSNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPMPKDIEQIAFWLLNEPFS 281
Query: 117 HQ----------------DIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
DII I++P + V L+ ++DIEYRL+ ++K+
Sbjct: 282 TSFKYISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRVKLINDLADIEYRLSFACNDKL 341
Query: 154 QLSALIAAFNSAR 166
QL ALI+ F R
Sbjct: 342 QLGALISTFTDTR 354
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 116/252 (46%), Gaps = 66/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +L ++ +H+DI+ TI+ E+ L L+L GT + + A+
Sbjct: 42 VEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGP-------PGTGKTSTILAVAR 94
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTND 217
++ +LELNASD+RGI +VR QI FA +++ + S KL++LDEADAMT D
Sbjct: 95 KLYGSQYSNMILELNASDERGIDVVRQQIQDFAGARSLSFGARPSVKLVLLDEADAMTKD 154
Query: 218 AQNALRR----------------------------------------------------- 224
AQ ALRR
Sbjct: 155 AQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSE 214
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
L V G A++ LS+GDMRK LNILQS A + ++ E+ VY G P +I I
Sbjct: 215 GLSVDDGGLTALVRLSNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPMPKDIEQIAF 273
Query: 285 WLLNESMDLCYK 296
WLLNE +K
Sbjct: 274 WLLNEPFSTSFK 285
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 50/73 (68%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I ++K+ KGLAL DI+ E+++ V ++++P + V L+ ++DIEYRL+ ++K+QL AL
Sbjct: 287 ISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRVKLINDLADIEYRLSFACNDKLQLGAL 346
Query: 516 IAAFNSARDKLEA 528
I+ F R + A
Sbjct: 347 ISTFTDTRTAMVA 359
>gi|225679164|gb|EEH17448.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb03]
Length = 391
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 95/150 (63%), Positives = 107/150 (71%), Gaps = 11/150 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRFID N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 64 DIIGTINRFIDSNRLPHLLLYGPPGTGKTSTILALARRIYGVKNMRQMVLELNASDDRGI 123
Query: 352 GIVRDQIFQFASTKTMHK-----------SSYKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VRDQI FASTK + ++KLIILDEADAMT AQ ALRRI+EK+T
Sbjct: 124 DVVRDQIKTFASTKQIFSMAPVAKSESSLGAFKLIILDEADAMTATAQMALRRIMEKYTA 183
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 184 NARFCIIANYTHKLSPALLSRCTRFRFSPL 213
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 102/198 (51%), Gaps = 44/198 (22%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I + ++ VIE+E+V + P+
Sbjct: 178 MEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRALVNQVIEKEQVRIQPEA 237
Query: 61 KKAIIDLSDGDMRKVLNILQSA----------------ATAHADEVNEDTIFTLLVSRVE 104
++++LS GDMR+ LN+LQ+ +A + V+++TI+T + +
Sbjct: 238 IDSLVELSKGDMRRALNVLQACHASSIPLPMKNAPKDRPSAEHETVSQETIYTCIAAPHP 297
Query: 105 KYRPSTLDELVSHQDIIST----------------------------IEIPESMLVDLVL 136
+ + L++ D+ S IE+P + V +
Sbjct: 298 SDIKTIITALLTTSDVTSCLNTIQTLKSNKGLALVDILTALSAELQRIEVPAAARVVWME 357
Query: 137 KMSDIEYRLAAGTSEKIQ 154
++DIE+RLA+G E +Q
Sbjct: 358 GLADIEWRLASGGGEMVQ 375
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 119/271 (43%), Gaps = 90/271 (33%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP++LD++ H DII TI I + L L+L GT + + AL
Sbjct: 48 VEKYRPNSLDDVSGHHDIIGTINRFIDSNRLPHLLLYGP-------PGTGKTSTILALAR 100
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK-----------SSYKLIIL 208
++ + VLELNASDDRGI +VRDQI FASTK + ++KLIIL
Sbjct: 101 RIYGVKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPVAKSESSLGAFKLIIL 160
Query: 209 DEADAMTNDAQNALRR-------------------------------------------- 224
DEADAMT AQ ALRR
Sbjct: 161 DEADAMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRA 220
Query: 225 ---------KLPVTPDGKKAIIDLSDGDMRKVLNILQSA----------------ATAHA 259
++ + P+ ++++LS GDMR+ LN+LQ+ +A
Sbjct: 221 LVNQVIEKEQVRIQPEAIDSLVELSKGDMRRALNVLQACHASSIPLPMKNAPKDRPSAEH 280
Query: 260 DEVNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ V+++T+Y + P ++I I+ LL S
Sbjct: 281 ETVSQETIYTCIAAPHPSDIKTIITALLTTS 311
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
IQ +K KGLAL DILT +S + R+E+P + V + ++DIE+RLA+G E +Q
Sbjct: 320 IQTLKSNKGLALVDILTALSAELQRIEVPAAARVVWMEGLADIEWRLASGGGEMVQ 375
>gi|195628076|gb|ACG35868.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 92/153 (60%), Positives = 118/153 (77%), Gaps = 4/153 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+R +EN LPHLL YGPPGTGKT+TILA ARKLY +Q++ M+LELNASD+RGI
Sbjct: 58 DIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLY-GSQYSNMILELNASDERGI 116
Query: 352 GIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
+VR QI FA +++ + S KL++LDEADAMT DAQ ALRR+IEK+T + RF +IC
Sbjct: 117 DVVRQQIQDFAGARSLSFGARPSVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALIC 176
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
N+++KI PA+QSRCTRFRF PLD S + RL +
Sbjct: 177 NHVNKIIPALQSRCTRFRFAPLDGSHVRERLQH 209
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 110/193 (56%), Gaps = 28/193 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T + RF +ICN+++KI PA+QSRCTRFRF PLD S + RL ++I+ E ++V G
Sbjct: 163 IEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSEGLSVDDGG 222
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL----LVSRVEKYRPSTLDELVS 116
A++ LS+GDMRK LNILQS A + ++ E+ ++ + +E+ L+E S
Sbjct: 223 LTALVRLSNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPMPKDIEQIAFWLLNEPFS 281
Query: 117 HQ----------------DIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
DII I++P + V L+ ++DIEYRL+ ++K+
Sbjct: 282 TSFKYISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRVKLINNLADIEYRLSFACNDKL 341
Query: 154 QLSALIAAFNSAR 166
QL ALI+ F R
Sbjct: 342 QLGALISTFTDTR 354
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 116/252 (46%), Gaps = 66/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +L ++ +H+DI+ TI+ E+ L L+L GT + + A+
Sbjct: 42 VEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGP-------PGTGKTSTILAVAR 94
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTND 217
++ +LELNASD+RGI +VR QI FA +++ + S KL++LDEADAMT D
Sbjct: 95 KLYGSQYSNMILELNASDERGIDVVRQQIQDFAGARSLSFGARPSVKLVLLDEADAMTKD 154
Query: 218 AQNALRR----------------------------------------------------- 224
AQ ALRR
Sbjct: 155 AQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSE 214
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
L V G A++ LS+GDMRK LNILQS A + ++ E+ VY G P +I I
Sbjct: 215 GLSVDDGGLTALVRLSNGDMRKALNILQSTHMA-SQQITEEAVYLCTGNPMPKDIEQIAF 273
Query: 285 WLLNESMDLCYK 296
WLLNE +K
Sbjct: 274 WLLNEPFSTSFK 285
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 50/73 (68%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I ++K+ KGLAL DI+ E+++ V ++++P + V L+ ++DIEYRL+ ++K+QL AL
Sbjct: 287 ISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRVKLINNLADIEYRLSFACNDKLQLGAL 346
Query: 516 IAAFNSARDKLEA 528
I+ F R + A
Sbjct: 347 ISTFTDTRTAMVA 359
>gi|358391339|gb|EHK40743.1| hypothetical protein TRIATDRAFT_127338 [Trichoderma atroviride IMI
206040]
Length = 391
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 92/150 (61%), Positives = 110/150 (73%), Gaps = 11/150 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+++N LPHLL YGPPGTGKT+TILA AR++Y + MVLELNASDDRGI
Sbjct: 62 DILATINKFVEQNRLPHLLLYGPPGTGKTSTILALARRIYGVSNMRQMVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTKTMHK-----------SSYKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VR+QI FASTK + + +KLIILDEADAMTN AQ ALRRI+EK+T
Sbjct: 122 DVVREQIKTFASTKQIFSMGGGASKSNSIAGFKLIILDEADAMTNTAQMALRRIMEKYTA 181
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 182 NTRFCIIANYAHKLSPALLSRCTRFRFSPL 211
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 81/135 (60%), Gaps = 19/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL+++ HQDI++TI + ++ L L+L + TS + L+ I
Sbjct: 46 VEKYRPVTLEDVSGHQDILATINKFVEQNRLPHLLLYGPPGTGK----TSTILALARRIY 101
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-----------SSYKLIILD 209
++ R VLELNASDDRGI +VR+QI FASTK + + +KLIILD
Sbjct: 102 GVSNMRQM--VLELNASDDRGIDVVREQIKTFASTKQIFSMGGGASKSNSIAGFKLIILD 159
Query: 210 EADAMTNDAQNALRR 224
EADAMTN AQ ALRR
Sbjct: 160 EADAMTNTAQMALRR 174
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 45/199 (22%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I ++ V+E+E V + +
Sbjct: 176 MEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLKEGDIRVLVEKVVEEENVKIQGEA 235
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA------------DEVNEDTIFT-LLVSRVEKYR 107
A++ LS GDMR+ LN+LQ+ + E+ +TI T + + + +
Sbjct: 236 VDALVKLSKGDMRRALNVLQACHASSTPLRLKNEPKPPESEIKRETITTETIYNCIAAPQ 295
Query: 108 PSTLDELV-------------------------SHQDIISTI-------EIPESMLVDLV 135
P + E+V + DII+ + E+ +++ +
Sbjct: 296 PEAVKEIVETLLSTPDVTSCLNTINALKTTQGLALADIITAVMEQLTKLEVNAEVMITWL 355
Query: 136 LKMSDIEYRLAAGTSEKIQ 154
+++IE+R+A G SE +Q
Sbjct: 356 AGLAEIEHRVAGGASEMVQ 374
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
I +K +GLAL DI+T + + +LE+ +++ + +++IE+R+A G SE +Q
Sbjct: 319 INALKTTQGLALADIITAVMEQLTKLEVNAEVMITWLAGLAEIEHRVAGGASEMVQ 374
>gi|254579519|ref|XP_002495745.1| ZYRO0C02090p [Zygosaccharomyces rouxii]
gi|238938636|emb|CAR26812.1| ZYRO0C02090p [Zygosaccharomyces rouxii]
Length = 338
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 94/158 (59%), Positives = 117/158 (74%), Gaps = 8/158 (5%)
Query: 289 ESMDLCYK-------INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVL 341
ES+D Y I +F++ +LPHLLFYGPPGTGKT++I+A AR++Y K ++ MVL
Sbjct: 21 ESLDDVYGQTEVITTIRKFLETGKLPHLLFYGPPGTGKTSSIIALAREIYGK-NYSNMVL 79
Query: 342 ELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
ELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNALRRIIE++T N
Sbjct: 80 ELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRIIERYTKN 139
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RFCI+ NY K+ PA+ SRCTRFRF PL I R+
Sbjct: 140 TRFCILANYAHKLTPALLSRCTRFRFQPLPREAIQRRI 177
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 116/245 (47%), Gaps = 65/245 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTI-EIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
VEKYRP +LD++ ++I+TI + E+ K+ + + GT + + AL
Sbjct: 15 VEKYRPESLDDVYGQTEVITTIRKFLETG------KLPHLLFYGPPGTGKTSSIIALARE 68
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
VLELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNA
Sbjct: 69 IYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNA 128
Query: 222 LRR-----------------------------------------------------KLPV 228
LRR +L +
Sbjct: 129 LRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPREAIQRRISNVLVREQLQM 188
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHAD----EVNEDTVYNSVGYPTKTEITNILR 284
T + A++DLS GDMR+VLN+LQ A A D E+ +D +Y+ G P ++ IL
Sbjct: 189 TESAENALLDLSRGDMRRVLNVLQ-ACKAVIDQPNVEITDDLIYDCCGAPNPQDLETILD 247
Query: 285 WLLNE 289
+L E
Sbjct: 248 SILKE 252
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 108/197 (54%), Gaps = 33/197 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T N RFCI+ NY K+TPA+ SRCTRFRF PL I R+ V+ +E++ +T
Sbjct: 133 IERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPREAIQRRISNVLVREQLQMTESA 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD----EVNEDTIF------------TLLVS--- 101
+ A++DLS GDMR+VLN+LQ A A D E+ +D I+ T+L S
Sbjct: 193 ENALLDLSRGDMRRVLNVLQ-ACKAVIDQPNVEITDDLIYDCCGAPNPQDLETILDSILK 251
Query: 102 --------RVEKYRPSTLDELVSH-QDIISTIEI----PESMLVDLVLKMSDIEYRLAAG 148
++K R S L+ + I+S ++ ES + L+ + DIEY ++ G
Sbjct: 252 EDWTTAHYTLQKVRTSKGLALIDLIEGIVSILQGYQLENESTRISLLTGLGDIEYAISRG 311
Query: 149 TSEKIQLSALIAAFNSA 165
SEKIQ SA+I S+
Sbjct: 312 GSEKIQTSAVIGVVKSS 328
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIP-ESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
+ +Q+++ KGLAL D++ I ++ ++ ES + L+ + DIEY ++ G SEKIQ
Sbjct: 258 HYTLQKVRTSKGLALIDLIEGIVSILQGYQLENESTRISLLTGLGDIEYAISRGGSEKIQ 317
Query: 512 LSALIAAFNSA 522
SA+I S+
Sbjct: 318 TSAVIGVVKSS 328
>gi|354547265|emb|CCE43999.1| hypothetical protein CPAR2_502240 [Candida parapsilosis]
Length = 337
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 95/153 (62%), Positives = 118/153 (77%), Gaps = 5/153 (3%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RF++ +LPHLLFYGPPGTGKT+TI+A AR++Y + MVLELNASDDRGI
Sbjct: 28 DIVSTIRRFVETGKLPHLLFYGPPGTGKTSTIVALAREIYG-PNYKNMVLELNASDDRGI 86
Query: 352 GIVRDQIFQFASTKTMHKSS----YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII 407
+VR+QI FAST+ + SS +KLIILDEADAMT+ AQN+LRRIIEK+T N RFCI+
Sbjct: 87 DVVRNQIKSFASTRQIFTSSSSPQFKLIILDEADAMTSVAQNSLRRIIEKYTKNCRFCIL 146
Query: 408 CNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
NY K+ PA+ SRCTRFRF P+D + I SR+D
Sbjct: 147 ANYSHKLNPALISRCTRFRFHPIDEAAIRSRID 179
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 107/198 (54%), Gaps = 33/198 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY K+ PA+ SRCTRFRF P+D + I SR+D VI +EKVN+TPD
Sbjct: 134 IEKYTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEAAIRSRIDNVIIKEKVNITPDA 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-DEVNEDTI------------------------ 95
A++ LS GDMR+ LN+LQ+ A D+ N +TI
Sbjct: 194 LNALLQLSQGDMRRSLNVLQACKAACGDDDDNSETIDVEMIYNCVGAPHPQDIETVLDSI 253
Query: 96 ----FTLLVSRVEKYRP----STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAA 147
+T + KY+ + +D + DI++ ++ ++ + +S++EY ++
Sbjct: 254 LKQDWTTAYMTLNKYKIDKGLALIDLITGFIDILNDYKVKPKTRIEYLKGLSEVEYGISK 313
Query: 148 GTSEKIQLSALIAAFNSA 165
G +++IQ SA+I A
Sbjct: 314 GGNDRIQSSAIIGVIKQA 331
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 122/262 (46%), Gaps = 69/262 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP L E+ QDI+STI V+ K+ + + GT + + AL
Sbjct: 12 VEKYRPENLTEVYGQQDIVSTIR----RFVE-TGKLPHLLFYGPPGTGKTSTIVALAREI 66
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----YKLIILDEADAMTNDA 218
K VLELNASDDRGI +VR+QI FAST+ + SS +KLIILDEADAMT+ A
Sbjct: 67 YGPNYKNMVLELNASDDRGIDVVRNQIKSFASTRQIFTSSSSPQFKLIILDEADAMTSVA 126
Query: 219 QNALRR-----------------------------------------------------K 225
QN+LRR K
Sbjct: 127 QNSLRRIIEKYTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEAAIRSRIDNVIIKEK 186
Query: 226 LPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADE------VNEDTVYNSVGYPTKTEI 279
+ +TPD A++ LS GDMR+ LN+LQ+ A D+ ++ + +YN VG P +I
Sbjct: 187 VNITPDALNALLQLSQGDMRRSLNVLQACKAACGDDDDNSETIDVEMIYNCVGAPHPQDI 246
Query: 280 TNILRWLLNESMDLCY-KINRF 300
+L +L + Y +N++
Sbjct: 247 ETVLDSILKQDWTTAYMTLNKY 268
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 43/70 (61%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y+ + + KI+KGLAL D++T +++ ++ ++ + +S++EY ++ G +++IQ
Sbjct: 262 YMTLNKYKIDKGLALIDLITGFIDILNDYKVKPKTRIEYLKGLSEVEYGISKGGNDRIQS 321
Query: 513 SALIAAFNSA 522
SA+I A
Sbjct: 322 SAIIGVIKQA 331
>gi|326475565|gb|EGD99574.1| DNA replication factor C subunit Rfc3 [Trichophyton tonsurans CBS
112818]
gi|326483166|gb|EGE07176.1| DNA replication factor C subunit Rfc3 [Trichophyton equinum CBS
127.97]
Length = 397
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 93/148 (62%), Positives = 109/148 (73%), Gaps = 9/148 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRF+D N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 64 DIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGI 123
Query: 352 GIVRDQIFQFASTKTMHKS---------SYKLIILDEADAMTNDAQNALRRIIEKFTTNV 402
+VR+QI FASTK + + ++KLIILDEADAMT+ AQ ALRRI+EK+T N
Sbjct: 124 DVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANT 183
Query: 403 RFCIICNYLSKIPPAIQSRCTRFRFGPL 430
RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 184 RFCIIANYTHKLSPALLSRCTRFRFSPL 211
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 44/209 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VIE+E+V + PD
Sbjct: 176 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRRLVDTVIEKEEVQIQPDA 235
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA----------------HADEVNEDTIFTLLVSRVE 104
+++ LS GDMR+ LN+LQ+ + + + E+TI+T + +
Sbjct: 236 VDSLVTLSKGDMRRALNVLQACHASSMPLPSKKGDGNEQQQERETITEETIYTCIAAPHP 295
Query: 105 KYRPSTLDELVSHQDIIS----------------------------TIEIPESMLVDLVL 136
L+ L+S D+ S ++E+P + V +
Sbjct: 296 ADIKIILETLLSTSDVTSCLNTVQTLKANKGLALADIISALSTELQSLEVPAQVRVSWIE 355
Query: 137 KMSDIEYRLAAGTSEKIQLSALIAAFNSA 165
++D+E+RL+ G SE IQ +I S
Sbjct: 356 GLADVEWRLSGGGSEVIQTGGMIGVIRSG 384
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 120/270 (44%), Gaps = 90/270 (33%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
VEKYRP TLD++ HQDII+TI + VD + + + L G + S ++A
Sbjct: 48 VEKYRPDTLDDVSGHQDIIATI----NRFVD----SNRLPHLLLYGPPGTGKTSTILALA 99
Query: 161 --AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS---------SYKLIILD 209
+ S + VLELNASDDRGI +VR+QI FASTK + + ++KLIILD
Sbjct: 100 RRIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILD 159
Query: 210 EADAMTNDAQNALRR--------------------------------------------- 224
EADAMT+ AQ ALRR
Sbjct: 160 EADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRRL 219
Query: 225 --------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATA----------------HAD 260
++ + PD +++ LS GDMR+ LN+LQ+ + +
Sbjct: 220 VDTVIEKEEVQIQPDAVDSLVTLSKGDMRRALNVLQACHASSMPLPSKKGDGNEQQQERE 279
Query: 261 EVNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ E+T+Y + P +I IL LL+ S
Sbjct: 280 TITEETIYTCIAAPHPADIKIILETLLSTS 309
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+Q +K KGLAL DI++ +S + LE+P + V + ++D+E+RL+ G SE IQ +
Sbjct: 318 VQTLKANKGLALADIISALSTELQSLEVPAQVRVSWIEGLADVEWRLSGGGSEVIQTGGM 377
Query: 516 IAAFNSA 522
I S
Sbjct: 378 IGVIRSG 384
>gi|327301329|ref|XP_003235357.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
gi|326462709|gb|EGD88162.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
Length = 397
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 93/148 (62%), Positives = 109/148 (73%), Gaps = 9/148 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRF+D N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 64 DIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGI 123
Query: 352 GIVRDQIFQFASTKTMHKS---------SYKLIILDEADAMTNDAQNALRRIIEKFTTNV 402
+VR+QI FASTK + + ++KLIILDEADAMT+ AQ ALRRI+EK+T N
Sbjct: 124 DVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANT 183
Query: 403 RFCIICNYLSKIPPAIQSRCTRFRFGPL 430
RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 184 RFCIIANYTHKLSPALLSRCTRFRFSPL 211
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 104/209 (49%), Gaps = 44/209 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VIE+E+V + PD
Sbjct: 176 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRRLVDTVIEKEEVQIQPDA 235
Query: 61 KKAIIDLSDGDMRKVLNILQS---------AATAHADE-------VNEDTIFTLLVSRVE 104
+++ LS GDMR+ LN+LQ+ + A+E + E+TI+T + +
Sbjct: 236 IDSLVKLSKGDMRRALNVLQACHASSMPLPSKKGDANEQQRERETITEETIYTCIAAPHP 295
Query: 105 KYRPSTLDELVSHQDIIS----------------------------TIEIPESMLVDLVL 136
L+ L+S D+ S ++E+P + V +
Sbjct: 296 ADIKIILETLLSTSDVTSCLNTVQTLKANKGLALADIISALSTELQSLEVPAQVRVSWIE 355
Query: 137 KMSDIEYRLAAGTSEKIQLSALIAAFNSA 165
++D+E+RL+ G +E IQ +I S
Sbjct: 356 GLADVEWRLSGGGNEVIQTGGMIGVIRSG 384
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 121/269 (44%), Gaps = 88/269 (32%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD++ HQDII+TI + + L L+L GT + + AL
Sbjct: 48 VEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYG-------PPGTGKTSTILALAR 100
Query: 161 A-FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS---------SYKLIILDE 210
+ S + VLELNASDDRGI +VR+QI FASTK + + ++KLIILDE
Sbjct: 101 RIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDE 160
Query: 211 ADAMTNDAQNALRR---------------------------------------------- 224
ADAMT+ AQ ALRR
Sbjct: 161 ADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRRLV 220
Query: 225 -------KLPVTPDGKKAIIDLSDGDMRKVLNILQS---------AATAHADE------- 261
++ + PD +++ LS GDMR+ LN+LQ+ + A+E
Sbjct: 221 DTVIEKEEVQIQPDAIDSLVKLSKGDMRRALNVLQACHASSMPLPSKKGDANEQQRERET 280
Query: 262 VNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ E+T+Y + P +I IL LL+ S
Sbjct: 281 ITEETIYTCIAAPHPADIKIILETLLSTS 309
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+Q +K KGLAL DI++ +S + LE+P + V + ++D+E+RL+ G +E IQ +
Sbjct: 318 VQTLKANKGLALADIISALSTELQSLEVPAQVRVSWIEGLADVEWRLSGGGNEVIQTGGM 377
Query: 516 IAAFNSA 522
I S
Sbjct: 378 IGVIRSG 384
>gi|302916499|ref|XP_003052060.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732999|gb|EEU46347.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 389
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 109/148 (73%), Gaps = 9/148 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+TILA AR++Y A MVLELNASDDRGI
Sbjct: 62 DILATINKFVDTNRLPHLLLYGPPGTGKTSTILALARRIYGAANMRQMVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTKTMHK---------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNV 402
+VR+QI FASTK + + +KLI+LDEADAMT+ AQ ALRRI+EK+T N
Sbjct: 122 DVVREQIKTFASTKQIFSLGGASARAGAGFKLIVLDEADAMTSTAQMALRRIMEKYTVNT 181
Query: 403 RFCIICNYLSKIPPAIQSRCTRFRFGPL 430
RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 182 RFCIIANYAHKLSPALLSRCTRFRFSPL 209
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 45/210 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL + I +D V+E+E V + +
Sbjct: 174 MEKYTVNTRFCIIANYAHKLSPALLSRCTRFRFSPLKEADIRVLVDKVVEEEHVKIGGEA 233
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIFTLLVSRV 103
A++ LS GDMR+ LN+LQ+ + D + +TI+ + +
Sbjct: 234 VDALVKLSKGDMRRALNVLQACHASSTPLRPKDAPKIPDSEIKRDNITTETIYNCIAAPP 293
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLK-------------------------- 137
L L++ D+ S + S+ V L L
Sbjct: 294 PDAIKEILSTLLNTSDVTSCLTTINSLKVSLGLALADIITALSEELTKLEVSPEVMITWL 353
Query: 138 --MSDIEYRLAAGTSEKIQLSALIAAFNSA 165
++DIE+R+A G+SE IQ A++ S
Sbjct: 354 DGLADIEHRVAGGSSESIQTGAVVGVVRSG 383
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 81/135 (60%), Gaps = 21/135 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
VEKYRP+TL+++ H DI++TI + VD + + + L G + S ++A
Sbjct: 46 VEKYRPNTLEDVSGHHDILATI----NKFVD----TNRLPHLLLYGPPGTGKTSTILALA 97
Query: 161 --AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK---------SSYKLIILD 209
+ +A + VLELNASDDRGI +VR+QI FASTK + + +KLI+LD
Sbjct: 98 RRIYGAANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGGASARAGAGFKLIVLD 157
Query: 210 EADAMTNDAQNALRR 224
EADAMT+ AQ ALRR
Sbjct: 158 EADAMTSTAQMALRR 172
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K+ GLAL DI+T +S + +LE+ +++ + ++DIE+R+A G+SE IQ A+
Sbjct: 317 INSLKVSLGLALADIITALSEELTKLEVSPEVMITWLDGLADIEHRVAGGSSESIQTGAV 376
Query: 516 IAAFNSA 522
+ S
Sbjct: 377 VGVVRSG 383
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 17/73 (23%)
Query: 235 AIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTVYNSVGYPTKT 277
A++ LS GDMR+ LN+LQ+ + D + +T+YN + P
Sbjct: 236 ALVKLSKGDMRRALNVLQACHASSTPLRPKDAPKIPDSEIKRDNITTETIYNCIAAPPPD 295
Query: 278 EITNILRWLLNES 290
I IL LLN S
Sbjct: 296 AIKEILSTLLNTS 308
>gi|242770327|ref|XP_002341956.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
stipitatus ATCC 10500]
gi|218725152|gb|EED24569.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
stipitatus ATCC 10500]
Length = 399
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 97/160 (60%), Positives = 112/160 (70%), Gaps = 11/160 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRFID + LPHLL YGPPGTGKTTTILA AR++Y MVLELNASDDRGI
Sbjct: 64 DILATINRFIDSHRLPHLLLYGPPGTGKTTTILALARRIYGIKNMRQMVLELNASDDRGI 123
Query: 352 GIVRDQIFQFASTKTMHK-----------SSYKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VR+QI FASTK + ++KLIILDEADAMT AQ ALRRI+EK+T
Sbjct: 124 DVVREQIKTFASTKQIFSVAAPAAKENSLGAFKLIILDEADAMTATAQMALRRIMEKYTA 183
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
N RFCII NY K+ PA+ SRCTRFRF PL + I S +D
Sbjct: 184 NTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADIRSLVD 223
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 52/213 (24%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL + I S +D VIE E V + P+
Sbjct: 178 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADIRSLVDKVIEAENVRIQPEA 237
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------AHADE-------VNEDTIFTLLVSRVE 104
++++ LS GDMR+ LN+LQ+ A D+ + + TI+ + +
Sbjct: 238 TESLVRLSKGDMRRALNVLQACHASSIPLPMRNAPKDQPSPEHELITDATIYNCIAA--- 294
Query: 105 KYRPSTLDE----LVSHQDIIS----------------------------TIEIPESMLV 132
PS + E L+S D+IS T+E+P +
Sbjct: 295 -PHPSDIREIMTTLLSTSDVISCLNTINTLKTSKGLALADILSALGEQLQTLEVPAQTRI 353
Query: 133 DLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 165
+ ++++E+RL+ G SE +Q L+ +
Sbjct: 354 SWLEGLAEVEWRLSGGGSEMVQTGGLVGVIRNG 386
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 119/271 (43%), Gaps = 90/271 (33%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP++LDE+ HQDI++TI I L L+L GT + + AL
Sbjct: 48 VEKYRPNSLDEVQGHQDILATINRFIDSHRLPHLLLYG-------PPGTGKTTTILALAR 100
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK-----------SSYKLIIL 208
++ + VLELNASDDRGI +VR+QI FASTK + ++KLIIL
Sbjct: 101 RIYGIKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSVAAPAAKENSLGAFKLIIL 160
Query: 209 DEADAMTNDAQNALRRKL---------------------------------PVTPDGKKA 235
DEADAMT AQ ALRR + P+ ++
Sbjct: 161 DEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADIRS 220
Query: 236 IID--------------------LSDGDMRKVLNILQSAAT---------AHADE----- 261
++D LS GDMR+ LN+LQ+ A D+
Sbjct: 221 LVDKVIEAENVRIQPEATESLVRLSKGDMRRALNVLQACHASSIPLPMRNAPKDQPSPEH 280
Query: 262 --VNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ + T+YN + P ++I I+ LL+ S
Sbjct: 281 ELITDATIYNCIAAPHPSDIREIMTTLLSTS 311
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488
P D IM+ L +S ++I I +K KGLAL DIL+ + + LE+P
Sbjct: 297 PSDIREIMTTL----LSTSDVISCLNTINTLKTSKGLALADILSALGEQLQTLEVPAQTR 352
Query: 489 VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
+ + ++++E+RL+ G SE +Q L+ +
Sbjct: 353 ISWLEGLAEVEWRLSGGGSEMVQTGGLVGVIRNG 386
>gi|358377812|gb|EHK15495.1| hypothetical protein TRIVIDRAFT_38974 [Trichoderma virens Gv29-8]
Length = 391
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 109/150 (72%), Gaps = 11/150 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F++ N LPHLL YGPPGTGKT+TILA AR++Y A MVLELNASDDRGI
Sbjct: 62 DILATINKFVESNRLPHLLLYGPPGTGKTSTILALARRIYGTANMRQMVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTKTM-----------HKSSYKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VR+QI FASTK + + +KLIILDEADAMTN AQ ALRRI+EK+T
Sbjct: 122 DVVREQIKTFASTKQIFSMGSSAAKSSSIAGFKLIILDEADAMTNTAQMALRRIMEKYTA 181
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 182 NTRFCIIANYAHKLSPALLSRCTRFRFSPL 211
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 81/137 (59%), Gaps = 23/137 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
VEKYRP TLD++ HQDI++TI + ++ + + + L G + S ++A
Sbjct: 46 VEKYRPVTLDDVSGHQDILATI--------NKFVESNRLPHLLLYGPPGTGKTSTILALA 97
Query: 161 --AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTM-----------HKSSYKLII 207
+ +A + VLELNASDDRGI +VR+QI FASTK + + +KLII
Sbjct: 98 RRIYGTANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMGSSAAKSSSIAGFKLII 157
Query: 208 LDEADAMTNDAQNALRR 224
LDEADAMTN AQ ALRR
Sbjct: 158 LDEADAMTNTAQMALRR 174
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 45/199 (22%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I ++ V+E+E V + +
Sbjct: 176 MEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLKEGDIRVLVEKVVEEENVKIQGEA 235
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA------------DEVNEDTIFT-LLVSRVEKYR 107
A++ LS GDMR+ LN+LQ+ + E+ +TI T + + + +
Sbjct: 236 VDALVKLSKGDMRRALNVLQACHASSTPLRLKNEPKPPESEIQRETITTETIYNCIAAPQ 295
Query: 108 PSTLDE----LVSHQDIIST----------------------------IEIPESMLVDLV 135
P + E L+S D+ S +E+ +++ +
Sbjct: 296 PDAIKEIMETLLSTPDVTSCLNTINALKTTQGLALADIITALMEQLTKLEVSAEVMITWL 355
Query: 136 LKMSDIEYRLAAGTSEKIQ 154
+++IE+R+A G SE +Q
Sbjct: 356 EGLAEIEHRVAGGGSEMVQ 374
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
I +K +GLAL DI+T + + +LE+ +++ + +++IE+R+A G SE +Q
Sbjct: 319 INALKTTQGLALADIITALMEQLTKLEVSAEVMITWLEGLAEIEHRVAGGGSEMVQ 374
>gi|340056431|emb|CCC50763.1| putative replication factor C, subunit 3 [Trypanosoma vivax Y486]
Length = 374
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 111/150 (74%), Gaps = 7/150 (4%)
Query: 299 RFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI 358
R ID +PH LFYGPPGTGKTTT+ ACA L+ K + A VLE+NASDDRGI +VR Q+
Sbjct: 64 RLIDSGSMPHFLFYGPPGTGKTTTVKACAHYLFGKERVRANVLEMNASDDRGIDVVRQQV 123
Query: 359 FQFASTKTMH-------KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+FAST ++ SS+KL+ILDEAD M+ DAQ ALRRIIEK+T NVRFCIICN +
Sbjct: 124 REFASTSSIFCTNSSNPVSSFKLVILDEADQMSGDAQAALRRIIEKYTKNVRFCIICNRI 183
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+KI PA+QSRCTRFRF P+ ++ RL +
Sbjct: 184 NKIIPALQSRCTRFRFAPVKKGAMLPRLKF 213
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 111/196 (56%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICN ++KI PA+QSRCTRFRF P+ ++ RL +V+++E V T +G
Sbjct: 167 IEKYTKNVRFCIICNRINKIIPALQSRCTRFRFAPVKKGAMLPRLKFVVQEEGVRFTEEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRV----------------- 103
A L +GDMR+ LNI+QS+A + A EV E++++ +
Sbjct: 227 LAAAFRLCNGDMRRCLNIMQSSAMS-AGEVTEESVYRTTGNPTPAEVRGIVEDMLAHDYA 285
Query: 104 ---EKYRPSTLDELVSHQD-------IISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
EK + + +++ VS D I+ +++P L+ K++D+EY A+GT E I
Sbjct: 286 LSWEKMQQAVIEKGVSATDLVREVHHIVMAMDLPVDCKCFLLTKLADVEYYAASGTRESI 345
Query: 154 QLSALIAAFNSARDKL 169
+ ++ AF ++ L
Sbjct: 346 NIGGVLGAFQLVKEAL 361
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 127/266 (47%), Gaps = 67/266 (25%)
Query: 92 EDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE 151
E T T + VEKYRPSTLDE+V+H++I+ST L+D M + GT +
Sbjct: 30 EHTSRTGSLPWVEKYRPSTLDEVVAHEEILSTTR----RLID-SGSMPHFLFYGPPGTGK 84
Query: 152 KIQLSALIAA-FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH-------KSSY 203
+ A F R + VLE+NASDDRGI +VR Q+ +FAST ++ SS+
Sbjct: 85 TTTVKACAHYLFGKERVRANVLEMNASDDRGIDVVRQQVREFASTSSIFCTNSSNPVSSF 144
Query: 204 KLIILDEADAMTNDAQNALRRKL---------------------------------PV-- 228
KL+ILDEAD M+ DAQ ALRR + PV
Sbjct: 145 KLVILDEADQMSGDAQAALRRIIEKYTKNVRFCIICNRINKIIPALQSRCTRFRFAPVKK 204
Query: 229 ------------------TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNS 270
T +G A L +GDMR+ LNI+QS+A + A EV E++VY +
Sbjct: 205 GAMLPRLKFVVQEEGVRFTEEGLAAAFRLCNGDMRRCLNIMQSSAMS-AGEVTEESVYRT 263
Query: 271 VGYPTKTEITNILRWLLNESMDLCYK 296
G PT E+ I+ +L L ++
Sbjct: 264 TGNPTPAEVRGIVEDMLAHDYALSWE 289
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 46/74 (62%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
+ K+Q+ IEKG++ TD++ E+ +V +++P L+ K++D+EY A+GT E I +
Sbjct: 288 WEKMQQAVIEKGVSATDLVREVHHIVMAMDLPVDCKCFLLTKLADVEYYAASGTRESINI 347
Query: 513 SALIAAFNSARDKL 526
++ AF ++ L
Sbjct: 348 GGVLGAFQLVKEAL 361
>gi|212541869|ref|XP_002151089.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
marneffei ATCC 18224]
gi|210065996|gb|EEA20089.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
marneffei ATCC 18224]
Length = 397
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 97/159 (61%), Positives = 111/159 (69%), Gaps = 10/159 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRFID + LPHLL YGPPGTGKTTTILA AR++Y MVLELNASDDRGI
Sbjct: 63 DILATINRFIDSHRLPHLLLYGPPGTGKTTTILALARRIYGSKNMRQMVLELNASDDRGI 122
Query: 352 GIVRDQIFQFASTKTMHK----------SSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+VR+QI FASTK + ++KLIILDEADAMT AQ ALRRI+EK+T N
Sbjct: 123 DVVREQIKTFASTKQIFSVAAPAKENSLGAFKLIILDEADAMTATAQMALRRIMEKYTAN 182
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
RFCII NY K+ PA+ SRCTRFRF PL I S +D
Sbjct: 183 ARFCIIANYTHKLSPALLSRCTRFRFSPLKEVDIRSLVD 221
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 60/232 (25%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I S +D VIE E V + P
Sbjct: 176 MEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEVDIRSLVDKVIEAENVRIQPQA 235
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA----------------HADEVNEDTIFTLLVSRVE 104
++++ LS GDMR+ LN+LQ+ + + + +DTI+ + +
Sbjct: 236 IESLVRLSKGDMRRALNVLQACHASSIPLPMRNAPKEQPPPEHELITDDTIYNCIAA--- 292
Query: 105 KYRPSTLDE----LVSHQDIIS----------------------------TIEIPESMLV 132
PS + E L+S D+ S T+E+P +
Sbjct: 293 -PHPSDIREIMTTLLSTSDVTSCLNTINTLKMSKGLALADILSALGEQLQTLEVPAQTRI 351
Query: 133 DLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGI 184
+ ++++E+RL+ G SE +Q L+ R+ E++ D+G+ +
Sbjct: 352 SWLEGLAEVEWRLSGGGSEMVQTGGLVGVI---RNGCELM-----GDKGVAM 395
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 78/135 (57%), Gaps = 20/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS+LDE+ HQDI++TI I L L+L GT + + AL
Sbjct: 47 VEKYRPSSLDEVQGHQDILATINRFIDSHRLPHLLLYGP-------PGTGKTTTILALAR 99
Query: 161 A-FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK----------SSYKLIILD 209
+ S + VLELNASDDRGI +VR+QI FASTK + ++KLIILD
Sbjct: 100 RIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSVAAPAKENSLGAFKLIILD 159
Query: 210 EADAMTNDAQNALRR 224
EADAMT AQ ALRR
Sbjct: 160 EADAMTATAQMALRR 174
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K+ KGLAL DIL+ + + LE+P + + ++++E+RL+ G SE +Q L
Sbjct: 318 INTLKMSKGLALADILSALGEQLQTLEVPAQTRISWLEGLAEVEWRLSGGGSEMVQTGGL 377
Query: 516 IAAFNSA 522
+ +
Sbjct: 378 VGVIRNG 384
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 16/79 (20%)
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATA----------------HADEVNEDTVYNSV 271
+ P ++++ LS GDMR+ LN+LQ+ + + + +DT+YN +
Sbjct: 231 IQPQAIESLVRLSKGDMRRALNVLQACHASSIPLPMRNAPKEQPPPEHELITDDTIYNCI 290
Query: 272 GYPTKTEITNILRWLLNES 290
P ++I I+ LL+ S
Sbjct: 291 AAPHPSDIREIMTTLLSTS 309
>gi|342888810|gb|EGU88029.1| hypothetical protein FOXB_01512 [Fusarium oxysporum Fo5176]
Length = 1431
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 94/151 (62%), Positives = 111/151 (73%), Gaps = 12/151 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+FID+N LPHLL YGPPGTGKT+TILA AR++Y A MVLELNASDDRGI
Sbjct: 639 DILATINKFIDQNRLPHLLLYGPPGTGKTSTILALARRIYGAANMRQMVLELNASDDRGI 698
Query: 352 GIVRDQIFQFASTKTMHK------------SSYKLIILDEADAMTNDAQNALRRIIEKFT 399
+VR+QI FASTK + + +KLI+LDEADAMT+ AQ ALRRI+EK+T
Sbjct: 699 DVVREQIKTFASTKQIFSMGGASARSGNSMAGFKLIVLDEADAMTSTAQMALRRIMEKYT 758
Query: 400 TNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
TN RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 759 TNTRFCIIANYSHKLSPALLSRCTRFRFSPL 789
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 95/179 (53%), Gaps = 16/179 (8%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+TTN RFCII NY K++PA+ SRCTRFRF PL I +D V+E+E V + +
Sbjct: 754 MEKYTTNTRFCIIANYSHKLSPALLSRCTRFRFSPLKEGDIRVLVDKVVEEEHVRIGGEA 813
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDI 120
A++ LS GDMR+ LN+LQ A A + + + S +E+ E ++ + I
Sbjct: 814 VDALVKLSKGDMRRALNVLQ-ACHASSTPLRAKDAPKVPDSEIER-------ENITTETI 865
Query: 121 ISTIEIPE----SMLVDLVLKMSDIEYRL----AAGTSEKIQLSALIAAFNSARDKLEV 171
+ I P +V +LK SD+ L A S + L+ +I A + KLEV
Sbjct: 866 YNCIAAPPPDAIKEIVSTLLKTSDVTSCLNTINALKVSRGLALADIITALSEELAKLEV 924
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 119/274 (43%), Gaps = 92/274 (33%)
Query: 102 RVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
RVEKYRP+TLD++ HQDI++TI I ++ L L+L GT + + AL
Sbjct: 622 RVEKYRPNTLDDVSGHQDILATINKFIDQNRLPHLLLYG-------PPGTGKTSTILALA 674
Query: 160 AA-FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK------------SSYKLI 206
+ +A + VLELNASDDRGI +VR+QI FASTK + + +KLI
Sbjct: 675 RRIYGAANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMGGASARSGNSMAGFKLI 734
Query: 207 ILDEADAMTNDAQNALRRKL---------------------------------PVTPDGK 233
+LDEADAMT+ AQ ALRR + P+
Sbjct: 735 VLDEADAMTSTAQMALRRIMEKYTTNTRFCIIANYSHKLSPALLSRCTRFRFSPLKEGDI 794
Query: 234 KAIID--------------------LSDGDMRKVLNILQSAATAHA-------------- 259
+ ++D LS GDMR+ LN+LQ+ +
Sbjct: 795 RVLVDKVVEEEHVRIGGEAVDALVKLSKGDMRRALNVLQACHASSTPLRAKDAPKVPDSE 854
Query: 260 ---DEVNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ + +T+YN + P I I+ LL S
Sbjct: 855 IERENITTETIYNCIAAPPPDAIKEIVSTLLKTS 888
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEK 509
I +K+ +GLAL DI+T +S + +LE+ +++ + +++IE+R+A G K
Sbjct: 897 INALKVSRGLALADIITALSEELAKLEVGPEVMITWLDGLANIEHRVAGGGRPK 950
>gi|226290876|gb|EEH46304.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb18]
Length = 395
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 95/150 (63%), Positives = 107/150 (71%), Gaps = 11/150 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRFID N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 64 DIIGTINRFIDSNRLPHLLLYGPPGTGKTSTILALARRIYGVKNMRQMVLELNASDDRGI 123
Query: 352 GIVRDQIFQFASTKTMHK-----------SSYKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VRDQI FASTK + ++KLIILDEADAMT AQ ALRRI+EK+T
Sbjct: 124 DVVRDQIKTFASTKQIFSMAPVAKSESSLGAFKLIILDEADAMTATAQMALRRIMEKYTA 183
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 184 NARFCIIANYTHKLSPALLSRCTRFRFSPL 213
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 103/202 (50%), Gaps = 44/202 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I + ++ VIE+E+V + P+
Sbjct: 178 MEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRALVNQVIEKEQVRIQPEA 237
Query: 61 KKAIIDLSDGDMRKVLNILQSA----------------ATAHADEVNEDTIFTLLVSRVE 104
++++LS GDMR+ LN+LQ+ +A + V+++TI+T + +
Sbjct: 238 IDSLVELSKGDMRRALNVLQACHASSIPLPMKNAPKDRPSAEHETVSQETIYTCIAAPHP 297
Query: 105 KYRPSTLDELVSHQDIIST----------------------------IEIPESMLVDLVL 136
+ + L++ D+ S IE+P + V +
Sbjct: 298 SDIKTIITALLTTSDVTSCLNTIQTLKSNKGLALVDILTALSAELQRIEVPAAARVVWME 357
Query: 137 KMSDIEYRLAAGTSEKIQLSAL 158
++DIE+RLA+G E +Q L
Sbjct: 358 GLADIEWRLASGGGEMVQTGGL 379
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 118/271 (43%), Gaps = 90/271 (33%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP++LD++ H DII TI I + L L+L GT + + AL
Sbjct: 48 VEKYRPNSLDDVSGHHDIIGTINRFIDSNRLPHLLLYGP-------PGTGKTSTILALAR 100
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK-----------SSYKLIIL 208
++ + VLELNASDDRGI +VRDQI FASTK + ++KLIIL
Sbjct: 101 RIYGVKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPVAKSESSLGAFKLIIL 160
Query: 209 DEADAMTNDAQNAL---------------------------------------------- 222
DEADAMT AQ AL
Sbjct: 161 DEADAMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRA 220
Query: 223 -------RRKLPVTPDGKKAIIDLSDGDMRKVLNILQSA----------------ATAHA 259
+ ++ + P+ ++++LS GDMR+ LN+LQ+ +A
Sbjct: 221 LVNQVIEKEQVRIQPEAIDSLVELSKGDMRRALNVLQACHASSIPLPMKNAPKDRPSAEH 280
Query: 260 DEVNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ V+++T+Y + P ++I I+ LL S
Sbjct: 281 ETVSQETIYTCIAAPHPSDIKTIITALLTTS 311
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
IQ +K KGLAL DILT +S + R+E+P + V + ++DIE+RLA+G E +Q L
Sbjct: 320 IQTLKSNKGLALVDILTALSAELQRIEVPAAARVVWMEGLADIEWRLASGGGEMVQTGGL 379
>gi|440638884|gb|ELR08803.1| replication factor C subunit 3/5 [Geomyces destructans 20631-21]
Length = 393
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/150 (61%), Positives = 109/150 (72%), Gaps = 11/150 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRF++ N LPHLL YGPPGTGKT+T+LA AR++Y MVLELNASDDRGI
Sbjct: 65 DIIATINRFVETNRLPHLLLYGPPGTGKTSTVLALARRIYGVKNMRQMVLELNASDDRGI 124
Query: 352 GIVRDQIFQFASTKTMHKS-----------SYKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VR+QI FAST+ + S +YKLIILDEADAMT+ AQ ALRRI+EK+T
Sbjct: 125 DVVREQIKTFASTRQIFSSAPSEASGKSMATYKLIILDEADAMTSTAQMALRRIMEKYTA 184
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 185 NTRFCIIANYTHKLSPALLSRCTRFRFSPL 214
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 45/206 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VIE+E VN+T +
Sbjct: 179 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKERDIRVLVDKVIEEETVNITREA 238
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIFTLLVSRV 103
+A+ LS GDMR+ LN+LQ+ + +++ TI+ + S
Sbjct: 239 TEALTKLSKGDMRRALNVLQACHASSTPLHIKGQPIPKESEIIRNKITTTTIYECIASPE 298
Query: 104 EKYRPSTLDELVSHQDI----------------------------ISTIEIPESMLVDLV 135
+D L+ D+ ++ +E P ++ +
Sbjct: 299 PADISLIVDTLLKTSDVSSCLSLINTLKANKGLALADIIASIAEELTKLETPAQTMITWM 358
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAA 161
++++EYRL+ G +E +Q A++ A
Sbjct: 359 DGLAEVEYRLSGGGNEVVQTGAVVGA 384
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 80/135 (59%), Gaps = 19/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL+++ HQDII+TI + + L L+L + TS + L+ I
Sbjct: 49 VEKYRPDTLEDVSGHQDIIATINRFVETNRLPHLLLYGPPGTGK----TSTVLALARRIY 104
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS-----------SYKLIILD 209
+ R VLELNASDDRGI +VR+QI FAST+ + S +YKLIILD
Sbjct: 105 GVKNMRQM--VLELNASDDRGIDVVREQIKTFASTRQIFSSAPSEASGKSMATYKLIILD 162
Query: 210 EADAMTNDAQNALRR 224
EADAMT+ AQ ALRR
Sbjct: 163 EADAMTSTAQMALRR 177
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K KGLAL DI+ I+ + +LE P ++ + ++++EYRL+ G +E +Q A+
Sbjct: 322 INTLKANKGLALADIIASIAEELTKLETPAQTMITWMDGLAEVEYRLSGGGNEVVQTGAV 381
Query: 516 IAA 518
+ A
Sbjct: 382 VGA 384
>gi|67902154|ref|XP_681333.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
gi|40740496|gb|EAA59686.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
gi|259480821|tpe|CBF73811.1| TPA: subunit of heteropentameric Replication factor (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 398
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 110/150 (73%), Gaps = 11/150 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRF++ N+LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 64 DILATINRFVEANQLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGI 123
Query: 352 GIVRDQIFQFASTKTMHK-----------SSYKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VR+QI FASTK + +S+KLIILDEADAMT+ AQ ALRRI+EK+T
Sbjct: 124 DVVREQIKTFASTKQIFSMAPSATGKSSLASFKLIILDEADAMTSTAQMALRRIMEKYTA 183
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 184 NTRFCIIANYTHKLSPALLSRCTRFRFSPL 213
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 108/220 (49%), Gaps = 47/220 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VIE+E V + P+
Sbjct: 178 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRVLIDQVIEKEDVRIQPEA 237
Query: 61 KKAIIDLSDGDMRKVLNILQSA----------------ATAHADEVNEDTIF-------- 96
+++ LS GDMR+ LN+LQ+ A + + +TI+
Sbjct: 238 VDSLVTLSRGDMRRALNVLQACHASSKPLPIKNAPQDQAVPEPETITNETIYDCIAAPHP 297
Query: 97 --------TLLVSRVEKYRPSTLDEL-----VSHQDIISTI-------EIPESMLVDLVL 136
TLL + +TL+ L ++ DI+S + E+P + +
Sbjct: 298 ADIQQIVTTLLATSDVTSCLNTLNTLKINKGLALADILSALGEQLYRLEVPAQTRITWLE 357
Query: 137 KMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNA 176
+++IE+RL+AG SE +Q L+ R+ E++ N
Sbjct: 358 GLAEIEWRLSAGGSETVQTGGLVGVI---RNGCELMGDNG 394
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 119/272 (43%), Gaps = 92/272 (33%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
VEKYRP+TLD++ H+DI++TI + ++ + + + L G + S ++A
Sbjct: 48 VEKYRPNTLDDVSGHKDILATI--------NRFVEANQLPHLLLYGPPGTGKTSTILALA 99
Query: 161 --AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-----------SSYKLII 207
+ S + VLELNASDDRGI +VR+QI FASTK + +S+KLII
Sbjct: 100 RRIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSATGKSSLASFKLII 159
Query: 208 LDEADAMTNDAQNALRRKL---------------------------------PVTPDGKK 234
LDEADAMT+ AQ ALRR + P+ +
Sbjct: 160 LDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIR 219
Query: 235 AIID--------------------LSDGDMRKVLNILQSA----------------ATAH 258
+ID LS GDMR+ LN+LQ+ A
Sbjct: 220 VLIDQVIEKEDVRIQPEAVDSLVTLSRGDMRRALNVLQACHASSKPLPIKNAPQDQAVPE 279
Query: 259 ADEVNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ + +T+Y+ + P +I I+ LL S
Sbjct: 280 PETITNETIYDCIAAPHPADIQQIVTTLLATS 311
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+ +KI KGLAL DIL+ + ++RLE+P + + +++IE+RL+AG SE +Q L
Sbjct: 320 LNTLKINKGLALADILSALGEQLYRLEVPAQTRITWLEGLAEIEWRLSAGGSETVQTGGL 379
Query: 516 IAAFNSA 522
+ +
Sbjct: 380 VGVIRNG 386
>gi|302413517|ref|XP_003004591.1| replication factor C subunit 3 [Verticillium albo-atrum VaMs.102]
gi|261357167|gb|EEY19595.1| replication factor C subunit 3 [Verticillium albo-atrum VaMs.102]
Length = 391
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 93/151 (61%), Positives = 109/151 (72%), Gaps = 12/151 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D+N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 61 DILATINKFVDKNRLPHLLLYGPPGTGKTSTILALARRIYGPENVRQMVLELNASDDRGI 120
Query: 352 GIVRDQIFQFASTKTMH------------KSSYKLIILDEADAMTNDAQNALRRIIEKFT 399
+VR+QI FASTK + + YKLI+LDEADAMTN AQ ALRRI+EK+T
Sbjct: 121 DVVREQIKTFASTKQIFTSARSGSGSSSGAAGYKLIVLDEADAMTNTAQMALRRIMEKYT 180
Query: 400 TNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 181 ANTRFCIIANYAHKLSPALLSRCTRFRFSPL 211
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 45/202 (22%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D V+++E V + PD
Sbjct: 176 MEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLKEGDIRVLVDRVVDEEGVRIRPDA 235
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIFTLLVSRV 103
A++ L+ GDMR+ LN+LQ+ + D + +TI+ + +
Sbjct: 236 TDALVRLAKGDMRRALNVLQACHASSTPLRGPGEPKVPDAQIVRDLITTETIYQCIAAPP 295
Query: 104 EKYRPSTLDELVSHQDIIST----------------------------IEIPESMLVDLV 135
L L+S D+ S +E+ +++ +
Sbjct: 296 PDAVQEILQALLSTADVTSCLSTINSLKVARGLALADIITSLSEEIYKLEVKPEVMISWL 355
Query: 136 LKMSDIEYRLAAGTSEKIQLSA 157
+++IE+R+A G E +Q A
Sbjct: 356 DGLANIEHRVAGGAGEAVQTGA 377
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 79/136 (58%), Gaps = 20/136 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+TL ++ H DI++TI + ++ L L+L + TS + L+ I
Sbjct: 45 VEKYRPATLADVSGHHDILATINKFVDKNRLPHLLLYGPPGTGK----TSTILALARRIY 100
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH------------KSSYKLIIL 208
+ R VLELNASDDRGI +VR+QI FASTK + + YKLI+L
Sbjct: 101 GPENVRQM--VLELNASDDRGIDVVREQIKTFASTKQIFTSARSGSGSSSGAAGYKLIVL 158
Query: 209 DEADAMTNDAQNALRR 224
DEADAMTN AQ ALRR
Sbjct: 159 DEADAMTNTAQMALRR 174
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 39/59 (66%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
I +K+ +GLAL DI+T +S +++LE+ +++ + +++IE+R+A G E +Q A
Sbjct: 319 INSLKVARGLALADIITSLSEEIYKLEVKPEVMISWLDGLANIEHRVAGGAGEAVQTGA 377
>gi|10798790|dbj|BAB16439.1| replication factor C 36kDa subunit [Oryza sativa Japonica Group]
Length = 367
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/153 (60%), Positives = 117/153 (76%), Gaps = 4/153 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+R +EN LPHLL YGPPGTGKT+TILA ARKLY +Q+ M+LELNASD+RGI
Sbjct: 57 DIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLY-GSQYGNMILELNASDERGI 115
Query: 352 GIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
+VR QI FAS +++ K S K+++LDEADAMT DAQ ALRR+IEK T + RF +IC
Sbjct: 116 DVVRQQIQDFASARSLSFGAKQSVKMVLLDEADAMTKDAQFALRRVIEKHTRSTRFALIC 175
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
N+++KI PA+QSRCTRFRF PLD + + RL +
Sbjct: 176 NHVNKIIPALQSRCTRFRFAPLDGTHVRERLKH 208
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 113/199 (56%), Gaps = 34/199 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK T + RF +ICN+++KI PA+QSRCTRFRF PLD + + RL ++I+ E ++V G
Sbjct: 162 IEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHIIQSEGLDVDDGG 221
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL----LVSRVEKYRPSTLDE--- 113
A++ LS+GDMRK LNILQS A + ++ E+ ++ + +E+ L+E
Sbjct: 222 LTALVRLSNGDMRKALNILQSTHMA-SKQITEEAVYLCTGNPMPKDIEQIAYWLLNESFS 280
Query: 114 -----LVSHQDI---------------------ISTIEIPESMLVDLVLKMSDIEYRLAA 147
++++Q I + I++P + + L+ ++DIEYRL+
Sbjct: 281 TSFKCILNYQSISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRIKLINDLADIEYRLSF 340
Query: 148 GTSEKIQLSALIAAFNSAR 166
++K+QL ALI+ F AR
Sbjct: 341 ACNDKLQLGALISTFTGAR 359
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 118/252 (46%), Gaps = 66/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +L ++ +H+DI+ TI+ E+ L L+L GT + + A+
Sbjct: 41 VEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGP-------PGTGKTSTILAVAR 93
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTND 217
++ +LELNASD+RGI +VR QI FAS +++ K S K+++LDEADAMT D
Sbjct: 94 KLYGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVKMVLLDEADAMTKD 153
Query: 218 AQNALRR----------------------------------------------------- 224
AQ ALRR
Sbjct: 154 AQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHIIQSE 213
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
L V G A++ LS+GDMRK LNILQS A + ++ E+ VY G P +I I
Sbjct: 214 GLDVDDGGLTALVRLSNGDMRKALNILQSTHMA-SKQITEEAVYLCTGNPMPKDIEQIAY 272
Query: 285 WLLNESMDLCYK 296
WLLNES +K
Sbjct: 273 WLLNESFSTSFK 284
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 55/82 (67%)
Query: 447 FNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGT 506
F I+ Y I ++K+ KGLAL DI+ E+++ V ++++P + + L+ ++DIEYRL+
Sbjct: 283 FKCILNYQSISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRIKLINDLADIEYRLSFAC 342
Query: 507 SEKIQLSALIAAFNSARDKLEA 528
++K+QL ALI+ F AR + A
Sbjct: 343 NDKLQLGALISTFTGARTAMVA 364
>gi|255710491|ref|XP_002551529.1| KLTH0A01540p [Lachancea thermotolerans]
gi|238932906|emb|CAR21087.1| KLTH0A01540p [Lachancea thermotolerans CBS 6340]
Length = 328
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/144 (61%), Positives = 111/144 (77%), Gaps = 1/144 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +F+ E LPHLLFYGPPGTGKT+ I+A +R++Y + MVLELNASDDRGI +VR+
Sbjct: 32 VRKFVKEGRLPHLLFYGPPGTGKTSMIVALSREIYG-TNYRNMVLELNASDDRGIDVVRN 90
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI +FAST+ + +KLIILDEADAMTN AQNALRRIIEK+T N RFCI+ NY K+ P
Sbjct: 91 QIKEFASTRQIFSKGFKLIILDEADAMTNAAQNALRRIIEKYTKNTRFCILANYAHKLTP 150
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLD 440
A+ SRCTRFRF PL + I R++
Sbjct: 151 ALLSRCTRFRFQPLPTDAIEKRVN 174
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 110/198 (55%), Gaps = 36/198 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY K+TPA+ SRCTRFRF PL + I R++ V+ E + ++ +
Sbjct: 129 IEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPTDAIEKRVNKVLILENLKLSREA 188
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD---EVNEDTIFTLL------------------ 99
A++ LS GDMR+ LN+LQ++ D EV EDTI+ +
Sbjct: 189 FTALLRLSKGDMRRALNVLQASKATLDDPDAEVTEDTIYECIGAPHPQDIETALESMLKD 248
Query: 100 --------VSRVEKYRPSTLDELVSHQDIISTIE----IPESMLVDLVLKMSDIEYRLAA 147
V+++ + L +LV + I+ T+E PE+ V+L+ K+SDIEY ++
Sbjct: 249 DWSTAFFTVNKIRTLKGLALIDLV--EGIVETLEGYELKPETR-VELLCKLSDIEYAMSK 305
Query: 148 GTSEKIQLSALIAAFNSA 165
G ++K+Q SA+I S+
Sbjct: 306 GGNDKVQSSAVIGVVKSS 323
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 76/124 (61%), Gaps = 9/124 (7%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP TLD++ ++I+ T+ + E L L+ + GT + + AL
Sbjct: 11 IEKYRPQTLDDVYGQREIVGTVRKFVKEGRLPHLL-------FYGPPGTGKTSMIVALSR 63
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ VLELNASDDRGI +VR+QI +FAST+ + +KLIILDEADAMTN AQN
Sbjct: 64 EIYGTNYRNMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTNAAQN 123
Query: 221 ALRR 224
ALRR
Sbjct: 124 ALRR 127
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
+ + +I+ KGLAL D++ I + E+ V+L+ K+SDIEY ++ G ++K+Q
Sbjct: 254 FFTVNKIRTLKGLALIDLVEGIVETLEGYELKPETRVELLCKLSDIEYAMSKGGNDKVQS 313
Query: 513 SALIAAFNSA 522
SA+I S+
Sbjct: 314 SAVIGVVKSS 323
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 190 FQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRKLPVTPDGKKAIIDLSDGDMRKVLN 249
FQ T + K K++IL+ L ++ + A++ LS GDMR+ LN
Sbjct: 161 FQPLPTDAIEKRVNKVLILE---------------NLKLSREAFTALLRLSKGDMRRALN 205
Query: 250 ILQSAATAHAD---EVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCY 295
+LQ++ D EV EDT+Y +G P +I L +L + +
Sbjct: 206 VLQASKATLDDPDAEVTEDTIYECIGAPHPQDIETALESMLKDDWSTAF 254
>gi|378727708|gb|EHY54167.1| replication factor C subunit 3/5 [Exophiala dermatitidis
NIH/UT8656]
Length = 408
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/164 (58%), Positives = 115/164 (70%), Gaps = 14/164 (8%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRFI++N+LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 65 DILATINRFIEQNKLPHLLLYGPPGTGKTSTILALARQIYGPKNMRQMVLELNASDDRGI 124
Query: 352 GIVRDQIFQFASTKTMHKSS--------------YKLIILDEADAMTNDAQNALRRIIEK 397
+VR+QI FASTK + +S +KLIILDEADAMT+ AQ ALRRI+EK
Sbjct: 125 DVVREQIKTFASTKQIFSASTQQGPSGAKFGLGAFKLIILDEADAMTSAAQMALRRIMEK 184
Query: 398 FTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+T N RFCII NY K+ PA+ SRCTRFRF PL I +D+
Sbjct: 185 YTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKKEDIRRLVDH 228
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 105/210 (50%), Gaps = 45/210 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D+VI +EKVN+ PD
Sbjct: 182 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKKEDIRRLVDHVIAEEKVNIAPDA 241
Query: 61 KKAIIDLSDGDMRKVLNILQSA-----------------ATAHADEVNEDTIFTLLVS-R 102
+++++LS GDMR+ LN+LQ+ A + + DTI+ + +
Sbjct: 242 VESLVELSKGDMRRALNVLQACHAGSRPLPIRGQPPVKDADVKYELITNDTIYNCIAAPH 301
Query: 103 VEKYR---------P------STLDELVSHQDI------------ISTIEIPESMLVDLV 135
E R P +T++ L S + + + +E+ + V +
Sbjct: 302 PEDIRLIMTTMLSTPDMTSCMNTINALKSSRGLALADILTALAEELQNLEVSAATRVTWL 361
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSA 165
+++IEYRLA G SE +Q ++ +
Sbjct: 362 QGLAEIEYRLAGGGSESVQTGGMVGVVRTG 391
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 122/273 (44%), Gaps = 94/273 (34%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+TLD++ H+DI++TI I ++ L L+L GT + + AL
Sbjct: 49 VEKYRPNTLDDVSGHKDILATINRFIEQNKLPHLLLYGP-------PGTGKTSTILALAR 101
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSS--------------YKL 205
++ + VLELNASDDRGI +VR+QI FASTK + +S +KL
Sbjct: 102 QIYGPKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSASTQQGPSGAKFGLGAFKL 161
Query: 206 IILDEADAMTNDAQNALRR----------------------------------------- 224
IILDEADAMT+ AQ ALRR
Sbjct: 162 IILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKKED 221
Query: 225 ------------KLPVTPDGKKAIIDLSDGDMRKVLNILQSA-----------------A 255
K+ + PD +++++LS GDMR+ LN+LQ+ A
Sbjct: 222 IRRLVDHVIAEEKVNIAPDAVESLVELSKGDMRRALNVLQACHAGSRPLPIRGQPPVKDA 281
Query: 256 TAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
+ + DT+YN + P +I I+ +L+
Sbjct: 282 DVKYELITNDTIYNCIAAPHPEDIRLIMTTMLS 314
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488
P D LIM+ + +S ++ I +K +GLAL DILT ++ + LE+ +
Sbjct: 302 PEDIRLIMTTM----LSTPDMTSCMNTINALKSSRGLALADILTALAEELQNLEVSAATR 357
Query: 489 VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
V + +++IEYRLA G SE +Q ++ +
Sbjct: 358 VTWLQGLAEIEYRLAGGGSESVQTGGMVGVVRTG 391
>gi|399215831|emb|CCF72519.1| unnamed protein product [Babesia microti strain RI]
Length = 347
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 167/316 (52%), Gaps = 81/316 (25%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I F + ++PHLLF+GPPGTGKT+TILA ++ LY N VLELNASDDRGI
Sbjct: 25 DIINTIKSFTEVGQIPHLLFHGPPGTGKTSTILAISKHLYGNYA-NVYVLELNASDDRGI 83
Query: 352 GIVRDQIFQFAST-----------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VRD+I FA K++ KLIILDEAD MTN +Q ALRRI+E +
Sbjct: 84 NVVRDKIKTFAEALNRFVPSSDNPANQVKTNLKLIILDEADQMTNASQGALRRIMEIYAK 143
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPLD------------------------SSLI- 435
NVRFC+ICNY+ KI IQSRCT FRF PLD S+LI
Sbjct: 144 NVRFCLICNYMHKIISPIQSRCTGFRFSPLDENDLRRRTLEIATNEGITLEENGLSALIE 203
Query: 436 -----------------MSRLDYDD---------------------ISFFNIIIWYIKIQ 457
MS+LD D S FN ++ +
Sbjct: 204 IAQGDMRKVLNTFQIAAMSKLDSQDRNIIDVNDILNASGTPLEDEVKSIFNALVQSTFSE 263
Query: 458 EIKIEK------GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
I+I + G +L D++T + L+ +++ P ++V L+++M+DIE RLA G +E IQ
Sbjct: 264 CIQIIRHVQELKGYSLQDLVTCLYKLIIKIDWPTIVIVQLIIRMADIEERLATGANENIQ 323
Query: 512 LSALIAAFNSARDKLE 527
+ AL++AF AR ++E
Sbjct: 324 ICALVSAFTEARFEIE 339
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 115/209 (55%), Gaps = 32/209 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + NVRFC+ICNY+ KI IQSRCT FRF PLD + + R + E + + +G
Sbjct: 138 MEIYAKNVRFCLICNYMHKIISPIQSRCTGFRFSPLDENDLRRRTLEIATNEGITLEENG 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD-------EVNE-------------DTIFTLLV 100
A+I+++ GDMRKVLN Q AA + D +VN+ +IF LV
Sbjct: 198 LSALIEIAQGDMRKVLNTFQIAAMSKLDSQDRNIIDVNDILNASGTPLEDEVKSIFNALV 257
Query: 101 S-----------RVEKYRPSTLDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAG 148
V++ + +L +LV+ +I I+ P ++V L+++M+DIE RLA G
Sbjct: 258 QSTFSECIQIIRHVQELKGYSLQDLVTCLYKLIIKIDWPTIVIVQLIIRMADIEERLATG 317
Query: 149 TSEKIQLSALIAAFNSARDKLEVLELNAS 177
+E IQ+ AL++AF AR ++E ++ S
Sbjct: 318 ANENIQICALVSAFTEARFEIERIKFEIS 346
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 117/269 (43%), Gaps = 74/269 (27%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP LD ++SH+DII+TI+ V ++ + + GT + + A+
Sbjct: 10 EKYRPPDLDSIISHKDIINTIK-----SFTEVGQIPHLLFHGPPGTGKTSTILAISKHLY 64
Query: 164 SARDKLEVLELNASDDRGIGIVRDQIFQFAST-----------KTMHKSSYKLIILDEAD 212
+ VLELNASDDRGI +VRD+I FA K++ KLIILDEAD
Sbjct: 65 GNYANVYVLELNASDDRGINVVRDKIKTFAEALNRFVPSSDNPANQVKTNLKLIILDEAD 124
Query: 213 AMTNDAQNAL---------------------------------------------RRKLP 227
MTN +Q AL RR L
Sbjct: 125 QMTNASQGALRRIMEIYAKNVRFCLICNYMHKIISPIQSRCTGFRFSPLDENDLRRRTLE 184
Query: 228 VT--------PDGKKAIIDLSDGDMRKVLNILQSAATAHADE-----VNEDTVYNSVGYP 274
+ +G A+I+++ GDMRKVLN Q AA + D ++ + + N+ G P
Sbjct: 185 IATNEGITLEENGLSALIEIAQGDMRKVLNTFQIAAMSKLDSQDRNIIDVNDILNASGTP 244
Query: 275 TKTEITNILRWLLNESMDLCYKINRFIDE 303
+ E+ +I L+ + C +I R + E
Sbjct: 245 LEDEVKSIFNALVQSTFSECIQIIRHVQE 273
>gi|171677049|ref|XP_001903476.1| hypothetical protein [Podospora anserina S mat+]
gi|170936592|emb|CAP61251.1| unnamed protein product [Podospora anserina S mat+]
Length = 389
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 108/149 (72%), Gaps = 10/149 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 62 DILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGAENMRQMVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTKTMHK----------SSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+VR+QI FASTK + + +KLIILDEADAMT+ AQ ALRRI+EK+T N
Sbjct: 122 DVVREQIKTFASTKQIFSLGASTSKTGLAGFKLIILDEADAMTSTAQMALRRIMEKYTVN 181
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 182 TRFCIIANYSHKLSPALLSRCTRFRFSPL 210
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 109/217 (50%), Gaps = 48/217 (22%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VI++E + + P+
Sbjct: 175 MEKYTVNTRFCIIANYSHKLSPALLSRCTRFRFSPLKERDIRVLVDKVIDEEHIKIKPEA 234
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIFTLLVSRV 103
A++ LS GDMR+ LN+LQ+ + + + DTI+ + +
Sbjct: 235 ADALVKLSKGDMRRALNVLQACHASSTPLQPKDTPKIPEDQIVRESITVDTIYMCVAAPP 294
Query: 104 EKYRPSTLDELVSHQDI------ISTIEIPESM-LVDLVLKMSD---------------- 140
++ L+S D+ ++++++ + + L D++ +S+
Sbjct: 295 PDVIKKIMNTLLSTSDVTACLAAVNSVKVTQGLALADIITALSEELVKLEVKPEVMITWL 354
Query: 141 -----IEYRLAAGTSEKIQLSALIAAFNSARDKLEVL 172
+E+R+A G SE IQ A++ A R+ +E++
Sbjct: 355 DLLAQVEHRVAGGASEVIQTGAVVGAV---RNGVELM 388
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 20/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +LD++ HQDI++TI + + L L+L GT + + AL
Sbjct: 46 VEKYRPVSLDDVSGHQDILATINKFVDSNRLPHLLLYGP-------PGTGKTSTILALAR 98
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK----------SSYKLIILD 209
A + + VLELNASDDRGI +VR+QI FASTK + + +KLIILD
Sbjct: 99 RIYGAENMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGASTSKTGLAGFKLIILD 158
Query: 210 EADAMTNDAQNALRR 224
EADAMT+ AQ ALRR
Sbjct: 159 EADAMTSTAQMALRR 173
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEI-PESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
+ +K+ +GLAL DI+T +S + +LE+ PE M+ L L ++ +E+R+A G SE IQ A
Sbjct: 318 VNSVKVTQGLALADIITALSEELVKLEVKPEVMITWLDL-LAQVEHRVAGGASEVIQTGA 376
Query: 515 LIAAFNSA 522
++ A +
Sbjct: 377 VVGAVRNG 384
>gi|325096741|gb|EGC50051.1| activator 1 subunit 3 [Ajellomyces capsulatus H88]
Length = 443
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/211 (50%), Positives = 130/211 (61%), Gaps = 23/211 (10%)
Query: 241 DGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL----------LNES 290
DG+M ++AA +D N + P + E ++L W+ ++
Sbjct: 5 DGEMDVDDPPSKNAAQFSSDNTNGRGKRIAADLPIEAE--DVLPWVEKYRPNTLEDVSGH 62
Query: 291 MDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG 350
D+ INRFID+N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRG
Sbjct: 63 HDIISTINRFIDKNRLPHLLLYGPPGTGKTSTILALARRIYGVKNMRQMVLELNASDDRG 122
Query: 351 IGIVRDQIFQFASTKTMHK-----------SSYKLIILDEADAMTNDAQNALRRIIEKFT 399
I +VRDQI FASTK + ++KLIILDEADAMT AQ ALRRI+EK+T
Sbjct: 123 IDVVRDQIKTFASTKQIFSVAPSTKSESTLGAFKLIILDEADAMTATAQMALRRIMEKYT 182
Query: 400 TNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 183 ANTRFCIIANYTHKLSPALLSRCTRFRFSPL 213
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 52/202 (25%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D V+E+E+V + P+
Sbjct: 178 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEEDIRVLVDQVVEKERVRIQPEA 237
Query: 61 KKAIIDLSDGDMRKVLNILQSA----------------ATAHADEVNEDTIFTLLVSRVE 104
+++ LS GDMR+ LN+LQ+ T+ + + ++TI+ + +
Sbjct: 238 IDSLVQLSKGDMRRALNVLQACHASSIPLPMKNGPKAQPTSEHETITDETIYNCIAA--- 294
Query: 105 KYRPS--------------------TLDELVSHQ-----DIIST-------IEIPESMLV 132
PS T+ L S + DI+++ IE+P + +
Sbjct: 295 -PHPSDIKTIITTLLTTSDVTSCLNTIKTLKSTKGLALADILTSISTELQRIEVPAATRI 353
Query: 133 DLVLKMSDIEYRLAAGTSEKIQ 154
+ ++DIE+RLA G E +Q
Sbjct: 354 VWMEGLADIEWRLAGGGGEMVQ 375
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 115/260 (44%), Gaps = 90/260 (34%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+TL+++ H DIISTI I ++ L L+L GT + + AL
Sbjct: 48 VEKYRPNTLEDVSGHHDIISTINRFIDKNRLPHLLLYG-------PPGTGKTSTILALAR 100
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK-----------SSYKLIIL 208
++ + VLELNASDDRGI +VRDQI FASTK + ++KLIIL
Sbjct: 101 RIYGVKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPSTKSESTLGAFKLIIL 160
Query: 209 DEADAMTNDAQNALRR-------------------------------------------- 224
DEADAMT AQ ALRR
Sbjct: 161 DEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEEDIRV 220
Query: 225 ---------KLPVTPDGKKAIIDLSDGDMRKVLNILQSA----------------ATAHA 259
++ + P+ +++ LS GDMR+ LN+LQ+ T+
Sbjct: 221 LVDQVVEKERVRIQPEAIDSLVQLSKGDMRRALNVLQACHASSIPLPMKNGPKAQPTSEH 280
Query: 260 DEVNEDTVYNSVGYPTKTEI 279
+ + ++T+YN + P ++I
Sbjct: 281 ETITDETIYNCIAAPHPSDI 300
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
I+ +K KGLAL DILT IS + R+E+P + + + ++DIE+RLA G E +Q
Sbjct: 320 IKTLKSTKGLALADILTSISTELQRIEVPAATRIVWMEGLADIEWRLAGGGGEMVQ 375
>gi|346973023|gb|EGY16475.1| replication factor C subunit 3 [Verticillium dahliae VdLs.17]
Length = 393
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 93/153 (60%), Positives = 109/153 (71%), Gaps = 14/153 (9%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D+N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 61 DILATINKFVDKNRLPHLLLYGPPGTGKTSTILALARRIYGPENVRQMVLELNASDDRGI 120
Query: 352 GIVRDQIFQFASTKTMH--------------KSSYKLIILDEADAMTNDAQNALRRIIEK 397
+VR+QI FASTK + + YKLI+LDEADAMTN AQ ALRRI+EK
Sbjct: 121 DVVREQIKTFASTKQIFTSARSGGGGGSSSGAAGYKLIVLDEADAMTNTAQMALRRIMEK 180
Query: 398 FTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
+T N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 181 YTANTRFCIIANYAHKLSPALLSRCTRFRFSPL 213
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 45/210 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL + I +D V++ E V + PD
Sbjct: 178 MEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLREADIRVLVDRVVDDEGVRIRPDA 237
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIFTLLVSRV 103
A++ L+ GDMR+ LN+LQ+ + D + +TI+ + +
Sbjct: 238 TDALVRLAKGDMRRALNVLQACHASSTPLRAPGEPKVPDAQVVRDLITTETIYQCIAAPP 297
Query: 104 EKYRPSTLDELVSHQDIIST----------------------------IEIPESMLVDLV 135
L L+S D+ S +E+ +++ +
Sbjct: 298 PNAVQEILQALLSTADVTSCLSTINSLKVARGLALADIITSLSEEIYKLEVKPEVMISWL 357
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSA 165
++DIE+R+A G E +Q A++ S
Sbjct: 358 DGLADIEHRVAGGAGEAVQTGAVVGVVRSG 387
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 79/138 (57%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+TL ++ H DI++TI + ++ L L+L + TS + L+ I
Sbjct: 45 VEKYRPATLADVSGHHDILATINKFVDKNRLPHLLLYGPPGTGK----TSTILALARRIY 100
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH--------------KSSYKLI 206
+ R VLELNASDDRGI +VR+QI FASTK + + YKLI
Sbjct: 101 GPENVRQM--VLELNASDDRGIDVVREQIKTFASTKQIFTSARSGGGGGSSSGAAGYKLI 158
Query: 207 ILDEADAMTNDAQNALRR 224
+LDEADAMTN AQ ALRR
Sbjct: 159 VLDEADAMTNTAQMALRR 176
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 42/67 (62%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K+ +GLAL DI+T +S +++LE+ +++ + ++DIE+R+A G E +Q A+
Sbjct: 321 INSLKVARGLALADIITSLSEEIYKLEVKPEVMISWLDGLADIEHRVAGGAGEAVQTGAV 380
Query: 516 IAAFNSA 522
+ S
Sbjct: 381 VGVVRSG 387
>gi|367007966|ref|XP_003688712.1| hypothetical protein TPHA_0P01200 [Tetrapisispora phaffii CBS 4417]
gi|357527022|emb|CCE66278.1| hypothetical protein TPHA_0P01200 [Tetrapisispora phaffii CBS 4417]
Length = 335
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/149 (60%), Positives = 115/149 (77%), Gaps = 1/149 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + +F+ E +LPHLLFYGPPGTGKT+TI+A A+++Y K ++ MVLELNASDDRGI
Sbjct: 30 DIVNTVRKFVAEGKLPHLLFYGPPGTGKTSTIIALAKEIYGK-NYSNMVLELNASDDRGI 88
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI FAST+ + +KLIILDEADAMTN AQNALRRIIEK+T N RFCI+ NY
Sbjct: 89 DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRIIEKYTKNTRFCILANYA 148
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
K+ PA+ SRCTRFRF P+ + R++
Sbjct: 149 YKLTPALLSRCTRFRFQPIAIDALERRMN 177
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 116/251 (46%), Gaps = 65/251 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS+LDE+ DI++T+ + E L L+ + GT + + AL
Sbjct: 14 VEKYRPSSLDEVYGQPDIVNTVRKFVAEGKLPHLL-------FYGPPGTGKTSTIIALAK 66
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
VLELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQN
Sbjct: 67 EIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQN 126
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR L
Sbjct: 127 ALRRIIEKYTKNTRFCILANYAYKLTPALLSRCTRFRFQPIAIDALERRMNNVVLQEHLN 186
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATA--HAD-EVNEDTVYNSVGYPTKTEITNILR 284
+ + K A++ +S GDMR+++N+LQ++ ++ AD E+ + +Y G ++ IL+
Sbjct: 187 IGQEAKDALLKVSKGDMRRIMNVLQASKSSVDTADGEITREIIYECCGICRPEDVQKILK 246
Query: 285 WLLNESMDLCY 295
+L + Y
Sbjct: 247 SILEDDFGTAY 257
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 110/196 (56%), Gaps = 31/196 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY K+TPA+ SRCTRFRF P+ + R++ V+ QE +N+ +
Sbjct: 132 IEKYTKNTRFCILANYAYKLTPALLSRCTRFRFQPIAIDALERRMNNVVLQEHLNIGQEA 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA--HAD-EVNEDTIFTLL-VSR---VEKYRPSTLDE 113
K A++ +S GDMR+++N+LQ++ ++ AD E+ + I+ + R V+K S L++
Sbjct: 192 KDALLKVSKGDMRRIMNVLQASKSSVDTADGEITREIIYECCGICRPEDVQKILKSILED 251
Query: 114 ----------LVSHQDIISTIEIPESMLV--------------DLVLKMSDIEYRLAAGT 149
+ +++I+I E ++ + ++ +S+IEY ++ G
Sbjct: 252 DFGTAYLTLKQICQAKGLASIDIIEELVALLECYELKNERTRQETLVCLSEIEYSISKGC 311
Query: 150 SEKIQLSALIAAFNSA 165
+ KI SA+I A +A
Sbjct: 312 NNKIVQSAIIGAIKTA 327
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIP-ESM 487
P D I+ + DD Y+ +++I KGLA DI+ E+ L+ E+ E
Sbjct: 238 PEDVQKILKSILEDDFG-----TAYLTLKQICQAKGLASIDIIEELVALLECYELKNERT 292
Query: 488 LVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
+ ++ +S+IEY ++ G + KI SA+I A +A
Sbjct: 293 RQETLVCLSEIEYSISKGCNNKIVQSAIIGAIKTA 327
>gi|400594648|gb|EJP62486.1| replication factor C subunit 3 [Beauveria bassiana ARSEF 2860]
Length = 376
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 93/155 (60%), Positives = 109/155 (70%), Gaps = 16/155 (10%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+TILA AR++Y A MVLELNASDDRGI
Sbjct: 42 DILATINKFVDANRLPHLLLYGPPGTGKTSTILALARRIYGAAHVRQMVLELNASDDRGI 101
Query: 352 GIVRDQIFQFASTKTMHK----------------SSYKLIILDEADAMTNDAQNALRRII 395
+VR+QI FASTK + + +KLIILDEADAMT+ AQ ALRRI+
Sbjct: 102 DVVREQIKTFASTKQIFGMGAPRSGTTSSSLSPAAGFKLIILDEADAMTSTAQMALRRIM 161
Query: 396 EKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
EK+T N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 162 EKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPL 196
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 45/210 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL + I + V+++E V + +
Sbjct: 161 MEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLKEADIRQLVTRVVDEEGVRIGAEA 220
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIFTLLVSRV 103
A++ LS GDMR+ LN+LQ+ + + + +TI+T + +
Sbjct: 221 VDALVKLSKGDMRRALNVLQACHASSTPLRAPGAPKTPDSEIRRENITTETIYTCIAAPA 280
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESM-------LVDLVLKMSD---------------- 140
+ + L+ D+ S + S+ L D++ ++D
Sbjct: 281 PEAIEQIMTTLLGTSDVTSCLHAINSIKRLQGLALADVITALADELAKLDVSPAVMITWL 340
Query: 141 -----IEYRLAAGTSEKIQLSALIAAFNSA 165
IE+R+A G SE +Q A++ +
Sbjct: 341 DGLAEIEHRVAGGGSEVLQTGAVVGVVRTG 370
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 84/154 (54%), Gaps = 31/154 (20%)
Query: 91 NEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTS 150
N+D +F+ + K + +LD++ HQDI++TI + VD + + + L G
Sbjct: 17 NKDVVFS---ADASKGKRKSLDDVEGHQDILATI----NKFVD----ANRLPHLLLYGPP 65
Query: 151 EKIQLSALIA----AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK------ 200
+ S ++A + +A + VLELNASDDRGI +VR+QI FASTK +
Sbjct: 66 GTGKTSTILALARRIYGAAHVRQMVLELNASDDRGIDVVREQIKTFASTKQIFGMGAPRS 125
Query: 201 ----------SSYKLIILDEADAMTNDAQNALRR 224
+ +KLIILDEADAMT+ AQ ALRR
Sbjct: 126 GTTSSSLSPAAGFKLIILDEADAMTSTAQMALRR 159
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 42/67 (62%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I IK +GLAL D++T ++ + +L++ ++++ + +++IE+R+A G SE +Q A+
Sbjct: 304 INSIKRLQGLALADVITALADELAKLDVSPAVMITWLDGLAEIEHRVAGGGSEVLQTGAV 363
Query: 516 IAAFNSA 522
+ +
Sbjct: 364 VGVVRTG 370
>gi|315049065|ref|XP_003173907.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
118893]
gi|311341874|gb|EFR01077.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
118893]
Length = 397
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 109/148 (73%), Gaps = 9/148 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRF++ N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 64 DIIATINRFVESNRLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGI 123
Query: 352 GIVRDQIFQFASTKTMHKS---------SYKLIILDEADAMTNDAQNALRRIIEKFTTNV 402
+VR+QI FASTK + + ++KLIILDEADAMT+ AQ ALRRI+EK+T N
Sbjct: 124 DVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANT 183
Query: 403 RFCIICNYLSKIPPAIQSRCTRFRFGPL 430
RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 184 RFCIIANYTHKLSPALLSRCTRFRFSPL 211
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 44/209 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VIE+E+V + PD
Sbjct: 176 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIKRLVDTVIEKEQVQIQPDA 235
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA----------------DEVNEDTIFTLLVSRVE 104
+++ LS GDMR+ LN+LQ+ + + + E+TI+T + +
Sbjct: 236 IDSLVKLSKGDMRRALNVLQACHASSMPLPSKKGDTSEQPQDRETITEETIYTCIAAPHP 295
Query: 105 KYRPSTLDELVSHQDIIS----------------------------TIEIPESMLVDLVL 136
L+ L+S D+ S ++E+P + V +
Sbjct: 296 ADIKMILETLLSTSDVTSCLNTVQTLKSNKGLALADIISALSTELQSLEVPAQVRVSWIE 355
Query: 137 KMSDIEYRLAAGTSEKIQLSALIAAFNSA 165
++D+E+RL+ G SE IQ +I S
Sbjct: 356 GLADVEWRLSGGGSESIQTGGMIGVIRSG 384
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 120/270 (44%), Gaps = 90/270 (33%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
VEKYRP TLD++ HQDII+TI + ++ + + + L G + S ++A
Sbjct: 48 VEKYRPDTLDDVSGHQDIIATI--------NRFVESNRLPHLLLYGPPGTGKTSTILALA 99
Query: 161 --AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS---------SYKLIILD 209
+ S + VLELNASDDRGI +VR+QI FASTK + + ++KLIILD
Sbjct: 100 RRIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILD 159
Query: 210 EADAMTNDAQNALRR--------------------------------------------- 224
EADAMT+ AQ ALRR
Sbjct: 160 EADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIKRL 219
Query: 225 --------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHA----------------D 260
++ + PD +++ LS GDMR+ LN+LQ+ + +
Sbjct: 220 VDTVIEKEQVQIQPDAIDSLVKLSKGDMRRALNVLQACHASSMPLPSKKGDTSEQPQDRE 279
Query: 261 EVNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ E+T+Y + P +I IL LL+ S
Sbjct: 280 TITEETIYTCIAAPHPADIKMILETLLSTS 309
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+Q +K KGLAL DI++ +S + LE+P + V + ++D+E+RL+ G SE IQ +
Sbjct: 318 VQTLKSNKGLALADIISALSTELQSLEVPAQVRVSWIEGLADVEWRLSGGGSESIQTGGM 377
Query: 516 IAAFNSA 522
I S
Sbjct: 378 IGVIRSG 384
>gi|296817467|ref|XP_002849070.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
gi|238839523|gb|EEQ29185.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
Length = 397
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 109/148 (73%), Gaps = 9/148 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRF++ N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 64 DIIATINRFVESNRLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGI 123
Query: 352 GIVRDQIFQFASTKTMHKS---------SYKLIILDEADAMTNDAQNALRRIIEKFTTNV 402
+VR+QI FASTK + + ++KLIILDEADAMT+ AQ ALRRI+EK+T N
Sbjct: 124 DVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANT 183
Query: 403 RFCIICNYLSKIPPAIQSRCTRFRFGPL 430
RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 184 RFCIIANYTHKLSPALLSRCTRFRFSPL 211
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 105/209 (50%), Gaps = 44/209 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VI++E+V + PD
Sbjct: 176 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRKLVDTVIDKEQVQIQPDA 235
Query: 61 KKAIIDLSDGDMRKVLNILQS---------AATAHADE-------VNEDTIFTLLVSRVE 104
+++ LS GDMR+ LN+LQ+ + A+E + E+TI+T + +
Sbjct: 236 IDSLVKLSKGDMRRALNVLQACHASSMPLPSKKGEANESPEERELITEETIYTCIAAPHP 295
Query: 105 KYRPSTLDELVSHQDIIS----------------------------TIEIPESMLVDLVL 136
+ L+ L+S D+ S ++E+P + V +
Sbjct: 296 TDIRTILETLLSTSDVTSCLNTVQTLKSNKGLALADIITALSTELQSLEVPPQVRVSWIE 355
Query: 137 KMSDIEYRLAAGTSEKIQLSALIAAFNSA 165
++D+E+RL+ G SE IQ +I S
Sbjct: 356 GLADVEWRLSGGGSEAIQTGGMIGVIRSG 384
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 123/270 (45%), Gaps = 90/270 (33%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
VEKYRP TLD++ HQDII+TI + ++ + + + L G + S ++A
Sbjct: 48 VEKYRPDTLDDVSGHQDIIATI--------NRFVESNRLPHLLLYGPPGTGKTSTILALA 99
Query: 161 --AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS---------SYKLIILD 209
+ S + VLELNASDDRGI +VR+QI FASTK + + ++KLIILD
Sbjct: 100 RRIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILD 159
Query: 210 EADAMTNDAQNALRR--------------------------------------------- 224
EADAMT+ AQ ALRR
Sbjct: 160 EADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRKL 219
Query: 225 --------KLPVTPDGKKAIIDLSDGDMRKVLNILQS---------AATAHADE------ 261
++ + PD +++ LS GDMR+ LN+LQ+ + A+E
Sbjct: 220 VDTVIDKEQVQIQPDAIDSLVKLSKGDMRRALNVLQACHASSMPLPSKKGEANESPEERE 279
Query: 262 -VNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ E+T+Y + P T+I IL LL+ S
Sbjct: 280 LITEETIYTCIAAPHPTDIRTILETLLSTS 309
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+Q +K KGLAL DI+T +S + LE+P + V + ++D+E+RL+ G SE IQ +
Sbjct: 318 VQTLKSNKGLALADIITALSTELQSLEVPPQVRVSWIEGLADVEWRLSGGGSEAIQTGGM 377
Query: 516 IAAFNSA 522
I S
Sbjct: 378 IGVIRSG 384
>gi|448515699|ref|XP_003867395.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380351734|emb|CCG21957.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 333
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/153 (61%), Positives = 117/153 (76%), Gaps = 5/153 (3%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RF++ +LPHLLFYGPPGTGKT+TI+A AR++Y + MVLELNASDDRGI
Sbjct: 28 DIVNTIRRFVETGKLPHLLFYGPPGTGKTSTIIALAREIYG-PHYKNMVLELNASDDRGI 86
Query: 352 GIVRDQIFQFASTKTMHKSS----YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII 407
+VR+QI FAST+ + SS +KLIILDEADAMT+ AQN+LRRIIE++T N RFCI+
Sbjct: 87 DVVRNQIKSFASTRQIFTSSSSPQFKLIILDEADAMTSVAQNSLRRIIERYTKNCRFCIL 146
Query: 408 CNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
NY K+ PA+ SRCTRFRF P+D I SR+D
Sbjct: 147 ANYSHKLNPALISRCTRFRFHPIDEEAIRSRID 179
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 122/258 (47%), Gaps = 65/258 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP L E+ QDI++TI V+ K+ + + GT + + AL
Sbjct: 12 VEKYRPENLTEVYGQQDIVNTIR----RFVE-TGKLPHLLFYGPPGTGKTSTIIALAREI 66
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----YKLIILDEADAMTNDA 218
K VLELNASDDRGI +VR+QI FAST+ + SS +KLIILDEADAMT+ A
Sbjct: 67 YGPHYKNMVLELNASDDRGIDVVRNQIKSFASTRQIFTSSSSPQFKLIILDEADAMTSVA 126
Query: 219 QNALRR-----------------------------------------------------K 225
QN+LRR K
Sbjct: 127 QNSLRRIIERYTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEEAIRSRIDNVIIKEK 186
Query: 226 LPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADE--VNEDTVYNSVGYPTKTEITNIL 283
+ +TPD A++ LS GDMR+ LN+LQ+ A D+ ++ + +YN VG P +I +L
Sbjct: 187 VNITPDALNALLRLSQGDMRRSLNVLQACKAACGDDETIDIEMIYNCVGAPHPQDIEAVL 246
Query: 284 RWLLNESMDLCY-KINRF 300
+L + Y +N++
Sbjct: 247 DSILKQDWTTAYLTLNKY 264
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 104/194 (53%), Gaps = 29/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T N RFCI+ NY K+ PA+ SRCTRFRF P+D I SR+D VI +EKVN+TPD
Sbjct: 134 IERYTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEEAIRSRIDNVIIKEKVNITPDA 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD---------------------EVNEDTI---- 95
A++ LS GDMR+ LN+LQ+ A D E D+I
Sbjct: 194 LNALLRLSQGDMRRSLNVLQACKAACGDDETIDIEMIYNCVGAPHPQDIEAVLDSILKQD 253
Query: 96 FTLLVSRVEKYRP----STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE 151
+T + KY+ + +D + +I++ ++ ++ + + ++EY ++ G ++
Sbjct: 254 WTTAYLTLNKYKIDKGLALVDLITGFIEILNDYKVKPKTRIEYLKGLCEVEYGISKGGND 313
Query: 152 KIQLSALIAAFNSA 165
KIQ SA+I A
Sbjct: 314 KIQSSAIIGVIKQA 327
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 42/70 (60%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y+ + + KI+KGLAL D++T +++ ++ ++ + + ++EY ++ G ++KIQ
Sbjct: 258 YLTLNKYKIDKGLALVDLITGFIEILNDYKVKPKTRIEYLKGLCEVEYGISKGGNDKIQS 317
Query: 513 SALIAAFNSA 522
SA+I A
Sbjct: 318 SAIIGVIKQA 327
>gi|453083984|gb|EMF12029.1| replication factor C subunit 3 [Mycosphaerella populorum SO2202]
Length = 399
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/162 (58%), Positives = 112/162 (69%), Gaps = 13/162 (8%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+T+LA AR++Y MVLELNASDDRGI
Sbjct: 66 DILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASDDRGI 125
Query: 352 GIVRDQIFQFASTKTMHKSS-------------YKLIILDEADAMTNDAQNALRRIIEKF 398
+VR+QI F+STK + S YKLIILDEADAMT+ AQ ALRRI+EK+
Sbjct: 126 DVVREQIKTFSSTKQIFAGSFDKTRRDDSSIAHYKLIILDEADAMTSTAQMALRRIMEKY 185
Query: 399 TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
T N RFCII NY K+ PA+ SRCTRFRF PL + I +D
Sbjct: 186 TANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDADIRQLID 227
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 101/205 (49%), Gaps = 45/205 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL + I +D VI +E VN+ P
Sbjct: 182 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDADIRQLIDRVITEENVNIEPTA 241
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIF------- 96
+++ LS GDMR+ LN+LQ+ + D + ++TI+
Sbjct: 242 ADSLVTLSKGDMRRALNVLQACHASSTPLHIPGEPVVDDKAIPRDLITQETIYDCIAAPH 301
Query: 97 ---------TLL-----------VSRVEKYRPSTL-DELVSHQDIISTIEIPESMLVDLV 135
TLL ++ ++K + L D L + + ++ +E V +
Sbjct: 302 PADIQTIMKTLLNTQNVGSCMNTINTLKKAKGLALADILTALGEQLNEVEASAQTRVTWM 361
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIA 160
++DIEYRL+ G SE IQ LI
Sbjct: 362 EGLADIEYRLSGGGSESIQTGGLIG 386
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 78/138 (56%), Gaps = 23/138 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+ L ++ HQDI++TI + + L L+L GT + + AL
Sbjct: 50 VEKYRPNALADVSGHQDILATINKFVDSNRLPHLLLYG-------PPGTGKTSTVLALAR 102
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------------YKLI 206
++ + VLELNASDDRGI +VR+QI F+STK + S YKLI
Sbjct: 103 RIYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAGSFDKTRRDDSSIAHYKLI 162
Query: 207 ILDEADAMTNDAQNALRR 224
ILDEADAMT+ AQ ALRR
Sbjct: 163 ILDEADAMTSTAQMALRR 180
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K KGLAL DILT + ++ +E V + ++DIEYRL+ G SE IQ L
Sbjct: 325 INTLKKAKGLALADILTALGEQLNEVEASAQTRVTWMEGLADIEYRLSGGGSESIQTGGL 384
Query: 516 IA 517
I
Sbjct: 385 IG 386
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTVYNS 270
+ P +++ LS GDMR+ LN+LQ+ + D + ++T+Y+
Sbjct: 237 IEPTAADSLVTLSKGDMRRALNVLQACHASSTPLHIPGEPVVDDKAIPRDLITQETIYDC 296
Query: 271 VGYPTKTEITNILRWLLN 288
+ P +I I++ LLN
Sbjct: 297 IAAPHPADIQTIMKTLLN 314
>gi|344231516|gb|EGV63398.1| hypothetical protein CANTEDRAFT_98513 [Candida tenuis ATCC 10573]
Length = 331
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/143 (62%), Positives = 111/143 (77%), Gaps = 1/143 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +F+ E +LPHLLFYGPPGTGKT+TI+A AR++Y ++ MVLELNASDDRGI +VR+
Sbjct: 32 VRKFVQEGKLPHLLFYGPPGTGKTSTIIALAREIYG-PKYKNMVLELNASDDRGIDVVRN 90
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST + +KLIILDEADAMT+ AQNALRRIIEK+T N RFCI+ NY K+ P
Sbjct: 91 QIKDFASTMQIFSKGFKLIILDEADAMTSVAQNALRRIIEKYTKNTRFCILANYSHKLNP 150
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
A+ SRCTRFRF P+ + I RL
Sbjct: 151 ALVSRCTRFRFQPIHTDAIRERL 173
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 117/251 (46%), Gaps = 65/251 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLDE+ +I+ T+ + E L L+ + GT + + AL
Sbjct: 11 VEKYRPETLDEVYGQSEIVDTVRKFVQEGKLPHLL-------FYGPPGTGKTSTIIALAR 63
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ K VLELNASDDRGI +VR+QI FAST + +KLIILDEADAMT+ AQN
Sbjct: 64 EIYGPKYKNMVLELNASDDRGIDVVRNQIKDFASTMQIFSKGFKLIILDEADAMTSVAQN 123
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR K+
Sbjct: 124 ALRRIIEKYTKNTRFCILANYSHKLNPALVSRCTRFRFQPIHTDAIRERLKNVVIKEKIT 183
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATA---HADEVNEDTVYNSVGYPTKTEITNILR 284
+ PD ++++ LS GDMR+ LN+LQS + DE++E+ +YN +G P ++ +L
Sbjct: 184 IKPDAIESLLTLSQGDMRRALNVLQSCKASLDNPDDEIDEEMIYNCIGAPQPKDVETVLD 243
Query: 285 WLLNESMDLCY 295
+L + Y
Sbjct: 244 SILKDDWTTAY 254
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 30/195 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY K+ PA+ SRCTRFRF P+ + I RL V+ +EK+ + PD
Sbjct: 129 IEKYTKNTRFCILANYSHKLNPALVSRCTRFRFQPIHTDAIRERLKNVVIKEKITIKPDA 188
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA---HADEVNEDTIFTLLVSRVEKYRPSTLDELVSH 117
++++ LS GDMR+ LN+LQS + DE++E+ I+ + + K + LD ++
Sbjct: 189 IESLLTLSQGDMRRALNVLQSCKASLDNPDDEIDEEMIYNCIGAPQPKDVETVLDSILKD 248
Query: 118 Q---------------------------DIISTIEIPESMLVDLVLKMSDIEYRLAAGTS 150
I++ E+ + + ++ +S++EY ++ G +
Sbjct: 249 DWTTAYLTMDKFKRVKGLALIDLLEGFVGILNKYELDKQTKIKILKGLSEVEYGISKGGN 308
Query: 151 EKIQLSALIAAFNSA 165
+KI SA+I A
Sbjct: 309 DKINSSAIIGVIKDA 323
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y+ + + K KGLAL D+L ++++ E+ + + ++ +S++EY ++ G ++KI
Sbjct: 254 YLTMDKFKRVKGLALIDLLEGFVGILNKYELDKQTKIKILKGLSEVEYGISKGGNDKINS 313
Query: 513 SALIAAFNSA 522
SA+I A
Sbjct: 314 SAIIGVIKDA 323
>gi|225557253|gb|EEH05539.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 424
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/150 (63%), Positives = 108/150 (72%), Gaps = 11/150 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRFID+N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 89 DIISTINRFIDKNRLPHLLLYGPPGTGKTSTILALARRIYGVNNMRQMVLELNASDDRGI 148
Query: 352 GIVRDQIFQFASTKTMHK-----------SSYKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VRDQI FASTK + ++KLIILDEADAMT AQ ALRRI+EK+T
Sbjct: 149 DVVRDQIKTFASTKQIFSVAPTTKSESTLGAFKLIILDEADAMTATAQMALRRIMEKYTA 208
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 209 NTRFCIIANYTHKLSPALLSRCTRFRFSPL 238
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 52/202 (25%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D V+E+E+V + P+
Sbjct: 203 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEEDIRVLVDQVVEKEQVRIQPEA 262
Query: 61 KKAIIDLSDGDMRKVLNILQSA----------------ATAHADEVNEDTIFTLLVSRVE 104
+++ LS GDMR+ LN+LQ+ T+ + + ++TI+T + +
Sbjct: 263 IDSLVQLSKGDMRRALNVLQACHASSIPLPTKNGPKAQPTSEHETITDETIYTCIAAP-- 320
Query: 105 KYRPS--------------------TLDELVSHQ-----DIIST-------IEIPESMLV 132
PS T+ L S + DI+++ IE+P + +
Sbjct: 321 --HPSDIKTIITTLLTTSDVTSCLNTIKTLKSTKGLALADILTSISTELQRIEVPAATRI 378
Query: 133 DLVLKMSDIEYRLAAGTSEKIQ 154
+ ++DIE+RLA G E +Q
Sbjct: 379 VWMEGLADIEWRLAGGGGEMVQ 400
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 115/260 (44%), Gaps = 88/260 (33%)
Query: 102 RVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
RVEKYRP++L+E+ H DIISTI I ++ L L+L TS + L+ I
Sbjct: 72 RVEKYRPNSLEEVSGHHDIISTINRFIDKNRLPHLLLYGPP----GTGKTSTILALARRI 127
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-----------SSYKLIIL 208
N+ R VLELNASDDRGI +VRDQI FASTK + ++KLIIL
Sbjct: 128 YGVNNMRQM--VLELNASDDRGIDVVRDQIKTFASTKQIFSVAPTTKSESTLGAFKLIIL 185
Query: 209 DEADAMTNDAQNALRR-------------------------------------------- 224
DEADAMT AQ ALRR
Sbjct: 186 DEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEEDIRV 245
Query: 225 ---------KLPVTPDGKKAIIDLSDGDMRKVLNILQSA----------------ATAHA 259
++ + P+ +++ LS GDMR+ LN+LQ+ T+
Sbjct: 246 LVDQVVEKEQVRIQPEAIDSLVQLSKGDMRRALNVLQACHASSIPLPTKNGPKAQPTSEH 305
Query: 260 DEVNEDTVYNSVGYPTKTEI 279
+ + ++T+Y + P ++I
Sbjct: 306 ETITDETIYTCIAAPHPSDI 325
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
I+ +K KGLAL DILT IS + R+E+P + + + ++DIE+RLA G E +Q
Sbjct: 345 IKTLKSTKGLALADILTSISTELQRIEVPAATRIVWMEGLADIEWRLAGGGGEMVQ 400
>gi|71745690|ref|XP_827475.1| replication factor C subunit 3 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831640|gb|EAN77145.1| replication factor C, subunit 3, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331678|emb|CBH14672.1| replication factor C, subunit 3, putative [Trypanosoma brucei
gambiense DAL972]
Length = 357
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/150 (59%), Positives = 114/150 (76%), Gaps = 9/150 (6%)
Query: 299 RFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI 358
R ++ +PHLLFYGPPGTGKTTTI ACA L+ K + A VLE+NASDDRGI +VR Q+
Sbjct: 44 RLMNSGSMPHLLFYGPPGTGKTTTIKACAHHLFGKERLRANVLEMNASDDRGIDVVRQQV 103
Query: 359 FQFASTKTMH---------KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+FAST ++ +++KL+ILDEAD M++DAQ ALRRIIEKFT NVRFCI+CN
Sbjct: 104 REFASTSSIFFQNNPGNQTVTNFKLVILDEADQMSSDAQAALRRIIEKFTKNVRFCILCN 163
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+++KI PA+QSRCTRFRF P+ S ++ RL
Sbjct: 164 HINKIIPALQSRCTRFRFSPVKKSAMLPRL 193
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 109/196 (55%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT NVRFCI+CN+++KI PA+QSRCTRFRF P+ S ++ RL + +E V T +G
Sbjct: 149 IEKFTKNVRFCILCNHINKIIPALQSRCTRFRFSPVKKSAMLPRLKLIAREEGVPFTDEG 208
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------------------LV 100
+ LSDGDMR+ LN +Q A++ A E+ E++++
Sbjct: 209 LISAFRLSDGDMRRCLNTMQ-ASSMSAGEITEESVYRTTGNPTPTDVRVMVGDMLSHNYA 267
Query: 101 SRVEKYRPSTLDELVSHQD-------IISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ EK + +D+ VS D I+ +++P+ L++K++D+EY A GT E I
Sbjct: 268 TSWEKVQQLVVDKGVSTADLVREVHLIVMAMDLPQDCKCFLLIKLADVEYYAAGGTREMI 327
Query: 154 QLSALIAAFNSARDKL 169
+ ++ AF ++ L
Sbjct: 328 NIGGVLGAFQLVKEAL 343
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 116/240 (48%), Gaps = 69/240 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP+TLD++V+H++I+ T L++ M + + GT + + A
Sbjct: 21 VEKYRPTTLDDVVAHEEILDTTR----RLMN-SGSMPHLLFYGPPGTGKTTTIKACAHHL 75
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH---------KSSYKLIILDEAD 212
F R + VLE+NASDDRGI +VR Q+ +FAST ++ +++KL+ILDEAD
Sbjct: 76 FGKERLRANVLEMNASDDRGIDVVRQQVREFASTSSIFFQNNPGNQTVTNFKLVILDEAD 135
Query: 213 AMTNDAQNALRR------------------------------------------------ 224
M++DAQ ALRR
Sbjct: 136 QMSSDAQAALRRIIEKFTKNVRFCILCNHINKIIPALQSRCTRFRFSPVKKSAMLPRLKL 195
Query: 225 -----KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEI 279
+P T +G + LSDGDMR+ LN +Q A++ A E+ E++VY + G PT T++
Sbjct: 196 IAREEGVPFTDEGLISAFRLSDGDMRRCLNTMQ-ASSMSAGEITEESVYRTTGNPTPTDV 254
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 53/89 (59%)
Query: 438 RLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSD 497
R+ D+ N + K+Q++ ++KG++ D++ E+ L+V +++P+ L++K++D
Sbjct: 255 RVMVGDMLSHNYATSWEKVQQLVVDKGVSTADLVREVHLIVMAMDLPQDCKCFLLIKLAD 314
Query: 498 IEYRLAAGTSEKIQLSALIAAFNSARDKL 526
+EY A GT E I + ++ AF ++ L
Sbjct: 315 VEYYAAGGTREMINIGGVLGAFQLVKEAL 343
>gi|297842523|ref|XP_002889143.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
lyrata]
gi|297334984|gb|EFH65402.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
lyrata]
Length = 369
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/189 (52%), Positives = 131/189 (69%), Gaps = 10/189 (5%)
Query: 262 VNEDTVYNSVGYPTKTEITNILRWLLNESMD-------LCYKINRFIDENELPHLLFYGP 314
+N+ G P +++ T + +S+D + I+R +EN+LPHLL YGP
Sbjct: 21 INKGKDVAGFGAPPQSKATPWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGP 80
Query: 315 PGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKT--MHKSSY 372
PGTGKT+TILA ARKLY ++ M+LELNASDDRGI +VR QI FAST++ + KSS
Sbjct: 81 PGTGKTSTILAVARKLYG-PKYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSV 139
Query: 373 KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDS 432
KL++LDEADAMT DAQ ALRR+IEK+T + RF +I N+++KI PA+QSRCTRFRF PLD
Sbjct: 140 KLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDP 199
Query: 433 SLIMSRLDY 441
+ RL +
Sbjct: 200 LHVSQRLKH 208
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 138/296 (46%), Gaps = 77/296 (26%)
Query: 65 IDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTI 124
ID+ + RK +N + A A ++ T + VEKYRP +LD++ +H+DII TI
Sbjct: 10 IDVDEIQPRKPINKGKDVAGFGAPPQSKATPW------VEKYRPQSLDDVAAHRDIIDTI 63
Query: 125 E--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGI 182
+ E+ L L+L GT + + A+ + + +LELNASDDRGI
Sbjct: 64 DRLTNENKLPHLLLYG-------PPGTGKTSTILAVARKLYGPKYRNMILELNASDDRGI 116
Query: 183 GIVRDQIFQFASTKT--MHKSSYKLIILDEADAMTNDAQNALR----------------- 223
+VR QI FAST++ + KSS KL++LDEADAMT DAQ ALR
Sbjct: 117 DVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGN 176
Query: 224 ----------------RKLPVTP--------------------DGKKAIIDLSDGDMRKV 247
R P+ P G A++ LS+GDMRK
Sbjct: 177 HVNKIIPALQSRCTRFRFAPLDPLHVSQRLKHVIEAEGLGVSDCGLAALVRLSNGDMRKA 236
Query: 248 LNILQSAATA-------HADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYK 296
LNILQS A + ++ E+ VY G P +I I WLLN+ D CYK
Sbjct: 237 LNILQSTHMASKEITEKESKKITEEEVYLCTGNPLPKDIEQISHWLLNKPFDECYK 292
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 112/200 (56%), Gaps = 34/200 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T + RF +I N+++KI PA+QSRCTRFRF PLD + RL +VIE E + V+ G
Sbjct: 162 IEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDPLHVSQRLKHVIEAEGLGVSDCG 221
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA-------HADEVNEDTIFTLLVSRVEK-------- 105
A++ LS+GDMRK LNILQS A + ++ E+ ++ + + K
Sbjct: 222 LAALVRLSNGDMRKALNILQSTHMASKEITEKESKKITEEEVYLCTGNPLPKDIEQISHW 281
Query: 106 --YRP-----STLDELVSHQ-----DIIS-------TIEIPESMLVDLVLKMSDIEYRLA 146
+P + E+ + + DI+ I++P + V L+ ++DIEYRL+
Sbjct: 282 LLNKPFDECYKNISEIKTRKGLAIVDIVREVTMFVLKIKMPSHVSVQLINDLADIEYRLS 341
Query: 147 AGTSEKIQLSALIAAFNSAR 166
G ++K+QL A+I+ F AR
Sbjct: 342 FGCNDKLQLGAIISTFTHAR 361
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 50/71 (70%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I EIK KGLA+ DI+ E+++ V ++++P + V L+ ++DIEYRL+ G ++K+QL
Sbjct: 291 YKNISEIKTRKGLAIVDIVREVTMFVLKIKMPSHVSVQLINDLADIEYRLSFGCNDKLQL 350
Query: 513 SALIAAFNSAR 523
A+I+ F AR
Sbjct: 351 GAIISTFTHAR 361
>gi|294657961|ref|XP_002770526.1| DEHA2E22286p [Debaryomyces hansenii CBS767]
gi|199433083|emb|CAR65867.1| DEHA2E22286p [Debaryomyces hansenii CBS767]
Length = 343
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 91/148 (61%), Positives = 112/148 (75%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + +F+ E +LPHLLFYGPPGTGKT+TI+A AR++Y + MVLELNASDDRGI
Sbjct: 42 DIVDTVRKFVHEGKLPHLLFYGPPGTGKTSTIIALAREIYG-PNYKNMVLELNASDDRGI 100
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI FAST + +KLIILDEADAMT+ AQN+LRRIIEK+T N RFCI+ NY
Sbjct: 101 DVVRNQIKNFASTMQIFSKGFKLIILDEADAMTSVAQNSLRRIIEKYTKNTRFCILANYS 160
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
K+ PA+ SRCTRFRF P+ S I RL
Sbjct: 161 HKLNPALISRCTRFRFQPIGESAIQERL 188
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 117/250 (46%), Gaps = 65/250 (26%)
Query: 98 LLVSRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
L++ RVEKYRP +LDE+ QDI+ T+ + E L L+ + GT + +
Sbjct: 21 LILFRVEKYRPDSLDEVYGQQDIVDTVRKFVHEGKLPHLL-------FYGPPGTGKTSTI 73
Query: 156 SALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMT 215
AL K VLELNASDDRGI +VR+QI FAST + +KLIILDEADAMT
Sbjct: 74 IALAREIYGPNYKNMVLELNASDDRGIDVVRNQIKNFASTMQIFSKGFKLIILDEADAMT 133
Query: 216 NDAQNALRR--------------------------------------------------- 224
+ AQN+LRR
Sbjct: 134 SVAQNSLRRIIEKYTKNTRFCILANYSHKLNPALISRCTRFRFQPIGESAIQERLKNVII 193
Query: 225 --KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATA---HADEVNEDTVYNSVGYPTKTEI 279
L + + +K ++ LS+GDMR+ LN+LQ+ + DE+++D +Y +G P +I
Sbjct: 194 KENLSINEEAEKTLLKLSNGDMRRALNVLQAVKASLDHDDDEIDQDMIYECIGAPHPQDI 253
Query: 280 TNILRWLLNE 289
L +L +
Sbjct: 254 ETALDSILKD 263
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 104/195 (53%), Gaps = 30/195 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY K+ PA+ SRCTRFRF P+ S I RL VI +E +++ +
Sbjct: 144 IEKYTKNTRFCILANYSHKLNPALISRCTRFRFQPIGESAIQERLKNVIIKENLSINEEA 203
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA--------------------HADEVNE--DTI--- 95
+K ++ LS+GDMR+ LN+LQ+ + H ++ D+I
Sbjct: 204 EKTLLKLSNGDMRRALNVLQAVKASLDHDDDEIDQDMIYECIGAPHPQDIETALDSILKD 263
Query: 96 -FTLLVSRVEKYRPST----LDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+T +++Y+ + +D + +I++ ++ ++++ +S++EY ++ G +
Sbjct: 264 DWTTSFLTIDQYKRTKGLALIDMISGFVEILNNYQLKPKTRIEILKGLSEVEYGISKGGN 323
Query: 151 EKIQLSALIAAFNSA 165
EKIQ S +I A
Sbjct: 324 EKIQTSTIIGVIKDA 338
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 41/70 (58%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
++ I + K KGLAL D+++ +++ ++ ++++ +S++EY ++ G +EKIQ
Sbjct: 269 FLTIDQYKRTKGLALIDMISGFVEILNNYQLKPKTRIEILKGLSEVEYGISKGGNEKIQT 328
Query: 513 SALIAAFNSA 522
S +I A
Sbjct: 329 STIIGVIKDA 338
>gi|15223967|ref|NP_177871.1| replication factor C subunit 3 [Arabidopsis thaliana]
gi|12323400|gb|AAG51681.1|AC010704_25 putative replication factor C; 24844-22715 [Arabidopsis thaliana]
gi|17529332|gb|AAL38893.1| putative replication factor C [Arabidopsis thaliana]
gi|21436375|gb|AAM51357.1| putative replication factor C [Arabidopsis thaliana]
gi|332197861|gb|AEE35982.1| replication factor C subunit 3 [Arabidopsis thaliana]
Length = 369
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/152 (61%), Positives = 118/152 (77%), Gaps = 3/152 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+R +EN+LPHLL YGPPGTGKT+TILA ARKLY ++ M+LELNASDDRGI
Sbjct: 58 DIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYG-PKYRNMILELNASDDRGI 116
Query: 352 GIVRDQIFQFASTKT--MHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+VR QI FAST++ + KSS KL++LDEADAMT DAQ ALRR+IEK+T + RF +I N
Sbjct: 117 DVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGN 176
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+++KI PA+QSRCTRFRF PLD + RL +
Sbjct: 177 HVNKIIPALQSRCTRFRFAPLDGVHMSQRLKH 208
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 124/258 (48%), Gaps = 71/258 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +LD++ +H+DII TI+ E+ L L+L GT + + A+
Sbjct: 42 VEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYG-------PPGTGKTSTILAVAR 94
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKT--MHKSSYKLIILDEADAMTNDA 218
+ + +LELNASDDRGI +VR QI FAST++ + KSS KL++LDEADAMT DA
Sbjct: 95 KLYGPKYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDA 154
Query: 219 QNALRR-----------------------------------------------------K 225
Q ALRR +
Sbjct: 155 QFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAER 214
Query: 226 LPVTPDGKKAIIDLSDGDMRKVLNILQSAATA-------HADEVNEDTVYNSVGYPTKTE 278
L V+ G A++ LS+GDMRK LNILQS A + ++ E+ VY G P +
Sbjct: 215 LVVSDCGLAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKD 274
Query: 279 ITNILRWLLNESMDLCYK 296
I I WLLN+ D CYK
Sbjct: 275 IEQISHWLLNKPFDECYK 292
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 112/200 (56%), Gaps = 34/200 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T + RF +I N+++KI PA+QSRCTRFRF PLD + RL +VIE E++ V+ G
Sbjct: 162 IEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCG 221
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA-------HADEVNEDTIFTLL-------------- 99
A++ LS+GDMRK LNILQS A + ++ E+ ++
Sbjct: 222 LAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQISHW 281
Query: 100 ------------VSRVEKYRPSTLDELVSHQDI-ISTIEIPESMLVDLVLKMSDIEYRLA 146
VS ++ + + ++V + I I++P ++ V L+ ++DIEYRL+
Sbjct: 282 LLNKPFDECYKDVSEIKTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYRLS 341
Query: 147 AGTSEKIQLSALIAAFNSAR 166
G ++K+QL A+I+ F AR
Sbjct: 342 FGCNDKLQLGAIISTFTHAR 361
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 51/71 (71%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y + EIK KGLA+ DI+ EI+L + ++++P ++ V L+ ++DIEYRL+ G ++K+QL
Sbjct: 291 YKDVSEIKTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYRLSFGCNDKLQL 350
Query: 513 SALIAAFNSAR 523
A+I+ F AR
Sbjct: 351 GAIISTFTHAR 361
>gi|296421944|ref|XP_002840523.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636741|emb|CAZ84714.1| unnamed protein product [Tuber melanosporum]
Length = 387
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/159 (59%), Positives = 112/159 (70%), Gaps = 9/159 (5%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+ N LPHLLFYGPPGTGKT+TILA AR +Y VLELNASDDRGI
Sbjct: 62 DILTTINKFVQTNRLPHLLFYGPPGTGKTSTILALARHIYGAHNIRQQVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTKTMHKS---------SYKLIILDEADAMTNDAQNALRRIIEKFTTNV 402
+VR+QI FASTK + + S+KLIILDEADAMT+ AQNALRRI+EK+T N
Sbjct: 122 EVVREQIKTFASTKQIFGASTKTDGELGSFKLIILDEADAMTSTAQNALRRIMEKYTANT 181
Query: 403 RFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
RFCII NY K+ A+ SRCTRFRF PL + R+D+
Sbjct: 182 RFCIIANYTHKLNAALLSRCTRFRFSPLPIDALRRRVDH 220
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 127/279 (45%), Gaps = 88/279 (31%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL+++ H+DI++TI + + L L+ + GT + + AL
Sbjct: 46 VEKYRPDTLNDVSGHEDILTTINKFVQTNRLPHLL-------FYGPPGTGKTSTILALAR 98
Query: 161 AFNSARD-KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS---------SYKLIILDE 210
A + + +VLELNASDDRGI +VR+QI FASTK + + S+KLIILDE
Sbjct: 99 HIYGAHNIRQQVLELNASDDRGIEVVREQIKTFASTKQIFGASTKTDGELGSFKLIILDE 158
Query: 211 ADAMTNDAQNALRR---------------------------------------------- 224
ADAMT+ AQNALRR
Sbjct: 159 ADAMTSTAQNALRRIMEKYTANTRFCIIANYTHKLNAALLSRCTRFRFSPLPIDALRRRV 218
Query: 225 -------KLPVTPDGKKAIIDLSDGDMRKVLNILQSA--------------ATAHADEVN 263
K+ +TP A++ LS GDMR+ LN+LQ+ TA +++
Sbjct: 219 DHVIDAEKVKITPSAVDALLQLSRGDMRRSLNVLQACHASSTPLDDKGRPDPTAEREDIT 278
Query: 264 EDTVYNSVGYPTKTEITNILRWLLNESMDLCYKINRFID 302
E +Y+ + P ++ IL+ LL S D+ + ID
Sbjct: 279 ETHIYDCIAAPHPEDVQIILKTLL--SSDITTSLRTIID 315
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 101/202 (50%), Gaps = 41/202 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K+ A+ SRCTRFRF PL + R+D+VI+ EKV +TP
Sbjct: 174 MEKYTANTRFCIIANYTHKLNAALLSRCTRFRFSPLPIDALRRRVDHVIDAEKVKITPSA 233
Query: 61 KKAIIDLSDGDMRKVLNILQSA--------------ATAHADEVNEDTIF---------- 96
A++ LS GDMR+ LN+LQ+ TA +++ E I+
Sbjct: 234 VDALLQLSRGDMRRSLNVLQACHASSTPLDDKGRPDPTAEREDITETHIYDCIAAPHPED 293
Query: 97 ------TLLVSRVEKYRPSTLD-----------ELVSHQDIISTIEIPESMLVDLVLKMS 139
TLL S + + +D L S D + +E+P+ + + ++
Sbjct: 294 VQIILKTLLSSDITTSLRTIIDIKTKKGLALADLLSSLSDELERLEVPKQTRILWMEGLA 353
Query: 140 DIEYRLAAGTSEKIQLSALIAA 161
++E+R+ +G SE IQ AL A
Sbjct: 354 EVEWRVGSGGSEGIQTGALAGA 375
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 429 PLDSSLIMSRLDYDDI--SFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPES 486
P D +I+ L DI S II +IK +KGLAL D+L+ +S + RLE+P+
Sbjct: 291 PEDVQIILKTLLSSDITTSLRTII-------DIKTKKGLALADLLSSLSDELERLEVPKQ 343
Query: 487 MLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 518
+ + ++++E+R+ +G SE IQ AL A
Sbjct: 344 TRILWMEGLAEVEWRVGSGGSEGIQTGALAGA 375
>gi|452981800|gb|EME81559.1| hypothetical protein MYCFIDRAFT_188590 [Pseudocercospora fijiensis
CIRAD86]
Length = 367
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/151 (60%), Positives = 108/151 (71%), Gaps = 12/151 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+T+LA ARK+Y MVLELNASDDRGI
Sbjct: 63 DILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARKIYGNKNMRQMVLELNASDDRGI 122
Query: 352 GIVRDQIFQFASTKTMHKSS------------YKLIILDEADAMTNDAQNALRRIIEKFT 399
+VR+QI F+STK + S YKLIILDEADAMT+ AQ ALRRI+E++T
Sbjct: 123 DVVREQIKTFSSTKQIFAGSFDKSKQDDSMATYKLIILDEADAMTSTAQMALRRIMERYT 182
Query: 400 TNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 183 ANTRFCIIANYTHKLSPALLSRCTRFRFSPL 213
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 56/81 (69%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E++T N RFCII NY K++PA+ SRCTRFRF PL I +D VI +E VN+ D
Sbjct: 178 MERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEPDIRRLVDKVIIEEGVNIASDA 237
Query: 61 KKAIIDLSDGDMRKVLNILQS 81
+++ LS GDMR+ LN+LQ+
Sbjct: 238 TDSLVTLSKGDMRRALNVLQA 258
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 79/137 (57%), Gaps = 22/137 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP++L ++ HQDI++TI + + L L+L GT + + AL
Sbjct: 47 VEKYRPNSLSDVSGHQDILATINKFVDSNRLPHLLLYG-------PPGTGKTSTVLALAR 99
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSS------------YKLII 207
++ + VLELNASDDRGI +VR+QI F+STK + S YKLII
Sbjct: 100 KIYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAGSFDKSKQDDSMATYKLII 159
Query: 208 LDEADAMTNDAQNALRR 224
LDEADAMT+ AQ ALRR
Sbjct: 160 LDEADAMTSTAQMALRR 176
>gi|389594993|ref|XP_003722719.1| putative replication factor C, subunit 3 [Leishmania major strain
Friedlin]
gi|323363947|emb|CBZ12953.1| putative replication factor C, subunit 3 [Leishmania major strain
Friedlin]
Length = 364
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 91/166 (54%), Positives = 115/166 (69%), Gaps = 16/166 (9%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + +D +PHLL YGPPGTGKTTTI ACA LY KA+ A VLE+NASDDRGI
Sbjct: 36 DILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYLYGKARVRANVLEMNASDDRGI 95
Query: 352 GIVRDQIFQFASTKTMH----------------KSSYKLIILDEADAMTNDAQNALRRII 395
+VR Q +FAST ++ + +KL+ILDEAD M++DAQ ALRR+I
Sbjct: 96 DVVRQQTREFASTSSIFSMMGTGSSTGGGSGGPAAKFKLVILDEADQMSHDAQAALRRVI 155
Query: 396 EKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
EK+T NVRFCI+CN+++KI PA+QSRCTRFRF P+ S +M RL Y
Sbjct: 156 EKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSSMMPRLRY 201
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 109/190 (57%), Gaps = 28/190 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCI+CN+++KI PA+QSRCTRFRF P+ S +M RL YV EQE V T DG
Sbjct: 155 IEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSSMMPRLRYVAEQEGVKYTTDG 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF-----------TLLVSRV------ 103
A LS GD+R+ LN +Q++A + A+E+ E++++ T +VS +
Sbjct: 215 LAAAFRLSHGDLRRCLNTMQASALS-ANEITEESVYRVTGNPTPADVTAIVSDMLSSDFA 273
Query: 104 ---EKYRPSTLDELVSHQD-------IISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
K S + + +S D ++ +++P+ L++K+SD+EY A G E
Sbjct: 274 TSWVKAEESVVQKGISMADLTREIHPVMMAMDLPQDCKCFLLMKLSDLEYYAAGGARESA 333
Query: 154 QLSALIAAFN 163
L L+ AF
Sbjct: 334 VLGGLLGAFQ 343
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 121/256 (47%), Gaps = 76/256 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRPSTL+ +V+H+DI+ST+ L+D M + GT + + A
Sbjct: 20 VEKYRPSTLESVVAHEDILSTLR----HLMD-SGNMPHLLLYGPPGTGKTTTIKACAYYL 74
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH----------------KSSYKL 205
+ AR + VLE+NASDDRGI +VR Q +FAST ++ + +KL
Sbjct: 75 YGKARVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGTGSSTGGGSGGPAAKFKL 134
Query: 206 IILDEADAMTNDAQNALRRKL---------------------------------PV---- 228
+ILDEAD M++DAQ ALRR + PV
Sbjct: 135 VILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSS 194
Query: 229 ----------------TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVG 272
T DG A LS GD+R+ LN +Q++A + A+E+ E++VY G
Sbjct: 195 MMPRLRYVAEQEGVKYTTDGLAAAFRLSHGDLRRCLNTMQASALS-ANEITEESVYRVTG 253
Query: 273 YPTKTEITNILRWLLN 288
PT ++T I+ +L+
Sbjct: 254 NPTPADVTAIVSDMLS 269
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488
P D + I+S + D + ++K +E ++KG+++ D+ EI ++ +++P+
Sbjct: 257 PADVTAIVSDMLSSDFA-----TSWVKAEESVVQKGISMADLTREIHPVMMAMDLPQDCK 311
Query: 489 VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 520
L++K+SD+EY A G E L L+ AF
Sbjct: 312 CFLLMKLSDLEYYAAGGARESAVLGGLLGAFQ 343
>gi|295658083|ref|XP_002789604.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283157|gb|EEH38723.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 404
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 94/150 (62%), Positives = 106/150 (70%), Gaps = 11/150 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN FID N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 64 DVIGTINTFIDSNRLPHLLLYGPPGTGKTSTILALARRIYGAKNMRQMVLELNASDDRGI 123
Query: 352 GIVRDQIFQFASTKTMHK-----------SSYKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VRDQI FASTK + ++KLIILDEADAMT AQ ALRRI+EK+T
Sbjct: 124 DVVRDQIKTFASTKQIFSVAPVAKSESSLGAFKLIILDEADAMTATAQMALRRIMEKYTA 183
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 184 NARFCIIANYTHKLSPALLSRCTRFRFSPL 213
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 44/198 (22%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I + ++ VIE+E+V + P+
Sbjct: 178 MEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRALVNQVIEKEQVRIQPEA 237
Query: 61 KKAIIDLSDGDMRKVLNILQSA----------------ATAHADEVNEDTIFTLLVSRVE 104
++++LS GDMR+ LN+LQ+ TA + V+++TI+T + +
Sbjct: 238 IDSLVELSKGDMRRALNVLQACHASSIPLPIKNAPKDQPTAEHETVSQETIYTCIAAPHP 297
Query: 105 KYRPSTLDELVSHQDIIST----------------------------IEIPESMLVDLVL 136
+ + L++ D+ S IE+P + V +
Sbjct: 298 ADIKTIITALLTTSDVTSCLNTIQSLKSNKGLALADILTALSAELQRIEVPAAARVVWME 357
Query: 137 KMSDIEYRLAAGTSEKIQ 154
++DIE+RLA+G E +Q
Sbjct: 358 GLADIEWRLASGGGEMVQ 375
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 119/271 (43%), Gaps = 90/271 (33%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP++L+++ H D+I TI I + L L+L GT + + AL
Sbjct: 48 VEKYRPNSLEDVSGHHDVIGTINTFIDSNRLPHLLLYGP-------PGTGKTSTILALAR 100
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK-----------SSYKLIIL 208
A++ + VLELNASDDRGI +VRDQI FASTK + ++KLIIL
Sbjct: 101 RIYGAKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPVAKSESSLGAFKLIIL 160
Query: 209 DEADAMTNDAQNALRR-------------------------------------------- 224
DEADAMT AQ ALRR
Sbjct: 161 DEADAMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRA 220
Query: 225 ---------KLPVTPDGKKAIIDLSDGDMRKVLNILQSA----------------ATAHA 259
++ + P+ ++++LS GDMR+ LN+LQ+ TA
Sbjct: 221 LVNQVIEKEQVRIQPEAIDSLVELSKGDMRRALNVLQACHASSIPLPIKNAPKDQPTAEH 280
Query: 260 DEVNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ V+++T+Y + P +I I+ LL S
Sbjct: 281 ETVSQETIYTCIAAPHPADIKTIITALLTTS 311
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
IQ +K KGLAL DILT +S + R+E+P + V + ++DIE+RLA+G E +Q
Sbjct: 320 IQSLKSNKGLALADILTALSAELQRIEVPAAARVVWMEGLADIEWRLASGGGEMVQ 375
>gi|398392868|ref|XP_003849893.1| hypothetical protein MYCGRDRAFT_110326 [Zymoseptoria tritici
IPO323]
gi|339469771|gb|EGP84869.1| hypothetical protein MYCGRDRAFT_110326 [Zymoseptoria tritici
IPO323]
Length = 460
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 92/151 (60%), Positives = 108/151 (71%), Gaps = 12/151 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+T+LA AR++Y MVLELNASDDRGI
Sbjct: 66 DILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASDDRGI 125
Query: 352 GIVRDQIFQFASTKTMHKSS------------YKLIILDEADAMTNDAQNALRRIIEKFT 399
+VR+QI F+STK + S YKLIILDEADAMT+ AQ ALRRI+EK+T
Sbjct: 126 DVVREQIKTFSSTKQIFAGSFDKSAQQSTIANYKLIILDEADAMTSTAQMALRRIMEKYT 185
Query: 400 TNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 186 ANTRFCIIANYTHKLSPALLSRCTRFRFSPL 216
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 103/211 (48%), Gaps = 45/211 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D V+ +E VN+ PD
Sbjct: 181 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEVDIRQLVDKVVREEDVNIAPDA 240
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIF------- 96
+++ LS GDMR+ LN+LQ+ + D + +TI+
Sbjct: 241 TDSLVTLSKGDMRRALNVLQACHASSTPLNVPGEKVKTGKDITRDLITNETIYDCIAAPH 300
Query: 97 ---------TLL-----------VSRVEKYRPSTL-DELVSHQDIISTIEIPESMLVDLV 135
TLL ++ ++K + L D L + + +S +E+P V +
Sbjct: 301 PGDIATIVQTLLTTANVGSCLSTINTLKKTKGLALADILTAMGEQLSELEVPTQTRVAWL 360
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 166
++DIEYRL+ G SE +Q L S +
Sbjct: 361 EGLADIEYRLSGGGSESLQTGGLQGRHGSVQ 391
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 80/137 (58%), Gaps = 22/137 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS+LD++ HQDI++TI + + L L+L GT + + AL
Sbjct: 50 VEKYRPSSLDDVHGHQDILATINKFVDSNRLPHLLLYG-------PPGTGKTSTVLALAR 102
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSS------------YKLII 207
++ + VLELNASDDRGI +VR+QI F+STK + S YKLII
Sbjct: 103 RIYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAGSFDKSAQQSTIANYKLII 162
Query: 208 LDEADAMTNDAQNALRR 224
LDEADAMT+ AQ ALRR
Sbjct: 163 LDEADAMTSTAQMALRR 179
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K KGLAL DILT + + LE+P V + ++DIEYRL+ G SE +Q L
Sbjct: 324 INTLKKTKGLALADILTAMGEQLSELEVPTQTRVAWLEGLADIEYRLSGGGSESLQTGGL 383
Query: 516 IAAFNSARDKLEAPP 530
S + P
Sbjct: 384 QGRHGSVQPSSTTQP 398
>gi|261200183|ref|XP_002626492.1| activator 1 subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239593564|gb|EEQ76145.1| activator 1 subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239607557|gb|EEQ84544.1| replication factor C [Ajellomyces dermatitidis ER-3]
gi|327357386|gb|EGE86243.1| replication factor C [Ajellomyces dermatitidis ATCC 18188]
Length = 404
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 95/150 (63%), Positives = 107/150 (71%), Gaps = 11/150 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRFID N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 64 DIIGTINRFIDTNRLPHLLLYGPPGTGKTSTILALARRIYGVKNMRQMVLELNASDDRGI 123
Query: 352 GIVRDQIFQFASTKTMHK-----------SSYKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VRDQI FASTK + ++KLIILDEADAMT AQ ALRRI+EK+T
Sbjct: 124 DVVRDQIKTFASTKQIFSMAPAAKAESTLGAFKLIILDEADAMTAVAQMALRRIMEKYTA 183
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 184 NARFCIIANYSHKLSPALLSRCTRFRFSPL 213
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 96/198 (48%), Gaps = 44/198 (22%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VIE E+V + P+
Sbjct: 178 MEKYTANARFCIIANYSHKLSPALLSRCTRFRFSPLKEKDIRVLVDQVIETEQVRIQPEA 237
Query: 61 KKAIIDLSDGDMRKVLNILQSA----------------ATAHADEVNEDTIFTLLVSRVE 104
+++ LS GDMR+ LN+LQ+ T + + ++TI+T + +
Sbjct: 238 IDSLVKLSKGDMRRALNVLQACHASSIPLPIKNAPKDQPTPDHETITDETIYTCIAAPHP 297
Query: 105 KYRPSTLDELVSHQDIIST----------------------------IEIPESMLVDLVL 136
+ + L++ D+ S IE+P + + +
Sbjct: 298 SDIKTIITALLTTSDVTSCLNTIKTLKSNKGLALADILTSISTELQHIEVPAATRIIWME 357
Query: 137 KMSDIEYRLAAGTSEKIQ 154
++DIE+RLA G E +Q
Sbjct: 358 GLADIEWRLAGGGGEMVQ 375
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 78/136 (57%), Gaps = 21/136 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+TL+++ HQDII TI I + L L+L GT + + AL
Sbjct: 48 VEKYRPNTLEDVSGHQDIIGTINRFIDTNRLPHLLLYGP-------PGTGKTSTILALAR 100
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK-----------SSYKLIIL 208
++ + VLELNASDDRGI +VRDQI FASTK + ++KLIIL
Sbjct: 101 RIYGVKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPAAKAESTLGAFKLIIL 160
Query: 209 DEADAMTNDAQNALRR 224
DEADAMT AQ ALRR
Sbjct: 161 DEADAMTAVAQMALRR 176
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
I+ +K KGLAL DILT IS + +E+P + + + ++DIE+RLA G E +Q
Sbjct: 320 IKTLKSNKGLALADILTSISTELQHIEVPAATRIIWMEGLADIEWRLAGGGGEMVQ 375
>gi|345560437|gb|EGX43562.1| hypothetical protein AOL_s00215g298 [Arthrobotrys oligospora ATCC
24927]
Length = 393
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/166 (57%), Positives = 120/166 (72%), Gaps = 16/166 (9%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLY---TKAQFNAMVLELNASDD 348
D+ IN+FI +N+LPHLLFYGPPGTGKT+TILA AR++Y ++A VLELNASDD
Sbjct: 60 DILTTINKFIAQNKLPHLLFYGPPGTGKTSTILALARRIYNTKSEAALRHHVLELNASDD 119
Query: 349 RGIGIVRDQIFQFASTKTMHKSS-------------YKLIILDEADAMTNDAQNALRRII 395
RGI +VR+QI FASTK + S+ +KLIILDEADAMT+ AQNALRRI+
Sbjct: 120 RGIDVVREQIKTFASTKQIFSSAKLEPSNTTSSIAQFKLIILDEADAMTSTAQNALRRIM 179
Query: 396 EKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
EK+T+NVRFCII NY K+ A+ SRCTRFRF PL + R+++
Sbjct: 180 EKYTSNVRFCIIANYTHKLNAALLSRCTRFRFSPLPIPALRRRVEH 225
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 121/277 (43%), Gaps = 95/277 (34%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +LD++ H+DI++TI I ++ L L+ + GT + + AL
Sbjct: 44 VEKYRPQSLDDVSGHEDILTTINKFIAQNKLPHLL-------FYGPPGTGKTSTILALAR 96
Query: 161 A-FNSARD---KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------------Y 203
+N+ + + VLELNASDDRGI +VR+QI FASTK + S+ +
Sbjct: 97 RIYNTKSEAALRHHVLELNASDDRGIDVVREQIKTFASTKQIFSSAKLEPSNTTSSIAQF 156
Query: 204 KLIILDEADAMTNDAQNALRR-----------------------------------KLPV 228
KLIILDEADAMT+ AQNALRR LP+
Sbjct: 157 KLIILDEADAMTSTAQNALRRIMEKYTSNVRFCIIANYTHKLNAALLSRCTRFRFSPLPI 216
Query: 229 TP---------DGKKAIID---------LSDGDMRKVLNILQ----------------SA 254
D + ID LS GDMR+ LN+LQ S
Sbjct: 217 PALRRRVEHVIDSENVRIDDTAVDALLHLSRGDMRRALNVLQACFAGSTPLDKNGVALSG 276
Query: 255 ATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESM 291
D + E ++Y+ V P +I I+ LL E +
Sbjct: 277 PDVQRDLITETSIYDCVAAPHPEDIQAIMNTLLTEDI 313
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 43/208 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T+NVRFCII NY K+ A+ SRCTRFRF PL + R+++VI+ E V +
Sbjct: 179 MEKYTSNVRFCIIANYTHKLNAALLSRCTRFRFSPLPIPALRRRVEHVIDSENVRIDDTA 238
Query: 61 KKAIIDLSDGDMRKVLNILQ----------------SAATAHADEVNEDTIF-------- 96
A++ LS GDMR+ LN+LQ S D + E +I+
Sbjct: 239 VDALLHLSRGDMRRALNVLQACFAGSTPLDKNGVALSGPDVQRDLITETSIYDCVAAPHP 298
Query: 97 --------TLL----------VSRVEKYRPSTLDELVS-HQDIISTIEIPESMLVDLVLK 137
TLL V+R++ + L +++ + + +E+ + V +
Sbjct: 299 EDIQAIMNTLLTEDITTALITVNRIKTLKGLALTDILQVVAEELCRLEVKPHVRVLWLAG 358
Query: 138 MSDIEYRLAAGTSEKIQLSALIAAFNSA 165
M++IE R+AAG +E IQ + +
Sbjct: 359 MAEIEGRVAAGGNESIQTAGFAGVVKAG 386
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488
P D IM+ L +DI+ I + IK KGLALTDIL ++ + RLE+ +
Sbjct: 298 PEDIQAIMNTLLTEDIT-----TALITVNRIKTLKGLALTDILQVVAEELCRLEVKPHVR 352
Query: 489 VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
V + M++IE R+AAG +E IQ + +
Sbjct: 353 VLWLAGMAEIEGRVAAGGNESIQTAGFAGVVKAG 386
>gi|448115886|ref|XP_004202928.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
gi|359383796|emb|CCE79712.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
Length = 331
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/144 (60%), Positives = 112/144 (77%), Gaps = 1/144 (0%)
Query: 287 LNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNAS 346
+N D+ + +F+ E +LPHLLFYGPPGTGKT+TI+A A+++Y + + MVLELNAS
Sbjct: 24 VNGQNDIVSTVRKFVHEGKLPHLLFYGPPGTGKTSTIIALAKEIYG-SNYRNMVLELNAS 82
Query: 347 DDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
DDRGI +VR+QI +FAST + +KLIILDEADAMT+ AQN+LRRIIEK+T N RFCI
Sbjct: 83 DDRGIDVVRNQIKEFASTMQIFSKGFKLIILDEADAMTSTAQNSLRRIIEKYTKNTRFCI 142
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPL 430
+ NY K+ PA+ SRCTRFRF P+
Sbjct: 143 LANYAHKLNPALVSRCTRFRFSPI 166
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 117/251 (46%), Gaps = 65/251 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS+LDE+ DI+ST+ + E L L+ + GT + + AL
Sbjct: 13 VEKYRPSSLDEVNGQNDIVSTVRKFVHEGKLPHLL-------FYGPPGTGKTSTIIALAK 65
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ + VLELNASDDRGI +VR+QI +FAST + +KLIILDEADAMT+ AQN
Sbjct: 66 EIYGSNYRNMVLELNASDDRGIDVVRNQIKEFASTMQIFSKGFKLIILDEADAMTSTAQN 125
Query: 221 ALRR-----------------------------------------------------KLP 227
+LRR KL
Sbjct: 126 SLRRIIEKYTKNTRFCILANYAHKLNPALVSRCTRFRFSPISQEAVNTTIATVITKEKLK 185
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATA---HADEVNEDTVYNSVGYPTKTEITNILR 284
++ D +++ L+ GDMRK LN+LQ+ + DE++ + +YN +G +I +L
Sbjct: 186 ISSDAIESLCTLARGDMRKALNVLQACKASLQDDNDEIDTNMIYNCIGAAHPKDIEAVLD 245
Query: 285 WLLNESMDLCY 295
+L + Y
Sbjct: 246 SILQDEWTSSY 256
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 103/195 (52%), Gaps = 30/195 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY K+ PA+ SRCTRFRF P+ + + + VI +EK+ ++ D
Sbjct: 131 IEKYTKNTRFCILANYAHKLNPALVSRCTRFRFSPISQEAVNTTIATVITKEKLKISSDA 190
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA---HADEVNEDTIFTLLVSRVEKYRPSTLDELVSH 117
+++ L+ GDMRK LN+LQ+ + DE++ + I+ + + K + LD ++
Sbjct: 191 IESLCTLARGDMRKALNVLQACKASLQDDNDEIDTNMIYNCIGAAHPKDIEAVLDSILQD 250
Query: 118 Q---------------------------DIISTIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+ I++ E+ + ++++ +SDIEY ++ S
Sbjct: 251 EWTSSYNTISICKREKGLALIDLLSGFVSILNKYELKPATRIEILRGLSDIEYAISKAGS 310
Query: 151 EKIQLSALIAAFNSA 165
+KIQ SA+IA SA
Sbjct: 311 DKIQTSAVIAVIKSA 325
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I K EKGLAL D+L+ ++++ E+ + ++++ +SDIEY ++ S+KIQ
Sbjct: 256 YNTISICKREKGLALIDLLSGFVSILNKYELKPATRIEILRGLSDIEYAISKAGSDKIQT 315
Query: 513 SALIAAFNSA 522
SA+IA SA
Sbjct: 316 SAVIAVIKSA 325
>gi|145343698|ref|XP_001416450.1| replication factor C subunit 5 (36kDa), probable [Ostreococcus
lucimarinus CCE9901]
gi|144576675|gb|ABO94743.1| replication factor C subunit 5 (36kDa), probable [Ostreococcus
lucimarinus CCE9901]
Length = 332
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 88/145 (60%), Positives = 114/145 (78%), Gaps = 1/145 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
IN+F D +LPHLLF+GPPGTGKT+TILA A++LY F+ MVLELNASD RGI +VRD
Sbjct: 37 INKFADGGQLPHLLFHGPPGTGKTSTILALAKELY-GLNFSNMVLELNASDARGINVVRD 95
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
+I FAST +++KL+I+DE D+MT DAQ ALRRI+EK+T + RFC+ICNY SK+ P
Sbjct: 96 EIQSFASTMRPFSTTFKLVIMDECDSMTKDAQFALRRIMEKYTQHTRFCLICNYASKVIP 155
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
A+QSRCT+FRF P+ S ++ RL +
Sbjct: 156 ALQSRCTKFRFSPIASGDMLQRLRH 180
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 26/192 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T + RFC+ICNY SK+ PA+QSRCT+FRF P+ S ++ RL +++ E +++ +
Sbjct: 134 MEKYTQHTRFCLICNYASKVIPALQSRCTKFRFSPIASGDMLQRLRHIVNSENFSISDNS 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAA--------------TAHADEVNEDTIFTLLVSRVEKY 106
I L +GDMRK +NILQS + T H ++ D + L++ +
Sbjct: 194 LATIQKLGEGDMRKTVNILQSVSLSASVVTDDAIHLITGHVGQLQVDELLRFLLNEPLQG 253
Query: 107 RPSTLDELVSHQ-----DIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
+ L Q DI+ T+ + L+ +SDIEY L+ SEK Q
Sbjct: 254 TFEHFNRLKCTQNFALVDIVKPLSESLLTLHMAAGTRARLLRGLSDIEYSLSFACSEKNQ 313
Query: 155 LSALIAAFNSAR 166
LI+ F+ AR
Sbjct: 314 TLYLISLFHQAR 325
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 115/257 (44%), Gaps = 72/257 (28%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSD------IEYRLAAGTSEKIQLSA 157
EKYRP L E+V+H+ I VD++ K +D + + GT + + A
Sbjct: 17 EKYRPVGLSEVVAHKAI-----------VDVINKFADGGQLPHLLFHGPPGTGKTSTILA 65
Query: 158 LIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
L VLELNASD RGI +VRD+I FAST +++KL+I+DE D+MT D
Sbjct: 66 LAKELYGLNFSNMVLELNASDARGINVVRDEIQSFASTMRPFSTTFKLVIMDECDSMTKD 125
Query: 218 AQNALRR------------------------------KLPVTP----------------- 230
AQ ALRR K +P
Sbjct: 126 AQFALRRIMEKYTQHTRFCLICNYASKVIPALQSRCTKFRFSPIASGDMLQRLRHIVNSE 185
Query: 231 -----DGKKAIID-LSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
D A I L +GDMRK +NILQS + + A V +D ++ G+ + ++ +LR
Sbjct: 186 NFSISDNSLATIQKLGEGDMRKTVNILQSVSLS-ASVVTDDAIHLITGHVGQLQVDELLR 244
Query: 285 WLLNESMDLCYK-INRF 300
+LLNE + ++ NR
Sbjct: 245 FLLNEPLQGTFEHFNRL 261
>gi|317036017|ref|XP_001397471.2| replication factor C subunit 3 [Aspergillus niger CBS 513.88]
gi|350633381|gb|EHA21746.1| hypothetical protein ASPNIDRAFT_49138 [Aspergillus niger ATCC 1015]
Length = 396
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 108/152 (71%), Gaps = 13/152 (8%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F++ N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 63 DILATINKFVEANRLPHLLLYGPPGTGKTSTILALARRIYGAKNMRQMVLELNASDDRGI 122
Query: 352 GIVRDQIFQFASTKTMHK-------------SSYKLIILDEADAMTNDAQNALRRIIEKF 398
+VR+QI FASTK + +SYKLIILDEADAMT AQ ALRRI+EK+
Sbjct: 123 DVVREQIKTFASTKQIFSMAPSSTSTSSSTLASYKLIILDEADAMTATAQMALRRIMEKY 182
Query: 399 TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
T N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 183 TANTRFCIIANYTHKLSPALLSRCTRFRFSPL 214
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 103/208 (49%), Gaps = 49/208 (23%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL + I +D VIE+E+VN+ P+
Sbjct: 179 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDIVIEKEQVNIQPEA 238
Query: 61 KKAIIDLSDGDMRKVLNILQSA------------------------------------AT 84
+++ LS GDMR+ LN+LQ+ A
Sbjct: 239 VDSLVRLSKGDMRRALNVLQACFASSIPLPMKNAPKDQEAKEKPEAEVITNETIYDCIAA 298
Query: 85 AHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ------------DIISTIEIPESMLV 132
H ++ E+ + TLL + ST++ L +++ D + +E+P V
Sbjct: 299 PHPSDI-EEIMTTLLATSDVTSCLSTINTLKANKGLALADILAALGDQLQRLEVPAQTRV 357
Query: 133 DLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+ +++IE+RLA G SE +Q L+
Sbjct: 358 TWLEGLAEIEWRLAGGGSESMQTGGLVG 385
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 121/276 (43%), Gaps = 95/276 (34%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+TL+++ HQDI++TI + + L L+L GT + + AL
Sbjct: 47 VEKYRPNTLEDVSGHQDILATINKFVEANRLPHLLLYGP-------PGTGKTSTILALAR 99
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK-------------SSYKLI 206
A++ + VLELNASDDRGI +VR+QI FASTK + +SYKLI
Sbjct: 100 RIYGAKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSSTSTSSSTLASYKLI 159
Query: 207 ILDEADAMTNDAQNALRR------------------------------------------ 224
ILDEADAMT AQ ALRR
Sbjct: 160 ILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADI 219
Query: 225 -----------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATA---------------- 257
++ + P+ +++ LS GDMR+ LN+LQ+ +
Sbjct: 220 RVLVDIVIEKEQVNIQPEAVDSLVRLSKGDMRRALNVLQACFASSIPLPMKNAPKDQEAK 279
Query: 258 ---HADEVNEDTVYNSVGYPTKTEITNILRWLLNES 290
A+ + +T+Y+ + P ++I I+ LL S
Sbjct: 280 EKPEAEVITNETIYDCIAAPHPSDIEEIMTTLLATS 315
Score = 38.5 bits (88), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K KGLAL DIL + + RLE+P V + +++IE+RLA G SE +Q L
Sbjct: 324 INTLKANKGLALADILAALGDQLQRLEVPAQTRVTWLEGLAEIEWRLAGGGSESMQTGGL 383
Query: 516 IA 517
+
Sbjct: 384 VG 385
>gi|134083012|emb|CAK42775.1| unnamed protein product [Aspergillus niger]
Length = 342
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 108/152 (71%), Gaps = 13/152 (8%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F++ N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 63 DILATINKFVEANRLPHLLLYGPPGTGKTSTILALARRIYGAKNMRQMVLELNASDDRGI 122
Query: 352 GIVRDQIFQFASTKTMHK-------------SSYKLIILDEADAMTNDAQNALRRIIEKF 398
+VR+QI FASTK + +SYKLIILDEADAMT AQ ALRRI+EK+
Sbjct: 123 DVVREQIKTFASTKQIFSMAPSSTSTSSSTLASYKLIILDEADAMTATAQMALRRIMEKY 182
Query: 399 TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
T N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 183 TANTRFCIIANYTHKLSPALLSRCTRFRFSPL 214
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 60/81 (74%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL + I +D VIE+E+VN+ P+
Sbjct: 179 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDIVIEKEQVNIQPEA 238
Query: 61 KKAIIDLSDGDMRKVLNILQS 81
+++ LS GDMR+ LN+LQ+
Sbjct: 239 VDSLVRLSKGDMRRALNVLQA 259
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 121/276 (43%), Gaps = 95/276 (34%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+TL+++ HQDI++TI + + L L+L GT + + AL
Sbjct: 47 VEKYRPNTLEDVSGHQDILATINKFVEANRLPHLLLYGP-------PGTGKTSTILALAR 99
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK-------------SSYKLI 206
A++ + VLELNASDDRGI +VR+QI FASTK + +SYKLI
Sbjct: 100 RIYGAKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSSTSTSSSTLASYKLI 159
Query: 207 ILDEADAMTNDAQNALRR------------------------------------------ 224
ILDEADAMT AQ ALRR
Sbjct: 160 ILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADI 219
Query: 225 -----------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATA---------------- 257
++ + P+ +++ LS GDMR+ LN+LQ+ +
Sbjct: 220 RVLVDIVIEKEQVNIQPEAVDSLVRLSKGDMRRALNVLQACFASSIPLPMKNAPKDQEAK 279
Query: 258 ---HADEVNEDTVYNSVGYPTKTEITNILRWLLNES 290
A+ + +T+Y+ + P ++I I+ LL S
Sbjct: 280 EKPEAEVITNETIYDCIAAPHPSDIEEIMTTLLATS 315
>gi|449301028|gb|EMC97039.1| hypothetical protein BAUCODRAFT_147217 [Baudoinia compniacensis
UAMH 10762]
Length = 397
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 93/160 (58%), Positives = 112/160 (70%), Gaps = 11/160 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+T+LA AR++Y MVLELNASDDRGI
Sbjct: 65 DILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNRNMRQMVLELNASDDRGI 124
Query: 352 GIVRDQIFQFASTKTMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VR+QI F+STK + S +KLIILDEADAMT+ AQ ALRRI+EK+T
Sbjct: 125 EVVREQIKTFSSTKQIFAGSFDKTQQDSIANFKLIILDEADAMTSTAQMALRRIMEKYTA 184
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
N RFCII NY K+ PA+ SRCTRFRF PL + I +D
Sbjct: 185 NTRFCIIANYTHKLSPALLSRCTRFRFSPLKDADIRHLVD 224
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 104/215 (48%), Gaps = 45/215 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL + I +D VI +E VN+ PD
Sbjct: 179 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDADIRHLVDKVIVEEGVNIAPDA 238
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIF------- 96
+++ LS GDMR+ LN+LQ+ + D + ++TI+
Sbjct: 239 VDSLVSLSKGDMRRALNVLQACHASSTPLHVPGQPVKESKDVKRDLITQETIYDCIAAPH 298
Query: 97 ---------TLLVSRVEKYRPSTL------------DELVSHQDIISTIEIPESMLVDLV 135
TLL + ST+ D L + + ++ I++P V +
Sbjct: 299 PADINTILQTLLTTSNVGSCLSTINALKRAKGLALADILTAMGEQLAEIDVPAQTRVSWL 358
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLE 170
++DIEYRL+ G SE +Q LI + +E
Sbjct: 359 EGLADIEYRLSGGGSETVQTGGLIGVVRNGVSLME 393
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 78/136 (57%), Gaps = 21/136 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP++L ++ H DI++TI + + L L+L GT + + AL
Sbjct: 49 VEKYRPASLSDVSGHHDILATINKFVDSNRLPHLLLYG-------PPGTGKTSTVLALAR 101
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----------YKLIIL 208
R+ + VLELNASDDRGI +VR+QI F+STK + S +KLIIL
Sbjct: 102 RIYGNRNMRQMVLELNASDDRGIEVVREQIKTFSSTKQIFAGSFDKTQQDSIANFKLIIL 161
Query: 209 DEADAMTNDAQNALRR 224
DEADAMT+ AQ ALRR
Sbjct: 162 DEADAMTSTAQMALRR 177
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K KGLAL DILT + + +++P V + ++DIEYRL+ G SE +Q L
Sbjct: 322 INALKRAKGLALADILTAMGEQLAEIDVPAQTRVSWLEGLADIEYRLSGGGSETVQTGGL 381
Query: 516 IAAFNSARDKLE 527
I + +E
Sbjct: 382 IGVVRNGVSLME 393
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 17/80 (21%)
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTVYNS 270
+ PD +++ LS GDMR+ LN+LQ+ + D + ++T+Y+
Sbjct: 234 IAPDAVDSLVSLSKGDMRRALNVLQACHASSTPLHVPGQPVKESKDVKRDLITQETIYDC 293
Query: 271 VGYPTKTEITNILRWLLNES 290
+ P +I IL+ LL S
Sbjct: 294 IAAPHPADINTILQTLLTTS 313
>gi|68490424|ref|XP_710962.1| hypothetical protein CaO19.10723 [Candida albicans SC5314]
gi|46432227|gb|EAK91721.1| hypothetical protein CaO19.10723 [Candida albicans SC5314]
Length = 361
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 90/153 (58%), Positives = 114/153 (74%), Gaps = 9/153 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +F++ +LPHLLFYGPPGTGKT+TI+A A+++Y + M+LELNASDDRGI +VR+
Sbjct: 47 VRKFVETGKLPHLLFYGPPGTGKTSTIIALAKEIYGATNYKNMILELNASDDRGIDVVRN 106
Query: 357 QIFQFASTK---------TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII 407
QI FAST+ T + +KLIILDEADAMTN AQN+LRR+IEKFT N RFCI+
Sbjct: 107 QIKNFASTRQIFTKNTSQTASNNQFKLIILDEADAMTNVAQNSLRRVIEKFTKNCRFCIL 166
Query: 408 CNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
NY K+ PA+ SRCTRFRF P+D S I RL+
Sbjct: 167 ANYSHKLNPALISRCTRFRFTPIDISAIKDRLN 199
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 109/203 (53%), Gaps = 38/203 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFCI+ NY K+ PA+ SRCTRFRF P+D S I RL+ VI +E VN++P+
Sbjct: 154 IEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDRLNTVIIKENVNISPEA 213
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA----------HA-DEVNEDTIF------------- 96
A++ LS+GDMR+ LN+LQS A HA DE++ D I+
Sbjct: 214 IDALLKLSNGDMRRALNVLQSCKAALGDEEKEEDGHANDEIDVDMIYDCVGAPHPQDVET 273
Query: 97 ----------TLLVSRVEKYRP----STLDELVSHQDIISTIEIPESMLVDLVLKMSDIE 142
T + KY+ + +D + +I++ ++ ++++ +SDIE
Sbjct: 274 CLDSILKDDWTTAYLTLNKYKTIKGLALIDLITGFIEILNNYKLKPKTRLEILKGLSDIE 333
Query: 143 YRLAAGTSEKIQLSALIAAFNSA 165
Y ++ G ++KIQ SA+I A
Sbjct: 334 YGISKGGNDKIQTSAIIGVIKDA 356
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 90/271 (33%), Positives = 122/271 (45%), Gaps = 79/271 (29%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
L SRVEKYRP +L+E+ Q+I+ T+ V+ K+ + + GT + + AL
Sbjct: 22 LFSRVEKYRPDSLEEVKGQQEIVDTVR----KFVE-TGKLPHLLFYGPPGTGKTSTIIAL 76
Query: 159 IAAFNSARD-KLEVLELNASDDRGIGIVRDQIFQFASTK---------TMHKSSYKLIIL 208
A + K +LELNASDDRGI +VR+QI FAST+ T + +KLIIL
Sbjct: 77 AKEIYGATNYKNMILELNASDDRGIDVVRNQIKNFASTRQIFTKNTSQTASNNQFKLIIL 136
Query: 209 DEADAMTNDAQNALRR------------------------------KLPVTPDGKKAIID 238
DEADAMTN AQN+LRR + TP AI D
Sbjct: 137 DEADAMTNVAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKD 196
Query: 239 -----------------------LSDGDMRKVLNILQSAATA----------HA-DEVNE 264
LS+GDMR+ LN+LQS A HA DE++
Sbjct: 197 RLNTVIIKENVNISPEAIDALLKLSNGDMRRALNVLQSCKAALGDEEKEEDGHANDEIDV 256
Query: 265 DTVYNSVGYPTKTEITNILRWLLNESMDLCY 295
D +Y+ VG P ++ L +L + Y
Sbjct: 257 DMIYDCVGAPHPQDVETCLDSILKDDWTTAY 287
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y+ + + K KGLAL D++T +++ ++ ++++ +SDIEY ++ G ++KIQ
Sbjct: 287 YLTLNKYKTIKGLALIDLITGFIEILNNYKLKPKTRLEILKGLSDIEYGISKGGNDKIQT 346
Query: 513 SALIAAFNSA 522
SA+I A
Sbjct: 347 SAIIGVIKDA 356
>gi|115443244|ref|XP_001218429.1| activator 1 subunit 3 [Aspergillus terreus NIH2624]
gi|114188298|gb|EAU29998.1| activator 1 subunit 3 [Aspergillus terreus NIH2624]
Length = 398
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 97/161 (60%), Positives = 113/161 (70%), Gaps = 12/161 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRFI+ N LPHLL YGPPGTGKT+TILA ARK+Y MVLELNASDDRGI
Sbjct: 63 DILATINRFIEANRLPHLLLYGPPGTGKTSTILALARKIYGSKNMRQMVLELNASDDRGI 122
Query: 352 GIVRDQIFQFASTKTM------------HKSSYKLIILDEADAMTNDAQNALRRIIEKFT 399
+VR+QI FASTK + +S+KLIILDEADAMT+ AQ ALRRI+E++T
Sbjct: 123 DVVREQIKTFASTKQIFSMGPQSGSGSSSLASFKLIILDEADAMTSTAQMALRRIMERYT 182
Query: 400 TNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
N RFCII NY K+ PA+ SRCTRFRF PL I S +D
Sbjct: 183 ANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEPDIRSLVD 223
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 104/216 (48%), Gaps = 47/216 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E++T N RFCII NY K++PA+ SRCTRFRF PL I S +D V+E+E++N+ P+
Sbjct: 178 MERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEPDIRSLVDLVVEKEQINIQPEA 237
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA----------------HADEVNEDTIFTLLVSRVE 104
+++ LS GDMR+ LN+LQ+ + A+ + +TI+ + +
Sbjct: 238 VDSLVTLSKGDMRRALNVLQACHASSIPLPMKNAPKDQVRPEAEVITNETIYDCIAAPYP 297
Query: 105 KYRPSTLDELVSHQDIIST----------------------------IEIPESMLVDLVL 136
+ L++ DI S +E+P + +
Sbjct: 298 ADIQEIMTTLLTTSDITSCLNTINTLKANKGLALADILEALADQLQRLEVPPQTRITWLE 357
Query: 137 KMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVL 172
+++IE+RLA G SE +Q L+ R+ E+L
Sbjct: 358 GLAEIEWRLAGGGSETMQTGGLVGVV---RNGCELL 390
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 121/273 (44%), Gaps = 93/273 (34%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
VEKYRP+TLD++ HQDI++TI + ++ + + + L G + S ++A
Sbjct: 47 VEKYRPNTLDDVSGHQDILATI--------NRFIEANRLPHLLLYGPPGTGKTSTILALA 98
Query: 161 --AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTM------------HKSSYKLI 206
+ S + VLELNASDDRGI +VR+QI FASTK + +S+KLI
Sbjct: 99 RKIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMGPQSGSGSSSLASFKLI 158
Query: 207 ILDEADAMTNDAQNALRR------------------------------------------ 224
ILDEADAMT+ AQ ALRR
Sbjct: 159 ILDEADAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEPDI 218
Query: 225 -----------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATA---------------- 257
++ + P+ +++ LS GDMR+ LN+LQ+ +
Sbjct: 219 RSLVDLVVEKEQINIQPEAVDSLVTLSKGDMRRALNVLQACHASSIPLPMKNAPKDQVRP 278
Query: 258 HADEVNEDTVYNSVGYPTKTEITNILRWLLNES 290
A+ + +T+Y+ + P +I I+ LL S
Sbjct: 279 EAEVITNETIYDCIAAPYPADIQEIMTTLLTTS 311
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K KGLAL DIL ++ + RLE+P + + +++IE+RLA G SE +Q L
Sbjct: 320 INTLKANKGLALADILEALADQLQRLEVPPQTRITWLEGLAEIEWRLAGGGSETMQTGGL 379
Query: 516 IAAFNSA 522
+ +
Sbjct: 380 VGVVRNG 386
>gi|389625115|ref|XP_003710211.1| replication factor C subunit 3 [Magnaporthe oryzae 70-15]
gi|351649740|gb|EHA57599.1| replication factor C subunit 3 [Magnaporthe oryzae 70-15]
gi|440464833|gb|ELQ34198.1| replication factor C subunit 3 [Magnaporthe oryzae Y34]
Length = 404
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 95/164 (57%), Positives = 108/164 (65%), Gaps = 25/164 (15%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ +N+F+D N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 63 DILATVNKFVDANRLPHLLLYGPPGTGKTSTILALARRIYGADNVRQMVLELNASDDRGI 122
Query: 352 GIVRDQIFQFASTK-------------------------TMHKSSYKLIILDEADAMTND 386
+VR+QI FASTK T SYKLIILDEADAMTN
Sbjct: 123 DVVREQIKTFASTKQIFTLGSTKPAAASSSASTSNNPSATRPTPSYKLIILDEADAMTNT 182
Query: 387 AQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
AQ ALRRI+EK+T N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 183 AQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPL 226
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 44/201 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL + I +D V+E+E VN+ PD
Sbjct: 191 MEKYTANTRFCIIANYAHKLSPALLSRCTRFRFSPLKEADIRVLVDRVVEEETVNIRPDA 250
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA----------------DEVNEDTIFTLLVSRVE 104
A++ L+ GDMR+ LN+LQ+ + D + +TI+ + +
Sbjct: 251 VDALVRLARGDMRRALNVLQACHASSTPLREKGAAADDKPVVRDTITVETIYNCIAAPPP 310
Query: 105 KYRPSTLDELVSHQDIIST----------------------------IEIPESMLVDLVL 136
+ LD L++ D++S +E+ +++ +
Sbjct: 311 EAIKEILDTLLATSDVVSCLGTINALKTTRGLALADIITALSEELVKLEVKPEVMITWLD 370
Query: 137 KMSDIEYRLAAGTSEKIQLSA 157
+++IE+R+A G E +Q A
Sbjct: 371 GLAEIEHRVAGGAGEAVQTGA 391
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 78/148 (52%), Gaps = 31/148 (20%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP +L ++ HQDI++T+ + VD ++ + GT + + AL
Sbjct: 47 VEKYRPVSLADVSGHQDILATV----NKFVD-ANRLPHLLLYGPPGTGKTSTILALARRI 101
Query: 163 NSARD-KLEVLELNASDDRGIGIVRDQIFQFASTK------------------------- 196
A + + VLELNASDDRGI +VR+QI FASTK
Sbjct: 102 YGADNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGSTKPAAASSSASTSNNPSA 161
Query: 197 TMHKSSYKLIILDEADAMTNDAQNALRR 224
T SYKLIILDEADAMTN AQ ALRR
Sbjct: 162 TRPTPSYKLIILDEADAMTNTAQMALRR 189
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
I +K +GLAL DI+T +S + +LE+ +++ + +++IE+R+A G E +Q A
Sbjct: 333 INALKTTRGLALADIITALSEELVKLEVKPEVMITWLDGLAEIEHRVAGGAGEAVQTGA 391
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 16/79 (20%)
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHA----------------DEVNEDTVYNSV 271
+ PD A++ L+ GDMR+ LN+LQ+ + D + +T+YN +
Sbjct: 246 IRPDAVDALVRLARGDMRRALNVLQACHASSTPLREKGAAADDKPVVRDTITVETIYNCI 305
Query: 272 GYPTKTEITNILRWLLNES 290
P I IL LL S
Sbjct: 306 AAPPPEAIKEILDTLLATS 324
>gi|451854539|gb|EMD67832.1| hypothetical protein COCSADRAFT_112005 [Cochliobolus sativus
ND90Pr]
Length = 394
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 90/149 (60%), Positives = 109/149 (73%), Gaps = 10/149 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+T+LA AR++Y MVLELNASDDRGI
Sbjct: 63 DIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASDDRGI 122
Query: 352 GIVRDQIFQFASTKTMHK----------SSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+VR+QI F+STK + +++KLIILDEADAMT+ AQ ALRRI+EK+T N
Sbjct: 123 EVVREQIKTFSSTKQIFSAAPKTGDSSLATFKLIILDEADAMTSTAQMALRRIMEKYTAN 182
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 183 TRFCIIANYTHKLSPALLSRCTRFRFSPL 211
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 104/215 (48%), Gaps = 45/215 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VIE+EKVN+T D
Sbjct: 176 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRHLVDKVIEEEKVNITQDA 235
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIFTLLVSRV 103
+++ LS GDMR+ LN+LQ+ + D++ + TI+ + +
Sbjct: 236 TDSLVTLSKGDMRRALNVLQACHASSTPLQPPGKPAVDPSSIVRDQITQTTIYDCIAAPH 295
Query: 104 EKYRPSTLDELVSHQDIISTI----------------------------EIPESMLVDLV 135
++ L+S D+ + ++P ++V +
Sbjct: 296 PSDIKYIIETLLSKNDMTECLRTINNLKTLKGLALADILTAISEELVANDVPPQVMVTWM 355
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLE 170
++DIEYRL+ G SE IQ A I + + LE
Sbjct: 356 SGLADIEYRLSGGGSEAIQTGAAIGVVRTGVELLE 390
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 126/278 (45%), Gaps = 91/278 (32%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP++LD++ H+DII+TI + + L L+L GT + + AL
Sbjct: 47 VEKYRPASLDDVEGHKDIIATINKFVDSNRLPHLLLYG-------PPGTGKTSTVLALAR 99
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK----------SSYKLIILD 209
++ + VLELNASDDRGI +VR+QI F+STK + +++KLIILD
Sbjct: 100 RIYGNKNMRQMVLELNASDDRGIEVVREQIKTFSSTKQIFSAAPKTGDSSLATFKLIILD 159
Query: 210 EADAMTNDAQNALRR--------------------------------------------- 224
EADAMT+ AQ ALRR
Sbjct: 160 EADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRHL 219
Query: 225 --------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHA----------------- 259
K+ +T D +++ LS GDMR+ LN+LQ+ +
Sbjct: 220 VDKVIEEEKVNITQDATDSLVTLSKGDMRRALNVLQACHASSTPLQPPGKPAVDPSSIVR 279
Query: 260 DEVNEDTVYNSVGYPTKTEITNILRWLLNES-MDLCYK 296
D++ + T+Y+ + P ++I I+ LL+++ M C +
Sbjct: 280 DQITQTTIYDCIAAPHPSDIKYIIETLLSKNDMTECLR 317
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K KGLAL DILT IS + ++P ++V + ++DIEYRL+ G SE IQ A
Sbjct: 319 INNLKTLKGLALADILTAISEELVANDVPPQVMVTWMSGLADIEYRLSGGGSEAIQTGAA 378
Query: 516 IAAFNSARDKLE 527
I + + LE
Sbjct: 379 IGVVRTGVELLE 390
>gi|330922359|ref|XP_003299806.1| hypothetical protein PTT_10878 [Pyrenophora teres f. teres 0-1]
gi|311326367|gb|EFQ92093.1| hypothetical protein PTT_10878 [Pyrenophora teres f. teres 0-1]
Length = 393
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 93/159 (58%), Positives = 112/159 (70%), Gaps = 10/159 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+T+LA AR++Y MVLELNASDDRGI
Sbjct: 62 DIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTKTMHKS----------SYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+VR+QI F+STK + S ++KLIILDEADAMT AQ ALRRI+EK+T N
Sbjct: 122 DVVREQIKTFSSTKQIFASAPKTGDSSLATFKLIILDEADAMTATAQMALRRIMEKYTAN 181
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
RFCII NY K+ PA+ SRCTRFRF PL I + +D
Sbjct: 182 TRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVD 220
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 45/215 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I + +D VIE EKVN+T D
Sbjct: 175 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKVIEDEKVNITQDA 234
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIFTLLVSRV 103
+++ LS GDMR+ LN+LQ+ + D++ + TI+ + +
Sbjct: 235 TGSLVTLSKGDMRRALNVLQACHASSTPLQPPGKPAVDPNTIVRDQITQTTIYDCIAAPH 294
Query: 104 EKYRPSTLDELVSHQDI----------------------------ISTIEIPESMLVDLV 135
L+ L+S D+ + T ++P ++V +
Sbjct: 295 PSDIKYILETLLSKNDMTECLRTVNNLKIMKGLALADILTAVSEELVTNDVPPQVMVTWM 354
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLE 170
++DIEYRL+ G SE IQ A I + + LE
Sbjct: 355 SGLADIEYRLSGGGSETIQTGAAIGVVRTGVELLE 389
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 125/278 (44%), Gaps = 91/278 (32%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP++LD++ H+DII+TI + + L L+L GT + + AL
Sbjct: 46 VEKYRPNSLDDVEGHKDIIATINKFVDSNRLPHLLLYG-------PPGTGKTSTVLALAR 98
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKS----------SYKLIILD 209
++ + VLELNASDDRGI +VR+QI F+STK + S ++KLIILD
Sbjct: 99 RIYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFASAPKTGDSSLATFKLIILD 158
Query: 210 EADAMTNDAQNALRR--------------------------------------------- 224
EADAMT AQ ALRR
Sbjct: 159 EADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNL 218
Query: 225 --------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHA----------------- 259
K+ +T D +++ LS GDMR+ LN+LQ+ +
Sbjct: 219 VDKVIEDEKVNITQDATGSLVTLSKGDMRRALNVLQACHASSTPLQPPGKPAVDPNTIVR 278
Query: 260 DEVNEDTVYNSVGYPTKTEITNILRWLLNES-MDLCYK 296
D++ + T+Y+ + P ++I IL LL+++ M C +
Sbjct: 279 DQITQTTIYDCIAAPHPSDIKYILETLLSKNDMTECLR 316
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+ +KI KGLAL DILT +S + ++P ++V + ++DIEYRL+ G SE IQ A
Sbjct: 318 VNNLKIMKGLALADILTAVSEELVTNDVPPQVMVTWMSGLADIEYRLSGGGSETIQTGAA 377
Query: 516 IAAFNSARDKLE 527
I + + LE
Sbjct: 378 IGVVRTGVELLE 389
>gi|241955893|ref|XP_002420667.1| AAA ATPase family member, putative; replication factor C (RF-C)
subunit, putative [Candida dubliniensis CD36]
gi|223644009|emb|CAX41749.1| AAA ATPase family member, putative [Candida dubliniensis CD36]
Length = 339
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 89/151 (58%), Positives = 115/151 (76%), Gaps = 7/151 (4%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +F++ +LPHLLFYGPPGTGKT+TI+A A+++Y + M+LELNASDDRGI +VR+
Sbjct: 33 VRKFVETRKLPHLLFYGPPGTGKTSTIIALAKEIYGSINYKDMILELNASDDRGIDVVRN 92
Query: 357 QIFQFASTK-------TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
QI FAST+ +++ +KLIILDEADAMTN AQN+LRR+IEKFT N RFCI+ N
Sbjct: 93 QIKNFASTRQIFTKNNSINNDQFKLIILDEADAMTNIAQNSLRRVIEKFTKNCRFCILAN 152
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
Y K+ PA+ SRCTRFRF P+D S I RL+
Sbjct: 153 YSHKLNPALISRCTRFRFTPIDISAIKDRLN 183
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 107/196 (54%), Gaps = 31/196 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFCI+ NY K+ PA+ SRCTRFRF P+D S I RL+ VI +E VN++ D
Sbjct: 138 IEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDRLNIVIIKENVNISSDA 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD----EVNEDTIFTLLVS--------------- 101
A++ LS+GDMR+ LN+LQS A D E+N D I+ + +
Sbjct: 198 IDALLKLSNGDMRRALNVLQSCKAALGDDENIEINVDMIYDCIGAPYPQDIETCLDSILK 257
Query: 102 --------RVEKYRP----STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGT 149
+ KY+ + +D + +I++ ++ ++++ +SDIEY ++ G
Sbjct: 258 DDWTTAYLTLNKYKIIKGLALIDLITGFIEILNNYKLKSKTRLEILKGLSDIEYGISKGG 317
Query: 150 SEKIQLSALIAAFNSA 165
++KIQ SA+I A
Sbjct: 318 NDKIQTSAIIGVIKDA 333
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 118/258 (45%), Gaps = 70/258 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP L+E+ Q+I+ T+ V+ K+ + + GT + + AL
Sbjct: 12 VEKYRPDNLEEVKGQQEIVDTVR----KFVE-TRKLPHLLFYGPPGTGKTSTIIALAKEI 66
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-------TMHKSSYKLIILDEADAM 214
+ S K +LELNASDDRGI +VR+QI FAST+ +++ +KLIILDEADAM
Sbjct: 67 YGSINYKDMILELNASDDRGIDVVRNQIKNFASTRQIFTKNNSINNDQFKLIILDEADAM 126
Query: 215 TNDAQNALRR------------------------------KLPVTP-------------- 230
TN AQN+LRR + TP
Sbjct: 127 TNIAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDRLNIVI 186
Query: 231 ---------DGKKAIIDLSDGDMRKVLNILQSAATAHAD----EVNEDTVYNSVGYPTKT 277
D A++ LS+GDMR+ LN+LQS A D E+N D +Y+ +G P
Sbjct: 187 IKENVNISSDAIDALLKLSNGDMRRALNVLQSCKAALGDDENIEINVDMIYDCIGAPYPQ 246
Query: 278 EITNILRWLLNESMDLCY 295
+I L +L + Y
Sbjct: 247 DIETCLDSILKDDWTTAY 264
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y+ + + KI KGLAL D++T +++ ++ ++++ +SDIEY ++ G ++KIQ
Sbjct: 264 YLTLNKYKIIKGLALIDLITGFIEILNNYKLKSKTRLEILKGLSDIEYGISKGGNDKIQT 323
Query: 513 SALIAAFNSA 522
SA+I A
Sbjct: 324 SAIIGVIKDA 333
>gi|363751222|ref|XP_003645828.1| hypothetical protein Ecym_3534 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889462|gb|AET39011.1| Hypothetical protein Ecym_3534 [Eremothecium cymbalariae
DBVPG#7215]
Length = 332
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 89/139 (64%), Positives = 108/139 (77%), Gaps = 1/139 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +F E LPHLLFYGPPGTGKT+TI A AR++Y K + MVLELNASDDRGI +VR+
Sbjct: 35 VRKFAQEGRLPHLLFYGPPGTGKTSTISALAREIYGK-NYRKMVLELNASDDRGIDVVRN 93
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI +FAST+ + +KLIILDEADAMT+ AQNALRRIIE+FT N RFCI+ NY K+ P
Sbjct: 94 QIKEFASTRQIFSKGFKLIILDEADAMTSAAQNALRRIIERFTKNTRFCILANYAHKLTP 153
Query: 417 AIQSRCTRFRFGPLDSSLI 435
A+ SRCTRFRF P+ + I
Sbjct: 154 ALLSRCTRFRFQPVPAQSI 172
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 119/257 (46%), Gaps = 67/257 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP LDE+ ++ T+ E L L+ + GT + +SAL
Sbjct: 14 IEKYRPERLDEVYGQTRVVETVRKFAQEGRLPHLL-------FYGPPGTGKTSTISALAR 66
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ VLELNASDDRGI +VR+QI +FAST+ + +KLIILDEADAMT+ AQN
Sbjct: 67 EIYGKNYRKMVLELNASDDRGIDVVRNQIKEFASTRQIFSKGFKLIILDEADAMTSAAQN 126
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR L
Sbjct: 127 ALRRIIERFTKNTRFCILANYAHKLTPALLSRCTRFRFQPVPAQSIERCVLNVMAHEHLT 186
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTVYNSVGYPTKTEITNIL 283
+ D ++A++ L++GDMRK LN+LQ++ D+V EDT+Y +G P +I +++
Sbjct: 187 LAEDARRALLRLANGDMRKALNVLQASKATLDNPEKDQVTEDTIYECIGAPHPKDIESLM 246
Query: 284 RWLLNESMDLC-YKINR 299
+L + Y +N+
Sbjct: 247 ESILKDDWTTASYTVNK 263
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 105/192 (54%), Gaps = 31/192 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE+FT N RFCI+ NY K+TPA+ SRCTRFRF P+ + I + V+ E + + D
Sbjct: 132 IERFTKNTRFCILANYAHKLTPALLSRCTRFRFQPVPAQSIERCVLNVMAHEHLTLAEDA 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTIFTLLVSRVEKYRPSTLDEL-- 114
++A++ L++GDMRK LN+LQ++ D+V EDTI+ + + K S ++ +
Sbjct: 192 RRALLRLANGDMRKALNVLQASKATLDNPEKDQVTEDTIYECIGAPHPKDIESLMESILK 251
Query: 115 ------------VSHQDIISTIEIPESML-------------VDLVLKMSDIEYRLAAGT 149
+ ++ I++ E + ++L+ K++DIEY ++ G
Sbjct: 252 DDWTTASYTVNKIKTNHGLALIDMIEGFVELLEEYELKESTRIELLCKLADIEYAISKGG 311
Query: 150 SEKIQLSALIAA 161
++KIQ SA IAA
Sbjct: 312 TDKIQSSATIAA 323
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+ +IK GLAL D++ L+ E+ ES ++L+ K++DIEY ++ G ++KIQ SA
Sbjct: 261 VNKIKTNHGLALIDMIEGFVELLEEYELKESTRIELLCKLADIEYAISKGGTDKIQSSAT 320
Query: 516 IAA 518
IAA
Sbjct: 321 IAA 323
>gi|451999620|gb|EMD92082.1| hypothetical protein COCHEDRAFT_1193657 [Cochliobolus
heterostrophus C5]
Length = 392
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 89/149 (59%), Positives = 109/149 (73%), Gaps = 10/149 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+T+LA AR++Y MVLELNASDDRGI
Sbjct: 61 DIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASDDRGI 120
Query: 352 GIVRDQIFQFASTKTMHK----------SSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+VR+QI F+STK + +++KLI+LDEADAMT+ AQ ALRRI+EK+T N
Sbjct: 121 EVVREQIKTFSSTKQIFSAAPKAGDSSLATFKLIVLDEADAMTSTAQMALRRIMEKYTAN 180
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 181 TRFCIIANYTHKLSPALLSRCTRFRFSPL 209
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 104/215 (48%), Gaps = 45/215 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VIE+EKVN+T D
Sbjct: 174 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRHLVDKVIEEEKVNITQDA 233
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIFTLLVSRV 103
+++ LS GDMR+ LN+LQ+ + D++ + TI+ + +
Sbjct: 234 TDSLVTLSKGDMRRALNVLQACHASSTPLQPPGKPAVDPSSIVRDQITQTTIYDCIAAPH 293
Query: 104 EKYRPSTLDELVSHQDIISTI----------------------------EIPESMLVDLV 135
++ L+S D+ + ++P ++V +
Sbjct: 294 PSDIKYIIETLLSKNDMTECLRTINNLKTLKGLALADILTAISEELVANDVPPQVMVTWM 353
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLE 170
++DIEYRL+ G SE IQ A I + + LE
Sbjct: 354 SGLADIEYRLSGGGSEAIQTGAAIGVVRTGVELLE 388
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 126/278 (45%), Gaps = 91/278 (32%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP++LD++ H+DII+TI + + L L+L GT + + AL
Sbjct: 45 VEKYRPASLDDVEGHKDIIATINKFVDSNRLPHLLLYG-------PPGTGKTSTVLALAR 97
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK----------SSYKLIILD 209
++ + VLELNASDDRGI +VR+QI F+STK + +++KLI+LD
Sbjct: 98 RIYGNKNMRQMVLELNASDDRGIEVVREQIKTFSSTKQIFSAAPKAGDSSLATFKLIVLD 157
Query: 210 EADAMTNDAQNALRR--------------------------------------------- 224
EADAMT+ AQ ALRR
Sbjct: 158 EADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRHL 217
Query: 225 --------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHA----------------- 259
K+ +T D +++ LS GDMR+ LN+LQ+ +
Sbjct: 218 VDKVIEEEKVNITQDATDSLVTLSKGDMRRALNVLQACHASSTPLQPPGKPAVDPSSIVR 277
Query: 260 DEVNEDTVYNSVGYPTKTEITNILRWLLNES-MDLCYK 296
D++ + T+Y+ + P ++I I+ LL+++ M C +
Sbjct: 278 DQITQTTIYDCIAAPHPSDIKYIIETLLSKNDMTECLR 315
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K KGLAL DILT IS + ++P ++V + ++DIEYRL+ G SE IQ A
Sbjct: 317 INNLKTLKGLALADILTAISEELVANDVPPQVMVTWMSGLADIEYRLSGGGSEAIQTGAA 376
Query: 516 IAAFNSARDKLE 527
I + + LE
Sbjct: 377 IGVVRTGVELLE 388
>gi|66812244|ref|XP_640301.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74855117|sp|Q54ST4.1|RFC5_DICDI RecName: Full=Probable replication factor C subunit 5; AltName:
Full=Activator 1 subunit 5
gi|60468315|gb|EAL66323.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 93/141 (65%), Positives = 109/141 (77%), Gaps = 3/141 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I + ID N LPHLLFYGPPGTGKT+TI A ARKLY ++ MVLELNASDDRGI
Sbjct: 43 DITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYGD-NYSRMVLELNASDDRGI 101
Query: 352 GIVRDQIFQFASTKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+VR+QI FAS+ ++ YKLIILDEAD+MTN AQ ALRR+IEK+T RFCI+CN
Sbjct: 102 DVVREQIKTFASSMFFFNTTVPYKLIILDEADSMTNIAQTALRRVIEKYTKTTRFCIVCN 161
Query: 410 YLSKIPPAIQSRCTRFRFGPL 430
Y+ KI PA+QSRCTRFRF PL
Sbjct: 162 YVIKIIPALQSRCTRFRFSPL 182
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 109/195 (55%), Gaps = 28/195 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T RFCI+CNY+ KI PA+QSRCTRFRF PL + RL +IE+E V V
Sbjct: 147 IEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKENVKVDSKA 206
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTIFTLL-------------------- 99
A+++L GDMRK LNILQS + + D + E+ I+
Sbjct: 207 MNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPMPSDIELMVDWLLNSDY 266
Query: 100 ------VSRVEKYRPSTLDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+S ++K + +L+++++ Q + I++ +L L+ +SDIEY L+ G+SEK
Sbjct: 267 EEAFQNISDLKKKKGLSLNDIIATLQKFVVQIDLDNVILCKLLSHLSDIEYNLSIGSSEK 326
Query: 153 IQLSALIAAFNSARD 167
+QL +L+ F +RD
Sbjct: 327 LQLGSLVGCFQLSRD 341
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 116/242 (47%), Gaps = 61/242 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP LD+L++H+DI TI + L+D + + + GT + + A+
Sbjct: 27 VEKYRPKNLDDLIAHEDITQTI----TKLIDNN-TLPHLLFYGPPGTGKTSTIQAIARKL 81
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS--YKLIILDEADAMTNDAQN 220
VLELNASDDRGI +VR+QI FAS+ ++ YKLIILDEAD+MTN AQ
Sbjct: 82 YGDNYSRMVLELNASDDRGIDVVREQIKTFASSMFFFNTTVPYKLIILDEADSMTNIAQT 141
Query: 221 ALRR-----------------------------------KLPVTP--------------- 230
ALRR LP P
Sbjct: 142 ALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKENVK 201
Query: 231 -DGK--KAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTVYNSVGYPTKTEITNILRWL 286
D K A+++L GDMRK LNILQS + + D + E+ +Y GYP ++I ++ WL
Sbjct: 202 VDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPMPSDIELMVDWL 261
Query: 287 LN 288
LN
Sbjct: 262 LN 263
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 63/107 (58%), Gaps = 12/107 (11%)
Query: 421 RCTRFRFGPLDSSLIMSRL---DYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLL 477
+CT + P D L++ L DY++ +F NI ++K +KGL+L DI+ +
Sbjct: 244 KCTGYPM-PSDIELMVDWLLNSDYEE-AFQNI-------SDLKKKKGLSLNDIIATLQKF 294
Query: 478 VHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
V ++++ +L L+ +SDIEY L+ G+SEK+QL +L+ F +RD
Sbjct: 295 VVQIDLDNVILCKLLSHLSDIEYNLSIGSSEKLQLGSLVGCFQLSRD 341
>gi|448113261|ref|XP_004202306.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
gi|359465295|emb|CCE89000.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
Length = 331
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 112/149 (75%), Gaps = 1/149 (0%)
Query: 287 LNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNAS 346
+N D+ + +F+ E +LPHLLFYGPPGTGKT+TI A A+++Y + + MVLELNAS
Sbjct: 24 VNGQNDIVSTVRKFVHEGKLPHLLFYGPPGTGKTSTITALAKEIYG-SNYRNMVLELNAS 82
Query: 347 DDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
DDRGI +VR+QI +FAST + +KLIILDEADAMT+ AQN+LRRIIEK+T N RFCI
Sbjct: 83 DDRGIDVVRNQIKEFASTMQIFSKGFKLIILDEADAMTSTAQNSLRRIIEKYTKNTRFCI 142
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLI 435
+ NY K+ PA+ SRCTRFRF P+ +
Sbjct: 143 LANYAHKLNPALVSRCTRFRFSPISQEAV 171
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 118/251 (47%), Gaps = 65/251 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS+LDE+ DI+ST+ + E L L+ + GT + ++AL
Sbjct: 13 VEKYRPSSLDEVNGQNDIVSTVRKFVHEGKLPHLL-------FYGPPGTGKTSTITALAK 65
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ + VLELNASDDRGI +VR+QI +FAST + +KLIILDEADAMT+ AQN
Sbjct: 66 EIYGSNYRNMVLELNASDDRGIDVVRNQIKEFASTMQIFSKGFKLIILDEADAMTSTAQN 125
Query: 221 ALRR-----------------------------------------------------KLP 227
+LRR +L
Sbjct: 126 SLRRIIEKYTKNTRFCILANYAHKLNPALVSRCTRFRFSPISQEAVNTTIATVITKEQLK 185
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATA---HADEVNEDTVYNSVGYPTKTEITNILR 284
++ + +++ L+ GDMRK LN+LQ+ + DE++ D +YN +G +I +L
Sbjct: 186 ISSEAIESLCALARGDMRKALNVLQACKASLQDDNDEIDTDMIYNCIGAAHPKDIEAVLD 245
Query: 285 WLLNESMDLCY 295
+L + Y
Sbjct: 246 SILQDEWTSSY 256
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 103/195 (52%), Gaps = 30/195 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY K+ PA+ SRCTRFRF P+ + + + VI +E++ ++ +
Sbjct: 131 IEKYTKNTRFCILANYAHKLNPALVSRCTRFRFSPISQEAVNTTIATVITKEQLKISSEA 190
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA---HADEVNEDTIFTLLVSRVEKYRPSTLDELVSH 117
+++ L+ GDMRK LN+LQ+ + DE++ D I+ + + K + LD ++
Sbjct: 191 IESLCALARGDMRKALNVLQACKASLQDDNDEIDTDMIYNCIGAAHPKDIEAVLDSILQD 250
Query: 118 Q---------------------------DIISTIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+ I++ E+ + ++++ +SDIEY ++ +
Sbjct: 251 EWTSSYNTISICKREKGLALIDLLSGFVSILNKYELKPATRIEILRGLSDIEYAISKAGN 310
Query: 151 EKIQLSALIAAFNSA 165
+KIQ SA+IA SA
Sbjct: 311 DKIQTSAVIAVIKSA 325
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I K EKGLAL D+L+ ++++ E+ + ++++ +SDIEY ++ ++KIQ
Sbjct: 256 YNTISICKREKGLALIDLLSGFVSILNKYELKPATRIEILRGLSDIEYAISKAGNDKIQT 315
Query: 513 SALIAAFNSA 522
SA+IA SA
Sbjct: 316 SAVIAVIKSA 325
>gi|323454913|gb|EGB10782.1| hypothetical protein AURANDRAFT_71065 [Aureococcus anophagefferens]
Length = 747
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 89/148 (60%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + R I+ ++LPH L YGPPGTGKT+TILA A+ +Y A + +M LELNASDDRGI
Sbjct: 444 DIISVLRRLIEADKLPHTLLYGPPGTGKTSTILAAAKDMY-GAGYKSMTLELNASDDRGI 502
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRDQI +FA T+ + KLIILDEAD MT DAQ ALRR+IEK+T N RFC+ICNY
Sbjct: 503 DVVRDQIKEFAGTRRLFSKGIKLIILDEADMMTKDAQFALRRVIEKYTANARFCLICNYA 562
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+KI PA+QSRCT+FRF PL I R+
Sbjct: 563 NKIIPALQSRCTKFRFAPLAPDQIAGRV 590
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 112/194 (57%), Gaps = 29/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFC+ICNY +KI PA+QSRCT+FRF PL I R+ ++ +E V +
Sbjct: 546 IEKYTANARFCLICNYANKIIPALQSRCTKFRFAPLAPDQIAGRVADIVRRENVAIGTKA 605
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF----------------TLLVSRVE 104
A+++L GDMR+VLN+LQ+AA A+ EV +++F +LL +
Sbjct: 606 TDALLELGKGDMRRVLNVLQAAAVAYPGEVTYESLFLVTGNPLPDHVDAIFASLLNDTFD 665
Query: 105 KYRPSTLDELVSHQ-----DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEK 152
R + L +L Q D+++ I ++P + ++ K++DIEYR A T+ +
Sbjct: 666 AAR-TLLGDLCKTQGYALPDLLTRINAKVVAAKLPNAAKAHVLTKLADIEYRCAFATTTE 724
Query: 153 IQLSALIAAFNSAR 166
+QLS+L++AF AR
Sbjct: 725 LQLSSLVSAFVVAR 738
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 121/246 (49%), Gaps = 64/246 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRPS+LDELV+H+DIIS + +++ + + L G + S ++AA
Sbjct: 428 VEKYRPSSLDELVAHKDIISVLR--------RLIEADKLPHTLLYGPPGTGKTSTILAAA 479
Query: 163 N---SARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
A K LELNASDDRGI +VRDQI +FA T+ + KLIILDEAD MT DAQ
Sbjct: 480 KDMYGAGYKSMTLELNASDDRGIDVVRDQIKEFAGTRRLFSKGIKLIILDEADMMTKDAQ 539
Query: 220 NALRRKL---------------------------------PVTPD--------------- 231
ALRR + P+ PD
Sbjct: 540 FALRRVIEKYTANARFCLICNYANKIIPALQSRCTKFRFAPLAPDQIAGRVADIVRRENV 599
Query: 232 --GKK---AIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
G K A+++L GDMR+VLN+LQ+AA A+ EV ++++ G P + I L
Sbjct: 600 AIGTKATDALLELGKGDMRRVLNVLQAAAVAYPGEVTYESLFLVTGNPLPDHVDAIFASL 659
Query: 287 LNESMD 292
LN++ D
Sbjct: 660 LNDTFD 665
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%)
Query: 463 KGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
+G AL D+LT I+ V ++P + ++ K++DIEYR A T+ ++QLS+L++AF A
Sbjct: 678 QGYALPDLLTRINAKVVAAKLPNAAKAHVLTKLADIEYRCAFATTTELQLSSLVSAFVVA 737
Query: 523 RDKLEAP 529
R AP
Sbjct: 738 RGLAPAP 744
>gi|425772715|gb|EKV11110.1| hypothetical protein PDIG_52530 [Penicillium digitatum PHI26]
gi|425775221|gb|EKV13502.1| hypothetical protein PDIP_47760 [Penicillium digitatum Pd1]
Length = 393
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 109/150 (72%), Gaps = 11/150 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRF++ N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 60 DILATINRFVETNRLPHLLLYGPPGTGKTSTILALARRIYGTKNMRQMVLELNASDDRGI 119
Query: 352 GIVRDQIFQFASTKTMHK-----------SSYKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VR+QI FASTK + + +KLIILDEADAMT+ AQ ALRRI+E++T+
Sbjct: 120 DVVREQIKTFASTKQIFNMAPQGTAGSPLAGFKLIILDEADAMTSTAQMALRRIMERYTS 179
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFC+I NY K+ PA+ SRCTRFRF PL
Sbjct: 180 NTRFCVIANYTHKLSPALLSRCTRFRFSPL 209
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 108/225 (48%), Gaps = 51/225 (22%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E++T+N RFC+I NY K++PA+ SRCTRFRF PL I + +D VIE E V + PD
Sbjct: 174 MERYTSNTRFCVIANYTHKLSPALLSRCTRFRFSPLKEVDIRTLVDKVIENEGVRMQPDA 233
Query: 61 KKAIIDLSDGDMRKVLNILQSA--------------------------------ATAHAD 88
+++ LS GDMR+ LN+LQ+ A H
Sbjct: 234 VDSLVTLSKGDMRRALNVLQACFASSIPLPMRDAPKAPRPKPETVTNATIYDCIAAPHPS 293
Query: 89 EVNE--DTIF-----TLLVSRVEKYRPST----LDELVSHQDIISTIEIPESMLVDLVLK 137
++ E TI T ++ V+ + + D L + D + +E+P + +
Sbjct: 294 DIQEIMTTILSTSDVTSCLNTVQTLKTTKGLALADILSALADQLQQLEVPAQTRITWLEG 353
Query: 138 MSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGI 182
+++IE+RLA G SE IQ L+ R+ E++ D+G+
Sbjct: 354 LAEIEWRLAGGGSEAIQTGGLVGVV---RNGCELMS-----DKGV 390
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 81/137 (59%), Gaps = 23/137 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRPS+LD++ HQDI++TI + ++ + + + L G + S ++A
Sbjct: 44 VEKYRPSSLDDVSGHQDILATI--------NRFVETNRLPHLLLYGPPGTGKTSTILALA 95
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-----------SSYKLII 207
+ + + VLELNASDDRGI +VR+QI FASTK + + +KLII
Sbjct: 96 RRIYGTKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFNMAPQGTAGSPLAGFKLII 155
Query: 208 LDEADAMTNDAQNALRR 224
LDEADAMT+ AQ ALRR
Sbjct: 156 LDEADAMTSTAQMALRR 172
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+Q +K KGLAL DIL+ ++ + +LE+P + + +++IE+RLA G SE IQ L
Sbjct: 315 VQTLKTTKGLALADILSALADQLQQLEVPAQTRITWLEGLAEIEWRLAGGGSEAIQTGGL 374
Query: 516 IA 517
+
Sbjct: 375 VG 376
>gi|169626367|ref|XP_001806584.1| hypothetical protein SNOG_16470 [Phaeosphaeria nodorum SN15]
gi|111055048|gb|EAT76168.1| hypothetical protein SNOG_16470 [Phaeosphaeria nodorum SN15]
Length = 393
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/159 (57%), Positives = 112/159 (70%), Gaps = 10/159 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+T+LA AR++Y MVLELNASDDRGI
Sbjct: 62 DIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTKTMHK----------SSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+VR+QI F+STK + +++KLIILDEADAMT AQ ALRRI+EK+T N
Sbjct: 122 DVVREQIKTFSSTKQIFSAAPKAGDSALATFKLIILDEADAMTATAQMALRRIMEKYTAN 181
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
RFCII NY K+ PA+ SRCTRFRF PL I + +D
Sbjct: 182 TRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVD 220
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 106/216 (49%), Gaps = 45/216 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I + +D VIE EKVN+T D
Sbjct: 175 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKVIEDEKVNITQDA 234
Query: 61 KKAIIDLSDGDMRKVLNILQSAA-----------------TAHADEVNEDTIFTLLVSRV 103
+++ LS GDMR+ LN+LQ+ T DE+ + TI+ + +
Sbjct: 235 ASSLVTLSKGDMRRALNVLQACHASSTPLQPPGKPAPDPNTIERDEITQTTIYDCIAAPH 294
Query: 104 EKYRPSTLDELVSHQDI----------------------------ISTIEIPESMLVDLV 135
L+ L+S QD+ + T ++P ++V +
Sbjct: 295 PSDIKFILETLLSTQDMTQCLRTVNNLKTMKGLALADILTAVSEELVTNDVPPQVMVTWM 354
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEV 171
++DIEYRL+ G SE IQ A I + + LE
Sbjct: 355 SGLADIEYRLSGGGSEAIQTGAAIGIVRTGVELLET 390
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 124/278 (44%), Gaps = 91/278 (32%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP++LD++ H+DII+TI + + L L+L GT + + AL
Sbjct: 46 VEKYRPTSLDDVEGHKDIIATINKFVDSNRLPHLLLYGP-------PGTGKTSTVLALAR 98
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK----------SSYKLIILD 209
++ + VLELNASDDRGI +VR+QI F+STK + +++KLIILD
Sbjct: 99 RIYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFSAAPKAGDSALATFKLIILD 158
Query: 210 EADAMTNDAQNALRR--------------------------------------------- 224
EADAMT AQ ALRR
Sbjct: 159 EADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNL 218
Query: 225 --------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAA-----------------TAHA 259
K+ +T D +++ LS GDMR+ LN+LQ+ T
Sbjct: 219 VDKVIEDEKVNITQDAASSLVTLSKGDMRRALNVLQACHASSTPLQPPGKPAPDPNTIER 278
Query: 260 DEVNEDTVYNSVGYPTKTEITNILRWLLN-ESMDLCYK 296
DE+ + T+Y+ + P ++I IL LL+ + M C +
Sbjct: 279 DEITQTTIYDCIAAPHPSDIKFILETLLSTQDMTQCLR 316
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+ +K KGLAL DILT +S + ++P ++V + ++DIEYRL+ G SE IQ A
Sbjct: 318 VNNLKTMKGLALADILTAVSEELVTNDVPPQVMVTWMSGLADIEYRLSGGGSEAIQTGAA 377
Query: 516 IAAFNSARDKLE 527
I + + LE
Sbjct: 378 IGIVRTGVELLE 389
>gi|70985298|ref|XP_748155.1| DNA replication factor C subunit Rfc3 [Aspergillus fumigatus Af293]
gi|66845783|gb|EAL86117.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
fumigatus Af293]
gi|159125922|gb|EDP51038.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
fumigatus A1163]
Length = 396
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 128/211 (60%), Gaps = 25/211 (11%)
Query: 255 ATAHADEVNEDTVYNSVGYPT---KTEITNILRWL----------LNESMDLCYKINRFI 301
A A + N D+ PT E + L W+ ++ D+ IN+FI
Sbjct: 14 APKSAIQFNSDSASKGAKRPTADLPVEAQDNLPWVEKYRPNTLDDVSGHQDILATINKFI 73
Query: 302 DENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQF 361
+ N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI +VR+QI F
Sbjct: 74 EANRLPHLLLYGPPGTGKTSTILALARRIYGSNNMRQMVLELNASDDRGIDVVREQIKTF 133
Query: 362 ASTKTM------------HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
ASTK + +S+KLIILDEADAMT+ AQ ALRRI+E++T N RFCII N
Sbjct: 134 ASTKQIFSMAAPSASSGSSLASFKLIILDEADAMTSTAQMALRRIMERYTANTRFCIIAN 193
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
Y K+ PA+ SRCTRFRF PL I S +D
Sbjct: 194 YTHKLSPALLSRCTRFRFSPLKEQDIRSLVD 224
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 55/224 (24%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E++T N RFCII NY K++PA+ SRCTRFRF PL I S +D VIE+E++ + P+
Sbjct: 179 MERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVDQVIEKEQIRIQPEA 238
Query: 61 KKAIIDLSDGDMRKVLNILQSA---------ATAHADE-------VNEDTIFTLLVSRVE 104
+++ LS GDMR+ LN+LQ+ A DE + +TI+ + +
Sbjct: 239 VSSLVRLSKGDMRRALNVLQACHASSRPLPMKNATNDEPQSEPEIITNETIYDCIAA--- 295
Query: 105 KYRPSTLDE----LVSHQDIIST----------------------------IEIPESMLV 132
PS + E L+S DI S +E+P +
Sbjct: 296 -PHPSDIQEIMTTLLSTSDITSCLNTLNTLKANKGLALADILSALAEQLQQLEVPPQTRI 354
Query: 133 DLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNA 176
+ ++DIE+RL+AG SE +Q ++ R+ E+++ A
Sbjct: 355 TWLEGLADIEFRLSAGGSETMQTGGMVGVI---RNGCELMDAKA 395
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 122/271 (45%), Gaps = 89/271 (32%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+TLD++ HQDI++TI I + L L+L TS + L+ I
Sbjct: 48 VEKYRPNTLDDVSGHQDILATINKFIEANRLPHLLLYGPPG----TGKTSTILALARRIY 103
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTM------------HKSSYKLIIL 208
N+ R VLELNASDDRGI +VR+QI FASTK + +S+KLIIL
Sbjct: 104 GSNNMRQM--VLELNASDDRGIDVVREQIKTFASTKQIFSMAAPSASSGSSLASFKLIIL 161
Query: 209 DEADAMTNDAQNALRR-------------------------------------------- 224
DEADAMT+ AQ ALRR
Sbjct: 162 DEADAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRS 221
Query: 225 ---------KLPVTPDGKKAIIDLSDGDMRKVLNILQSA---------ATAHADE----- 261
++ + P+ +++ LS GDMR+ LN+LQ+ A DE
Sbjct: 222 LVDQVIEKEQIRIQPEAVSSLVRLSKGDMRRALNVLQACHASSRPLPMKNATNDEPQSEP 281
Query: 262 --VNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ +T+Y+ + P ++I I+ LL+ S
Sbjct: 282 EIITNETIYDCIAAPHPSDIQEIMTTLLSTS 312
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488
P D IM+ L +S +I + +K KGLAL DIL+ ++ + +LE+P
Sbjct: 298 PSDIQEIMTTL----LSTSDITSCLNTLNTLKANKGLALADILSALAEQLQQLEVPPQTR 353
Query: 489 VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
+ + ++DIE+RL+AG SE +Q ++ + + ++A
Sbjct: 354 ITWLEGLADIEFRLSAGGSETMQTGGMVGVIRNGCELMDA 393
>gi|358368166|dbj|GAA84783.1| activator 1 subunit 3 [Aspergillus kawachii IFO 4308]
Length = 402
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 93/154 (60%), Positives = 108/154 (70%), Gaps = 15/154 (9%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F++ N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 63 DILATINKFVEANRLPHLLLYGPPGTGKTSTILALARRIYGAKNMRQMVLELNASDDRGI 122
Query: 352 GIVRDQIFQFASTKTMHK---------------SSYKLIILDEADAMTNDAQNALRRIIE 396
+VR+QI FASTK + +SYKLIILDEADAMT AQ ALRRI+E
Sbjct: 123 DVVREQIKTFASTKQIFSMAPSSSTSTSTSSNLASYKLIILDEADAMTATAQMALRRIME 182
Query: 397 KFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
K+T N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 183 KYTANTRFCIIANYTHKLSPALLSRCTRFRFSPL 216
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 103/212 (48%), Gaps = 53/212 (25%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL + I +D VIE+E+VN+ P+
Sbjct: 181 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDLVIEKEEVNIQPEA 240
Query: 61 KKAIIDLSDGDMRKVLNILQSA-------------------------------------- 82
+++ LS GDMR+ LN+LQ+
Sbjct: 241 VDSLVRLSKGDMRRALNVLQACFASSIPLPMKNAPKDQDQDQDAKGRPEAEVITNETIYD 300
Query: 83 --ATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ------------DIISTIEIPE 128
A H ++ E+ + TLL + ST++ L +++ D + +E+P
Sbjct: 301 CIAAPHPSDI-EEIMTTLLATSDVTSCLSTINTLKANKGLALADILAALGDQLQRLEVPA 359
Query: 129 SMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
V + +++IE+RLA G SE +Q L+
Sbjct: 360 QTRVTWLEGLAEIEWRLAGGGSETMQTGGLVG 391
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 81/140 (57%), Gaps = 25/140 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+TL+++ HQDI++TI + + L L+L GT + + AL
Sbjct: 47 VEKYRPNTLEDVSGHQDILATINKFVEANRLPHLLLYGP-------PGTGKTSTILALAR 99
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK---------------SSYK 204
A++ + VLELNASDDRGI +VR+QI FASTK + +SYK
Sbjct: 100 RIYGAKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSSSTSTSTSSNLASYK 159
Query: 205 LIILDEADAMTNDAQNALRR 224
LIILDEADAMT AQ ALRR
Sbjct: 160 LIILDEADAMTATAQMALRR 179
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K KGLAL DIL + + RLE+P V + +++IE+RLA G SE +Q L
Sbjct: 330 INTLKANKGLALADILAALGDQLQRLEVPAQTRVTWLEGLAEIEWRLAGGGSETMQTGGL 389
Query: 516 IA 517
+
Sbjct: 390 VG 391
>gi|303281602|ref|XP_003060093.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458748|gb|EEH56045.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 332
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 112/150 (74%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I R E++LPHLL YGPPGTGKT+TILA A++LY A F M LELNASDDRGI
Sbjct: 19 DIIDTIGRLTKEDKLPHLLLYGPPGTGKTSTILAVAKELYGPA-FAQMTLELNASDDRGI 77
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR++I FAST + + +KLIILDE D+MT DAQ ALRR+IEK+T + RFC+I NY+
Sbjct: 78 DVVRNEIQSFASTMRFNATGFKLIILDECDSMTKDAQFALRRVIEKYTKHTRFCLIGNYV 137
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRF PL + R+ +
Sbjct: 138 SKIIPALQSRCTRFRFAPLGPESVRERVKH 167
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 112/207 (54%), Gaps = 38/207 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T + RFC+I NY+SKI PA+QSRCTRFRF PL + R+ +V+ E V +T +G
Sbjct: 121 IEKYTKHTRFCLIGNYVSKIIPALQSRCTRFRFAPLGPESVRERVKHVVASEGVEITEEG 180
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA---DEVNEDTIFTL----LVSRVEKYRPSTLD- 112
A+ L GDMR+ LNILQ+ + +H D V ED L + + + RP+ ++
Sbjct: 181 LAAVQTLGAGDMRRTLNILQARSYSHWSPYDPVGEDPAAPLDADAVYATTGQPRPADVEA 240
Query: 113 -----------ELVSHQDIIST-------------------IEIPESMLVDLVLKMSDIE 142
E V+ + I T + +P + LV +M+D+E
Sbjct: 241 IAGVLLNEPFAEAVARVEEIKTSRGLALGDVARLLCEYVFRLHMPPTARAALVSEMADVE 300
Query: 143 YRLAAGTSEKIQLSALIAAFNSARDKL 169
+RLA T E++QL AL+ AF++A++ +
Sbjct: 301 HRLAYVTHERMQLLALVGAFSNAKEAI 327
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 114/255 (44%), Gaps = 77/255 (30%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRPS L ++ +H+DII TI + K + + L G + S ++A
Sbjct: 3 VEKYRPSRLADVAAHKDIIDTI--------GRLTKEDKLPHLLLYGPPGTGKTSTILAVA 54
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
+ A ++ LELNASDDRGI +VR++I FAST + + +KLIILDE D+MT DA
Sbjct: 55 KELYGPAFAQM-TLELNASDDRGIDVVRNEIQSFASTMRFNATGFKLIILDECDSMTKDA 113
Query: 219 QNALRRKL---------------------------------PVTP--------------- 230
Q ALRR + P+ P
Sbjct: 114 QFALRRVIEKYTKHTRFCLIGNYVSKIIPALQSRCTRFRFAPLGPESVRERVKHVVASEG 173
Query: 231 -----DGKKAIIDLSDGDMRKVLNILQSAATAH-----------ADEVNEDTVYNSVGYP 274
+G A+ L GDMR+ LNILQ+ + +H A ++ D VY + G P
Sbjct: 174 VEITEEGLAAVQTLGAGDMRRTLNILQARSYSHWSPYDPVGEDPAAPLDADAVYATTGQP 233
Query: 275 TKTEITNILRWLLNE 289
++ I LLNE
Sbjct: 234 RPADVEAIAGVLLNE 248
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 49/72 (68%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
+++EIK +GLAL D+ + V RL +P + LV +M+D+E+RLA T E++QL A
Sbjct: 256 RVEEIKTSRGLALGDVARLLCEYVFRLHMPPTARAALVSEMADVEHRLAYVTHERMQLLA 315
Query: 515 LIAAFNSARDKL 526
L+ AF++A++ +
Sbjct: 316 LVGAFSNAKEAI 327
>gi|119182767|ref|XP_001242497.1| hypothetical protein CIMG_06393 [Coccidioides immitis RS]
gi|392865396|gb|EAS31179.2| activator 1 subunit 3 [Coccidioides immitis RS]
Length = 398
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 107/150 (71%), Gaps = 11/150 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRFI+ N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 62 DIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIYGVKNVRQMVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTKTMHK-----------SSYKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VR+QI FASTK + ++KLIILDEADAMT AQ ALRRI+EK+T
Sbjct: 122 DVVREQIKTFASTKQIFSMTPGGQAGSKLGAFKLIILDEADAMTAAAQMALRRIMEKYTA 181
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 182 NTRFCIIANYTHKLTPALLSRCTRFRFSPL 211
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 100/210 (47%), Gaps = 45/210 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K+TPA+ SRCTRFRF PL I +D VIE+E+V + PD
Sbjct: 176 MEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIRVLVDQVIEKEQVRIQPDA 235
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA-----------------HADEVNEDTIFTLLVSRV 103
+++ LS GDMR+ LN+LQ+ + + + +DTI+T + +
Sbjct: 236 IDSLVRLSKGDMRRALNVLQACHASSMPLPLRDVPKDQQPAREPETITDDTIYTCIAAPR 295
Query: 104 EKYRPSTLDELVSHQDIIST----------------------------IEIPESMLVDLV 135
+ ++ L+S D+ S IE+P V +
Sbjct: 296 PLDIKTIMETLLSTSDVTSCLNTIQTLKISKGLALADILTALANELQHIEVPAQTRVAWL 355
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSA 165
++DIE+RL+ G +E IQ L+
Sbjct: 356 EGLADIEWRLSGGGAEAIQTGGLVGVIRGG 385
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 118/271 (43%), Gaps = 89/271 (32%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPSTLD++ HQDII+TI I + L L+L + TS + L+ I
Sbjct: 46 VEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGK----TSTILALARQIY 101
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-----------SSYKLIILD 209
+ R VLELNASDDRGI +VR+QI FASTK + ++KLIILD
Sbjct: 102 GVKNVRQM--VLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSKLGAFKLIILD 159
Query: 210 EADAMTNDAQNALRR--------------------------------------------- 224
EADAMT AQ ALRR
Sbjct: 160 EADAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIRVL 219
Query: 225 --------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATA-----------------HA 259
++ + PD +++ LS GDMR+ LN+LQ+ +
Sbjct: 220 VDQVIEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQACHASSMPLPLRDVPKDQQPAREP 279
Query: 260 DEVNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ + +DT+Y + P +I I+ LL+ S
Sbjct: 280 ETITDDTIYTCIAAPRPLDIKTIMETLLSTS 310
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488
PLD IM L +S ++ IQ +KI KGLAL DILT ++ + +E+P
Sbjct: 296 PLDIKTIMETL----LSTSDVTSCLNTIQTLKISKGLALADILTALANELQHIEVPAQTR 351
Query: 489 VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
V + ++DIE+RL+ G +E IQ L+
Sbjct: 352 VAWLEGLADIEWRLSGGGAEAIQTGGLVGVIRGG 385
>gi|303319413|ref|XP_003069706.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240109392|gb|EER27561.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 398
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 107/150 (71%), Gaps = 11/150 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRFI+ N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 62 DIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIYGVKNVRQMVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTKTMHK-----------SSYKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VR+QI FASTK + ++KLIILDEADAMT AQ ALRRI+EK+T
Sbjct: 122 DVVREQIKTFASTKQIFSMTPGGQAGSKLGAFKLIILDEADAMTAAAQMALRRIMEKYTA 181
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 182 NTRFCIIANYTHKLTPALLSRCTRFRFSPL 211
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 100/210 (47%), Gaps = 45/210 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K+TPA+ SRCTRFRF PL I +D VIE+E+V + PD
Sbjct: 176 MEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIRVLVDQVIEKEQVRIQPDA 235
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA-----------------HADEVNEDTIFTLLVSRV 103
+++ LS GDMR+ LN+LQ+ + + + +DTI+T + +
Sbjct: 236 IDSLVRLSKGDMRRALNVLQACHASSMPLPLRDVPRDQQPAREPETITDDTIYTCIAAPR 295
Query: 104 EKYRPSTLDELVSHQDIIST----------------------------IEIPESMLVDLV 135
+ ++ L+S D+ S IE+P V +
Sbjct: 296 PSDIKTIMETLLSTSDVTSCLNTIQTLKISKGLALADILTALANELQHIEVPAQTRVAWL 355
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSA 165
++DIE+RL+ G +E IQ L+
Sbjct: 356 EGLADIEWRLSGGGAEAIQTGGLVGVIRGG 385
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 119/271 (43%), Gaps = 89/271 (32%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPSTLD++ HQDII+TI I + L L+L + TS + L+ I
Sbjct: 46 VEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGK----TSTILALARQIY 101
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-----------SSYKLIILD 209
+ R VLELNASDDRGI +VR+QI FASTK + ++KLIILD
Sbjct: 102 GVKNVRQM--VLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSKLGAFKLIILD 159
Query: 210 EADAMTNDAQNALRR--------------------------------------------- 224
EADAMT AQ ALRR
Sbjct: 160 EADAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIRVL 219
Query: 225 --------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATA-----------------HA 259
++ + PD +++ LS GDMR+ LN+LQ+ +
Sbjct: 220 VDQVIEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQACHASSMPLPLRDVPRDQQPAREP 279
Query: 260 DEVNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ + +DT+Y + P ++I I+ LL+ S
Sbjct: 280 ETITDDTIYTCIAAPRPSDIKTIMETLLSTS 310
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
IQ +KI KGLAL DILT ++ + +E+P V + ++DIE+RL+ G +E IQ L
Sbjct: 319 IQTLKISKGLALADILTALANELQHIEVPAQTRVAWLEGLADIEWRLSGGGAEAIQTGGL 378
Query: 516 IAAFNSA 522
+
Sbjct: 379 VGVIRGG 385
>gi|320040847|gb|EFW22780.1| DNA replication factor C subunit [Coccidioides posadasii str.
Silveira]
Length = 398
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 107/150 (71%), Gaps = 11/150 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRFI+ N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 62 DIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIYGVKNVRQMVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTKTMHK-----------SSYKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VR+QI FASTK + ++KLIILDEADAMT AQ ALRRI+EK+T
Sbjct: 122 DVVREQIKTFASTKQIFSMTPGGQAGSNLGAFKLIILDEADAMTAAAQMALRRIMEKYTA 181
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 182 NTRFCIIANYTHKLTPALLSRCTRFRFSPL 211
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 100/210 (47%), Gaps = 45/210 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K+TPA+ SRCTRFRF PL I +D VIE+E+V + PD
Sbjct: 176 MEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIRVLVDQVIEKEQVRIQPDA 235
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA-----------------HADEVNEDTIFTLLVSRV 103
+++ LS GDMR+ LN+LQ+ + + + +DTI+T + +
Sbjct: 236 IDSLVRLSKGDMRRALNVLQACHASSMPLPLRDVPRDQQPAREPETITDDTIYTCIAAPR 295
Query: 104 EKYRPSTLDELVSHQDIIST----------------------------IEIPESMLVDLV 135
+ ++ L+S D+ S IE+P V +
Sbjct: 296 PSDIKTIMETLLSTSDVTSCLNTIQTLKISKGLALADILTALANELQHIEVPAQTRVAWL 355
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSA 165
++DIE+RL+ G +E IQ L+
Sbjct: 356 EGLADIEWRLSGGGAEAIQTGGLVGVIRGG 385
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 119/271 (43%), Gaps = 89/271 (32%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPSTLD++ HQDII+TI I + L L+L + TS + L+ I
Sbjct: 46 VEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGK----TSTILALARQIY 101
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-----------SSYKLIILD 209
+ R VLELNASDDRGI +VR+QI FASTK + ++KLIILD
Sbjct: 102 GVKNVRQM--VLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSNLGAFKLIILD 159
Query: 210 EADAMTNDAQNALRR--------------------------------------------- 224
EADAMT AQ ALRR
Sbjct: 160 EADAMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIRVL 219
Query: 225 --------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATA-----------------HA 259
++ + PD +++ LS GDMR+ LN+LQ+ +
Sbjct: 220 VDQVIEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQACHASSMPLPLRDVPRDQQPAREP 279
Query: 260 DEVNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ + +DT+Y + P ++I I+ LL+ S
Sbjct: 280 ETITDDTIYTCIAAPRPSDIKTIMETLLSTS 310
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
IQ +KI KGLAL DILT ++ + +E+P V + ++DIE+RL+ G +E IQ L
Sbjct: 319 IQTLKISKGLALADILTALANELQHIEVPAQTRVAWLEGLADIEWRLSGGGAEAIQTGGL 378
Query: 516 IAAFNSA 522
+
Sbjct: 379 VGVIRGG 385
>gi|396495754|ref|XP_003844622.1| similar to replication factor C subunit 3 [Leptosphaeria maculans
JN3]
gi|312221202|emb|CBY01143.1| similar to replication factor C subunit 3 [Leptosphaeria maculans
JN3]
Length = 409
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/159 (57%), Positives = 112/159 (70%), Gaps = 10/159 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+T+LA AR++Y MVLELNASDDRGI
Sbjct: 78 DIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASDDRGI 137
Query: 352 GIVRDQIFQFASTKTMHK----------SSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+VR+QI F+STK + +++KLIILDEADAMT AQ ALRRI+EK+T N
Sbjct: 138 DVVREQIKTFSSTKQIFSAAPKAGDTALATFKLIILDEADAMTATAQMALRRIMEKYTAN 197
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
RFCII NY K+ PA+ SRCTRFRF PL I + +D
Sbjct: 198 TRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVD 236
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 45/205 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I + +D VIE+E VN+T D
Sbjct: 191 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKVIEEENVNITQDA 250
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIFTLLVSRV 103
+++ LS GDMR+ LN+LQ+ + D++ + TI+ + +
Sbjct: 251 TDSLVSLSKGDMRRALNVLQACHASSTPLQAPGKPAPDPSIIVRDQITQTTIYDCIAAPH 310
Query: 104 EKYRPSTLDELVSHQDI----------------------------ISTIEIPESMLVDLV 135
++ L+S D+ + T ++P ++V +
Sbjct: 311 PSDIKYIIETLLSKNDMTECLRTVNNLKISKGLALADILTAISEELVTNDVPPQVMVTWM 370
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIA 160
++DIEYRL+ G SE IQ A I
Sbjct: 371 SGLADIEYRLSGGGSEAIQTGAAIG 395
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 85/140 (60%), Gaps = 20/140 (14%)
Query: 98 LLVSRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
L+++RVEKYRP++LD++ HQDII+TI + + L L+L GT + +
Sbjct: 57 LMINRVEKYRPNSLDDVEGHQDIIATINKFVDSNRLPHLLLYGP-------PGTGKTSTV 109
Query: 156 SALIAAFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK----------SSYK 204
AL ++ + VLELNASDDRGI +VR+QI F+STK + +++K
Sbjct: 110 LALARRIYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFSAAPKAGDTALATFK 169
Query: 205 LIILDEADAMTNDAQNALRR 224
LIILDEADAMT AQ ALRR
Sbjct: 170 LIILDEADAMTATAQMALRR 189
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+ +KI KGLAL DILT IS + ++P ++V + ++DIEYRL+ G SE IQ A
Sbjct: 334 VNNLKISKGLALADILTAISEELVTNDVPPQVMVTWMSGLADIEYRLSGGGSEAIQTGAA 393
Query: 516 IA 517
I
Sbjct: 394 IG 395
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 18/87 (20%)
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTVYNS 270
+T D +++ LS GDMR+ LN+LQ+ + D++ + T+Y+
Sbjct: 246 ITQDATDSLVSLSKGDMRRALNVLQACHASSTPLQAPGKPAPDPSIIVRDQITQTTIYDC 305
Query: 271 VGYPTKTEITNILRWLLNES-MDLCYK 296
+ P ++I I+ LL+++ M C +
Sbjct: 306 IAAPHPSDIKYIIETLLSKNDMTECLR 332
>gi|149238019|ref|XP_001524886.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146451483|gb|EDK45739.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 377
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/153 (60%), Positives = 117/153 (76%), Gaps = 5/153 (3%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + RF++ +LPHLLFYGPPGTGKT+TI+A AR++Y + MVLELNASDDRGI
Sbjct: 71 DIVNTVRRFVETGKLPHLLFYGPPGTGKTSTIVALAREIY-GPNYKNMVLELNASDDRGI 129
Query: 352 GIVRDQIFQFASTKTMHKSS----YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII 407
+VR+QI FAST+ + S+ +KLIILDEADAMT+ AQN+LRRIIEKFT N RFCI+
Sbjct: 130 DVVRNQIKSFASTRQIFTSASSPQFKLIILDEADAMTSVAQNSLRRIIEKFTKNCRFCIL 189
Query: 408 CNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
NY K+ PA+ SRCTRFRF P+D I SR++
Sbjct: 190 ANYSHKLNPALISRCTRFRFHPIDEEAIRSRIN 222
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 121/262 (46%), Gaps = 64/262 (24%)
Query: 93 DTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+ I T RVEKYRP L+E+ DI++T+ V+ K+ + + GT +
Sbjct: 45 NLILTNFYYRVEKYRPENLEEVYGQGDIVNTVR----RFVE-TGKLPHLLFYGPPGTGKT 99
Query: 153 IQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----YKLIIL 208
+ AL K VLELNASDDRGI +VR+QI FAST+ + S+ +KLIIL
Sbjct: 100 STIVALAREIYGPNYKNMVLELNASDDRGIDVVRNQIKSFASTRQIFTSASSPQFKLIIL 159
Query: 209 DEADAMTNDAQNALRR-------------------------------------------- 224
DEADAMT+ AQN+LRR
Sbjct: 160 DEADAMTSVAQNSLRRIIEKFTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEEAIRS 219
Query: 225 ---------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADE--VNEDTVYNSVGY 273
K+ +TPD A++ LS GDMR+ LN+LQ+ A D+ ++ D +YN VG
Sbjct: 220 RINNVIIKEKVDITPDALNALLHLSQGDMRRSLNVLQACKAAVNDDETIDIDMIYNCVGA 279
Query: 274 PTKTEITNILRWLLNESMDLCY 295
P +I L +L + Y
Sbjct: 280 PHPQDIEACLDSILKDDWTTAY 301
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 29/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFCI+ NY K+ PA+ SRCTRFRF P+D I SR++ VI +EKV++TPD
Sbjct: 177 IEKFTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEEAIRSRINNVIIKEKVDITPDA 236
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE--VNEDTIFTLLVS----------------- 101
A++ LS GDMR+ LN+LQ+ A D+ ++ D I+ + +
Sbjct: 237 LNALLHLSQGDMRRSLNVLQACKAAVNDDETIDIDMIYNCVGAPHPQDIEACLDSILKDD 296
Query: 102 ------RVEKYRP----STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE 151
+ KY+ + +D + +I++ E+ V + +SDIEY ++ G ++
Sbjct: 297 WTTAYLTLTKYKTVNGLALVDLITGFIEILNKYELKPENRVYYLKGLSDIEYGISKGGND 356
Query: 152 KIQLSALIAAFNSA 165
+IQ SA+I A
Sbjct: 357 RIQSSAIIGVIKQA 370
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y+ + + K GLAL D++T ++++ E+ V + +SDIEY ++ G +++IQ
Sbjct: 301 YLTLTKYKTVNGLALVDLITGFIEILNKYELKPENRVYYLKGLSDIEYGISKGGNDRIQS 360
Query: 513 SALIAAFNSA 522
SA+I A
Sbjct: 361 SAIIGVIKQA 370
>gi|189189278|ref|XP_001930978.1| replication factor C subunit 3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972584|gb|EDU40083.1| replication factor C subunit 3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 393
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/159 (57%), Positives = 112/159 (70%), Gaps = 10/159 (6%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+T+LA AR++Y MVLELNASDDRGI
Sbjct: 62 DIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASDDRGI 121
Query: 352 GIVRDQIFQFASTKTMHK----------SSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+VR+QI F+STK + +++KLIILDEADAMT AQ ALRRI+EK+T N
Sbjct: 122 DVVREQIKTFSSTKQIFAAAPRAGDSSLATFKLIILDEADAMTATAQMALRRIMEKYTAN 181
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
RFCII NY K+ PA+ SRCTRFRF PL I + +D
Sbjct: 182 TRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVD 220
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 45/215 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I + +D VIE EKVN+T D
Sbjct: 175 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKVIEDEKVNITQDA 234
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------------DEVNEDTIFTLLVSRV 103
+++ LS GDMR+ LN+LQ+ + D++ + TI+ + +
Sbjct: 235 TGSLVTLSKGDMRRALNVLQACHASSTPLQPPGRPAVDPNTIVRDQITQTTIYDCIAAPH 294
Query: 104 EKYRPSTLDELVSHQDI----------------------------ISTIEIPESMLVDLV 135
L+ L+S D+ + T ++P ++V +
Sbjct: 295 PSDIKYILETLLSKNDMTECLRTVNNLKIMKGLALADILTAVSEELVTNDVPPQVMVTWM 354
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLE 170
++DIEYRL+ G SE IQ A I + + LE
Sbjct: 355 SGLADIEYRLSGGGSETIQTGAAIGVVRTGVELLE 389
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 125/278 (44%), Gaps = 91/278 (32%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP++LD++ H+DII+TI + + L L+L GT + + AL
Sbjct: 46 VEKYRPNSLDDVEGHKDIIATINKFVDSNRLPHLLLYG-------PPGTGKTSTVLALAR 98
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK----------SSYKLIILD 209
++ + VLELNASDDRGI +VR+QI F+STK + +++KLIILD
Sbjct: 99 RIYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAAAPRAGDSSLATFKLIILD 158
Query: 210 EADAMTNDAQNALRR--------------------------------------------- 224
EADAMT AQ ALRR
Sbjct: 159 EADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNL 218
Query: 225 --------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHA----------------- 259
K+ +T D +++ LS GDMR+ LN+LQ+ +
Sbjct: 219 VDKVIEDEKVNITQDATGSLVTLSKGDMRRALNVLQACHASSTPLQPPGRPAVDPNTIVR 278
Query: 260 DEVNEDTVYNSVGYPTKTEITNILRWLLNES-MDLCYK 296
D++ + T+Y+ + P ++I IL LL+++ M C +
Sbjct: 279 DQITQTTIYDCIAAPHPSDIKYILETLLSKNDMTECLR 316
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+ +KI KGLAL DILT +S + ++P ++V + ++DIEYRL+ G SE IQ A
Sbjct: 318 VNNLKIMKGLALADILTAVSEELVTNDVPPQVMVTWMSGLADIEYRLSGGGSETIQTGAA 377
Query: 516 IAAFNSARDKLE 527
I + + LE
Sbjct: 378 IGVVRTGVELLE 389
>gi|294873159|ref|XP_002766534.1| replication factor C3, putative [Perkinsus marinus ATCC 50983]
gi|239867474|gb|EEQ99251.1| replication factor C3, putative [Perkinsus marinus ATCC 50983]
Length = 354
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/200 (48%), Positives = 131/200 (65%), Gaps = 13/200 (6%)
Query: 255 ATAHADEVNEDT--VYNSVGYPTKTEITNILRWL------LNESMDLCYKINRFIDENEL 306
+TA +++E+T SV P E+ + ++ L ++ I RF+ N L
Sbjct: 2 STAEPMDLDEETPAAGGSVFLPPANELPWVEKYRPKTLDDLVAHQEIIETIKRFVKMNAL 61
Query: 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKT 366
PHLL +GPPGTGKT+TILACAR++Y Q VLELNASD RGI +VR+ I QF S+++
Sbjct: 62 PHLLLHGPPGTGKTSTILACARQMYPPGQLRQYVLELNASDARGIDVVRECIKQFVSSRS 121
Query: 367 MHKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSR 421
M S KL+ILDEAD MT+ +Q ALRR+IE++++N RFC+ICNY SKI PA+QSR
Sbjct: 122 MFSGSLGTNMPKLVILDEADNMTSVSQFALRRVIEQYSSNARFCLICNYASKIIPALQSR 181
Query: 422 CTRFRFGPLDSSLIMSRLDY 441
CT+FRF PL + R+DY
Sbjct: 182 CTKFRFAPLKDAEARMRVDY 201
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 108/197 (54%), Gaps = 28/197 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++++N RFC+ICNY SKI PA+QSRCT+FRF PL + R+DYV + E V ++ DG
Sbjct: 155 IEQYSSNARFCLICNYASKIIPALQSRCTKFRFAPLKDAEARMRVDYVAKCEGVKISEDG 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF--------TLLVSRVE-------- 104
A++ +GDMRKVLN LQS ++ + I T + R+E
Sbjct: 215 MLALLRTGEGDMRKVLNTLQSCTLSYPSHTVDANIIHKVAGLPETSTIDRLEAVLCQKPL 274
Query: 105 ------------KYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
K+ S D L D + T+++P L +++IEYRL++G SEK
Sbjct: 275 REGMMVIEELRVKHGYSVADLLREIHDRMVTVDMPPRARNLLFRDLAEIEYRLSSGCSEK 334
Query: 153 IQLSALIAAFNSARDKL 169
+Q +AL+ +F+ R+ +
Sbjct: 335 VQGAALVGSFHEIREMM 351
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 79/131 (60%), Gaps = 17/131 (12%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TLD+LV+HQ+II TI+ +KM+ + + L G + S ++A
Sbjct: 31 VEKYRPKTLDDLVAHQEIIETIK--------RFVKMNALPHLLLHGPPGTGKTSTILACA 82
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSY-----KLIILDEADA 213
+ + + VLELNASD RGI +VR+ I QF S+++M S KL+ILDEAD
Sbjct: 83 RQMYPPGQLRQYVLELNASDARGIDVVRECIKQFVSSRSMFSGSLGTNMPKLVILDEADN 142
Query: 214 MTNDAQNALRR 224
MT+ +Q ALRR
Sbjct: 143 MTSVSQFALRR 153
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 48/73 (65%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I+E++++ G ++ D+L EI + +++P L +++IEYRL++G SEK+Q +AL
Sbjct: 281 IEELRVKHGYSVADLLREIHDRMVTVDMPPRARNLLFRDLAEIEYRLSSGCSEKVQGAAL 340
Query: 516 IAAFNSARDKLEA 528
+ +F+ R+ + A
Sbjct: 341 VGSFHEIREMMVA 353
>gi|255955413|ref|XP_002568459.1| Pc21g14450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590170|emb|CAP96342.1| Pc21g14450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 392
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/150 (60%), Positives = 108/150 (72%), Gaps = 11/150 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRF++ N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 59 DILATINRFVETNRLPHLLLYGPPGTGKTSTILALARRIYGTKNMRQMVLELNASDDRGI 118
Query: 352 GIVRDQIFQFASTKTMHK-----------SSYKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VR+QI FASTK + + +KLIILDEADAMT+ AQ ALRRI+E++T
Sbjct: 119 DVVREQIKTFASTKQIFNMAPQGTAGSPLAGFKLIILDEADAMTSTAQMALRRIMERYTA 178
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
N RFC+I NY K+ PA+ SRCTRFRF PL
Sbjct: 179 NTRFCVIANYTHKLSPALLSRCTRFRFSPL 208
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 59/231 (25%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E++T N RFC+I NY K++PA+ SRCTRFRF PL I + +D VIE+E V + PD
Sbjct: 173 MERYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKEVDIRTLVDQVIEKEGVKIQPDA 232
Query: 61 KKAIIDLSDGDMRKVLNILQS---------------AATAHADEVNEDTIFTLLVSRVEK 105
+++ LS GDMR+ LN+LQ+ A + V TI+ + +
Sbjct: 233 VDSLVTLSKGDMRRALNVLQACFASSIPLPMRDAPKAPRPEPETVTNATIYDCIAA---- 288
Query: 106 YRPSTLDELVSH-------------------------QDIIST-------IEIPESMLVD 133
PS + E+++ DI+S +++P +
Sbjct: 289 PHPSDIQEIMTTILSTSDVTSCLNTVQTLKTTKGLALADILSALADQLQQLDVPAQTRIT 348
Query: 134 LVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGI 184
+ +++IE+RLA G SE IQ L+ R+ E++ D+G+ +
Sbjct: 349 WLEGLAEIEWRLAGGGSEAIQTGGLVGVV---RNGCELM-----GDKGVTV 391
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 118/271 (43%), Gaps = 91/271 (33%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
VEKYRPS+LD++ HQDI++TI + ++ + + + L G + S ++A
Sbjct: 43 VEKYRPSSLDDVSGHQDILATI--------NRFVETNRLPHLLLYGPPGTGKTSTILALA 94
Query: 161 --AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-----------SSYKLII 207
+ + + VLELNASDDRGI +VR+QI FASTK + + +KLII
Sbjct: 95 RRIYGTKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFNMAPQGTAGSPLAGFKLII 154
Query: 208 LDEADAMTNDAQNAL--------------------------------------------- 222
LDEADAMT+ AQ AL
Sbjct: 155 LDEADAMTSTAQMALRRIMERYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKEVDIR 214
Query: 223 --------RRKLPVTPDGKKAIIDLSDGDMRKVLNILQS---------------AATAHA 259
+ + + PD +++ LS GDMR+ LN+LQ+ A
Sbjct: 215 TLVDQVIEKEGVKIQPDAVDSLVTLSKGDMRRALNVLQACFASSIPLPMRDAPKAPRPEP 274
Query: 260 DEVNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ V T+Y+ + P ++I I+ +L+ S
Sbjct: 275 ETVTNATIYDCIAAPHPSDIQEIMTTILSTS 305
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+Q +K KGLAL DIL+ ++ + +L++P + + +++IE+RLA G SE IQ L
Sbjct: 314 VQTLKTTKGLALADILSALADQLQQLDVPAQTRITWLEGLAEIEWRLAGGGSEAIQTGGL 373
Query: 516 IAAFNSA 522
+ +
Sbjct: 374 VGVVRNG 380
>gi|119499175|ref|XP_001266345.1| DNA replication factor C subunit Rfc3, putative [Neosartorya
fischeri NRRL 181]
gi|119414509|gb|EAW24448.1| DNA replication factor C subunit Rfc3, putative [Neosartorya
fischeri NRRL 181]
Length = 396
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/161 (59%), Positives = 113/161 (70%), Gaps = 12/161 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+FI+ N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 64 DILATINKFIEANRLPHLLLYGPPGTGKTSTILALARRIYGSNNMRQMVLELNASDDRGI 123
Query: 352 GIVRDQIFQFASTKTM------------HKSSYKLIILDEADAMTNDAQNALRRIIEKFT 399
+VR+QI FASTK + +S+KLIILDEADAMT+ AQ ALRRI+E++T
Sbjct: 124 DVVREQIKTFASTKQIFSMAAPSASSGSSLASFKLIILDEADAMTSTAQMALRRIMERYT 183
Query: 400 TNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
N RFCII NY K+ PA+ SRCTRFRF PL I S +D
Sbjct: 184 ANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVD 224
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 110/224 (49%), Gaps = 55/224 (24%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E++T N RFCII NY K++PA+ SRCTRFRF PL I S +D VIE+E++++ P+
Sbjct: 179 MERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVDQVIEKEQIHIQPEA 238
Query: 61 KKAIIDLSDGDMRKVLNILQSA---------ATAHADE-------VNEDTIFTLLVSRVE 104
+++ LS GDMR+ LN+LQ+ A DE + +TI+ + +
Sbjct: 239 VSSLVRLSKGDMRRALNVLQACHASSKPLPMKNATKDEPQSEPEIITNETIYDCIAA--- 295
Query: 105 KYRPSTLDE----LVSHQDIIST----------------------------IEIPESMLV 132
PS + E L+S DI S +E+P +
Sbjct: 296 -PHPSDIQEIMTTLLSTSDITSCLNTVNTLKANKGLALADILSALAEQLQQLEVPPQTRI 354
Query: 133 DLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNA 176
+ ++D+E+RL+AG SE +Q ++ R+ E+++ A
Sbjct: 355 TWLEGLADVEFRLSAGGSETMQTGGMVGVI---RNGCELMDAKA 395
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 122/271 (45%), Gaps = 89/271 (32%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+TLD++ HQDI++TI I + L L+L TS + L+ I
Sbjct: 48 VEKYRPNTLDDVSGHQDILATINKFIEANRLPHLLLYGPP----GTGKTSTILALARRIY 103
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTM------------HKSSYKLIIL 208
N+ R VLELNASDDRGI +VR+QI FASTK + +S+KLIIL
Sbjct: 104 GSNNMRQM--VLELNASDDRGIDVVREQIKTFASTKQIFSMAAPSASSGSSLASFKLIIL 161
Query: 209 DEADAMTNDAQNALRR-------------------------------------------- 224
DEADAMT+ AQ ALRR
Sbjct: 162 DEADAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRS 221
Query: 225 ---------KLPVTPDGKKAIIDLSDGDMRKVLNILQSA---------ATAHADE----- 261
++ + P+ +++ LS GDMR+ LN+LQ+ A DE
Sbjct: 222 LVDQVIEKEQIHIQPEAVSSLVRLSKGDMRRALNVLQACHASSKPLPMKNATKDEPQSEP 281
Query: 262 --VNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ +T+Y+ + P ++I I+ LL+ S
Sbjct: 282 EIITNETIYDCIAAPHPSDIQEIMTTLLSTS 312
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488
P D IM+ L +S +I + +K KGLAL DIL+ ++ + +LE+P
Sbjct: 298 PSDIQEIMTTL----LSTSDITSCLNTVNTLKANKGLALADILSALAEQLQQLEVPPQTR 353
Query: 489 VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
+ + ++D+E+RL+AG SE +Q ++ + + ++A
Sbjct: 354 ITWLEGLADVEFRLSAGGSETMQTGGMVGVIRNGCELMDA 393
>gi|126137263|ref|XP_001385155.1| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
gi|126092377|gb|ABN67126.1| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
Length = 322
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/143 (62%), Positives = 107/143 (74%), Gaps = 1/143 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +F EN LPHLLFYGPPGTGKT+TI+A AR++Y + MVLELNASDDRGI +VR+
Sbjct: 24 VKKFAHENRLPHLLFYGPPGTGKTSTIIALAREIYG-TNYKNMVLELNASDDRGIDVVRN 82
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST + +KLIILDEADAMT AQN+LRRIIEK+T N RFCI+ NY K+ P
Sbjct: 83 QIKNFASTMQIFSRGFKLIILDEADAMTAVAQNSLRRIIEKYTKNTRFCILANYAHKLNP 142
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
A+ SRCTRFRF P+ I R+
Sbjct: 143 ALLSRCTRFRFHPISEDAIKDRI 165
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 120/258 (46%), Gaps = 66/258 (25%)
Query: 102 RVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
RVEKYRPSTLDE+ ++I+ T++ E+ L L+ + GT + + AL
Sbjct: 2 RVEKYRPSTLDEVYGQEEIVQTVKKFAHENRLPHLL-------FYGPPGTGKTSTIIALA 54
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
K VLELNASDDRGI +VR+QI FAST + +KLIILDEADAMT AQ
Sbjct: 55 REIYGTNYKNMVLELNASDDRGIDVVRNQIKNFASTMQIFSRGFKLIILDEADAMTAVAQ 114
Query: 220 NALRR-----------------------------------------------------KL 226
N+LRR L
Sbjct: 115 NSLRRIIEKYTKNTRFCILANYAHKLNPALLSRCTRFRFHPISEDAIKDRIQNVIIKESL 174
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQ---SAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
+ P + A++ LS GDMR+ LN+LQ SA + +E+ ED +Y VG P +I +L
Sbjct: 175 KIDPPAEAALLKLSKGDMRRALNVLQACKSAVDSADEEITEDMIYECVGAPHPKDIEVVL 234
Query: 284 RWLLNESMDLCY-KINRF 300
+L + Y IN++
Sbjct: 235 DSILKDDWTTAYITINKY 252
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 101/195 (51%), Gaps = 30/195 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY K+ PA+ SRCTRFRF P+ I R+ VI +E + + P
Sbjct: 121 IEKYTKNTRFCILANYAHKLNPALLSRCTRFRFHPISEDAIKDRIQNVIIKESLKIDPPA 180
Query: 61 KKAIIDLSDGDMRKVLNILQ---SAATAHADEVNEDTIF--------------------- 96
+ A++ LS GDMR+ LN+LQ SA + +E+ ED I+
Sbjct: 181 EAALLKLSKGDMRRALNVLQACKSAVDSADEEITEDMIYECVGAPHPKDIEVVLDSILKD 240
Query: 97 --TLLVSRVEKYRPST----LDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTS 150
T + KY+ + +D + +I++ ++ +++ +S+IEY ++ G +
Sbjct: 241 DWTTAYITINKYKTTKGLALIDLISGFIEILNQYKLQGKTRIEIFKGLSEIEYGISRGGN 300
Query: 151 EKIQLSALIAAFNSA 165
+KIQ SA+I A
Sbjct: 301 DKIQSSAIIGVIKDA 315
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
YI I + K KGLAL D+++ ++++ ++ +++ +S+IEY ++ G ++KIQ
Sbjct: 246 YITINKYKTTKGLALIDLISGFIEILNQYKLQGKTRIEIFKGLSEIEYGISRGGNDKIQS 305
Query: 513 SALIAAFNSA 522
SA+I A
Sbjct: 306 SAIIGVIKDA 315
>gi|452840856|gb|EME42793.1| hypothetical protein DOTSEDRAFT_80413 [Dothistroma septosporum
NZE10]
Length = 401
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/162 (57%), Positives = 111/162 (68%), Gaps = 13/162 (8%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+T LA AR++Y MVLELNASDDRGI
Sbjct: 67 DILATINKFVDTNRLPHLLLYGPPGTGKTSTALAMARRIYGNKNMRQMVLELNASDDRGI 126
Query: 352 GIVRDQIFQFASTKTMHKSS-------------YKLIILDEADAMTNDAQNALRRIIEKF 398
+VR+QI F+STK + S +KLIILDEADAMT+ AQ ALRRI+EK+
Sbjct: 127 DVVREQIKTFSSTKQIFAGSFDKSNNQNDTIAHFKLIILDEADAMTSTAQMALRRIMEKY 186
Query: 399 TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
T N RFCII NY K+ PA+ SRCTRFRF PL + I +D
Sbjct: 187 TANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDADIRQLVD 228
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 108/215 (50%), Gaps = 45/215 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL + I +D VI +E VN+ P+
Sbjct: 183 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDADIRQLVDKVISEEVVNIAPEA 242
Query: 61 KKAIIDLSDGDMRKVLNILQ----SAATAHA-------------DEVNEDTIF------- 96
+++ LS GDMR+ LN+LQ S+ H D + ++TI+
Sbjct: 243 ADSLVTLSKGDMRRALNVLQACHASSTPLHVPGQPLQESKDIERDLITQETIYDCIAAPH 302
Query: 97 ---------TLL-----------VSRVEKYRPSTL-DELVSHQDIISTIEIPESMLVDLV 135
TLL ++ ++K + L D L + + ++ IE+P V +
Sbjct: 303 PGDIDTITQTLLTTANVGSCLSTINTLKKTKGLALADILTAMGEQLTEIEVPAQTRVTWL 362
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLE 170
++DIEYRL+ G SE +Q L+ + +E
Sbjct: 363 EGLADIEYRLSGGGSESVQTGGLVGVIRNGVGLME 397
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 75/137 (54%), Gaps = 21/137 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP++L ++ H DI++TI + + L L+L Y L+
Sbjct: 51 VEKYRPNSLSDVSGHHDILATINKFVDTNRLPHLLL------YGPPGTGKTSTALAMARR 104
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------------YKLII 207
+ + + VLELNASDDRGI +VR+QI F+STK + S +KLII
Sbjct: 105 IYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAGSFDKSNNQNDTIAHFKLII 164
Query: 208 LDEADAMTNDAQNALRR 224
LDEADAMT+ AQ ALRR
Sbjct: 165 LDEADAMTSTAQMALRR 181
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K KGLAL DILT + + +E+P V + ++DIEYRL+ G SE +Q L
Sbjct: 326 INTLKKTKGLALADILTAMGEQLTEIEVPAQTRVTWLEGLADIEYRLSGGGSESVQTGGL 385
Query: 516 IAAFNSARDKLE 527
+ + +E
Sbjct: 386 VGVIRNGVGLME 397
>gi|302653321|ref|XP_003018488.1| hypothetical protein TRV_07502 [Trichophyton verrucosum HKI 0517]
gi|291182138|gb|EFE37843.1| hypothetical protein TRV_07502 [Trichophyton verrucosum HKI 0517]
Length = 416
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 109/167 (65%), Gaps = 28/167 (16%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRF+D N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 64 DIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGI 123
Query: 352 GIVRDQIFQFASTKTMHK----------------------------SSYKLIILDEADAM 383
+VR+QI FAST ++K ++KLIILDEADAM
Sbjct: 124 DVVREQIKTFASTSLVYKGRSEAESLTAIVGTKQIFSTAPSSGSGLGAFKLIILDEADAM 183
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
T+ AQ ALRRI+EK+T N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 184 TSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPL 230
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 103/209 (49%), Gaps = 44/209 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VIE E+V + PD
Sbjct: 195 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRRLVDTVIETEEVQIQPDA 254
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH---------ADE-------VNEDTIFTLLVSRVE 104
+++ LS GDMR+ LN+LQ+ + A+E + E+TI+T + +
Sbjct: 255 IDSLVKLSKGDMRRALNVLQACHASSMPLPSKNDDANEQQQERETITEETIYTCIAAPHP 314
Query: 105 KYRPSTLDELVSHQDIIS----------------------------TIEIPESMLVDLVL 136
L+ L+S D+ S ++E+P + V +
Sbjct: 315 ADIKIILETLLSTSDVTSCLNTVQTLKANKGLALADIISALSTELQSLEVPAQVRVSWIE 374
Query: 137 KMSDIEYRLAAGTSEKIQLSALIAAFNSA 165
++D+E+RL+ G SE IQ +I S
Sbjct: 375 GLADVEWRLSGGGSEVIQTGGMIGVIRSG 403
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 122/288 (42%), Gaps = 107/288 (37%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD++ HQDII+TI + + L L+L GT + + AL
Sbjct: 48 VEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYG-------PPGTGKTSTILALAR 100
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK------------------- 200
+++ + VLELNASDDRGI +VR+QI FAST ++K
Sbjct: 101 RIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTSLVYKGRSEAESLTAIVGTKQIFS 160
Query: 201 ---------SSYKLIILDEADAMTNDAQNALRR--------------------------- 224
++KLIILDEADAMT+ AQ ALRR
Sbjct: 161 TAPSSGSGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLS 220
Query: 225 --------------------------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAH 258
++ + PD +++ LS GDMR+ LN+LQ+ +
Sbjct: 221 RCTRFRFSPLKEKDIRRLVDTVIETEEVQIQPDAIDSLVKLSKGDMRRALNVLQACHASS 280
Query: 259 ---------ADE-------VNEDTVYNSVGYPTKTEITNILRWLLNES 290
A+E + E+T+Y + P +I IL LL+ S
Sbjct: 281 MPLPSKNDDANEQQQERETITEETIYTCIAAPHPADIKIILETLLSTS 328
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+Q +K KGLAL DI++ +S + LE+P + V + ++D+E+RL+ G SE IQ +
Sbjct: 337 VQTLKANKGLALADIISALSTELQSLEVPAQVRVSWIEGLADVEWRLSGGGSEVIQTGGM 396
Query: 516 IAAFNSA 522
I S
Sbjct: 397 IGVIRSG 403
>gi|68490447|ref|XP_710951.1| hypothetical protein CaO19.3211 [Candida albicans SC5314]
gi|46432214|gb|EAK91709.1| hypothetical protein CaO19.3211 [Candida albicans SC5314]
gi|238882781|gb|EEQ46419.1| activator 1 40 kDa subunit [Candida albicans WO-1]
Length = 361
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/153 (58%), Positives = 113/153 (73%), Gaps = 9/153 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +F++ +LPHLLFYGP GTGKT+TI+A A+++Y + M+LELNASDDRGI +VR+
Sbjct: 47 VRKFVETGKLPHLLFYGPSGTGKTSTIIALAKEIYGATNYKNMILELNASDDRGIDVVRN 106
Query: 357 QIFQFASTK---------TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII 407
QI FAST+ T + +KLIILDEADAMTN AQN+LRR+IEKFT N RFCI+
Sbjct: 107 QIKNFASTRQIFTKNTSQTASNNQFKLIILDEADAMTNVAQNSLRRVIEKFTKNCRFCIL 166
Query: 408 CNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
NY K+ PA+ SRCTRFRF P+D S I RL+
Sbjct: 167 ANYSHKLNPALISRCTRFRFTPIDISAIKDRLN 199
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 109/203 (53%), Gaps = 38/203 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFCI+ NY K+ PA+ SRCTRFRF P+D S I RL+ VI +E VN++P+
Sbjct: 154 IEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDRLNTVIIKENVNISPEA 213
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA----------HA-DEVNEDTIF------------- 96
A++ LS+GDMR+ LN+LQS A HA DE++ D I+
Sbjct: 214 IDALLKLSNGDMRRALNVLQSCKAALGDEEKEEDGHANDEIDVDMIYDCVGAPHPQDVET 273
Query: 97 ----------TLLVSRVEKYRP----STLDELVSHQDIISTIEIPESMLVDLVLKMSDIE 142
T + KY+ + +D + +I++ ++ ++++ +SDIE
Sbjct: 274 CLDSILKDDWTTAYLTLNKYKTIKGLALIDLITGFIEILNNYKLKPKTRLEILKGLSDIE 333
Query: 143 YRLAAGTSEKIQLSALIAAFNSA 165
Y ++ G ++KIQ SA+I A
Sbjct: 334 YGISKGGNDKIQTSAIIGVIKDA 356
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 122/274 (44%), Gaps = 85/274 (31%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
L SRVEKYRP +L+E+ Q+I+ T+ ++ + + L G S + S +
Sbjct: 22 LFSRVEKYRPDSLEEVKGQQEIVDTVR--------KFVETGKLPHLLFYGPSGTGKTSTI 73
Query: 159 IA----AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK---------TMHKSSYKL 205
IA + + K +LELNASDDRGI +VR+QI FAST+ T + +KL
Sbjct: 74 IALAKEIYGATNYKNMILELNASDDRGIDVVRNQIKNFASTRQIFTKNTSQTASNNQFKL 133
Query: 206 IILDEADAMTNDAQNALRR------------------------------KLPVTPDGKKA 235
IILDEADAMTN AQN+LRR + TP A
Sbjct: 134 IILDEADAMTNVAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISA 193
Query: 236 IID-----------------------LSDGDMRKVLNILQSAATA----------HA-DE 261
I D LS+GDMR+ LN+LQS A HA DE
Sbjct: 194 IKDRLNTVIIKENVNISPEAIDALLKLSNGDMRRALNVLQSCKAALGDEEKEEDGHANDE 253
Query: 262 VNEDTVYNSVGYPTKTEITNILRWLLNESMDLCY 295
++ D +Y+ VG P ++ L +L + Y
Sbjct: 254 IDVDMIYDCVGAPHPQDVETCLDSILKDDWTTAY 287
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y+ + + K KGLAL D++T +++ ++ ++++ +SDIEY ++ G ++KIQ
Sbjct: 287 YLTLNKYKTIKGLALIDLITGFIEILNNYKLKPKTRLEILKGLSDIEYGISKGGNDKIQT 346
Query: 513 SALIAAFNSA 522
SA+I A
Sbjct: 347 SAIIGVIKDA 356
>gi|328874863|gb|EGG23228.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 368
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 95/180 (52%), Positives = 125/180 (69%), Gaps = 4/180 (2%)
Query: 261 EVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKT 320
+ E +++S+ + K ++ + +E D+ I + ID+N LPHLLFYGPPGTGKT
Sbjct: 11 QTKEQRIHDSLPWVEKYRPKSLKELISHE--DIIDTITKLIDKNSLPHLLFYGPPGTGKT 68
Query: 321 TTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA-STKTMHKSSYKLIILDE 379
+TI A ARKLY ++ MVLELNASDDRGI +VR+QI FA S + + +KLIILDE
Sbjct: 69 STIQAVARKLYGD-NYSRMVLELNASDDRGIDVVREQIKSFAGSMGIFNTNQFKLIILDE 127
Query: 380 ADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
AD+MTN AQ ALRR+IE +T RFC+ICNY+ K+ PA+QSRCTRFRFG L + R+
Sbjct: 128 ADSMTNAAQTALRRVIETYTKTTRFCMICNYVGKLIPALQSRCTRFRFGRLGKPQSIKRI 187
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 106/226 (46%), Gaps = 60/226 (26%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEK------- 53
IE +T RFC+ICNY+ K+ PA+QSRCTRFRFG L + R+ ++EQEK
Sbjct: 143 IETYTKTTRFCMICNYVGKLIPALQSRCTRFRFGRLGKPQSIKRIKEIVEQEKYDIIMTD 202
Query: 54 -----------------------VNVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEV 90
+N++ + +I L++GDMRK LN+LQS + + D V
Sbjct: 203 KLPINIFQTHTDCPPIHSNVMFRMNISDEAITSIELLAEGDMRKSLNLLQSVSMSSDDGV 262
Query: 91 N---------------EDTIFTLL-------------VSRVEKYRPSTLDELVSHQDII- 121
+T+ L +S ++K + +L +++ ++
Sbjct: 263 QITDADIYRCAGVPSKRETVQILQWCIGEDFDEAYKNLSNMKKEKGFSLVDIIKDVSVLI 322
Query: 122 -STIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 166
+ E + + ++++IEY L+ G SEK+QL + AF SAR
Sbjct: 323 HKARNMDERAITSISKELAEIEYNLSFGASEKLQLGYFVGAFQSAR 368
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 75/123 (60%), Gaps = 6/123 (4%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP +L EL+SH+DII TI + L+D + + + GT + + A+
Sbjct: 24 VEKYRPKSLKELISHEDIIDTI----TKLIDKN-SLPHLLFYGPPGTGKTSTIQAVARKL 78
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFA-STKTMHKSSYKLIILDEADAMTNDAQNA 221
VLELNASDDRGI +VR+QI FA S + + +KLIILDEAD+MTN AQ A
Sbjct: 79 YGDNYSRMVLELNASDDRGIDVVREQIKSFAGSMGIFNTNQFKLIILDEADSMTNAAQTA 138
Query: 222 LRR 224
LRR
Sbjct: 139 LRR 141
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLE-IPESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
Y + +K EKG +L DI+ ++S+L+H+ + E + + ++++IEY L+ G SEK+Q
Sbjct: 297 YKNLSNMKKEKGFSLVDIIKDVSVLIHKARNMDERAITSISKELAEIEYNLSFGASEKLQ 356
Query: 512 LSALIAAFNSAR 523
L + AF SAR
Sbjct: 357 LGYFVGAFQSAR 368
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 239 LSDGDMRKVLNILQSAATAHAD--EVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYK 296
L++GDMRK LN+LQS + + D ++ + +Y G P+K E IL+W + E D YK
Sbjct: 239 LAEGDMRKSLNLLQSVSMSSDDGVQITDADIYRCAGVPSKRETVQILQWCIGEDFDEAYK 298
>gi|68067050|ref|XP_675496.1| replication factor C3 [Plasmodium berghei strain ANKA]
gi|56494714|emb|CAH95400.1| replication factor C3, putative [Plasmodium berghei]
Length = 329
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 165/299 (55%), Gaps = 70/299 (23%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I +F+++ ELPHLL +GPPGTGKT+TILA ++LY +++ ++ VLELNASDDRGI +VR+
Sbjct: 22 IRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGESR-SSFVLELNASDDRGITVVRE 80
Query: 357 QIFQFASTKTMH----KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
QI FA +K + ++S KLIILDEAD MT AQNA+RRI+E + NVRFC+ICNY++
Sbjct: 81 QIKTFAESKNHYNICERTSLKLIILDEADHMTFPAQNAMRRIMENYAKNVRFCLICNYVN 140
Query: 413 KIPPAIQSRCTRF----------------------------------RFGPLDSSLIMSR 438
KI PAIQSRCT F R G D I++
Sbjct: 141 KITPAIQSRCTSFRFSPLKEEYMLNKALDIAKSENVNLTKNGVESLIRVGRGDMRRILNC 200
Query: 439 LDYDDISFFNIII-------------------------------WYIKIQEIKIEKGLAL 467
L +S N++I Y I +++ +KG ++
Sbjct: 201 LQVVSLSHKNMVIDENVILSTLDIPLPTEIKFILEHLTKSTIKESYEIITKLQEDKGYSI 260
Query: 468 TDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKL 526
DI+ + V + P+S + L+ +IE R A+GT+E+I LS+LI+AF R++L
Sbjct: 261 KDIMICLYETVLTYDYPDSAICLLLKNFGEIEERCASGTTEQITLSSLISAFIEFRNEL 319
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 116/197 (58%), Gaps = 28/197 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + NVRFC+ICNY++KITPAIQSRCT FRF PL ++++ + + E VN+T +G
Sbjct: 123 MENYAKNVRFCLICNYVNKITPAIQSRCTSFRFSPLKEEYMLNKALDIAKSENVNLTKNG 182
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEV-NEDTIFTLL-------------------- 99
+++I + GDMR++LN LQ + +H + V +E+ I + L
Sbjct: 183 VESLIRVGRGDMRRILNCLQVVSLSHKNMVIDENVILSTLDIPLPTEIKFILEHLTKSTI 242
Query: 100 ------VSRVEKYRPSTL-DELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
++++++ + ++ D ++ + + T + P+S + L+ +IE R A+GT+E+
Sbjct: 243 KESYEIITKLQEDKGYSIKDIMICLYETVLTYDYPDSAICLLLKNFGEIEERCASGTTEQ 302
Query: 153 IQLSALIAAFNSARDKL 169
I LS+LI+AF R++L
Sbjct: 303 ITLSSLISAFIEFRNEL 319
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 124/257 (48%), Gaps = 71/257 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRPS L++++SH+ +ISTI ++ ++ + L G + S ++A
Sbjct: 1 VEKYRPSVLNDIISHEQVISTIR--------KFVEKGELPHLLLHGPPGTGKTSTILAVC 52
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH----KSSYKLIILDEADAM 214
+ +R VLELNASDDRGI +VR+QI FA +K + ++S KLIILDEAD M
Sbjct: 53 KELYGESRSSF-VLELNASDDRGITVVREQIKTFAESKNHYNICERTSLKLIILDEADHM 111
Query: 215 TNDAQNALRRKL-----------------PVTP--------------------------- 230
T AQNA+RR + +TP
Sbjct: 112 TFPAQNAMRRIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRFSPLKEEYMLNKALDIA 171
Query: 231 ---------DGKKAIIDLSDGDMRKVLNILQSAATAHADEV-NEDTVYNSVGYPTKTEIT 280
+G +++I + GDMR++LN LQ + +H + V +E+ + +++ P TEI
Sbjct: 172 KSENVNLTKNGVESLIRVGRGDMRRILNCLQVVSLSHKNMVIDENVILSTLDIPLPTEIK 231
Query: 281 NILRWLLNESMDLCYKI 297
IL L ++ Y+I
Sbjct: 232 FILEHLTKSTIKESYEI 248
>gi|401429678|ref|XP_003879321.1| putative replication factor C, subunit 3 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495571|emb|CBZ30876.1| putative replication factor C, subunit 3 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 364
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 90/166 (54%), Positives = 113/166 (68%), Gaps = 16/166 (9%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + +D +PHLL YGPPGTGKTTTI ACA LY K + A VLE+NASDDRGI
Sbjct: 36 DILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYLYGKDRVRANVLEMNASDDRGI 95
Query: 352 GIVRDQIFQFASTKTMH----------------KSSYKLIILDEADAMTNDAQNALRRII 395
+VR Q +FAST ++ + +KL+ILDEAD M+ DAQ ALRR+I
Sbjct: 96 DVVRQQTREFASTSSIFSMMGSGSSTGSGGGGPAAKFKLVILDEADQMSYDAQAALRRVI 155
Query: 396 EKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
EK+T NVRFCI+CN+++KI PA+QSRCTRFRF P+ S +M RL Y
Sbjct: 156 EKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMMPRLRY 201
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 108/190 (56%), Gaps = 28/190 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCI+CN+++KI PA+QSRCTRFRF P+ S +M RL YV EQE V T DG
Sbjct: 155 IEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMMPRLRYVAEQEGVKYTTDG 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF-----------TLLVSRVE----- 104
A LS GD+R+ LN +QS+A + A+E+ E++++ T +VS +
Sbjct: 215 LAAAFRLSRGDLRRCLNTMQSSALS-ANEITEESVYRVTGNPTPADVTAIVSDMLSSDFA 273
Query: 105 ----KYRPSTLDELVSHQD-------IISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
K L + +S D I+ +++P+ L++K+SD+EY A G E
Sbjct: 274 TSWIKVEEGVLQKGISMADLTREIHPIMMAMDLPQDCKCFLLMKLSDLEYYAAGGARESA 333
Query: 154 QLSALIAAFN 163
L L+ AF
Sbjct: 334 GLGGLLGAFQ 343
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 122/257 (47%), Gaps = 78/257 (30%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRPSTL+ +V+H+DI+ST+ L+D M + GT + + A A +
Sbjct: 20 VEKYRPSTLESVVAHEDILSTLR----HLMD-SGNMPHLLLYGPPGTGKTTTIKA-CAYY 73
Query: 163 NSARDKLE--VLELNASDDRGIGIVRDQIFQFASTKTMH----------------KSSYK 204
+D++ VLE+NASDDRGI +VR Q +FAST ++ + +K
Sbjct: 74 LYGKDRVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGSGSSTGSGGGGPAAKFK 133
Query: 205 LIILDEADAMTNDAQNALRRKL---------------------------------PV--- 228
L+ILDEAD M+ DAQ ALRR + PV
Sbjct: 134 LVILDEADQMSYDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKS 193
Query: 229 -----------------TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSV 271
T DG A LS GD+R+ LN +QS+A + A+E+ E++VY
Sbjct: 194 AMMPRLRYVAEQEGVKYTTDGLAAAFRLSRGDLRRCLNTMQSSALS-ANEITEESVYRVT 252
Query: 272 GYPTKTEITNILRWLLN 288
G PT ++T I+ +L+
Sbjct: 253 GNPTPADVTAIVSDMLS 269
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488
P D + I+S + D + +IK++E ++KG+++ D+ EI ++ +++P+
Sbjct: 257 PADVTAIVSDMLSSDFA-----TSWIKVEEGVLQKGISMADLTREIHPIMMAMDLPQDCK 311
Query: 489 VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 520
L++K+SD+EY A G E L L+ AF
Sbjct: 312 CFLLMKLSDLEYYAAGGARESAGLGGLLGAFQ 343
>gi|302501939|ref|XP_003012961.1| hypothetical protein ARB_00844 [Arthroderma benhamiae CBS 112371]
gi|291176522|gb|EFE32321.1| hypothetical protein ARB_00844 [Arthroderma benhamiae CBS 112371]
Length = 417
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 93/168 (55%), Positives = 109/168 (64%), Gaps = 29/168 (17%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRF+D N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 64 DIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGI 123
Query: 352 GIVRDQIFQFASTKTMHK-----------------------------SSYKLIILDEADA 382
+VR+QI FAST ++K ++KLIILDEADA
Sbjct: 124 DVVREQIKTFASTSLVYKGRSEAESLTAIIVGTKQIFSTAPSSGSGLGAFKLIILDEADA 183
Query: 383 MTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
MT+ AQ ALRRI+EK+T N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 184 MTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPL 231
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 104/209 (49%), Gaps = 44/209 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VIE+E+V + PD
Sbjct: 196 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRRLVDTVIEKEEVQIQPDA 255
Query: 61 KKAIIDLSDGDMRKVLNILQS---------AATAHADE-------VNEDTIFTLLVSRVE 104
+++ LS GDMR+ LN+LQ+ + A+E + E+TI+T + +
Sbjct: 256 IDSLVKLSKGDMRRALNVLQACHASSMPLPSKNGDANEQQQERETITEETIYTCIAAPHP 315
Query: 105 KYRPSTLDELVSHQDIIS----------------------------TIEIPESMLVDLVL 136
L+ L+S D+ S ++E+P + V +
Sbjct: 316 ADIKIILETLLSTSDVTSCLNTVQTLKANKGLALADIISALSTELQSLEVPAQVRVSWIE 375
Query: 137 KMSDIEYRLAAGTSEKIQLSALIAAFNSA 165
++D+E+RL+ G SE IQ +I S
Sbjct: 376 GLADVEWRLSGGGSEVIQTGGMIGVIRSG 404
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 122/289 (42%), Gaps = 108/289 (37%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD++ HQDII+TI + + L L+L GT + + AL
Sbjct: 48 VEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYG-------PPGTGKTSTILALAR 100
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK------------------- 200
+++ + VLELNASDDRGI +VR+QI FAST ++K
Sbjct: 101 RIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTSLVYKGRSEAESLTAIIVGTKQIF 160
Query: 201 ----------SSYKLIILDEADAMTNDAQNALRR-------------------------- 224
++KLIILDEADAMT+ AQ ALRR
Sbjct: 161 STAPSSGSGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALL 220
Query: 225 ---------------------------KLPVTPDGKKAIIDLSDGDMRKVLNILQS---- 253
++ + PD +++ LS GDMR+ LN+LQ+
Sbjct: 221 SRCTRFRFSPLKEKDIRRLVDTVIEKEEVQIQPDAIDSLVKLSKGDMRRALNVLQACHAS 280
Query: 254 -----AATAHADE-------VNEDTVYNSVGYPTKTEITNILRWLLNES 290
+ A+E + E+T+Y + P +I IL LL+ S
Sbjct: 281 SMPLPSKNGDANEQQQERETITEETIYTCIAAPHPADIKIILETLLSTS 329
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+Q +K KGLAL DI++ +S + LE+P + V + ++D+E+RL+ G SE IQ +
Sbjct: 338 VQTLKANKGLALADIISALSTELQSLEVPAQVRVSWIEGLADVEWRLSGGGSEVIQTGGM 397
Query: 516 IAAFNSA 522
I S
Sbjct: 398 IGVIRSG 404
>gi|146101518|ref|XP_001469135.1| putative replication factor C, subunit 3 [Leishmania infantum
JPCM5]
gi|398023497|ref|XP_003864910.1| replication factor C, subunit 3, putative [Leishmania donovani]
gi|134073504|emb|CAM72235.1| putative replication factor C, subunit 3 [Leishmania infantum
JPCM5]
gi|322503146|emb|CBZ38230.1| replication factor C, subunit 3, putative [Leishmania donovani]
Length = 364
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 89/166 (53%), Positives = 114/166 (68%), Gaps = 16/166 (9%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + +D +PHLL YGPPGTGKTTTI ACA LY K + A VLE+NASDDRGI
Sbjct: 36 DILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYLYGKDRVRANVLEMNASDDRGI 95
Query: 352 GIVRDQIFQFASTKTMH----------------KSSYKLIILDEADAMTNDAQNALRRII 395
+VR Q +FAST ++ + +KL+ILDEAD M++DAQ ALRR+I
Sbjct: 96 DVVRQQTREFASTSSIFSMMGSGSSTGGGSGGPAAKFKLVILDEADQMSHDAQAALRRVI 155
Query: 396 EKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
EK+T NVRFCI+CN+++KI PA+QSRCTRFRF P+ S +M RL +
Sbjct: 156 EKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMMPRLRF 201
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 109/190 (57%), Gaps = 28/190 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCI+CN+++KI PA+QSRCTRFRF P+ S +M RL +V EQE V T DG
Sbjct: 155 IEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMMPRLRFVAEQEGVKYTTDG 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF-----------TLLVSRVE----- 104
A LS GD+R+ LN +Q++A + A+EV E++++ T +VS +
Sbjct: 215 LAAAFRLSHGDLRRCLNTMQASALS-ANEVTEESVYRVTGNPTPADVTAIVSDMLSSDFA 273
Query: 105 ----KYRPSTLDELVSHQD-------IISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
K S + + +S D ++ +++P+ L++K+SD+EY A G E
Sbjct: 274 TSWIKVEESVVQKGISIADLTREIHPVMMAMDLPQDCKCFLLMKLSDLEYYAAGGARESA 333
Query: 154 QLSALIAAFN 163
L L+ AF
Sbjct: 334 GLGGLLGAFQ 343
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 123/257 (47%), Gaps = 78/257 (30%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRPSTL+ +V+H+DI+ST+ L+D M + GT + + A A +
Sbjct: 20 VEKYRPSTLESVVAHEDILSTLR----HLMD-SGNMPHLLLYGPPGTGKTTTIKA-CAYY 73
Query: 163 NSARDKLE--VLELNASDDRGIGIVRDQIFQFASTKTMH----------------KSSYK 204
+D++ VLE+NASDDRGI +VR Q +FAST ++ + +K
Sbjct: 74 LYGKDRVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGSGSSTGGGSGGPAAKFK 133
Query: 205 LIILDEADAMTNDAQNALRRKL---------------------------------PV--- 228
L+ILDEAD M++DAQ ALRR + PV
Sbjct: 134 LVILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKS 193
Query: 229 -----------------TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSV 271
T DG A LS GD+R+ LN +Q++A + A+EV E++VY
Sbjct: 194 AMMPRLRFVAEQEGVKYTTDGLAAAFRLSHGDLRRCLNTMQASALS-ANEVTEESVYRVT 252
Query: 272 GYPTKTEITNILRWLLN 288
G PT ++T I+ +L+
Sbjct: 253 GNPTPADVTAIVSDMLS 269
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488
P D + I+S + D + +IK++E ++KG+++ D+ EI ++ +++P+
Sbjct: 257 PADVTAIVSDMLSSDFA-----TSWIKVEESVVQKGISIADLTREIHPVMMAMDLPQDCK 311
Query: 489 VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 520
L++K+SD+EY A G E L L+ AF
Sbjct: 312 CFLLMKLSDLEYYAAGGARESAGLGGLLGAFQ 343
>gi|330801691|ref|XP_003288858.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
gi|325081104|gb|EGC34633.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
Length = 348
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 93/138 (67%), Positives = 107/138 (77%), Gaps = 3/138 (2%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS 363
N LPHLLFYGPPGTGKT+TI A ARKLY + ++ MVLELNASDDRGI +VR+QI FAS
Sbjct: 53 NTLPHLLFYGPPGTGKTSTIQAIARKLYGE-NYSRMVLELNASDDRGIDVVREQIKTFAS 111
Query: 364 TKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSR 421
+ S+ YKLIILDEAD+MTN AQ ALRR+IEK+T RFCI+CNY+ KI PA+QSR
Sbjct: 112 SMFFFNSTVPYKLIILDEADSMTNIAQTALRRVIEKYTKTTRFCIVCNYVVKIIPALQSR 171
Query: 422 CTRFRFGPLDSSLIMSRL 439
CTRFRF PL S RL
Sbjct: 172 CTRFRFKPLPDSATEERL 189
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 108/195 (55%), Gaps = 28/195 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T RFCI+CNY+ KI PA+QSRCTRFRF PL S RL +++ E V + +G
Sbjct: 145 IEKYTKTTRFCIVCNYVVKIIPALQSRCTRFRFKPLPDSATEERLKEILKIENVQIDEEG 204
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL--------------------- 99
KA++ L DGDMRK LNILQS + + + E+ I+
Sbjct: 205 MKAVLFLGDGDMRKSLNILQSVSMSTNGLIGEEQIYKCTGNPSPTDFHMVLEWLFNEDFQ 264
Query: 100 -----VSRVEKYRPSTLDELVSH--QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
++ ++K + +L +++S+ ++ ++P +L + +SDIE+ L+ G SEK
Sbjct: 265 TAFNNITDLKKKKGLSLTDIISYFPHFLMEMDDMPSILLCKALSHLSDIEFNLSNGASEK 324
Query: 153 IQLSALIAAFNSARD 167
+QL +L+ +F +D
Sbjct: 325 LQLGSLVGSFQILKD 339
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 115/248 (46%), Gaps = 65/248 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP ++++L++H DII+T + L L+ + GT + + A+
Sbjct: 30 VEKYRPKSINDLIAHDDIIAT---KSNTLPHLL-------FYGPPGTGKTSTIQAIARKL 79
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS--YKLIILDEADAMTNDAQN 220
VLELNASDDRGI +VR+QI FAS+ S+ YKLIILDEAD+MTN AQ
Sbjct: 80 YGENYSRMVLELNASDDRGIDVVREQIKTFASSMFFFNSTVPYKLIILDEADSMTNIAQT 139
Query: 221 ALRR-----------------------------------KLP------------------ 227
ALRR LP
Sbjct: 140 ALRRVIEKYTKTTRFCIVCNYVVKIIPALQSRCTRFRFKPLPDSATEERLKEILKIENVQ 199
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+ +G KA++ L DGDMRK LNILQS + + + E+ +Y G P+ T+ +L WL
Sbjct: 200 IDEEGMKAVLFLGDGDMRKSLNILQSVSMSTNGLIGEEQIYKCTGNPSPTDFHMVLEWLF 259
Query: 288 NESMDLCY 295
NE +
Sbjct: 260 NEDFQTAF 267
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 429 PLDSSLIMSRLDYDDI-SFFNIIIWYIKIQEIKIEKGLALTDILTEI-SLLVHRLEIPES 486
P D +++ L +D + FN I ++K +KGL+LTDI++ L+ ++P
Sbjct: 248 PTDFHMVLEWLFNEDFQTAFN------NITDLKKKKGLSLTDIISYFPHFLMEMDDMPSI 301
Query: 487 MLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
+L + +SDIE+ L+ G SEK+QL +L+ +F +D
Sbjct: 302 LLCKALSHLSDIEFNLSNGASEKLQLGSLVGSFQILKD 339
>gi|124810138|ref|XP_001348775.1| replication factor C3 [Plasmodium falciparum 3D7]
gi|11559500|gb|AAG37985.1|AF069296_1 replication factor C3 [Plasmodium falciparum]
gi|23497675|gb|AAN37214.1|AE014826_13 replication factor C3 [Plasmodium falciparum 3D7]
Length = 344
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 159/299 (53%), Gaps = 70/299 (23%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I RF+ + ELPHLL +GPPGTGKT+TILA ++LY + ++ VLELNASDDRGI ++RD
Sbjct: 37 IKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGDKR-SSFVLELNASDDRGINVIRD 95
Query: 357 QIFQFASTK----TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
QI FA +K T K++ KLIILDEAD MT AQNA+RRI+E + NVRFC++CNY++
Sbjct: 96 QIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVN 155
Query: 413 KIPPAIQSRCTRF----------------------------------RFGPLDSSLIMSR 438
KI PAIQSRCT F R G D I++
Sbjct: 156 KITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVNLTEGGIDSLIRVGHGDMRRILNC 215
Query: 439 LDYDDISFFNIII----------------------WYIK---------IQEIKIEKGLAL 467
L +S N++I ++ K + ++ +KG +
Sbjct: 216 LQVVSLSHKNLVIDENVILSTLDIPLPSETKKILEYFTKGSIKESYEFVSNLQYDKGYST 275
Query: 468 TDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKL 526
DI+ + V + P+S L+ +IE R ++G SE+I LSALI+AF R +L
Sbjct: 276 KDIMMCLYESVLTYDFPDSAFCLLLKNFGEIEERCSSGASEQITLSALISAFVEFRTEL 334
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 28/206 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + NVRFC++CNY++KITPAIQSRCT FRF PL + ++ + + E VN+T G
Sbjct: 138 MENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVNLTEGG 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEV-NEDTIFTLL-------------------- 99
++I + GDMR++LN LQ + +H + V +E+ I + L
Sbjct: 198 IDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTLDIPLPSETKKILEYFTKGSI 257
Query: 100 ------VSRVEKYRP-STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
VS ++ + ST D ++ + + T + P+S L+ +IE R ++G SE+
Sbjct: 258 KESYEFVSNLQYDKGYSTKDIMMCLYESVLTYDFPDSAFCLLLKNFGEIEERCSSGASEQ 317
Query: 153 IQLSALIAAFNSARDKLEVLELNASD 178
I LSALI+AF R +L L+ + S+
Sbjct: 318 ITLSALISAFVEFRTELFKLKYDMSN 343
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 120/259 (46%), Gaps = 67/259 (25%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
L VEKYRP+ L++++SH+ +ISTI+ + + L L+L GT + +
Sbjct: 12 LTPWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHG-------PPGTGKTSTIL 64
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK----TMHKSSYKLIILDEAD 212
A+ + VLELNASDDRGI ++RDQI FA +K T K++ KLIILDEAD
Sbjct: 65 AVCKELYGDKRSSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEAD 124
Query: 213 AMTNDAQNALRRKL-----------------PVTP------------------------- 230
MT AQNA+RR + +TP
Sbjct: 125 HMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALD 184
Query: 231 -----------DGKKAIIDLSDGDMRKVLNILQSAATAHADEV-NEDTVYNSVGYPTKTE 278
G ++I + GDMR++LN LQ + +H + V +E+ + +++ P +E
Sbjct: 185 IAKSENVNLTEGGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTLDIPLPSE 244
Query: 279 ITNILRWLLNESMDLCYKI 297
IL + S+ Y+
Sbjct: 245 TKKILEYFTKGSIKESYEF 263
>gi|308800034|ref|XP_003074798.1| rfc5 replication factor C subunit 5 (36kDa), probable (IC)
[Ostreococcus tauri]
gi|119358795|emb|CAL52056.2| rfc5 replication factor C subunit 5 (36kDa), probable (IC)
[Ostreococcus tauri]
Length = 341
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/145 (59%), Positives = 108/145 (74%), Gaps = 1/145 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I +F LPHLLF+GPPGTGKT+T+LA R+LY N MVLELNASD RGI IVRD
Sbjct: 39 IRKFAANGRLPHLLFHGPPGTGKTSTVLALTRELYESNHSN-MVLELNASDSRGINIVRD 97
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
+I FAST S++KL+I+DE D++T DAQ ALRRI+EK+ + RFC+ICNY SKI P
Sbjct: 98 EIQSFASTARPFSSAFKLVIMDECDSLTKDAQFALRRIMEKYAQHTRFCLICNYASKIIP 157
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
AIQSRCT+FRF P+ + ++ RL +
Sbjct: 158 AIQSRCTKFRFAPVPAEAMLQRLRH 182
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 105/197 (53%), Gaps = 30/197 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+ + RFC+ICNY SKI PAIQSRCT+FRF P+ + ++ RL +V+ E+V ++
Sbjct: 136 MEKYAQHTRFCLICNYASKIIPAIQSRCTKFRFAPVPAEAMLQRLRHVVCSERVQISGAS 195
Query: 61 KKAIIDLSDGDMRKVLNILQS---------AATAHADE--VNEDTIFTLLVSRVEKYRPS 109
+ I L +GDMR+ LN+LQS +AT HA ++ + L EK S
Sbjct: 196 LQTIQRLGEGDMRRSLNVLQSLHLASTKITSATIHATTGLLDRCEVLEFLQVLFEKPMKS 255
Query: 110 TLDEL--------VSHQDIISTIEIPESML---------VDLVLKMSDIEYRLAAGTSEK 152
L+ L + D+I E+ E++ L+ ++D+E+ L+ +SEK
Sbjct: 256 ILNHLYRLKLEKSFALTDLIK--EMSETLFSLHMSVQVRSQLLKGLADVEHALSFTSSEK 313
Query: 153 IQLSALIAAFNSARDKL 169
IQ +LI+ F R L
Sbjct: 314 IQTLSLISIFLHVRRTL 330
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 105/241 (43%), Gaps = 59/241 (24%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP L E+V+H+ II I + ++ + + GT + + AL
Sbjct: 19 EKYRPLNLSEVVAHETIIDVIRKFAANG-----RLPHLLFHGPPGTGKTSTVLALTRELY 73
Query: 164 SARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALR 223
+ VLELNASD RGI IVRD+I FAST S++KL+I+DE D++T DAQ ALR
Sbjct: 74 ESNHSNMVLELNASDSRGINIVRDEIQSFASTARPFSSAFKLVIMDECDSLTKDAQFALR 133
Query: 224 R------------------------------KLPVTPDGKKAIID--------------- 238
R K P +A++
Sbjct: 134 RIMEKYAQHTRFCLICNYASKIIPAIQSRCTKFRFAPVPAEAMLQRLRHVVCSERVQISG 193
Query: 239 --------LSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNES 290
L +GDMR+ LN+LQS A + ++ T++ + G + E+ L+ L +
Sbjct: 194 ASLQTIQRLGEGDMRRSLNVLQSLHLA-STKITSATIHATTGLLDRCEVLEFLQVLFEKP 252
Query: 291 M 291
M
Sbjct: 253 M 253
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 459 IKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 518
+K+EK ALTD++ E+S + L + + L+ ++D+E+ L+ +SEKIQ +LI+
Sbjct: 263 LKLEKSFALTDLIKEMSETLFSLHMSVQVRSQLLKGLADVEHALSFTSSEKIQTLSLISI 322
Query: 519 FNSARDKL 526
F R L
Sbjct: 323 FLHVRRTL 330
>gi|402080324|gb|EJT75469.1| replication factor C subunit 3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 410
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 107/170 (62%), Gaps = 31/170 (18%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ IN+F+D N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 61 DILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGADNMRQMVLELNASDDRGI 120
Query: 352 GIVRDQIFQFASTKTMHKSS-------------------------------YKLIILDEA 380
+VR+QI FASTK + YKLIILDEA
Sbjct: 121 DVVREQIKTFASTKQIFSMGPRNTAAAAAAAPSSSSSSAPSAARTGSTMALYKLIILDEA 180
Query: 381 DAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
DAMTN AQ ALRRI+EK+T N RFCII NY K+ PA+ SRCTRFRF PL
Sbjct: 181 DAMTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPL 230
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 46/206 (22%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL + I +D V+++E VNV P+
Sbjct: 195 MEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEADIRVLVDRVVDEESVNVVPEA 254
Query: 61 KKAIIDLSDGDMRKVLNILQSA-------------ATAHADEVNED-----TIFTLLVSR 102
A++ LS GDMR+ LN+LQ+ A D V D +I++ + +
Sbjct: 255 VDALVRLSRGDMRRALNVLQACHASSTPLRERGAKAPGPGDAVARDVVTVESIYSCIAAP 314
Query: 103 VEKYRPSTLDELVSHQDIIST----------------------------IEIPESMLVDL 134
L L+ D++ +E+ +++
Sbjct: 315 PPDAVAEILKTLLGTADVVQCLGTINALKASRGLALADIITALSEEVVKLEVKPEVMIRW 374
Query: 135 VLKMSDIEYRLAAGTSEKIQLSALIA 160
+ ++ IE+R+A G SE +Q A++
Sbjct: 375 LDGLAQIEHRVAGGASETVQTGAVVG 400
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 77/156 (49%), Gaps = 41/156 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +L ++ HQDI++TI + + L L+L GT + + AL
Sbjct: 45 VEKYRPVSLADVSGHQDILATINKFVDSNRLPHLLLYGP-------PGTGKTSTILALAR 97
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------------- 202
A + + VLELNASDDRGI +VR+QI FASTK +
Sbjct: 98 RIYGADNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMGPRNTAAAAAAAPSSSSS 157
Query: 203 --------------YKLIILDEADAMTNDAQNALRR 224
YKLIILDEADAMTN AQ ALRR
Sbjct: 158 SAPSAARTGSTMALYKLIILDEADAMTNTAQMALRR 193
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
I +K +GLAL DI+T +S V +LE+ +++ + ++ IE+R+A G SE +Q A+
Sbjct: 339 INALKASRGLALADIITALSEEVVKLEVKPEVMIRWLDGLAQIEHRVAGGASETVQTGAV 398
Query: 516 IA 517
+
Sbjct: 399 VG 400
>gi|389585221|dbj|GAB67952.1| replication factor C3 [Plasmodium cynomolgi strain B]
Length = 344
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/146 (59%), Positives = 114/146 (78%), Gaps = 5/146 (3%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I +F+++ ELPHLL +GPPGTGKT+TILA ++LY +++ ++ VLELNASDDRGI +VRD
Sbjct: 37 IQKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGESR-SSFVLELNASDDRGISVVRD 95
Query: 357 QIFQFASTK----TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
QI FA +K T K+S KLIILDEAD MT AQNA+RRI+E + NVRFC++CNY++
Sbjct: 96 QIKTFAESKNHYNTCEKTSLKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVN 155
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSR 438
KI PAIQSRCT FRF PL ++++
Sbjct: 156 KITPAIQSRCTSFRFSPLKKEYMINK 181
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 112/197 (56%), Gaps = 28/197 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + NVRFC++CNY++KITPAIQSRCT FRF PL ++++ + + E V++T DG
Sbjct: 138 MENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMINKALDIAKSENVDLTKDG 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTIFTLL--------VSRVEKYRPSTL 111
+++I + GDMR++LN LQ + +H + ++++ I + L +E + ST+
Sbjct: 198 LESLIRVGRGDMRRILNCLQVVSLSHKNMTIDQNVILSTLDIPLPEEVKDILEHFTKSTI 257
Query: 112 DE-------------------LVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
E +V+ + I T + P+S + L+ +IE R ++G +E+
Sbjct: 258 KESYEFVTKLQSTKGYSIKDIMVNLYESILTYDFPDSAVCLLLKSFGEIEERCSSGANEQ 317
Query: 153 IQLSALIAAFNSARDKL 169
I LSALI+AF R +L
Sbjct: 318 ITLSALISAFIEFRTEL 334
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 124/260 (47%), Gaps = 71/260 (27%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
L VEKYRP+ L++++SH+ +ISTI+ ++ ++ + L G + S +
Sbjct: 12 LTPWVEKYRPNVLNDIISHEQVISTIQ--------KFVEKGELPHLLLHGPPGTGKTSTI 63
Query: 159 IAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK----TMHKSSYKLIILDE 210
+A + +R VLELNASDDRGI +VRDQI FA +K T K+S KLIILDE
Sbjct: 64 LAVCKELYGESRSSF-VLELNASDDRGISVVRDQIKTFAESKNHYNTCEKTSLKLIILDE 122
Query: 211 ADAMTNDAQNALRRKL-----------------PVTP----------------------- 230
AD MT AQNA+RR + +TP
Sbjct: 123 ADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMINKA 182
Query: 231 -------------DGKKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTVYNSVGYPTK 276
DG +++I + GDMR++LN LQ + +H + ++++ + +++ P
Sbjct: 183 LDIAKSENVDLTKDGLESLIRVGRGDMRRILNCLQVVSLSHKNMTIDQNVILSTLDIPLP 242
Query: 277 TEITNILRWLLNESMDLCYK 296
E+ +IL ++ Y+
Sbjct: 243 EEVKDILEHFTKSTIKESYE 262
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y + +++ KG ++ DI+ + + + P+S + L+ +IE R ++G +E+I L
Sbjct: 261 YEFVTKLQSTKGYSIKDIMVNLYESILTYDFPDSAVCLLLKSFGEIEERCSSGANEQITL 320
Query: 513 SALIAAFNSARDKL 526
SALI+AF R +L
Sbjct: 321 SALISAFIEFRTEL 334
>gi|291002133|ref|XP_002683633.1| predicted protein [Naegleria gruberi]
gi|284097262|gb|EFC50889.1| predicted protein [Naegleria gruberi]
Length = 351
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 113/152 (74%), Gaps = 9/152 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I R ID +LPHLL YGPPGTGKT+T+LA A+KL+ + VLELNASDDRGI ++R+
Sbjct: 36 IQRLIDGGKLPHLLLYGPPGTGKTSTVLAIAKKLFGN-RLTQNVLELNASDDRGIDVIRN 94
Query: 357 QIFQFASTK-----TMHKSS---YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
+I FASTK T K + KLIILDEAD MT DAQ ALRR IEK++ NVRFC+IC
Sbjct: 95 EIKDFASTKGLKFFTAQKDTTPDIKLIILDEADQMTKDAQAALRRTIEKYSKNVRFCLIC 154
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
NY++KI PA+QSRCTRFRF PL ++SRL+
Sbjct: 155 NYVNKIIPALQSRCTRFRFSPLKKHEVVSRLE 186
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 110/194 (56%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK++ NVRFC+ICNY++KI PA+QSRCTRFRF PL ++SRL+ + ++E V G
Sbjct: 141 IEKYSKNVRFCLICNYVNKIIPALQSRCTRFRFSPLKKHEVVSRLEEICKEENVIYNQVG 200
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------------------LV 100
AI LS+GDMRK +NILQS + ++ ED + L
Sbjct: 201 LDAIYRLSNGDMRKCVNILQSTFMSFG-QITEDNVHMCTGNPLKEDIRLIINSLFNDSLA 259
Query: 101 SRVEKYRPSTLDELVSHQDIISTIE-------IPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+K + ++ QDI+ I IP ++ + L+ KMSDIEYRL+ GTSE +
Sbjct: 260 DAYKKVMNIKTERGLALQDILRDIHPYVMKLNIPIAVRIYLLEKMSDIEYRLSLGTSESL 319
Query: 154 QLSALIAAFNSARD 167
Q ALI+AF A++
Sbjct: 320 QTMALISAFQIAKE 333
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 117/255 (45%), Gaps = 67/255 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP L +L+SH +IISTI+ L+D K+ + GT + + A+
Sbjct: 15 IEKYRPHELTDLLSHTEIISTIQ----RLIDGG-KLPHLLLYGPPGTGKTSTVLAIAKKL 69
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-----TMHKSS---YKLIILDEADAM 214
R VLELNASDDRGI ++R++I FASTK T K + KLIILDEAD M
Sbjct: 70 FGNRLTQNVLELNASDDRGIDVIRNEIKDFASTKGLKFFTAQKDTTPDIKLIILDEADQM 129
Query: 215 TNDAQNALRR------------------------------KLPVTPDGKKAIID------ 238
T DAQ ALRR + +P K ++
Sbjct: 130 TKDAQAALRRTIEKYSKNVRFCLICNYVNKIIPALQSRCTRFRFSPLKKHEVVSRLEEIC 189
Query: 239 -----------------LSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITN 281
LS+GDMRK +NILQS + ++ ED V+ G P K +I
Sbjct: 190 KEENVIYNQVGLDAIYRLSNGDMRKCVNILQSTFMSFG-QITEDNVHMCTGNPLKEDIRL 248
Query: 282 ILRWLLNESMDLCYK 296
I+ L N+S+ YK
Sbjct: 249 IINSLFNDSLADAYK 263
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y K+ IK E+GLAL DIL +I V +L IP ++ + L+ KMSDIEYRL+ GTSE +Q
Sbjct: 262 YKKVMNIKTERGLALQDILRDIHPYVMKLNIPIAVRIYLLEKMSDIEYRLSLGTSESLQT 321
Query: 513 SALIAAFNSARDKLEA 528
ALI+AF A++ + +
Sbjct: 322 MALISAFQIAKEPVSS 337
>gi|156100055|ref|XP_001615755.1| replication factor C3 [Plasmodium vivax Sal-1]
gi|148804629|gb|EDL46028.1| replication factor C3, putative [Plasmodium vivax]
Length = 344
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/146 (58%), Positives = 114/146 (78%), Gaps = 5/146 (3%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I +F+++ ELPHLL +GPPGTGKT+TILA ++LY +++ ++ VLELNASDDRGI +VRD
Sbjct: 37 IQKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGESR-SSFVLELNASDDRGISVVRD 95
Query: 357 QIFQFASTK----TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
QI FA +K T K++ KLIILDEAD MT AQNA+RRI+E + NVRFC++CNY++
Sbjct: 96 QIKTFAESKNHYNTCEKTTLKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVN 155
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSR 438
KI PAIQSRCT FRF PL ++++
Sbjct: 156 KITPAIQSRCTSFRFSPLKKEYMVNK 181
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 110/197 (55%), Gaps = 28/197 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + NVRFC++CNY++KITPAIQSRCT FRF PL ++++ + + E V++T DG
Sbjct: 138 MENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMVNKALDIAKSENVDLTQDG 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTIFTLL--------VSRVEKYRPSTL 111
+++I + GDMR++LN LQ + +H + ++++ I + L +E ST+
Sbjct: 198 LESLIRVGRGDMRRILNCLQVVSLSHKNMTIDQNVILSTLDIPLPEEVKDILEHLTKSTI 257
Query: 112 DE-------------------LVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
E +V+ + I T + P+S + L+ +IE R + G +E+
Sbjct: 258 KESYEFVTKLQCSKGYSIKDIMVNLYESILTYDFPDSAVCLLLKNFGEIEERCSTGANEQ 317
Query: 153 IQLSALIAAFNSARDKL 169
I LSALI+AF R +L
Sbjct: 318 ITLSALISAFIEFRAEL 334
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 125/260 (48%), Gaps = 71/260 (27%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
L VEKYRP+ L++++SH+ +ISTI+ ++ ++ + L G + S +
Sbjct: 12 LTPWVEKYRPNVLNDIISHEQVISTIQ--------KFVEKGELPHLLLHGPPGTGKTSTI 63
Query: 159 IAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK----TMHKSSYKLIILDE 210
+A + +R VLELNASDDRGI +VRDQI FA +K T K++ KLIILDE
Sbjct: 64 LAVCKELYGESRSSF-VLELNASDDRGISVVRDQIKTFAESKNHYNTCEKTTLKLIILDE 122
Query: 211 ADAMTNDAQNALRRKL-----------------PVTP----------------------- 230
AD MT AQNA+RR + +TP
Sbjct: 123 ADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMVNKA 182
Query: 231 -------------DGKKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTVYNSVGYPTK 276
DG +++I + GDMR++LN LQ + +H + ++++ + +++ P
Sbjct: 183 LDIAKSENVDLTQDGLESLIRVGRGDMRRILNCLQVVSLSHKNMTIDQNVILSTLDIPLP 242
Query: 277 TEITNILRWLLNESMDLCYK 296
E+ +IL L ++ Y+
Sbjct: 243 EEVKDILEHLTKSTIKESYE 262
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y + +++ KG ++ DI+ + + + P+S + L+ +IE R + G +E+I L
Sbjct: 261 YEFVTKLQCSKGYSIKDIMVNLYESILTYDFPDSAVCLLLKNFGEIEERCSTGANEQITL 320
Query: 513 SALIAAFNSARDKL 526
SALI+AF R +L
Sbjct: 321 SALISAFIEFRAEL 334
>gi|154344961|ref|XP_001568422.1| putative replication factor C, subunit 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065759|emb|CAM43533.1| putative replication factor C, subunit 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 364
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/166 (53%), Positives = 113/166 (68%), Gaps = 16/166 (9%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + ++ +PHLL YGPPGTGKTTTI ACA LY K + A VLE+NASDDRGI
Sbjct: 36 DILSTLRHLMNSGNMPHLLLYGPPGTGKTTTIKACAYYLYGKDRVRANVLEMNASDDRGI 95
Query: 352 GIVRDQIFQFASTKTMHKS----------------SYKLIILDEADAMTNDAQNALRRII 395
+VR Q +FAST ++ +KL+ILDEAD M++DAQ ALRR+I
Sbjct: 96 DVVRQQTREFASTTSIFSVMGSSSSTGSGSGGSAVKFKLVILDEADQMSHDAQAALRRVI 155
Query: 396 EKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
EK+T NVRFC++CN+++KI PA+QSRCTRFRF P+ S +M RL Y
Sbjct: 156 EKYTRNVRFCLLCNHINKIIPALQSRCTRFRFAPVKKSAMMPRLRY 201
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 105/194 (54%), Gaps = 36/194 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFC++CN+++KI PA+QSRCTRFRF P+ S +M RL YV E E V T DG
Sbjct: 155 IEKYTRNVRFCLLCNHINKIIPALQSRCTRFRFAPVKKSAMMPRLRYVAEHEGVKYTTDG 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
A LS GD+R+ LN +Q++A + A+E+ E++++ + + P+ + +VSH
Sbjct: 215 LAAAYRLSQGDLRRCLNTMQASALS-ANEITEESVYRVTGNPT----PADVTTIVSHMLS 269
Query: 118 ----------------------------QDIISTIEIPESMLVDLVLKMSDIEYRLAAGT 149
++ +++P+ L++K+SD+EY A G
Sbjct: 270 SDFATSWIKTEEAVTQKGISMADLTREIHPVVMAMDLPQDCKCFLLMKLSDLEYYAAGGA 329
Query: 150 SEKIQLSALIAAFN 163
E L L+ AF
Sbjct: 330 RESAGLGGLLGAFQ 343
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 120/259 (46%), Gaps = 82/259 (31%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRPSTL+ +V+H+DI+ST+ ++ ++ + L G + + + A
Sbjct: 20 VEKYRPSTLESVVAHEDILSTLR--------HLMNSGNMPHLLLYGPPGTGKTTTIKACA 71
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK----------------SS 202
+ R + VLE+NASDDRGI +VR Q +FAST ++
Sbjct: 72 YYLYGKDRVRANVLEMNASDDRGIDVVRQQTREFASTTSIFSVMGSSSSTGSGSGGSAVK 131
Query: 203 YKLIILDEADAMTNDAQNALRRKL---------------------------------PV- 228
+KL+ILDEAD M++DAQ ALRR + PV
Sbjct: 132 FKLVILDEADQMSHDAQAALRRVIEKYTRNVRFCLLCNHINKIIPALQSRCTRFRFAPVK 191
Query: 229 -------------------TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYN 269
T DG A LS GD+R+ LN +Q++A + A+E+ E++VY
Sbjct: 192 KSAMMPRLRYVAEHEGVKYTTDGLAAAYRLSQGDLRRCLNTMQASALS-ANEITEESVYR 250
Query: 270 SVGYPTKTEITNILRWLLN 288
G PT ++T I+ +L+
Sbjct: 251 VTGNPTPADVTTIVSHMLS 269
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488
P D + I+S + D + +IK +E +KG+++ D+ EI +V +++P+
Sbjct: 257 PADVTTIVSHMLSSDFA-----TSWIKTEEAVTQKGISMADLTREIHPVVMAMDLPQDCK 311
Query: 489 VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 520
L++K+SD+EY A G E L L+ AF
Sbjct: 312 CFLLMKLSDLEYYAAGGARESAGLGGLLGAFQ 343
>gi|70949672|ref|XP_744225.1| replication factor C3 [Plasmodium chabaudi chabaudi]
gi|56524090|emb|CAH80967.1| replication factor C3, putative [Plasmodium chabaudi chabaudi]
Length = 328
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 114/298 (38%), Positives = 163/298 (54%), Gaps = 69/298 (23%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I +F+++ ELPHLL +GPPGTGKT+TILA ++LY ++ ++ VLELNASDDRGI +VR+
Sbjct: 22 IRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGDSR-SSFVLELNASDDRGITVVRE 80
Query: 357 QIFQFASTKTMH----KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
QI FA +K + ++S KLIILDEAD MT AQNA+RRI+E + NVRFC+ICNY++
Sbjct: 81 QIKTFAESKNHYNICERTSLKLIILDEADHMTFPAQNAMRRIMENYAKNVRFCLICNYVN 140
Query: 413 KIPPAIQSRCTRF---------------------------------RFGPLDSSLIMSRL 439
KI PAIQSRCT F R G D I++ L
Sbjct: 141 KITPAIQSRCTSFRFPLKEEYMLNKALDIAKSENVNITKNGVESLIRVGRGDMRRILNCL 200
Query: 440 DYDDISFFNIII-------------------------------WYIKIQEIKIEKGLALT 468
+S N++I Y I +++ +KG ++
Sbjct: 201 QVVSLSHKNMVIDENVILSTLDIPLPSEIKFILEHLTKSTIKESYEIITKLQEDKGYSIK 260
Query: 469 DILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKL 526
DI+ + V + P+S + L+ +IE R A+G +E+I LS+LI+AF R++L
Sbjct: 261 DIMICLYEAVLTYDYPDSAICLLLKNFGEIEERCASGATEQITLSSLISAFIEFRNEL 318
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 115/197 (58%), Gaps = 29/197 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + NVRFC+ICNY++KITPAIQSRCT FRF PL ++++ + + E VN+T +G
Sbjct: 123 MENYAKNVRFCLICNYVNKITPAIQSRCTSFRF-PLKEEYMLNKALDIAKSENVNITKNG 181
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEV-NEDTIFTLL-------------------- 99
+++I + GDMR++LN LQ + +H + V +E+ I + L
Sbjct: 182 VESLIRVGRGDMRRILNCLQVVSLSHKNMVIDENVILSTLDIPLPSEIKFILEHLTKSTI 241
Query: 100 ------VSRVEKYRPSTL-DELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
++++++ + ++ D ++ + + T + P+S + L+ +IE R A+G +E+
Sbjct: 242 KESYEIITKLQEDKGYSIKDIMICLYEAVLTYDYPDSAICLLLKNFGEIEERCASGATEQ 301
Query: 153 IQLSALIAAFNSARDKL 169
I LS+LI+AF R++L
Sbjct: 302 ITLSSLISAFIEFRNEL 318
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 123/256 (48%), Gaps = 70/256 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP L++++SH+ +ISTI ++ ++ + L G + S ++A
Sbjct: 1 VEKYRPGVLNDIISHEQVISTIR--------KFVEKGELPHLLLHGPPGTGKTSTILAVC 52
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH----KSSYKLIILDEADAM 214
+ +R VLELNASDDRGI +VR+QI FA +K + ++S KLIILDEAD M
Sbjct: 53 KELYGDSRSSF-VLELNASDDRGITVVREQIKTFAESKNHYNICERTSLKLIILDEADHM 111
Query: 215 TNDAQNALRR--------------------------------KLP--------------- 227
T AQNA+RR + P
Sbjct: 112 TFPAQNAMRRIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRFPLKEEYMLNKALDIAK 171
Query: 228 -----VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEV-NEDTVYNSVGYPTKTEITN 281
+T +G +++I + GDMR++LN LQ + +H + V +E+ + +++ P +EI
Sbjct: 172 SENVNITKNGVESLIRVGRGDMRRILNCLQVVSLSHKNMVIDENVILSTLDIPLPSEIKF 231
Query: 282 ILRWLLNESMDLCYKI 297
IL L ++ Y+I
Sbjct: 232 ILEHLTKSTIKESYEI 247
>gi|221059177|ref|XP_002260234.1| replication factor C3 [Plasmodium knowlesi strain H]
gi|193810307|emb|CAQ41501.1| replication factor C3, putative [Plasmodium knowlesi strain H]
Length = 344
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 86/146 (58%), Positives = 113/146 (77%), Gaps = 5/146 (3%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I +F+ + ELPHLL +GPPGTGKT+TILA ++LY +++ ++ VLELNASDDRGI +VRD
Sbjct: 37 IQKFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGESR-SSFVLELNASDDRGISVVRD 95
Query: 357 QIFQFASTK----TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
QI FA +K T K++ KLIILDEAD MT AQNA+RRI+E + NVRFC++CNY++
Sbjct: 96 QIKTFAESKNHYNTCEKTALKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVN 155
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSR 438
KI PAIQSRCT FRF PL ++++
Sbjct: 156 KITPAIQSRCTSFRFSPLKKEYMVNK 181
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 112/197 (56%), Gaps = 28/197 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + NVRFC++CNY++KITPAIQSRCT FRF PL ++++ + + E V +T DG
Sbjct: 138 MENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMVNKALDIAKSENVELTKDG 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTIFTLL-------------------- 99
++I + GDMR++LN LQ + +H + ++++ I + L
Sbjct: 198 LDSLIHVGRGDMRRILNCLQVVSLSHKNMTIDQNVILSTLDIPLPGEVKEILNHFTKSTM 257
Query: 100 ------VSRVEKYRPSTL-DELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
V++++ + ++ D +V+ + I T + P+S + L+ +IE R ++G +E+
Sbjct: 258 KESYEFVTKLQSTKGYSIKDIMVNLYESILTYDFPDSAMCLLLKNFGEIEERCSSGANEQ 317
Query: 153 IQLSALIAAFNSARDKL 169
I LSALI+AF R +L
Sbjct: 318 ITLSALISAFIEFRTEL 334
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 121/260 (46%), Gaps = 71/260 (27%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
L VEKYRP+ L++++SH+ +ISTI+ ++ ++ + L G + S +
Sbjct: 12 LTPWVEKYRPNVLNDIISHEQVISTIQ--------KFVQKGELPHLLLHGPPGTGKTSTI 63
Query: 159 IAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK----TMHKSSYKLIILDE 210
+A + +R VLELNASDDRGI +VRDQI FA +K T K++ KLIILDE
Sbjct: 64 LAVCKELYGESRSSF-VLELNASDDRGISVVRDQIKTFAESKNHYNTCEKTALKLIILDE 122
Query: 211 ADAMTNDAQNALRR---------------------------------------------- 224
AD MT AQNA+RR
Sbjct: 123 ADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMVNKA 182
Query: 225 -------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTVYNSVGYPTK 276
+ +T DG ++I + GDMR++LN LQ + +H + ++++ + +++ P
Sbjct: 183 LDIAKSENVELTKDGLDSLIHVGRGDMRRILNCLQVVSLSHKNMTIDQNVILSTLDIPLP 242
Query: 277 TEITNILRWLLNESMDLCYK 296
E+ IL +M Y+
Sbjct: 243 GEVKEILNHFTKSTMKESYE 262
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y + +++ KG ++ DI+ + + + P+S + L+ +IE R ++G +E+I L
Sbjct: 261 YEFVTKLQSTKGYSIKDIMVNLYESILTYDFPDSAMCLLLKNFGEIEERCSSGANEQITL 320
Query: 513 SALIAAFNSARDKL 526
SALI+AF R +L
Sbjct: 321 SALISAFIEFRTEL 334
>gi|50543016|ref|XP_499674.1| YALI0A02068p [Yarrowia lipolytica]
gi|49645539|emb|CAG83597.1| YALI0A02068p [Yarrowia lipolytica CLIB122]
Length = 358
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 114/151 (75%), Gaps = 9/151 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + + PHLLFYGPPGTGKT+TILA AR++Y + + +MVLELNASDDRGI +VRD
Sbjct: 53 LKKLLANKKFPHLLFYGPPGTGKTSTILAVAREIYGPS-YKSMVLELNASDDRGIDVVRD 111
Query: 357 QIFQFASTKTMH--------KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
QI FAS++ + +S++KL+ILDEADAMTN AQNALRR+IE++TT+ RFCI+
Sbjct: 112 QIKVFASSRQIFQRGGEENARSNFKLVILDEADAMTNVAQNALRRVIEQYTTHTRFCILA 171
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
NY K+ PA+ SRCTRFRF PL + I R+
Sbjct: 172 NYTHKLNPALLSRCTRFRFSPLPEAAIDKRI 202
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 109/202 (53%), Gaps = 34/202 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++TT+ RFCI+ NY K+ PA+ SRCTRFRF PL + I R+ VI+ EKV + PD
Sbjct: 158 IEQYTTHTRFCILANYTHKLNPALLSRCTRFRFSPLPEAAIDKRIMQVIDAEKVKIAPDA 217
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-------------------AHADEVNEDTIFTLL-- 99
K A+++LS GDMR+ LN+LQ+ T D + DTI T +
Sbjct: 218 KAALLELSKGDMRRALNVLQACHTGLEHPGKDTITLSQVYLCVGSPDPADIDTILTSILN 277
Query: 100 ---------VSRVEKYRPSTLDELVSHQDI-ISTIEIPESMLVDLVLKMSDIEYRLAAGT 149
VS +++ R L +++ + + + E + L+ K++DIEYRLA G
Sbjct: 278 DDWTTAYDTVSTLKRERGLALVDILEKLSAELMALNLKEKTKIALLSKLADIEYRLANGG 337
Query: 150 SEKIQLSALIAAFNSARDKLEV 171
SEKIQ SA I +D +E+
Sbjct: 338 SEKIQTSAAIGVI---KDSMEL 356
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 120/258 (46%), Gaps = 70/258 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TLD++ H+ +++T++ +L + K + + GT + + A+
Sbjct: 32 VEKYRPDTLDDVTGHEGVVTTLK---KLLANK--KFPHLLFYGPPGTGKTSTILAVAREI 86
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH--------KSSYKLIILDEADAM 214
K VLELNASDDRGI +VRDQI FAS++ + +S++KL+ILDEADAM
Sbjct: 87 YGPSYKSMVLELNASDDRGIDVVRDQIKVFASSRQIFQRGGEENARSNFKLVILDEADAM 146
Query: 215 TNDAQNALRR-------------------------------------------------- 224
TN AQNALRR
Sbjct: 147 TNVAQNALRRVIEQYTTHTRFCILANYTHKLNPALLSRCTRFRFSPLPEAAIDKRIMQVI 206
Query: 225 ---KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTVYNSVGYPTKT 277
K+ + PD K A+++LS GDMR+ LN+LQ+ T D + VY VG P
Sbjct: 207 DAEKVKIAPDAKAALLELSKGDMRRALNVLQACHTGLEHPGKDTITLSQVYLCVGSPDPA 266
Query: 278 EITNILRWLLNESMDLCY 295
+I IL +LN+ Y
Sbjct: 267 DIDTILTSILNDDWTTAY 284
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488
P D I++ + DD + Y + +K E+GLAL DIL ++S + L + E
Sbjct: 265 PADIDTILTSILNDDWT-----TAYDTVSTLKRERGLALVDILEKLSAELMALNLKEKTK 319
Query: 489 VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLE 527
+ L+ K++DIEYRLA G SEKIQ SA I +D +E
Sbjct: 320 IALLSKLADIEYRLANGGSEKIQTSAAIGVI---KDSME 355
>gi|82540400|ref|XP_724521.1| replication factor C3 [Plasmodium yoelii yoelii 17XNL]
gi|23479189|gb|EAA16086.1| replication factor C3 [Plasmodium yoelii yoelii]
Length = 344
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 165/299 (55%), Gaps = 70/299 (23%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I +F+++ ELPHLL +GPPGTGKT+TILA ++LY +++ ++ VLELNASDDRGI +VR+
Sbjct: 37 IRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGESR-SSFVLELNASDDRGITVVRE 95
Query: 357 QIFQFASTKTMH----KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
QI FA +K + ++S KLIILDEAD MT AQNA+RRI+E + NVRFC+ICNY++
Sbjct: 96 QIKTFAESKNHYNICERTSLKLIILDEADHMTFPAQNAMRRIMENYAKNVRFCLICNYVN 155
Query: 413 KIPPAIQSRCT--RF--------------------------------RFGPLDSSLIMSR 438
KI PAIQSRCT RF R G D I++
Sbjct: 156 KITPAIQSRCTSFRFSPLKEEYMLNKALDIAKSENVNLTKNGVESLIRVGRGDMRRILNC 215
Query: 439 LDYDDISFFNIII-------------------------------WYIKIQEIKIEKGLAL 467
L +S N++I Y I +++ +KG ++
Sbjct: 216 LQVVSLSHKNMVIDENVILSTLDIPLPSEIKFILEHLTKSTIKESYEIITKLQEDKGYSI 275
Query: 468 TDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKL 526
DI+ + V + P+S + L+ +IE R A+G +E+I LS+LI+AF R++L
Sbjct: 276 KDIMICLYETVLTYDYPDSAICLLLKNFGEIEERCASGATEQITLSSLISAFIEFRNEL 334
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 115/197 (58%), Gaps = 28/197 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + NVRFC+ICNY++KITPAIQSRCT FRF PL ++++ + + E VN+T +G
Sbjct: 138 MENYAKNVRFCLICNYVNKITPAIQSRCTSFRFSPLKEEYMLNKALDIAKSENVNLTKNG 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEV-NEDTIFTLL-------------------- 99
+++I + GDMR++LN LQ + +H + V +E+ I + L
Sbjct: 198 VESLIRVGRGDMRRILNCLQVVSLSHKNMVIDENVILSTLDIPLPSEIKFILEHLTKSTI 257
Query: 100 ------VSRVEKYRPSTL-DELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
++++++ + ++ D ++ + + T + P+S + L+ +IE R A+G +E+
Sbjct: 258 KESYEIITKLQEDKGYSIKDIMICLYETVLTYDYPDSAICLLLKNFGEIEERCASGATEQ 317
Query: 153 IQLSALIAAFNSARDKL 169
I LS+LI+AF R++L
Sbjct: 318 ITLSSLISAFIEFRNEL 334
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 123/257 (47%), Gaps = 71/257 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP L++++SH+ +ISTI ++ ++ + L G + S ++A
Sbjct: 16 VEKYRPGVLNDIISHEQVISTIR--------KFVEKGELPHLLLHGPPGTGKTSTILAVC 67
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH----KSSYKLIILDEADAM 214
+ +R VLELNASDDRGI +VR+QI FA +K + ++S KLIILDEAD M
Sbjct: 68 KELYGESRSSF-VLELNASDDRGITVVREQIKTFAESKNHYNICERTSLKLIILDEADHM 126
Query: 215 TNDAQNALRRKL-----------------PVTP--------------------------- 230
T AQNA+RR + +TP
Sbjct: 127 TFPAQNAMRRIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRFSPLKEEYMLNKALDIA 186
Query: 231 ---------DGKKAIIDLSDGDMRKVLNILQSAATAHADEV-NEDTVYNSVGYPTKTEIT 280
+G +++I + GDMR++LN LQ + +H + V +E+ + +++ P +EI
Sbjct: 187 KSENVNLTKNGVESLIRVGRGDMRRILNCLQVVSLSHKNMVIDENVILSTLDIPLPSEIK 246
Query: 281 NILRWLLNESMDLCYKI 297
IL L ++ Y+I
Sbjct: 247 FILEHLTKSTIKESYEI 263
>gi|255082558|ref|XP_002504265.1| predicted protein [Micromonas sp. RCC299]
gi|226519533|gb|ACO65523.1| predicted protein [Micromonas sp. RCC299]
Length = 355
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 88/151 (58%), Positives = 113/151 (74%), Gaps = 2/151 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I R ++ LP+LL YGPPGTGKT+TILA A++LY QF+ M LELNASDDRGI
Sbjct: 50 DIIDTIGRLTSQDRLPYLLLYGPPGTGKTSTILAVAKELYGP-QFSQMTLELNASDDRGI 108
Query: 352 GIVRDQIFQFAST-KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FAST + + +KLIILDE D+MT DAQ ALRRIIEK+T + RFC+I NY
Sbjct: 109 DVVRNEISAFASTMRFGSNAGFKLIILDECDSMTKDAQFALRRIIEKYTKHTRFCLIGNY 168
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+SK+ PA+QSRCTRFRF PL + + R+ +
Sbjct: 169 VSKVIPALQSRCTRFRFSPLGPNAVKDRVQF 199
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 109/198 (55%), Gaps = 29/198 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T + RFC+I NY+SK+ PA+QSRCTRFRF PL + + R+ +V+ QE + +T D
Sbjct: 153 IEKYTKHTRFCLIGNYVSKVIPALQSRCTRFRFSPLGPNAVKDRVQFVVRQENLQITDDA 212
Query: 61 KKAIIDLSDGDMRKVLNILQS-----------------AATAHADEVNEDTIFTLL---- 99
A+ L GDMR+ LNILQS A T + + I +L
Sbjct: 213 IDAVTRLGAGDMRRTLNILQSSFLSKEGDGPIDANSVYATTGQPRPEDIEAIAGVLLNSN 272
Query: 100 -------VSRVEKYRPSTLDELVS-HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE 151
V+ +++ R L ++V + + + +P+ +LV M+D+EYRLA T E
Sbjct: 273 FKEAVAKVAAIKQERGLALADIVRLLVEYVFRLHMPQLARANLVSDMADVEYRLAYVTHE 332
Query: 152 KIQLSALIAAFNSARDKL 169
++QL AL+ AF +AR+ +
Sbjct: 333 RLQLMALVGAFANAREAI 350
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 127/288 (44%), Gaps = 75/288 (26%)
Query: 62 KAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDII 121
+A +D+ GD + Q A+ A++ ++ ++ VEKYRPS L ++ +H+DII
Sbjct: 3 EAAMDVDGGDAPQ----RQKASAVDANDAKKNQMW------VEKYRPSKLSDVAAHKDII 52
Query: 122 STIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDD 179
TI + L L+L GT + + A+ + LELNASDD
Sbjct: 53 DTIGRLTSQDRLPYLLLYGP-------PGTGKTSTILAVAKELYGPQFSQMTLELNASDD 105
Query: 180 RGIGIVRDQIFQFAST-KTMHKSSYKLIILDEADAMTNDAQNALRR-------------- 224
RGI +VR++I FAST + + +KLIILDE D+MT DAQ ALRR
Sbjct: 106 RGIDVVRNEISAFASTMRFGSNAGFKLIILDECDSMTKDAQFALRRIIEKYTKHTRFCLI 165
Query: 225 ---------------------------------------KLPVTPDGKKAIIDLSDGDMR 245
L +T D A+ L GDMR
Sbjct: 166 GNYVSKVIPALQSRCTRFRFSPLGPNAVKDRVQFVVRQENLQITDDAIDAVTRLGAGDMR 225
Query: 246 KVLNILQSAATAHADE--VNEDTVYNSVGYPTKTEITNILRWLLNESM 291
+ LNILQS+ + + ++ ++VY + G P +I I LLN +
Sbjct: 226 RTLNILQSSFLSKEGDGPIDANSVYATTGQPRPEDIEAIAGVLLNSNF 273
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
K+ IK E+GLAL DI+ + V RL +P+ +LV M+D+EYRLA T E++QL A
Sbjct: 279 KVAAIKQERGLALADIVRLLVEYVFRLHMPQLARANLVSDMADVEYRLAYVTHERLQLMA 338
Query: 515 LIAAFNSARDKLEA 528
L+ AF +AR+ + A
Sbjct: 339 LVGAFANAREAIVA 352
>gi|428167624|gb|EKX36580.1| replication factor C subunit 4 [Guillardia theta CCMP2712]
Length = 350
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 117/156 (75%), Gaps = 8/156 (5%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++RF++++ LPHLL YGPPGTGKT+T+LA A+K++ ++ +M LELNASDDRGI
Sbjct: 41 DILTTLDRFLEQDRLPHLLLYGPPGTGKTSTVLALAKKVFG-PKYKSMTLELNASDDRGI 99
Query: 352 GIVRDQIFQFASTKTMH-------KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRF 404
+V+ +I FA T+T+ ++ +K+IILDEAD MT AQ ALRRIIE +T N RF
Sbjct: 100 DVVKKEIKDFAGTRTIFGLIVLLCRTGFKMIILDEADNMTQTAQFALRRIIENYTANARF 159
Query: 405 CIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
C+ICNY++KI PA+QSRCTRFRF PL S+ I L+
Sbjct: 160 CLICNYVNKIIPALQSRCTRFRFSPLTSADIQGNLE 195
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 112/197 (56%), Gaps = 30/197 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE +T N RFC+ICNY++KI PA+QSRCTRFRF PL S+ I L+ ++++E + TPD
Sbjct: 150 IENYTANARFCLICNYVNKIIPALQSRCTRFRFSPLTSADIQGNLERILDKENIKATPDA 209
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL--------------------- 99
KA+ +S GDMRK LNILQS++ A + EV ++I+
Sbjct: 210 LKAVEKISGGDMRKCLNILQSSSMA-SKEVTVESIYECTGDPNPSDVMWITHSLCNDSFE 268
Query: 100 -----VSRVEKYRPSTLDELVS--HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+ +++ + L ++V H+ II ++P L+ +SD+EYRL A T+EK
Sbjct: 269 DCYHKIFEIQREKGLALIDIVRAVHEQIIKH-DLPSVPFCRLLESLSDLEYRLTAATNEK 327
Query: 153 IQLSALIAAFNSARDKL 169
IQL + + F +++L
Sbjct: 328 IQLGSFVGMFGQLKEEL 344
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 123/266 (46%), Gaps = 72/266 (27%)
Query: 93 DTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGT 149
D + L +EKYRP TL+++V+H+DI++T+ D L+ + + L GT
Sbjct: 15 DPVVALECPWIEKYRPETLNDVVAHKDILTTL--------DRFLEQDRLPHLLLYGPPGT 66
Query: 150 SEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH-------KSS 202
+ + AL + K LELNASDDRGI +V+ +I FA T+T+ ++
Sbjct: 67 GKTSTVLALAKKVFGPKYKSMTLELNASDDRGIDVVKKEIKDFAGTRTIFGLIVLLCRTG 126
Query: 203 YKLIILDEADAMTNDAQNALRR-------------------------------------- 224
+K+IILDEAD MT AQ ALRR
Sbjct: 127 FKMIILDEADNMTQTAQFALRRIIENYTANARFCLICNYVNKIIPALQSRCTRFRFSPLT 186
Query: 225 ---------------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYN 269
+ TPD KA+ +S GDMRK LNILQS++ A + EV +++Y
Sbjct: 187 SADIQGNLERILDKENIKATPDALKAVEKISGGDMRKCLNILQSSSMA-SKEVTVESIYE 245
Query: 270 SVGYPTKTEITNILRWLLNESMDLCY 295
G P +++ I L N+S + CY
Sbjct: 246 CTGDPNPSDVMWITHSLCNDSFEDCY 271
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y KI EI+ EKGLAL DI+ + + + ++P L+ +SD+EYRL A T+EKIQL
Sbjct: 271 YHKIFEIQREKGLALIDIVRAVHEQIIKHDLPSVPFCRLLESLSDLEYRLTAATNEKIQL 330
Query: 513 SALIAAFNSARDKLEAPP 530
+ + F +++L + P
Sbjct: 331 GSFVGMFGQLKEELASQP 348
>gi|344237035|gb|EGV93138.1| Replication factor C subunit 5 [Cricetulus griseus]
Length = 407
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/156 (55%), Positives = 107/156 (68%), Gaps = 25/156 (16%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLE-----------LNA 345
I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLE +N
Sbjct: 114 IQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLEGRRNDLVSSKRINQ 173
Query: 346 SDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
R +G++ +KL+ILDEADAMT DAQNALRR+IEKFT N RFC
Sbjct: 174 DGPRDVGVL--------------GKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFC 219
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 220 LICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 255
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 94/195 (48%), Positives = 124/195 (63%), Gaps = 30/195 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+++E V+++ DG
Sbjct: 209 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 268
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVE---------------- 104
KA+I LS GDMR+ LNILQS A +V E+T++T ++
Sbjct: 269 MKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANILDWMLNQDFT 327
Query: 105 -KYRP----STLDELVSHQDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEK 152
YR TL L H DI++ + + P S+ + L+ KM+DIEYRL+ GTSEK
Sbjct: 328 TAYRHIMELKTLKGLALH-DILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEK 386
Query: 153 IQLSALIAAFNSARD 167
IQLS+LIAAF RD
Sbjct: 387 IQLSSLIAAFQVTRD 401
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTE+ L VHR++ P S+ + L+ KM+DI
Sbjct: 316 NILDWMLNQDFTTAYRHIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADI 375
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GTSEKIQLS+LIAAF RD
Sbjct: 376 EYRLSVGTSEKIQLSSLIAAFQVTRD 401
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 70/148 (47%), Gaps = 54/148 (36%)
Query: 202 SYKLIILDEADAMTNDAQNALRRKL---------------------------------PV 228
+KL+ILDEADAMT DAQNALRR + P+
Sbjct: 185 GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPL 244
Query: 229 TP--------------------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
TP DG KA+I LS GDMR+ LNILQS A +V E+TVY
Sbjct: 245 TPELMVPRLEHVVQEENVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVY 303
Query: 269 NSVGYPTKTEITNILRWLLNESMDLCYK 296
G+P KT+I NIL W+LN+ Y+
Sbjct: 304 TCTGHPLKTDIANILDWMLNQDFTTAYR 331
>gi|340505649|gb|EGR31962.1| replication factor c subunit, putative [Ichthyophthirius
multifiliis]
Length = 359
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 89/134 (66%), Positives = 107/134 (79%), Gaps = 4/134 (2%)
Query: 297 INRFIDE-NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
I +FI+E N+LP+LLFYGPPGTGKT+TI+A A++LY + + MVLELNASDDRGI +VR
Sbjct: 43 ITKFINEQNKLPNLLFYGPPGTGKTSTIVAIAKQLYGNS-YKQMVLELNASDDRGINVVR 101
Query: 356 DQIFQFASTKTMHKSSY--KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
DQI FA T + KLIILDEAD MTN AQ ALRRIIEK++ N RFC+ICNY+SK
Sbjct: 102 DQIKTFAGTANFSAAGKGTKLIILDEADQMTNQAQFALRRIIEKYSNNARFCLICNYVSK 161
Query: 414 IPPAIQSRCTRFRF 427
I PA+QSRCTRF+F
Sbjct: 162 IIPALQSRCTRFKF 175
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 114/271 (42%), Gaps = 78/271 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TL +L+SH+ I+ TI + ++ K+ ++ + GT + + A+
Sbjct: 22 VEKYRPDTLKDLISHEFIVMTI----TKFINEQNKLPNLLFYGPPGTGKTSTIVAIAKQL 77
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSY--KLIILDEADAMTNDAQN 220
K VLELNASDDRGI +VRDQI FA T + KLIILDEAD MTN AQ
Sbjct: 78 YGNSYKQMVLELNASDDRGINVVRDQIKTFAGTANFSAAGKGTKLIILDEADQMTNQAQF 137
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR K+
Sbjct: 138 ALRRIIEKYSNNARFCLICNYVSKIIPALQSRCTRFKFKHIPIEDAQKRIEEICLIEKIK 197
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQ-------------------SAATAHADEVNEDTVY 268
G +AI L DGDMR+V+N+LQ + + VNE+ VY
Sbjct: 198 YDQSGLEAIFKLCDGDMRRVVNMLQVKQFQYIYIYYIFQQSLQLQSNILNQVFVNEEFVY 257
Query: 269 NSVGYPTKTEITNILRWLLNESMDLCYKINR 299
G T ++ IL LL E++ Y+ R
Sbjct: 258 KFTGNATPQDMEEILNILLTENLINAYETIR 288
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 46/212 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK++ N RFC+ICNY+SKI PA+QSRCTRF+F + R++ + EK+ G
Sbjct: 143 IEKYSNNARFCLICNYVSKIIPALQSRCTRFKFKHIPIEDAQKRIEEICLIEKIKYDQSG 202
Query: 61 KKAIIDLSDGDMRKVLNILQ-------------------SAATAHADEVNEDTIFTL--- 98
+AI L DGDMR+V+N+LQ + + VNE+ ++
Sbjct: 203 LEAIFKLCDGDMRRVVNMLQVKQFQYIYIYYIFQQSLQLQSNILNQVFVNEEFVYKFTGN 262
Query: 99 -----------------LVSRVEKYRPSTLDELVSHQDIISTIEI-------PESMLVDL 134
L++ E R + + +S Q I+ + + P L L
Sbjct: 263 ATPQDMEEILNILLTENLINAYETIRKYQVLKGISLQVILKELNMKLMYSRYPSIALEFL 322
Query: 135 VLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 166
V +++++EYR++ EK+QL +LI F R
Sbjct: 323 VKRIAELEYRMSISCEEKVQLLSLIGVFIEIR 354
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 448 NIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTS 507
N+I Y I++ ++ KG++L IL E+++ + P L LV +++++EYR++
Sbjct: 279 NLINAYETIRKYQVLKGISLQVILKELNMKLMYSRYPSIALEFLVKRIAELEYRMSISCE 338
Query: 508 EKIQLSALIAAFNSAR 523
EK+QL +LI F R
Sbjct: 339 EKVQLLSLIGVFIEIR 354
>gi|226481347|emb|CAX73571.1| replication factor C [Schistosoma japonicum]
Length = 230
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 132/232 (56%), Gaps = 47/232 (20%)
Query: 339 MVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF 398
MVLELNASDDRGI IVR+Q+ FASTKT+ +KL+ILDEAD+MT DAQNALRRIIEKF
Sbjct: 1 MVLELNASDDRGIDIVREQVLSFASTKTLFAGKFKLVILDEADSMTKDAQNALRRIIEKF 60
Query: 399 TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLD--------------------------- 431
T N RFC+ICNYLSKI PAIQSRCT+FRF PL
Sbjct: 61 TENTRFCLICNYLSKIIPAIQSRCTKFRFAPLKFNDVNLCLRKIATNEGVTLTDDGVKAI 120
Query: 432 ---------------SSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISL 476
S MS D S + + Y EI+ L +L E
Sbjct: 121 YQFASGDMRKSINLLQSTSMSSKTVDGPSVY-ACVAYPSPDEIRS----LLDHLLNEPIS 175
Query: 477 LVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
+ + +P+++ DL++ +SDIE+R++ G SE++QL A I+AF A+ LEA
Sbjct: 176 TAYHITLPDAIRCDLLIALSDIEHRMSQGASERLQLGAFISAFTRAKVALEA 227
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 110/173 (63%), Gaps = 6/173 (3%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PAIQSRCT+FRF PL + + L + E V +T DG
Sbjct: 57 IEKFTENTRFCLICNYLSKIIPAIQSRCTKFRFAPLKFNDVNLCLRKIATNEGVTLTDDG 116
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDI 120
KAI + GDMRK +N+LQS + + + V+ +++ + S LD L++
Sbjct: 117 VKAIYQFASGDMRKSINLLQSTSMS-SKTVDGPSVYACVAYPSPDEIRSLLDHLLNEP-- 173
Query: 121 IST---IEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLE 170
IST I +P+++ DL++ +SDIE+R++ G SE++QL A I+AF A+ LE
Sbjct: 174 ISTAYHITLPDAIRCDLLIALSDIEHRMSQGASERLQLGAFISAFTRAKVALE 226
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 89/180 (49%), Gaps = 54/180 (30%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRR------ 224
VLELNASDDRGI IVR+Q+ FASTKT+ +KL+ILDEAD+MT DAQNALRR
Sbjct: 2 VLELNASDDRGIDIVREQVLSFASTKTLFAGKFKLVILDEADSMTKDAQNALRRIIEKFT 61
Query: 225 ------------------------KLPVTP-----------------------DGKKAII 237
K P DG KAI
Sbjct: 62 ENTRFCLICNYLSKIIPAIQSRCTKFRFAPLKFNDVNLCLRKIATNEGVTLTDDGVKAIY 121
Query: 238 DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYKI 297
+ GDMRK +N+LQS + + + V+ +VY V YP+ EI ++L LLNE + Y I
Sbjct: 122 QFASGDMRKSINLLQSTSMS-SKTVDGPSVYACVAYPSPDEIRSLLDHLLNEPISTAYHI 180
>gi|146161442|ref|XP_001007155.2| hypothetical protein TTHERM_00213600 [Tetrahymena thermophila]
gi|146146775|gb|EAR86910.2| hypothetical protein TTHERM_00213600 [Tetrahymena thermophila
SB210]
Length = 345
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/134 (65%), Positives = 109/134 (81%), Gaps = 4/134 (2%)
Query: 297 INRFIDENE-LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
I +FI+E++ LP+LLFYGPPGTGKT+ I+A A++LY K + +VLELNASDDRGI +VR
Sbjct: 42 IKKFIEEDKKLPNLLFYGPPGTGKTSLIVALAKQLYGK-NYKQLVLELNASDDRGIDVVR 100
Query: 356 DQIFQFASTKT--MHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
+QI FAST M KLIILDEAD+MTN AQ ALRRIIEK+++N RFC+ICNY+SK
Sbjct: 101 EQIKTFASTANFGMVGKGTKLIILDEADSMTNQAQFALRRIIEKYSSNARFCMICNYVSK 160
Query: 414 IPPAIQSRCTRFRF 427
I PA+QSRCTRF+F
Sbjct: 161 IIPALQSRCTRFKF 174
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 104/201 (51%), Gaps = 32/201 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+++N RFC+ICNY+SKI PA+QSRCTRF+F + R+ + E + G
Sbjct: 142 IEKYSSNARFCMICNYVSKIIPALQSRCTRFKFKHIPYQDAKLRIAQICNAENLKYKNSG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAA--------------------TAHADEVNEDTIFTLLV 100
+A+ L DGDMR+V+N+LQS + T +A + + I +
Sbjct: 202 IEAVFKLCDGDMRRVVNMLQSLSLQGYGSDEQVEITDELVYKFTGNATPKDIENIINTMN 261
Query: 101 SR--VEKY---RPSTLDELVSHQDIISTIEI-------PESMLVDLVLKMSDIEYRLAAG 148
++ E Y + +++ +S Q ++ I + P L LV +++D+EYR++
Sbjct: 262 NKSISESYEIIQSYQVEKGISLQVMLKEISLFLMNTSYPSLALEFLVKRLADLEYRMSIN 321
Query: 149 TSEKIQLSALIAAFNSARDKL 169
EK+Q +LI+AF R L
Sbjct: 322 CDEKVQTLSLISAFTEVRQLL 342
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 115/255 (45%), Gaps = 64/255 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP LD ++SH+ I++TI+ ++ K+ ++ + GT + + AL
Sbjct: 21 VEKYRPENLDNVISHEYIVATIK----KFIEEDKKLPNLLFYGPPGTGKTSLIVALAKQL 76
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKT--MHKSSYKLIILDEADAMTNDAQN 220
K VLELNASDDRGI +VR+QI FAST M KLIILDEAD+MTN AQ
Sbjct: 77 YGKNYKQLVLELNASDDRGIDVVREQIKTFASTANFGMVGKGTKLIILDEADSMTNQAQF 136
Query: 221 ALRR--------------------------------KLPVTP--DGKKAIIDLSDGD--- 243
ALRR K P D K I + + +
Sbjct: 137 ALRRIIEKYSSNARFCMICNYVSKIIPALQSRCTRFKFKHIPYQDAKLRIAQICNAENLK 196
Query: 244 ----------------MRKVLNILQS-----AATAHADEVNEDTVYNSVGYPTKTEITNI 282
MR+V+N+LQS + E+ ++ VY G T +I NI
Sbjct: 197 YKNSGIEAVFKLCDGDMRRVVNMLQSLSLQGYGSDEQVEITDELVYKFTGNATPKDIENI 256
Query: 283 LRWLLNESMDLCYKI 297
+ + N+S+ Y+I
Sbjct: 257 INTMNNKSISESYEI 271
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
IQ ++EKG++L +L EISL + P L LV +++D+EYR++ EK+Q +L
Sbjct: 272 IQSYQVEKGISLQVMLKEISLFLMNTSYPSLALEFLVKRLADLEYRMSINCDEKVQTLSL 331
Query: 516 IAAFNSARDKLEAP 529
I+AF R L P
Sbjct: 332 ISAFTEVRQLLRRP 345
>gi|67470640|ref|XP_651283.1| replication factor C familiy protein [Entamoeba histolytica
HM-1:IMSS]
gi|56468001|gb|EAL45896.1| replication factor C familiy protein [Entamoeba histolytica
HM-1:IMSS]
gi|407035358|gb|EKE37658.1| replication factor C familiy protein [Entamoeba nuttalli P19]
gi|449710429|gb|EMD49506.1| replication factor C familiy protein, putative [Entamoeba
histolytica KU27]
Length = 325
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/134 (60%), Positives = 105/134 (78%), Gaps = 1/134 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +FI+ N++PH+LFYGPPGTGKTTT LA ++L +F+A+VLELNASD+RGI +VRD
Sbjct: 27 LKQFINANQIPHMLFYGPPGTGKTTTALAIVKQL-CGTKFSALVLELNASDERGIDVVRD 85
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+T++ + K IILDE+D +T DAQNALRR +E+F+ N RF ICN + I P
Sbjct: 86 QIKSFASTRTLYTNCTKFIILDESDKLTKDAQNALRRTLEQFSANCRFIFICNEVHLITP 145
Query: 417 AIQSRCTRFRFGPL 430
AIQSRC + RFGPL
Sbjct: 146 AIQSRCAKMRFGPL 159
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 115/242 (47%), Gaps = 65/242 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
VEKYRPST D + H+ I+ +++ + + I + L GT + A++
Sbjct: 6 VEKYRPSTTDGIFGHEYILESLK--------QFINANQIPHMLFYGPPGTGKTTTALAIV 57
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
+ VLELNASD+RGI +VRDQI FAST+T++ + K IILDE+D +T DAQ
Sbjct: 58 KQLCGTKFSALVLELNASDERGIDVVRDQIKSFASTRTLYTNCTKFIILDESDKLTKDAQ 117
Query: 220 NALRRKL---------------------------------PVTP---------------- 230
NALRR L P++P
Sbjct: 118 NALRRTLEQFSANCRFIFICNEVHLITPAIQSRCAKMRFGPLSPDALTKIVENITMKEGM 177
Query: 231 ----DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
D KK+II++S GD R ++N LQ A + ++ T+Y VG PT +I +I+ L
Sbjct: 178 EIDEDAKKSIIEISKGDARSIINTLQ-ALSMTCKQITNSTLYTMVGLPTPAQIDDIISEL 236
Query: 287 LN 288
L+
Sbjct: 237 LS 238
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 99/197 (50%), Gaps = 39/197 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF ICN + ITPAIQSRC + RFGPL + ++ + +E + + D
Sbjct: 124 LEQFSANCRFIFICNEVHLITPAIQSRCAKMRFGPLSPDALTKIVENITMKEGMEIDEDA 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KK+II++S GD R ++N LQ A + ++ T++T+ V P+ +D+++S
Sbjct: 184 KKSIIEISKGDARSIINTLQ-ALSMTCKQITNSTLYTM----VGLPTPAQIDDIISELLS 238
Query: 118 --------------------QDIISTI--EIPESMLVDL---------VLKMSDIEYRLA 146
DII + ++ E L+ + + ++S IE L+
Sbjct: 239 SPYLESFTVVDNLIKAGLSLNDIIIRVVPKLIEGKLISVLDKTARIQCLYQLSLIEQALS 298
Query: 147 AGTSEKIQLSALIAAFN 163
G +E+ Q +A +AAF
Sbjct: 299 IGGNERTQTAAFVAAFQ 315
>gi|167390711|ref|XP_001739466.1| replication factor C subunit [Entamoeba dispar SAW760]
gi|165896845|gb|EDR24167.1| replication factor C subunit, putative [Entamoeba dispar SAW760]
Length = 539
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/134 (60%), Positives = 105/134 (78%), Gaps = 1/134 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +FI+ N++PH+LFYGPPGTGKTTT LA ++L +F+A+VLELNASD+RGI +VRD
Sbjct: 27 LKQFINANQIPHMLFYGPPGTGKTTTALAIVKQL-CGTKFSALVLELNASDERGIDVVRD 85
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+T++ + K IILDE+D +T DAQNALRR +E+F+ N RF ICN + I P
Sbjct: 86 QIKSFASTRTLYTNCTKFIILDESDKLTKDAQNALRRTLEQFSANCRFIFICNEVHLITP 145
Query: 417 AIQSRCTRFRFGPL 430
AIQSRC + RFGPL
Sbjct: 146 AIQSRCAKMRFGPL 159
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 113/246 (45%), Gaps = 73/246 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
VEKYRPST D + H+ I+ ++ +IP + GT +
Sbjct: 6 VEKYRPSTTDGIFGHEYILESLKQFINANQIPHMLFYG------------PPGTGKTTTA 53
Query: 156 SALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMT 215
A++ + VLELNASD+RGI +VRDQI FAST+T++ + K IILDE+D +T
Sbjct: 54 LAIVKQLCGTKFSALVLELNASDERGIDVVRDQIKSFASTRTLYTNCTKFIILDESDKLT 113
Query: 216 NDAQNALRRKL---------------------------------PVTP------------ 230
DAQNALRR L P++P
Sbjct: 114 KDAQNALRRTLEQFSANCRFIFICNEVHLITPAIQSRCAKMRFGPLSPNALTKIVENITT 173
Query: 231 --------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNI 282
D KK+II++S GD R ++N LQ A + ++ T+Y VG PT +I +I
Sbjct: 174 KEGMEIDDDAKKSIIEISKGDARSIINTLQ-ALSMTCKQITNSTLYTMVGLPTPAQIDDI 232
Query: 283 LRWLLN 288
+ LL+
Sbjct: 233 ISELLS 238
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 100/196 (51%), Gaps = 39/196 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF ICN + ITPAIQSRC + RFGPL + + ++ + +E + + D
Sbjct: 124 LEQFSANCRFIFICNEVHLITPAIQSRCAKMRFGPLSPNALTKIVENITTKEGMEIDDDA 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KK+II++S GD R ++N LQ A + ++ T++T+ V P+ +D+++S
Sbjct: 184 KKSIIEISKGDARSIINTLQ-ALSMTCKQITNSTLYTM----VGLPTPAQIDDIISELLS 238
Query: 118 --------------------QDIISTI--EIPESMLVDL---------VLKMSDIEYRLA 146
DII + ++ E LV + + ++S IE L+
Sbjct: 239 SPYFESFTVVDNLIKAGLSLNDIIIRVVPKLIEGKLVSVLDKTARIQCLYQLSLIEQALS 298
Query: 147 AGTSEKIQLSALIAAF 162
G +E+ Q +A +AAF
Sbjct: 299 IGGNERTQTAAFVAAF 314
>gi|440297885|gb|ELP90526.1| replication factor C subunit, putative [Entamoeba invadens IP1]
Length = 328
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/134 (58%), Positives = 105/134 (78%), Gaps = 1/134 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +FI N+LPHLLFYGPPGTGKTTT LA +++ ++ A+VLELNASD+RGI +VR+
Sbjct: 31 LQQFISANQLPHLLFYGPPGTGKTTTALAIVKQI-CGPKYTALVLELNASDERGINVVRE 89
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+T++ + K I+LDE+D +T DAQNALRR +E+++ N RF ICN ++ I P
Sbjct: 90 QIKSFASTRTLYTNCTKFIVLDESDKLTKDAQNALRRTLEQYSGNCRFVFICNEVNLITP 149
Query: 417 AIQSRCTRFRFGPL 430
AIQSRC +FRFGPL
Sbjct: 150 AIQSRCAKFRFGPL 163
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 121/249 (48%), Gaps = 63/249 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+T+ + H+ I+ +++ I + L L+ + GT + A++
Sbjct: 10 VEKYRPTTISGVQGHEYILESLQQFISANQLPHLL-------FYGPPGTGKTTTALAIVK 62
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ VLELNASD+RGI +VR+QI FAST+T++ + K I+LDE+D +T DAQN
Sbjct: 63 QICGPKYTALVLELNASDERGINVVREQIKSFASTRTLYTNCTKFIVLDESDKLTKDAQN 122
Query: 221 ALRRKL---------------------------------PVTP----------------- 230
ALRR L P++P
Sbjct: 123 ALRRTLEQYSGNCRFVFICNEVNLITPAIQSRCAKFRFGPLSPEALKKIMKHITDEEKMV 182
Query: 231 ---DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
D ++++ID+S GD R ++N LQ A + ++++ +T++ VG PT +ITNI +L
Sbjct: 183 VDEDAQQSLIDISKGDARTIINTLQ-ALSMTCNQISNETLFAMVGLPTPQQITNIFVQML 241
Query: 288 NESMDLCYK 296
+ YK
Sbjct: 242 SSDFIGAYK 250
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ N RF ICN ++ ITPAIQSRC +FRFGPL + + ++ ++EK+ V D
Sbjct: 128 LEQYSGNCRFVFICNEVNLITPAIQSRCAKFRFGPLSPEALKKIMKHITDEEKMVVDEDA 187
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL 99
++++ID+S GD R ++N LQ A + ++++ +T+F ++
Sbjct: 188 QQSLIDISKGDARTIINTLQ-ALSMTCNQISNETLFAMV 225
>gi|71028744|ref|XP_764015.1| replication factor C subunit 3 [Theileria parva strain Muguga]
gi|68350969|gb|EAN31732.1| replication factor C subunit 3, putative [Theileria parva]
Length = 347
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/150 (58%), Positives = 108/150 (72%), Gaps = 11/150 (7%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
F ++ +LPHLLF+GPPG+GKT+TILA +R LY +Q N VLELNASD+RGI VRDQI
Sbjct: 34 FAEKGQLPHLLFHGPPGSGKTSTILAISRYLY-GSQRNGFVLELNASDERGIDTVRDQIK 92
Query: 360 QFASTKTMHKSSY----------KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
F+ T S+ KLIILDEAD MTN AQNALRRI+E ++ NVRFC+ICN
Sbjct: 93 AFSETSNTFTSTMPVDDPPRTNLKLIILDEADQMTNAAQNALRRIMEIYSNNVRFCLICN 152
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+++KI P IQSRCT FRF PL S ++ R+
Sbjct: 153 FMNKIIPPIQSRCTGFRFQPLKSDVVRERI 182
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 114/206 (55%), Gaps = 31/206 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ NVRFC+ICN+++KI P IQSRCT FRF PL S ++ R+ + + E V +T
Sbjct: 138 MEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKSDVVRERIREIAKLENVKITDCA 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
A++++ GDMR+VLN LQ + +HA + L+++ + S +D L+
Sbjct: 198 LDALVEIGQGDMRRVLNCLQVTSMSHAKGADFTIDANLILATSGLPQSSEIDHLLKSLMQ 257
Query: 116 -------------------SHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGT 149
S +DI I I+ P +V L+++++D+E RLAAG
Sbjct: 258 NSFKECIYELSVLHHKKGYSLEDIVRLLYKSIVKIDWPNVPIVQLLIRLADVEERLAAGA 317
Query: 150 SEKIQLSALIAAFNSARDKLEVLELN 175
+ IQ++++++AF +R ++E ++ +
Sbjct: 318 NSNIQIASIVSAFQESRYEIERIKFD 343
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 117/269 (43%), Gaps = 80/269 (29%)
Query: 97 TLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
TL VEKYRP TL +++SH+DI+ST+ I + + + L G + S
Sbjct: 4 TLGAPWVEKYRPETLQDIISHEDIMSTLMI--------FAEKGQLPHLLFHGPPGSGKTS 55
Query: 157 ALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSY--------- 203
++A + S R+ VLELNASD+RGI VRDQI F+ T S+
Sbjct: 56 TILAISRYLYGSQRNGF-VLELNASDERGIDTVRDQIKAFSETSNTFTSTMPVDDPPRTN 114
Query: 204 -KLIILDEADAMTNDAQ--------------------NALRRKLP--------------- 227
KLIILDEAD MTN AQ N + + +P
Sbjct: 115 LKLIILDEADQMTNAAQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLK 174
Query: 228 ------------------VTPDGKKAIIDLSDGDMRKVLNILQSAATAHAD----EVNED 265
+T A++++ GDMR+VLN LQ + +HA ++ +
Sbjct: 175 SDVVRERIREIAKLENVKITDCALDALVEIGQGDMRRVLNCLQVTSMSHAKGADFTIDAN 234
Query: 266 TVYNSVGYPTKTEITNILRWLLNESMDLC 294
+ + G P +EI ++L+ L+ S C
Sbjct: 235 LILATSGLPQSSEIDHLLKSLMQNSFKEC 263
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 46/66 (69%)
Query: 462 EKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNS 521
+KG +L DI+ + + +++ P +V L+++++D+E RLAAG + IQ++++++AF
Sbjct: 273 KKGYSLEDIVRLLYKSIVKIDWPNVPIVQLLIRLADVEERLAAGANSNIQIASIVSAFQE 332
Query: 522 ARDKLE 527
+R ++E
Sbjct: 333 SRYEIE 338
>gi|429329431|gb|AFZ81190.1| replication factor C subunit 3, putative [Babesia equi]
Length = 345
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 85/150 (56%), Positives = 107/150 (71%), Gaps = 11/150 (7%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
F ++ +LPHLLF+GPPGTGKT+TI+A +R LY Q N VLELNASD+RGI VR+QI
Sbjct: 34 FAEKGQLPHLLFHGPPGTGKTSTIMAISRYLYGN-QKNGFVLELNASDERGIDTVREQIK 92
Query: 360 QFASTKTMH----------KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
F+ T K++ KLIILDEAD MTN AQNALRRI+E +++NVRFC+ICN
Sbjct: 93 AFSETTNTFSNTSAQDSNIKTTLKLIILDEADQMTNAAQNALRRIMEIYSSNVRFCLICN 152
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+++KI P IQSRCT FRF PL + R+
Sbjct: 153 FMNKIIPPIQSRCTGFRFQPLKPDFVRKRI 182
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 116/204 (56%), Gaps = 29/204 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +++NVRFC+ICN+++KI P IQSRCT FRF PL + R+ + E E + ++ G
Sbjct: 138 MEIYSSNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPDFVRKRIRDIAEMENLKLSDCG 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA--DEVNEDTIFT------------LLVSRVEKY 106
+I + GDMR+VLN LQ A +++ + ++ + I T LL + ++
Sbjct: 198 LDTLIQIGQGDMRRVLNCLQVTAMSYSKGNVIDANLILTTSGMPQNSEIEHLLQTLMQCS 257
Query: 107 RPSTLDEL--------VSHQDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSE 151
++DEL S +DI+ I+ P ++ L+++++DIE RL+AG +
Sbjct: 258 FKESVDELNELHHLKGYSVEDIVKGLYKAILKIDWPNVPIIQLIMRLADIEERLSAGATA 317
Query: 152 KIQLSALIAAFNSARDKLEVLELN 175
IQ++++++AF R ++E L+ +
Sbjct: 318 SIQIASIVSAFAEVRYEIERLKFD 341
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 127/282 (45%), Gaps = 77/282 (27%)
Query: 97 TLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
+L VEKYRP T ++++SH+DI+ST+ M+ ++ + + GT + +
Sbjct: 4 SLAAPWVEKYRPETFEDIISHEDIMSTL-----MIFAEKGQLPHLLFHGPPGTGKTSTIM 58
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH----------KSSYKLI 206
A+ + VLELNASD+RGI VR+QI F+ T K++ KLI
Sbjct: 59 AISRYLYGNQKNGFVLELNASDERGIDTVREQIKAFSETTNTFSNTSAQDSNIKTTLKLI 118
Query: 207 ILDEADAMTNDAQNALRRKL---------------------------------PVTPD-- 231
ILDEAD MTN AQNALRR + P+ PD
Sbjct: 119 ILDEADQMTNAAQNALRRIMEIYSSNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPDFV 178
Query: 232 ------------------GKKAIIDLSDGDMRKVLNILQSAATAHA--DEVNEDTVYNSV 271
G +I + GDMR+VLN LQ A +++ + ++ + + +
Sbjct: 179 RKRIRDIAEMENLKLSDCGLDTLIQIGQGDMRRVLNCLQVTAMSYSKGNVIDANLILTTS 238
Query: 272 GYPTKTEITNILRWLLNESMDLCYKINRFIDE-NELPHLLFY 312
G P +EI ++L+ L+ S +DE NEL HL Y
Sbjct: 239 GMPQNSEIEHLLQTLMQCSF------KESVDELNELHHLKGY 274
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 48/73 (65%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
++ E+ KG ++ DI+ + + +++ P ++ L+++++DIE RL+AG + IQ+++
Sbjct: 264 ELNELHHLKGYSVEDIVKGLYKAILKIDWPNVPIIQLIMRLADIEERLSAGATASIQIAS 323
Query: 515 LIAAFNSARDKLE 527
+++AF R ++E
Sbjct: 324 IVSAFAEVRYEIE 336
>gi|241839414|ref|XP_002415236.1| replication factor C, subunit RFC2, putative [Ixodes scapularis]
gi|215509448|gb|EEC18901.1| replication factor C, subunit RFC2, putative [Ixodes scapularis]
Length = 252
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 95/193 (49%), Positives = 129/193 (66%), Gaps = 28/193 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL S + R+++VIEQE++ VT DG
Sbjct: 57 IEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSLSQMSPRIEHVIEQERLTVTEDG 116
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF----------------TLL----- 99
KKA++DL+ GDMRK LNILQS + A +EV E+ ++ TLL
Sbjct: 117 KKALMDLAQGDMRKALNILQSTSMAF-EEVTENNVYQCVGHPLKSDISNMVTTLLNEDFA 175
Query: 100 -----VSRVEKYRPSTLDELVSHQDI-ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+++V+ + L ++++ + + IE P + + L+ KM++IE RLAAGTSEKI
Sbjct: 176 FSYDQINKVKVNKGLALQDVLTQIHLYVHRIEFPNEVKMYLIDKMAEIENRLAAGTSEKI 235
Query: 154 QLSALIAAFNSAR 166
QLS+LIAAF +AR
Sbjct: 236 QLSSLIAAFQTAR 248
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/103 (77%), Positives = 90/103 (87%)
Query: 339 MVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF 398
MVLELNASDDRGIGIVR +I FASTKT+ KS +KLIILDEADAMTNDAQNALRR+IEKF
Sbjct: 1 MVLELNASDDRGIGIVRGEILNFASTKTIFKSGFKLIILDEADAMTNDAQNALRRVIEKF 60
Query: 399 TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T N RFC+ICNYLSKI PA+QSRCTRFRFGPL S + R+++
Sbjct: 61 TENARFCLICNYLSKIIPALQSRCTRFRFGPLSLSQMSPRIEH 103
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/183 (46%), Positives = 104/183 (56%), Gaps = 55/183 (30%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRR------ 224
VLELNASDDRGIGIVR +I FASTKT+ KS +KLIILDEADAMTNDAQNALRR
Sbjct: 2 VLELNASDDRGIGIVRGEILNFASTKTIFKSGFKLIILDEADAMTNDAQNALRRVIEKFT 61
Query: 225 -----------------------------------------------KLPVTPDGKKAII 237
+L VT DGKKA++
Sbjct: 62 ENARFCLICNYLSKIIPALQSRCTRFRFGPLSLSQMSPRIEHVIEQERLTVTEDGKKALM 121
Query: 238 DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCY-K 296
DL+ GDMRK LNILQS + A +EV E+ VY VG+P K++I+N++ LLNE Y +
Sbjct: 122 DLAQGDMRKALNILQSTSMAF-EEVTENNVYQCVGHPLKSDISNMVTTLLNEDFAFSYDQ 180
Query: 297 INR 299
IN+
Sbjct: 181 INK 183
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 69/97 (71%), Gaps = 7/97 (7%)
Query: 429 PLDSSL--IMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPES 486
PL S + +++ L +D +F Y +I ++K+ KGLAL D+LT+I L VHR+E P
Sbjct: 157 PLKSDISNMVTTLLNEDFAF-----SYDQINKVKVNKGLALQDVLTQIHLYVHRIEFPNE 211
Query: 487 MLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
+ + L+ KM++IE RLAAGTSEKIQLS+LIAAF +AR
Sbjct: 212 VKMYLIDKMAEIENRLAAGTSEKIQLSSLIAAFQTAR 248
>gi|403224069|dbj|BAM42199.1| replication factor C subunit [Theileria orientalis strain Shintoku]
Length = 347
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/150 (56%), Positives = 106/150 (70%), Gaps = 11/150 (7%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
F ++ +LPHLLF+GPPG GKT+TI+A AR LY +Q N VLELNASD+RGI VR+QI
Sbjct: 34 FAEKGQLPHLLFHGPPGAGKTSTIMAIARYLY-GSQRNGFVLELNASDERGIDTVREQIK 92
Query: 360 QFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
F+ T S+ KLIILDEAD MTN AQNALRRI+E ++ NVRFC+ICN
Sbjct: 93 SFSETSNTFSSTSANEDPPRTTLKLIILDEADQMTNAAQNALRRIMEIYSNNVRFCLICN 152
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+++KI P IQSRCT FRF PL L+ ++
Sbjct: 153 FMNKIIPPIQSRCTGFRFQPLKPELVRQKI 182
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 115/206 (55%), Gaps = 31/206 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ NVRFC+ICN+++KI P IQSRCT FRF PL L+ ++ + EKV+V+
Sbjct: 138 MEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPELVRQKIKDIAAIEKVSVSECA 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE----VNEDTIFT------------LLVSRVE 104
++D+ GDMR+VLN LQ A ++A ++ + I LL S ++
Sbjct: 198 LDTLVDIGQGDMRRVLNCLQVTAMSYAKGSDVVIDSNLILATSGLPKTLEIDHLLQSLMQ 257
Query: 105 KYRPSTLDEL--------VSHQDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGT 149
+DEL S +D++ I+ P ++ L+++++DIE RL++G
Sbjct: 258 NSFKECVDELNELHHTKGYSVEDLVRGVYKAVLKIDWPNVPVIQLLIRLADIEERLSSGA 317
Query: 150 SEKIQLSALIAAFNSARDKLEVLELN 175
+ IQ++AL+++F AR ++E ++ +
Sbjct: 318 NTSIQIAALVSSFAEARYEIEKIKFD 343
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 123/282 (43%), Gaps = 87/282 (30%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T +++SH+DI+ST+ + + + + L G + S ++A
Sbjct: 10 VEKYRPETFQDIISHEDIMSTLMV--------FAEKGQLPHLLFHGPPGAGKTSTIMAIA 61
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ S R+ VLELNASD+RGI VR+QI F+ T S+ KLIIL
Sbjct: 62 RYLYGSQRNGF-VLELNASDERGIDTVREQIKSFSETSNTFSSTSANEDPPRTTLKLIIL 120
Query: 209 DEADAMTNDAQNALRRKL---------------------------------PVTPD---- 231
DEAD MTN AQNALRR + P+ P+
Sbjct: 121 DEADQMTNAAQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPELVRQ 180
Query: 232 ----------------GKKAIIDLSDGDMRKVLNILQSAATAHADE----VNEDTVYNSV 271
++D+ GDMR+VLN LQ A ++A ++ + + +
Sbjct: 181 KIKDIAAIEKVSVSECALDTLVDIGQGDMRRVLNCLQVTAMSYAKGSDVVIDSNLILATS 240
Query: 272 GYPTKTEITNILRWLLNESMDLCYKINRFIDE-NELPHLLFY 312
G P EI ++L+ L+ S C +DE NEL H Y
Sbjct: 241 GLPKTLEIDHLLQSLMQNSFKEC------VDELNELHHTKGY 276
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 49/73 (67%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
++ E+ KG ++ D++ + V +++ P ++ L+++++DIE RL++G + IQ++A
Sbjct: 266 ELNELHHTKGYSVEDLVRGVYKAVLKIDWPNVPVIQLLIRLADIEERLSSGANTSIQIAA 325
Query: 515 LIAAFNSARDKLE 527
L+++F AR ++E
Sbjct: 326 LVSSFAEARYEIE 338
>gi|154277188|ref|XP_001539435.1| activator 1 subunit 3 [Ajellomyces capsulatus NAm1]
gi|150413020|gb|EDN08403.1| activator 1 subunit 3 [Ajellomyces capsulatus NAm1]
Length = 366
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/257 (42%), Positives = 139/257 (54%), Gaps = 51/257 (19%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA-ST 364
LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI + F+++ S
Sbjct: 103 LPHLLLYGPPGTGKTSTILALARRIYGVKNMRQMVLELNASDDRGIDVFVIHPFRYSLSN 162
Query: 365 KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCT- 423
++KLIILDEADAMT AQ ALRRI+EK+T N RFCII NY K+ PA+ SRCT
Sbjct: 163 SESTLGAFKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTR 222
Query: 424 ----------------------RFRFGP--LDSSLIMSRLDY-----------------D 442
R R P +DS + +S+ D
Sbjct: 223 FRFSPLKEEDIRVLVDQVVEKERVRIQPEAIDSLVQLSKGDMRRALNVLQACHASTPHPS 282
Query: 443 DISFF--------NIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLK 494
DI ++ I+ +K KGLAL DILT IS + R+E+P + + +
Sbjct: 283 DIKTIITTLLTTSDVTSCLNTIKTLKSTKGLALADILTSISTELQRIEVPAATRIVWMEG 342
Query: 495 MSDIEYRLAAGTSEKIQ 511
++DIE+RLAAG E +Q
Sbjct: 343 LADIEWRLAAGGGEMVQ 359
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 95/167 (56%), Gaps = 13/167 (7%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D V+E+E+V + P+
Sbjct: 193 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEEDIRVLVDQVVEKERVRIQPEA 252
Query: 61 KKAIIDLSDGDMRKVLNILQS--AATAHADEVNEDTIFTLLVSRVE------KYRPST-- 110
+++ LS GDMR+ LN+LQ+ A+T H ++ L S V K ST
Sbjct: 253 IDSLVQLSKGDMRRALNVLQACHASTPHPSDIKTIITTLLTTSDVTSCLNTIKTLKSTKG 312
Query: 111 ---LDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
D L S + IE+P + + + ++DIE+RLAAG E +Q
Sbjct: 313 LALADILTSISTELQRIEVPAATRIVWMEGLADIEWRLAAGGGEMVQ 359
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 102/237 (43%), Gaps = 66/237 (27%)
Query: 83 ATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIE 142
+T H + +F+ RVEKYRP+TL++ V + I+ + V ++ +
Sbjct: 57 STPHFQREKQLIVFS---KRVEKYRPNTLEDAVPNA---PNIDWTNPLFVQ---RLPHLL 107
Query: 143 YRLAAGTSEKIQLSALIAAFNSARDKLE-VLELNASDDRGIGIVRDQIFQFA-STKTMHK 200
GT + + AL ++ + VLELNASDDRGI + F+++ S
Sbjct: 108 LYGPPGTGKTSTILALARRIYGVKNMRQMVLELNASDDRGIDVFVIHPFRYSLSNSESTL 167
Query: 201 SSYKLIILDEADAMTNDAQNALRR------------------------------------ 224
++KLIILDEADAMT AQ ALRR
Sbjct: 168 GAFKLIILDEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSP 227
Query: 225 -----------------KLPVTPDGKKAIIDLSDGDMRKVLNILQS--AATAHADEV 262
++ + P+ +++ LS GDMR+ LN+LQ+ A+T H ++
Sbjct: 228 LKEEDIRVLVDQVVEKERVRIQPEAIDSLVQLSKGDMRRALNVLQACHASTPHPSDI 284
>gi|84996647|ref|XP_953045.1| replication factor C subunit [Theileria annulata strain Ankara]
gi|65304041|emb|CAI76420.1| replication factor C subunit, putative [Theileria annulata]
Length = 347
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/149 (57%), Positives = 106/149 (71%), Gaps = 11/149 (7%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
F ++ +LPHLLF+GPPG+GKT+TILA +R +Y ++ N VLELNASD+RGI VRDQI
Sbjct: 34 FAEKGQLPHLLFHGPPGSGKTSTILAISRYMYGNSR-NGFVLELNASDERGIDTVRDQIK 92
Query: 360 QFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
F+ T SS KLIILDEAD MTN AQNALRRI+E ++ NVRFC+ICN
Sbjct: 93 AFSETSNTFTSSIPVEDPPRTNLKLIILDEADQMTNAAQNALRRIMEIYSNNVRFCLICN 152
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSR 438
+++KI P IQSRCT FRF PL ++ R
Sbjct: 153 FMNKIIPPIQSRCTGFRFQPLKPDVVRER 181
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 113/206 (54%), Gaps = 31/206 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ NVRFC+ICN+++KI P IQSRCT FRF PL ++ R + + E V +T
Sbjct: 138 MEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPDVVRERTKEIAKLENVKITDCA 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
A++++ GDMR+VLN LQ + +H+ + + L++S + S +D L+
Sbjct: 198 LDALVEIGQGDMRRVLNCLQVTSMSHSSKTDFTVDANLILSTSGLPQSSEIDHLLKSLMQ 257
Query: 116 -------------------SHQDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGT 149
S +DI+ I+ P ++ L+++++D+E RL+AG
Sbjct: 258 NTFKECIYELNLLHHKKGHSLEDIVKGLYKCVVKIDWPNVPIIQLLIRLADVEERLSAGA 317
Query: 150 SEKIQLSALIAAFNSARDKLEVLELN 175
+ IQ++++++AF +R ++E ++ +
Sbjct: 318 NSNIQIASIVSAFQESRFEIERIKFD 343
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 128/274 (46%), Gaps = 81/274 (29%)
Query: 97 TLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
TL VEKYRP TL +++SH+DI+ST+ + + + + L G + S
Sbjct: 4 TLGAPWVEKYRPETLQDIISHEDIMSTLMV--------FAEKGQLPHLLFHGPPGSGKTS 55
Query: 157 ALIA----AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------- 202
++A + ++R+ VLELNASD+RGI VRDQI F+ T SS
Sbjct: 56 TILAISRYMYGNSRNGF-VLELNASDERGIDTVRDQIKAFSETSNTFTSSIPVEDPPRTN 114
Query: 203 YKLIILDEADAMTNDAQNALRRKL---------------------------------PVT 229
KLIILDEAD MTN AQNALRR + P+
Sbjct: 115 LKLIILDEADQMTNAAQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLK 174
Query: 230 PDGKK--------------------AIIDLSDGDMRKVLNILQSAATAHADE----VNED 265
PD + A++++ GDMR+VLN LQ + +H+ + V+ +
Sbjct: 175 PDVVRERTKEIAKLENVKITDCALDALVEIGQGDMRRVLNCLQVTSMSHSSKTDFTVDAN 234
Query: 266 TVYNSVGYPTKTEITNILRWLLNESMDLC-YKIN 298
+ ++ G P +EI ++L+ L+ + C Y++N
Sbjct: 235 LILSTSGLPQSSEIDHLLKSLMQNTFKECIYELN 268
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 46/66 (69%)
Query: 462 EKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNS 521
+KG +L DI+ + V +++ P ++ L+++++D+E RL+AG + IQ++++++AF
Sbjct: 273 KKGHSLEDIVKGLYKCVVKIDWPNVPIIQLLIRLADVEERLSAGANSNIQIASIVSAFQE 332
Query: 522 ARDKLE 527
+R ++E
Sbjct: 333 SRFEIE 338
>gi|440493105|gb|ELQ75611.1| Replication factor C, subunit RFC5 [Trachipleistophora hominis]
Length = 325
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 150/273 (54%), Gaps = 55/273 (20%)
Query: 302 DENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQF 361
+ + LPH+L YGPPGTGKTT+I A A+ LY K VLELNASDDRGI +VR+QI F
Sbjct: 54 EHDNLPHILLYGPPGTGKTTSIRAIAKFLY-KHTIMCNVLELNASDDRGINVVREQIKSF 112
Query: 362 ASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSR 421
A ++ KL+ILDEAD+M+ DAQNALRR+IE ++ NVRFC+I NY KI PAIQSR
Sbjct: 113 AMCRSFQNKK-KLVILDEADSMSRDAQNALRRVIEDYSGNVRFCLIANYAHKIIPAIQSR 171
Query: 422 CTRFRFGPLDSSLIMSRLD--------------------------------YDDISFF-- 447
C++FRF P+ S LI R+ D +S F
Sbjct: 172 CSKFRFSPVSSGLIKERVKSIAEMENIPIDDKCIDMLVQESEGDMRTLINTLDGLSQFKG 231
Query: 448 ----NIIIWYIKIQEI--------KIEKGLALTDILTEISLLV--HRL-----EIPESML 488
N+I+ + +++ +E + + + L E+ + RL E + +
Sbjct: 232 KITANMILPELDFEKVFELSRAKKYVEAKMMILEKLEELDFMTFFRRLTGYIRESKKFVN 291
Query: 489 VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNS 521
D+ +++ IE+R+A G SEKIQ++ L+ S
Sbjct: 292 YDIYEELAQIEHRIAVGCSEKIQIACLVRVLGS 324
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 95/182 (52%), Gaps = 20/182 (10%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ NVRFC+I NY KI PAIQSRC++FRF P+ S LI R+ + E E + +
Sbjct: 145 IEDYSGNVRFCLIANYAHKIIPAIQSRCSKFRFSPVSSGLIKERVKSIAEMENIPIDDKC 204
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD--------EVNEDTIFTLLVSRVEKY------ 106
++ S+GDMR ++N L + E++ + +F L SR +KY
Sbjct: 205 IDMLVQESEGDMRTLINTLDGLSQFKGKITANMILPELDFEKVFEL--SRAKKYVEAKMM 262
Query: 107 ---RPSTLDELVSHQDIISTIEIPESML-VDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+ LD + + + I + + D+ +++ IE+R+A G SEKIQ++ L+
Sbjct: 263 ILEKLEELDFMTFFRRLTGYIRESKKFVNYDIYEELAQIEHRIAVGCSEKIQIACLVRVL 322
Query: 163 NS 164
S
Sbjct: 323 GS 324
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 20/129 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE-------IPESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
VEKYRPSTLDE++ ++ +IS ++ +P +L GT + +
Sbjct: 28 VEKYRPSTLDEVLGNELVISALKSLQEHDNLPHILLYG------------PPGTGKTTSI 75
Query: 156 SALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMT 215
A+ VLELNASDDRGI +VR+QI FA ++ KL+ILDEAD+M+
Sbjct: 76 RAIAKFLYKHTIMCNVLELNASDDRGINVVREQIKSFAMCRSFQNKK-KLVILDEADSMS 134
Query: 216 NDAQNALRR 224
DAQNALRR
Sbjct: 135 RDAQNALRR 143
>gi|332840531|ref|XP_003314006.1| PREDICTED: replication factor C subunit 5 [Pan troglodytes]
Length = 255
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/195 (49%), Positives = 126/195 (64%), Gaps = 30/195 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV ++ DG
Sbjct: 57 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVGISEDG 116
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT---------------LLVSR--V 103
KA++ LS GDMR+ LNILQS A +V E+T++T +++R
Sbjct: 117 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNRDFT 175
Query: 104 EKYRP----STLDELVSHQDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEK 152
YR TL L H DI++ I + P S+ + L+ KM+DIEYRL+ GT+EK
Sbjct: 176 TAYRNITELKTLKGLALH-DILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEK 234
Query: 153 IQLSALIAAFNSARD 167
IQLS+LIAAF RD
Sbjct: 235 IQLSSLIAAFQVTRD 249
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/103 (73%), Positives = 87/103 (84%)
Query: 339 MVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF 398
MVLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKF
Sbjct: 1 MVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKF 60
Query: 399 TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 61 TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 103
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 93/179 (51%), Gaps = 54/179 (30%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRKL---- 226
VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR +
Sbjct: 2 VLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFT 61
Query: 227 -----------------------------PVTP--------------------DGKKAII 237
P+TP DG KA++
Sbjct: 62 ENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVGISEDGMKALV 121
Query: 238 DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYK 296
LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL W+LN Y+
Sbjct: 122 TLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNRDFTTAYR 179
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 61/90 (67%), Gaps = 9/90 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 164 NILDWMLNRDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI 223
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
EYRL+ GT+EKIQLS+LIAAF RD + A
Sbjct: 224 EYRLSVGTNEKIQLSSLIAAFQVTRDLIVA 253
>gi|391326181|ref|XP_003737599.1| PREDICTED: replication factor C subunit 4-like [Metaseiulus
occidentalis]
Length = 320
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 77/145 (53%), Positives = 109/145 (75%), Gaps = 2/145 (1%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + +LPHLLF+GPPGTGKT+TILA AR LY +F VLELNASD+RGI ++R+
Sbjct: 32 LKKCLQSGDLPHLLFFGPPGTGKTSTILALARDLYGN-EFRQKVLELNASDERGISVIRE 90
Query: 357 QIFQFAS-TKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
++ F+ T K Y+++ILDEAD+MT DAQ ALRR +EK+T RFC+ICNY++KI
Sbjct: 91 KVKNFSQMTANQGKIRYRIVILDEADSMTRDAQTALRRTMEKYTKTTRFCLICNYVTKII 150
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLD 440
P + SRC++FRF PL + +++++LD
Sbjct: 151 PPLNSRCSKFRFRPLPTDVLVNKLD 175
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 102/192 (53%), Gaps = 29/192 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNV-TPD 59
+EK+T RFC+ICNY++KI P + SRC++FRF PL + +++++LD + +E VN D
Sbjct: 130 MEKYTKTTRFCLICNYVTKIIPPLNSRCSKFRFRPLPTDVLVNKLDEICTKENVNFRGSD 189
Query: 60 GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL-------LVSRVEKYRPSTLD 112
K +I+L++GDMR+ + +LQSA A+++ + I + +V ++ Y LD
Sbjct: 190 DLKFLIELAEGDMRRAVTLLQSAHRISAEKITREDIRNIAGVIPDNVVEQI--YTEPVLD 247
Query: 113 ELVSH-------------------QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
L Q II+ I ++ L+ K++ +E+R+ G SE I
Sbjct: 248 RLTKRMRDFVREGYSGDQLLTQLLQMIIADERIEDTKRAALLEKLAIVEHRMKDGASELI 307
Query: 154 QLSALIAAFNSA 165
L L A S+
Sbjct: 308 SLQDLAATIVSS 319
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 78/131 (59%), Gaps = 18/131 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP T+D++ S +++S ++ L+ D+ + L G + S ++A
Sbjct: 11 VEKYRPRTVDDVASQDEVVSVLK--------KCLQSGDLPHLLFFGPPGTGKTSTILAL- 61
Query: 163 NSARD------KLEVLELNASDDRGIGIVRDQIFQFAS-TKTMHKSSYKLIILDEADAMT 215
ARD + +VLELNASD+RGI ++R+++ F+ T K Y+++ILDEAD+MT
Sbjct: 62 --ARDLYGNEFRQKVLELNASDERGISVIREKVKNFSQMTANQGKIRYRIVILDEADSMT 119
Query: 216 NDAQNALRRKL 226
DAQ ALRR +
Sbjct: 120 RDAQTALRRTM 130
>gi|194306569|ref|NP_001123584.1| replication factor C subunit 5 isoform 3 [Homo sapiens]
Length = 255
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 125/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 57 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 116
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 117 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 175
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L+ KM+DIEYRL+ GT+EKI
Sbjct: 176 TAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKI 235
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 236 QLSSLIAAFQVTRD 249
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 75/103 (72%), Positives = 87/103 (84%)
Query: 339 MVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF 398
MVLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKF
Sbjct: 1 MVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKF 60
Query: 399 TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 61 TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 103
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 94/179 (52%), Gaps = 54/179 (30%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRKL---- 226
VLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAMT DAQNALRR +
Sbjct: 2 VLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFT 61
Query: 227 -----------------------------PVTP--------------------DGKKAII 237
P+TP DG KA++
Sbjct: 62 ENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALV 121
Query: 238 DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYK 296
LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL W+LN+ Y+
Sbjct: 122 TLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYR 179
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 61/90 (67%), Gaps = 9/90 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 164 NILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI 223
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
EYRL+ GT+EKIQLS+LIAAF RD + A
Sbjct: 224 EYRLSVGTNEKIQLSSLIAAFQVTRDLIVA 253
>gi|158255650|dbj|BAF83796.1| unnamed protein product [Homo sapiens]
Length = 255
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 125/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 57 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 116
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 117 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 175
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L+ KM+DIEYRL+ GT+EKI
Sbjct: 176 TAYRNITELKTLKGLALHDILTEIHLFVHRVDSPSSVRIHLLTKMADIEYRLSVGTNEKI 235
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 236 QLSSLIAAFQVTRD 249
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 75/103 (72%), Positives = 87/103 (84%)
Query: 339 MVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF 398
MVLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKF
Sbjct: 1 MVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKF 60
Query: 399 TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 61 TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 103
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 94/179 (52%), Gaps = 54/179 (30%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRKL---- 226
VLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAMT DAQNALRR +
Sbjct: 2 VLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFT 61
Query: 227 -----------------------------PVTP--------------------DGKKAII 237
P+TP DG KA++
Sbjct: 62 ENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALV 121
Query: 238 DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYK 296
LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL W+LN+ Y+
Sbjct: 122 TLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYR 179
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 61/90 (67%), Gaps = 9/90 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 164 NILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDSPSSVRIHLLTKMADI 223
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
EYRL+ GT+EKIQLS+LIAAF RD + A
Sbjct: 224 EYRLSVGTNEKIQLSSLIAAFQVTRDLIVA 253
>gi|332250714|ref|XP_003274497.1| PREDICTED: replication factor C subunit 5 isoform 4 [Nomascus
leucogenys]
gi|67969441|dbj|BAE01071.1| unnamed protein product [Macaca fascicularis]
Length = 255
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 125/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 57 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 116
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 117 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 175
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L+ KM+DIEYRL+ GT+EKI
Sbjct: 176 TAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKI 235
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 236 QLSSLIAAFQVTRD 249
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/103 (73%), Positives = 87/103 (84%)
Query: 339 MVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF 398
MVLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKF
Sbjct: 1 MVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKF 60
Query: 399 TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 61 TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 103
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 94/179 (52%), Gaps = 54/179 (30%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRKL---- 226
VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR +
Sbjct: 2 VLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFT 61
Query: 227 -----------------------------PVTP--------------------DGKKAII 237
P+TP DG KA++
Sbjct: 62 ENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALV 121
Query: 238 DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYK 296
LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL W+LN+ Y+
Sbjct: 122 TLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYR 179
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 61/90 (67%), Gaps = 9/90 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 164 NILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI 223
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
EYRL+ GT+EKIQLS+LIAAF RD + A
Sbjct: 224 EYRLSVGTNEKIQLSSLIAAFQVTRDLIVA 253
>gi|145498359|ref|XP_001435167.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402297|emb|CAK67770.1| unnamed protein product [Paramecium tetraurelia]
Length = 340
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 83/150 (55%), Positives = 110/150 (73%), Gaps = 6/150 (4%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I +F ++N LP+LL YGPPGTGKT+TI+A A+++Y + ++N MVLELNASD+RGI VR+
Sbjct: 39 IKKFNEKNRLPNLLLYGPPGTGKTSTIIALAKQIY-QNKYNQMVLELNASDERGINTVRE 97
Query: 357 QIFQFASTKTM-----HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
I FA +++ +S KL+ILDEADAMT AQ ALRRIIEK+ RFC ICN++
Sbjct: 98 TIKGFAESQSFTFTKDKNTSIKLVILDEADAMTAAAQFALRRIIEKYAKTTRFCFICNHI 157
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
S+I PAIQSRCTRF+F + + SR+ Y
Sbjct: 158 SQIIPAIQSRCTRFKFKQISLDVASSRIKY 187
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 102/196 (52%), Gaps = 33/196 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+ RFC ICN++S+I PAIQSRCTRF+F + + SR+ Y+ E E + +
Sbjct: 141 IEKYAKTTRFCFICNHISQIIPAIQSRCTRFKFKQISLDVASSRIKYICENESIPLNEQA 200
Query: 61 KKAIIDLSDGDMRKVLN---------------------ILQSAATAHADEVNEDTIFTLL 99
K++ +L GDMR+V+N + Q AH D + + + +
Sbjct: 201 IKSVFELCSGDMRRVVNMLQSLSLSTSNSNLEVINSQYVYQFTGMAHPDLIKQIMEYLMN 260
Query: 100 VSRVEK--YRPSTL--DELVSHQDIISTIE--------IPESMLVDLVLKMSDIEYRLAA 147
S ++K + T+ ++ +S Q +++ + + + +++ +M+++EYRL+
Sbjct: 261 QSEIQKTYLKIKTILNEQGISLQLLLTELSTQLLGLNVLNDKQKCNVIERMAELEYRLSI 320
Query: 148 GTSEKIQLSALIAAFN 163
++++QL +LI F+
Sbjct: 321 CCNDQVQLLSLIGIFH 336
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 114/252 (45%), Gaps = 71/252 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRPSTLDE++SH++I++TI+ ++ L +L+L GT + + AL
Sbjct: 18 IEKYRPSTLDEVISHEEIVATIKKFNEKNRLPNLLLYG-------PPGTGKTSTIIALAK 70
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTM-----HKSSYKLIILDEADAMT 215
+ VLELNASD+RGI VR+ I FA +++ +S KL+ILDEADAMT
Sbjct: 71 QIYQNKYNQMVLELNASDERGINTVRETIKGFAESQSFTFTKDKNTSIKLVILDEADAMT 130
Query: 216 NDAQNALRR--------------------------------------------------- 224
AQ ALRR
Sbjct: 131 AAAQFALRRIIEKYAKTTRFCFICNHISQIIPAIQSRCTRFKFKQISLDVASSRIKYICE 190
Query: 225 --KLPVTPDGKKAIIDLSDGDMRKVLNI----LQSAATAHADEVNEDTVYNSVGYPTKTE 278
+P+ K++ +L GDMR+V+N+ S + ++ + +N VY G
Sbjct: 191 NESIPLNEQAIKSVFELCSGDMRRVVNMLQSLSLSTSNSNLEVINSQYVYQFTGMAHPDL 250
Query: 279 ITNILRWLLNES 290
I I+ +L+N+S
Sbjct: 251 IKQIMEYLMNQS 262
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEI-PESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
Y+KI+ I E+G++L +LTE+S + L + + +++ +M+++EYRL+ ++++Q
Sbjct: 268 YLKIKTILNEQGISLQLLLTELSTQLLGLNVLNDKQKCNVIERMAELEYRLSICCNDQVQ 327
Query: 512 LSALIAAFN 520
L +LI F+
Sbjct: 328 LLSLIGIFH 336
>gi|328909099|gb|AEB61217.1| replication factor c subunit 5-like protein, partial [Equus
caballus]
Length = 245
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 90/194 (46%), Positives = 123/194 (63%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL +V+E+EKV ++ DG
Sbjct: 47 VEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVVEEEKVAISEDG 106
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 107 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANVLDWMLNQDFT 165
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L+ KM+DIEYRL+ GT+EKI
Sbjct: 166 TAYRNITELKTLKGLALHDILTEIHLFVHRVDFPTSVRIHLLTKMADIEYRLSVGTNEKI 225
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 226 QLSSLIAAFQVTRD 239
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 129/241 (53%), Gaps = 67/241 (27%)
Query: 349 RGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
RGI IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR++EKFT N RFC+IC
Sbjct: 1 RGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVVEKFTENTRFCLIC 60
Query: 409 NYLSK-IP--------------------PAIQS--------------------------- 420
NYLSK IP P +Q
Sbjct: 61 NYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVVEEEKVAISEDGMKALVTLSSGDMRR 120
Query: 421 -----RCTRFRFGPLDSSLIMSRLDY---DDISFFNIIIW---------YIKIQEIKIEK 463
+ T FG + + + + DI+ N++ W Y I E+K K
Sbjct: 121 ALNILQSTNMAFGKVTEETVYTCTGHPLKSDIA--NVLDWMLNQDFTTAYRNITELKTLK 178
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
GLAL DILTEI L VHR++ P S+ + L+ KM+DIEYRL+ GT+EKIQLS+LIAAF R
Sbjct: 179 GLALHDILTEIHLFVHRVDFPTSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTR 238
Query: 524 D 524
D
Sbjct: 239 D 239
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 85/170 (50%), Gaps = 54/170 (31%)
Query: 180 RGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRKL------------- 226
RGI IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR +
Sbjct: 1 RGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVVEKFTENTRFCLIC 60
Query: 227 --------------------PVTP--------------------DGKKAIIDLSDGDMRK 246
P+TP DG KA++ LS GDMR+
Sbjct: 61 NYLSKIIPALQSRCTRFRFGPLTPELMVPRLQHVVEEEKVAISEDGMKALVTLSSGDMRR 120
Query: 247 VLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYK 296
LNILQS A +V E+TVY G+P K++I N+L W+LN+ Y+
Sbjct: 121 ALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANVLDWMLNQDFTTAYR 169
>gi|412990439|emb|CCO19757.1| replication factor C small subunit [Bathycoccus prasinos]
Length = 341
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/139 (58%), Positives = 103/139 (74%), Gaps = 1/139 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I + + +LPHLL YGPPGTGKT+ ILA AR+LY+ + F M LELNASD+RGI
Sbjct: 42 DIVATIRQLTHDKKLPHLLLYGPPGTGKTSIILALARELYSTS-FTQMALELNASDERGI 100
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR++I FAST +KL+ILDE+D+MT DAQ ALRRIIE++T RFC+ICN+
Sbjct: 101 DVVREEIQAFASTLRASSFGFKLVILDESDSMTKDAQFALRRIIERYTKYTRFCLICNFP 160
Query: 412 SKIPPAIQSRCTRFRFGPL 430
SKI PA+QSRCT+FR L
Sbjct: 161 SKIIPALQSRCTKFRLEAL 179
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 107/246 (43%), Gaps = 72/246 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
VEKYRP +LDE+ +H DI++TI ++P +L GT + +
Sbjct: 26 VEKYRPKSLDEIAAHADIVATIRQLTHDKKLPHLLLYG------------PPGTGKTSII 73
Query: 156 SALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMT 215
AL S LELNASD+RGI +VR++I FAST +KL+ILDE+D+MT
Sbjct: 74 LALARELYSTSFTQMALELNASDERGIDVVREEIQAFASTLRASSFGFKLVILDESDSMT 133
Query: 216 NDAQNALRR--------------------------------------------------- 224
DAQ ALRR
Sbjct: 134 KDAQFALRRIIERYTKYTRFCLICNFPSKIIPALQSRCTKFRLEALQFEDIRNKIQLVSS 193
Query: 225 --KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNI 282
L +T +G A+ + GDMRK LNILQSA A D ++ED VY G P + N+
Sbjct: 194 AENLKITEEGILAVCRVGCGDMRKSLNILQSAHLASKDVIDEDLVYAVTGKPLPVNMGNL 253
Query: 283 LRWLLN 288
LL
Sbjct: 254 CDSLLT 259
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 63/98 (64%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T RFC+ICN+ SKI PA+QSRCT+FR L I +++ V E + +T +G
Sbjct: 144 IERYTKYTRFCLICNFPSKIIPALQSRCTKFRLEALQFEDIRNKIQLVSSAENLKITEEG 203
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
A+ + GDMRK LNILQSA A D ++ED ++ +
Sbjct: 204 ILAVCRVGCGDMRKSLNILQSAHLASKDVIDEDLVYAV 241
>gi|322787624|gb|EFZ13664.1| hypothetical protein SINV_05560 [Solenopsis invicta]
Length = 204
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/102 (80%), Positives = 89/102 (87%)
Query: 340 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFT 399
VLELNASDDRGIGIVR QI FAST TM+KS +KLIILDEADAMT DAQNALRRIIEK+T
Sbjct: 1 VLELNASDDRGIGIVRGQILSFASTGTMYKSKFKLIILDEADAMTIDAQNALRRIIEKYT 60
Query: 400 TNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
NVRFCIICNYLSKI PA+QSRCTRFRF PL + IM RL++
Sbjct: 61 DNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIMPRLNH 102
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 102/179 (56%), Gaps = 54/179 (30%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRR------ 224
VLELNASDDRGIGIVR QI FAST TM+KS +KLIILDEADAMT DAQNALRR
Sbjct: 1 VLELNASDDRGIGIVRGQILSFASTGTMYKSKFKLIILDEADAMTIDAQNALRRIIEKYT 60
Query: 225 -----------------------------------------------KLPVTPDGKKAII 237
KL VT +GK+A++
Sbjct: 61 DNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIMPRLNHVIEAEKLQVTENGKEALM 120
Query: 238 DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYK 296
LS GDMRKV+++LQS A+ VNE+ VYN VG+P ++I +I+ WLLN+S D CYK
Sbjct: 121 TLSGGDMRKVISVLQSTWFAYG-AVNEENVYNCVGHPLPSDINSIVNWLLNDSYDTCYK 178
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 85/116 (73%), Gaps = 5/116 (4%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYLSKI PA+QSRCTRFRF PL + IM RL++VIE EK+ VT +G
Sbjct: 56 IEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIMPRLNHVIEAEKLQVTENG 115
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVS 116
K+A++ LS GDMRKV+++LQS A+ VNE+ ++ V PS ++ +V+
Sbjct: 116 KEALMTLSGGDMRKVISVLQSTWFAYG-AVNEENVYNC----VGHPLPSDINSIVN 166
>gi|402471008|gb|EJW04947.1| hypothetical protein EDEG_00064 [Edhazardia aedis USNM 41457]
Length = 312
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 104/135 (77%), Gaps = 2/135 (1%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPH+LFYGPPGTGKTTTI A A +LY + + +LELNASD+RGI VR+ I FA T
Sbjct: 36 LPHMLFYGPPGTGKTTTIRALAFQLYG-LNYKSNILELNASDERGIDTVRNTIKSFAQTI 94
Query: 366 TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRF 425
+ K++ KLIILDEAD+M+ DAQN +RRIIE F++NVRFC+I NY SKI PAIQSRCT+F
Sbjct: 95 SF-KNTMKLIILDEADSMSRDAQNCMRRIIEDFSSNVRFCLIANYSSKIIPAIQSRCTKF 153
Query: 426 RFGPLDSSLIMSRLD 440
RF P+ S I R++
Sbjct: 154 RFAPVKDSNIAQRIE 168
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 111/189 (58%), Gaps = 30/189 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE F++NVRFC+I NY SKI PAIQSRCT+FRF P+ S I R++ + +E + + DG
Sbjct: 123 IEDFSSNVRFCLIANYSSKIIPAIQSRCTKFRFAPVKDSNIAQRIENICIKENIKFSKDG 182
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA--DEVNEDTI----------------FT----- 97
AI+ +GDMRK++N L+ + A+ DE + ++I FT
Sbjct: 183 IHAIVRYCNGDMRKIMNDLEGISNAYGLIDEFSVNSICGGTSEKIFDEFYKILFTNDFEK 242
Query: 98 -LLVSRVEKYRPST-LDELVSHQDIISTIEIPESMLVDL-VLK-MSDIEYRLAAGTSEKI 153
LL +V K + S D L+++ IS + + +L + +LK +SDI+YRL+ G S++I
Sbjct: 243 ILLSCQVIKDKYSIDCDALITY---ISGLIVKSDILKKMQILKILSDIQYRLSLGCSQEI 299
Query: 154 QLSALIAAF 162
Q++A I+ F
Sbjct: 300 QMAAFISCF 308
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 104/236 (44%), Gaps = 63/236 (26%)
Query: 104 EKYRPSTLDELVSHQDIISTI-EIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
EKYRP L E++ + +++ ++ +I S ++ +L + GT + + AL
Sbjct: 7 EKYRPKALTEVLGNSEVVRSLSKIAASGILPHML------FYGPPGTGKTTTIRALAFQL 60
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
K +LELNASD+RGI VR+ I FA T + K++ KLIILDEAD+M+ DAQN +
Sbjct: 61 YGLNYKSNILELNASDERGIDTVRNTIKSFAQTISF-KNTMKLIILDEADSMSRDAQNCM 119
Query: 223 RRKL---------------------------------PV--------------------T 229
RR + PV +
Sbjct: 120 RRIIEDFSSNVRFCLIANYSSKIIPAIQSRCTKFRFAPVKDSNIAQRIENICIKENIKFS 179
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATAHA--DEVNEDTVYNSVGYPTKTEITNIL 283
DG AI+ +GDMRK++N L+ + A+ DE + +++ E IL
Sbjct: 180 KDGIHAIVRYCNGDMRKIMNDLEGISNAYGLIDEFSVNSICGGTSEKIFDEFYKIL 235
Score = 38.5 bits (88), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 457 QEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 516
Q IK + + ++T IS L+ + +I + M + +L SDI+YRL+ G S++IQ++A I
Sbjct: 248 QVIKDKYSIDCDALITYISGLIVKSDILKKMQILKIL--SDIQYRLSLGCSQEIQMAAFI 305
Query: 517 AAF 519
+ F
Sbjct: 306 SCF 308
>gi|237843503|ref|XP_002371049.1| activator 1 36 kDa, putative [Toxoplasma gondii ME49]
gi|211968713|gb|EEB03909.1| activator 1 36 kDa, putative [Toxoplasma gondii ME49]
gi|221484795|gb|EEE23089.1| activator 1 36 kDa, putative [Toxoplasma gondii GT1]
gi|221504971|gb|EEE30636.1| activator 1 36 kDa, putative [Toxoplasma gondii VEG]
Length = 398
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 109/180 (60%), Gaps = 34/180 (18%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I ++ + +LPHLLF+GPPGTGKT+TILA A++ Y A VLELNASDDRGI
Sbjct: 54 DIIRTIRNYVHKGQLPHLLFHGPPGTGKTSTILAVAKEFYGSA-VRTHVLELNASDDRGI 112
Query: 352 GIVRDQIFQFAST---------------------------------KTMHKSSYKLIILD 378
VR+QI FA T K S KLIILD
Sbjct: 113 NTVREQIKTFAETSSTSFQQNRLIFGKSAVPATEAAEATSSHGQEKKGQGGPSLKLIILD 172
Query: 379 EADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSR 438
EAD MTN AQNALRRI+E + NVRFC+ICN+++KI PAIQSRCT FRF P+ S+ + ++
Sbjct: 173 EADQMTNAAQNALRRIMEAYARNVRFCLICNFVNKITPAIQSRCTGFRFTPVSSASLKTK 232
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 114/196 (58%), Gaps = 40/196 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + NVRFC+ICN+++KITPAIQSRCT FRF P+ S+ + ++ +++ EK+ ++ DG
Sbjct: 189 MEAYARNVRFCLICNFVNKITPAIQSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDG 248
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH-ADEVNEDTIFTLLVSRVEKYRPST--------- 110
A++ ++ GDMR++LN +Q++ AH +EVN D +V R P +
Sbjct: 249 LDALVKIARGDMRRLLNCMQASHLAHPGEEVNAD-----IVHRTLGLPPPSEVTTMFERL 303
Query: 111 -----------LDELVS-------------HQDIISTIEIPESMLVDLVLKMSDIEYRLA 146
LDELV+ H+ I+ ++ P ++L+ V +++D+E RLA
Sbjct: 304 LVADFFACCKELDELVTAKGYAMRDWVIAFHERIL-LVDWPANVLITFVSRLADLEERLA 362
Query: 147 AGTSEKIQLSALIAAF 162
G SE +Q+ A++AAF
Sbjct: 363 TGASEAVQMHAVVAAF 378
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 124/302 (41%), Gaps = 105/302 (34%)
Query: 84 TAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDI 141
+AHAD + VEKYRP L ++++H DII TI + + L L+
Sbjct: 28 SAHADRA---------LPWVEKYRPERLSDVLAHDDIIRTIRNYVHKGQLPHLL------ 72
Query: 142 EYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFAST------ 195
+ GT + + A+ F + + VLELNASDDRGI VR+QI FA T
Sbjct: 73 -FHGPPGTGKTSTILAVAKEFYGSAVRTHVLELNASDDRGINTVREQIKTFAETSSTSFQ 131
Query: 196 ---------------------------KTMHKSSYKLIILDEADAMTNDAQNALRR---- 224
K S KLIILDEAD MTN AQNALRR
Sbjct: 132 QNRLIFGKSAVPATEAAEATSSHGQEKKGQGGPSLKLIILDEADQMTNAAQNALRRIMEA 191
Query: 225 -------------------------------------------------KLPVTPDGKKA 235
K+ ++ DG A
Sbjct: 192 YARNVRFCLICNFVNKITPAIQSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLDA 251
Query: 236 IIDLSDGDMRKVLNILQSAATAH-ADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLC 294
++ ++ GDMR++LN +Q++ AH +EVN D V+ ++G P +E+T + LL C
Sbjct: 252 LVKIARGDMRRLLNCMQASHLAHPGEEVNADIVHRTLGLPPPSEVTTMFERLLVADFFAC 311
Query: 295 YK 296
K
Sbjct: 312 CK 313
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 369 KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFG 428
K+ I+ DE +++D +AL +I + C+ ++L+ + + G
Sbjct: 230 KTKAAQIVQDEKMKLSDDGLDALVKIARGDMRRLLNCMQASHLAHPGEEVNADIVHRTLG 289
Query: 429 ---PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPE 485
P + + + RL D FF ++ E+ KG A+ D + + ++ P
Sbjct: 290 LPPPSEVTTMFERLLVAD--FFACCK---ELDELVTAKGYAMRDWVIAFHERILLVDWPA 344
Query: 486 SMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 519
++L+ V +++D+E RLA G SE +Q+ A++AAF
Sbjct: 345 NVLITFVSRLADLEERLATGASEAVQMHAVVAAF 378
>gi|255712103|ref|XP_002552334.1| KLTH0C02442p [Lachancea thermotolerans]
gi|238933713|emb|CAR21896.1| KLTH0C02442p [Lachancea thermotolerans CBS 6340]
Length = 356
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 109/156 (69%), Gaps = 12/156 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + LPH+LFYGPPGTGKT+TILA ++LY A + VLELNASD+RGI IVRD
Sbjct: 48 LKKTLQSANLPHMLFYGPPGTGKTSTILALTKELYGPALMKSRVLELNASDERGIAIVRD 107
Query: 357 QIFQFASTKTMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
+I FA T+ K S YK+IILDEAD+MT DAQ+ALRR +E ++ RFC
Sbjct: 108 KIKSFARL-TVSKPSQNDREKYPCPPYKIIILDEADSMTADAQSALRRTMENYSNVTRFC 166
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ICNY+++I + SRC++FRF PLDSS +SR+ Y
Sbjct: 167 LICNYVTRIIDPLASRCSKFRFKPLDSSNALSRVQY 202
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 58/83 (69%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF PLDSS +SR+ YV ++E++
Sbjct: 156 MENYSNVTRFCLICNYVTRIIDPLASRCSKFRFKPLDSSNALSRVQYVAKEERLQYDEHV 215
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ I+D+S GD+R+ + +LQS +
Sbjct: 216 LEKILDVSQGDLRRAIMLLQSTS 238
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 77/139 (55%), Gaps = 24/139 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP L+++ + ++ ++ L+ +++ + L G + S ++A
Sbjct: 27 VEKYRPKKLEDVTAQDHAVNVLK--------KTLQSANLPHMLFYGPPGTGKTSTILALT 78
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----------YKLII 207
+ A K VLELNASD+RGI IVRD+I FA T+ K S YK+II
Sbjct: 79 KELYGPALMKSRVLELNASDERGIAIVRDKIKSFARL-TVSKPSQNDREKYPCPPYKIII 137
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEAD+MT DAQ+ALRR +
Sbjct: 138 LDEADSMTADAQSALRRTM 156
>gi|170094016|ref|XP_001878229.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646683|gb|EDR10928.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 359
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 104/156 (66%), Gaps = 11/156 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + LPH+LFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI IVRD
Sbjct: 49 LRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGPDNFRNRVLELNASDERGISIVRD 108
Query: 357 QIFQFAST-----------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
+I FA K+ YK+IILDEAD+MT DAQ ALRRI+E + RFC
Sbjct: 109 KIKNFARQTPRAQAVASDGKSYPCPPYKIIILDEADSMTQDAQGALRRIMETYARITRFC 168
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
++CNY+++I + SRC++FRF PLDS SRL Y
Sbjct: 169 LVCNYVTRIIEPLASRCSKFRFTPLDSKSSFSRLSY 204
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 79/153 (51%), Gaps = 23/153 (15%)
Query: 87 ADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLA 146
A+ V + T+ L VEKYRP T+DE+ + + ++ + L +++ + L
Sbjct: 12 AESVPKHTVDPRLQPWVEKYRPKTIDEVSAQEHTVAVLR--------KTLTSTNLPHMLF 63
Query: 147 AGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST------- 195
G + S ++A F + VLELNASD+RGI IVRD+I FA
Sbjct: 64 YGPPGTGKTSTILALARQLFGPDNFRNRVLELNASDERGISIVRDKIKNFARQTPRAQAV 123
Query: 196 ----KTMHKSSYKLIILDEADAMTNDAQNALRR 224
K+ YK+IILDEAD+MT DAQ ALRR
Sbjct: 124 ASDGKSYPCPPYKIIILDEADSMTQDAQGALRR 156
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RFC++CNY+++I + SRC++FRF PLDS SRL Y+ E ++ P
Sbjct: 158 METYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSKSSFSRLSYIATAEHIDTNPAV 217
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S GD+R+ + LQSA+
Sbjct: 218 INALISTSSGDLRRAITYLQSAS 240
>gi|409082644|gb|EKM83002.1| hypothetical protein AGABI1DRAFT_69120 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 372
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/147 (55%), Positives = 101/147 (68%), Gaps = 11/147 (7%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST- 364
LPH+LFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI IVR++I FA
Sbjct: 58 LPHMLFYGPPGTGKTSTILALARQLFGPDNFKNRVLELNASDERGISIVREKIKNFARQT 117
Query: 365 ----------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
KT YK+IILDEAD+MT DAQ ALRRI+E + RFC++CNY+++I
Sbjct: 118 PRAQAVASDGKTYPCPPYKIIILDEADSMTQDAQGALRRIMETYARITRFCLVCNYVTRI 177
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF PLDS SRL Y
Sbjct: 178 IEPLASRCSKFRFTPLDSESATSRLTY 204
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 54/80 (67%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RFC++CNY+++I + SRC++FRF PLDS SRL Y+ ++E+++V
Sbjct: 158 METYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSESATSRLTYIAKEEQIDVDTSV 217
Query: 61 KKAIIDLSDGDMRKVLNILQ 80
A+I +S+GD+R+ + LQ
Sbjct: 218 IDALITVSNGDLRRAITYLQ 237
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 76/146 (52%), Gaps = 23/146 (15%)
Query: 94 TIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
T+ T L VEKYRP T++++ + + ++ + L +++ + L G
Sbjct: 19 TVDTELQPWVEKYRPKTIEDVSAQEHTVAVLR--------KTLTSTNLPHMLFYGPPGTG 70
Query: 154 QLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST-----------KTM 198
+ S ++A F K VLELNASD+RGI IVR++I FA KT
Sbjct: 71 KTSTILALARQLFGPDNFKNRVLELNASDERGISIVREKIKNFARQTPRAQAVASDGKTY 130
Query: 199 HKSSYKLIILDEADAMTNDAQNALRR 224
YK+IILDEAD+MT DAQ ALRR
Sbjct: 131 PCPPYKIIILDEADSMTQDAQGALRR 156
>gi|426200510|gb|EKV50434.1| hypothetical protein AGABI2DRAFT_200125 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 104/156 (66%), Gaps = 11/156 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + LPH+LFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI IVR+
Sbjct: 49 LRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGPDNFKNRVLELNASDERGISIVRE 108
Query: 357 QIFQFAST-----------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
+I FA KT YK+IILDEAD+MT DAQ ALRRI+E + RFC
Sbjct: 109 KIKNFARQTPRAQAVASDGKTYPCPPYKIIILDEADSMTQDAQGALRRIMETYARITRFC 168
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
++CNY+++I + SRC++FRF PLDS SRL Y
Sbjct: 169 LVCNYVTRIIEPLASRCSKFRFTPLDSESATSRLTY 204
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 54/80 (67%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RFC++CNY+++I + SRC++FRF PLDS SRL Y+ ++E+++V
Sbjct: 158 METYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSESATSRLTYIAKEEQIDVDTSV 217
Query: 61 KKAIIDLSDGDMRKVLNILQ 80
A+I +S+GD+R+ + LQ
Sbjct: 218 IDALITVSNGDLRRAITYLQ 237
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 72/137 (52%), Gaps = 23/137 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T++++ + + I+ + L +++ + L G + S ++A
Sbjct: 28 VEKYRPKTIEDVSAQEHTIAVLR--------KTLTSTNLPHMLFYGPPGTGKTSTILALA 79
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST-----------KTMHKSSYKLII 207
F K VLELNASD+RGI IVR++I FA KT YK+II
Sbjct: 80 RQLFGPDNFKNRVLELNASDERGISIVREKIKNFARQTPRAQAVASDGKTYPCPPYKIII 139
Query: 208 LDEADAMTNDAQNALRR 224
LDEAD+MT DAQ ALRR
Sbjct: 140 LDEADSMTQDAQGALRR 156
>gi|403416153|emb|CCM02853.1| predicted protein [Fibroporia radiculosa]
Length = 371
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 105/154 (68%), Gaps = 11/154 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + LPH+LFYGPPG+GKT+TILA +R+L+ F + VLELNASD+RGI IVRD
Sbjct: 46 LRRTLTSTNLPHMLFYGPPGSGKTSTILALSRQLFGPDNFRSRVLELNASDERGIAIVRD 105
Query: 357 QIFQFAST-----------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
+I FA KT YK+IILDEAD+MT DAQ ALRRI+E + RFC
Sbjct: 106 KIKNFARQTPRAQAVSSDGKTYPCPPYKIIILDEADSMTQDAQGALRRIMETYARITRFC 165
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
++CNY+++I + SRC++FRF PLDS+ SRL
Sbjct: 166 LVCNYVTRIIEPLASRCSKFRFKPLDSTSTSSRL 199
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 72/137 (52%), Gaps = 23/137 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T+D++ + + ++ + L +++ + L G + S ++A
Sbjct: 25 VEKYRPKTIDDISAQEHTVAVLR--------RTLTSTNLPHMLFYGPPGSGKTSTILALS 76
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST-----------KTMHKSSYKLII 207
F + VLELNASD+RGI IVRD+I FA KT YK+II
Sbjct: 77 RQLFGPDNFRSRVLELNASDERGIAIVRDKIKNFARQTPRAQAVSSDGKTYPCPPYKIII 136
Query: 208 LDEADAMTNDAQNALRR 224
LDEAD+MT DAQ ALRR
Sbjct: 137 LDEADSMTQDAQGALRR 153
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 55/83 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RFC++CNY+++I + SRC++FRF PLDS+ SRL + +E ++VT +
Sbjct: 155 METYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDSTSTSSRLSQIALEEHISVTDEV 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+I+ S GD+R+ + LQSA+
Sbjct: 215 VSTLINTSHGDLRRSITYLQSAS 237
>gi|429965988|gb|ELA47985.1| hypothetical protein VCUG_00568 [Vavraia culicis 'floridensis']
Length = 304
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/145 (55%), Positives = 104/145 (71%), Gaps = 2/145 (1%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+L YGPPGTGKTT+I A A+ LY K VLELNASDDRGI +VR+
Sbjct: 28 LKRLQEHDNLPHILLYGPPGTGKTTSIRAIAKFLY-KQTIMCNVLELNASDDRGINVVRE 86
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FA +++ KL++LDEAD+M+ DAQNALRR+IE ++ NVRFC I NY KI P
Sbjct: 87 QIKCFAVSRSFQNKK-KLVVLDEADSMSRDAQNALRRVIEDYSGNVRFCFIANYAHKIIP 145
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
AIQSRC++FRF P+ S I R+ +
Sbjct: 146 AIQSRCSKFRFSPVSSDAIKKRVRH 170
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 95/180 (52%), Gaps = 16/180 (8%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ NVRFC I NY KI PAIQSRC++FRF P+ S I R+ ++ E E + +
Sbjct: 124 IEDYSGNVRFCFIANYAHKIIPAIQSRCSKFRFSPVSSDAIKKRVRHISEMESIPIDDKC 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA--------DEVNEDTIFTLLVSRVEKYRPSTLD 112
++ S+GDMR+++N L + E++ + IF L R + +
Sbjct: 184 IDILVQESEGDMRRLVNTLDGLSRFKGAITVDMILPEIDFERIFELSRGRRFAEAKAVVL 243
Query: 113 ELVSHQDIIS-----TIEIPESMLV---DLVLKMSDIEYRLAAGTSEKIQLSALIAAFNS 164
E + D ++ T I ES D+ ++++IE+R+A G SEKIQ+S L+ +S
Sbjct: 244 ERLEELDFVTFFRRLTCYIRESKKFENYDIYEEIAEIEHRIAVGCSEKIQVSCLVRIMSS 303
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 72/129 (55%), Gaps = 20/129 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE-------IPESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
VEKYRPSTLDE++ ++ +I ++ +P +L GT + +
Sbjct: 7 VEKYRPSTLDEVLGNELVIEALKRLQEHDNLPHILLYG------------PPGTGKTTSI 54
Query: 156 SALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMT 215
A+ VLELNASDDRGI +VR+QI FA +++ KL++LDEAD+M+
Sbjct: 55 RAIAKFLYKQTIMCNVLELNASDDRGINVVREQIKCFAVSRSFQNKK-KLVVLDEADSMS 113
Query: 216 NDAQNALRR 224
DAQNALRR
Sbjct: 114 RDAQNALRR 122
>gi|388583076|gb|EIM23379.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 76/141 (53%), Positives = 105/141 (74%), Gaps = 5/141 (3%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPH+LFYGPPGTGKT+TILA +R+L+ + + VLELNASD+RGI +VR++I FA
Sbjct: 40 LPHMLFYGPPGTGKTSTILALSRQLFGQDLVKSRVLELNASDERGINVVREKIKNFAKQA 99
Query: 366 TMHKSS-----YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQS 420
+S YK+IILDEAD+MT DAQ+ALRR +E ++ + RFC++CNY+++I + S
Sbjct: 100 PKASTSASVPAYKIIILDEADSMTQDAQSALRRTMETYSKSTRFCLVCNYVTRIIEPVAS 159
Query: 421 RCTRFRFGPLDSSLIMSRLDY 441
RC++FRF PLD S +RL+Y
Sbjct: 160 RCSKFRFKPLDESDSKARLEY 180
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 58/86 (67%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ + RFC++CNY+++I + SRC++FRF PLD S +RL+Y+ ++E + +
Sbjct: 134 METYSKSTRFCLVCNYVTRIIEPVASRCSKFRFKPLDESDSKARLEYIAQEENIPLNEGV 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH 86
A+ID + GD+R+ + LQSAA H
Sbjct: 194 IDALIDNTHGDLRQAITYLQSAARLH 219
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 110/252 (43%), Gaps = 73/252 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T+++ V+ QD TI + + L + +++ + L G + S ++A
Sbjct: 10 VEKYRPRTIED-VAAQD--HTIRVLKKQLGN-----ANLPHMLFYGPPGTGKTSTILALS 61
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----YKLIILDEADA 213
F K VLELNASD+RGI +VR++I FA +S YK+IILDEAD+
Sbjct: 62 RQLFGQDLVKSRVLELNASDERGINVVREKIKNFAKQAPKASTSASVPAYKIIILDEADS 121
Query: 214 MTNDAQNALRRKL---------------------PVTPDGKK------------------ 234
MT DAQ+ALRR + PV K
Sbjct: 122 MTQDAQSALRRTMETYSKSTRFCLVCNYVTRIIEPVASRCSKFRFKPLDESDSKARLEYI 181
Query: 235 --------------AIIDLSDGDMRKVLNILQSAATAHA---DEVNEDTVYNSVGYPTKT 277
A+ID + GD+R+ + LQSAA H + DT+ G +
Sbjct: 182 AQEENIPLNEGVIDALIDNTHGDLRQAITYLQSAARLHQASNSAITVDTITEIAGTIPEN 241
Query: 278 EITNILRWLLNE 289
I NI++ N+
Sbjct: 242 IIDNIIQVCSNK 253
>gi|307596342|ref|YP_003902659.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307551543|gb|ADN51608.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 342
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 102/144 (70%), Gaps = 1/144 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
+I +F+ +PH+LFYGPPGTGKTT LA AR+LY A + VLELNASD+RGI +R
Sbjct: 29 RIKQFLKTGNMPHMLFYGPPGTGKTTMALAIARELYGDA-WRENVLELNASDERGITTIR 87
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T M K+ YKL+ILDEAD MT+DAQ ALRR++E + RF +I NY+S+I
Sbjct: 88 ERVKEFARTAPMGKAPYKLVILDEADNMTSDAQQALRRMMEMYANVTRFILIANYVSRII 147
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC FRF PL ++ RL
Sbjct: 148 DPIQSRCAMFRFSPLPKDAVLGRL 171
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 112/237 (47%), Gaps = 65/237 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
VEKYRPS +D+++ +++ I+ LK ++ + L GT + A+
Sbjct: 9 VEKYRPSRIDDIIDQEEVKERIK--------QFLKTGNMPHMLFYGPPGTGKTTMALAIA 60
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
+ VLELNASD+RGI +R+++ +FA T M K+ YKL+ILDEAD MT+DAQ
Sbjct: 61 RELYGDAWRENVLELNASDERGITTIRERVKEFARTAPMGKAPYKLVILDEADNMTSDAQ 120
Query: 220 NALRR-----------------------------------KLP----------------- 227
ALRR LP
Sbjct: 121 QALRRMMEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVLGRLREIASKEGV 180
Query: 228 -VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
VT + +AI D+S GDMRK +N LQ+AA A A E+ + +Y +VGY +I +++
Sbjct: 181 KVTNEALEAIWDVSQGDMRKAINTLQAAA-ATAKEITPEVIYKTVGYIEPKDIVDLV 236
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 96/189 (50%), Gaps = 30/189 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF +I NY+S+I IQSRC FRF PL ++ RL + +E V VT +
Sbjct: 127 MEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVLGRLREIASKEGVKVTNEA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL--------------------V 100
+AI D+S GDMRK +N LQ+AA A A E+ + I+ + V
Sbjct: 187 LEAIWDVSQGDMRKAINTLQAAA-ATAKEITPEVIYKTVGYIEPKDIVDLVNTVFSGDFV 245
Query: 101 SRVEKYRPSTLDELVSHQDIISTIE---------IPESMLVDLVLKMSDIEYRLAAGTSE 151
+K R + VS +I+ I+ +P+ V++ +DI+YRL G+ E
Sbjct: 246 KARDKLRTLMYEHGVSGTEILRAIQRQIMGGAINVPDEAKVEIAEAAADIDYRLTEGSDE 305
Query: 152 KIQLSALIA 160
+IQLSA +A
Sbjct: 306 EIQLSAFLA 314
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 455 KIQEIKIEKGLALTDILTEIS--LLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
K++ + E G++ T+IL I ++ + +P+ V++ +DI+YRL G+ E+IQL
Sbjct: 250 KLRTLMYEHGVSGTEILRAIQRQIMGGAINVPDEAKVEIAEAAADIDYRLTEGSDEEIQL 309
Query: 513 SALIA 517
SA +A
Sbjct: 310 SAFLA 314
>gi|448102295|ref|XP_004199768.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
gi|359381190|emb|CCE81649.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
Length = 360
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 107/155 (69%), Gaps = 10/155 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ LPH+LFYGPPGTGKT+TILA AR+LY F + VLELNASDDRGI IVR
Sbjct: 42 LKKTLESANLPHMLFYGPPGTGKTSTILALARQLYGPRLFKSRVLELNASDDRGISIVRQ 101
Query: 357 QIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + S YKLIILDEAD+MTNDAQ+ALRR IE ++ RFC+
Sbjct: 102 KVKNFARLAVSNASKEDLENYPCPPYKLIILDEADSMTNDAQSALRRTIENYSGVTRFCL 161
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ICNY+++I + SRC++FRFG L++ + R+ Y
Sbjct: 162 ICNYITRIIDPLSSRCSKFRFGLLNNDNALQRIRY 196
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 67/100 (67%), Gaps = 6/100 (6%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RFC+ICNY+++I + SRC++FRFG L++ + R+ Y++E+E +NV D
Sbjct: 150 IENYSGVTRFCLICNYITRIIDPLSSRCSKFRFGLLNNDNALQRIRYIVEKENLNVDEDV 209
Query: 61 KKAIIDLSDGDMRKVLNILQSA-----ATAHADEVNEDTI 95
+ ++ +S+GD+RK + LQSA A A+ D+ NED +
Sbjct: 210 PETLLSMSNGDLRKAITFLQSASRLSFALANPDD-NEDRM 248
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 108/258 (41%), Gaps = 86/258 (33%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LDE+ S + + ++ L+ +++ + L G + S ++A
Sbjct: 21 VEKYRPKNLDEVASQEHTVK--------ILKKTLESANLPHMLFYGPPGTGKTSTILALA 72
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASDDRGI IVR ++ FA + S YKLIIL
Sbjct: 73 RQLYGPRLFKSRVLELNASDDRGISIVRQKVKNFARLAVSNASKEDLENYPCPPYKLIIL 132
Query: 209 DEADAMTNDAQNALRR-------------------------------------------- 224
DEAD+MTNDAQ+ALRR
Sbjct: 133 DEADSMTNDAQSALRRTIENYSGVTRFCLICNYITRIIDPLSSRCSKFRFGLLNNDNALQ 192
Query: 225 ---------KLPVTPDGKKAIIDLSDGDMRKVLNILQSA-----ATAHADEVNEDTVY-- 268
L V D + ++ +S+GD+RK + LQSA A A+ D+ NED ++
Sbjct: 193 RIRYIVEKENLNVDEDVPETLLSMSNGDLRKAITFLQSASRLSFALANPDD-NEDRMHVD 251
Query: 269 ---NSVGYPTKTEITNIL 283
+ P EI I+
Sbjct: 252 EGNGKITKPAVQEIAGII 269
>gi|156084582|ref|XP_001609774.1| replication factor C3 protein [Babesia bovis T2Bo]
gi|154797026|gb|EDO06206.1| replication factor C3 protein, putative [Babesia bovis]
Length = 348
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 82/158 (51%), Positives = 110/158 (69%), Gaps = 12/158 (7%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + F ++ +LPHLLF+GPPGTGKT+TI+A +R LY + ++ V+ELNASD+RGI
Sbjct: 26 DILSTLMNFAEKGQLPHLLFHGPPGTGKTSTIMAVSRYLYGSHR-HSYVMELNASDERGI 84
Query: 352 GIVRDQIFQFASTKTMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTT 400
VR+QI FA T S KLIILDEAD MTN AQN+LRRI+E +++
Sbjct: 85 ETVREQIKTFAETSNTFSSGIVGSDSGPRTNLKLIILDEADQMTNAAQNSLRRIMEIYSS 144
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSR 438
NVRFC+ICN++++I P IQSRCT FRF PL + ++ R
Sbjct: 145 NVRFCLICNFMNRIIPPIQSRCTGFRFPPLKNDVVKRR 182
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 113/208 (54%), Gaps = 35/208 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +++NVRFC+ICN++++I P IQSRCT FRF PL + ++ R + + E + V+
Sbjct: 139 MEIYSSNVRFCLICNFMNRIIPPIQSRCTGFRFPPLKNDVVKRRTADIAKAEGLTVSECA 198
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT--LLVSRVEKYRPSTLDELV--- 115
+ ++ GDMR+VLN LQ TA + D + T +++S P+ + +L+
Sbjct: 199 LDTLAEIGQGDMRRVLNCLQ--VTAMSIGATRDKVITSDVVISTAGLPNPTEISKLLQRL 256
Query: 116 ---------------------SHQDIIST-------IEIPESMLVDLVLKMSDIEYRLAA 147
S +D+++ I+ P ++V L++++ DIE RL+A
Sbjct: 257 MQESFKDCVDYVVTLNQVQGYSVEDLVTALYRSILRIDWPNVVIVQLLIRLGDIEQRLSA 316
Query: 148 GTSEKIQLSALIAAFNSARDKLEVLELN 175
G S IQ+++L++AF R ++E L+ +
Sbjct: 317 GASPYIQIASLVSAFAEVRLEIERLKFD 344
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 114/265 (43%), Gaps = 73/265 (27%)
Query: 98 LLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 157
L V VEKYRP + +++SH DI+ST+ M ++ + + GT + + A
Sbjct: 5 LGVPWVEKYRPESFSDIISHDDILSTL-----MNFAEKGQLPHLLFHGPPGTGKTSTIMA 59
Query: 158 LIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----------YKLI 206
+ + V+ELNASD+RGI VR+QI FA T S KLI
Sbjct: 60 VSRYLYGSHRHSYVMELNASDERGIETVREQIKTFAETSNTFSSGIVGSDSGPRTNLKLI 119
Query: 207 ILDEADAMTNDAQNALRRKLPV-------------------------------------- 228
ILDEAD MTN AQN+LRR + +
Sbjct: 120 ILDEADQMTNAAQNSLRRIMEIYSSNVRFCLICNFMNRIIPPIQSRCTGFRFPPLKNDVV 179
Query: 229 ---TPDGKKA------------IIDLSDGDMRKVLNILQSAA---TAHADEV-NEDTVYN 269
T D KA + ++ GDMR+VLN LQ A A D+V D V +
Sbjct: 180 KRRTADIAKAEGLTVSECALDTLAEIGQGDMRRVLNCLQVTAMSIGATRDKVITSDVVIS 239
Query: 270 SVGYPTKTEITNILRWLLNESMDLC 294
+ G P TEI+ +L+ L+ ES C
Sbjct: 240 TAGLPNPTEISKLLQRLMQESFKDC 264
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488
P + S ++ RL + SF + + + + + +++ G ++ D++T + + R++ P ++
Sbjct: 246 PTEISKLLQRLMQE--SFKDCVDYVVTLNQVQ---GYSVEDLVTALYRSILRIDWPNVVI 300
Query: 489 VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLE 527
V L++++ DIE RL+AG S IQ+++L++AF R ++E
Sbjct: 301 VQLLIRLGDIEQRLSAGASPYIQIASLVSAFAEVRLEIE 339
>gi|67525023|ref|XP_660573.1| hypothetical protein AN2969.2 [Aspergillus nidulans FGSC A4]
gi|40744364|gb|EAA63540.1| hypothetical protein AN2969.2 [Aspergillus nidulans FGSC A4]
Length = 754
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 75/148 (50%), Positives = 106/148 (71%), Gaps = 13/148 (8%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LPH+LFYGPPGTGKT+TILA A+ L+ A + + +LELNASD+RGIGIVR+++ FA
Sbjct: 433 QLPHMLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVREKVKGFARV 492
Query: 365 KTMHKSS-------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+ H + +K+IILDEAD+MT DAQ+ALRR +E+++ RFC++CNY+
Sbjct: 493 QLSHPTGLDAEYFEKYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYV 552
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
++I + SRC++FRF PLD+S RL
Sbjct: 553 TRIIEPLASRCSKFRFKPLDNSAAGDRL 580
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 18/138 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TLD++ + T + L++ + + GT + + AL +
Sbjct: 403 VEKYRPKTLDDVAAQDHTTKTW----ARTNQAALQLPHMLFYGPPGTGKTSTILALAKSL 458
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------------YKLIIL 208
F A + +LELNASD+RGIGIVR+++ FA + H + +K+IIL
Sbjct: 459 FGPALYRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPPFKIIIL 518
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 519 DEADSMTQDAQSALRRTM 536
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 23/144 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF PLD+S RL + + EK+++
Sbjct: 536 MEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRLAQIAQLEKLSLENGV 595
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQD- 119
+I SDGD+R+ + LQSAA LV + + DE + Q
Sbjct: 596 VDKLISCSDGDLRRAITYLQSAAR--------------LVGAAKAAKDGDEDEEMKDQGS 641
Query: 120 ---IISTIE-----IPESMLVDLV 135
+STIE +PES+L L+
Sbjct: 642 DMITVSTIEEIAGVVPESVLDGLI 665
>gi|169854167|ref|XP_001833760.1| replication factor C [Coprinopsis cinerea okayama7#130]
gi|116505157|gb|EAU88052.1| replication factor C [Coprinopsis cinerea okayama7#130]
Length = 380
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 104/157 (66%), Gaps = 12/157 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
++R + LPH+LFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI IVRD
Sbjct: 53 LSRTLTSANLPHMLFYGPPGTGKTSTILALARELFGPDNFRNRVLELNASDERGISIVRD 112
Query: 357 QIFQFA------------STKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRF 404
+I FA KT YK+IILDEAD+MT DAQ ALRRI+E + RF
Sbjct: 113 KIKNFARQTPRAQQAVSSDGKTYPCPPYKIIILDEADSMTQDAQGALRRIMETYAKITRF 172
Query: 405 CIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
C++CNY+++I + SRC++FRF PLD +RL Y
Sbjct: 173 CLVCNYVTRIIEPLASRCSKFRFTPLDPDSASARLSY 209
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 8/136 (5%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RFC++CNY+++I + SRC++FRF PLD +RL Y+ + E ++++
Sbjct: 163 METYAKITRFCLVCNYVTRIIEPLASRCSKFRFTPLDPDSASARLSYIAQAENIDISKPV 222
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDI 120
A+I S GD+R+ + LQSAA + D +L +++ D +V+ D
Sbjct: 223 IDALISTSHGDLRRAITYLQSAARLAG---SSDPPTPILPRDIQEIAGVVPDGVVN--DF 277
Query: 121 ISTIEIP---ESMLVD 133
ST+ +P E M VD
Sbjct: 278 ASTLGVPVEDEGMEVD 293
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 72/138 (52%), Gaps = 24/138 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T++E+ + + S ++ L +++ + L G + S ++A
Sbjct: 32 VEKYRPKTINEISAQEHTTS--------VLSRTLTSANLPHMLFYGPPGTGKTSTILALA 83
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA------------STKTMHKSSYKLI 206
F + VLELNASD+RGI IVRD+I FA KT YK+I
Sbjct: 84 RELFGPDNFRNRVLELNASDERGISIVRDKIKNFARQTPRAQQAVSSDGKTYPCPPYKII 143
Query: 207 ILDEADAMTNDAQNALRR 224
ILDEAD+MT DAQ ALRR
Sbjct: 144 ILDEADSMTQDAQGALRR 161
>gi|392595637|gb|EIW84960.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 369
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/147 (55%), Positives = 102/147 (69%), Gaps = 11/147 (7%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST- 364
LPH+LFYGPPGTGKT+TILA AR+L+ F VLELNASDDRGI IVR++I FA
Sbjct: 53 LPHMLFYGPPGTGKTSTILALARQLFGPDNFRNRVLELNASDDRGISIVREKIKNFARQT 112
Query: 365 ----------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
KT YK+IILDEAD+MT DAQ ALRRI+E + RFC++CNY+++I
Sbjct: 113 PRAQAVASDGKTYPCPPYKIIILDEADSMTQDAQGALRRIMETYARITRFCLVCNYVTRI 172
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF PLDSS +RL +
Sbjct: 173 IEPLASRCSKFRFTPLDSSSTSNRLSH 199
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 59/83 (71%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RFC++CNY+++I + SRC++FRF PLDSS +RL ++ QE V+V+P+
Sbjct: 153 METYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSSSTSNRLSHIAAQEHVDVSPEV 212
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+A+ID S GD+R+ + LQSA+
Sbjct: 213 IQALIDTSSGDLRRSITYLQSAS 235
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 77/154 (50%), Gaps = 23/154 (14%)
Query: 86 HADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL 145
A + T+ L VEKYRP T+DE+ + + ++ + L +++ + L
Sbjct: 6 QAKAAPKHTVEPALQPWVEKYRPKTIDEVSAQEHAVAVLR--------KTLFSTNLPHML 57
Query: 146 AAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST------ 195
G + S ++A F + VLELNASDDRGI IVR++I FA
Sbjct: 58 FYGPPGTGKTSTILALARQLFGPDNFRNRVLELNASDDRGISIVREKIKNFARQTPRAQA 117
Query: 196 -----KTMHKSSYKLIILDEADAMTNDAQNALRR 224
KT YK+IILDEAD+MT DAQ ALRR
Sbjct: 118 VASDGKTYPCPPYKIIILDEADSMTQDAQGALRR 151
>gi|259486085|tpe|CBF83646.1| TPA: subunit of heteropentameric Replication factor C (RF-C)
(Eurofung) [Aspergillus nidulans FGSC A4]
Length = 387
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 109/156 (69%), Gaps = 13/156 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A+ L+ A + + +LELNASD+RGIGIVR+
Sbjct: 58 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVRE 117
Query: 357 QIFQFASTKTMHKSS-------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
++ FA + H + +K+IILDEAD+MT DAQ+ALRR +E+++ R
Sbjct: 118 KVKGFARVQLSHPTGLDAEYFEKYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITR 177
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
FC++CNY+++I + SRC++FRF PLD+S RL
Sbjct: 178 FCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRL 213
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 79/141 (56%), Gaps = 25/141 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TLD+ V+ QD + + + L+ S++ + L G + S ++A
Sbjct: 37 VEKYRPKTLDD-VAAQDHTTKV-------LQRTLQASNLPHMLFYGPPGTGKTSTILALA 88
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------------YKL 205
F A + +LELNASD+RGIGIVR+++ FA + H + +K+
Sbjct: 89 KSLFGPALYRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPPFKI 148
Query: 206 IILDEADAMTNDAQNALRRKL 226
IILDEAD+MT DAQ+ALRR +
Sbjct: 149 IILDEADSMTQDAQSALRRTM 169
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 23/144 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF PLD+S RL + + EK+++
Sbjct: 169 MEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRLAQIAQLEKLSLENGV 228
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQD- 119
+I SDGD+R+ + LQSAA LV + + DE + Q
Sbjct: 229 VDKLISCSDGDLRRAITYLQSAAR--------------LVGAAKAAKDGDEDEEMKDQGS 274
Query: 120 ---IISTIE-----IPESMLVDLV 135
+STIE +PES+L L+
Sbjct: 275 DMITVSTIEEIAGVVPESVLDGLI 298
>gi|393245398|gb|EJD52908.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 376
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 105/156 (67%), Gaps = 11/156 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + LPH+LFYGPPGTGKT+TILA AR+LY F VLELNASD+RGI IVR+
Sbjct: 47 LRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLYGPDNFRTRVLELNASDERGITIVRE 106
Query: 357 QIFQFAST-----------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
+I FA +T YK+IILDEAD+MT DAQ ALRRI+E + RFC
Sbjct: 107 KIKDFARQTPRANVASSDGQTYPCPPYKIIILDEADSMTQDAQAALRRIMENYARITRFC 166
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
++CNY+++I + SRC++FRF PLD+S RL+Y
Sbjct: 167 LVCNYVTRIIEPLASRCSKFRFKPLDNSSTHGRLEY 202
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 58/83 (69%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RFC++CNY+++I + SRC++FRF PLD+S RL+Y+ +QE VN++ D
Sbjct: 156 MENYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSSTHGRLEYIAQQEGVNISQDT 215
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
K++I S GD+R+ + LQ+A+
Sbjct: 216 IKSLIACSGGDLRRSITYLQTAS 238
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 23/146 (15%)
Query: 94 TIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
T+ L VEKYRP T++++ + + ++ + L +++ + L G
Sbjct: 17 TVDPQLQPWVEKYRPKTIEDVTAQEHTVAVLR--------KTLTSTNLPHMLFYGPPGTG 68
Query: 154 QLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST-----------KTM 198
+ S ++A + + VLELNASD+RGI IVR++I FA +T
Sbjct: 69 KTSTILALARQLYGPDNFRTRVLELNASDERGITIVREKIKDFARQTPRANVASSDGQTY 128
Query: 199 HKSSYKLIILDEADAMTNDAQNALRR 224
YK+IILDEAD+MT DAQ ALRR
Sbjct: 129 PCPPYKIIILDEADSMTQDAQAALRR 154
>gi|448098395|ref|XP_004198917.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
gi|359380339|emb|CCE82580.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
Length = 360
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 108/155 (69%), Gaps = 10/155 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ LPH+LFYGPPGTGKT+TILA A++LY F + VLELNASD+RGI IVR
Sbjct: 42 LKKTLESANLPHMLFYGPPGTGKTSTILALAKQLYGPRLFKSRVLELNASDERGISIVRQ 101
Query: 357 QIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + S YKLIILDEAD+MTNDAQ+ALRR IE ++ RFC+
Sbjct: 102 KVKNFARLAVSNASKEDLENYPCPPYKLIILDEADSMTNDAQSALRRTIENYSGVTRFCL 161
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ICNY+++I + SRC++FRFG L++ +SR+ Y
Sbjct: 162 ICNYITRIIDPLSSRCSKFRFGLLNNENALSRIKY 196
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 60/83 (72%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RFC+ICNY+++I + SRC++FRFG L++ +SR+ Y++E+E +NV D
Sbjct: 150 IENYSGVTRFCLICNYITRIIDPLSSRCSKFRFGLLNNENALSRIKYIVEKENLNVDEDV 209
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++ +S+GD+RK + LQSA+
Sbjct: 210 PETLLSISNGDLRKAITFLQSAS 232
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 74/138 (53%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
VEKYRP LDE+ S + + ++ L+ +++ + L GT + + AL
Sbjct: 21 VEKYRPKNLDEVASQEHTVK--------ILKKTLESANLPHMLFYGPPGTGKTSTILALA 72
Query: 160 AAFNSAR-DKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
R K VLELNASD+RGI IVR ++ FA + S YKLIIL
Sbjct: 73 KQLYGPRLFKSRVLELNASDERGISIVRQKVKNFARLAVSNASKEDLENYPCPPYKLIIL 132
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MTNDAQ+ALRR +
Sbjct: 133 DEADSMTNDAQSALRRTI 150
>gi|358367795|dbj|GAA84413.1| DNA replication factor C subunit Rfc2 [Aspergillus kawachii IFO
4308]
Length = 389
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 119/182 (65%), Gaps = 24/182 (13%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A+ L+ + + + +LELNASD+RGIGIVRD
Sbjct: 59 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVRD 118
Query: 357 QIFQFASTKTMHKSS-------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+I FA + H + +K+IILDEAD+MT DAQ+ALRR +E+++ R
Sbjct: 119 KIKNFARAQLTHSTGLSEEYLAQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITR 178
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEK 463
FC++CNY+++I + SRC++FRF LD+S RL++ K++ +++E
Sbjct: 179 FCLVCNYVTRIIEPLASRCSKFRFKALDNSAAGERLEH-----------IAKVENLRLED 227
Query: 464 GL 465
G+
Sbjct: 228 GV 229
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 25/141 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TLD+ V+ QD + + + L+ S++ + L G + S ++A
Sbjct: 38 VEKYRPKTLDD-VAAQDHTTKV-------LQRTLQASNLPHMLFYGPPGTGKTSTILALA 89
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------------YKL 205
F + + +LELNASD+RGIGIVRD+I FA + H + +K+
Sbjct: 90 KSLFGPSLYRSRILELNASDERGIGIVRDKIKNFARAQLTHSTGLSEEYLAQYPCPPFKI 149
Query: 206 IILDEADAMTNDAQNALRRKL 226
IILDEAD+MT DAQ+ALRR +
Sbjct: 150 IILDEADSMTQDAQSALRRTM 170
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 54/83 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF LD+S RL+++ + E + +
Sbjct: 170 MEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDNSAAGERLEHIAKVENLRLEDGV 229
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+I S+GDMR+ + +QSAA
Sbjct: 230 VDKLIACSEGDMRRAITYMQSAA 252
>gi|121705176|ref|XP_001270851.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
clavatus NRRL 1]
gi|119398997|gb|EAW09425.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
clavatus NRRL 1]
Length = 391
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 111/156 (71%), Gaps = 13/156 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A+ L+ A + + +LELNASD+RGIGIVR+
Sbjct: 60 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVRE 119
Query: 357 QIFQFASTK----TMHKSSY---------KLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+I FA T+ T SSY K+IILDEAD+MT DAQ+ALRR +E+++ R
Sbjct: 120 KIKGFARTQLSQPTGLDSSYFEQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITR 179
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
FC++CNY+++I + SRC++FRF PLD+S RL
Sbjct: 180 FCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGERL 215
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 83/147 (56%), Gaps = 25/147 (17%)
Query: 97 TLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
T L VEKYRP TLD+ V+ QD + + + L+ S++ + L G + S
Sbjct: 33 TRLQPWVEKYRPKTLDD-VAAQDHTTKV-------LQRTLQASNLPHMLFYGPPGTGKTS 84
Query: 157 ALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK----TMHKSSY----- 203
++A F A + +LELNASD+RGIGIVR++I FA T+ T SSY
Sbjct: 85 TILALAKSLFGPALYRSRILELNASDERGIGIVREKIKGFARTQLSQPTGLDSSYFEQYP 144
Query: 204 ----KLIILDEADAMTNDAQNALRRKL 226
K+IILDEAD+MT DAQ+ALRR +
Sbjct: 145 CPPFKIIILDEADSMTQDAQSALRRTM 171
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF PLD+S RL + EQE +N+
Sbjct: 171 MEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGERLKSIAEQENLNLEDGV 230
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ +I +GD+R+ + +QSAA
Sbjct: 231 IEKLISCGEGDLRRAITYMQSAA 253
>gi|358054157|dbj|GAA99693.1| hypothetical protein E5Q_06396 [Mixia osmundae IAM 14324]
Length = 446
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 129/213 (60%), Gaps = 23/213 (10%)
Query: 235 AIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLC 294
AIID S+G + + +L + A ++ T+ + + N +R L
Sbjct: 72 AIIDKSNGAVERKRPVLAAQAQPWVEKYRPKTIDDI------SAQENTVRVL-------- 117
Query: 295 YKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIV 354
+ ++ LPH+LFYGPPGTGKT+TILA A++L+ F VLELNASD+RGI +V
Sbjct: 118 ---RKSLENANLPHMLFYGPPGTGKTSTILALAKQLFGPEAFRTRVLELNASDERGITVV 174
Query: 355 RDQIFQFA------STKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
R++I FA + YK+IILDEAD+MT DAQ+ALRRI+E ++ RFC+IC
Sbjct: 175 REKIKNFAKIAISPAVGDYPCPPYKIIILDEADSMTQDAQSALRRIMENYSKITRFCLIC 234
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
NY+++I I SRC++FRF PLD++ RL+Y
Sbjct: 235 NYVTRIIEPITSRCSKFRFKPLDTTNTQKRLEY 267
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 62/95 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I I SRC++FRF PLD++ RL+YV ++E+V +
Sbjct: 221 MENYSKITRFCLICNYVTRIIEPITSRCSKFRFKPLDTTNTQKRLEYVCQKEEVQCGEES 280
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
+A+I S+GD+R+ + LQSA+ + + D +
Sbjct: 281 VQALIRCSEGDLRRAITYLQSASRLYGKDKPVDPV 315
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 34/172 (19%)
Query: 63 AIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIIS 122
AIID S+G + + +L + A VEKYRP T+D++ + ++ +
Sbjct: 72 AIIDKSNGAVERKRPVLAAQAQPW----------------VEKYRPKTIDDISAQENTVR 115
Query: 123 TIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASD 178
+ L+ +++ + L G + S ++A F + VLELNASD
Sbjct: 116 VLR--------KSLENANLPHMLFYGPPGTGKTSTILALAKQLFGPEAFRTRVLELNASD 167
Query: 179 DRGIGIVRDQIFQFA------STKTMHKSSYKLIILDEADAMTNDAQNALRR 224
+RGI +VR++I FA + YK+IILDEAD+MT DAQ+ALRR
Sbjct: 168 ERGITVVREKIKNFAKIAISPAVGDYPCPPYKIIILDEADSMTQDAQSALRR 219
>gi|344229660|gb|EGV61545.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 359
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 103/146 (70%), Gaps = 10/146 (6%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPH+LFYGPPGTGKT+TILA A+ LY F + VLELNASD+RGI IVR +I FA
Sbjct: 55 LPHMLFYGPPGTGKTSTILALAKSLYGPILFKSRVLELNASDERGISIVRQKIKNFARLT 114
Query: 366 TMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+ S YK+IILDEAD+MTNDAQ+ALRR +E ++ RFC++CNY+++I
Sbjct: 115 ISNPSPEDLEKYPCPPYKIIILDEADSMTNDAQSALRRTMETYSGVTRFCLVCNYITRII 174
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF PL++S + RL Y
Sbjct: 175 DPLASRCSKFRFKPLNNSDALGRLQY 200
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 55/87 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF PL++S + RL Y+ E +
Sbjct: 154 METYSGVTRFCLVCNYITRIIDPLASRCSKFRFKPLNNSDALGRLQYIAGHEGIEAEEGT 213
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA 87
+ ++ +S+GD+R+ + LQSA H+
Sbjct: 214 LEEVLKISNGDLRRAITYLQSATRLHS 240
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 78/138 (56%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP +LD++ S QD T+++ + LV +++ + L G + S ++A
Sbjct: 25 VEKYRPKSLDDVAS-QD--HTVKVLKRTLVS-----ANLPHMLFYGPPGTGKTSTILALA 76
Query: 163 NSARD----KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
S K VLELNASD+RGI IVR +I FA + S YK+IIL
Sbjct: 77 KSLYGPILFKSRVLELNASDERGISIVRQKIKNFARLTISNPSPEDLEKYPCPPYKIIIL 136
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MTNDAQ+ALRR +
Sbjct: 137 DEADSMTNDAQSALRRTM 154
>gi|71000134|ref|XP_754784.1| DNA replication factor C subunit Rfc2 [Aspergillus fumigatus Af293]
gi|66852421|gb|EAL92746.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
fumigatus Af293]
gi|159127792|gb|EDP52907.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
fumigatus A1163]
Length = 394
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 112/158 (70%), Gaps = 13/158 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A+ L+ A + + +LELNASD+RGIGIVR+
Sbjct: 63 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVRE 122
Query: 357 QIFQFASTK----TMHKSSY---------KLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
++ FA T+ T SSY K+IILDEAD+MT DAQ+ALRR +E+++ R
Sbjct: 123 KVKGFARTQLSQPTGLDSSYFEQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITR 182
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
FC++CNY+++I + SRC++FRF PLD+S RL +
Sbjct: 183 FCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAAERLAH 220
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 83/147 (56%), Gaps = 25/147 (17%)
Query: 97 TLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
T L VEKYRP TLD+ V+ QD + + + L+ S++ + L G + S
Sbjct: 36 TRLQPWVEKYRPKTLDD-VAAQDHTTKV-------LQRTLQASNLPHMLFYGPPGTGKTS 87
Query: 157 ALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK----TMHKSSY----- 203
++A F A + +LELNASD+RGIGIVR+++ FA T+ T SSY
Sbjct: 88 TILALAKSLFGPALYRSRILELNASDERGIGIVREKVKGFARTQLSQPTGLDSSYFEQYP 147
Query: 204 ----KLIILDEADAMTNDAQNALRRKL 226
K+IILDEAD+MT DAQ+ALRR +
Sbjct: 148 CPPFKIIILDEADSMTQDAQSALRRTM 174
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 53/83 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF PLD+S RL ++ E + +
Sbjct: 174 MEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAAERLAHIARLENLKLDEGV 233
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+I S+GD+R+ + +QSAA
Sbjct: 234 IDKLISCSEGDLRRAITYMQSAA 256
>gi|119492485|ref|XP_001263608.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
fischeri NRRL 181]
gi|119411768|gb|EAW21711.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
fischeri NRRL 181]
Length = 420
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 112/158 (70%), Gaps = 13/158 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A+ L+ A + + +LELNASD+RGIGIVR+
Sbjct: 61 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVRE 120
Query: 357 QIFQFASTK----TMHKSSY---------KLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
++ FA T+ T SSY K+IILDEAD+MT DAQ+ALRR +E+++ R
Sbjct: 121 KVKGFARTQLSQPTGLDSSYFEQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITR 180
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
FC++CNY++++ + SRC++FRF PLD+S RL +
Sbjct: 181 FCLVCNYVTRVIEPLASRCSKFRFKPLDNSAAAERLAH 218
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 83/147 (56%), Gaps = 25/147 (17%)
Query: 97 TLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
T L VEKYRP TLD+ V+ QD + + + L+ S++ + L G + S
Sbjct: 34 TRLQPWVEKYRPKTLDD-VAAQDHTTKV-------LQRTLQASNLPHMLFYGPPGTGKTS 85
Query: 157 ALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK----TMHKSSY----- 203
++A F A + +LELNASD+RGIGIVR+++ FA T+ T SSY
Sbjct: 86 TILALAKSLFGPALYRSRILELNASDERGIGIVREKVKGFARTQLSQPTGLDSSYFEQYP 145
Query: 204 ----KLIILDEADAMTNDAQNALRRKL 226
K+IILDEAD+MT DAQ+ALRR +
Sbjct: 146 CPPFKIIILDEADSMTQDAQSALRRTM 172
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 52/83 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY++++ + SRC++FRF PLD+S RL ++ E + +
Sbjct: 172 MEQYSRITRFCLVCNYVTRVIEPLASRCSKFRFKPLDNSAAAERLAHIARLENLKLDEGV 231
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+I +GD+R+ + +QSAA
Sbjct: 232 IDKLISCGEGDLRRAITYMQSAA 254
>gi|350635059|gb|EHA23421.1| hypothetical protein ASPNIDRAFT_47138 [Aspergillus niger ATCC 1015]
Length = 758
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 119/182 (65%), Gaps = 24/182 (13%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A+ L+ + + + +LELNASD+RGIGIVR+
Sbjct: 428 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVRE 487
Query: 357 QIFQFASTKTMHKSS-------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+I FA + H + +K+IILDEAD+MT DAQ+ALRR +E+++ R
Sbjct: 488 KIKNFARAQLTHSTGLGEEYLAQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITR 547
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEK 463
FC++CNY+++I + SRC++FRF LD++ RL++ K++ +++E
Sbjct: 548 FCLVCNYVTRIIEPLASRCSKFRFKALDNTAAGERLEH-----------IAKVENLRLED 596
Query: 464 GL 465
G+
Sbjct: 597 GV 598
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 79/141 (56%), Gaps = 25/141 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TLD+ V+ QD + + + L+ S++ + L G + S ++A
Sbjct: 407 VEKYRPKTLDD-VAAQDHTTKV-------LQRTLQASNLPHMLFYGPPGTGKTSTILALA 458
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------------YKL 205
F + + +LELNASD+RGIGIVR++I FA + H + +K+
Sbjct: 459 KSLFGPSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGLGEEYLAQYPCPPFKI 518
Query: 206 IILDEADAMTNDAQNALRRKL 226
IILDEAD+MT DAQ+ALRR +
Sbjct: 519 IILDEADSMTQDAQSALRRTM 539
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF LD++ RL+++ + E + +
Sbjct: 539 MEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDNTAAGERLEHIAKVENLRLEDGV 598
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+I S+GDMR+ + +QSAA
Sbjct: 599 VDKLIACSEGDMRRAITYMQSAA 621
>gi|401403730|ref|XP_003881552.1| putative activator 1 36 kDa [Neospora caninum Liverpool]
gi|325115965|emb|CBZ51519.1| putative activator 1 36 kDa [Neospora caninum Liverpool]
Length = 403
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/178 (49%), Positives = 108/178 (60%), Gaps = 38/178 (21%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I ++++ +LPHLLF+GPPGTGKT+TILA A++ Y A VLELNASDDRGI
Sbjct: 55 DIIRTIRHYVEKGQLPHLLFHGPPGTGKTSTILAVAKEFYGSA-VRTHVLELNASDDRGI 113
Query: 352 GIVRDQIFQFA--STKTMHKS-----------------------------------SYKL 374
VR+QI FA S+ + H S KL
Sbjct: 114 NTVREQIKTFAETSSTSFHGQGRLMFGKPAAPTASAEKEEASSLAQSQEKRGGAGPSLKL 173
Query: 375 IILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDS 432
IILDEAD MTN AQNALRRI+E + NVRFC+ICN+++KI PAIQSRCT FRF P+ S
Sbjct: 174 IILDEADQMTNAAQNALRRIMEAYARNVRFCLICNFINKITPAIQSRCTGFRFTPVSS 231
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 110/196 (56%), Gaps = 40/196 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + NVRFC+ICN+++KITPAIQSRCT FRF P+ S + + + E+E + ++ DG
Sbjct: 194 MEAYARNVRFCLICNFINKITPAIQSRCTGFRFTPVSSLSLKQKAAQIAEEETMKLSDDG 253
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE-VNEDTIFTLLVSRVEKYRPST--------- 110
A++ ++ GDMR++LN +Q++ AH E VN D +V R P +
Sbjct: 254 LDALVKIARGDMRRLLNCMQASHLAHPGEVVNAD-----IVHRTLGLPPPSEVTAMFERL 308
Query: 111 -----------LDELVS-------------HQDIISTIEIPESMLVDLVLKMSDIEYRLA 146
LDELV+ H+ I+ ++ P ++L+ V +++D+E RLA
Sbjct: 309 LVADFFACCKELDELVNTKGYAMRDWVIAFHERILR-VDWPVNVLITFVSRLADLEERLA 367
Query: 147 AGTSEKIQLSALIAAF 162
G SE +Q+ A++AAF
Sbjct: 368 TGASEAVQMHAVVAAF 383
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 120/287 (41%), Gaps = 100/287 (34%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD++++H DII TI + + L L+ + GT + + A+
Sbjct: 39 VEKYRPERLDDVLAHDDIIRTIRHYVEKGQLPHLL-------FHGPPGTGKTSTILAVAK 91
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFA--STKTMHKS----------------- 201
F + + VLELNASDDRGI VR+QI FA S+ + H
Sbjct: 92 EFYGSAVRTHVLELNASDDRGINTVREQIKTFAETSSTSFHGQGRLMFGKPAAPTASAEK 151
Query: 202 ------------------SYKLIILDEADAMTNDAQNALRRKL----------------- 226
S KLIILDEAD MTN AQNALRR +
Sbjct: 152 EEASSLAQSQEKRGGAGPSLKLIILDEADQMTNAAQNALRRIMEAYARNVRFCLICNFIN 211
Query: 227 PVTP------------------------------------DGKKAIIDLSDGDMRKVLNI 250
+TP DG A++ ++ GDMR++LN
Sbjct: 212 KITPAIQSRCTGFRFTPVSSLSLKQKAAQIAEEETMKLSDDGLDALVKIARGDMRRLLNC 271
Query: 251 LQSAATAHADE-VNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYK 296
+Q++ AH E VN D V+ ++G P +E+T + LL C K
Sbjct: 272 MQASHLAHPGEVVNADIVHRTLGLPPPSEVTAMFERLLVADFFACCK 318
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 22/169 (13%)
Query: 354 VRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
++ + Q A +TM S D DA+ A+ +RR++ C+ ++L+
Sbjct: 234 LKQKAAQIAEEETMKLSD------DGLDALVKIARGDMRRLLN--------CMQASHLAH 279
Query: 414 IPPAIQSRCTRFRFG---PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDI 470
+ + G P + + + RL D FF ++ E+ KG A+ D
Sbjct: 280 PGEVVNADIVHRTLGLPPPSEVTAMFERLLVAD--FFACCK---ELDELVNTKGYAMRDW 334
Query: 471 LTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 519
+ + R++ P ++L+ V +++D+E RLA G SE +Q+ A++AAF
Sbjct: 335 VIAFHERILRVDWPVNVLITFVSRLADLEERLATGASEAVQMHAVVAAF 383
>gi|328860731|gb|EGG09836.1| hypothetical protein MELLADRAFT_47409 [Melampsora larici-populina
98AG31]
Length = 382
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/142 (55%), Positives = 105/142 (73%), Gaps = 6/142 (4%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA-- 362
+LPH+LFYGPPGTGKT+TILA AR+L+ + VLELNASD+RGI +VRD+I FA
Sbjct: 62 DLPHMLFYGPPGTGKTSTILALARELFGPELMKSRVLELNASDERGISVVRDKIKSFAKV 121
Query: 363 ----STKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418
+T +K+IILDEAD+MT DAQ+ALRRI+E ++ RFC+ICNY+++I I
Sbjct: 122 SISPATNAYPCPPFKIIILDEADSMTQDAQSALRRIMENYSKITRFCLICNYVTRIIEPI 181
Query: 419 QSRCTRFRFGPLDSSLIMSRLD 440
SRC++FRF PL S+ +SRL+
Sbjct: 182 VSRCSKFRFTPLSSTDTLSRLN 203
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 55/83 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I I SRC++FRF PL S+ +SRL+ + E V V
Sbjct: 158 MENYSKITRFCLICNYVTRIIEPIVSRCSKFRFTPLSSTDTLSRLNEICRLENVKVAEPV 217
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
++I +SDGD+R+ + LQSA+
Sbjct: 218 LASLIKVSDGDLRRSITFLQSAS 240
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 77/148 (52%), Gaps = 18/148 (12%)
Query: 87 ADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLA 146
A+ + T+ + VEKYRP + E V QD + + + L +D+ + L
Sbjct: 17 AEAPSNPTVLPSALPWVEKYRPKNI-ESVEGQDATTRV-------LAKTLHRADLPHMLF 68
Query: 147 AGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFA------STK 196
G + S ++A F K VLELNASD+RGI +VRD+I FA +T
Sbjct: 69 YGPPGTGKTSTILALARELFGPELMKSRVLELNASDERGISVVRDKIKSFAKVSISPATN 128
Query: 197 TMHKSSYKLIILDEADAMTNDAQNALRR 224
+K+IILDEAD+MT DAQ+ALRR
Sbjct: 129 AYPCPPFKIIILDEADSMTQDAQSALRR 156
>gi|390594192|gb|EIN03605.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 364
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 105/156 (67%), Gaps = 11/156 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + LPH+LFYGPPGTGKT+TILA AR+L+ F + VLELNASD+RGI IVR+
Sbjct: 51 LRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGPDNFRSRVLELNASDERGISIVRE 110
Query: 357 QIFQFAST-----------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
+I FA KT YK+IILDEAD+MT DAQ ALRRI+E + RFC
Sbjct: 111 KIKNFARQTPRAQAVSSDGKTYPCPPYKIIILDEADSMTQDAQAALRRIMENYARITRFC 170
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
++CNY+++I + SRC++FRF PLD + SRL +
Sbjct: 171 LVCNYVTRIIEPLASRCSKFRFKPLDPTSTSSRLQH 206
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 54/83 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RFC++CNY+++I + SRC++FRF PLD + SRL +V + E+V VTP
Sbjct: 160 MENYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDPTSTSSRLQHVADAERVPVTPAV 219
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
++ S GD+R+ + LQSA+
Sbjct: 220 LDTLVSASQGDLRRSITYLQSAS 242
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 92/221 (41%), Gaps = 76/221 (34%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T++++ + + ++ + L +++ + L G + S ++A
Sbjct: 30 VEKYRPKTIEDVSAQEHTVAVLR--------KTLTSTNLPHMLFYGPPGTGKTSTILALA 81
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST-----------KTMHKSSYKLII 207
F + VLELNASD+RGI IVR++I FA KT YK+II
Sbjct: 82 RQLFGPDNFRSRVLELNASDERGISIVREKIKNFARQTPRAQAVSSDGKTYPCPPYKIII 141
Query: 208 LDEADAMTNDAQNALRR------------------------------------------- 224
LDEAD+MT DAQ ALRR
Sbjct: 142 LDEADSMTQDAQAALRRIMENYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDPTSTS 201
Query: 225 ----------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAA 255
++PVTP ++ S GD+R+ + LQSA+
Sbjct: 202 SRLQHVADAERVPVTPAVLDTLVSASQGDLRRSITYLQSAS 242
>gi|294461102|gb|ADE76118.1| unknown [Picea sitchensis]
Length = 205
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/137 (59%), Positives = 102/137 (74%), Gaps = 4/137 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+R EN+LPHLL YGPPGTGKT+T+LA ARKLY +Q+ M+LELNASDDRGI
Sbjct: 53 DIIETIDRLTSENKLPHLLLYGPPGTGKTSTVLAVARKLYG-SQYQNMILELNASDDRGI 111
Query: 352 GIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
+VR QI FAST++ KSS KL++LDEADAMT DAQ +LRR++EK+T + RF +IC
Sbjct: 112 EVVRHQIQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFSLRRVMEKYTKSTRFVLIC 171
Query: 409 NYLSKIPPAIQSRCTRF 425
NY++KI PA F
Sbjct: 172 NYVNKIIPAFNQGALDF 188
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 79/127 (62%), Gaps = 12/127 (9%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +L ++ +H+DII TI+ E+ L L+L GT + + A+
Sbjct: 37 VEKYRPQSLADVAAHKDIIETIDRLTSENKLPHLLLYG-------PPGTGKTSTVLAVAR 89
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTND 217
++ + +LELNASDDRGI +VR QI FAST++ KSS KL++LDEADAMT D
Sbjct: 90 KLYGSQYQNMILELNASDDRGIEVVRHQIQDFASTQSFSFGAKSSVKLVLLDEADAMTKD 149
Query: 218 AQNALRR 224
AQ +LRR
Sbjct: 150 AQFSLRR 156
>gi|409046196|gb|EKM55676.1| hypothetical protein PHACADRAFT_144345 [Phanerochaete carnosa
HHB-10118-sp]
Length = 368
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 105/154 (68%), Gaps = 11/154 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + LPH+LFYGPPGTGKT+TILA AR+L+ F + VLELNASD+RGI IVR+
Sbjct: 46 LRRTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGPDNFRSRVLELNASDERGISIVRE 105
Query: 357 QIFQFAST-----------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
+I FA KT YK+IILDEAD+MT DAQ ALRRI+E + RFC
Sbjct: 106 KIKDFARQTPRAQAASSDDKTYPCPPYKIIILDEADSMTQDAQAALRRIMENYVRITRFC 165
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
++CNY+++I + SRC++FRF PLD++ +RL
Sbjct: 166 LVCNYVTRIIEPLASRCSKFRFKPLDNASTSARL 199
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 77/151 (50%), Gaps = 23/151 (15%)
Query: 89 EVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG 148
E + TI L VEKYRP T+D++ + + ++ + L +++ + L G
Sbjct: 11 EPAKHTIDPALQPWVEKYRPKTIDDVSAQEHTVAVLR--------RTLTSTNLPHMLFYG 62
Query: 149 TSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST--------- 195
+ S ++A F + VLELNASD+RGI IVR++I FA
Sbjct: 63 PPGTGKTSTILALARQLFGPDNFRSRVLELNASDERGISIVREKIKDFARQTPRAQAASS 122
Query: 196 --KTMHKSSYKLIILDEADAMTNDAQNALRR 224
KT YK+IILDEAD+MT DAQ ALRR
Sbjct: 123 DDKTYPCPPYKIIILDEADSMTQDAQAALRR 153
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RFC++CNY+++I + SRC++FRF PLD++ +RL + E +++
Sbjct: 155 MENYVRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNASTSARLAAIASAENIHIPDSV 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+I+ S GD+R+ + LQSA+
Sbjct: 215 IDTLINTSHGDLRRSITYLQSAS 237
>gi|123505671|ref|XP_001329029.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121911979|gb|EAY16806.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/134 (60%), Positives = 102/134 (76%), Gaps = 1/134 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I +FID+N LPHL F+GPPGTGKTTT +A + +LY + VLELNASD+RGI VR
Sbjct: 31 IKKFIDKNCLPHLCFHGPPGTGKTTTAIAISHQLYGN-DTSMSVLELNASDERGIDTVRM 89
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
+I FAS++++ KLIILDE+DAMT AQ ALRRI+E+FT+NVRF +ICNY K+ P
Sbjct: 90 RIKDFASSRSLFGPKIKLIILDESDAMTGAAQAALRRIMEQFTSNVRFILICNYPEKLIP 149
Query: 417 AIQSRCTRFRFGPL 430
A++SRCT FRF PL
Sbjct: 150 ALRSRCTEFRFQPL 163
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 113/245 (46%), Gaps = 62/245 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS LD++VSH+ ISTI+ I ++ L L + GT + A+
Sbjct: 10 VEKYRPSKLDDVVSHEACISTIKKFIDKNCLPHLC-------FHGPPGTGKTTTAIAISH 62
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ VLELNASD+RGI VR +I FAS++++ KLIILDE+DAMT AQ
Sbjct: 63 QLYGNDTSMSVLELNASDERGIDTVRMRIKDFASSRSLFGPKIKLIILDESDAMTGAAQA 122
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR KL
Sbjct: 123 ALRRIMEQFTSNVRFILICNYPEKLIPALRSRCTEFRFQPLPDEDAAKFLRHIADAEKLN 182
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+ G KA++ L GD+R+ +N++Q+ + ++ ++ E VY GYP ++ L L+
Sbjct: 183 MDEGGLKALLKLGIGDLRRSINLMQTTSMSNTKDITEANVYRCSGYPLPEDMARTLEQLI 242
Query: 288 NESMD 292
N+ +D
Sbjct: 243 NKPLD 247
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 107/199 (53%), Gaps = 29/199 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+FT+NVRF +ICNY K+ PA++SRCT FRF PL L ++ + EK+N+ G
Sbjct: 128 MEQFTSNVRFILICNYPEKLIPALRSRCTEFRFQPLPDEDAAKFLRHIADAEKLNMDEGG 187
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVS---- 116
KA++ L GD+R+ +N++Q+ + ++ ++ E ++ + + TL++L++
Sbjct: 188 LKALLKLGIGDLRRSINLMQTTSMSNTKDITEANVYRCSGYPLPEDMARTLEQLINKPLD 247
Query: 117 ------------------------HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
H ++ +E P +L +L+ +++ IE LA G+ E+
Sbjct: 248 EALNTLNDQVFNNGLSLLDVIRELHSQVV-LMEFPPLVLANLIERLAQIERCLAEGSPER 306
Query: 153 IQLSALIAAFNSARDKLEV 171
+Q +A+ AAF R ++E
Sbjct: 307 VQSAAIAAAFQMLRMEIEA 325
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
GL+L D++ E+ V +E P +L +L+ +++ IE LA G+ E++Q +A+ AAF R
Sbjct: 261 GLSLLDVIRELHSQVVLMEFPPLVLANLIERLAQIERCLAEGSPERVQSAAIAAAFQMLR 320
Query: 524 DKLEA 528
++EA
Sbjct: 321 MEIEA 325
>gi|67610162|ref|XP_667086.1| replication factor C3 [Cryptosporidium hominis TU502]
gi|54658182|gb|EAL36856.1| replication factor C3 [Cryptosporidium hominis]
Length = 377
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/178 (50%), Positives = 112/178 (62%), Gaps = 31/178 (17%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI +LPHLLF+GPPGTGKT+TI A ++ +Y ++ MVLELNASDDRGI
Sbjct: 25 DIINTIEKFISSGQLPHLLFHGPPGTGKTSTIHAISKCIYKDRKYQ-MVLELNASDDRGI 83
Query: 352 GIVRDQIFQF---ASTKTMHKS---------------------------SYKLIILDEAD 381
+VRD I F AST H + KLIILDEAD
Sbjct: 84 NVVRDAIKSFSESASTTLNHSGGTNSNIEYIEMSDVSTRNLDCNKSLCENIKLIILDEAD 143
Query: 382 AMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
MT+ AQ ALRRI+E+++ +VRFCIICNY++KI PA+QSRCTRFRF PL I +R+
Sbjct: 144 MMTSTAQMALRRIMERYSEHVRFCIICNYVNKITPALQSRCTRFRFSPLPIEDIRNRI 201
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 119/220 (54%), Gaps = 48/220 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ +VRFCIICNY++KITPA+QSRCTRFRF PL I +R+ + E++ VT +G
Sbjct: 157 MERYSEHVRFCIICNYVNKITPALQSRCTRFRFSPLPIEDIRNRISEIALSERIFVTREG 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA-------HADE--------------VNE------- 92
++++I S GDMRKVLN+LQS + + H D +NE
Sbjct: 217 QESLIKSSRGDMRKVLNVLQSCSMSNYGNIQKHKDSGELNGVSIEGLITYINEEMIHRIL 276
Query: 93 --------DTIFTLL-----VSRVEKYRPSTLDELVSHQDIISTI-------EIPESMLV 132
D IF +L S + S S QD ++ + P+ ++
Sbjct: 277 GIPTKSELDYIFGILSRESFSSGFSALQNSQNKNGYSTQDFVNGLYSKSMEANWPDEVVP 336
Query: 133 DLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVL 172
L+ +++DIEYRL+ G SE IQL+A+++ F+ R ++E L
Sbjct: 337 LLMRRLADIEYRLSRGASESIQLAAIVSCFHEVRMEMEKL 376
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 120/294 (40%), Gaps = 113/294 (38%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS L +L+SH+DII+TIE I L L+ + GT + + A+
Sbjct: 9 VEKYRPSGLQDLLSHKDIINTIEKFISSGQLPHLL-------FHGPPGTGKTSTIHAISK 61
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQF---ASTKTMHKS---------------- 201
R VLELNASDDRGI +VRD I F AST H
Sbjct: 62 CIYKDRKYQMVLELNASDDRGINVVRDAIKSFSESASTTLNHSGGTNSNIEYIEMSDVST 121
Query: 202 -----------SYKLIILDEADAMTNDAQNALRR-------------------------- 224
+ KLIILDEAD MT+ AQ ALRR
Sbjct: 122 RNLDCNKSLCENIKLIILDEADMMTSTAQMALRRIMERYSEHVRFCIICNYVNKITPALQ 181
Query: 225 ---------KLP------------------VTPDGKKAIIDLSDGDMRKVLNILQSAATA 257
LP VT +G++++I S GDMRKVLN+LQS + +
Sbjct: 182 SRCTRFRFSPLPIEDIRNRISEIALSERIFVTREGQESLIKSSRGDMRKVLNVLQSCSMS 241
Query: 258 -------HADE--------------VNEDTVYNSVGYPTKTEITNILRWLLNES 290
H D +NE+ ++ +G PTK+E+ I L ES
Sbjct: 242 NYGNIQKHKDSGELNGVSIEGLITYINEEMIHRILGIPTKSELDYIFGILSRES 295
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 33/44 (75%)
Query: 484 PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLE 527
P+ ++ L+ +++DIEYRL+ G SE IQL+A+++ F+ R ++E
Sbjct: 331 PDEVVPLLMRRLADIEYRLSRGASESIQLAAIVSCFHEVRMEME 374
>gi|66359384|ref|XP_626870.1| replication factor RFC3 AAA+ ATpase [Cryptosporidium parvum Iowa
II]
gi|46228358|gb|EAK89257.1| replication factor RFC3 AAA+ ATpase [Cryptosporidium parvum Iowa
II]
Length = 383
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/178 (50%), Positives = 112/178 (62%), Gaps = 31/178 (17%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI +LPHLLF+GPPGTGKT+TI A ++ +Y ++ MVLELNASDDRGI
Sbjct: 31 DIINTIEKFISSGQLPHLLFHGPPGTGKTSTIHAISKCIYKDRKYQ-MVLELNASDDRGI 89
Query: 352 GIVRDQIFQF---ASTKTMHKS---------------------------SYKLIILDEAD 381
+VRD I F AST H + KLIILDEAD
Sbjct: 90 NVVRDAIKSFSESASTTLNHSGGTNSNIEDIEMSDVSTRNLDCNKSLCENIKLIILDEAD 149
Query: 382 AMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
MT+ AQ ALRRI+E+++ +VRFCIICNY++KI PA+QSRCTRFRF PL I +R+
Sbjct: 150 MMTSTAQMALRRIMERYSEHVRFCIICNYVNKITPALQSRCTRFRFSPLPIEDIRNRI 207
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 120/220 (54%), Gaps = 48/220 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ +VRFCIICNY++KITPA+QSRCTRFRF PL I +R+ + E++ +T +G
Sbjct: 163 MERYSEHVRFCIICNYVNKITPALQSRCTRFRFSPLPIEDIRNRISEIALSERIFITREG 222
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA-------HADE--------------VNE------- 92
++++I S GDMRKVLN+LQS + + H D +NE
Sbjct: 223 QESLIKSSRGDMRKVLNVLQSCSMSNYGNIEKHKDSGELNGASIEGLITYINEEMIHRIL 282
Query: 93 --------DTIFTLL-----VSRVEKYRPSTLDELVSHQDIISTI-------EIPESMLV 132
D IF +L S + S + S QD ++ + P+ ++
Sbjct: 283 GIPTKSELDYIFGILSRESFSSGFSALQNSQNENGYSTQDFVNGLYSKSMEANWPDEVVP 342
Query: 133 DLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVL 172
L+ +++DIEYRL+ G SE IQL+A+++ F+ R ++E L
Sbjct: 343 LLMRRLADIEYRLSRGASESIQLAAIVSCFHEVRMEMEKL 382
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 120/295 (40%), Gaps = 113/295 (38%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS L +L+SH+DII+TIE I L L+ + GT + + A+
Sbjct: 15 VEKYRPSGLQDLLSHKDIINTIEKFISSGQLPHLL-------FHGPPGTGKTSTIHAISK 67
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQF---ASTKTMHKS---------------- 201
R VLELNASDDRGI +VRD I F AST H
Sbjct: 68 CIYKDRKYQMVLELNASDDRGINVVRDAIKSFSESASTTLNHSGGTNSNIEDIEMSDVST 127
Query: 202 -----------SYKLIILDEADAMTNDAQNALRR-------------------------- 224
+ KLIILDEAD MT+ AQ ALRR
Sbjct: 128 RNLDCNKSLCENIKLIILDEADMMTSTAQMALRRIMERYSEHVRFCIICNYVNKITPALQ 187
Query: 225 ---------KLP------------------VTPDGKKAIIDLSDGDMRKVLNILQSAATA 257
LP +T +G++++I S GDMRKVLN+LQS + +
Sbjct: 188 SRCTRFRFSPLPIEDIRNRISEIALSERIFITREGQESLIKSSRGDMRKVLNVLQSCSMS 247
Query: 258 -------HADE--------------VNEDTVYNSVGYPTKTEITNILRWLLNESM 291
H D +NE+ ++ +G PTK+E+ I L ES
Sbjct: 248 NYGNIEKHKDSGELNGASIEGLITYINEEMIHRILGIPTKSELDYIFGILSRESF 302
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+Q + E G + D + + P+ ++ L+ +++DIEYRL+ G SE IQL+A+
Sbjct: 309 LQNSQNENGYSTQDFVNGLYSKSMEANWPDEVVPLLMRRLADIEYRLSRGASESIQLAAI 368
Query: 516 IAAFNSARDKLE 527
++ F+ R ++E
Sbjct: 369 VSCFHEVRMEME 380
>gi|209880093|ref|XP_002141486.1| replication factor C, subunit 5 [Cryptosporidium muris RN66]
gi|209557092|gb|EEA07137.1| replication factor C, subunit 5, putative [Cryptosporidium muris
RN66]
Length = 371
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/163 (52%), Positives = 108/163 (66%), Gaps = 25/163 (15%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI+ +LPHLLF+GPPGTGKT+TI A ++ +Y + + MVLELNASDDRGI
Sbjct: 26 DIIGTIGKFINSGQLPHLLFHGPPGTGKTSTIHALSKFIYGEKK-KQMVLELNASDDRGI 84
Query: 352 GIVRDQIFQFASTKTMHKSSY------------------------KLIILDEADAMTNDA 387
+VRD I FA + + + + KLIILDEAD MT A
Sbjct: 85 NVVRDAIKSFAESASTNMDCFEDIQTRGESGTTNLIFNRNFWRNVKLIILDEADMMTPVA 144
Query: 388 QNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
Q ALRRI+EK++ +VRFCIICNY++KI PA+QSRCTRFRF PL
Sbjct: 145 QMALRRILEKYSEHVRFCIICNYVNKIIPALQSRCTRFRFSPL 187
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 113/223 (50%), Gaps = 55/223 (24%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ +VRFCIICNY++KI PA+QSRCTRFRF PL + + +++ + + E + + DG
Sbjct: 152 LEKYSEHVRFCIICNYVNKIIPALQSRCTRFRFSPLSINEMENKILVISKAEGIYTSKDG 211
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNE---DTIFTLLVSRVEKYRPSTLDELVSH 117
A+I+ + GDMRKVLNILQS + V+E FT++ Y ++E + H
Sbjct: 212 ITALIEAARGDMRKVLNILQSCHMDNYGNVHEYMSSCDFTIMNENTNTY----INEQMVH 267
Query: 118 -----------------------------------------QDIIS-------TIEIPES 129
QD ++ I P+S
Sbjct: 268 RTLGIPTSKEIDFLMNILTNKTFSEGTNALMNYYREYGYATQDFVNLLYRRLLKINWPDS 327
Query: 130 MLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVL 172
++ ++ +++DIEYRL+ G SE +Q SA+++ R +LE L
Sbjct: 328 VIPLIMKRLADIEYRLSCGASETVQFSAIVSCICEVRLELEKL 370
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 116/295 (39%), Gaps = 112/295 (37%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
L+ VEKYRP +L+EL+SH+DII TI I L L+ + GT + +
Sbjct: 6 LLPWVEKYRPESLEELISHKDIIGTIGKFINSGQLPHLL-------FHGPPGTGKTSTIH 58
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSY------------- 203
AL + K VLELNASDDRGI +VRD I FA + + + +
Sbjct: 59 ALSKFIYGEKKKQMVLELNASDDRGINVVRDAIKSFAESASTNMDCFEDIQTRGESGTTN 118
Query: 204 -----------KLIILDEADAMTNDAQNALRR---------------------------- 224
KLIILDEAD MT AQ ALRR
Sbjct: 119 LIFNRNFWRNVKLIILDEADMMTPVAQMALRRILEKYSEHVRFCIICNYVNKIIPALQSR 178
Query: 225 --KLPVTP------DGKKAIIDLSDG-----------------DMRKVLNILQSAATAHA 259
+ +P + K +I ++G DMRKVLNILQS H
Sbjct: 179 CTRFRFSPLSINEMENKILVISKAEGIYTSKDGITALIEAARGDMRKVLNILQS---CHM 235
Query: 260 DE-----------------------VNEDTVYNSVGYPTKTEITNILRWLLNESM 291
D +NE V+ ++G PT EI ++ L N++
Sbjct: 236 DNYGNVHEYMSSCDFTIMNENTNTYINEQMVHRTLGIPTSKEIDFLMNILTNKTF 290
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 462 EKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNS 521
E G A D + + + ++ P+S++ ++ +++DIEYRL+ G SE +Q SA+++
Sbjct: 303 EYGYATQDFVNLLYRRLLKINWPDSVIPLIMKRLADIEYRLSCGASETVQFSAIVSCICE 362
Query: 522 ARDKLE 527
R +LE
Sbjct: 363 VRLELE 368
>gi|403350390|gb|EJY74655.1| ATPase, AAA family protein [Oxytricha trifallax]
Length = 374
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 104/143 (72%), Gaps = 7/143 (4%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS 363
++PHL+FYGPPGTGKT+TILA +++L+ F VLELNASD+RGI IVR++I +FA
Sbjct: 79 GQVPHLMFYGPPGTGKTSTILALSKELFGHEFFKQRVLELNASDERGIAIVREKIKKFAQ 138
Query: 364 TK-TMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
K + H S ++IILDEAD+MT DAQ ALRRIIE+++TN RFCIICNY+SKI
Sbjct: 139 RKISKHPDSSFQCPPIQIIILDEADSMTIDAQAALRRIIEQYSTNTRFCIICNYISKIID 198
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
+ SRC +FRF P+ + RL
Sbjct: 199 PLASRCVKFRFSPIAKEAQIERL 221
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE+++TN RFCIICNY+SKI + SRC +FRF P+ + RL + E+E VNV D
Sbjct: 177 IEQYSTNTRFCIICNYISKIIDPLASRCVKFRFSPIAKEAQIERLKMICERENVNVASDN 236
Query: 61 K-KAIIDLSDGDMRKVLNILQSAATAHADEVN 91
A++D+S GD+R+ +N LQ+A++ ++N
Sbjct: 237 VFNALVDISAGDLRRSINTLQTASSFKLQQLN 268
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 105/224 (46%), Gaps = 69/224 (30%)
Query: 103 VEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
VEKYRPS ++E VSHQ +++S + +S+L V + + GT + + AL
Sbjct: 51 VEKYRPSKVEE-VSHQTEVVSALR--QSILTGQV---PHLMFYGPPGTGKTSTILALSKE 104
Query: 162 -FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSS------YKLIILDEADA 213
F K VLELNASD+RGI IVR++I +FA K + H S ++IILDEAD+
Sbjct: 105 LFGHEFFKQRVLELNASDERGIAIVREKIKKFAQRKISKHPDSSFQCPPIQIIILDEADS 164
Query: 214 MTNDAQNALRR------------------------------KLPVTPDGKK--------- 234
MT DAQ ALRR K +P K+
Sbjct: 165 MTIDAQAALRRIIEQYSTNTRFCIICNYISKIIDPLASRCVKFRFSPIAKEAQIERLKMI 224
Query: 235 ---------------AIIDLSDGDMRKVLNILQSAATAHADEVN 263
A++D+S GD+R+ +N LQ+A++ ++N
Sbjct: 225 CERENVNVASDNVFNALVDISAGDLRRSINTLQTASSFKLQQLN 268
>gi|325968175|ref|YP_004244367.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
gi|323707378|gb|ADY00865.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
Length = 338
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/144 (53%), Positives = 101/144 (70%), Gaps = 1/144 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ + + +PH+LFYGPPGTGKTT LA AR+LY A + VLELNASD+RGI +R
Sbjct: 29 RVKQLLKTGNMPHMLFYGPPGTGKTTMALAIARELYGDA-WRENVLELNASDERGITTIR 87
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T M K+ YKLIILDEAD MT+DAQ ALRR++E + RF +I NY+S+I
Sbjct: 88 ERVKEFARTAPMGKAPYKLIILDEADNMTSDAQQALRRMMEMYANVTRFILIANYVSRII 147
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC FRF PL ++ RL
Sbjct: 148 DPIQSRCAMFRFSPLPKDAVLGRL 171
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 114/242 (47%), Gaps = 65/242 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
VEKYRPS +D DII E+ E V +LK ++ + L GT + A+
Sbjct: 9 VEKYRPSRID------DIIDQEEVKER--VKQLLKTGNMPHMLFYGPPGTGKTTMALAIA 60
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
+ VLELNASD+RGI +R+++ +FA T M K+ YKLIILDEAD MT+DAQ
Sbjct: 61 RELYGDAWRENVLELNASDERGITTIRERVKEFARTAPMGKAPYKLIILDEADNMTSDAQ 120
Query: 220 NALRR-----------------------------------KLP----------------- 227
ALRR LP
Sbjct: 121 QALRRMMEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVLGRLRDIASREGV 180
Query: 228 -VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
VT + +AI D+S GDMRK +N LQ AATA A E+ + VY +VGY +I +++
Sbjct: 181 KVTDEALEAIWDISQGDMRKAINTLQ-AATATAREITPEVVYKTVGYIEPKDIVDLVNIA 239
Query: 287 LN 288
LN
Sbjct: 240 LN 241
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 30/189 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF +I NY+S+I IQSRC FRF PL ++ RL + +E V VT +
Sbjct: 127 MEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVLGRLRDIASREGVKVTDEA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL--------------------V 100
+AI D+S GDMRK +N LQ AATA A E+ + ++ + +
Sbjct: 187 LEAIWDISQGDMRKAINTLQ-AATATAREITPEVVYKTVGYIEPKDIVDLVNIALNGDFI 245
Query: 101 SRVEKYRPSTLDELVSHQDIISTIE---------IPESMLVDLVLKMSDIEYRLAAGTSE 151
+K R + VS +I+ I+ +P+ V++ +DI+YRL G+ E
Sbjct: 246 RARDKLRTLMYEHGVSGTEILRVIQRQIMSGAINVPDEAKVEIAETAADIDYRLTEGSDE 305
Query: 152 KIQLSALIA 160
+IQLSA +A
Sbjct: 306 EIQLSAFLA 314
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 455 KIQEIKIEKGLALTDILTEIS--LLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
K++ + E G++ T+IL I ++ + +P+ V++ +DI+YRL G+ E+IQL
Sbjct: 250 KLRTLMYEHGVSGTEILRVIQRQIMSGAINVPDEAKVEIAETAADIDYRLTEGSDEEIQL 309
Query: 513 SALIA 517
SA +A
Sbjct: 310 SAFLA 314
>gi|302690912|ref|XP_003035135.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune H4-8]
gi|300108831|gb|EFJ00233.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune H4-8]
Length = 376
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 105/156 (67%), Gaps = 11/156 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + LPH+LFYGPPGTGKT+TILA +R+L+ F + VLELNASD+RGI IVR+
Sbjct: 53 LQKALTSTNLPHMLFYGPPGTGKTSTILALSRQLFGPDNFRSRVLELNASDERGISIVRE 112
Query: 357 QIFQFASTKTMHKS-----------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
++ FA ++ YK+IILDEAD+MT DAQ ALRRI+E RFC
Sbjct: 113 KVKNFARQTPRAQAVASDGKEYPCPPYKIIILDEADSMTQDAQGALRRIMETHARITRFC 172
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
++CNY+++I + SRC++FRF PLDSS +RL Y
Sbjct: 173 LVCNYVTRIIEPLASRCSKFRFTPLDSSSAAARLSY 208
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%)
Query: 9 RFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLS 68
RFC++CNY+++I + SRC++FRF PLDSS +RL Y+ E V V+P +I S
Sbjct: 170 RFCLVCNYVTRIIEPLASRCSKFRFTPLDSSSAAARLSYIATNENVAVSPPVIDTLISTS 229
Query: 69 DGDMRKVLNILQSAA 83
GD+R+ + LQSA+
Sbjct: 230 GGDLRRAITYLQSAS 244
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 81/160 (50%), Gaps = 28/160 (17%)
Query: 80 QSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMS 139
Q AATA T+ L VEKYRP T+D++ + + +S ++ L +
Sbjct: 14 QQAATAQ-----RHTVDPALQPWVEKYRPKTIDDVSAQEHTVSVLQ--------KALTST 60
Query: 140 DIEYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST 195
++ + L G + S ++A F + VLELNASD+RGI IVR+++ FA
Sbjct: 61 NLPHMLFYGPPGTGKTSTILALSRQLFGPDNFRSRVLELNASDERGISIVREKVKNFARQ 120
Query: 196 KTMHKS-----------SYKLIILDEADAMTNDAQNALRR 224
++ YK+IILDEAD+MT DAQ ALRR
Sbjct: 121 TPRAQAVASDGKEYPCPPYKIIILDEADSMTQDAQGALRR 160
>gi|291244804|ref|XP_002742285.1| PREDICTED: replication factor C 4-like [Saccoglossus kowalevskii]
Length = 288
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/150 (53%), Positives = 111/150 (74%), Gaps = 7/150 (4%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + I+ ++LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 59 LKKSIEGSDLPNLLFYGPPGTGKTSTILAVARELFGNEMFRTRVLELNASDERGINVVRE 118
Query: 357 QIFQFA-----STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ +FA +T++ K YK+IILDEAD+MT AQ ALRR +EK T RFC+ICN
Sbjct: 119 KVKRFAQLSASATRSDGKPCPPYKIIILDEADSMTGAAQAALRRTMEKETKTTRFCLICN 178
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC +FRF PL +S++++RL
Sbjct: 179 YVSRIIGPLTSRCAKFRFKPLATSILLTRL 208
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 78/135 (57%), Gaps = 19/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP ++DE+ ++++ ++ ++ SD+ L G + S ++A
Sbjct: 38 VEKYRPKSVDEVAFQDEVVAVLKKS--------IEGSDLPNLLFYGPPGTGKTSTILAVA 89
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLIILDEA 211
F + + VLELNASD+RGI +VR+++ +FA +T++ K YK+IILDEA
Sbjct: 90 RELFGNEMFRTRVLELNASDERGINVVREKVKRFAQLSASATRSDGKPCPPYKIIILDEA 149
Query: 212 DAMTNDAQNALRRKL 226
D+MT AQ ALRR +
Sbjct: 150 DSMTGAAQAALRRTM 164
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 42/59 (71%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPD 59
+EK T RFC+ICNY+S+I + SRC +FRF PL +S++++RL + EQE VN + +
Sbjct: 164 MEKETKTTRFCLICNYVSRIIGPLTSRCAKFRFKPLATSILLTRLKGICEQENVNCSEE 222
>gi|134057264|emb|CAK96427.1| unnamed protein product [Aspergillus niger]
Length = 388
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 119/182 (65%), Gaps = 24/182 (13%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A+ L+ + + + +LELNASD+RGIGIVR+
Sbjct: 58 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVRE 117
Query: 357 QIFQFASTKTMHKSS-------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+I FA + H + +K+IILDEAD+MT DAQ+ALRR +E+++ R
Sbjct: 118 KIKNFARAQLTHSTGLGEEYLAQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITR 177
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEK 463
FC++CNY+++I + SRC++FRF LD++ RL++ K++ +++E
Sbjct: 178 FCLVCNYVTRIIEPLASRCSKFRFKALDNTAAGERLEH-----------IAKVENLRLED 226
Query: 464 GL 465
G+
Sbjct: 227 GV 228
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 25/137 (18%)
Query: 107 RPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA----F 162
RP TLD+ V+ QD + + + L+ S++ + L G + S ++A F
Sbjct: 41 RPKTLDD-VAAQDHTTKV-------LQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLF 92
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------------YKLIILD 209
+ + +LELNASD+RGIGIVR++I FA + H + +K+IILD
Sbjct: 93 GPSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGLGEEYLAQYPCPPFKIIILD 152
Query: 210 EADAMTNDAQNALRRKL 226
EAD+MT DAQ+ALRR +
Sbjct: 153 EADSMTQDAQSALRRTM 169
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF LD++ RL+++ + E + +
Sbjct: 169 MEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDNTAAGERLEHIAKVENLRLEDGV 228
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+I S+GDMR+ + +QSAA
Sbjct: 229 VDKLIACSEGDMRRAITYMQSAA 251
>gi|317027180|ref|XP_001400326.2| replication factor C subunit 2 [Aspergillus niger CBS 513.88]
Length = 389
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 119/182 (65%), Gaps = 24/182 (13%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A+ L+ + + + +LELNASD+RGIGIVR+
Sbjct: 59 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVRE 118
Query: 357 QIFQFASTKTMHKSS-------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+I FA + H + +K+IILDEAD+MT DAQ+ALRR +E+++ R
Sbjct: 119 KIKNFARAQLTHSTGLGEEYLAQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITR 178
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEK 463
FC++CNY+++I + SRC++FRF LD++ RL++ K++ +++E
Sbjct: 179 FCLVCNYVTRIIEPLASRCSKFRFKALDNTAAGERLEH-----------IAKVENLRLED 227
Query: 464 GL 465
G+
Sbjct: 228 GV 229
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 79/141 (56%), Gaps = 25/141 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TLD+ V+ QD + + + L+ S++ + L G + S ++A
Sbjct: 38 VEKYRPKTLDD-VAAQDHTTKV-------LQRTLQASNLPHMLFYGPPGTGKTSTILALA 89
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------------YKL 205
F + + +LELNASD+RGIGIVR++I FA + H + +K+
Sbjct: 90 KSLFGPSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGLGEEYLAQYPCPPFKI 149
Query: 206 IILDEADAMTNDAQNALRRKL 226
IILDEAD+MT DAQ+ALRR +
Sbjct: 150 IILDEADSMTQDAQSALRRTM 170
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF LD++ RL+++ + E + +
Sbjct: 170 MEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDNTAAGERLEHIAKVENLRLEDGV 229
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+I S+GDMR+ + +QSAA
Sbjct: 230 VDKLIACSEGDMRRAITYMQSAA 252
>gi|321264422|ref|XP_003196928.1| DNA replication factor (activator 1 subunit) [Cryptococcus gattii
WM276]
gi|317463406|gb|ADV25141.1| DNA replication factor (activator 1 subunit), putative
[Cryptococcus gattii WM276]
Length = 363
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 106/156 (67%), Gaps = 12/156 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + LPH+LFYGPPGTGKT+TILA AR+L+ F A VLELNASD+RGI +VR+
Sbjct: 42 LRKALASTNLPHMLFYGPPGTGKTSTILALARQLFGPDLFRARVLELNASDERGISVVRE 101
Query: 357 QIFQFASTKTMHKSS------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRF 404
+I FA H S +KLIILDEAD+MT DAQ+ALRRI+E ++ RF
Sbjct: 102 KIKSFARETPRHASGVSSDGKEYPCPPFKLIILDEADSMTQDAQSALRRIMETYSKITRF 161
Query: 405 CIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
C++CNY+++I + SRC++FRF PL+ +R++
Sbjct: 162 CLVCNYVTRIIEPLASRCSKFRFKPLEQESTRARME 197
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 19/139 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF PL+ +R++ + E E V P
Sbjct: 152 METYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLEQESTRARMEMIAENEGVQTDPGV 211
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDI 120
I++L+ GD+RK + LQ+A H S +E P+ + L H+
Sbjct: 212 LSLILELAGGDLRKAITYLQTAQRLH--------------SSIEP--PTPVSALSIHE-- 253
Query: 121 ISTIEIPESMLVDLVLKMS 139
IS + +PE ++ DL+ M
Sbjct: 254 ISGV-VPEDLITDLLAAMG 271
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 24/138 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T+D++ S + ++ + L +++ + L G + S ++A
Sbjct: 21 VEKYRPKTIDDVSSQDNTVAVLR--------KALASTNLPHMLFYGPPGTGKTSTILALA 72
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------------YKLI 206
F + VLELNASD+RGI +VR++I FA H S +KLI
Sbjct: 73 RQLFGPDLFRARVLELNASDERGISVVREKIKSFARETPRHASGVSSDGKEYPCPPFKLI 132
Query: 207 ILDEADAMTNDAQNALRR 224
ILDEAD+MT DAQ+ALRR
Sbjct: 133 ILDEADSMTQDAQSALRR 150
>gi|406695817|gb|EKC99116.1| DNA replication factor (activator 1 subunit) [Trichosporon asahii
var. asahii CBS 8904]
Length = 389
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 103/147 (70%), Gaps = 12/147 (8%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPH+LFYGPPGTGKT+TILA AR+L+ F + VLELNASD+RGI +VR++I FA
Sbjct: 51 LPHMLFYGPPGTGKTSTILALARQLFGPDLFKSRVLELNASDERGISVVREKIKTFARET 110
Query: 366 TMHKSS------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
H YKLIILDEAD+MT DAQ+ALRRI+E ++ RFC++CNY+++
Sbjct: 111 PRHNPGVASDGKEYPCPPYKLIILDEADSMTQDAQSALRRIMETYSRITRFCLVCNYVTR 170
Query: 414 IPPAIQSRCTRFRFGPLDSSLIMSRLD 440
I + SRC++FRF PL+ S +R++
Sbjct: 171 IIEPVASRCSKFRFRPLEQSSSQARME 197
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 75/147 (51%), Gaps = 24/147 (16%)
Query: 94 TIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
TI L VEKYRP T+D++ S + ++ + L +++ + L G
Sbjct: 12 TIDPKLQPWVEKYRPKTIDDVSSQDNTVAVLR--------KALMSTNLPHMLFYGPPGTG 63
Query: 154 QLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------- 202
+ S ++A F K VLELNASD+RGI +VR++I FA H
Sbjct: 64 KTSTILALARQLFGPDLFKSRVLELNASDERGISVVREKIKTFARETPRHNPGVASDGKE 123
Query: 203 -----YKLIILDEADAMTNDAQNALRR 224
YKLIILDEAD+MT DAQ+ALRR
Sbjct: 124 YPCPPYKLIILDEADSMTQDAQSALRR 150
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 54/86 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF PL+ S +R++ + E E V P
Sbjct: 152 METYSRITRFCLVCNYVTRIIEPVASRCSKFRFRPLEQSSSQARMEMIAENEGVQADPGV 211
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH 86
+ I+ L+ GD+RK + LQ+A H
Sbjct: 212 LELILQLAGGDLRKAITYLQTAQRLH 237
>gi|164658640|ref|XP_001730445.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
gi|159104341|gb|EDP43231.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
Length = 353
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 76/140 (54%), Positives = 100/140 (71%), Gaps = 6/140 (4%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPH+LFYGPPGTGKT+TILA AR+LY + VLELNASD+RGI +VRD+I FA
Sbjct: 40 LPHMLFYGPPGTGKTSTILALARQLYGPELMRSRVLELNASDERGISVVRDKIKSFARAA 99
Query: 366 T------MHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
YK++ILDEAD+MT DAQ ALRRI+E+++ RFC++CNY+++I +
Sbjct: 100 VSAPNPDYPSPPYKIVILDEADSMTQDAQGALRRIMEQYSRITRFCLVCNYVTRIIEPVA 159
Query: 420 SRCTRFRFGPLDSSLIMSRL 439
SRC++FRF PLD + +RL
Sbjct: 160 SRCSKFRFRPLDVASTEARL 179
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 18/132 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VE+YRP ++DE+ S Q ++ + L +++ + L G + S ++A
Sbjct: 10 VERYRPKSIDEVASQQHAVNVLR--------KALTSANLPHMLFYGPPGTGKTSTILALA 61
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKT------MHKSSYKLIILDEAD 212
+ + VLELNASD+RGI +VRD+I FA YK++ILDEAD
Sbjct: 62 RQLYGPELMRSRVLELNASDERGISVVRDKIKSFARAAVSAPNPDYPSPPYKIVILDEAD 121
Query: 213 AMTNDAQNALRR 224
+MT DAQ ALRR
Sbjct: 122 SMTQDAQGALRR 133
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF PLD + +RL ++ + E + + PD
Sbjct: 135 MEQYSRITRFCLVCNYVTRIIEPVASRCSKFRFRPLDVASTEARLLHIAQMEGLRLNPDL 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+I S+GDMR+ + LQS A
Sbjct: 195 VPVLIRSSEGDMRRSITYLQSIA 217
>gi|167538762|ref|XP_001751040.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770449|gb|EDQ84145.1| predicted protein [Monosiga brevicollis MX1]
Length = 331
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 117/182 (64%), Gaps = 25/182 (13%)
Query: 259 ADEVNEDTVYNSVGYP-TKTEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGT 317
D++N D + +SV P + + L L++ + ++ I RFI+E+ LPHLL YGPPGT
Sbjct: 8 GDDINTDPIMHSVNLPWVEKYRPSSLDQLISHT-EIINTIQRFINEDRLPHLLLYGPPGT 66
Query: 318 GKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIIL 377
GKT+TI ACA++LY K + MVLE+ + S +KL+IL
Sbjct: 67 GKTSTIKACAKQLYGKG-YKRMVLEVR----------------------LVTSGFKLVIL 103
Query: 378 DEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMS 437
DEADAM+N+AQ ALRR+IE++T + RFC+ICNY+SKI PA+QSRCTRFRF PL + S
Sbjct: 104 DEADAMSNEAQAALRRVIEQYTKHTRFCLICNYVSKISPAVQSRCTRFRFAPLSEDELKS 163
Query: 438 RL 439
++
Sbjct: 164 QV 165
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 108/203 (53%), Gaps = 36/203 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T + RFC+ICNY+SKI+PA+QSRCTRFRF PL + S++ VI+ E + VTP+G
Sbjct: 121 IEQYTKHTRFCLICNYVSKISPAVQSRCTRFRFAPLSEDELKSQVQRVIKAENLTVTPEG 180
Query: 61 KKAIIDLSDGDMRKVLNILQ--------------------------SAATAHADEVNEDT 94
A+ L+DGDMRK LNILQ AT D++
Sbjct: 181 IDALTRLADGDMRKALNILQVSVFGDLFATSTALAFGDIDARAVYTCTATPQPDDIQSIV 240
Query: 95 IFTLLVSRVEKYR---PSTLDELVSHQDIIS-------TIEIPESMLVDLVLKMSDIEYR 144
+ L E Y+ ++ ++ QDI+ I+ P + L+ + +DIE+R
Sbjct: 241 SWMLEKPVAEAYKLISEVKTEQGLALQDILKEVHRFMHNIDFPTDCKILLLERFADIEHR 300
Query: 145 LAAGTSEKIQLSALIAAFNSARD 167
LA G +E +QLS +IA F R+
Sbjct: 301 LADGATESLQLSDMIATFQRVRE 323
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 113/277 (40%), Gaps = 96/277 (34%)
Query: 87 ADEVNEDTIF-TLLVSRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEY 143
D++N D I ++ + VEKYRPS+LD+L+SH +II+TI+ I E L L+L
Sbjct: 8 GDDINTDPIMHSVNLPWVEKYRPSSLDQLISHTEIINTIQRFINEDRLPHLLLYGP---- 63
Query: 144 RLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSY 203
GT + + A K VLE+ + S +
Sbjct: 64 ---PGTGKTSTIKACAKQLYGKGYKRMVLEVR----------------------LVTSGF 98
Query: 204 KLIILDEADAMTNDAQNALRR--------------------------------------- 224
KL+ILDEADAM+N+AQ ALRR
Sbjct: 99 KLVILDEADAMSNEAQAALRRVIEQYTKHTRFCLICNYVSKISPAVQSRCTRFRFAPLSE 158
Query: 225 --------------KLPVTPDGKKAIIDLSDGDMRKVLNILQ----------SAATAHAD 260
L VTP+G A+ L+DGDMRK LNILQ S A A D
Sbjct: 159 DELKSQVQRVIKAENLTVTPEGIDALTRLADGDMRKALNILQVSVFGDLFATSTALAFGD 218
Query: 261 EVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYKI 297
++ VY P +I +I+ W+L + + YK+
Sbjct: 219 -IDARAVYTCTATPQPDDIQSIVSWMLEKPVAEAYKL 254
>gi|401884137|gb|EJT48309.1| DNA replication factor (activator 1 subunit) [Trichosporon asahii
var. asahii CBS 2479]
Length = 389
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 103/147 (70%), Gaps = 12/147 (8%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPH+LFYGPPGTGKT+TILA AR+L+ F + VLELNASD+RGI +VR++I FA
Sbjct: 51 LPHMLFYGPPGTGKTSTILALARQLFGPDLFKSRVLELNASDERGISVVREKIKTFARET 110
Query: 366 TMHKSS------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
H YKLIILDEAD+MT DAQ+ALRRI+E ++ RFC++CNY+++
Sbjct: 111 PRHNPGVASDGKEYPCPPYKLIILDEADSMTQDAQSALRRIMETYSRITRFCLVCNYVTR 170
Query: 414 IPPAIQSRCTRFRFGPLDSSLIMSRLD 440
I + SRC++FRF PL+ S +R++
Sbjct: 171 IIEPVASRCSKFRFRPLEQSSSQARME 197
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 75/147 (51%), Gaps = 24/147 (16%)
Query: 94 TIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
TI L VEKYRP T+D++ S + ++ + L +++ + L G
Sbjct: 12 TIDPKLQPWVEKYRPKTIDDVSSQDNTVAVLR--------KALMSTNLPHMLFYGPPGTG 63
Query: 154 QLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------- 202
+ S ++A F K VLELNASD+RGI +VR++I FA H
Sbjct: 64 KTSTILALARQLFGPDLFKSRVLELNASDERGISVVREKIKTFARETPRHNPGVASDGKE 123
Query: 203 -----YKLIILDEADAMTNDAQNALRR 224
YKLIILDEAD+MT DAQ+ALRR
Sbjct: 124 YPCPPYKLIILDEADSMTQDAQSALRR 150
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 54/86 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF PL+ S +R++ + E E V P
Sbjct: 152 METYSRITRFCLVCNYVTRIIEPVASRCSKFRFRPLEQSSSQARMEMIAENEGVQADPGV 211
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH 86
+ I+ L+ GD+RK + LQ+A H
Sbjct: 212 LELILQLAGGDLRKAITYLQTAQRLH 237
>gi|169767788|ref|XP_001818365.1| replication factor C subunit 2 [Aspergillus oryzae RIB40]
gi|83766220|dbj|BAE56363.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870557|gb|EIT79737.1| replication factor C, subunit RFC4 [Aspergillus oryzae 3.042]
Length = 391
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 107/156 (68%), Gaps = 13/156 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A+ L+ A + + +LELNASD+RGI IVR+
Sbjct: 60 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIAIVRE 119
Query: 357 QIFQFASTKTMHKSS-------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
++ FA + H + +K+IILDEAD+MT DAQ+ALRR +E ++ R
Sbjct: 120 KVKDFARVQLSHPTGVDKSYFEKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITR 179
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
FC++CNY+++I + SRC++FRF PLD+S RL
Sbjct: 180 FCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRL 215
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 25/141 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TLD+ V+ QD + + + L+ S++ + L G + S ++A
Sbjct: 39 VEKYRPKTLDD-VAAQDHTTNV-------LQRTLQASNLPHMLFYGPPGTGKTSTILALA 90
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------------YKL 205
F A + +LELNASD+RGI IVR+++ FA + H + +K+
Sbjct: 91 KSLFGPALYRSRILELNASDERGIAIVREKVKDFARVQLSHPTGVDKSYFEKYPCPPFKI 150
Query: 206 IILDEADAMTNDAQNALRRKL 226
IILDEAD+MT DAQ+ALRR +
Sbjct: 151 IILDEADSMTQDAQSALRRTM 171
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 17/145 (11%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF PLD+S RL + + E + +
Sbjct: 171 METYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRLAQIAKLENLELEDGV 230
Query: 61 KKAIIDLSDGDMRKVLNILQSAA-------TAHADEVNEDTIFTLLVSRVEKYRPSTLDE 113
+I SDGD+R+ + +QS A + + ED T S+V R ++E
Sbjct: 231 VDKLIQCSDGDLRRAITYMQSGARLVGATGNSGRQDGGEDAEMTDASSQVITVR--MVEE 288
Query: 114 LVSHQDIISTIEIPESMLVDLVLKM 138
+ IPES+L LV M
Sbjct: 289 IAG--------VIPESVLDQLVQAM 305
>gi|303388295|ref|XP_003072382.1| DNA replication factor C small subunit [Encephalitozoon
intestinalis ATCC 50506]
gi|303301522|gb|ADM11022.1| DNA replication factor C small subunit [Encephalitozoon
intestinalis ATCC 50506]
Length = 305
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 144/277 (51%), Gaps = 71/277 (25%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS 363
N++P++LFYGPPGTGKTT+I A A L + VLELNASD+RGI VR+ I +FAS
Sbjct: 34 NKIPNMLFYGPPGTGKTTSIRAIANNLP-----RSCVLELNASDERGIATVRETIKEFAS 88
Query: 364 TKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCT 423
T + + KL+ILDEAD M+ DAQNALRRIIE F+ N RFC+I N+ KI P I SRCT
Sbjct: 89 T---YSKTTKLVILDEADMMSRDAQNALRRIIEDFSANARFCLIANHSRKIIPPILSRCT 145
Query: 424 RFRFGPLD--SSLIMS-------------------------RLDYDDISFFNIIIWYIKI 456
+FRFGP++ S I R +D+ ++ + I +
Sbjct: 146 KFRFGPIEDTESRIKEICKKENIKYSEEGIKGIAEISEGDMRKAVNDVQGISVSLGPISL 205
Query: 457 QEIKIEKGLALTDILTE----------------------------------ISLLVHRLE 482
+ ++ G+A D+ E +S +V +
Sbjct: 206 ENVRKFNGVAPIDVYEELFENLKTMSMADLRVKCEELKYEHGMDSDDLLKNLSKMVRKSN 265
Query: 483 IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 519
+ E M + + +M DIEYR + G SEK+Q A+I+ F
Sbjct: 266 MKEKMRI--LKEMGDIEYRRSIGCSEKVQTDAIISVF 300
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 99/188 (52%), Gaps = 30/188 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE F+ N RFC+I N+ KI P I SRCT+FRFGP++ + SR+ + ++E + + +G
Sbjct: 117 IEDFSANARFCLIANHSRKIIPPILSRCTKFRFGPIEDT--ESRIKEICKKENIKYSEEG 174
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-------------------DEVNED-TIFTLLV 100
K I ++S+GDMRK +N +Q + + +E+ E+ ++
Sbjct: 175 IKGIAEISEGDMRKAVNDVQGISVSLGPISLENVRKFNGVAPIDVYEELFENLKTMSMAD 234
Query: 101 SRVE----KYRPS--TLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
RV+ KY + D L + ++ + E M + + +M DIEYR + G SEK+Q
Sbjct: 235 LRVKCEELKYEHGMDSDDLLKNLSKMVRKSNMKEKMRI--LKEMGDIEYRRSIGCSEKVQ 292
Query: 155 LSALIAAF 162
A+I+ F
Sbjct: 293 TDAIISVF 300
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 75/121 (61%), Gaps = 12/121 (9%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP +L ++V +++I++ ++ + K+ ++ + GT + + A+ A N
Sbjct: 7 EKYRPESLQQVVGNREIVAALK-----SISSTNKIPNMLFYGPPGTGKTTSIRAI--ANN 59
Query: 164 SARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALR 223
R VLELNASD+RGI VR+ I +FAST + + KL+ILDEAD M+ DAQNALR
Sbjct: 60 LPRSC--VLELNASDERGIATVRETIKEFAST---YSKTTKLVILDEADMMSRDAQNALR 114
Query: 224 R 224
R
Sbjct: 115 R 115
>gi|327311922|ref|YP_004338819.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326948401|gb|AEA13507.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 322
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 101/146 (69%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ +PHLLFYGPPGTGKTT L AR+LY A + LELNASD+RGI ++R
Sbjct: 27 RLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGDA-WRENTLELNASDERGINVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + RF ++ NY+S I
Sbjct: 86 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEMYANTTRFILLANYVSGII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSRC FRF PL ++SRL +
Sbjct: 146 EPIQSRCAIFRFSPLPKEAVLSRLRF 171
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 40/193 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF ++ NY+S I IQSRC FRF PL ++SRL ++ EQE V ++ +
Sbjct: 125 MEMYANTTRFILLANYVSGIIEPIQSRCAIFRFSPLPKEAVLSRLRFIAEQEGVKISQEA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKY-RPSTLDELVS--- 116
AI D + GDMR+ + LQ A++ V+E+ V++ Y PS L ++++
Sbjct: 185 LDAIFDFTQGDMRRAITALQ-IASSMTKAVDEEA-----VAKALGYVSPSMLRQIIAEAI 238
Query: 117 -----------------------------HQDIISTIEIPESMLVDLVLKMSDIEYRLAA 147
H++++ +++PE + DL ++S Y +
Sbjct: 239 GGSFSKAMSQIYGLVADGGVGELELVRQIHREVLR-LDVPEHLKPDLAFEVSKAHYAILR 297
Query: 148 GTSEKIQLSALIA 160
G + +Q+ L+A
Sbjct: 298 GANGLLQIYGLLA 310
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 63/235 (26%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP + +E+V +++ ++ L + V M + + GT + L
Sbjct: 8 EKYRPRSFEEVVDLEEV-------KARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARE 60
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ A
Sbjct: 61 LYGDAWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQA 120
Query: 222 LRR-----------------------------------KLP------------------V 228
LRR LP +
Sbjct: 121 LRRIMEMYANTTRFILLANYVSGIIEPIQSRCAIFRFSPLPKEAVLSRLRFIAEQEGVKI 180
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
+ + AI D + GDMR+ + LQ A++ V+E+ V ++GY + + + I+
Sbjct: 181 SQEALDAIFDFTQGDMRRAITALQ-IASSMTKAVDEEAVAKALGYVSPSMLRQII 234
>gi|325181066|emb|CCA15478.1| replication factor C subunit 4 putative [Albugo laibachii Nc14]
Length = 333
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 108/147 (73%), Gaps = 8/147 (5%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTK-AQFNAMVLELNASDDRGIGIVRDQIF 359
I +LPHLLFYGPPGTGKT+TI+A AR+LY + N LELNASDDRGI +VR+++
Sbjct: 38 IASGQLPHLLFYGPPGTGKTSTIVAVARELYGNDFRKNGRYLELNASDDRGIKVVREKVK 97
Query: 360 QFA-----STKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
FA S+++M ++K+I+LDEAD+MTNDAQ+ALRR++E ++ RFC+ICNY+S+I
Sbjct: 98 LFAQGAINSSESM--PAFKIIVLDEADSMTNDAQSALRRMMEDYSKVTRFCLICNYVSRI 155
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLDY 441
I SRC +FRF PL + +RL Y
Sbjct: 156 IDPIASRCVKFRFSPLTKESMAARLSY 182
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 106/250 (42%), Gaps = 67/250 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP ++++ + +++T+ I L L+ G + I A
Sbjct: 13 IEKYRPKVINDISHQEHVVATLRQSIASGQLPHLLFYGPP-----GTGKTSTIVAVAREL 67
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSSYKLIILDEADAMT 215
N R LELNASDDRGI +VR+++ FA S+++M ++K+I+LDEAD+MT
Sbjct: 68 YGNDFRKNGRYLELNASDDRGIKVVREKVKLFAQGAINSSESM--PAFKIIVLDEADSMT 125
Query: 216 NDAQNALRRKL---------------------------------PVTPDGKKAIIDL--- 239
NDAQ+ALRR + P+T + A +
Sbjct: 126 NDAQSALRRMMEDYSKVTRFCLICNYVSRIIDPIASRCVKFRFSPLTKESMAARLSYIGS 185
Query: 240 -----------------SDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNI 282
++GD+RK +N++QSA E+ D + G K + N
Sbjct: 186 QENLRLDDDIIDTLLDCANGDLRKAINLMQSARQTGGKELTNDEIVAVAGLAPKELLENF 245
Query: 283 LRWLLNESMD 292
+ + S D
Sbjct: 246 WKAIAGNSFD 255
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 59/98 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+S+I I SRC +FRF PL + +RL Y+ QE + + D
Sbjct: 136 MEDYSKVTRFCLICNYVSRIIDPIASRCVKFRFSPLTKESMAARLSYIGSQENLRLDDDI 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
++D ++GD+RK +N++QSA E+ D I +
Sbjct: 196 IDTLLDCANGDLRKAINLMQSARQTGGKELTNDEIVAV 233
>gi|331215451|ref|XP_003320406.1| replication factor C subunit 2/4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309299396|gb|EFP75987.1| replication factor C subunit 2/4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 382
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 107/149 (71%), Gaps = 6/149 (4%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+++ ++ +LPH+LFYGPPGTGKT+TILA AR L+ + VLELNASD+RGI +VR+
Sbjct: 55 LSKALNRADLPHMLFYGPPGTGKTSTILALARDLFGPELMKSRVLELNASDERGISVVRE 114
Query: 357 QIFQFA------STKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+I FA +T +YK+IILDEAD+MT DAQ+ALRRI+E ++ RFC+ICNY
Sbjct: 115 KIKNFAKVSISPATSGYPCPAYKIIILDEADSMTQDAQSALRRIMENYSKITRFCLICNY 174
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+++I I SRC++FRF PL S S+L
Sbjct: 175 VTRIIEPIVSRCSKFRFKPLSVSGTRSKL 203
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 72/132 (54%), Gaps = 18/132 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
+EKYRP +++ + + + ++ L +D+ + L G + S ++A
Sbjct: 34 IEKYRPKSIESVQGQEGT--------TKILSKALNRADLPHMLFYGPPGTGKTSTILALA 85
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA------STKTMHKSSYKLIILDEAD 212
F K VLELNASD+RGI +VR++I FA +T +YK+IILDEAD
Sbjct: 86 RDLFGPELMKSRVLELNASDERGISVVREKIKNFAKVSISPATSGYPCPAYKIIILDEAD 145
Query: 213 AMTNDAQNALRR 224
+MT DAQ+ALRR
Sbjct: 146 SMTQDAQSALRR 157
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I I SRC++FRF PL S S+L + E + ++ +
Sbjct: 159 MENYSKITRFCLICNYVTRIIEPIVSRCSKFRFKPLSVSGTRSKLTEISTLESIKISDNV 218
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEV 90
++I +S GD+R+ + LQSA+ A +DE+
Sbjct: 219 LDSLISISAGDLRRSITFLQSASKLATSDEI 249
>gi|401825330|ref|XP_003886760.1| replication factor C small subunit [Encephalitozoon hellem ATCC
50504]
gi|392997916|gb|AFM97779.1| replication factor C small subunit [Encephalitozoon hellem ATCC
50504]
Length = 308
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 103/284 (36%), Positives = 146/284 (51%), Gaps = 71/284 (25%)
Query: 302 DENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQF 361
D ++P++LFYGPPGTGKTT+I A A L + VLELNASD+RGI VR+ I F
Sbjct: 32 DAGKIPNMLFYGPPGTGKTTSIRAIANSLP-----RSCVLELNASDERGIATVRETIKDF 86
Query: 362 ASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSR 421
AST + KL+ILDEAD M+ DAQNALRRIIE F+ N RFC+I N+ KI P I SR
Sbjct: 87 AST---YSKVTKLVILDEADMMSRDAQNALRRIIEDFSANTRFCLIANHSKKIIPPILSR 143
Query: 422 CTRFRFGPLDS------------------------------------------SLIMSRL 439
CT+FRFGP++ SL + +
Sbjct: 144 CTKFRFGPIEGTEGRIEEICKREGIRYTSKGITALAKISEGDMRKAVNDVQGISLSLGVV 203
Query: 440 DYDDISFFNIII-------------------WYIKIQEIKIEKGLALTDILTEISLLVHR 480
D +++ FN I +++++K E G+ ++ +S +V +
Sbjct: 204 DEENVHKFNGIAPVQVYEELFMDLKSMSMSELRTRLEDLKYEYGMDCNALIENLSGIVRK 263
Query: 481 LEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
+ M ++ +M DIE R++ G +EK+QL A+I+ F RD
Sbjct: 264 SRMRNKM--KMLKEMGDIERRMSIGCNEKLQLDAIISVFILNRD 305
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 104/192 (54%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE F+ N RFC+I N+ KI P I SRCT+FRFGP++ + R++ + ++E + T G
Sbjct: 117 IEDFSANTRFCLIANHSKKIIPPILSRCTKFRFGPIEGT--EGRIEEICKREGIRYTSKG 174
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL-LVSRVEKY-------RPSTLD 112
A+ +S+GDMRK +N +Q + + V+E+ + ++ V+ Y + ++
Sbjct: 175 ITALAKISEGDMRKAVNDVQGISLSLG-VVDEENVHKFNGIAPVQVYEELFMDLKSMSMS 233
Query: 113 ELVSH---------QDIISTIE-----IPESML---VDLVLKMSDIEYRLAAGTSEKIQL 155
EL + D + IE + +S + + ++ +M DIE R++ G +EK+QL
Sbjct: 234 ELRTRLEDLKYEYGMDCNALIENLSGIVRKSRMRNKMKMLKEMGDIERRMSIGCNEKLQL 293
Query: 156 SALIAAFNSARD 167
A+I+ F RD
Sbjct: 294 DAIISVFILNRD 305
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 73/121 (60%), Gaps = 12/121 (9%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP +L E+V ++++++ ++ + D K+ ++ + GT + + A+ +
Sbjct: 7 EKYRPRSLLEVVGNREVVAALQ----SIAD-AGKIPNMLFYGPPGTGKTTSIRAIANSLP 61
Query: 164 SARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALR 223
+ VLELNASD+RGI VR+ I FAST + KL+ILDEAD M+ DAQNALR
Sbjct: 62 RSC----VLELNASDERGIATVRETIKDFAST---YSKVTKLVILDEADMMSRDAQNALR 114
Query: 224 R 224
R
Sbjct: 115 R 115
>gi|389749254|gb|EIM90431.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 379
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 105/156 (67%), Gaps = 11/156 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + LPH+LFYGPPGTGKT+TILA +R+L+ F + VLELNASD+RGI IVR+
Sbjct: 49 LEKTLTSTNLPHMLFYGPPGTGKTSTILALSRQLFGPDNFRSRVLELNASDERGIAIVRE 108
Query: 357 QIFQFAST-----------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
+I FA K YK+IILDEAD+MT DAQ ALRRI+E + RFC
Sbjct: 109 KIKNFARQTPRAQAVSSDGKAYPCPPYKIIILDEADSMTQDAQAALRRIMETYAHITRFC 168
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
++CNY+++I + SRC++FRF PLD S +RL++
Sbjct: 169 LVCNYVTRIIEPLASRCSKFRFKPLDDSSSTNRLEH 204
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 59/95 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RFC++CNY+++I + SRC++FRF PLD S +RL+++ E++ V PD
Sbjct: 158 METYAHITRFCLVCNYVTRIIEPLASRCSKFRFKPLDDSSSTNRLEHIALSEQLRVKPDV 217
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
A+I S GD+R+ + LQSAA A E TI
Sbjct: 218 FSALISTSGGDLRRAITYLQSAARLSAASETETTI 252
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 108/257 (42%), Gaps = 79/257 (30%)
Query: 79 LQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKM 138
+Q + A ++V+ DT L VEKYRP T++++ + + I++ +E L
Sbjct: 7 VQPSRKATKEQVSADTN---LQPWVEKYRPKTIEDVSAQEHIVAVLE--------KTLTS 55
Query: 139 SDIEYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS 194
+++ + L G + S ++A F + VLELNASD+RGI IVR++I FA
Sbjct: 56 TNLPHMLFYGPPGTGKTSTILALSRQLFGPDNFRSRVLELNASDERGIAIVREKIKNFAR 115
Query: 195 T-----------KTMHKSSYKLIILDEADAMTNDAQNALRR------------------- 224
K YK+IILDEAD+MT DAQ ALRR
Sbjct: 116 QTPRAQAVSSDGKAYPCPPYKIIILDEADSMTQDAQAALRRIMETYAHITRFCLVCNYVT 175
Query: 225 ----------------------------------KLPVTPDGKKAIIDLSDGDMRKVLNI 250
+L V PD A+I S GD+R+ +
Sbjct: 176 RIIEPLASRCSKFRFKPLDDSSSTNRLEHIALSEQLRVKPDVFSALISTSGGDLRRAITY 235
Query: 251 LQSAATAHADEVNEDTV 267
LQSAA A E T+
Sbjct: 236 LQSAARLSAASETETTI 252
>gi|212224565|ref|YP_002307801.1| DNA replication ATPase [Thermococcus onnurineus NA1]
gi|212009522|gb|ACJ16904.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1]
Length = 326
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 103/146 (70%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++ +PHLLF GPPG GKTT LA AR+L+ + + LELNASD+RGI ++R
Sbjct: 36 RLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE-HWRHNFLELNASDERGINVIR 94
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA TK + +S+K+I LDEADA+T DAQ ALRR +E F+TNVRF + CNY SKI
Sbjct: 95 EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSTNVRFILSCNYSSKII 154
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSRC FRF PL+ + I R+ Y
Sbjct: 155 EPIQSRCAIFRFRPLNDNDIAKRIKY 180
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 105/190 (55%), Gaps = 30/190 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+TNVRF + CNY SKI IQSRC FRF PL+ + I R+ Y+ E E + +T DG
Sbjct: 134 MEMFSTNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDNDIAKRIKYIAENEGLELTEDG 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRV----------------- 103
+A++ +++GD+R+ +N+LQ+AA A ++ ++ +F L+ SR
Sbjct: 194 LQALLYVAEGDLRRAINVLQAAA-ALDRKITDENVF-LVASRARPEDVREMMNLALEGNF 251
Query: 104 ----EKYRPSTLDELVSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
EK R L + +S +D+ + + IPE V L K+ + +RL G +E
Sbjct: 252 LKAREKLREILLKQGLSGEDVLIQMHKEVFNLTIPEDRKVALADKIGEYNFRLVEGANEM 311
Query: 153 IQLSALIAAF 162
IQL AL+A F
Sbjct: 312 IQLEALLAQF 321
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 100/213 (46%), Gaps = 70/213 (32%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP L+++V + I+ ++ +K + + L AG + AA
Sbjct: 16 VEKYRPQRLEDIVGQEHIVKRLK--------HYVKTGSMPHLLFAGPP---GVGKTTAAL 64
Query: 163 NSARD------KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
AR+ + LELNASD+RGI ++R+++ +FA TK + +S+K+I LDEADA+T
Sbjct: 65 ALARELFGEHWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ 124
Query: 217 DAQNALRRKL---------------------PV--------------------------- 228
DAQ ALRR + P+
Sbjct: 125 DAQQALRRTMEMFSTNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDNDIAKRIKYIAEN 184
Query: 229 -----TPDGKKAIIDLSDGDMRKVLNILQSAAT 256
T DG +A++ +++GD+R+ +N+LQ+AA
Sbjct: 185 EGLELTEDGLQALLYVAEGDLRRAINVLQAAAA 217
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
K++EI +++GL+ D+L ++ V L IPE V L K+ + +RL G +E IQL A
Sbjct: 257 KLREILLKQGLSGEDVLIQMHKEVFNLTIPEDRKVALADKIGEYNFRLVEGANEMIQLEA 316
Query: 515 LIAAF 519
L+A F
Sbjct: 317 LLAQF 321
>gi|260939858|ref|XP_002614229.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC 42720]
gi|238852123|gb|EEQ41587.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC 42720]
Length = 339
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/155 (50%), Positives = 105/155 (67%), Gaps = 10/155 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + LPH+LFYGPPGTGKT+T+LA A++LY + + VLELNASD+RGI IVR
Sbjct: 36 LQKTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYGPRLYRSRVLELNASDERGISIVRQ 95
Query: 357 QIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
+I FA + S YK+IILDEAD+MTNDAQ+ALRR +E ++ RFC+
Sbjct: 96 KIKNFARLTVSNPSPEDLREYPCPPYKIIILDEADSMTNDAQSALRRTMENYSGVTRFCL 155
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ICNY+++I + SRC++FRF LD +SRL Y
Sbjct: 156 ICNYITRIIDPLASRCSKFRFRSLDGENALSRLRY 190
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 33/186 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD +SRL YV+EQE + + D
Sbjct: 144 MENYSGVTRFCLICNYITRIIDPLASRCSKFRFRSLDGENALSRLRYVVEQEHIPLASDS 203
Query: 61 K-KAIIDLSDGDMRKVLNILQSA---------ATAHADEVN---EDTIFTLLVSRVEKYR 107
I+ +S GD+RK + LQSA ++A E++ +D LV +
Sbjct: 204 VLNDILAVSGGDLRKAITYLQSATRSGDAGGVSSAKIKEISGVVDDASMETLVGAIRAKN 263
Query: 108 PSTLDELVSHQDII--------STIEIPESMLVDLVLK----------MSDIEYRLAAGT 149
P + ++V +D + + ++ + L+D L + + + RL +GT
Sbjct: 264 PKQIAQVV--KDTVLEGWSAQQTAAQLHDVFLLDDALSSQEKNDIARLLFETDKRLNSGT 321
Query: 150 SEKIQL 155
E IQL
Sbjct: 322 DEHIQL 327
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 73/138 (52%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
VEKYRP LD++ S + ++ L+ +++ + L GT + + AL
Sbjct: 15 VEKYRPKKLDDVASQDHAVRVLQ--------KTLQSANLPHMLFYGPPGTGKTSTVLALA 66
Query: 160 AAFNSAR-DKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
R + VLELNASD+RGI IVR +I FA + S YK+IIL
Sbjct: 67 KQLYGPRLYRSRVLELNASDERGISIVRQKIKNFARLTVSNPSPEDLREYPCPPYKIIIL 126
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MTNDAQ+ALRR +
Sbjct: 127 DEADSMTNDAQSALRRTM 144
>gi|50424927|ref|XP_461055.1| DEHA2F16016p [Debaryomyces hansenii CBS767]
gi|49656724|emb|CAG89431.1| DEHA2F16016p [Debaryomyces hansenii CBS767]
Length = 368
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/163 (50%), Positives = 111/163 (68%), Gaps = 11/163 (6%)
Query: 290 SMDLCYKI-NRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD 348
S D KI + ++ LPH+LFYGPPGTGKT+TILA A++LY + + VLELNASD+
Sbjct: 39 SQDHAVKILKKTLESANLPHMLFYGPPGTGKTSTILALAKQLYGPHLYKSRVLELNASDE 98
Query: 349 RGIGIVRDQIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKF 398
RGI IVR +I FA + S YK+IILDEAD+MTNDAQ+ALRR +E +
Sbjct: 99 RGISIVRQKIKNFARLTISNPSKEDLENYPCPPYKIIILDEADSMTNDAQSALRRTMENY 158
Query: 399 TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ RFC+ICNY+++I + SRC++FRF L++S ++RL Y
Sbjct: 159 SGVTRFCLICNYITRIIDPLASRCSKFRFRLLNNSNALNRLKY 201
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNV-TPD 59
+E ++ RFC+ICNY+++I + SRC++FRF L++S ++RL Y++ QE++ + D
Sbjct: 155 MENYSGVTRFCLICNYITRIIDPLASRCSKFRFRLLNNSNALNRLKYIVGQEEIALDNED 214
Query: 60 GKKAIIDLSDGDMRKVLNILQSAATAHA 87
+ ++++S+GD+RK + LQSAA HA
Sbjct: 215 VLEEVLNISNGDLRKAITYLQSAARLHA 242
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 73/138 (52%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LD++ S + ++ L+ +++ + L G + S ++A
Sbjct: 26 VEKYRPKNLDDVASQDHAVK--------ILKKTLESANLPHMLFYGPPGTGKTSTILALA 77
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR +I FA + S YK+IIL
Sbjct: 78 KQLYGPHLYKSRVLELNASDERGISIVRQKIKNFARLTISNPSKEDLENYPCPPYKIIIL 137
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MTNDAQ+ALRR +
Sbjct: 138 DEADSMTNDAQSALRRTM 155
>gi|307595017|ref|YP_003901334.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307550218|gb|ADN50283.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 327
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/144 (53%), Positives = 102/144 (70%), Gaps = 1/144 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ + +PHLLF+GPPGTGKTT LA AR+LY A + VLELNASD+RGI ++R
Sbjct: 29 RVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYGDA-WRENVLELNASDERGIAMIR 87
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T K+ ++LIILDEAD MT DAQ ALRRI+E +TT+VRF ++ NY S I
Sbjct: 88 EKVKEFAKTMPTVKAPFRLIILDEADNMTPDAQQALRRIMEMYTTSVRFILLANYPSGII 147
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC+ FRF PL ++ RL
Sbjct: 148 EPIQSRCSLFRFSPLPKDAVLGRL 171
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 111/237 (46%), Gaps = 65/237 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
VEKYRPS +D+++ + + ++ ML + +I + L GT + A+
Sbjct: 9 VEKYRPSRIDDIIDQDHVKARVK---EMLAN-----GNIPHLLFFGPPGTGKTTMALAIA 60
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
+ VLELNASD+RGI ++R+++ +FA T K+ ++LIILDEAD MT DAQ
Sbjct: 61 RELYGDAWRENVLELNASDERGIAMIREKVKEFAKTMPTVKAPFRLIILDEADNMTPDAQ 120
Query: 220 NALRR-----------------------------------KLP----------------- 227
ALRR LP
Sbjct: 121 QALRRIMEMYTTSVRFILLANYPSGIIEPIQSRCSLFRFSPLPKDAVLGRLREIASKEGV 180
Query: 228 -VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
VT D +AI D+S GDMRK +N LQ+AA+ V+E+ VY ++G + T++ I+
Sbjct: 181 KVTDDALEAIWDVSQGDMRKAINTLQAAASL-GGVVDEEVVYKALGKVSPTKVRTIV 236
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 40/190 (21%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +TT+VRF ++ NY S I IQSRC+ FRF PL ++ RL + +E V VT D
Sbjct: 127 MEMYTTSVRFILLANYPSGIIEPIQSRCSLFRFSPLPKDAVLGRLREIASKEGVKVTDDA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVS---- 116
+AI D+S GDMRK +N LQ+AA+ V+E+ ++ L K P+ + +V+
Sbjct: 187 LEAIWDVSQGDMRKAINTLQAAASL-GGVVDEEVVYKAL----GKVSPTKVRTIVTEAVV 241
Query: 117 ----------------------------HQDIIST---IEIPESMLVDLVLKMSDIEYRL 145
H++++S +++PE + V +S+ YRL
Sbjct: 242 GDFGKAVREVMSLIRDEGADPLDIIKIIHREVVSAASQLKVPEELKPKAVYIVSEHHYRL 301
Query: 146 AAGTSEKIQL 155
G+S ++Q+
Sbjct: 302 LRGSSGELQV 311
>gi|222623763|gb|EEE57895.1| hypothetical protein OsJ_08571 [Oryza sativa Japonica Group]
Length = 391
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 111/349 (31%), Positives = 158/349 (45%), Gaps = 129/349 (36%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+R +EN LPHLL YGPPGTGK R+ + L S +RGI
Sbjct: 57 DIVDTIDRLTNENRLPHLLLYGPPGTGKH-------RQYW----------PLQGSYERGI 99
Query: 352 GIVRDQIFQFASTKTMH------------------------------------------- 368
+VR QI FAS +++
Sbjct: 100 DVVRQQIQDFASARSLSFGAKQSVKMVLLDEADAMTKDAQFALRRATSSNLPHLTVIEKH 159
Query: 369 ------KSSYKLIILDEADAMTNDAQNALRR----------IIEKFTTNVRFCIICNYLS 412
K S K+++LDEADAMT DAQ ALRR +IEK T + RF +ICN+++
Sbjct: 160 TRSTRAKQSVKMVLLDEADAMTKDAQFALRRATSSNLPHLTVIEKHTRSTRFALICNHVN 219
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSR---------LDYDD-------------------- 443
KI PA+QSRCTRFRF PLD + + R LD DD
Sbjct: 220 KIIPALQSRCTRFRFAPLDGTHVRERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNI 279
Query: 444 ---ISFF------------NIIIWYIK---------IQEIKIEKGLALTDILTEISLLVH 479
+S + I W + I ++K+ KGLAL DI+ E+++ V
Sbjct: 280 LQVMSVYLCTGNPMPKDIEQIAYWLLNESFSTSFKCISDMKMRKGLALVDIIREVTMFVF 339
Query: 480 RLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
++++P + + L+ ++DIEYRL+ ++K+QL ALI+ F AR + A
Sbjct: 340 KIQMPSDVRIKLINDLADIEYRLSFACNDKLQLGALISTFTGARTAMVA 388
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 109/182 (59%), Gaps = 16/182 (8%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK T + RF +ICN+++KI PA+QSRCTRFRF PLD + + RL ++I+ E ++V G
Sbjct: 202 IEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHIIQSEGLDVDDGG 261
Query: 61 KKAIIDLSDGDMRKVLNILQ--SAATAHADEVNEDT---IFTLL----------VSRVEK 105
A++ LS+GDMRK LNILQ S + + +D + LL +S ++
Sbjct: 262 LTALVRLSNGDMRKALNILQVMSVYLCTGNPMPKDIEQIAYWLLNESFSTSFKCISDMKM 321
Query: 106 YRPSTLDELVSHQDI-ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNS 164
+ L +++ + + I++P + + L+ ++DIEYRL+ ++K+QL ALI+ F
Sbjct: 322 RKGLALVDIIREVTMFVFKIQMPSDVRIKLINDLADIEYRLSFACNDKLQLGALISTFTG 381
Query: 165 AR 166
AR
Sbjct: 382 AR 383
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 67/127 (52%), Gaps = 28/127 (22%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +L ++ +H+DI+ TI+ E+ L L+L GT + Q
Sbjct: 41 VEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGP-------PGTGKHRQY----- 88
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH---KSSYKLIILDEADAMTND 217
L S +RGI +VR QI FAS +++ K S K+++LDEADAMT D
Sbjct: 89 -----------WPLQGSYERGIDVVRQQIQDFASARSLSFGAKQSVKMVLLDEADAMTKD 137
Query: 218 AQNALRR 224
AQ ALRR
Sbjct: 138 AQFALRR 144
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Query: 226 LPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
L V G A++ LS+GDMRK LNILQ +VY G P +I I W
Sbjct: 255 LDVDDGGLTALVRLSNGDMRKALNILQVM-----------SVYLCTGNPMPKDIEQIAYW 303
Query: 286 LLNESMDLCYK 296
LLNES +K
Sbjct: 304 LLNESFSTSFK 314
>gi|428170599|gb|EKX39523.1| replication factor C, subunit RFC4 [Guillardia theta CCMP2712]
Length = 324
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/147 (53%), Positives = 102/147 (69%), Gaps = 7/147 (4%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
++ LPHLLFYGPPGTGKT+TILA A+ LY + + VLELNASD+RGI +VR++I
Sbjct: 30 VESGNLPHLLFYGPPGTGKTSTILALAKDLYGPELYKSRVLELNASDERGIDVVRNKIKH 89
Query: 361 FASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
FAS S +KL+ILDEAD MT DAQ+ALRR +E T RFCIICNY+S+
Sbjct: 90 FASLAVSSSKSSSYPCPPFKLVILDEADCMTTDAQSALRRTMETCTRVTRFCIICNYVSR 149
Query: 414 IPPAIQSRCTRFRFGPLDSSLIMSRLD 440
I I SRC +FRF P+ + +++ RL+
Sbjct: 150 IISPIASRCAKFRFQPVSTEVMLERLN 176
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 26/136 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E T RFCIICNY+S+I I SRC +FRF P+ + +++ RL+ + ++E + D
Sbjct: 131 METCTRVTRFCIICNYVSRIISPIASRCAKFRFQPVSTEVMLERLNMIADKEGFQLPSDV 190
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDI 120
A++++S GD+R+ + ++Q+ H + + QDI
Sbjct: 191 TDALVNISGGDLRRAITMMQNTYILHGNSMKG-------------------------QDI 225
Query: 121 I-STIEIPESMLVDLV 135
I + IP+S+++DLV
Sbjct: 226 IENAATIPDSVILDLV 241
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 19/139 (13%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
+V VE++RPS++ ++ + +++T+ ++ ++ + L G + S +
Sbjct: 1 MVPWVEQHRPSSIAQVAHQRHVVATLS--------SAVESGNLPHLLFYGPPGTGKTSTI 52
Query: 159 IAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLII 207
+A + K VLELNASD+RGI +VR++I FAS S +KL+I
Sbjct: 53 LALAKDLYGPELYKSRVLELNASDERGIDVVRNKIKHFASLAVSSSKSSSYPCPPFKLVI 112
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEAD MT DAQ+ALRR +
Sbjct: 113 LDEADCMTTDAQSALRRTM 131
>gi|58270226|ref|XP_572269.1| activator 1 41 kda subunit [Cryptococcus neoformans var. neoformans
JEC21]
gi|134117646|ref|XP_772457.1| hypothetical protein CNBL0720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255071|gb|EAL17810.1| hypothetical protein CNBL0720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228527|gb|AAW44962.1| activator 1 41 kda subunit, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 363
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 106/156 (67%), Gaps = 12/156 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + LPH+LFYGPPGTGKT+TILA AR+L+ F A VLELNASD+RGI +VR+
Sbjct: 42 LRKALASTNLPHMLFYGPPGTGKTSTILALARQLFGPDLFRARVLELNASDERGISVVRE 101
Query: 357 QIFQFASTKTMHKSS------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRF 404
+I FA H + +KLIILDEAD+MT DAQ+ALRRI+E ++ RF
Sbjct: 102 KIKSFARETPRHAPAVSSDGKEYPCPPFKLIILDEADSMTQDAQSALRRIMETYSKITRF 161
Query: 405 CIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
C++CNY+++I + SRC++FRF PL+ +R++
Sbjct: 162 CLVCNYVTRIIEPLASRCSKFRFKPLEQGSTRARME 197
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 24/153 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF PL+ +R++ + E E V P
Sbjct: 152 METYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLEQGSTRARMEMIAENEGVQTDPGV 211
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDI 120
I++L+ GD+RK + LQ+A H S +E P + L H+
Sbjct: 212 ISLILELAGGDLRKAITYLQTAQRLH--------------SSIEP--PMPVSALSIHE-- 253
Query: 121 ISTIEIPESMLVDLVLKM-----SDIEYRLAAG 148
IS + +PE ++ DL+ M + I++ LA G
Sbjct: 254 ISGV-VPEDLITDLLAAMGVDRQTGIDHSLARG 285
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 24/138 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T+D++ S + ++ + L +++ + L G + S ++A
Sbjct: 21 VEKYRPKTIDDVSSQDNTVAVLR--------KALASTNLPHMLFYGPPGTGKTSTILALA 72
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------------YKLI 206
F + VLELNASD+RGI +VR++I FA H + +KLI
Sbjct: 73 RQLFGPDLFRARVLELNASDERGISVVREKIKSFARETPRHAPAVSSDGKEYPCPPFKLI 132
Query: 207 ILDEADAMTNDAQNALRR 224
ILDEAD+MT DAQ+ALRR
Sbjct: 133 ILDEADSMTQDAQSALRR 150
>gi|393220481|gb|EJD05967.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 370
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 105/156 (67%), Gaps = 11/156 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + LPH+LFYGPPGTGKT+TILA +R+L+ F VLELNASD+RGI IVR+
Sbjct: 46 LQKTLTSTNLPHMLFYGPPGTGKTSTILALSRQLFGPDNFKNRVLELNASDERGITIVRE 105
Query: 357 QIFQFAST-----------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
+I FA KT YK+IILDEAD+MT+DAQ+ALRRI+E + RFC
Sbjct: 106 KIKNFARQTPRAQAVASDGKTYPCPPYKIIILDEADSMTHDAQSALRRIMETYARITRFC 165
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
++CNY+++I + SRC++FRF PLD S RL +
Sbjct: 166 LVCNYVTRIIEPLASRCSKFRFRPLDDSATKLRLQH 201
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 98/221 (44%), Gaps = 76/221 (34%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T+D++ S + I++ ++ L +++ + L G + S ++A
Sbjct: 25 VEKYRPKTIDDVSSQEHIVAVLQ--------KTLTSTNLPHMLFYGPPGTGKTSTILALS 76
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST-----------KTMHKSSYKLII 207
F K VLELNASD+RGI IVR++I FA KT YK+II
Sbjct: 77 RQLFGPDNFKNRVLELNASDERGITIVREKIKNFARQTPRAQAVASDGKTYPCPPYKIII 136
Query: 208 LDEADAMTNDAQNALRR------------------------------------------- 224
LDEAD+MT+DAQ+ALRR
Sbjct: 137 LDEADSMTHDAQSALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFRPLDDSATK 196
Query: 225 ----------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAA 255
++PV P+ +I++S GD+R+ + LQSA+
Sbjct: 197 LRLQHIADAERVPVIPEVVSTLINVSGGDLRRSITYLQSAS 237
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 55/83 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RFC++CNY+++I + SRC++FRF PLD S RL ++ + E+V V P+
Sbjct: 155 METYARITRFCLVCNYVTRIIEPLASRCSKFRFRPLDDSATKLRLQHIADAERVPVIPEV 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+I++S GD+R+ + LQSA+
Sbjct: 215 VSTLINVSGGDLRRSITYLQSAS 237
>gi|254568858|ref|XP_002491539.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|238031336|emb|CAY69259.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|328351952|emb|CCA38351.1| Replication factor C subunit 2 [Komagataella pastoris CBS 7435]
Length = 324
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/138 (56%), Positives = 100/138 (72%), Gaps = 10/138 (7%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
+PHLLFYGPPGTGKT+TILA AR+L+ + VLELNASD+RGI IVRD++ FA
Sbjct: 36 MPHLLFYGPPGTGKTSTILAMARELFGPQLMKSRVLELNASDERGISIVRDKVKNFARLS 95
Query: 366 TMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+ + YKLIILDEAD+MT DAQ+ALRRI+E ++ RFCIICNY+++I
Sbjct: 96 VTNPTPEDKENYPCPPYKLIILDEADSMTFDAQSALRRIMENYSHITRFCIICNYITRII 155
Query: 416 PAIQSRCTRFRFGPLDSS 433
I SRC++FRF PL+S+
Sbjct: 156 DPITSRCSKFRFSPLNSA 173
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 114/262 (43%), Gaps = 79/262 (30%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LDE+ + ++I + LK +++ + L G + S ++A
Sbjct: 6 VEKYRPKKLDEVSAQSNVIRVLSNQ--------LKSANMPHLLFYGPPGTGKTSTILAMA 57
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
F K VLELNASD+RGI IVRD++ FA + + YKLIIL
Sbjct: 58 RELFGPQLMKSRVLELNASDERGISIVRDKVKNFARLSVTNPTPEDKENYPCPPYKLIIL 117
Query: 209 DEADAMTNDAQNALRRKL---------------------PVTP----------------- 230
DEAD+MT DAQ+ALRR + P+T
Sbjct: 118 DEADSMTFDAQSALRRIMENYSHITRFCIICNYITRIIDPITSRCSKFRFSPLNSANSLA 177
Query: 231 ---------------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPT 275
D I+D+S+GD+RK +N LQ T H ED++ N G
Sbjct: 178 TLKMISQSEELDIDDDSLTQILDISNGDLRKSINFLQ---TGHK-LFGEDSIENIAGLIP 233
Query: 276 KTEITNILRWLLNESMDLCYKI 297
+ + +++ L +++++ Y+
Sbjct: 234 QNLVQSLIETLQSKNLNKIYEF 255
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 61/93 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFCIICNY+++I I SRC++FRF PL+S+ ++ L + + E++++ D
Sbjct: 135 MENYSHITRFCIICNYITRIIDPITSRCSKFRFSPLNSANSLATLKMISQSEELDIDDDS 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNED 93
I+D+S+GD+RK +N LQ+ ++ E+
Sbjct: 195 LTQILDISNGDLRKSINFLQTGHKLFGEDSIEN 227
>gi|320169797|gb|EFW46696.1| replication factor C subunit 4 [Capsaspora owczarzaki ATCC 30864]
Length = 347
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 107/153 (69%), Gaps = 16/153 (10%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + N+ PHLLFYGPPGTGKT+TILA AR+++ +LELNASD+RGI +VR+
Sbjct: 47 LKKSLTSNDFPHLLFYGPPGTGKTSTILAIARQMFGPELMKTRILELNASDERGISVVRE 106
Query: 357 QIFQFASTKTMHKS----------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ KT+H+S +K+IILDEAD+MT DAQ+ALRR++E ++ RFC+
Sbjct: 107 KV------KTLHQSLRLKWGYPCPPFKIIILDEADSMTADAQSALRRMMETYSKTTRFCL 160
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
ICNY+S+I + SRC +FRF PLD+ ++ +L
Sbjct: 161 ICNYVSRIIEPLASRCAKFRFKPLDAGILTEKL 193
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 28/138 (20%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
VEKYRP T+DE+ ++++ ++ L +D + L G + S ++A
Sbjct: 26 VEKYRPRTVDEVAFQDEVVAVLKKS--------LTSNDFPHLLFYGPPGTGKTSTILAIA 77
Query: 161 --AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS----------SYKLIIL 208
F K +LELNASD+RGI +VR+++ KT+H+S +K+IIL
Sbjct: 78 RQMFGPELMKTRILELNASDERGISVVREKV------KTLHQSLRLKWGYPCPPFKIIIL 131
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 132 DEADSMTADAQSALRRMM 149
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+S+I + SRC +FRF PLD+ ++ +L + ++E + +
Sbjct: 149 METYSKTTRFCLICNYVSRIIEPLASRCAKFRFKPLDAGILTEKLTAIGDKEGLQIDASA 208
Query: 61 KKAIIDLSDGDMRKVLNILQ 80
+ S GDMR+ + ++Q
Sbjct: 209 INQLTAASGGDMRRAITLMQ 228
>gi|294920987|ref|XP_002778643.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239887323|gb|EER10438.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 277
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/149 (53%), Positives = 102/149 (68%), Gaps = 8/149 (5%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
+ LPHLLFYGPPG GKT+ ILA AR+L+ + VLELNASD+RGI ++RD++ +
Sbjct: 51 VGTGNLPHLLFYGPPGNGKTSAILALARELFGPELWRDRVLELNASDERGIDVIRDKVKK 110
Query: 361 FA--STKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
FA S + + S +K+I+LDEAD+MT DAQ ALRRIIE +T RFCIICNY+S
Sbjct: 111 FAQISVRAVAPGSGKSAPPFKIIVLDEADSMTKDAQAALRRIIENYTQVTRFCIICNYVS 170
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+I +QSRC +FRF PL RL+Y
Sbjct: 171 RIIEPLQSRCAKFRFEPLSDESQRGRLEY 199
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 54/89 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE +T RFCIICNY+S+I +QSRC +FRF PL RL+Y+ E V +
Sbjct: 153 IENYTQVTRFCIICNYVSRIIEPLQSRCAKFRFEPLSDESQRGRLEYIANCEGVKMANGA 212
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE 89
+A++ S+GD+R +N LQ ++ +D+
Sbjct: 213 MEALLGTSNGDLRSAINTLQMVSSCLSDD 241
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 76/137 (55%), Gaps = 20/137 (14%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP+ ++EL +++ ++ + ++ + L G + SA++
Sbjct: 23 VPWVEKYRPARVEELAHQPEVVGALK--------EAVGTGNLPHLLFYGPPGNGKTSAIL 74
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFA--STKTMHKSS------YKLII 207
A F + VLELNASD+RGI ++RD++ +FA S + + S +K+I+
Sbjct: 75 ALARELFGPELWRDRVLELNASDERGIDVIRDKVKKFAQISVRAVAPGSGKSAPPFKIIV 134
Query: 208 LDEADAMTNDAQNALRR 224
LDEAD+MT DAQ ALRR
Sbjct: 135 LDEADSMTKDAQAALRR 151
>gi|405124075|gb|AFR98837.1| activator 1 41 kda subunit [Cryptococcus neoformans var. grubii
H99]
Length = 363
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 105/156 (67%), Gaps = 12/156 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + LPH+LFYGPPGTGKT+TILA AR+L+ F A VLELNASD+RGI +VR+
Sbjct: 42 LRKALASTNLPHMLFYGPPGTGKTSTILALARQLFGPDLFRARVLELNASDERGISVVRE 101
Query: 357 QIFQFASTKTMHKSS------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRF 404
+I FA H +KLIILDEAD+MT DAQ+ALRRI+E ++ RF
Sbjct: 102 KIKSFARETPRHAPGISSDGKEYPCPPFKLIILDEADSMTQDAQSALRRIMETYSKITRF 161
Query: 405 CIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
C++CNY+++I + SRC++FRF PL+ +R++
Sbjct: 162 CLVCNYVTRIIEPLASRCSKFRFKPLEQGSTRARME 197
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 19/139 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF PL+ +R++ + E E V P
Sbjct: 152 METYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLEQGSTRARMEMIAENEGVQTDPGV 211
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDI 120
I++L+ GD+RK + LQ+A H S +E P+ + L H+
Sbjct: 212 ISLILELAGGDLRKAITYLQTAQRLH--------------SSIEP--PTPVSALSIHE-- 253
Query: 121 ISTIEIPESMLVDLVLKMS 139
IS + +PE ++ DL+ M
Sbjct: 254 ISGV-VPEDLITDLLAAMG 271
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 24/138 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T+D++ S + ++ + L +++ + L G + S ++A
Sbjct: 21 VEKYRPKTIDDVSSQDNTVAVLR--------KALASTNLPHMLFYGPPGTGKTSTILALA 72
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------------YKLI 206
F + VLELNASD+RGI +VR++I FA H +KLI
Sbjct: 73 RQLFGPDLFRARVLELNASDERGISVVREKIKSFARETPRHAPGISSDGKEYPCPPFKLI 132
Query: 207 ILDEADAMTNDAQNALRR 224
ILDEAD+MT DAQ+ALRR
Sbjct: 133 ILDEADSMTQDAQSALRR 150
>gi|159476624|ref|XP_001696411.1| DNA replication factor C complex subunit 4 [Chlamydomonas
reinhardtii]
gi|158282636|gb|EDP08388.1| DNA replication factor C complex subunit 4 [Chlamydomonas
reinhardtii]
gi|294845967|gb|ADF43126.1| RFC4p [Chlamydomonas reinhardtii]
Length = 332
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/151 (50%), Positives = 103/151 (68%), Gaps = 6/151 (3%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R ++ LPHLLFYGPPGTGKT+T LA AR+LY + VLELNASD+RGI +VR+
Sbjct: 28 LTRALETANLPHLLFYGPPGTGKTSTALAIARQLYGPELMKSRVLELNASDERGIHVVRE 87
Query: 357 QIFQFASTKTMHK------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
++ FA+T YKL+ILDEAD+MT DAQNALRR +E ++ RF ICNY
Sbjct: 88 KVKAFAATAVGAPVPGYPCPPYKLLILDEADSMTQDAQNALRRTMETYSRVTRFVFICNY 147
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+S+I + SRC +FRF PL +++ R+++
Sbjct: 148 VSRIIEPLASRCAKFRFKPLQPAIMAGRIEH 178
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 57/96 (59%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL +++ R++++ E+E V + P
Sbjct: 132 METYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPAIMAGRIEHICERESVTLGPGA 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF 96
+ +S GD+R+ +N LQSAA V+ T+
Sbjct: 192 LDTLSAVSGGDLRRAINTLQSAARLGGGHVDRATLL 227
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 100/233 (42%), Gaps = 71/233 (30%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
VEKYRP + E+ +++++T+ L+ +++ + L G + S +A
Sbjct: 7 VEKYRPKNVSEVAYQEEVVNTL--------TRALETANLPHLLFYGPPGTGKTSTALAIA 58
Query: 161 --AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK------SSYKLIILDEAD 212
+ K VLELNASD+RGI +VR+++ FA+T YKL+ILDEAD
Sbjct: 59 RQLYGPELMKSRVLELNASDERGIHVVREKVKAFAATAVGAPVPGYPCPPYKLLILDEAD 118
Query: 213 AMTNDAQNALRRKL---------------------------------PVTPD-------- 231
+MT DAQNALRR + P+ P
Sbjct: 119 SMTQDAQNALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPAIMAGRIEH 178
Query: 232 ---------GKKAIIDL---SDGDMRKVLNILQSAATAHADEVNEDTVYNSVG 272
G A+ L S GD+R+ +N LQSAA V+ T+ + G
Sbjct: 179 ICERESVTLGPGALDTLSAVSGGDLRRAINTLQSAARLGGGHVDRATLLDVSG 231
>gi|350591807|ref|XP_003483338.1| PREDICTED: replication factor C subunit 4-like [Sus scrofa]
Length = 364
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 137/245 (55%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSR-LDYDDISFFNI----IIWYIKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + R LD D I I + +K+ E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISDEGIAYLVKVSEGDLRKA 241
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR- 523
+ L + L E+ E M+ D+ AG + ++AA S
Sbjct: 242 ITF---LQSATRLTGGKEVTEKMITDI------------AGVIPTETIDGVLAACQSGSF 286
Query: 524 DKLEA 528
DKLEA
Sbjct: 287 DKLEA 291
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISDEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA EV E I
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKMI 262
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 124/290 (42%), Gaps = 79/290 (27%)
Query: 82 AATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDI 141
AATA + N+ V VEKYRP +DE+ +++++ ++ L+ +D+
Sbjct: 23 AATARSSGENKKA---KPVPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADL 71
Query: 142 EYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKT 197
L G + S ++AA F +L VLELNASD+RGI +VR+++ FA
Sbjct: 72 PNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV 131
Query: 198 MHKSS-------YKLIILDEADAMTNDAQNALRRKL---------------------PVT 229
S +K++ILDEAD+MT+ AQ ALRR + P+T
Sbjct: 132 SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLT 191
Query: 230 P--------------------------------DGKKAIIDLSDGDMRKVLNILQSAAT- 256
+G ++ +S+GD+RK + LQSA
Sbjct: 192 SRCSKFRFKPLSDKIQQQRLLDIADKEHVKISDEGIAYLVKVSEGDLRKAITFLQSATRL 251
Query: 257 AHADEVNEDTVYNSVGY-PTKTEITNILRWLLNESMD-LCYKINRFIDEN 304
EV E + + G PT+T I +L + S D L + IDE
Sbjct: 252 TGGKEVTEKMITDIAGVIPTET-IDGVLAACQSGSFDKLEAVVKDLIDEG 300
>gi|294846008|gb|ADF43166.1| RFC4m [Chlamydomonas reinhardtii]
Length = 332
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/151 (50%), Positives = 103/151 (68%), Gaps = 6/151 (3%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R ++ LPHLLFYGPPGTGKT+T LA AR+LY + VLELNASD+RGI +VR+
Sbjct: 28 LTRALETANLPHLLFYGPPGTGKTSTALAIARQLYGPELMKSRVLELNASDERGIHVVRE 87
Query: 357 QIFQFASTKTMHK------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
++ FA+T YKL+ILDEAD+MT DAQNALRR +E ++ RF ICNY
Sbjct: 88 KVKAFAATAVGAPVPGYPCPPYKLLILDEADSMTQDAQNALRRTMETYSRVTRFVFICNY 147
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+S+I + SRC +FRF PL +++ R+++
Sbjct: 148 VSRIIEPLASRCAKFRFKPLQPAIMAGRIEH 178
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 58/96 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL +++ R++++ E+E V + P
Sbjct: 132 METYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPAIMAGRIEHICERESVTLGPGA 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF 96
+ +S GD+R+ +N LQSAA A V+ T+
Sbjct: 192 LDTLSAVSGGDLRRAINTLQSAARLGAGHVDRATLL 227
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 101/233 (43%), Gaps = 71/233 (30%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
VEKYRP + E+ +++++T+ L+ +++ + L G + S +A
Sbjct: 7 VEKYRPKNVSEVAYQEEVVNTL--------TRALETANLPHLLFYGPPGTGKTSTALAIA 58
Query: 161 --AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK------SSYKLIILDEAD 212
+ K VLELNASD+RGI +VR+++ FA+T YKL+ILDEAD
Sbjct: 59 RQLYGPELMKSRVLELNASDERGIHVVREKVKAFAATAVGAPVPGYPCPPYKLLILDEAD 118
Query: 213 AMTNDAQNALRRKL---------------------------------PVTPD-------- 231
+MT DAQNALRR + P+ P
Sbjct: 119 SMTQDAQNALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPAIMAGRIEH 178
Query: 232 ---------GKKAIIDL---SDGDMRKVLNILQSAATAHADEVNEDTVYNSVG 272
G A+ L S GD+R+ +N LQSAA A V+ T+ + G
Sbjct: 179 ICERESVTLGPGALDTLSAVSGGDLRRAINTLQSAARLGAGHVDRATLLDVSG 231
>gi|323507744|emb|CBQ67615.1| probable RFC2-DNA replication factor C, 41 KD subunit [Sporisorium
reilianum SRZ2]
Length = 385
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/143 (52%), Positives = 103/143 (72%), Gaps = 6/143 (4%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS 363
N LPH+LFYGPPGTGKT+TILA AR+L+ VLELNASD+RGI +VR++I FA
Sbjct: 60 NNLPHMLFYGPPGTGKTSTILALARQLFGPELMKTRVLELNASDERGISVVREKIKNFAK 119
Query: 364 TKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
+ +K+IILDEAD+MT DAQ+ALRRI+E+++ RFC++CNY+++I
Sbjct: 120 LAVTNPKEGFPCPPFKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRIIEP 179
Query: 418 IQSRCTRFRFGPLDSSLIMSRLD 440
+ SRC++FRF LD+S +RL+
Sbjct: 180 LASRCSKFRFRSLDTSSTKTRLE 202
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 18/132 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T+D++ + + ++ ++ L +++ + L G + S ++A
Sbjct: 32 VEKYRPKTIDDVAAQEHTVAVLK--------KTLMSNNLPHMLFYGPPGTGKTSTILALA 83
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------YKLIILDEAD 212
F K VLELNASD+RGI +VR++I FA + +K+IILDEAD
Sbjct: 84 RQLFGPELMKTRVLELNASDERGISVVREKIKNFAKLAVTNPKEGFPCPPFKIIILDEAD 143
Query: 213 AMTNDAQNALRR 224
+MT DAQ+ALRR
Sbjct: 144 SMTQDAQSALRR 155
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF LD+S +RL+ + E V+
Sbjct: 157 MEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFRSLDTSSTKTRLEMIASAESVSFQDST 216
Query: 61 K-KAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT 97
+I SDGD+R+ + LQSA+ H+ +E + T
Sbjct: 217 VLDTLISTSDGDLRRAITYLQSASRLHSIAGDEKSSVT 254
>gi|296421403|ref|XP_002840254.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636469|emb|CAZ84445.1| unnamed protein product [Tuber melanosporum]
Length = 372
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 120/188 (63%), Gaps = 23/188 (12%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+T+LA A++LY + VLELNASD+RGI IVR+
Sbjct: 58 LKRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPELMKSRVLELNASDERGISIVRE 117
Query: 357 QIFQFA----STKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA ST + +SS YK+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 118 KVKNFARITVSTASSTQSSNYPCPPYKIIILDEADSMTQDAQSALRRTMETYSKITRFCL 177
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSS---------LIMSRLDYDDISFFNIIIWYIKIQ 457
ICNY+++I + SRC++FRF PLD M ++Y+D +I IK+
Sbjct: 178 ICNYVTRIIDPLASRCSKFRFKPLDEENAKLRLEEIAKMENVEYED----GVIDALIKVS 233
Query: 458 EIKIEKGL 465
E + K +
Sbjct: 234 EGDLRKAI 241
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 22/141 (15%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP L+++ + IS ++ L+ S++ + L G + S ++
Sbjct: 34 VPWVEKYRPKNLNDVSAQDHTISVLK--------RTLQSSNLPHMLFYGPPGTGKTSTVL 85
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFA----STKTMHKSS------YKL 205
A + K VLELNASD+RGI IVR+++ FA ST + +SS YK+
Sbjct: 86 ALAKELYGPELMKSRVLELNASDERGISIVREKVKNFARITVSTASSTQSSNYPCPPYKI 145
Query: 206 IILDEADAMTNDAQNALRRKL 226
IILDEAD+MT DAQ+ALRR +
Sbjct: 146 IILDEADSMTQDAQSALRRTM 166
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF PLD RL+ + + E V
Sbjct: 166 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKPLDEENAKLRLEEIAKMENVEYEDGV 225
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH 86
A+I +S+GD+RK + LQSAA H
Sbjct: 226 IDALIKVSEGDLRKAITYLQSAARLH 251
>gi|50304409|ref|XP_452154.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641286|emb|CAH02547.1| KLLA0B13992p [Kluyveromyces lactis]
Length = 352
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 108/156 (69%), Gaps = 12/156 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + LPH+LFYGPPGTGKT+TILA ++LY N+ VLELNASD+RGI IVR+
Sbjct: 46 LKRTLQTANLPHMLFYGPPGTGKTSTILALTKELYGPHLSNSRVLELNASDERGISIVRE 105
Query: 357 QIFQFASTKTMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
++ FA T+ K S YK+IILDEAD+MT DAQ+ALRR +E ++ RFC
Sbjct: 106 KVKNFARL-TVSKPSESDLANYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFC 164
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ICNY+++I + SRC++FRF LDSS +SRL +
Sbjct: 165 LICNYVTRIIDPLASRCSKFRFKALDSSNALSRLQF 200
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 56/83 (67%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LDSS +SRL ++ +E +
Sbjct: 154 METYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSSNALSRLQFIANEESLKYEDGV 213
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ I+D+S GD+RK + +LQSAA
Sbjct: 214 LERILDISQGDLRKAITLLQSAA 236
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 76/139 (54%), Gaps = 24/139 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LD+ V+ QD T+ + L+ +++ + L G + S ++A
Sbjct: 25 VEKYRPRKLDD-VAAQDHAVTV-------LKRTLQTANLPHMLFYGPPGTGKTSTILALT 76
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----------YKLII 207
+ VLELNASD+RGI IVR+++ FA T+ K S YK+II
Sbjct: 77 KELYGPHLSNSRVLELNASDERGISIVREKVKNFARL-TVSKPSESDLANYPCPPYKIII 135
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEAD+MT DAQ+ALRR +
Sbjct: 136 LDEADSMTADAQSALRRTM 154
>gi|402225443|gb|EJU05504.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 370
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 107/155 (69%), Gaps = 10/155 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + LPH+LFYGPPGTGKT+TILA AR+L+ F + VLELNASD+RGI +VR+
Sbjct: 50 LKKTLGSANLPHMLFYGPPGTGKTSTILALARQLFGPELFRSRVLELNASDERGITVVRE 109
Query: 357 QIFQFA----------STKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
+I FA ++K YK+IILDEAD+MT DAQ ALRR++E + RFC+
Sbjct: 110 KIKNFARQTPRAADDEASKGYPCPPYKIIILDEADSMTQDAQAALRRVMETYAKITRFCL 169
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+CNY+++I + SRC++FRF LD+S +RL+Y
Sbjct: 170 VCNYVTRIIEPLASRCSKFRFHTLDASSNRARLEY 204
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 54/82 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RFC++CNY+++I + SRC++FRF LD+S +RL+Y+ E V+VTP
Sbjct: 158 METYAKITRFCLVCNYVTRIIEPLASRCSKFRFHTLDASSNRARLEYIATAEHVSVTPAV 217
Query: 61 KKAIIDLSDGDMRKVLNILQSA 82
+I S+GD+R+ + LQSA
Sbjct: 218 ISTLISTSEGDLRRSITYLQSA 239
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 22/136 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
+EKYRP T++E+ + + + ++ L +++ + L G + S ++A
Sbjct: 29 IEKYRPKTMEEISAQEHTVQVLK--------KTLGSANLPHMLFYGPPGTGKTSTILALA 80
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA----------STKTMHKSSYKLIIL 208
F + VLELNASD+RGI +VR++I FA ++K YK+IIL
Sbjct: 81 RQLFGPELFRSRVLELNASDERGITVVREKIKNFARQTPRAADDEASKGYPCPPYKIIIL 140
Query: 209 DEADAMTNDAQNALRR 224
DEAD+MT DAQ ALRR
Sbjct: 141 DEADSMTQDAQAALRR 156
>gi|352682669|ref|YP_004893193.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275468|emb|CCC82115.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 321
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 101/146 (69%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ FI +PHLLFYGPPGTGKTTT L AR+LY + ++ LELNASD+RGI ++R
Sbjct: 27 RLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYGE-RWRENTLELNASDERGINVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + +KL++LDEAD MT+DAQ ALRRI+E + RF ++ NY+S I
Sbjct: 86 ERVKEFARTAPAGGAPFKLVVLDEADNMTSDAQQALRRIMEMYAATTRFVLLANYVSGII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSRC FRF PL +++RL Y
Sbjct: 146 EPIQSRCAVFRFSPLPKDAVVARLRY 171
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 108/243 (44%), Gaps = 67/243 (27%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP + E+V ++I ++ L + + M + + GT + L
Sbjct: 8 EKYRPKSFAEIVDLEEI-------KARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARE 60
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
R + LELNASD+RGI ++R+++ +FA T + +KL++LDEAD MT+DAQ A
Sbjct: 61 LYGERWRENTLELNASDERGINVIRERVKEFARTAPAGGAPFKLVVLDEADNMTSDAQQA 120
Query: 222 LRR-----------------------------------------------------KLPV 228
LRR L V
Sbjct: 121 LRRIMEMYAATTRFVLLANYVSGIIEPIQSRCAVFRFSPLPKDAVVARLRYIAEQEGLKV 180
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
T D +AI D + GDMR+ + LQ A++ E++E+ + ++GY + + ILR L+
Sbjct: 181 TQDALEAIFDFTQGDMRRAITALQIASST-TREIDEEAIARALGYVSPS----ILRRLIA 235
Query: 289 ESM 291
E++
Sbjct: 236 EAI 238
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 40/193 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF ++ NY+S I IQSRC FRF PL +++RL Y+ EQE + VT D
Sbjct: 125 MEMYAATTRFVLLANYVSGIIEPIQSRCAVFRFSPLPKDAVVARLRYIAEQEGLKVTQDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKY-RPSTLDELVS--- 116
+AI D + GDMR+ + LQ A++ E++E+ I +R Y PS L L++
Sbjct: 185 LEAIFDFTQGDMRRAITALQIASST-TREIDEEAI-----ARALGYVSPSILRRLIAEAI 238
Query: 117 -----------------------------HQDIISTIEIPESMLVDLVLKMSDIEYRLAA 147
H++++ +++PE + DL ++ Y +
Sbjct: 239 SGDFSKAISQIYGIVADGGVGELELIRQIHREVLR-LDVPEHLKPDLAYEVERAHYAVLR 297
Query: 148 GTSEKIQLSALIA 160
G + +Q+ ++A
Sbjct: 298 GANGLVQIYGILA 310
>gi|57109940|ref|XP_535837.1| PREDICTED: replication factor C subunit 4 [Canis lupus familiaris]
Length = 363
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 140/245 (57%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 61 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 120
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 121 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 180
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL D + + N I Y +K+ E + K
Sbjct: 181 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKVSNEGIAYLVKVSEGDLRKA 240
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR- 523
+ L + L EI E ++ +DI + AGT + + AA S
Sbjct: 241 ITF---LQSATRLTGGKEITEKVI-------TDIAGVIPAGT-----IDGIFAACQSGSF 285
Query: 524 DKLEA 528
DKLEA
Sbjct: 286 DKLEA 290
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V V+ +G
Sbjct: 166 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKVSNEG 225
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA E+ E I
Sbjct: 226 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVI 261
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 22/156 (14%)
Query: 82 AATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDI 141
AATA + N+ T V VEKYRP +DE+ +++++ ++ L+ +D+
Sbjct: 22 AATAGSSGENKKT---KPVPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADL 70
Query: 142 EYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKT 197
L G + S ++AA F +L VLELNASD+RGI +VR+++ FA
Sbjct: 71 PNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV 130
Query: 198 MHKSS-------YKLIILDEADAMTNDAQNALRRKL 226
S +K++ILDEAD+MT+ AQ ALRR +
Sbjct: 131 SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTM 166
>gi|345566715|gb|EGX49657.1| hypothetical protein AOL_s00078g146 [Arthrobotrys oligospora ATCC
24927]
Length = 387
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/153 (52%), Positives = 106/153 (69%), Gaps = 10/153 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A++LY VLELNASD+RGI IVR+
Sbjct: 59 LRRTLQSSNLPHMLFYGPPGTGKTSTILALAKELYGPELMKTRVLELNASDERGISIVRE 118
Query: 357 QIFQFA----STKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA ST T +S YK+IILDEAD+MT+DAQ+ALRR +E ++ RFC+
Sbjct: 119 KVKNFAKIAVSTTTAANASKYPCPPYKIIILDEADSMTHDAQSALRRTMETYSKITRFCL 178
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
ICNY+++I + SRC++FRF PLD RL
Sbjct: 179 ICNYVTRIIDPLASRCSKFRFKPLDEGNTRLRL 211
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 78/141 (55%), Gaps = 22/141 (15%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP TL ++ + +S + L+ S++ + L G + S ++
Sbjct: 35 VPWVEKYRPKTLSDVTAQDHTVSVLR--------RTLQSSNLPHMLFYGPPGTGKTSTIL 86
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFA----STKTMHKSS------YKL 205
A + K VLELNASD+RGI IVR+++ FA ST T +S YK+
Sbjct: 87 ALAKELYGPELMKTRVLELNASDERGISIVREKVKNFAKIAVSTTTAANASKYPCPPYKI 146
Query: 206 IILDEADAMTNDAQNALRRKL 226
IILDEAD+MT+DAQ+ALRR +
Sbjct: 147 IILDEADSMTHDAQSALRRTM 167
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 51/87 (58%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF PLD RL + E E V
Sbjct: 167 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKPLDEGNTRLRLSSIAEAEGVKYQEGV 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA 87
+I ++DGD+RK + LQSAA H
Sbjct: 227 VDTLIKVADGDLRKAITFLQSAAKLHG 253
>gi|365981921|ref|XP_003667794.1| hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
gi|343766560|emb|CCD22551.1| hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
Length = 354
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/147 (53%), Positives = 106/147 (72%), Gaps = 12/147 (8%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPH+LFYGPPGTGKT+TILA A++LY + +LELNASD+RGI IVR+++ FA
Sbjct: 60 LPHMLFYGPPGTGKTSTILALAKELYGPELMKSRILELNASDERGISIVREKVKNFARL- 118
Query: 366 TMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
T+ K S YK+IILDEAD+MT DAQ+ALRR +E ++ RFC+ICNY+++I
Sbjct: 119 TVSKPSKNDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 178
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF PLD++ + RL+Y
Sbjct: 179 IDPLASRCSKFRFKPLDATNSIGRLEY 205
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 31/190 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF PLD++ + RL+YV +E V D
Sbjct: 159 METYSGVTRFCLICNYVTRIIDPLASRCSKFRFKPLDATNSIGRLEYVAREESVQYDDDV 218
Query: 61 KKAIIDLSDGDMRKVLNILQSAA------------TAHADE---VNEDTIFTLLVSRVEK 105
K I+D+S+GD+R+ + +LQSA+ +A E V D +F +++ +V K
Sbjct: 219 MKCILDISEGDLRRAITLLQSASKRILYTGEKQVTSASVKELAGVIPDDVFQVVIDKVSK 278
Query: 106 YRPSTLDELVS----------------HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGT 149
+ E V+ H I+ E + L + +++ +LA GT
Sbjct: 279 NDVNETIEYVNEFIKSGWSAASVINQLHDYYITNDEFNSDFKNKVSLILFEMDSKLANGT 338
Query: 150 SEKIQLSALI 159
+E IQL L+
Sbjct: 339 NEHIQLLNLL 348
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 24/139 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LD++ + +S ++ L+ +++ + L G + S ++A
Sbjct: 30 VEKYRPKQLDDITAQGHAVSVLK--------KTLQSANLPHMLFYGPPGTGKTSTILALA 81
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----------YKLII 207
+ K +LELNASD+RGI IVR+++ FA T+ K S YK+II
Sbjct: 82 KELYGPELMKSRILELNASDERGISIVREKVKNFARL-TVSKPSKNDLENYPCPPYKIII 140
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEAD+MT DAQ+ALRR +
Sbjct: 141 LDEADSMTADAQSALRRTM 159
>gi|126458633|ref|YP_001054911.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|158513488|sp|A3MS28.1|RFCS_PYRCJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126248354|gb|ABO07445.1| Replication factor C [Pyrobaculum calidifontis JCM 11548]
Length = 326
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/144 (52%), Positives = 101/144 (70%), Gaps = 1/144 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ LPHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGIG++R
Sbjct: 27 RLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGIGVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S+I
Sbjct: 86 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
I SRC FRF P+ L+ RL
Sbjct: 146 DPIISRCAVFRFSPMPRHLMAERL 169
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 11/137 (8%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALIA 160
EKYRP + +E+V +++ ++ L + V K ++ + L GT + L
Sbjct: 8 EKYRPRSFEEVVDLEEV-------KARLREFV-KAGNLPHLLFYGPPGTGKTTMALVLAR 59
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELNASD+RGIG++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ
Sbjct: 60 ELYGEYWRENTLELNASDERGIGVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQ 119
Query: 221 ALRRKLPVTPDGKKAII 237
ALRR + + + I+
Sbjct: 120 ALRRIMEIYAQNTRFIL 136
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 36/202 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S+I I SRC FRF P+ L+ RL + E V + D
Sbjct: 125 MEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLREIARSEGVELKDDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDEL------ 114
I ++S+GDMRK +N+LQ AA V++ + S RPS + EL
Sbjct: 185 IDLIYEISEGDMRKAINLLQVAAA-----VSKVVDANAVASAAAAVRPSDVLELFNLAMG 239
Query: 115 ------------------VSHQDIIST-------IEIPESMLVDLVLKMSDIEYRLAAGT 149
V+ D+I +++ + + ++ +S+++YRL G
Sbjct: 240 GDLAKARDKLRELMYIKGVAGVDLIRVFQRELIRMQLDDDVKAEVAELLSEVDYRLTQGA 299
Query: 150 SEKIQLSALIAAFNSARDKLEV 171
E+IQL + S K+ V
Sbjct: 300 DEEIQLMYFLMKLGSIGKKIRV 321
>gi|126459198|ref|YP_001055476.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|126248919|gb|ABO08010.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
Length = 324
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 101/146 (69%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ LPHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGIG++R
Sbjct: 27 RLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGIGVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S I
Sbjct: 86 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSNII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSR RF PL ++SRL +
Sbjct: 146 EPIQSRVVMIRFNPLPKEAVISRLRF 171
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 112/243 (46%), Gaps = 69/243 (28%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALIA 160
EKYRP + +E+V +++ ++ L + V K ++ + L GT + L
Sbjct: 8 EKYRPRSFEEVVDLEEV-------KARLREFV-KAGNLPHLLFYGPPGTGKTTMALVLAR 59
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELNASD+RGIG++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ
Sbjct: 60 ELYGEYWRENTLELNASDERGIGVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQ 119
Query: 221 ALRR-----------------------------------KLP------------------ 227
ALRR LP
Sbjct: 120 ALRRIMEIYAQNTRFILLANYVSNIIEPIQSRVVMIRFNPLPKEAVISRLRFIAENEGVK 179
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
V+ D +AI + + GDMRK +N LQ AA+ + EV E+ V ++G + +LR +L
Sbjct: 180 VSDDALEAIYEFTQGDMRKAINALQVAASV-SREVTEEEVAKALGMVS----PRLLREVL 234
Query: 288 NES 290
E+
Sbjct: 235 QEA 237
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S I IQSR RF PL ++SRL ++ E E V V+ D
Sbjct: 125 MEIYAQNTRFILLANYVSNIIEPIQSRVVMIRFNPLPKEAVISRLRFIAENEGVKVSDDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
+AI + + GDMRK +N LQ AA+ + EV E+ +
Sbjct: 185 LEAIYEFTQGDMRKAINALQVAASV-SREVTEEEV 218
>gi|71003365|ref|XP_756363.1| hypothetical protein UM00216.1 [Ustilago maydis 521]
gi|46095800|gb|EAK81033.1| hypothetical protein UM00216.1 [Ustilago maydis 521]
Length = 384
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/143 (52%), Positives = 103/143 (72%), Gaps = 6/143 (4%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS 363
N LPH+LFYGPPGTGKT+TILA AR+L+ VLELNASD+RGI +VR++I FA
Sbjct: 60 NNLPHMLFYGPPGTGKTSTILALARQLFGPELMKTRVLELNASDERGITVVREKIKNFAK 119
Query: 364 TKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
+ +K+IILDEAD+MT DAQ+ALRRI+E+++ RFC++CNY+++I
Sbjct: 120 LAVTNPKEGFPCPPFKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRIIEP 179
Query: 418 IQSRCTRFRFGPLDSSLIMSRLD 440
+ SRC++FRF LD+S +RL+
Sbjct: 180 LASRCSKFRFRSLDTSSTKARLE 202
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 12/129 (9%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T+DE+ + + ++ ++ +++L + + + + GT + + AL
Sbjct: 32 VEKYRPKTIDEVAAQEHTVAVLK--KTLLSN---NLPHMLFYGPPGTGKTSTILALARQL 86
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------YKLIILDEADAMT 215
F K VLELNASD+RGI +VR++I FA + +K+IILDEAD+MT
Sbjct: 87 FGPELMKTRVLELNASDERGITVVREKIKNFAKLAVTNPKEGFPCPPFKIIILDEADSMT 146
Query: 216 NDAQNALRR 224
DAQ+ALRR
Sbjct: 147 QDAQSALRR 155
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF LD+S +RL+ + E V G
Sbjct: 157 MEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFRSLDTSSTKARLEMIASAESVAFRDSG 216
Query: 61 K-KAIIDLSDGDMRKVLNILQSAATAHA 87
+I SDGD+R+ + LQSA+ H+
Sbjct: 217 VLDTLISTSDGDLRRAITYLQSASRLHS 244
>gi|443896109|dbj|GAC73453.1| replication factor C, subunit RFC4 [Pseudozyma antarctica T-34]
Length = 383
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/143 (52%), Positives = 103/143 (72%), Gaps = 6/143 (4%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS 363
N LPH+LFYGPPGTGKT+TILA AR+L+ VLELNASD+RGI +VR++I FA
Sbjct: 60 NNLPHMLFYGPPGTGKTSTILALARQLFGPELMKTRVLELNASDERGITVVREKIKNFAK 119
Query: 364 TKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
+ +K+IILDEAD+MT DAQ+ALRRI+E+++ RFC++CNY+++I
Sbjct: 120 LAVTNPKEGFPCPPFKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRIIEP 179
Query: 418 IQSRCTRFRFGPLDSSLIMSRLD 440
+ SRC++FRF LD+S +RL+
Sbjct: 180 LASRCSKFRFRSLDTSSTKARLE 202
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 73/132 (55%), Gaps = 18/132 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T+DE+ + + ++ ++ L +++ + L G + S ++A
Sbjct: 32 VEKYRPKTIDEVTAQEHTVAVLK--------KTLMSNNLPHMLFYGPPGTGKTSTILALA 83
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------YKLIILDEAD 212
F K VLELNASD+RGI +VR++I FA + +K+IILDEAD
Sbjct: 84 RQLFGPELMKTRVLELNASDERGITVVREKIKNFAKLAVTNPKEGFPCPPFKIIILDEAD 143
Query: 213 AMTNDAQNALRR 224
+MT DAQ+ALRR
Sbjct: 144 SMTQDAQSALRR 155
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF LD+S +RL+ + E V DG
Sbjct: 157 MEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFRSLDTSSTKARLEMIANTEAVTFE-DG 215
Query: 61 K--KAIIDLSDGDMRKVLNILQSAATAHA 87
+ +I SDGD+R+ + LQSA+ H+
Sbjct: 216 EVLDTLIGTSDGDLRRAITYLQSASRLHS 244
>gi|392573304|gb|EIW66444.1| hypothetical protein TREMEDRAFT_74703 [Tremella mesenterica DSM
1558]
Length = 490
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 114/180 (63%), Gaps = 22/180 (12%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + LPH+LFYGPPGTGKT+TILA AR+L+ F + VLELNASD+RGI +VR+
Sbjct: 171 LRKALASTNLPHMLFYGPPGTGKTSTILALARQLFGPDLFRSRVLELNASDERGITVVRE 230
Query: 357 QIFQFASTKTMHKS-----------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
+I FA H S +KLIILDEAD+MT+DAQ+ALRRI+E ++ RFC
Sbjct: 231 KIKTFARETPRHVSLSSDGKTYPCPPFKLIILDEADSMTHDAQSALRRIMETYSRITRFC 290
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGL 465
++CNY+++I + SRC++FRF PL +R++ +K + + IE G+
Sbjct: 291 LVCNYVTRIIEPLASRCSKFRFKPLAQGSSQARMEM-----------IVKAEGVDIEDGV 339
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 23/137 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T+D++ S ++ ++ + L +++ + L G + S ++A
Sbjct: 150 VEKYRPKTIDDVSSQENTVAVLR--------KALASTNLPHMLFYGPPGTGKTSTILALA 201
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS-----------SYKLII 207
F + VLELNASD+RGI +VR++I FA H S +KLII
Sbjct: 202 RQLFGPDLFRSRVLELNASDERGITVVREKIKTFARETPRHVSLSSDGKTYPCPPFKLII 261
Query: 208 LDEADAMTNDAQNALRR 224
LDEAD+MT+DAQ+ALRR
Sbjct: 262 LDEADSMTHDAQSALRR 278
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 60/110 (54%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF PL +R++ +++ E V++
Sbjct: 280 METYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLAQGSSQARMEMIVKAEGVDIEDGV 339
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPST 110
I++L+ GD+RK + LQ+A H I + + + P T
Sbjct: 340 LDRILELAGGDLRKAITFLQTAQRLHGATSPPTPISAMSIHEISGVVPDT 389
>gi|426217726|ref|XP_004003103.1| PREDICTED: replication factor C subunit 4 isoform 1 [Ovis aries]
Length = 364
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 137/245 (55%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL D + + N I Y +K+ E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKA 241
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR- 523
+ L + L E+ E ++ D+ AG + + AA S
Sbjct: 242 ITF---LQSATRLTGGKEVTEKVITDI------------AGVVPAKTIDGVFAACQSGSF 286
Query: 524 DKLEA 528
DKLEA
Sbjct: 287 DKLEA 291
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA EV E I
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVI 262
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 105/244 (43%), Gaps = 74/244 (30%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL---------------------PVTP----------------- 230
DEAD+MT+ AQ ALRR + P+T
Sbjct: 150 DEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQ 209
Query: 231 ---------------DGKKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVG-Y 273
+G ++ +S+GD+RK + LQSA EV E + + G
Sbjct: 210 RLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGVV 269
Query: 274 PTKT 277
P KT
Sbjct: 270 PAKT 273
>gi|15988297|pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988298|pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988299|pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988300|pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988301|pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988302|pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 102/149 (68%), Gaps = 1/149 (0%)
Query: 293 LCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIG 352
+ ++ ++ +PHLLF GPPG GKTT LA AR+L+ + + LELNASD+RGI
Sbjct: 33 IVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGIN 91
Query: 353 IVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
++R+++ +FA TK + +S+K+I LDEADA+T DAQ ALRR +E F++NVRF + CNY S
Sbjct: 92 VIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
KI IQSRC FRF PL I RL Y
Sbjct: 152 KIIEPIQSRCAIFRFRPLRDEDIAKRLRY 180
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 99/188 (52%), Gaps = 26/188 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F++NVRF + CNY SKI IQSRC FRF PL I RL Y+ E E + +T +G
Sbjct: 134 MEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEG 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT----------------AHADEVNEDTIFTL---LVS 101
+AI+ +++GDMR+ +NILQ+AA A +++ E + L +
Sbjct: 194 LQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLALKGNFLK 253
Query: 102 RVEKYRPSTLDELVSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
EK R L + +S +D+ + + I E V L K+ + +RL G +E IQ
Sbjct: 254 AREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGANEIIQ 313
Query: 155 LSALIAAF 162
L AL+A F
Sbjct: 314 LEALLAQF 321
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 70/213 (32%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP LD++V + I+ ++ +K + + L AG + AA
Sbjct: 16 VEKYRPQRLDDIVGQEHIVKRLK--------HYVKTGSMPHLLFAGPP---GVGKTTAAL 64
Query: 163 NSARD------KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
AR+ + LELNASD+RGI ++R+++ +FA TK + +S+K+I LDEADA+T
Sbjct: 65 ALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ 124
Query: 217 DAQNALRRKL---------------------PV--------------------------- 228
DAQ ALRR + P+
Sbjct: 125 DAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAEN 184
Query: 229 -----TPDGKKAIIDLSDGDMRKVLNILQSAAT 256
T +G +AI+ +++GDMR+ +NILQ+AA
Sbjct: 185 EGLELTEEGLQAILYIAEGDMRRAINILQAAAA 217
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
K++EI +++GL+ D+L ++ V L I E V L K+ + +RL G +E IQL A
Sbjct: 257 KLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGANEIIQLEA 316
Query: 515 LIAAF 519
L+A F
Sbjct: 317 LLAQF 321
>gi|330845966|ref|XP_003294831.1| replication factor C subunit [Dictyostelium purpureum]
gi|325074630|gb|EGC28646.1| replication factor C subunit [Dictyostelium purpureum]
Length = 344
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 82/158 (51%), Positives = 104/158 (65%), Gaps = 8/158 (5%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + + + LPHLLFYGPPGTGKT+TILA A +Y VLELNASD+RGI
Sbjct: 30 DVVSALKKSLSTGNLPHLLFYGPPGTGKTSTILAIAMDIYGPELIKQRVLELNASDERGI 89
Query: 352 GIVRDQIFQFAS---TKTMHK-----SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
IVR +I FA KT+ +++KLIILDEAD+MT+DAQ ALRR IE + R
Sbjct: 90 EIVRTKIKNFAGFTVNKTVSNGNNAGATFKLIILDEADSMTSDAQAALRRTIETTSKTTR 149
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
FC++CNY+S+I + SRC +FRF PLDS + RL Y
Sbjct: 150 FCLLCNYISRIIDPLASRCAKFRFKPLDSEATIERLKY 187
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 31/203 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE + RFC++CNY+S+I + SRC +FRF PLDS + RL Y+ QE + T
Sbjct: 141 IETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDSEATIERLKYISIQEGIKCTDSV 200
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT--------LLVSRVEKYRPSTLD 112
+AI +SDGDMRK + LQSA + +++ EDTI+ ++ S ++ + ++
Sbjct: 201 YQAIQTVSDGDMRKAITYLQSAFRFYGNKLTEDTIYNISGTLSPLIITSLIKSCKSNSFK 260
Query: 113 ELVSH-QDIIST---IEIPESMLVDLVL---------------KMSDIEYRLAAGTSEKI 153
+L S Q IIS + S L D VL K+ +++ L G+ E +
Sbjct: 261 DLQSTVQSIISQGYPVSQVVSQLFDFVLSDSKFNDKQKSLISMKIGNVDRNLIDGSEEFL 320
Query: 154 QL----SALIAAFNSARDKLEVL 172
QL S ++ N++ D E++
Sbjct: 321 QLLDLSSYIMKLLNNSNDNDEMI 343
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 112/247 (45%), Gaps = 73/247 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
V KYRP T+D++ D++S ++ L ++ + L G + S ++A
Sbjct: 14 VSKYRPKTMDDVSYQDDVVSALKKS--------LSTGNLPHLLFYGPPGTGKTSTILAIA 65
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS---TKTMHK-----SSYKLIILDE 210
+ K VLELNASD+RGI IVR +I FA KT+ +++KLIILDE
Sbjct: 66 MDIYGPELIKQRVLELNASDERGIEIVRTKIKNFAGFTVNKTVSNGNNAGATFKLIILDE 125
Query: 211 ADAMTNDAQNALRRKLPVT------------------------------PDGKKAIID-- 238
AD+MT+DAQ ALRR + T P +A I+
Sbjct: 126 ADSMTSDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDSEATIERL 185
Query: 239 ---------------------LSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKT 277
+SDGDMRK + LQSA + +++ EDT+YN G +
Sbjct: 186 KYISIQEGIKCTDSVYQAIQTVSDGDMRKAITYLQSAFRFYGNKLTEDTIYNISGTLSPL 245
Query: 278 EITNILR 284
IT++++
Sbjct: 246 IITSLIK 252
>gi|320580296|gb|EFW94519.1| replication factor C subunit 2 [Ogataea parapolymorpha DL-1]
Length = 334
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 105/155 (67%), Gaps = 10/155 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + LPH+LFYGPPGTGKT+TILA A++LY F + VLELNASD+RGI IVRD
Sbjct: 20 LKRNLQTANLPHMLFYGPPGTGKTSTILAMAKELYGPHLFRSRVLELNASDERGISIVRD 79
Query: 357 QIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
+I FA + S YKL+ILDEAD+MT+DAQ+ALRR +E ++ RFC+
Sbjct: 80 KIKNFARLSISNPSKEDLEKYPCPPYKLLILDEADSMTSDAQSALRRTMETYSGITRFCL 139
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ICNY+++I + SRC++FRF LD + RL Y
Sbjct: 140 ICNYITRIIDPLASRCSKFRFKMLDEENSIKRLQY 174
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 7/102 (6%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD + RL Y+ +E V +
Sbjct: 128 METYSGITRFCLICNYITRIIDPLASRCSKFRFKMLDEENSIKRLQYICNEENVTASTPV 187
Query: 61 KKAIIDLSDGDMRKVLNILQS-------AATAHADEVNEDTI 95
K I+ +SDGD+RK +N LQS A AD+V ED I
Sbjct: 188 LKEILRISDGDLRKAINFLQSVHKMLMPAEDEMADDVTEDQI 229
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 81/192 (42%), Gaps = 70/192 (36%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIILDEADAMTN---- 216
VLELNASD+RGI IVRD+I FA + S YKL+ILDEAD+MT+
Sbjct: 63 VLELNASDERGISIVRDKIKNFARLSISNPSKEDLEKYPCPPYKLLILDEADSMTSDAQS 122
Query: 217 -----------------------------------------DAQNALRR--------KLP 227
D +N+++R +
Sbjct: 123 ALRRTMETYSGITRFCLICNYITRIIDPLASRCSKFRFKMLDEENSIKRLQYICNEENVT 182
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQS-------AATAHADEVNEDTVYNSVGYPTKTEIT 280
+ K I+ +SDGD+RK +N LQS A AD+V ED + + GY K ++
Sbjct: 183 ASTPVLKEILRISDGDLRKAINFLQSVHKMLMPAEDEMADDVTEDQIRDVFGYLPKDQLM 242
Query: 281 NILRWLLNESMD 292
++R + MD
Sbjct: 243 ELIRLAEKKDMD 254
>gi|363750506|ref|XP_003645470.1| hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889104|gb|AET38653.1| Hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
Length = 350
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 105/155 (67%), Gaps = 10/155 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ LPH+LFYGPPGTGKT+TILA ++L+ VLELNASD+RGI IVR+
Sbjct: 47 LKKTLESANLPHMLFYGPPGTGKTSTILALTKELFGPELMKTRVLELNASDERGISIVRE 106
Query: 357 QIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA S YK+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 107 KVKNFARLTVTTPSKEDLERHPCPPYKIIILDEADSMTADAQSALRRTMETYSNVTRFCL 166
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ICNY+++I + SRC++FRF PLD+S ++RL Y
Sbjct: 167 ICNYVTRIIDPLASRCSKFRFKPLDNSNALTRLQY 201
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 91/186 (48%), Gaps = 31/186 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF PLD+S ++RL Y+ +E + +
Sbjct: 155 METYSNVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNSNALTRLQYIASEESLTLADGA 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAA------------TAHADEVNEDTIFTLLVSRVEKYRP 108
I+D+S+GD+RK + +LQS A T+ +E+ +L+ V K
Sbjct: 215 LDKILDISEGDLRKGITLLQSVAKAVAYLDNAEITTSQVEELAGVVPEPVLLELVNKIES 274
Query: 109 STLDELVS-------------------HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGT 149
L E+++ H + E+ L L + + + RLA GT
Sbjct: 275 KDLKEIINYVNSFIKSGWCAASVISQLHDYYVKNDELDTEFKNKLFLLLFETDSRLANGT 334
Query: 150 SEKIQL 155
+E +QL
Sbjct: 335 NEHLQL 340
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP L+++ + + ++ L+ +++ + L G + S ++A
Sbjct: 26 VEKYRPKKLEDVTAQSHTVKVLKK--------TLESANLPHMLFYGPPGTGKTSTILALT 77
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
F K VLELNASD+RGI IVR+++ FA S YK+IIL
Sbjct: 78 KELFGPELMKTRVLELNASDERGISIVREKVKNFARLTVTTPSKEDLERHPCPPYKIIIL 137
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 138 DEADSMTADAQSALRRTM 155
>gi|374325546|ref|YP_005083743.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356640812|gb|AET31491.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 319
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 101/146 (69%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ ++PHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGI ++R
Sbjct: 27 RLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGINVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S I
Sbjct: 86 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYISGII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSR FRF PL + +RL Y
Sbjct: 146 EPIQSRTVMFRFSPLPKEAVFTRLRY 171
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 109/248 (43%), Gaps = 69/248 (27%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALIA 160
EKYRP + DE+V +++ + + +K D+ + L GT + L
Sbjct: 8 EKYRPRSFDEVVDLEEVKARLR--------GFVKSGDMPHLLFYGPPGTGKTTMALVLAR 59
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELNASD+RGI ++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ
Sbjct: 60 ELYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQ 119
Query: 221 ALRR-----------------------------------KLP------------------ 227
ALRR LP
Sbjct: 120 ALRRIMEIYAQNTRFILLANYISGIIEPIQSRTVMFRFSPLPKEAVFTRLRYIAENEGVK 179
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
++ D + I + + GDMR+ +N LQ AA+ EV E+ V ++G + +LR L
Sbjct: 180 ISDDALETIYEFTQGDMRRAINALQIAASVD-KEVTEEVVARALGMVS----PRLLREAL 234
Query: 288 NESMDLCY 295
+E++ +
Sbjct: 235 HEAVKGSF 242
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S I IQSR FRF PL + +RL Y+ E E V ++ D
Sbjct: 125 MEIYAQNTRFILLANYISGIIEPIQSRTVMFRFSPLPKEAVFTRLRYIAENEGVKISDDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
+ I + + GDMR+ +N LQ AA+ EV E+ +
Sbjct: 185 LETIYEFTQGDMRRAINALQIAASVD-KEVTEEVV 218
>gi|301758022|ref|XP_002914857.1| PREDICTED: replication factor C subunit 4-like [Ailuropoda
melanoleuca]
gi|281350719|gb|EFB26303.1| hypothetical protein PANDA_002794 [Ailuropoda melanoleuca]
Length = 363
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 137/245 (55%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 61 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 120
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 121 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 180
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL D + + N I Y +K+ E + K
Sbjct: 181 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKA 240
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR- 523
+ L + L EI E ++ D+ AG + + AA S
Sbjct: 241 ITF---LQSATRLTGGKEITEKVITDI------------AGVIPAQTIDGIFAACQSGSF 285
Query: 524 DKLEA 528
DKLEA
Sbjct: 286 DKLEA 290
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V ++ +G
Sbjct: 166 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEG 225
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA E+ E I
Sbjct: 226 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVI 261
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 22/156 (14%)
Query: 82 AATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDI 141
AATA + N+ T V VEKYRP +DE+ +++++ ++ L+ +D+
Sbjct: 22 AATAGSSGENKKT---KPVPWVEKYRPKCVDEIAFQEEVVAVLKKS--------LEGADL 70
Query: 142 EYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKT 197
L G + S ++AA F +L VLELNASD+RGI +VR+++ FA
Sbjct: 71 PNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV 130
Query: 198 MHKSS-------YKLIILDEADAMTNDAQNALRRKL 226
S +K++ILDEAD+MT+ AQ ALRR +
Sbjct: 131 SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTM 166
>gi|258564276|ref|XP_002582883.1| activator 1 37 kDa subunit [Uncinocarpus reesii 1704]
gi|237908390|gb|EEP82791.1| activator 1 37 kDa subunit [Uncinocarpus reesii 1704]
Length = 395
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 105/157 (66%), Gaps = 13/157 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA ++ L+ + + +LELNASD+RGI IVRD
Sbjct: 62 LQRTLQASNLPHMLFYGPPGTGKTSTILALSKSLFGPKLYRSRILELNASDERGINIVRD 121
Query: 357 QIFQFASTKTMHK-------------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
++ FA T+ H +K+IILDEAD+MT DAQ ALRR +E+F+ R
Sbjct: 122 KVKNFARTQLSHPPPQDSEYRKQYPCPPFKIIILDEADSMTQDAQAALRRTMERFSKITR 181
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
FC++CNY+++I + SRC++FRF LD S RL+
Sbjct: 182 FCLVCNYVTRIIDPLASRCSKFRFKTLDGSAAGGRLE 218
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 55/83 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ RFC++CNY+++I + SRC++FRF LD S RL+ +++ EK+ V
Sbjct: 173 MERFSKITRFCLVCNYVTRIIDPLASRCSKFRFKTLDGSAAGGRLEEIVKAEKLRVDDGV 232
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+R+ + +QSAA
Sbjct: 233 IDALIRCSEGDLRRAVTYMQSAA 255
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 75/143 (52%), Gaps = 27/143 (18%)
Query: 103 VEKY--RPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKY RP TLD++ + ++ ++ L+ S++ + L G + S ++A
Sbjct: 39 VEKYFSRPKTLDDVAAQDHTVTVLQ--------RTLQASNLPHMLFYGPPGTGKTSTILA 90
Query: 161 A----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-------------SSY 203
F + +LELNASD+RGI IVRD++ FA T+ H +
Sbjct: 91 LSKSLFGPKLYRSRILELNASDERGINIVRDKVKNFARTQLSHPPPQDSEYRKQYPCPPF 150
Query: 204 KLIILDEADAMTNDAQNALRRKL 226
K+IILDEAD+MT DAQ ALRR +
Sbjct: 151 KIIILDEADSMTQDAQAALRRTM 173
>gi|392567387|gb|EIW60562.1| replication factor C [Trametes versicolor FP-101664 SS1]
Length = 379
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 104/154 (67%), Gaps = 11/154 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + LPH+LFYGPPGTGKT+TILA AR+L+ F + VLELNASD+RGI IVR+
Sbjct: 48 LRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGPENFRSRVLELNASDERGISIVRE 107
Query: 357 QIFQFASTKTMHKS-----------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
+I FA ++ YK+IILDEAD+MT DAQ ALRRI+E + RFC
Sbjct: 108 KIKNFARQTPRAQAVSADGTVYPCPPYKIIILDEADSMTQDAQAALRRIMELYARITRFC 167
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
++CNY+++I + SRC++FRF PLD + +R+
Sbjct: 168 LVCNYVTRIIEPLASRCSKFRFKPLDPASTSARI 201
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RFC++CNY+++I + SRC++FRF PLD + +R+ V E V VTP+
Sbjct: 157 MELYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDPASTSARIAQVASAENVPVTPET 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S GD+R+ + LQSA+
Sbjct: 217 VDALISTSQGDLRRAITYLQSAS 239
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 93/221 (42%), Gaps = 76/221 (34%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T++++ + + ++ + L +++ + L G + S ++A
Sbjct: 27 VEKYRPKTIEDVSAQEHTVAVLR--------KTLTSTNLPHMLFYGPPGTGKTSTILALA 78
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS-----------SYKLII 207
F + VLELNASD+RGI IVR++I FA ++ YK+II
Sbjct: 79 RQLFGPENFRSRVLELNASDERGISIVREKIKNFARQTPRAQAVSADGTVYPCPPYKIII 138
Query: 208 LDEADAMTNDAQNALRR------------------------------------------- 224
LDEAD+MT DAQ ALRR
Sbjct: 139 LDEADSMTQDAQAALRRIMELYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDPASTS 198
Query: 225 ----------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAA 255
+PVTP+ A+I S GD+R+ + LQSA+
Sbjct: 199 ARIAQVASAENVPVTPETVDALISTSQGDLRRAITYLQSAS 239
>gi|19073950|ref|NP_584556.1| DNA REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|19068592|emb|CAD25060.1| DNA REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT [Encephalitozoon
cuniculi GB-M1]
Length = 305
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 142/273 (52%), Gaps = 67/273 (24%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
+P++LFYGPPGTGKTT+I A A L + VLELNASD+RGI VR+ I +FAST
Sbjct: 36 IPNMLFYGPPGTGKTTSIRAIANNLPRTS-----VLELNASDERGIATVRETIKEFAST- 89
Query: 366 TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRF 425
+ + KL+ILDEAD M+ DAQNALRRIIE F+ N RFC+I N+L KI I SRCT+F
Sbjct: 90 --YSKTMKLVILDEADMMSRDAQNALRRIIEDFSANTRFCLIANHLRKIISPILSRCTKF 147
Query: 426 RFGPLD-------------------------SSLIMS--RLDYDDISFFNIIIWYIKIQE 458
RFGP+ S + M R +DI + + +
Sbjct: 148 RFGPIGDTENRIEEICKRESIKYTPEGIKAVSRISMGDMRKAVNDIQGISASLGQVDESN 207
Query: 459 IKIEKGLALTDI------------LTEISLLVHRLEIPESMLVDLVL------------- 493
++ G+A + + + E+ + + RL SM D +L
Sbjct: 208 VRRFNGIAPSSVYEELFRNLGSMGMPELRVELERLRYEYSMDCDALLGNLGELVRESKMR 267
Query: 494 -------KMSDIEYRLAAGTSEKIQLSALIAAF 519
+MSDIEYR + G SEK+QL A+I+ F
Sbjct: 268 NKMKILKEMSDIEYRKSIGCSEKVQLDAIISIF 300
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 103/197 (52%), Gaps = 48/197 (24%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE F+ N RFC+I N+L KI I SRCT+FRFGP+ + +R++ + ++E + TP+G
Sbjct: 117 IEDFSANTRFCLIANHLRKIISPILSRCTKFRFGPIGDT--ENRIEEICKRESIKYTPEG 174
Query: 61 KKAIIDLSDGDMRKVLNILQ--SAATAHADEVNEDTIFTLLVSRVEKYRPSTL-DELVSH 117
KA+ +S GDMRK +N +Q SA+ DE N V R PS++ +EL +
Sbjct: 175 IKAVSRISMGDMRKAVNDIQGISASLGQVDESN--------VRRFNGIAPSSVYEELFRN 226
Query: 118 QDIISTIEIPE------------SMLVDLVL--------------------KMSDIEYRL 145
+ ++ +PE SM D +L +MSDIEYR
Sbjct: 227 ---LGSMGMPELRVELERLRYEYSMDCDALLGNLGELVRESKMRNKMKILKEMSDIEYRK 283
Query: 146 AAGTSEKIQLSALIAAF 162
+ G SEK+QL A+I+ F
Sbjct: 284 SIGCSEKVQLDAIISIF 300
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 101/213 (47%), Gaps = 65/213 (30%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP +L E+V +++++S+++ + ++ ++ + GT + + A+ A N
Sbjct: 7 EKYRPGSLLEVVGNREVVSSLQ-----SISSAGRIPNMLFYGPPGTGKTTSIRAI--ANN 59
Query: 164 SARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALR 223
R VLELNASD+RGI VR+ I +FAST + + KL+ILDEAD M+ DAQNALR
Sbjct: 60 LPRTS--VLELNASDERGIATVRETIKEFAST---YSKTMKLVILDEADMMSRDAQNALR 114
Query: 224 R---------------------------------------------------KLPVTPDG 232
R + TP+G
Sbjct: 115 RIIEDFSANTRFCLIANHLRKIISPILSRCTKFRFGPIGDTENRIEEICKRESIKYTPEG 174
Query: 233 KKAIIDLSDGDMRKVLNILQ--SAATAHADEVN 263
KA+ +S GDMRK +N +Q SA+ DE N
Sbjct: 175 IKAVSRISMGDMRKAVNDIQGISASLGQVDESN 207
>gi|50287127|ref|XP_445993.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525300|emb|CAG58917.1| unnamed protein product [Candida glabrata]
Length = 352
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 79/147 (53%), Positives = 103/147 (70%), Gaps = 12/147 (8%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPH+LFYGPPGTGKT+TILA ++L+ VLELNASD+RGI IVR+++ FA
Sbjct: 58 LPHMLFYGPPGTGKTSTILALTKELFGPELMKTRVLELNASDERGISIVREKVKNFARL- 116
Query: 366 TMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
T+ K S YK+IILDEAD+MT DAQ+ALRR +E ++T RFC+ICNY+++I
Sbjct: 117 TVSKPSKHDLENYLCPPYKIIILDEADSMTADAQSALRRTMETYSTVTRFCLICNYVTRI 176
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF LDSS + RL Y
Sbjct: 177 IDPLASRCSKFRFKSLDSSNALQRLKY 203
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 66/99 (66%), Gaps = 4/99 (4%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++T RFC+ICNY+++I + SRC++FRF LDSS + RL YV E+E V V
Sbjct: 157 METYSTVTRFCLICNYVTRIIDPLASRCSKFRFKSLDSSNALQRLKYVAEEEGVKVKAGS 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT----AHADEVNEDTI 95
+ I+D+S GD+R+ + +LQSA+ + DEV+++ +
Sbjct: 217 LETILDISAGDLRRAITLLQSASKNIGYSGEDEVSKELV 255
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 24/139 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LD++ + +++ ++ L +++ + L G + S ++A
Sbjct: 28 VEKYRPKKLDDVAAQDHVVNVLK--------KTLSSANLPHMLFYGPPGTGKTSTILALT 79
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----------YKLII 207
F K VLELNASD+RGI IVR+++ FA T+ K S YK+II
Sbjct: 80 KELFGPELMKTRVLELNASDERGISIVREKVKNFARL-TVSKPSKHDLENYLCPPYKIII 138
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEAD+MT DAQ+ALRR +
Sbjct: 139 LDEADSMTADAQSALRRTM 157
>gi|326429974|gb|EGD75544.1| replication factor C 4 [Salpingoeca sp. ATCC 50818]
Length = 345
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 101/147 (68%), Gaps = 6/147 (4%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
I ++PHLLFYGPPGTGKT+TILA +R+L+ VLELNASD+RGI +VR++I
Sbjct: 51 ISGADMPHLLFYGPPGTGKTSTILALSRELFGPQLMKERVLELNASDERGISVVREKIKT 110
Query: 361 FASTKTMHK------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
FAST +K+IILDEADAMT AQ+ALRR +EK++ RFC+ICNY+S+I
Sbjct: 111 FASTSVSKGVDGYPCPPFKIIILDEADAMTAAAQSALRRTMEKYSNVTRFCLICNYISRI 170
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC +FRF PL ++ RL +
Sbjct: 171 IEPLASRCAKFRFKPLSRDTLVGRLQH 197
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 93/188 (49%), Gaps = 28/188 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RFC+ICNY+S+I + SRC +FRF PL ++ RL ++ ++E V + +
Sbjct: 151 MEKYSNVTRFCLICNYISRIIEPLASRCAKFRFKPLSRDTLVGRLQHIRDKEDVQCSDEV 210
Query: 61 KKAIIDLSDGDMRKVLNILQSAA---------TAHADEVN---EDTIFTLLVSRVEKYRP 108
IIDL DGDMR+ + LQSA+ H +E+ + + T L+ + +
Sbjct: 211 LARIIDLVDGDMRQAITFLQSASRLCGSSGVEVHHVEEIAGAIPNAVMTDLLDKCRQGSF 270
Query: 109 STLDELVSH----------------QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
L E V Q ++ +I ++ D+ K++ ++ RL G E+
Sbjct: 271 ENLQETVQSILLDGFSADTIVEELLQLVVEADDISDTQKADIAHKLAQVDKRLVDGADEE 330
Query: 153 IQLSALIA 160
+Q+ L A
Sbjct: 331 LQIMDLCA 338
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 71/134 (52%), Gaps = 18/134 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T ++ +I+T+ + +D+ + L G + S ++A
Sbjct: 26 VEKYRPRTTADVAHQSQVIATLRA--------TISGADMPHLLFYGPPGTGKTSTILALS 77
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK------SSYKLIILDEAD 212
F K VLELNASD+RGI +VR++I FAST +K+IILDEAD
Sbjct: 78 RELFGPQLMKERVLELNASDERGISVVREKIKTFASTSVSKGVDGYPCPPFKIIILDEAD 137
Query: 213 AMTNDAQNALRRKL 226
AMT AQ+ALRR +
Sbjct: 138 AMTAAAQSALRRTM 151
>gi|410970795|ref|XP_003991862.1| PREDICTED: replication factor C subunit 4 [Felis catus]
Length = 362
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 136/245 (55%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 60 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 119
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 120 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 179
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL D + + N I Y +K+ E + K
Sbjct: 180 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKA 239
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR- 523
+ L + L EI E ++ D+ AG + L AA S
Sbjct: 240 ITF---LQSATRLTGGKEITEKVITDI------------AGVIPAETIDGLFAACQSGSF 284
Query: 524 DKLEA 528
DKLE
Sbjct: 285 DKLEG 289
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V ++ +G
Sbjct: 165 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEG 224
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA E+ E I
Sbjct: 225 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVI 260
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 36 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 87
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 88 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 147
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 148 DEADSMTSAAQAALRRTM 165
>gi|119872170|ref|YP_930177.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415670|sp|A1RSA2.1|RFCS1_PYRIL RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|119673578|gb|ABL87834.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 329
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 101/146 (69%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ +PHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGI ++R
Sbjct: 27 RLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGINVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S+I
Sbjct: 86 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
I SRC FRF P+ L+ RL Y
Sbjct: 146 DPIISRCAVFRFSPMPRHLMAERLKY 171
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 28/201 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S+I I SRC FRF P+ L+ RL Y+ + E V V D
Sbjct: 125 MEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLKYIAKSEGVEVKEDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI---------------FTLLVS---- 101
I +LS+GDMRK +NILQ AA + V+ + + F L +S
Sbjct: 185 IDLIYELSEGDMRKAINILQVAAATNKI-VDRNVVAAAAAAIRPTDIVELFNLALSGDYL 243
Query: 102 -RVEKYRPSTLDELVSHQDIISTIE-------IPESMLVDLVLKMSDIEYRLAAGTSEKI 153
EK R + V+ D I + + + ++ ++D++YRL G E+I
Sbjct: 244 KAREKMRELMYVKGVAGVDFIRAFQRELIRMSLDDETKAEVAELLADVDYRLTQGADEEI 303
Query: 154 QLSALIAAFNSARDKLEVLEL 174
QLS +A S K+ L
Sbjct: 304 QLSYFLAKLGSIGKKIRAASL 324
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 92/209 (44%), Gaps = 60/209 (28%)
Query: 104 EKYRPSTLDELVSHQDIISTI-EIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
EKYRP + DE+V +++ S + E +S M + + GT + L
Sbjct: 8 EKYRPRSFDEVVDLEEVKSRLREFVKSG------NMPHLLFYGPPGTGKTTMALVLAREL 61
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
+ LELNASD+RGI ++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ AL
Sbjct: 62 YGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQAL 121
Query: 223 RRKLPVTPDGKKAII--------------------------------------------- 237
RR + + + I+
Sbjct: 122 RRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLKYIAKSEGVEVK 181
Query: 238 --------DLSDGDMRKVLNILQSAATAH 258
+LS+GDMRK +NILQ AA +
Sbjct: 182 EDAIDLIYELSEGDMRKAINILQVAAATN 210
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
K++E+ KG+A D + + R+ + + ++ ++D++YRL G E+IQLS
Sbjct: 248 KMRELMYVKGVAGVDFIRAFQRELIRMSLDDETKAEVAELLADVDYRLTQGADEEIQLSY 307
Query: 515 LIAAFNSARDKLEA---PP 530
+A S K+ A PP
Sbjct: 308 FLAKLGSIGKKIRAASLPP 326
>gi|320032378|gb|EFW14331.1| DNA replication factor C subunit Rfc2 [Coccidioides posadasii str.
Silveira]
Length = 393
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 107/157 (68%), Gaps = 13/157 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A+ L+ + + +LELNASD+RGI IVR+
Sbjct: 60 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPKLYRSRILELNASDERGINIVRE 119
Query: 357 QIFQFA----STKTMHKSSY---------KLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+I FA S H S Y K+IILDEAD+MT DAQ+ALRR +E+F+ R
Sbjct: 120 KIKDFARIQLSHPPAHDSEYRKQYPCPPFKIIILDEADSMTQDAQSALRRTMERFSRITR 179
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
FC++CNY+++I + SRC++FRF LD S +RL+
Sbjct: 180 FCLVCNYVTRIIDPLASRCSKFRFKSLDGSAAGTRLE 216
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 29/163 (17%)
Query: 81 SAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSD 140
S + + ADE ++ + L VEKYRP TLD++ + ++ ++ L+ S+
Sbjct: 21 SKSKSTADEADK----SKLQPWVEKYRPKTLDDVAAQDHTVTVLQ--------RTLQASN 68
Query: 141 IEYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFA--- 193
+ + L G + S ++A F + +LELNASD+RGI IVR++I FA
Sbjct: 69 LPHMLFYGPPGTGKTSTILALAKSLFGPKLYRSRILELNASDERGINIVREKIKDFARIQ 128
Query: 194 -STKTMHKSSY---------KLIILDEADAMTNDAQNALRRKL 226
S H S Y K+IILDEAD+MT DAQ+ALRR +
Sbjct: 129 LSHPPAHDSEYRKQYPCPPFKIIILDEADSMTQDAQSALRRTM 171
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ RFC++CNY+++I + SRC++FRF LD S +RL+ + + EK+ +
Sbjct: 171 MERFSRITRFCLVCNYVTRIIDPLASRCSKFRFKSLDGSAAGTRLEEIAKTEKLRLDNGV 230
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+R+ + +QSAA
Sbjct: 231 VDALIRCSEGDLRRAITYMQSAA 253
>gi|119177342|ref|XP_001240460.1| hypothetical protein CIMG_07623 [Coccidioides immitis RS]
gi|303316031|ref|XP_003068020.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735
delta SOWgp]
gi|240107696|gb|EER25875.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735
delta SOWgp]
Length = 393
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 107/157 (68%), Gaps = 13/157 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A+ L+ + + +LELNASD+RGI IVR+
Sbjct: 60 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPKLYRSRILELNASDERGINIVRE 119
Query: 357 QIFQFA----STKTMHKSSY---------KLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+I FA S H S Y K+IILDEAD+MT DAQ+ALRR +E+F+ R
Sbjct: 120 KIKDFARIQLSHPPAHDSEYRKQYPCPPFKIIILDEADSMTQDAQSALRRTMERFSRITR 179
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
FC++CNY+++I + SRC++FRF LD S +RL+
Sbjct: 180 FCLVCNYVTRIIDPLASRCSKFRFKSLDGSAAGTRLE 216
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 29/163 (17%)
Query: 81 SAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSD 140
S + + ADE ++ + L VEKYRP TLD++ + ++ ++ L+ S+
Sbjct: 21 SKSKSTADEADK----SKLQPWVEKYRPKTLDDVAAQDHTVTVLQ--------RTLQASN 68
Query: 141 IEYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFA--- 193
+ + L G + S ++A F + +LELNASD+RGI IVR++I FA
Sbjct: 69 LPHMLFYGPPGTGKTSTILALAKSLFGPKLYRSRILELNASDERGINIVREKIKDFARIQ 128
Query: 194 -STKTMHKSSY---------KLIILDEADAMTNDAQNALRRKL 226
S H S Y K+IILDEAD+MT DAQ+ALRR +
Sbjct: 129 LSHPPAHDSEYRKQYPCPPFKIIILDEADSMTQDAQSALRRTM 171
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ RFC++CNY+++I + SRC++FRF LD S +RL+ + + EK+ +
Sbjct: 171 MERFSRITRFCLVCNYVTRIIDPLASRCSKFRFKSLDGSAAGTRLEEIAKTEKLRLDNGV 230
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+R+ + +QSAA
Sbjct: 231 VDALIRCSEGDLRRAITYMQSAA 253
>gi|325969252|ref|YP_004245444.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
gi|323708455|gb|ADY01942.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 327
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 102/144 (70%), Gaps = 1/144 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ + +PHLLF+GPPGTGKTT LA AR+LY A + VLELNASD+RGI ++R
Sbjct: 29 RVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYGDA-WRENVLELNASDERGIAMIR 87
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T K+ ++LIILDEAD MT DAQ ALRRI+E +T++VRF ++ NY S I
Sbjct: 88 EKVKEFAKTIPTVKAPFRLIILDEADNMTPDAQQALRRIMEMYTSSVRFILLANYSSGII 147
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC+ FRF PL ++ RL
Sbjct: 148 EPIQSRCSLFRFSPLPKDAVLGRL 171
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 110/237 (46%), Gaps = 65/237 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
VEKYRPS +D+++ + + ++ ML + +I + L GT + A+
Sbjct: 9 VEKYRPSRIDDIIDQDHVKARVK---EMLAN-----GNIPHLLFFGPPGTGKTTMALAIA 60
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
+ VLELNASD+RGI ++R+++ +FA T K+ ++LIILDEAD MT DAQ
Sbjct: 61 RELYGDAWRENVLELNASDERGIAMIREKVKEFAKTIPTVKAPFRLIILDEADNMTPDAQ 120
Query: 220 NALRR-----------------------------------KLP----------------- 227
ALRR LP
Sbjct: 121 QALRRIMEMYTSSVRFILLANYSSGIIEPIQSRCSLFRFSPLPKDAVLGRLRDIASREGV 180
Query: 228 -VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
VT + +AI D+S GDMRK +N LQ+AA+ V+E+ VY ++G + T + I+
Sbjct: 181 KVTDEALEAIWDISQGDMRKAINTLQAAASL-GGVVDEEAVYKALGKVSPTRVRAII 236
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 32/186 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T++VRF ++ NY S I IQSRC+ FRF PL ++ RL + +E V VT +
Sbjct: 127 MEMYTSSVRFILLANYSSGIIEPIQSRCSLFRFSPLPKDAVLGRLRDIASREGVKVTDEA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL----VSRVEK----------- 105
+AI D+S GDMRK +N LQ+AA+ V+E+ ++ L +RV
Sbjct: 187 LEAIWDISQGDMRKAINTLQAAASL-GGVVDEEAVYKALGKVSPTRVRAIITEAVIGDFS 245
Query: 106 ---------YRPSTLDEL----VSHQDIIST---IEIPESMLVDLVLKMSDIEYRLAAGT 149
R D L ++H+++ S +++PE + + + + YRL G+
Sbjct: 246 KAVKEAMSLIRDEGADPLDIIKIAHREVASATSQLKVPEELKPKAIYIVGEHHYRLLRGS 305
Query: 150 SEKIQL 155
S ++Q+
Sbjct: 306 SGELQV 311
>gi|150865911|ref|XP_001385318.2| Replication factor C, subunit RFC4 [Scheffersomyces stipitis CBS
6054]
gi|149387167|gb|ABN67289.2| Replication factor C, subunit RFC4 [Scheffersomyces stipitis CBS
6054]
Length = 369
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 109/163 (66%), Gaps = 11/163 (6%)
Query: 290 SMDLCYKI-NRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD 348
S D K+ + ++ LPH+LFYGPPGTGKT+TILA +++LY + + VLELNASD+
Sbjct: 39 SQDHAVKVLKKTMESANLPHMLFYGPPGTGKTSTILALSKQLYGPNLYKSRVLELNASDE 98
Query: 349 RGIGIVRDQIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKF 398
RGI IVR +I FA + S YK+IILDEAD+MTNDAQ ALRR IE +
Sbjct: 99 RGISIVRQKIKNFARLTVSNPSKEDLEKYPCPPYKIIILDEADSMTNDAQAALRRTIENY 158
Query: 399 TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ RFC+ICNY+++I + SRC++FRF L++ ++RL Y
Sbjct: 159 SNITRFCLICNYVTRIIDPLASRCSKFRFRLLNNENALNRLKY 201
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 78/142 (54%), Gaps = 16/142 (11%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RFC+ICNY+++I + SRC++FRF L++ ++RL Y+ EQE +++ +
Sbjct: 155 IENYSNITRFCLICNYVTRIIDPLASRCSKFRFRLLNNENALNRLKYIAEQEHISLDSNQ 214
Query: 61 --KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ 118
+ ++ +S GD+RK + LQSA H +L E LDE+
Sbjct: 215 LVLQEVLRISGGDLRKAITFLQSATKLHK---------SLAAPTEEDGDIQMLDEIPGEA 265
Query: 119 DIISTIE-----IPESMLVDLV 135
+ +I+ IPE++++++V
Sbjct: 266 ITVESIQEIAGVIPENVILEVV 287
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 72/138 (52%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LD++ S + ++ ++ +++ + L G + S ++A
Sbjct: 26 VEKYRPRNLDDVASQDHAVKVLK--------KTMESANLPHMLFYGPPGTGKTSTILALS 77
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR +I FA + S YK+IIL
Sbjct: 78 KQLYGPNLYKSRVLELNASDERGISIVRQKIKNFARLTVSNPSKEDLEKYPCPPYKIIIL 137
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MTNDAQ ALRR +
Sbjct: 138 DEADSMTNDAQAALRRTI 155
>gi|18312140|ref|NP_558807.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559513|sp|Q8ZYK4.1|RFCS1_PYRAE RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|18159573|gb|AAL62989.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 329
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 102/146 (69%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ +PHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGI ++R
Sbjct: 27 RLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGINVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S+I
Sbjct: 86 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
I SRC FRF P+ SL+ RL +
Sbjct: 146 DPIISRCAVFRFSPMPRSLMAERLKF 171
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 26/190 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S+I I SRC FRF P+ SL+ RL ++ + E V + D
Sbjct: 125 MEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKNEGVELREDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH-----------------AD--EVNEDTIFTLLVS 101
I +LS+GDMRK +N+LQ AA + AD E+ I V
Sbjct: 185 INMIYELSEGDMRKAINLLQVAAATNKVVDANAVASAAIAVRPADIIELFNLAISGDFVK 244
Query: 102 RVEKYRPSTLDELVSHQDIISTIE-------IPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
EK R + ++ D I + I + + ++ ++D++YRL G E+IQ
Sbjct: 245 AREKLRELMYLKGIAGADFIRAFQRELIRMPIDDDIKAEIAELLADVDYRLTQGADEEIQ 304
Query: 155 LSALIAAFNS 164
L+ L+ +
Sbjct: 305 LTYLLTKLGA 314
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 62/210 (29%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP + DE+V +++ ++ L + V M + + GT + L
Sbjct: 8 EKYRPRSFDEVVDLEEV-------KARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARE 60
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ A
Sbjct: 61 LYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQA 120
Query: 222 LRRKLPVTPDGKKAII-------------------------------------------- 237
LRR + + + I+
Sbjct: 121 LRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKNEGVEL 180
Query: 238 ---------DLSDGDMRKVLNILQSAATAH 258
+LS+GDMRK +N+LQ AA +
Sbjct: 181 REDAINMIYELSEGDMRKAINLLQVAAATN 210
>gi|213512735|ref|NP_001134241.1| replication factor C subunit 4 [Salmo salar]
gi|209731766|gb|ACI66752.1| Replication factor C subunit 4 [Salmo salar]
Length = 355
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 144/234 (61%), Gaps = 20/234 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + I+ +LP+LLFYGPPGTGKT+TILA AR+LY + VLELNASD+RGI +VR+
Sbjct: 56 LKKTIEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVRE 115
Query: 357 QIFQFAS-TKTMHKS------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ +FA T H++ +K+IILDEAD+MTN AQ ALRR +EK + RFC+ICN
Sbjct: 116 KVKRFAQLTVAGHRTDGKPCPPFKIIILDEADSMTNAAQAALRRTMEKESRTTRFCLICN 175
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFN-IIIWYIKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + + RL D +++ + I +K+ E + K
Sbjct: 176 YISRIIEPLTSRCSKFRFKPLANQVQEERLLDICDKENLKYSKEGIAALVKVSEGDLRKA 235
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLV----LKMSDIEYRLA-AGTSEKIQLS 513
+ L + L EI ES ++++ KM D ++ GT EK++++
Sbjct: 236 ITF---LQSAARLNTDNEITESAVIEIAGVVPPKMIDNLLKICYKGTFEKLEIA 286
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 117/262 (44%), Gaps = 81/262 (30%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP ++E+ +++++ ++ ++ +D+ L G + S ++
Sbjct: 32 VPWVEKYRPKCMEEVAFQEEVVAVLK--------KTIEGADLPNLLFYGPPGTGKTSTIL 83
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS-TKTMHKS------SYKLIIL 208
AA + + VLELNASD+RGI +VR+++ +FA T H++ +K+IIL
Sbjct: 84 AAARELYGPELYRQRVLELNASDERGIQVVREKVKRFAQLTVAGHRTDGKPCPPFKIIIL 143
Query: 209 DEADAMTNDAQNALRRKL---------------------PVT------------------ 229
DEAD+MTN AQ ALRR + P+T
Sbjct: 144 DEADSMTNAAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANQVQEE 203
Query: 230 --------------PDGKKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTVYNSVGYP 274
+G A++ +S+GD+RK + LQSAA + D E+ E V G
Sbjct: 204 RLLDICDKENLKYSKEGIAALVKVSEGDLRKAITFLQSAARLNTDNEITESAVIEIAGVV 263
Query: 275 TKTEITNILRWLLNESMDLCYK 296
I N+L+ +CYK
Sbjct: 264 PPKMIDNLLK--------ICYK 277
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + + RL + ++E + + +G
Sbjct: 161 MEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANQVQEERLLDICDKENLKYSKEG 220
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTIFTL 98
A++ +S+GD+RK + LQSAA + D E+ E + +
Sbjct: 221 IAALVKVSEGDLRKAITFLQSAARLNTDNEITESAVIEI 259
>gi|350296832|gb|EGZ77809.1| activator 1 41 kDa subunit [Neurospora tetrasperma FGSC 2509]
Length = 387
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 105/154 (68%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A++LY A VLELNASD+RGI IVR+
Sbjct: 56 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPELIKARVLELNASDERGISIVRE 115
Query: 357 QIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + + S+ +KLIILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 116 KVKDFARMQLTNPSAAYKARYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCL 175
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF LD RL+
Sbjct: 176 ICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLE 209
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL ++ + I+ ++ L+ S++ + L G + S ++A
Sbjct: 35 VEKYRPKTLSDVTAQDHTITVLQ--------RTLQASNLPHMLFYGPPGTGKTSTILALA 86
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR+++ FA + + S+ +KLIIL
Sbjct: 87 KELYGPELIKARVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPPFKLIIL 146
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 147 DEADSMTQDAQSALRRTM 164
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD RL+ + + E V +
Sbjct: 164 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGA 223
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+RK + LQSAA
Sbjct: 224 IDALIKCSEGDLRKAITYLQSAA 246
>gi|343113485|gb|AEL87701.1| replication factor C 4 [Strongylocentrotus nudus]
Length = 355
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 87/207 (42%), Positives = 134/207 (64%), Gaps = 21/207 (10%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LP++LFYGPPGTGKT+TILA +R+L+ + + VLELNASD+RGI +VRD++ +FA T
Sbjct: 60 DLPNMLFYGPPGTGKTSTILAASRELFGADMYRSRVLELNASDERGIQVVRDKVKKFAQT 119
Query: 365 KTMH-------KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
+ +K+IILDEAD+MTNDAQ ALRR +EK + N +FC+ICNY+S+I
Sbjct: 120 AAGGIRPDGKPRPPFKIIILDEADSMTNDAQAALRRTMEKQSKNTKFCLICNYISRIIEP 179
Query: 418 IQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWYIKIQEIKIEKGLALTDILTE 473
+ SRC++FRF PL + +L + ++I+ + I +K+ +G D+
Sbjct: 180 LTSRCSKFRFKPLSKPIQGKKLREICEVENINCGEEALDAI----LKLSEG----DMRKS 231
Query: 474 ISLL--VHRLEIPESMLVDLVLKMSDI 498
I+ L VHRL+ + + V+ V +++ +
Sbjct: 232 ITFLQSVHRLQREDGIRVEDVYEIAGV 258
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 106/238 (44%), Gaps = 73/238 (30%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP T+DE+ ++++ ++ L+ +D+ L G + S ++
Sbjct: 28 VPWVEKYRPRTVDEVAYQDEVVAVLKKS--------LQGADLPNMLFYGPPGTGKTSTIL 79
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH-------KSSYKLIIL 208
AA F + + VLELNASD+RGI +VRD++ +FA T + +K+IIL
Sbjct: 80 AASRELFGADMYRSRVLELNASDERGIQVVRDKVKKFAQTAAGGIRPDGKPRPPFKIIIL 139
Query: 209 DEADAMTNDAQNALRRKL---------------------PVTP--------------DGK 233
DEAD+MTNDAQ ALRR + P+T GK
Sbjct: 140 DEADSMTNDAQAALRRTMEKQSKNTKFCLICNYISRIIEPLTSRCSKFRFKPLSKPIQGK 199
Query: 234 K------------------AIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVG 272
K AI+ LS+GDMRK + LQS D + + VY G
Sbjct: 200 KLREICEVENINCGEEALDAILKLSEGDMRKSITFLQSVHRLQREDGIRVEDVYEIAG 257
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + N +FC+ICNY+S+I + SRC++FRF PL + +L + E E +N +
Sbjct: 157 MEKQSKNTKFCLICNYISRIIEPLTSRCSKFRFKPLSKPIQGKKLREICEVENINCGEEA 216
Query: 61 KKAIIDLSDGDMRKVLNILQS 81
AI+ LS+GDMRK + LQS
Sbjct: 217 LDAILKLSEGDMRKSITFLQS 237
>gi|449329297|gb|AGE95570.1| DNA replication factor c subunit [Encephalitozoon cuniculi]
Length = 305
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 141/275 (51%), Gaps = 71/275 (25%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
+P++LFYGPPGTGKTT+I A A L + VLELNASD+RGI VR+ I +FAST
Sbjct: 36 IPNMLFYGPPGTGKTTSIRAIANNLPRTS-----VLELNASDERGIATVRETIKEFAST- 89
Query: 366 TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRF 425
+ + KL+ILDEAD M+ DAQNALRRIIE F+ N RFC+I N+L KI I SRCT+F
Sbjct: 90 --YSKTMKLVILDEADMMSRDAQNALRRIIEDFSANTRFCLIANHLRKIISPILSRCTKF 147
Query: 426 RFGPLDS------------------------------------------SLIMSRLDYDD 443
RFGP+ S + ++D +
Sbjct: 148 RFGPIGDTENRIEEICKRESIKYTPEGIKAVSRISMGDMRKAVNDIQGISASLGQVDESN 207
Query: 444 ISFFNIII-------------------WYIKIQEIKIEKGLALTDILTEISLLVHRLEIP 484
+ FN I ++++ ++ E G+ +L + LV ++
Sbjct: 208 VRRFNGIAPSSVYEELFRNLGSMGMPELRVELERLRYEYGMDCDALLGNLGELVRESKMR 267
Query: 485 ESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 519
M ++ +MSDIEYR + G SEK+Q A+I+ F
Sbjct: 268 NKM--KILKEMSDIEYRKSIGCSEKVQSDAIISIF 300
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 101/197 (51%), Gaps = 48/197 (24%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE F+ N RFC+I N+L KI I SRCT+FRFGP+ + +R++ + ++E + TP+G
Sbjct: 117 IEDFSANTRFCLIANHLRKIISPILSRCTKFRFGPIGDT--ENRIEEICKRESIKYTPEG 174
Query: 61 KKAIIDLSDGDMRKVLNILQ--SAATAHADEVNEDTIFTLLVSRVEKYRPSTL-DELVSH 117
KA+ +S GDMRK +N +Q SA+ DE N V R PS++ +EL +
Sbjct: 175 IKAVSRISMGDMRKAVNDIQGISASLGQVDESN--------VRRFNGIAPSSVYEELFRN 226
Query: 118 QDIISTIEIPE------------SMLVDLVL--------------------KMSDIEYRL 145
+ ++ +PE M D +L +MSDIEYR
Sbjct: 227 ---LGSMGMPELRVELERLRYEYGMDCDALLGNLGELVRESKMRNKMKILKEMSDIEYRK 283
Query: 146 AAGTSEKIQLSALIAAF 162
+ G SEK+Q A+I+ F
Sbjct: 284 SIGCSEKVQSDAIISIF 300
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 101/213 (47%), Gaps = 65/213 (30%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP +L E+V +++++S+++ + ++ ++ + GT + + A+ A N
Sbjct: 7 EKYRPGSLLEVVGNREVVSSLQ-----SISSAGRIPNMLFYGPPGTGKTTSIRAI--ANN 59
Query: 164 SARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALR 223
R VLELNASD+RGI VR+ I +FAST + + KL+ILDEAD M+ DAQNALR
Sbjct: 60 LPRTS--VLELNASDERGIATVRETIKEFAST---YSKTMKLVILDEADMMSRDAQNALR 114
Query: 224 R---------------------------------------------------KLPVTPDG 232
R + TP+G
Sbjct: 115 RIIEDFSANTRFCLIANHLRKIISPILSRCTKFRFGPIGDTENRIEEICKRESIKYTPEG 174
Query: 233 KKAIIDLSDGDMRKVLNILQ--SAATAHADEVN 263
KA+ +S GDMRK +N +Q SA+ DE N
Sbjct: 175 IKAVSRISMGDMRKAVNDIQGISASLGQVDESN 207
>gi|327311517|ref|YP_004338414.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326947996|gb|AEA13102.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 328
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 100/146 (68%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ +PHLLFYGPPGTGKTT L AR+LY A + LELNASD+RGI ++R
Sbjct: 29 RLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGDA-WRENTLELNASDERGINVIR 87
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + RF ++ NY+S+I
Sbjct: 88 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEMYANTTRFILLANYVSRII 147
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
I SRC FRF P+ L+ RL Y
Sbjct: 148 DPIISRCAVFRFPPMPKELMAKRLAY 173
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 94/185 (50%), Gaps = 26/185 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF ++ NY+S+I I SRC FRF P+ L+ RL Y+ +QE + VT DG
Sbjct: 127 MEMYANTTRFILLANYVSRIIDPIISRCAVFRFPPMPKELMAKRLAYIAKQEGITVTEDG 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNE---------------DTIFTLLVSRVEK 105
AI ++S GDMR+ +N+LQ AA A E D T L VEK
Sbjct: 187 IDAIYEISQGDMRRAINLLQMAAAASRSVDKESVAAVASAARPSEILDVFNTALSGDVEK 246
Query: 106 YRP-----------STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
R + +D L + Q + I++ + V + +SD++YRLA G+ E++Q
Sbjct: 247 AREKLRDLMYMKGIAGVDFLRALQRELPRIQLDDETKVAVAELLSDVDYRLAEGSDEELQ 306
Query: 155 LSALI 159
L+ ++
Sbjct: 307 LTYML 311
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 94/209 (44%), Gaps = 62/209 (29%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP + +E+V +++ ++ L + V M + + GT + L
Sbjct: 10 EKYRPRSFEEVVDLEEV-------KARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARE 62
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ A
Sbjct: 63 LYGDAWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQA 122
Query: 222 LRR--------------------------------KLP---------------------V 228
LRR + P V
Sbjct: 123 LRRIMEMYANTTRFILLANYVSRIIDPIISRCAVFRFPPMPKELMAKRLAYIAKQEGITV 182
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATA 257
T DG AI ++S GDMR+ +N+LQ AA A
Sbjct: 183 TEDGIDAIYEISQGDMRRAINLLQMAAAA 211
>gi|374109199|gb|AEY98105.1| FAFR422Wp [Ashbya gossypii FDAG1]
Length = 349
Score = 161 bits (407), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 74/154 (48%), Positives = 107/154 (69%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R ++ LPH+LFYGPPGTGKT+TILA ++L+ + + VLELNASD+RGI IVR+
Sbjct: 46 LKRTLESANLPHMLFYGPPGTGKTSTILALTKELFGPSLMKSRVLELNASDERGISIVRE 105
Query: 357 QIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + + YK+IILDEAD+MT DAQ+ALRR +E +++ RFC+
Sbjct: 106 KVKNFARLTVTNPTKEDLEQYPCPPYKIIILDEADSMTADAQSALRRTMETYSSVTRFCL 165
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF PLD+ + RL+
Sbjct: 166 ICNYVTRIIDPLASRCSKFRFKPLDNVNALGRLE 199
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 31/186 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +++ RFC+ICNY+++I + SRC++FRF PLD+ + RL+ + +QE ++
Sbjct: 154 METYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNVNALGRLEQIAQQEALSYEAGA 213
Query: 61 KKAIIDLSDGDMRKVLNILQSAA------------TAHADE---VNEDTIFTLLVSRVEK 105
+ ++ +++GD+RK + +LQ+AA TA +E V D I LV ++E
Sbjct: 214 LEKVLHIAEGDLRKAITLLQTAAKMTSYMAAEKITTAQVEELAGVVPDDIIKGLVEKIES 273
Query: 106 YRPSTLDELVSH--------QDIISTI--------EIPESMLVDLVLKMSDIEYRLAAGT 149
+ + + V+ IIS + E+ + L + + RL+ GT
Sbjct: 274 KDLTEITKFVNKVVKSGWCGSSIISQLHDYYAENNELDAEKKTKIFLLLFKTDSRLSNGT 333
Query: 150 SEKIQL 155
E IQL
Sbjct: 334 DEHIQL 339
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LD++ S I+ ++ L+ +++ + L G + S ++A
Sbjct: 25 VEKYRPRKLDDVASQAHAITVLK--------RTLESANLPHMLFYGPPGTGKTSTILALT 76
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
F + K VLELNASD+RGI IVR+++ FA + + YK+IIL
Sbjct: 77 KELFGPSLMKSRVLELNASDERGISIVREKVKNFARLTVTNPTKEDLEQYPCPPYKIIIL 136
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 137 DEADSMTADAQSALRRTM 154
>gi|385304250|gb|EIF48275.1| activator 1 41 kda subunit [Dekkera bruxellensis AWRI1499]
Length = 380
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/146 (52%), Positives = 100/146 (68%), Gaps = 10/146 (6%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPH+LFYGPPGTGKT+TILA A++LY F VLELNASD+RGI IVR++I FA
Sbjct: 54 LPHMLFYGPPGTGKTSTILAMAKQLYGPRLFKTRVLELNASDERGISIVRERIKGFARLT 113
Query: 366 TMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
YK+IILDEAD+MT DAQ+ALRR +E ++ RFC+ICNY+++I
Sbjct: 114 VSRPXQEDKANYPCPPYKMIILDEADSMTGDAQSALRRTMETYSGITRFCLICNYVTRII 173
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF LD ++RL+Y
Sbjct: 174 DPLASRCSKFRFKSLDEGSALTRLEY 199
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 57/83 (68%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD ++RL+Y+ +E ++V +
Sbjct: 153 METYSGITRFCLICNYVTRIIDPLASRCSKFRFKSLDEGSALTRLEYICGKESIDVDTNI 212
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
K I+ +S+GD+R+ +N LQS +
Sbjct: 213 LKEILRISEGDLRRAINYLQSVS 235
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 75/138 (54%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LDE+ S + +T++I + L+ +++ + L G + S ++A
Sbjct: 24 VEKYRPKNLDEVSSQK---TTVQI-----LKKNLETANLPHMLFYGPPGTGKTSTILAMA 75
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR++I FA YK+IIL
Sbjct: 76 KQLYGPRLFKTRVLELNASDERGISIVRERIKGFARLTVSRPXQEDKANYPCPPYKMIIL 135
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 136 DEADSMTGDAQSALRRTM 153
>gi|224000545|ref|XP_002289945.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
gi|220975153|gb|EED93482.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
Length = 346
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/148 (51%), Positives = 100/148 (67%), Gaps = 7/148 (4%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
++ N LPHLLFYGPPGTGKT+ LA R+L+ +Q VLELNASD+RGI +VRD+I
Sbjct: 43 VETNRLPHLLFYGPPGTGKTSVALALCRQLFEPSQLRRRVLELNASDERGISVVRDKIKH 102
Query: 361 FAS-------TKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
FAS TK +K+IILDEAD +T DAQ ALRR+IE ++ RF +ICNY+++
Sbjct: 103 FASLAIDTETTKKYPNPPFKIIILDEADTVTRDAQAALRRVIEAYSKVTRFILICNYVTR 162
Query: 414 IPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
I + SRC +FRF PL + +R+ Y
Sbjct: 163 IIEPLASRCAKFRFQPLPVESMKARIKY 190
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 111/260 (42%), Gaps = 77/260 (29%)
Query: 103 VEKYRPSTLDELVSHQ-DIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
VE+YRP +L + VSHQ +IIST++ + + L L+ Y + L+
Sbjct: 18 VERYRPKSLQD-VSHQGEIISTLKNAVETNRLPHLLF------YGPPGTGKTSVALALCR 70
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFAS-------TKTMHKSSYKLIILDEAD 212
F ++ + VLELNASD+RGI +VRD+I FAS TK +K+IILDEAD
Sbjct: 71 QLFEPSQLRRRVLELNASDERGISVVRDKIKHFASLAIDTETTKKYPNPPFKIIILDEAD 130
Query: 213 AMTNDAQNALRR-----------------------------------KLPVTP------- 230
+T DAQ ALRR LPV
Sbjct: 131 TVTRDAQAALRRVIEAYSKVTRFILICNYVTRIIEPLASRCAKFRFQPLPVESMKARIKY 190
Query: 231 ----------DGKK-----AIIDLSDGDMRKVLNILQSAA--TAHADEV-NEDTVYNSVG 272
+GK+ I+ LS GDMR+ + LQSA + A EV +D++ G
Sbjct: 191 IAHEEHCQFEEGKEEEVVDEILTLSQGDMRRAVTTLQSAHSLSGGAGEVIKKDSIAEMAG 250
Query: 273 YPTKTEITNILRWLLNESMD 292
P I ++ L D
Sbjct: 251 LPPPALIDGLIEVLRTGKFD 270
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RF +ICNY+++I + SRC +FRF PL + +R+ Y+ +E
Sbjct: 144 IEAYSKVTRFILICNYVTRIIEPLASRCAKFRFQPLPVESMKARIKYIAHEEHCQFEEGK 203
Query: 61 KKAIID----LSDGDMRKVLNILQSA 82
++ ++D LS GDMR+ + LQSA
Sbjct: 204 EEEVVDEILTLSQGDMRRAVTTLQSA 229
>gi|302308854|ref|NP_985969.2| AFR422Wp [Ashbya gossypii ATCC 10895]
gi|299790827|gb|AAS53793.2| AFR422Wp [Ashbya gossypii ATCC 10895]
Length = 349
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/154 (48%), Positives = 107/154 (69%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R ++ LPH+LFYGPPGTGKT+TILA ++L+ + + VLELNASD+RGI IVR+
Sbjct: 46 LKRTLESANLPHMLFYGPPGTGKTSTILALTKELFGPSLMKSRVLELNASDERGISIVRE 105
Query: 357 QIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + + YK+IILDEAD+MT DAQ+ALRR +E +++ RFC+
Sbjct: 106 KVKNFARLTVTNPTKEDLEQYPCPPYKIIILDEADSMTADAQSALRRTMETYSSVTRFCL 165
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF PLD+ + RL+
Sbjct: 166 ICNYVTRIIDPLASRCSKFRFKPLDNVNALGRLE 199
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 58/83 (69%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +++ RFC+ICNY+++I + SRC++FRF PLD+ + RL+ + +QE ++
Sbjct: 154 METYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNVNALGRLEQIAQQEALSYEAGA 213
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++ +++GD+RK + +LQ+AA
Sbjct: 214 LEKVLHIAEGDLRKAITLLQTAA 236
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LD++ S I+ ++ L+ +++ + L G + S ++A
Sbjct: 25 VEKYRPRKLDDVASQAHAITVLK--------RTLESANLPHMLFYGPPGTGKTSTILALT 76
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
F + K VLELNASD+RGI IVR+++ FA + + YK+IIL
Sbjct: 77 KELFGPSLMKSRVLELNASDERGISIVREKVKNFARLTVTNPTKEDLEQYPCPPYKIIIL 136
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 137 DEADSMTADAQSALRRTM 154
>gi|366988801|ref|XP_003674168.1| hypothetical protein NCAS_0A12300 [Naumovozyma castellii CBS 4309]
gi|342300031|emb|CCC67788.1| hypothetical protein NCAS_0A12300 [Naumovozyma castellii CBS 4309]
Length = 350
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 106/147 (72%), Gaps = 12/147 (8%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPH+LFYGPPGTGKT+TILA A++L+ + +LELNASD+RGI IVR+++ FA
Sbjct: 56 LPHMLFYGPPGTGKTSTILALAKELFGPELMKSRILELNASDERGISIVREKVKNFARL- 114
Query: 366 TMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
T+ K S YK+IILDEAD+MT+DAQ+ALRR +E ++ RFC+ICNY+++I
Sbjct: 115 TVSKPSKNDLENYPCPPYKIIILDEADSMTSDAQSALRRTMETYSGVTRFCLICNYVTRI 174
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF PLD++ + RL Y
Sbjct: 175 IDPLASRCSKFRFKPLDATNAIDRLRY 201
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 96/190 (50%), Gaps = 31/190 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF PLD++ + RL YV +E V+ D
Sbjct: 155 METYSGVTRFCLICNYVTRIIDPLASRCSKFRFKPLDATNAIDRLRYVATEESVSYEDDV 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAA---------TAHADEVNE------DTIFTLLVSRVEK 105
K I+D+S GD+R+ + +LQSAA + V E D I ++V +V
Sbjct: 215 LKTILDISAGDLRRAITLLQSAAKRIQYTGAENVTSQNVKELAGVVPDDILKMIVEKVSN 274
Query: 106 YRPSTLDELVS----------------HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGT 149
+ + E V+ H IS E + ++ + + D + +L+ GT
Sbjct: 275 KNVNDIIEYVNEFTKSGWSGAAVIDQLHDYYISNDEYDTAFKNNVSMILFDTDAKLSNGT 334
Query: 150 SEKIQLSALI 159
+E +QL L+
Sbjct: 335 NEHLQLLNLL 344
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 77/139 (55%), Gaps = 24/139 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LD++ + ++ ++ L+ +++ + L G + S ++A
Sbjct: 26 VEKYRPKQLDDIAAQGHAVTVLK--------KTLQSANLPHMLFYGPPGTGKTSTILALA 77
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----------YKLII 207
F K +LELNASD+RGI IVR+++ FA T+ K S YK+II
Sbjct: 78 KELFGPELMKSRILELNASDERGISIVREKVKNFARL-TVSKPSKNDLENYPCPPYKIII 136
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEAD+MT+DAQ+ALRR +
Sbjct: 137 LDEADSMTSDAQSALRRTM 155
>gi|19115452|ref|NP_594540.1| DNA replication factor C complex subunit Rfc2 [Schizosaccharomyces
pombe 972h-]
gi|1350581|sp|Q09843.1|RFC2_SCHPO RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2; AltName: Full=Activator 1 41 kDa subunit
gi|1039340|emb|CAA91237.1| DNA replication factor C complex subunit Rfc2 [Schizosaccharomyces
pombe]
Length = 340
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 103/144 (71%), Gaps = 6/144 (4%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS 363
N LPH+LFYG PGTGKT+TILA +R+L+ + VLELNASD+RGI I+R+++ FA
Sbjct: 50 NNLPHMLFYGSPGTGKTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAK 109
Query: 364 TKTMHK------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
T +K +K+IILDEAD+MT DAQ ALRR +E + RFC+ICNY+++I
Sbjct: 110 TTVTNKVDGYPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDP 169
Query: 418 IQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC+++RF PLD+ ++ RL++
Sbjct: 170 LSSRCSKYRFKPLDNENMVKRLEF 193
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 28/191 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RFC+ICNY+++I + SRC+++RF PLD+ ++ RL+++ + V++ P
Sbjct: 147 MESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIAADQAVSMEPGV 206
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA------DEVNE--------------DTIFTLLV 100
A+++ S GDMRK + LQSAA H V E DT +T V
Sbjct: 207 VNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEELAGAVPYNIIRSLLDTAYTKNV 266
Query: 101 SRVEKYRPSTLDELVSHQDIISTIE---IPESMLVDLV-----LKMSDIEYRLAAGTSEK 152
S +E E S I+S + + E L V +K+S+++ RL G E
Sbjct: 267 SNIETLSRDVAAEGYSTGIILSQLHDVLLKEETLSSPVKYKIFMKLSEVDKRLNDGADET 326
Query: 153 IQLSALIAAFN 163
+QL L+++ +
Sbjct: 327 LQLLDLLSSIS 337
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 78/134 (58%), Gaps = 18/134 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VE YRP TLD++ S + ST+++ + L+ +++ + L G+ + S ++A
Sbjct: 22 VELYRPKTLDQVSSQE---STVQVLKKTLLS-----NNLPHMLFYGSPGTGKTSTILALS 73
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK------SSYKLIILDEAD 212
F K VLELNASD+RGI I+R+++ FA T +K +K+IILDEAD
Sbjct: 74 RELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTNKVDGYPCPPFKIIILDEAD 133
Query: 213 AMTNDAQNALRRKL 226
+MT DAQ ALRR +
Sbjct: 134 SMTQDAQAALRRTM 147
>gi|352683023|ref|YP_004893547.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275822|emb|CCC82469.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 328
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 100/146 (68%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ FI +PHLLFYGPPGTGKTTT L AR+LY + ++ LELNASD+RGI ++R
Sbjct: 29 RLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYGE-RWRENTLELNASDERGINVIR 87
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + +KL++LDEAD MT+DAQ ALRRI+E + RF ++ NY+S+I
Sbjct: 88 ERVKEFARTAPAGGAPFKLVVLDEADNMTSDAQQALRRIMEMYAATTRFVLLANYVSRII 147
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
I SRC FRF P+ L+ RL Y
Sbjct: 148 DPILSRCAVFRFPPMPKPLMAQRLQY 173
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 28/186 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF ++ NY+S+I I SRC FRF P+ L+ RL Y+ QE++ +T DG
Sbjct: 127 MEMYAATTRFVLLANYVSRIIDPILSRCAVFRFPPMPKPLMAQRLQYIASQERIKLTEDG 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDT---------------IFTLLVSR-VE 104
AI ++S GDMR+ +N+LQ AA A A V++++ IF L S VE
Sbjct: 187 IDAIYEISQGDMRRAINLLQMAA-ASAGVVDKESVAAVASAAKPSEILEIFNLAFSGDVE 245
Query: 105 KYRP-----------STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
K R + +D L + Q + ++I E + ++D++ RL G+ E++
Sbjct: 246 KARERLRDLMYMRGIAGIDILKALQRELPRLQIDEETKAAVAELLADVDLRLVEGSDEEL 305
Query: 154 QLSALI 159
QL+ ++
Sbjct: 306 QLTYML 311
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 103/235 (43%), Gaps = 63/235 (26%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP + E+V ++I ++ L + + M + + GT + L
Sbjct: 10 EKYRPKSFAEIVDLEEI-------KARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARE 62
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
R + LELNASD+RGI ++R+++ +FA T + +KL++LDEAD MT+DAQ A
Sbjct: 63 LYGERWRENTLELNASDERGINVIRERVKEFARTAPAGGAPFKLVVLDEADNMTSDAQQA 122
Query: 222 LRR-----------------------------------------------------KLPV 228
LRR ++ +
Sbjct: 123 LRRIMEMYAATTRFVLLANYVSRIIDPILSRCAVFRFPPMPKPLMAQRLQYIASQERIKL 182
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
T DG AI ++S GDMR+ +N+LQ AA A A V++++V +EI I
Sbjct: 183 TEDGIDAIYEISQGDMRRAINLLQMAA-ASAGVVDKESVAAVASAAKPSEILEIF 236
>gi|145590269|ref|YP_001152271.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514158|sp|A4WGV2.1|RFCS1_PYRAR RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|145282037|gb|ABP49619.1| Replication factor C [Pyrobaculum arsenaticum DSM 13514]
Length = 329
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 102/146 (69%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ +PHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGI ++R
Sbjct: 27 RLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGINVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S+I
Sbjct: 86 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYVSRII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
I SRC FRF P+ SL+ RL +
Sbjct: 146 DPIISRCAVFRFSPMPRSLMAERLRH 171
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP + DE+V +++ ++ L + V M + + GT + L
Sbjct: 8 EKYRPRSFDEVVDLEEV-------KARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARE 60
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ A
Sbjct: 61 LYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQA 120
Query: 222 LRR 224
LRR
Sbjct: 121 LRR 123
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S+I I SRC FRF P+ SL+ RL ++ + E + + D
Sbjct: 125 MEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRHIAKSEGIELRDDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQ-SAATAHADEVNEDTIFTLLVSRVEKYRPSTLDEL 114
I ++S+GDMRK +N+LQ +AAT+ + N T ++ RP+ + EL
Sbjct: 185 IDLIYEVSEGDMRKAINLLQVAAATSKVVDANAVASATTMI------RPADVVEL 233
>gi|296224812|ref|XP_002758207.1| PREDICTED: replication factor C subunit 4 [Callithrix jacchus]
Length = 363
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 140/245 (57%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL + +++ + I Y +K+ E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAERENVKISDEGIAYLVKVSEGDLRKA 241
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR- 523
+ L + L EI E ++ D+ AG ++ ++AA S
Sbjct: 242 ITF---LQSATRLTGGKEITEKVITDI------------AGVIPAEKIDGVLAACQSGSF 286
Query: 524 DKLEA 528
DKLEA
Sbjct: 287 DKLEA 291
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + E+E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAERENVKISDEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNE---------------DTIFTLLVS--- 101
++ +S+GD+RK + LQSA E+ E D + S
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVLAACQSGSF 286
Query: 102 -RVEKYRPSTLDE------LVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
++E +DE LVS D++ +P+ + K+++ + LA G E +
Sbjct: 287 DKLEAVVKDLIDEGHAATQLVSQLHDVVVENNLPDKQKSIITEKLAEADKCLADGADEHL 346
Query: 154 QLSALIA 160
QL +L A
Sbjct: 347 QLISLCA 353
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 114/271 (42%), Gaps = 74/271 (27%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL---------------------PVTP----------------- 230
DEAD+MT+ AQ ALRR + P+T
Sbjct: 150 DEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQ 209
Query: 231 ---------------DGKKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVGYP 274
+G ++ +S+GD+RK + LQSA E+ E + + G
Sbjct: 210 RLLDIAERENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVI 269
Query: 275 TKTEITNILRWLLNESMD-LCYKINRFIDEN 304
+I +L + S D L + IDE
Sbjct: 270 PAEKIDGVLAACQSGSFDKLEAVVKDLIDEG 300
>gi|50552766|ref|XP_503793.1| YALI0E10747p [Yarrowia lipolytica]
gi|49649662|emb|CAG79384.1| YALI0E10747p [Yarrowia lipolytica CLIB122]
Length = 378
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 104/155 (67%), Gaps = 10/155 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + LPH+LFYGPPGTGKT+T+LA A++LY VLELNASD+RGI IVRD
Sbjct: 50 LKRTLGSANLPHMLFYGPPGTGKTSTVLALAKELYGPELMKDRVLELNASDERGIAIVRD 109
Query: 357 QIFQFASTKTMHKS----------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
I FA+ K + +K+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 110 SIKNFAAQKVVAPKDHIAEKYPCPPFKIIILDEADSMTTDAQSALRRTMETYSAQTRFCL 169
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ICNY+++I + SRC++FRF LD + ++RL +
Sbjct: 170 ICNYVTRIIDPLASRCSKFRFRLLDGNDALARLRH 204
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 75/138 (54%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +LD+ VS QD T+ + L +++ + L G + S ++A
Sbjct: 29 VEKYRPKSLDD-VSSQDHAVTV-------LKRTLGSANLPHMLFYGPPGTGKTSTVLALA 80
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS----------SYKLIIL 208
+ K VLELNASD+RGI IVRD I FA+ K + +K+IIL
Sbjct: 81 KELYGPELMKDRVLELNASDERGIAIVRDSIKNFAAQKVVAPKDHIAEKYPCPPFKIIIL 140
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 141 DEADSMTTDAQSALRRTM 158
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 68/106 (64%), Gaps = 4/106 (3%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD + ++RL +V + E+++V
Sbjct: 158 METYSAQTRFCLICNYVTRIIDPLASRCSKFRFRLLDGNDALARLRHVSDAEQLSVEDGV 217
Query: 61 KKAIIDLSDGDMRKVLNILQS----AATAHADEVNEDTIFTLLVSR 102
+ I+++++GD+R+ + ILQS + + A + +ED T+ +R
Sbjct: 218 LEKILEVANGDLRRAITILQSCSRLSGESSAAQNDEDGDATMAETR 263
>gi|440891701|gb|ELR45251.1| Replication factor C subunit 4 [Bos grunniens mutus]
Length = 364
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 137/245 (55%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL D + + N I Y +++ E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRKA 241
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR- 523
+ L + L E+ E ++ D+ AG + + AA S
Sbjct: 242 ITF---LQSATRLTGGKEVTEKVITDI------------AGVVPAKTIDGVFAACQSGSF 286
Query: 524 DKLEA 528
DKLEA
Sbjct: 287 DKLEA 291
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA EV E I
Sbjct: 227 IAYLVQVSEGDLRKAITFLQSATRLTGGKEVTEKVI 262
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 105/244 (43%), Gaps = 74/244 (30%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL---------------------PVTP----------------- 230
DEAD+MT+ AQ ALRR + P+T
Sbjct: 150 DEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQ 209
Query: 231 ---------------DGKKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVG-Y 273
+G ++ +S+GD+RK + LQSA EV E + + G
Sbjct: 210 RLLDIADKEHVKISNEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGVV 269
Query: 274 PTKT 277
P KT
Sbjct: 270 PAKT 273
>gi|261205028|ref|XP_002627251.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
SLH14081]
gi|239592310|gb|EEQ74891.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
SLH14081]
gi|327348452|gb|EGE77309.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
ATCC 18188]
Length = 389
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 107/157 (68%), Gaps = 13/157 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A+ L+ + + +LELNASD+RGI IVR+
Sbjct: 57 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPQLYRSRILELNASDERGISIVRE 116
Query: 357 QIFQFASTKTMHKSS-------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+I FA + H + +K+IILDEAD+MT DAQ+ALRR +E+++ R
Sbjct: 117 KIKDFARMQLSHPPASDSAYRETYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITR 176
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
FC++CNY+++I + SRC++FRF LD S SRL+
Sbjct: 177 FCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRLE 213
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 25/147 (17%)
Query: 97 TLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
T L VEKYRP TLD++ S + ++ ++ L+ S++ + L G + S
Sbjct: 30 TRLQPWVEKYRPKTLDDVASQEHTVTVLQ--------RTLQASNLPHMLFYGPPGTGKTS 81
Query: 157 ALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------- 202
++A F + +LELNASD+RGI IVR++I FA + H +
Sbjct: 82 TILALAKSLFGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPASDSAYRETYP 141
Query: 203 ---YKLIILDEADAMTNDAQNALRRKL 226
+K+IILDEAD+MT DAQ+ALRR +
Sbjct: 142 CPPFKIIILDEADSMTQDAQSALRRTM 168
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 54/83 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF LD S SRL+ + EK+ +
Sbjct: 168 MERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRLEKIARVEKLKLADGC 227
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ +I S+GD+R+ + LQSAA
Sbjct: 228 VETLIRCSEGDLRRAITYLQSAA 250
>gi|396080875|gb|AFN82495.1| DNA replication factor C small subunit [Encephalitozoon romaleae
SJ-2008]
Length = 308
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/284 (36%), Positives = 148/284 (52%), Gaps = 67/284 (23%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
++ ++P++LFYGPPGTGKTT+I A AR L + VLELNASD+RGI VR+ I
Sbjct: 30 ILEAGKIPNMLFYGPPGTGKTTSIRAIARSLP-----RSCVLELNASDERGIATVRETIK 84
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
FAST + KL+ILDEAD M+ DAQNALRRIIE F+ N RFC+I N+ KI P I
Sbjct: 85 DFAST---YSKMMKLVILDEADMMSRDAQNALRRIIEDFSANTRFCLIANHSRKIIPPIL 141
Query: 420 SRCTRFRFGPLDS------------------------------------------SLIMS 437
SRCT+FRFGP++S SL +
Sbjct: 142 SRCTKFRFGPIESTESRIKEICRKEGIKYTEDGIAAVSKVSEGDMRKAVNDVQGISLSLG 201
Query: 438 RLDYDDISFFNIIIWYIKIQEIKIEKG-LALTDILTEISLLVHRLEIPESMLVD------ 490
+D ++ FN I +E+ ++ G +++ ++ I L + I L+D
Sbjct: 202 LIDERNVHKFNGIAPAQIYEEVFMDLGNMSMVELRARIEDLRYEYGIDCDALIDNLGGIA 261
Query: 491 ----------LVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
++ ++SDIE R + G +EK+QL A+I+ F RD
Sbjct: 262 RKSKMRNKTKILKELSDIERRRSIGCNEKLQLDAVISVFILNRD 305
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE F+ N RFC+I N+ KI P I SRCT+FRFGP++S+ SR+ + +E + T DG
Sbjct: 117 IEDFSANTRFCLIANHSRKIIPPILSRCTKFRFGPIEST--ESRIKEICRKEGIKYTEDG 174
Query: 61 KKAIIDLSDGDMRKVLNILQ--SAATAHADEVN-------------EDTIFTL------- 98
A+ +S+GDMRK +N +Q S + DE N E+ L
Sbjct: 175 IAAVSKVSEGDMRKAVNDVQGISLSLGLIDERNVHKFNGIAPAQIYEEVFMDLGNMSMVE 234
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIEIPESML--VDLVLKMSDIEYRLAAGTSEKIQLS 156
L +R+E R + + D + I M ++ ++SDIE R + G +EK+QL
Sbjct: 235 LRARIEDLRYEYGIDCDALIDNLGGIARKSKMRNKTKILKELSDIERRRSIGCNEKLQLD 294
Query: 157 ALIAAFNSARD 167
A+I+ F RD
Sbjct: 295 AVISVFILNRD 305
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 75/121 (61%), Gaps = 12/121 (9%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP TL E+V ++++I++++ S+L K+ ++ + GT + + A+ +
Sbjct: 7 EKYRPGTLLEMVGNKEVIASLQ---SILE--AGKIPNMLFYGPPGTGKTTSIRAIARSLP 61
Query: 164 SARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALR 223
+ VLELNASD+RGI VR+ I FAST + KL+ILDEAD M+ DAQNALR
Sbjct: 62 RS----CVLELNASDERGIATVRETIKDFAST---YSKMMKLVILDEADMMSRDAQNALR 114
Query: 224 R 224
R
Sbjct: 115 R 115
>gi|348582722|ref|XP_003477125.1| PREDICTED: replication factor C subunit 4-like [Cavia porcellus]
Length = 363
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 139/245 (56%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F + VLELNASD+RGI +VR+
Sbjct: 61 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLFRSRVLELNASDERGIQVVRE 120
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 121 KVKNFAQLAVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKATRFCLICN 180
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL + +++ N I Y +K+ E + K
Sbjct: 181 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISNEGIEYLVKVSEGDLRKA 240
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR- 523
+ L + L E+ E ++ D+ AG + + AA S
Sbjct: 241 ITF---LQSATRLTGGKEVMEKVITDI------------AGVIPAETIGGIFAACKSGSF 285
Query: 524 DKLEA 528
DKLEA
Sbjct: 286 DKLEA 290
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 55/82 (67%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + E+E V ++ +G
Sbjct: 166 MEKESKATRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISNEG 225
Query: 61 KKAIIDLSDGDMRKVLNILQSA 82
+ ++ +S+GD+RK + LQSA
Sbjct: 226 IEYLVKVSEGDLRKAITFLQSA 247
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 19/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++AA
Sbjct: 40 VEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTILAAA 91
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIILDEA 211
F + VLELNASD+RGI +VR+++ FA S +K++ILDEA
Sbjct: 92 RELFGPDLFRSRVLELNASDERGIQVVREKVKNFAQLAVSGSRSDGKPCPPFKIVILDEA 151
Query: 212 DAMTNDAQNALRRKL 226
D+MT+ AQ ALRR +
Sbjct: 152 DSMTSAAQAALRRTM 166
>gi|239611536|gb|EEQ88523.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
ER-3]
Length = 389
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 107/157 (68%), Gaps = 13/157 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A+ L+ + + +LELNASD+RGI IVR+
Sbjct: 57 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPQLYRSRILELNASDERGISIVRE 116
Query: 357 QIFQFASTKTMHKSS-------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+I FA + H + +K+IILDEAD+MT DAQ+ALRR +E+++ R
Sbjct: 117 KIKDFARMQLSHPPASDSAYRETYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITR 176
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
FC++CNY+++I + SRC++FRF LD S SRL+
Sbjct: 177 FCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRLE 213
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 25/147 (17%)
Query: 97 TLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
T L VEKYRP TLD++ S + ++ ++ L+ S++ + L G + S
Sbjct: 30 TRLQPWVEKYRPKTLDDVASQEHTVTVLQ--------RTLQASNLPHMLFYGPPGTGKTS 81
Query: 157 ALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------- 202
++A F + +LELNASD+RGI IVR++I FA + H +
Sbjct: 82 TILALAKSLFGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPASDSAYRETYP 141
Query: 203 ---YKLIILDEADAMTNDAQNALRRKL 226
+K+IILDEAD+MT DAQ+ALRR +
Sbjct: 142 CPPFKIIILDEADSMTQDAQSALRRTM 168
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 54/83 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF LD S SRL+ + EK+ +
Sbjct: 168 MERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRLEKIARVEKLKLADGC 227
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ +I S+GD+R+ + LQSAA
Sbjct: 228 VETLIRCSEGDLRRAITYLQSAA 250
>gi|119873156|ref|YP_931163.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415671|sp|A1RV38.1|RFCS2_PYRIL RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|119674564|gb|ABL88820.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 320
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 100/146 (68%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ +PHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGI ++R
Sbjct: 27 RLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGINVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S I
Sbjct: 86 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYISGII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSR RF PL ++SRL Y
Sbjct: 146 EPIQSRVVMIRFNPLPKEAVISRLRY 171
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 67/243 (27%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP + DE+V +++ +S L + V M + + GT + L
Sbjct: 8 EKYRPRSFDEVVDLEEV-------KSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARE 60
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ A
Sbjct: 61 LYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQA 120
Query: 222 LRR-----------------------------------KLP------------------V 228
LRR LP +
Sbjct: 121 LRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENEGVKI 180
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
+ D + I + + GDMRK +N LQ AA A E+ ED V ++G + +LR L
Sbjct: 181 SDDALETIYEFTQGDMRKAINALQIAA-ATEKEITEDVVARALGMVS----PRLLRETLQ 235
Query: 289 ESM 291
E++
Sbjct: 236 EAL 238
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S I IQSR RF PL ++SRL Y+ E E V ++ D
Sbjct: 125 MEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENEGVKISDDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
+ I + + GDMRK +N LQ AA A E+ ED +
Sbjct: 185 LETIYEFTQGDMRKAINALQIAA-ATEKEITEDVV 218
>gi|242822833|ref|XP_002487968.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
stipitatus ATCC 10500]
gi|218712889|gb|EED12314.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
stipitatus ATCC 10500]
Length = 393
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/149 (48%), Positives = 103/149 (69%), Gaps = 13/149 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA ++ L+ A + +LELNASD+RGI IVR+
Sbjct: 63 LQRTLQASNLPHMLFYGPPGTGKTSTILALSKSLFGPALYRTRILELNASDERGINIVRE 122
Query: 357 QIFQFASTKTMHKSS-------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+I FA T+ H S +K+IILDEAD+MT DAQ+ALRR +E+++ R
Sbjct: 123 KIKDFARTQLSHPSGLDAAYKAKYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITR 182
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDS 432
FC++CNY+++I + SRC++FRF LD
Sbjct: 183 FCLVCNYVTRIIEPLASRCSKFRFKALDG 211
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 25/141 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +LD+ V+ QD + + + L+ S++ + L G + S ++A
Sbjct: 42 VEKYRPKSLDD-VAAQDHTTAV-------LQRTLQASNLPHMLFYGPPGTGKTSTILALS 93
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------------YKL 205
F A + +LELNASD+RGI IVR++I FA T+ H S +K+
Sbjct: 94 KSLFGPALYRTRILELNASDERGINIVREKIKDFARTQLSHPSGLDAAYKAKYPCPPFKI 153
Query: 206 IILDEADAMTNDAQNALRRKL 226
IILDEAD+MT DAQ+ALRR +
Sbjct: 154 IILDEADSMTQDAQSALRRTM 174
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 51/83 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF LD R++ + + E + +
Sbjct: 174 MEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDGVSAGDRINEIAQAEGLTLDDGV 233
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+I S+GD+R+ + LQSAA
Sbjct: 234 VDTLIRCSEGDLRRAITYLQSAA 256
>gi|194222681|ref|XP_001498117.2| PREDICTED: replication factor C subunit 4 [Equus caballus]
Length = 364
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 137/245 (55%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL + + N I Y +K+ E + K
Sbjct: 182 YISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAGKEHVKISNEGIAYLVKVSEGDLRKA 241
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR- 523
+ L + L E+ E ++ D+ AG + L+AA S
Sbjct: 242 ITF---LQSATRLTGGKEVTEKVITDI------------AGVIPAETIDGLLAACQSGSF 286
Query: 524 DKLEA 528
DKLEA
Sbjct: 287 DKLEA 291
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 94/188 (50%), Gaps = 28/188 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + +E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAGKEHVKISNEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNE------------DTIFTLLVS------ 101
++ +S+GD+RK + LQSA EV E +TI LL +
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGVIPAETIDGLLAACQSGSF 286
Query: 102 -RVEKYRPSTLDE------LVS--HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
++E + +DE LV+ H I+ + + + K+++++ LA G E
Sbjct: 287 DKLEAAVKNLIDEGHAATQLVNQLHDVIVENDNLSDKQKSIITEKLAEVDKCLADGADEH 346
Query: 153 IQLSALIA 160
+QL +L A
Sbjct: 347 LQLMSLCA 354
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 113/271 (41%), Gaps = 74/271 (27%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL---------------------PVTP----------------- 230
DEAD+MT+ AQ ALRR + P+T
Sbjct: 150 DEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQ 209
Query: 231 ---------------DGKKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVGYP 274
+G ++ +S+GD+RK + LQSA EV E + + G
Sbjct: 210 RLLDIAGKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGVI 269
Query: 275 TKTEITNILRWLLNESMD-LCYKINRFIDEN 304
I +L + S D L + IDE
Sbjct: 270 PAETIDGLLAACQSGSFDKLEAAVKNLIDEG 300
>gi|426217728|ref|XP_004003104.1| PREDICTED: replication factor C subunit 4 isoform 2 [Ovis aries]
Length = 337
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/207 (41%), Positives = 125/207 (60%), Gaps = 15/207 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL D + + N I Y +K+ E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKA 241
Query: 465 LALTDILTEISLLVHRLEIPESMLVDL 491
+ L + L E+ E ++ D+
Sbjct: 242 ITF---LQSATRLTGGKEVTEKVITDI 265
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 89/163 (54%), Gaps = 5/163 (3%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTIFTLLVSRVEKYRPSTLDELVS--H 117
++ +S+GD+RK + LQSA EV E I + + + +T +LV+ H
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGDLINEGHAAT--QLVNQLH 284
Query: 118 QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
++ + + + K+++++ LA G E +QL +L A
Sbjct: 285 DVVVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCA 327
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 150 DEADSMTSAAQAALRRTM 167
>gi|240104119|ref|YP_002960428.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
gi|239911673|gb|ACS34564.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
Length = 333
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/149 (50%), Positives = 102/149 (68%), Gaps = 1/149 (0%)
Query: 293 LCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIG 352
+ ++ + +PHLLF GPPGTGKT+ LA AR+L+ + + LELNASD+RGI
Sbjct: 36 IVKRLKHYAKTGSMPHLLFAGPPGTGKTSAALALARELFGE-NWRHNFLELNASDERGIN 94
Query: 353 IVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
++R+++ +FA TK + +S+K+I LDEADA+T DAQ ALRR +E F+ NVRF + CNY S
Sbjct: 95 VIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSS 154
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
KI IQSRC FRF PL+ I R+ Y
Sbjct: 155 KIIEPIQSRCAIFRFRPLNDEDIAKRIRY 183
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 106/196 (54%), Gaps = 30/196 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ NVRF + CNY SKI IQSRC FRF PL+ I R+ Y+ EQE + +T +G
Sbjct: 137 MEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDEDIAKRIRYIAEQEGLELTEEG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRV----------------- 103
+AI+ +++GD+R+ +N+LQ+AA A ++ ++ +F L+ SR
Sbjct: 197 LQAILYVAEGDLRRAINVLQAAA-ALDKKITDENVF-LVASRARPEDVREMMTLALEGNF 254
Query: 104 ----EKYRPSTLDELVSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+K R L + +S +D+ + + IPE V L K+ + +RL G +E
Sbjct: 255 LKARDKLRDILLKQGLSGEDVLIQMHKEVFNLPIPEDKKVALADKIGEYNFRLVEGANEM 314
Query: 153 IQLSALIAAFNSARDK 168
IQL AL+A F DK
Sbjct: 315 IQLEALLAQFTIMGDK 330
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 108/229 (47%), Gaps = 72/229 (31%)
Query: 87 ADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLA 146
A+E+ E + L VEKYRP LD++V + I+ ++ K + + L
Sbjct: 5 AEEIRE--VKVLEKPWVEKYRPQRLDDIVGQEHIVKRLK--------HYAKTGSMPHLLF 54
Query: 147 AGTSEKIQLSALIAAFNSARD------KLEVLELNASDDRGIGIVRDQIFQFASTKTMHK 200
AG + SA +A AR+ + LELNASD+RGI ++R+++ +FA TK +
Sbjct: 55 AGPPGTGKTSAALAL---ARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGG 111
Query: 201 SSYKLIILDEADAMTNDAQNALRRKL---------------------PV----------- 228
+S+K+I LDEADA+T DAQ ALRR + P+
Sbjct: 112 ASFKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRP 171
Query: 229 ---------------------TPDGKKAIIDLSDGDMRKVLNILQSAAT 256
T +G +AI+ +++GD+R+ +N+LQ+AA
Sbjct: 172 LNDEDIAKRIRYIAEQEGLELTEEGLQAILYVAEGDLRRAINVLQAAAA 220
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
K+++I +++GL+ D+L ++ V L IPE V L K+ + +RL G +E IQL A
Sbjct: 260 KLRDILLKQGLSGEDVLIQMHKEVFNLPIPEDKKVALADKIGEYNFRLVEGANEMIQLEA 319
Query: 515 LIAAFNSARDK 525
L+A F DK
Sbjct: 320 LLAQFTIMGDK 330
>gi|300121957|emb|CBK22531.2| unnamed protein product [Blastocystis hominis]
Length = 314
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/151 (49%), Positives = 103/151 (68%), Gaps = 7/151 (4%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + E LPHLLFYGPPGTGKT+TILA +L+ + VLE+NASD+RGI ++R+
Sbjct: 14 LRRSVKEGNLPHLLFYGPPGTGKTSTILALTHELFG-PDLSDRVLEMNASDERGIDVIRE 72
Query: 357 QIFQFA------STKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
++ FA S YK+II+DEAD++T DAQ+ALRR++E+++ RFC ICNY
Sbjct: 73 KVILFARQSVRQSIPGYPSPPYKIIIMDEADSLTMDAQSALRRVMEQYSRVTRFCFICNY 132
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+SKI PA+ SRC RF FG L ++ RL +
Sbjct: 133 ISKIIPALSSRCARFEFGALPRGSVLERLSF 163
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC ICNY+SKI PA+ SRC RF FG L ++ RL ++ +EK+ + +
Sbjct: 117 MEQYSRVTRFCFICNYISKIIPALSSRCARFEFGALPRGSVLERLSFICGEEKIEIENEA 176
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH 86
I D S GD+R + +LQ+A T +
Sbjct: 177 LDFIFDHSRGDLRAGIQLLQNAETVN 202
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 6/60 (10%)
Query: 171 VLELNASDDRGIGIVRDQIFQFA------STKTMHKSSYKLIILDEADAMTNDAQNALRR 224
VLE+NASD+RGI ++R+++ FA S YK+II+DEAD++T DAQ+ALRR
Sbjct: 56 VLEMNASDERGIDVIREKVILFARQSVRQSIPGYPSPPYKIIIMDEADSLTMDAQSALRR 115
>gi|384486424|gb|EIE78604.1| hypothetical protein RO3G_03308 [Rhizopus delemar RA 99-880]
Length = 253
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/197 (44%), Positives = 124/197 (62%), Gaps = 28/197 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCI+CNY+SKI PAIQSRCTRFRF PL+ + SRL +++QEKV++T DG
Sbjct: 57 IEKYTKNVRFCIVCNYVSKIIPAIQSRCTRFRFAPLEMEQVESRLQTIVDQEKVDLTEDG 116
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-------VSRVEKY------- 106
KKA++ LS GDMR+ LNILQ+ A+ D ++E+ I+ + R+ ++
Sbjct: 117 KKALLQLSKGDMRRALNILQACHAAY-DRIDENAIYNCTGHPHPQDIERIFRWMMSEEFT 175
Query: 107 -RPSTLDEL-----VSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
S +D+L ++ QDI+S I E P ++ K+++IEYRL G SEK+
Sbjct: 176 TAYSNIDKLKRESGLALQDILSEIYYYARKVEFPAESRSFMLDKLAEIEYRLGEGGSEKV 235
Query: 154 QLSALIAAFNSARDKLE 170
QL AL+ F A DK++
Sbjct: 236 QLGALVGVFKLATDKIQ 252
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/101 (71%), Positives = 87/101 (86%)
Query: 339 MVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF 398
M+LELNASDDRGI +VR+QI FAST+ ++ S +KLIILDEAD+MTN AQ+ALRR+IEK+
Sbjct: 1 MILELNASDDRGIDVVREQIKNFASTRNIYSSGFKLIILDEADSMTNQAQSALRRVIEKY 60
Query: 399 TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
T NVRFCI+CNY+SKI PAIQSRCTRFRF PL+ + SRL
Sbjct: 61 TKNVRFCIVCNYVSKIIPAIQSRCTRFRFAPLEMEQVESRL 101
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 94/178 (52%), Gaps = 54/178 (30%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRR------ 224
+LELNASDDRGI +VR+QI FAST+ ++ S +KLIILDEAD+MTN AQ+ALRR
Sbjct: 2 ILELNASDDRGIDVVREQIKNFASTRNIYSSGFKLIILDEADSMTNQAQSALRRVIEKYT 61
Query: 225 -----------------------------------------------KLPVTPDGKKAII 237
K+ +T DGKKA++
Sbjct: 62 KNVRFCIVCNYVSKIIPAIQSRCTRFRFAPLEMEQVESRLQTIVDQEKVDLTEDGKKALL 121
Query: 238 DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCY 295
LS GDMR+ LNILQ+ A+ D ++E+ +YN G+P +I I RW+++E Y
Sbjct: 122 QLSKGDMRRALNILQACHAAY-DRIDENAIYNCTGHPHPQDIERIFRWMMSEEFTTAY 178
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y I ++K E GLAL DIL+EI ++E P ++ K+++IEYRL G SEK+QL
Sbjct: 178 YSNIDKLKRESGLALQDILSEIYYYARKVEFPAESRSFMLDKLAEIEYRLGEGGSEKVQL 237
Query: 513 SALIAAFNSARDKLE 527
AL+ F A DK++
Sbjct: 238 GALVGVFKLATDKIQ 252
>gi|126338206|ref|XP_001370165.1| PREDICTED: replication factor C subunit 4 [Monodelphis domestica]
Length = 366
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 137/232 (59%), Gaps = 20/232 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+LY F VLELNASD+RGI ++R+
Sbjct: 63 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELFRQRVLELNASDERGIQVIRE 122
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 123 KVKTFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 182
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL + +++ N I Y +K+ E + K
Sbjct: 183 YVSRIIEPLTSRCSKFRFKPLSDKIQHQRLLDISEKENVKINNEGIAYLVKVSEGDLRKA 242
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLV-----LKMSDIEYRLAAGTSEKIQ 511
+ L + L E+ E ++ ++ ++ I Y +G+ EK++
Sbjct: 243 ITF---LQSATRLTGGQEVTEKVITEIAGVVPTGTITGIFYACQSGSFEKLE 291
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + E+E V + +G
Sbjct: 168 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQHQRLLDISEKENVKINNEG 227
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA EV E I
Sbjct: 228 IAYLVKVSEGDLRKAITFLQSATRLTGGQEVTEKVI 263
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 106/250 (42%), Gaps = 75/250 (30%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 39 VPWVEKYRPKCVDEVAFQEEVVAVLK--------KSLEGADLPNLLFYGPPGTGKTSTIL 90
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA + + VLELNASD+RGI ++R+++ FA S +K++IL
Sbjct: 91 AAARELYGPELFRQRVLELNASDERGIQVIREKVKTFAQLTVSGSRSDGKPCPPFKIVIL 150
Query: 209 DEADAMTNDAQNALRRKL---------------------PVTP----------------- 230
DEAD+MT+ AQ ALRR + P+T
Sbjct: 151 DEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQHQ 210
Query: 231 ---------------DGKKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVG-Y 273
+G ++ +S+GD+RK + LQSA EV E + G
Sbjct: 211 RLLDISEKENVKINNEGIAYLVKVSEGDLRKAITFLQSATRLTGGQEVTEKVITEIAGVV 270
Query: 274 PTKTEITNIL 283
PT T IT I
Sbjct: 271 PTGT-ITGIF 279
>gi|355716186|gb|AES05531.1| replication factor C 4, 37kDa [Mustela putorius furo]
Length = 272
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/207 (42%), Positives = 125/207 (60%), Gaps = 15/207 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 58 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 117
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 118 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 177
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL D + + N I Y +K+ E + K
Sbjct: 178 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKA 237
Query: 465 LALTDILTEISLLVHRLEIPESMLVDL 491
+ L + L EI E ++ D+
Sbjct: 238 ITF---LQSATRLTGGKEITEKVITDI 261
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V ++ +G
Sbjct: 163 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEG 222
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA E+ E I
Sbjct: 223 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVI 258
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 19/141 (13%)
Query: 97 TLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
T V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S
Sbjct: 31 TKPVPWVEKYRPKCVDEVAFQEEVVAVLK--------KSLEGADLPNLLFYGPPGTGKTS 82
Query: 157 ALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKL 205
++AA F +L VLELNASD+RGI +VR+++ FA S +K+
Sbjct: 83 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKI 142
Query: 206 IILDEADAMTNDAQNALRRKL 226
+ILDEAD+MT+ AQ ALRR +
Sbjct: 143 VILDEADSMTSAAQAALRRTM 163
>gi|255944955|ref|XP_002563245.1| Pc20g07200 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587980|emb|CAP86049.1| Pc20g07200 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 388
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 106/156 (67%), Gaps = 13/156 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A+ L+ A + + +LELNASD+RGIGIVRD
Sbjct: 54 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVRD 113
Query: 357 QIFQFASTKTMHKSS-------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
++ FA + + +K+IILDEAD+MT DAQ+ALRR +E ++ R
Sbjct: 114 KVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDEADSMTQDAQSALRRTMETYSRITR 173
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
FC++CNY+++I + SRC++FRF LD+S R+
Sbjct: 174 FCLVCNYVTRIIEPLASRCSKFRFKMLDNSAAGERI 209
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 25/137 (18%)
Query: 107 RPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA----F 162
RP +LD+ V+ QD + + + L+ S++ + L G + S ++A F
Sbjct: 37 RPKSLDD-VAAQDHTTNV-------LQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLF 88
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------------YKLIILD 209
A + +LELNASD+RGIGIVRD++ FA + + +K+IILD
Sbjct: 89 GPALYRSRILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILD 148
Query: 210 EADAMTNDAQNALRRKL 226
EAD+MT DAQ+ALRR +
Sbjct: 149 EADSMTQDAQSALRRTM 165
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 51/83 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF LD+S R+ + EQE + +
Sbjct: 165 METYSRITRFCLVCNYVTRIIEPLASRCSKFRFKMLDNSAAGERIGNIAEQEGLQLEDGV 224
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+I DGD+R+ + LQSAA
Sbjct: 225 IDTLIRCGDGDLRRAITYLQSAA 247
>gi|384252312|gb|EIE25788.1| putative replication factor C 37 kDa subunit [Coccomyxa
subellipsoidea C-169]
Length = 329
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 103/156 (66%), Gaps = 6/156 (3%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ + + + ++ LPHLLFYGPPGTGKT+T LA AR+LY A V ELNASD+RGI
Sbjct: 25 EVVHTLQKALESANLPHLLFYGPPGTGKTSTALAMARQLYGPELAKARVKELNASDERGI 84
Query: 352 GIVRDQIFQFASTKTMHK------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
+VR++I FA+T +KL+ILDEADAMT DAQNALRR +E + RF
Sbjct: 85 NVVREKIKSFAATSVGQPVPGYPCPPFKLLILDEADAMTQDAQNALRRTMEAHSKVTRFI 144
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ICNY+S+I + SRC +FRF PL ++ +R+ +
Sbjct: 145 FICNYVSRIIEPLASRCAKFRFRPLHGGIMSARISH 180
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 75/134 (55%), Gaps = 18/134 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
V+KYRP +++E+ ++++ T++ L+ +++ + L G + S +A
Sbjct: 9 VDKYRPKSVNEVAHQEEVVHTLQ--------KALESANLPHLLFYGPPGTGKTSTALAMA 60
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK------SSYKLIILDEAD 212
+ K V ELNASD+RGI +VR++I FA+T +KL+ILDEAD
Sbjct: 61 RQLYGPELAKARVKELNASDERGINVVREKIKSFAATSVGQPVPGYPCPPFKLLILDEAD 120
Query: 213 AMTNDAQNALRRKL 226
AMT DAQNALRR +
Sbjct: 121 AMTQDAQNALRRTM 134
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF ICNY+S+I + SRC +FRF PL ++ +R+ ++ +E V +
Sbjct: 134 MEAHSKVTRFIFICNYVSRIIEPLASRCAKFRFRPLHGGIMSARISHICNEEGVQLQEGA 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF 96
+ + +S GD+RK + LQSA +V T+
Sbjct: 194 METLGKVSGGDLRKAITTLQSAVRLKGLQVEPQTLL 229
>gi|402861875|ref|XP_003895301.1| PREDICTED: replication factor C subunit 4, partial [Papio anubis]
Length = 298
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 139/245 (56%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL + +++ + I Y +K+ E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRKA 241
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR- 523
+ L + L EI E ++ D+ AG ++ + AA S
Sbjct: 242 ITF---LQSATRLTGGKEITERVITDI------------AGVIPAEKMDGVFAACQSGSF 286
Query: 524 DKLEA 528
DKLEA
Sbjct: 287 DKLEA 291
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + E+E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISDEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA E+ E I
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITERVI 262
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 83/156 (53%), Gaps = 22/156 (14%)
Query: 82 AATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDI 141
AATA + N+ V VEKYRP +DE+ +++++ ++ L+ +D+
Sbjct: 23 AATAGSSGENKKA---KPVPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADL 71
Query: 142 EYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKT 197
L G + S ++AA F +L VLELNASD+RGI +VR+++ FA
Sbjct: 72 PNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV 131
Query: 198 MHKSS-------YKLIILDEADAMTNDAQNALRRKL 226
S +K++ILDEAD+MT+ AQ ALRR +
Sbjct: 132 SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTM 167
>gi|340369406|ref|XP_003383239.1| PREDICTED: replication factor C subunit 4-like [Amphimedon
queenslandica]
Length = 363
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 105/145 (72%), Gaps = 7/145 (4%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS 363
++ P+LLFYGPPGTGKT+ ILA A +L+ + + + +LELNASDDRGI ++RD++ FA
Sbjct: 68 SDFPNLLFYGPPGTGKTSAILAIAHELFGRDLYKSRILELNASDDRGIQVIRDKVKSFAR 127
Query: 364 TKTMHK-------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
S+K++ILDEAD+MT AQ ALRR +EK +T+ RFC+ICNY+S+I
Sbjct: 128 HSASASRPDGKPCPSFKIVILDEADSMTQAAQAALRRTMEKESTSTRFCLICNYISRIIE 187
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF PL S+++ +RL+Y
Sbjct: 188 PLTSRCSKFRFKPLSSAILRTRLEY 212
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 58/89 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK +T+ RFC+ICNY+S+I + SRC++FRF PL S+++ +RL+Y+ +E V
Sbjct: 166 MEKESTSTRFCLICNYISRIIEPLTSRCSKFRFKPLSSAILRTRLEYICREENVKCNEKA 225
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE 89
II+ SDGDMRK + LQS DE
Sbjct: 226 IDRIIETSDGDMRKAITFLQSGYRLKGDE 254
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 112/271 (41%), Gaps = 74/271 (27%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +D++V +++S ++ L SD L G + SA++
Sbjct: 37 VPWVEKYRPKVVDDVVHQDEVVSVLK--------KTLTGSDFPNLLFYGPPGTGKTSAIL 88
Query: 160 AAFNS--ARD--KLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-------SSYKLIIL 208
A + RD K +LELNASDDRGI ++RD++ FA S+K++IL
Sbjct: 89 AIAHELFGRDLYKSRILELNASDDRGIQVIRDKVKSFARHSASASRPDGKPCPSFKIVIL 148
Query: 209 DEADAMTNDAQNALRRKL---------------------PVTPDGKK------------- 234
DEAD+MT AQ ALRR + P+T K
Sbjct: 149 DEADSMTQAAQAALRRTMEKESTSTRFCLICNYISRIIEPLTSRCSKFRFKPLSSAILRT 208
Query: 235 -------------------AIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTVYNSVGYP 274
II+ SDGDMRK + LQS D EV E + G
Sbjct: 209 RLEYICREENVKCNEKAIDRIIETSDGDMRKAITFLQSGYRLKGDEEVTEKDIMEIAGVV 268
Query: 275 TKTEITNILRWLLNESMD-LCYKINRFIDEN 304
++ I +L+ + S D L + F+ E
Sbjct: 269 PQSLIEGLLKTCSSNSYDQLETAVKNFVAEG 299
>gi|425784288|gb|EKV22076.1| Protein transport membrane glycoprotein Sec20, putative
[Penicillium digitatum Pd1]
Length = 780
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 106/156 (67%), Gaps = 13/156 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A+ L+ A + + +LELNASD+RGIGIVRD
Sbjct: 447 LRRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVRD 506
Query: 357 QIFQFASTKTMHKSS-------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
++ FA + + +K+IILDEAD+MT DAQ+ALRR +E ++ R
Sbjct: 507 KVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDEADSMTQDAQSALRRTMETYSRITR 566
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
FC++CNY+++I + SRC++FRF LD++ R+
Sbjct: 567 FCLVCNYVTRIIEPLASRCSKFRFKMLDNNAAGDRI 602
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 45/227 (19%)
Query: 35 PLDSSLIMSRLDYVIEQEKV------NVTPDGKKAIIDLSDGDMRKVLNI---------- 78
P+DS ++ ++ ++E EK NVTP+ + +L +++
Sbjct: 342 PIDSDRVIDKIGDMVEDEKQKSVDIDNVTPEERARQAELPRNAKKRMFEAGMEDPARAAA 401
Query: 79 --LQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVL 136
S++ A + ED+ T L VEKYRP TLD+ V+ QD + + + L
Sbjct: 402 AAASSSSKLKAGDNKEDS--TRLQPWVEKYRPKTLDD-VAAQDHTTKV-------LRRTL 451
Query: 137 KMSDIEYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQF 192
+ S++ + L G + S ++A F A + +LELNASD+RGIGIVRD++ F
Sbjct: 452 QASNLPHMLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVRDKVKNF 511
Query: 193 ASTKTMHKSS-------------YKLIILDEADAMTNDAQNALRRKL 226
A + + +K+IILDEAD+MT DAQ+ALRR +
Sbjct: 512 ARAQLSQPTGLDAAYRAQYPCPPFKIIILDEADSMTQDAQSALRRTM 558
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF LD++ R+ + QE + +
Sbjct: 558 METYSRITRFCLVCNYVTRIIEPLASRCSKFRFKMLDNNAAGDRISNIAAQEGLRLEDGV 617
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+I +GD+R+ + LQSAA
Sbjct: 618 VDTLIRCGEGDLRRAITYLQSAA 640
>gi|349605347|gb|AEQ00618.1| Replication factor C subunit 4-like protein, partial [Equus
caballus]
Length = 266
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 137/245 (55%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 34 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 93
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 94 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 153
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL + + N I Y +K+ E + K
Sbjct: 154 YISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAGKEHVKISNEGIAYLVKVSEGDLRKA 213
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR- 523
+ L + L E+ E ++ D+ AG + L+AA S
Sbjct: 214 ITF---LQSATRLTGGKEVTEKVITDI------------AGVIPAETIDGLLAACQSGSF 258
Query: 524 DKLEA 528
DKLEA
Sbjct: 259 DKLEA 263
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + +E V ++ +G
Sbjct: 139 MEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAGKEHVKISNEG 198
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA EV E I
Sbjct: 199 IAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVI 234
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 108/258 (41%), Gaps = 73/258 (28%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 10 VPWVEKYRPKCVDEVAFQEEVVAVLK--------KSLEGADLPNLLFYGPPGTGKTSTIL 61
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 62 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 121
Query: 209 DEADAMTNDAQNALRRKL---------------------PVTP----------------- 230
DEAD+MT+ AQ ALRR + P+T
Sbjct: 122 DEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQ 181
Query: 231 ---------------DGKKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVGYP 274
+G ++ +S+GD+RK + LQSA EV E + + G
Sbjct: 182 RLLDIAGKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGVI 241
Query: 275 TKTEITNILRWLLNESMD 292
I +L + S D
Sbjct: 242 PAETIDGLLAACQSGSFD 259
>gi|348688417|gb|EGZ28231.1| hypothetical protein PHYSODRAFT_551952 [Phytophthora sojae]
Length = 339
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 102/145 (70%), Gaps = 4/145 (2%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTK-AQFNAMVLELNASDDRGIGIVRDQIF 359
I +LPHLLFYGPPGTGKT+TI+A R+L+ + N LELNASDDRGI +VR+++
Sbjct: 45 IANGQLPHLLFYGPPGTGKTSTIVAVGRQLFGPDFRKNGRFLELNASDDRGIKVVREKVK 104
Query: 360 QFASTKTMHKSS---YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
FA S +K+I+LDEAD+MT DAQ+ALRR++E ++ RFC+ICNY+S+I
Sbjct: 105 SFAQGAISSASGLPPFKIIVLDEADSMTGDAQSALRRMMENYSKVTRFCLICNYVSRIIE 164
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC +FRF PL+ + SR+ +
Sbjct: 165 PVASRCAKFRFAPLERGSMASRVRF 189
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+S+I + SRC +FRF PL+ + SR+ ++ +E VNV
Sbjct: 143 MENYSKVTRFCLICNYVSRIIEPVASRCAKFRFAPLERGSMASRVRFIASEEHVNVPDPV 202
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-DEVNEDTIFTL 98
+++++ S+GD+RK +N LQSA DE+++D + +
Sbjct: 203 LESLLECSNGDLRKAINYLQSAKQLCGDDELSQDDVIAV 241
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 100/232 (43%), Gaps = 70/232 (30%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP +DE+ + +++T++ + + + L G + S ++A
Sbjct: 20 VEKYRPKNVDEISHQEHVVATLKTS--------IANGQLPHLLFYGPPGTGKTSTIVAVG 71
Query: 163 NSA-----RDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---YKLIILDEADAM 214
R LELNASDDRGI +VR+++ FA S +K+I+LDEAD+M
Sbjct: 72 RQLFGPDFRKNGRFLELNASDDRGIKVVREKVKSFAQGAISSASGLPPFKIIVLDEADSM 131
Query: 215 TNDAQNALRRKL---------------------PVT------------------------ 229
T DAQ+ALRR + PV
Sbjct: 132 TGDAQSALRRMMENYSKVTRFCLICNYVSRIIEPVASRCAKFRFAPLERGSMASRVRFIA 191
Query: 230 -------PDGK-KAIIDLSDGDMRKVLNILQSAATAHA-DEVNEDTVYNSVG 272
PD +++++ S+GD+RK +N LQSA DE+++D V G
Sbjct: 192 SEEHVNVPDPVLESLLECSNGDLRKAINYLQSAKQLCGDDELSQDDVIAVAG 243
>gi|388852328|emb|CCF53943.1| probable RFC2-DNA replication factor C, 41 KD subunit [Ustilago
hordei]
Length = 383
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 102/143 (71%), Gaps = 6/143 (4%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS 363
N LPH+LFYGPPGTGKT+TILA AR+L+ VLELNASD+RGI +VR++I FA
Sbjct: 60 NNLPHMLFYGPPGTGKTSTILALARQLFGPELVKTRVLELNASDERGITVVREKIKNFAK 119
Query: 364 TKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
+ +K+IILDEAD+MT DAQ+ALRRI+E+++ RFC++CNY+++I
Sbjct: 120 LAVTNPKEGFPCPPFKIIILDEADSMTQDAQSALRRIMEQYSRITRFCLVCNYVTRIIEP 179
Query: 418 IQSRCTRFRFGPLDSSLIMSRLD 440
+ SRC++FRF LD+ +RL+
Sbjct: 180 LASRCSKFRFRSLDTCSTKTRLE 202
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 18/132 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T+D++ + + ++ ++ L +++ + L G + S ++A
Sbjct: 32 VEKYRPKTIDDVAAQEHTVAVLK--------KTLMSNNLPHMLFYGPPGTGKTSTILALA 83
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------YKLIILDEAD 212
F K VLELNASD+RGI +VR++I FA + +K+IILDEAD
Sbjct: 84 RQLFGPELVKTRVLELNASDERGITVVREKIKNFAKLAVTNPKEGFPCPPFKIIILDEAD 143
Query: 213 AMTNDAQNALRR 224
+MT DAQ+ALRR
Sbjct: 144 SMTQDAQSALRR 155
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF LD+ +RL+ + E V+
Sbjct: 157 MEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFRSLDTCSTKTRLEMIAGAESVSFQDSS 216
Query: 61 K-KAIIDLSDGDMRKVLNILQSAATAHA 87
+I SDGD+R+ + LQSA+ H+
Sbjct: 217 VLDTLITTSDGDLRRAITYLQSASRLHS 244
>gi|425778430|gb|EKV16557.1| Protein transport membrane glycoprotein Sec20, putative
[Penicillium digitatum PHI26]
Length = 780
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 106/156 (67%), Gaps = 13/156 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A+ L+ A + + +LELNASD+RGIGIVRD
Sbjct: 447 LRRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVRD 506
Query: 357 QIFQFASTKTMHKSS-------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
++ FA + + +K+IILDEAD+MT DAQ+ALRR +E ++ R
Sbjct: 507 KVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDEADSMTQDAQSALRRTMETYSRITR 566
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
FC++CNY+++I + SRC++FRF LD++ R+
Sbjct: 567 FCLVCNYVTRIIEPLASRCSKFRFKMLDNNAAGDRI 602
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 45/227 (19%)
Query: 35 PLDSSLIMSRLDYVIEQEKV------NVTPDGKKAIIDLSDGDMRKVLNI---------- 78
P+DS ++ ++ ++E EK NVTP+ + +L +++
Sbjct: 342 PIDSDRVIDKIGDMVEDEKQKSVDIDNVTPEERARQAELPRNAKKRMFEAGMEDPARAAA 401
Query: 79 --LQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVL 136
S++ A + ED+ T L VEKYRP TLD+ V+ QD + + + L
Sbjct: 402 AAASSSSKLKAGDNKEDS--TRLQPWVEKYRPKTLDD-VAAQDHTTKV-------LRRTL 451
Query: 137 KMSDIEYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQF 192
+ S++ + L G + S ++A F A + +LELNASD+RGIGIVRD++ F
Sbjct: 452 QASNLPHMLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVRDKVKNF 511
Query: 193 ASTKTMHKSS-------------YKLIILDEADAMTNDAQNALRRKL 226
A + + +K+IILDEAD+MT DAQ+ALRR +
Sbjct: 512 ARAQLSQPTGLDAAYRAQYPCPPFKIIILDEADSMTQDAQSALRRTM 558
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF LD++ R+ + QE + +
Sbjct: 558 METYSRITRFCLVCNYVTRIIEPLASRCSKFRFKMLDNNAAGDRISNIAAQEGLRLEDGV 617
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+I +GD+R+ + LQSAA
Sbjct: 618 VDTLIRCGEGDLRRAITYLQSAA 640
>gi|337285093|ref|YP_004624567.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
gi|334901027|gb|AEH25295.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
Length = 326
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 101/146 (69%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++ +PHLLF GPPGTGKTT+ LA AR+L+ + + LELNASD+RGI ++R
Sbjct: 36 RLKHYVKTGSMPHLLFAGPPGTGKTTSALALARELFGE-NWRHNFLELNASDERGINVIR 94
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA TK + +S+K+I LDEADA+T DAQ ALRR +E F+ NVRF + NY S+I
Sbjct: 95 EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSANYSSRII 154
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSRC FRF PL + RL Y
Sbjct: 155 EPIQSRCAIFRFRPLSDEDVAKRLKY 180
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 101/190 (53%), Gaps = 30/190 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ NVRF + NY S+I IQSRC FRF PL + RL Y+ EQE + +T +G
Sbjct: 134 MEMFSNNVRFILSANYSSRIIEPIQSRCAIFRFRPLSDEDVAKRLKYIAEQEGLELTEEG 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRV----------------- 103
+AI+ +++GD+R+ +N+LQ+AA A ++ ++ +FT + SR
Sbjct: 194 LQAILYVAEGDLRRAINVLQAAA-ALDKKITDENVFT-VASRARPEDIREMMLLALEGNF 251
Query: 104 ----EKYRPSTLDELVSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
EK R L + +S +D+ + + I E V L K+ + +RL G +E
Sbjct: 252 LKAREKLREILLKQGLSGEDVLIQMHREVFNLPISEPKKVQLADKIGEYNFRLVEGANEM 311
Query: 153 IQLSALIAAF 162
IQL AL+A F
Sbjct: 312 IQLEALLAQF 321
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 105/226 (46%), Gaps = 66/226 (29%)
Query: 87 ADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLA 146
A+EV E + L VEKYRP LD++V + II ++ +K + + L
Sbjct: 2 AEEVRE--VKVLEKPWVEKYRPQRLDDIVGQEHIIKRLK--------HYVKTGSMPHLLF 51
Query: 147 AG---TSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSY 203
AG T + AL + LELNASD+RGI ++R+++ +FA TK + +S+
Sbjct: 52 AGPPGTGKTTSALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASF 111
Query: 204 KLIILDEADAMTNDAQNALRRKL---------------------PV-------------- 228
K+I LDEADA+T DAQ ALRR + P+
Sbjct: 112 KIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSANYSSRIIEPIQSRCAIFRFRPLSD 171
Query: 229 ------------------TPDGKKAIIDLSDGDMRKVLNILQSAAT 256
T +G +AI+ +++GD+R+ +N+LQ+AA
Sbjct: 172 EDVAKRLKYIAEQEGLELTEEGLQAILYVAEGDLRRAINVLQAAAA 217
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
K++EI +++GL+ D+L ++ V L I E V L K+ + +RL G +E IQL A
Sbjct: 257 KLREILLKQGLSGEDVLIQMHREVFNLPISEPKKVQLADKIGEYNFRLVEGANEMIQLEA 316
Query: 515 LIAAF 519
L+A F
Sbjct: 317 LLAQF 321
>gi|21703948|ref|NP_663455.1| replication factor C subunit 4 [Mus musculus]
gi|81916548|sp|Q99J62.1|RFC4_MOUSE RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|13097123|gb|AAH03335.1| Replication factor C (activator 1) 4 [Mus musculus]
gi|74147363|dbj|BAE27563.1| unnamed protein product [Mus musculus]
gi|148665244|gb|EDK97660.1| replication factor C (activator 1) 4 [Mus musculus]
Length = 364
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 138/245 (56%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL + +++ N I Y +KI E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKA 241
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR- 523
+ L + L E+ E ++ D+ AG + + A +S
Sbjct: 242 ITF---LQSATRLTGGKEVSEDVITDI------------AGVIPAATIDGIFTACHSGSF 286
Query: 524 DKLEA 528
DKLEA
Sbjct: 287 DKLEA 291
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 28/188 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + E+E V + +
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEE 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDT---------------IFTLLVS--- 101
++ +S+GD+RK + LQSA EV+ED IFT S
Sbjct: 227 IAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIFTACHSGSF 286
Query: 102 -RVEKYRPSTLDE------LVS--HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
++E + +DE LV+ H II + + + K+++++ LA G E
Sbjct: 287 DKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDKCLADGADEH 346
Query: 153 IQLSALIA 160
+QL +L A
Sbjct: 347 LQLMSLCA 354
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ ++++ + L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQDEVVAVLRKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 150 DEADSMTSAAQAALRRTM 167
>gi|225562412|gb|EEH10691.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 394
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 105/157 (66%), Gaps = 13/157 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A+ LY + + +LELNASD+RGI IVR+
Sbjct: 59 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLYGPQLYRSRILELNASDERGISIVRE 118
Query: 357 QIFQFASTKTMHK-------------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+I FA + H +K+IILDEAD+MT DAQ+ALRR +E+++ R
Sbjct: 119 KIKDFARMQLSHPPLSDSAYREKYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITR 178
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
FC++CNY+++I + SRC++FRF LD S RL+
Sbjct: 179 FCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGCRLE 215
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 78/147 (53%), Gaps = 25/147 (17%)
Query: 97 TLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
T L VEKYRP TLD++ S + ++ ++ L+ S++ + L G + S
Sbjct: 32 TRLQPWVEKYRPKTLDDVASQEHTVTVLQ--------RTLQASNLPHMLFYGPPGTGKTS 83
Query: 157 ALIAAFNSARD----KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS----------- 201
++A S + +LELNASD+RGI IVR++I FA + H
Sbjct: 84 TILALAKSLYGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPLSDSAYREKYP 143
Query: 202 --SYKLIILDEADAMTNDAQNALRRKL 226
+K+IILDEAD+MT DAQ+ALRR +
Sbjct: 144 CPPFKIIILDEADSMTQDAQSALRRTM 170
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF LD S RL+ + EK+ +
Sbjct: 170 MERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGCRLEEIARMEKLRLADGC 229
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ +I S+GD+R+ + LQSAA
Sbjct: 230 IRTLIRCSEGDLRRAITYLQSAA 252
>gi|351709587|gb|EHB12506.1| Replication factor C subunit 4 [Heterocephalus glaber]
Length = 364
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 139/245 (56%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F + VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRSRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLAVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+++I + SRC++FRF PL + RL + +++ N I Y +K+ E + K
Sbjct: 182 YVTRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISNEGIAYLVKVSEGDLRKA 241
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR- 523
+ L + L E+ E ++ D+ AG + + AA S
Sbjct: 242 ITF---LQSATRLTGGKEVMEKVITDI------------AGVIPAETIDGVFAACQSGSF 286
Query: 524 DKLEA 528
DKLEA
Sbjct: 287 DKLEA 291
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+++I + SRC++FRF PL + RL + E+E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVTRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISNEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSA 82
++ +S+GD+RK + LQSA
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSA 248
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F + VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRSRVLELNASDERGIQVVREKVKNFAQLAVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 150 DEADSMTSAAQAALRRTM 167
>gi|240281117|gb|EER44620.1| DNA replication factor C subunit Rfc2 [Ajellomyces capsulatus H143]
gi|325092385|gb|EGC45695.1| activator 1 41 kDa subunit [Ajellomyces capsulatus H88]
Length = 394
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 105/157 (66%), Gaps = 13/157 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A+ LY + + +LELNASD+RGI IVR+
Sbjct: 59 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLYGPQLYRSRILELNASDERGISIVRE 118
Query: 357 QIFQFASTKTMHK-------------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+I FA + H +K+IILDEAD+MT DAQ+ALRR +E+++ R
Sbjct: 119 KIKDFARMQLSHPPLSDSAYREKYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITR 178
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
FC++CNY+++I + SRC++FRF LD S RL+
Sbjct: 179 FCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGCRLE 215
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 78/147 (53%), Gaps = 25/147 (17%)
Query: 97 TLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
T L VEKYRP TLD++ S + ++ ++ L+ S++ + L G + S
Sbjct: 32 TRLQPWVEKYRPKTLDDVASQEHTVTVLQ--------RTLQASNLPHMLFYGPPGTGKTS 83
Query: 157 ALIAAFNSARD----KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS----------- 201
++A S + +LELNASD+RGI IVR++I FA + H
Sbjct: 84 TILALAKSLYGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPLSDSAYREKYP 143
Query: 202 --SYKLIILDEADAMTNDAQNALRRKL 226
+K+IILDEAD+MT DAQ+ALRR +
Sbjct: 144 CPPFKIIILDEADSMTQDAQSALRRTM 170
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF LD S RL+ + EK+ +
Sbjct: 170 MERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGCRLEEIARMEKLRLADGC 229
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ +I S+GD+R+ + LQSAA
Sbjct: 230 IRTLIRCSEGDLRRAITYLQSAA 252
>gi|336367142|gb|EGN95487.1| hypothetical protein SERLA73DRAFT_60040 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379860|gb|EGO21014.1| hypothetical protein SERLADRAFT_372826 [Serpula lacrymans var.
lacrymans S7.9]
Length = 372
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 99/146 (67%), Gaps = 11/146 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + LPH+LFYGPPGTGKT+TILA +R+L+ F VLELNASD+RGI IVR+
Sbjct: 46 LRKTLTSTNLPHMLFYGPPGTGKTSTILALSRQLFGPDNFRNRVLELNASDERGISIVRE 105
Query: 357 QIFQFAST-----------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
+I FA KT YK+IILDEAD+MT DAQ ALRRI+E + RFC
Sbjct: 106 KIKNFARQTPRAQMVASDGKTYPCPPYKIIILDEADSMTQDAQGALRRIMETYARITRFC 165
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLD 431
++CNY+++I + SRC++FRF PLD
Sbjct: 166 LVCNYVTRIIEPLASRCSKFRFTPLD 191
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 72/137 (52%), Gaps = 23/137 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T+D++ + + ++ + L +++ + L G + S ++A
Sbjct: 25 VEKYRPKTIDDVSAQEHTVAVLR--------KTLTSTNLPHMLFYGPPGTGKTSTILALS 76
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST-----------KTMHKSSYKLII 207
F + VLELNASD+RGI IVR++I FA KT YK+II
Sbjct: 77 RQLFGPDNFRNRVLELNASDERGISIVREKIKNFARQTPRAQMVASDGKTYPCPPYKIII 136
Query: 208 LDEADAMTNDAQNALRR 224
LDEAD+MT DAQ ALRR
Sbjct: 137 LDEADSMTQDAQGALRR 153
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 54/83 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RFC++CNY+++I + SRC++FRF PLDSS SRL + E V + PD
Sbjct: 155 METYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSSSTSSRLSQIATAEHVVLEPDV 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I+ S GD+R+ + LQSA+
Sbjct: 215 ISALINTSSGDLRRSITYLQSAS 237
>gi|307110220|gb|EFN58456.1| hypothetical protein CHLNCDRAFT_48527 [Chlorella variabilis]
Length = 293
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 99/147 (67%), Gaps = 6/147 (4%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
+ LPHLLFYGPPGTGKTT+ LA R+L+ A VLELNASD+RGIG+VRD+I
Sbjct: 32 LSSGNLPHLLFYGPPGTGKTTSALAIVRQLFGPELCKARVLELNASDERGIGVVRDKIKN 91
Query: 361 FASTKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
FA+ + +K+IILDEAD+MT DAQNALRR +E ++ RF ICNY+S+I
Sbjct: 92 FAANSVGQGVAGYPCPPFKVIILDEADSMTGDAQNALRRTMETYSRVTRFVFICNYVSRI 151
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC +FRF PL +I R+++
Sbjct: 152 IEPLASRCAKFRFKPLQGDVINERINH 178
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 75/134 (55%), Gaps = 18/134 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP ++ E+ ++++ T++ L ++ + L G + ++ +A
Sbjct: 7 VEKYRPRSIGEVAHQEEVVQTLQ--------HALSSGNLPHLLFYGPPGTGKTTSALAIV 58
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------YKLIILDEAD 212
F K VLELNASD+RGIG+VRD+I FA+ + +K+IILDEAD
Sbjct: 59 RQLFGPELCKARVLELNASDERGIGVVRDKIKNFAANSVGQGVAGYPCPPFKVIILDEAD 118
Query: 213 AMTNDAQNALRRKL 226
+MT DAQNALRR +
Sbjct: 119 SMTGDAQNALRRTM 132
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL +I R++++ G
Sbjct: 132 METYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQGDVINERINHIC----AGAAGGG 187
Query: 61 KKAIIDLSD 69
+ I+D+S
Sbjct: 188 CRHILDVSG 196
>gi|379005452|ref|YP_005261124.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375160905|gb|AFA40517.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 329
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 101/146 (69%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ +PHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGI ++R
Sbjct: 27 RLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGINVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S+I
Sbjct: 86 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYVSRII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
I SRC FRF P+ L+ RL +
Sbjct: 146 DPIISRCAVFRFSPMPRGLMAERLRH 171
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 96/216 (44%), Gaps = 63/216 (29%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP DE+V +++ ++ L + V M + + GT + L
Sbjct: 8 EKYRPRVFDEVVDLEEV-------KARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARE 60
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ A
Sbjct: 61 LYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQA 120
Query: 222 LRR--------------------------------KLPVTPDGKKA-------------- 235
LRR + P G A
Sbjct: 121 LRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRGLMAERLRHIAKSEGIEL 180
Query: 236 -------IIDLSDGDMRKVLNILQ-SAATAHADEVN 263
I ++S+GDMRK +N+LQ +AAT++ + N
Sbjct: 181 RDDAIDLIYEVSEGDMRKAINLLQVAAATSNVVDAN 216
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S+I I SRC FRF P+ L+ RL ++ + E + + D
Sbjct: 125 MEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRGLMAERLRHIAKSEGIELRDDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQ-SAATAHADEVNEDTIFTLLVSRVEKYRPSTLDEL 114
I ++S+GDMRK +N+LQ +AAT++ + N T ++ RP+ + EL
Sbjct: 185 IDLIYEVSEGDMRKAINLLQVAAATSNVVDANAVASATTMI------RPADVIEL 233
>gi|85118512|ref|XP_965460.1| activator 1 41 kDa subunit [Neurospora crassa OR74A]
gi|28927269|gb|EAA36224.1| activator 1 41 kDa subunit [Neurospora crassa OR74A]
Length = 387
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 105/154 (68%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR+
Sbjct: 56 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPELIKSRVLELNASDERGISIVRE 115
Query: 357 QIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + + S+ +KLIILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 116 KVKDFARMQLTNPSAAYKARYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCL 175
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF LD RL+
Sbjct: 176 ICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLE 209
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL ++ + I+ ++ L+ S++ + L G + S ++A
Sbjct: 35 VEKYRPKTLSDVTAQDHTITVLQ--------RTLQASNLPHMLFYGPPGTGKTSTILALA 86
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR+++ FA + + S+ +KLIIL
Sbjct: 87 KELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPPFKLIIL 146
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 147 DEADSMTQDAQSALRRTM 164
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD RL+ + + E V +
Sbjct: 164 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGA 223
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+RK + LQSAA
Sbjct: 224 VDALIKCSEGDLRKAITYLQSAA 246
>gi|355784873|gb|EHH65724.1| hypothetical protein EGM_02550 [Macaca fascicularis]
Length = 363
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 139/245 (56%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL + +++ + I Y +K+ E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRKA 241
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR- 523
+ L + L EI E ++ D+ AG ++ + AA S
Sbjct: 242 ITF---LQSATRLTGGKEITERVITDI------------AGVIPAEKIDGVFAACQSGSF 286
Query: 524 DKLEA 528
DKLEA
Sbjct: 287 DKLEA 291
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + E+E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISDEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNE---------------DTIFTLLVS--- 101
++ +S+GD+RK + LQSA E+ E D +F S
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITERVITDIAGVIPAEKIDGVFAACQSGSF 286
Query: 102 -RVEKYRPSTLDELVSHQDIISTIE--IPESMLVD-----LVLKMSDIEYRLAAGTSEKI 153
++E +DE + +S + + E+ L D + K+++++ LA G E +
Sbjct: 287 DKLEAVVKDLIDEGHAATQFVSQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHL 346
Query: 154 QLSALIA 160
QL +L A
Sbjct: 347 QLISLCA 353
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 150 DEADSMTSAAQAALRRTM 167
>gi|224060747|ref|XP_002196271.1| PREDICTED: replication factor C subunit 4 [Taeniopygia guttata]
Length = 362
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 130/208 (62%), Gaps = 15/208 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI ++R+
Sbjct: 60 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLFRQRVLELNASDERGIQVIRE 119
Query: 357 QIFQFAS-TKTMHKS------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA T + +S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 120 KVKAFAQLTASGSRSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 179
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL S+ RL + + + N I Y +K+ E + K
Sbjct: 180 YISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEAISYLVKVSEGDLRKA 239
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLV 492
+ L + L+ EI E ++ ++
Sbjct: 240 ITF---LQSATRLMGGKEITEKIITEIA 264
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 28/188 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL S+ RL V E+E V ++ +
Sbjct: 165 MEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEA 224
Query: 61 KKAIIDLSDGDMRKVLNILQSAA-------------TAHADEVNEDTIFTLLVS------ 101
++ +S+GD+RK + LQSA T A + ++TI LL+
Sbjct: 225 ISYLVKVSEGDLRKAITFLQSATRLMGGKEITEKIITEIAGVIPKETIDELLLGCQSGSF 284
Query: 102 -RVEKYRPSTLDE------LVS--HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
++E + ++E LV+ H I+ + + + +V K+++++ LA G E
Sbjct: 285 EKLETLAKNLINEGFAVAQLVNQLHDTIVESEDYSDKQKSAIVEKLAEVDKCLADGADEF 344
Query: 153 IQLSALIA 160
+QL +L A
Sbjct: 345 LQLMSLCA 352
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 19/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +DE+ ++++ ++ L+ +D+ L G + S ++AA
Sbjct: 39 VEKYRPKNVDEVAFQDEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTILAAA 90
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS-TKTMHKS------SYKLIILDEA 211
F + VLELNASD+RGI ++R+++ FA T + +S +K++ILDEA
Sbjct: 91 RELFGPDLFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRSDGKMCPPFKIVILDEA 150
Query: 212 DAMTNDAQNALRRKL 226
D+MT+ AQ ALRR +
Sbjct: 151 DSMTSAAQAALRRTM 165
>gi|340992727|gb|EGS23282.1| replication factor C subunit 2-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 384
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 106/154 (68%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI I+R+
Sbjct: 58 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIIRE 117
Query: 357 QIFQFASTKTM-----HKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA T+ +K+ Y KLIILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 118 KVKDFARTQLTNPPPGYKTKYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCL 177
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF LD RL+
Sbjct: 178 ICNYVTRIIDPLASRCSKFRFKSLDQGNARKRLE 211
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 74 KVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVD 133
K QS TA + T VEKYRP TL+++ + +S ++
Sbjct: 8 KARRAAQSNGTASTSTEKQTAEHTRAQPWVEKYRPKTLNDVTAQDHTVSVLQ-------- 59
Query: 134 LVLKMSDIEYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQI 189
L+ S++ + L G + S ++A + K VLELNASD+RGI I+R+++
Sbjct: 60 RTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIIREKV 119
Query: 190 FQFASTKTM-----HKSSY-----KLIILDEADAMTNDAQNALRRKL 226
FA T+ +K+ Y KLIILDEAD+MT DAQ+ALRR +
Sbjct: 120 KDFARTQLTNPPPGYKTKYPCPPFKLIILDEADSMTQDAQSALRRTM 166
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 50/205 (24%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD RL+ + + E V +
Sbjct: 166 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARKRLEEIAQLENVGLADGA 225
Query: 61 KKAIIDLSDGDMRKVLNILQSAA-------TAHADEVNEDTI---FTLLVSR-------- 102
A+I S+GD+RK + LQSAA A D + D + TL+ ++
Sbjct: 226 VDALIRCSEGDLRKAITFLQSAARLVGASQAAQGDSEDGDKMDVDKTLVTAKIVEDIAGV 285
Query: 103 ---------VEKYRPSTLDELVS-----------------------HQDIISTIEIPESM 130
V+ RP E S H+ I+ IP++
Sbjct: 286 IPDDTIQKLVKAMRPRATGETYSAIAKVVEEMVADGWSAGQTLAQLHKAIVYDETIPDTQ 345
Query: 131 LVDLVLKMSDIEYRLAAGTSEKIQL 155
+V+ S+I+ RL G E + +
Sbjct: 346 KNKIVMVFSEIDKRLVDGADEHLSM 370
>gi|388454302|ref|NP_001253606.1| replication factor C subunit 4 [Macaca mulatta]
gi|355560107|gb|EHH16835.1| hypothetical protein EGK_12194 [Macaca mulatta]
gi|380815324|gb|AFE79536.1| replication factor C subunit 4 [Macaca mulatta]
gi|383420509|gb|AFH33468.1| replication factor C subunit 4 [Macaca mulatta]
Length = 363
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 139/245 (56%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL + +++ + I Y +K+ E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRKA 241
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR- 523
+ L + L EI E ++ D+ AG ++ + AA S
Sbjct: 242 ITF---LQSATRLTGGKEITERVITDI------------AGVIPAEKIDGVFAACQSGSF 286
Query: 524 DKLEA 528
DKLEA
Sbjct: 287 DKLEA 291
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + E+E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISDEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNE---------------DTIFTLLVS--- 101
++ +S+GD+RK + LQSA E+ E D +F S
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITERVITDIAGVIPAEKIDGVFAACQSGSF 286
Query: 102 -RVEKYRPSTLDELVSHQDIISTIE--IPESMLVD-----LVLKMSDIEYRLAAGTSEKI 153
++E +DE + +S + + E+ L D + K+++++ LA G E +
Sbjct: 287 DKLEAVVKDLIDEGHAATQFVSQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHL 346
Query: 154 QLSALIA 160
QL +L A
Sbjct: 347 QLISLCA 353
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 150 DEADSMTSAAQAALRRTM 167
>gi|156938086|ref|YP_001435882.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
gi|156567070|gb|ABU82475.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
Length = 329
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 104/150 (69%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ +F++E +PH+LF GPPGTGKTT LA A LY + ++ +LELNASD+RGI
Sbjct: 26 DIVRRLKKFVEEKNVPHMLFAGPPGTGKTTAALALAHDLYGE-KYRQYILELNASDERGI 84
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ +FA ++T +KL+ILDEAD MT DAQ ALRR++E ++T RF ++ N+
Sbjct: 85 DVIRTKVKEFARSRTPPTVPFKLVILDEADNMTADAQQALRRLMEMYSTTTRFILLANFP 144
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI +QSRC FRF PL ++ RL Y
Sbjct: 145 SKIIEPVQSRCVYFRFRPLPKDKVIERLKY 174
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 113/241 (46%), Gaps = 66/241 (27%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG---TSEKIQLSALIA 160
EKYRP +LDE+V +DI+ ++ ++ ++ + L AG T + AL
Sbjct: 11 EKYRPKSLDEIVDQEDIVRRLKK--------FVEEKNVPHMLFAGPPGTGKTTAALALAH 62
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ + +LELNASD+RGI ++R ++ +FA ++T +KL+ILDEAD MT DAQ
Sbjct: 63 DLYGEKYRQYILELNASDERGIDVIRTKVKEFARSRTPPTVPFKLVILDEADNMTADAQQ 122
Query: 221 ALR-----------------------------------RKLP------------------ 227
ALR R LP
Sbjct: 123 ALRRLMEMYSTTTRFILLANFPSKIIEPVQSRCVYFRFRPLPKDKVIERLKYICQKEGVQ 182
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
D + I ++S+GDMRK +NILQ+AA +V +D VY ++GY ++I IL + L
Sbjct: 183 CEEDALEEIYNISEGDMRKAINILQAAAA--LGKVTKDAVYKAIGYVHPSKIKEILEYAL 240
Query: 288 N 288
N
Sbjct: 241 N 241
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++T RF ++ N+ SKI +QSRC FRF PL ++ RL Y+ ++E V D
Sbjct: 128 MEMYSTTTRFILLANFPSKIIEPVQSRCVYFRFRPLPKDKVIERLKYICQKEGVQCEEDA 187
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNE------DTIFT-- 97
+ I ++S+GDMRK +NILQ+AA H ++ E + FT
Sbjct: 188 LEEIYNISEGDMRKAINILQAAAALGKVTKDAVYKAIGYVHPSKIKEILEYALNGDFTKS 247
Query: 98 --LLVSRVEKYRPSTLDELVSHQDII--STIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
LL + +Y S LD L Q + + E+PE + V L ++++RLA G +++
Sbjct: 248 AKLLRDVMIEYGLSGLDVLKMFQRELMGGSFELPEELKVLLADYAGEVQFRLAEGADDEV 307
Query: 154 QLSALIA 160
QL A +A
Sbjct: 308 QLQAFLA 314
>gi|159041490|ref|YP_001540742.1| replication factor C [Caldivirga maquilingensis IC-167]
gi|157920325|gb|ABW01752.1| Replication factor C [Caldivirga maquilingensis IC-167]
Length = 348
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/140 (52%), Positives = 98/140 (70%), Gaps = 1/140 (0%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
F+ +LPHLLFYGPPG GKTT LA AR+LY + + + VLELNASD+RGI ++R+++
Sbjct: 34 FVRRGDLPHLLFYGPPGVGKTTAALALARELYGDS-WRSSVLELNASDERGIDVIREKVK 92
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
+FA T +KL+ILDEAD MT+DAQ ALRRI+E + + RF ++ NY+S I IQ
Sbjct: 93 EFARTIPTGPVPFKLVILDEADNMTSDAQQALRRIMEMYASTTRFILLANYISGIIEPIQ 152
Query: 420 SRCTRFRFGPLDSSLIMSRL 439
SRC FRF PL ++ RL
Sbjct: 153 SRCAIFRFNPLPKEAVIERL 172
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 39/194 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + + RF ++ NY+S I IQSRC FRF PL ++ RL + ++ V VT DG
Sbjct: 128 MEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLRQIAKETGVEVTEDG 187
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDEL------ 114
+AI ++S GDMRK +N LQ+ T + +V+ + ++ + V RVE +DE
Sbjct: 188 LEAIWEVSQGDMRKAINTLQTTTTTNK-KVDREAVYRV-VGRVEF---KVVDEFIESALS 242
Query: 115 ------------------VSHQDIISTIE----------IPESMLVDLVLKMSDIEYRLA 146
VS +++ IE +P V++ ++DI+ RL
Sbjct: 243 GRFEDSRKLLRNIMYTYGVSGVELLKYIEDELLINDKFKLPVDAKVEVSELVADIDNRLV 302
Query: 147 AGTSEKIQLSALIA 160
G+ E+IQL+ALIA
Sbjct: 303 TGSDEEIQLTALIA 316
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 104/229 (45%), Gaps = 71/229 (31%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VE++RP L +LV + + + L++ V + D+ + L G + AA
Sbjct: 10 VERFRPVRLVDLVDQEGV-------KVGLMEFV-RRGDLPHLLFYGPP---GVGKTTAAL 58
Query: 163 NSARD------KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
AR+ + VLELNASD+RGI ++R+++ +FA T +KL+ILDEAD MT+
Sbjct: 59 ALARELYGDSWRSSVLELNASDERGIDVIREKVKEFARTIPTGPVPFKLVILDEADNMTS 118
Query: 217 DAQNALRR-----------------------------------KLP-------------- 227
DAQ ALRR LP
Sbjct: 119 DAQQALRRIMEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLRQIAKE 178
Query: 228 ----VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVG 272
VT DG +AI ++S GDMRK +N LQ+ T + +V+ + VY VG
Sbjct: 179 TGVEVTEDGLEAIWEVSQGDMRKAINTLQTTTTTNK-KVDREAVYRVVG 226
>gi|18312778|ref|NP_559445.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559510|sp|Q8ZWS2.1|RFCS2_PYRAE RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|18160261|gb|AAL63627.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 319
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 100/146 (68%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ +F+ +PHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGI ++R
Sbjct: 27 RLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGINVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S I
Sbjct: 86 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSGII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSR RF PL + +RL Y
Sbjct: 146 EPIQSRTVMIRFSPLPKEAVFARLRY 171
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 99/224 (44%), Gaps = 63/224 (28%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP + DE+V +++ ++ L V M + + GT + L
Sbjct: 8 EKYRPRSFDEVVDLEEV-------KARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARE 60
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ A
Sbjct: 61 LYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQA 120
Query: 222 LRR-----------------------------------KLP------------------V 228
LRR LP V
Sbjct: 121 LRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGVKV 180
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVG 272
+ D +AI + + GDMR+ +N LQ AAT + V E+ V ++G
Sbjct: 181 SDDALEAIYEFTQGDMRRAINALQIAATV-SKAVTEEVVAKALG 223
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S I IQSR RF PL + +RL Y+ E E V V+ D
Sbjct: 125 MEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGVKVSDDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
+AI + + GDMR+ +N LQ AAT + V E+ +
Sbjct: 185 LEAIYEFTQGDMRRAINALQIAATV-SKAVTEEVV 218
>gi|315230688|ref|YP_004071124.1| replication factor C small subunit [Thermococcus barophilus MP]
gi|315183716|gb|ADT83901.1| replication factor C small subunit [Thermococcus barophilus MP]
Length = 326
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 144/287 (50%), Gaps = 64/287 (22%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++ +PHLLF GPPG GKTT L R+L+ + + LELNASD+RGI ++R
Sbjct: 36 RLKHYVKTGSMPHLLFAGPPGVGKTTAALCLTRELFGE-HWRHNFLELNASDERGINVIR 94
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA TK + +S+K+I LDEADA+T DAQ ALRR++E F+ NVRF + CNY SKI
Sbjct: 95 EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRMMEMFSNNVRFILSCNYSSKII 154
Query: 416 PAIQSRCT--------------RFRF---------------------------------- 427
IQSRC R RF
Sbjct: 155 EPIQSRCAIFRFRPLKDEDIAKRIRFIAENEGLELTEEGLQALLYIAEGDLRRAINVLQA 214
Query: 428 -GPLDSS-------LIMSRLDYDDISFF-------NIIIWYIKIQEIKIEKGLALTDILT 472
LD+ L+ SR +DI N + K++EI +++GL+ D+L
Sbjct: 215 AAALDTKITDENVFLVASRARPEDIREMMLMALEGNFLKAREKLREILLKQGLSGEDVLI 274
Query: 473 EISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 519
++ V L I E V L K+ + +RL G +E IQL AL+A F
Sbjct: 275 QMHKEVFNLPISEPKKVALADKIGEYNFRLVEGANEMIQLEALLAQF 321
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 98/188 (52%), Gaps = 26/188 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ NVRF + CNY SKI IQSRC FRF PL I R+ ++ E E + +T +G
Sbjct: 134 MEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLKDEDIAKRIRFIAENEGLELTEEG 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT----------------AHADEVNEDTIFTL---LVS 101
+A++ +++GD+R+ +N+LQ+AA A +++ E + L +
Sbjct: 194 LQALLYIAEGDLRRAINVLQAAAALDTKITDENVFLVASRARPEDIREMMLMALEGNFLK 253
Query: 102 RVEKYRPSTLDELVSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
EK R L + +S +D+ + + I E V L K+ + +RL G +E IQ
Sbjct: 254 AREKLREILLKQGLSGEDVLIQMHKEVFNLPISEPKKVALADKIGEYNFRLVEGANEMIQ 313
Query: 155 LSALIAAF 162
L AL+A F
Sbjct: 314 LEALLAQF 321
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 64/210 (30%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA---LI 159
VEKYRP LD++V I+ ++ +K + + L AG + +A L
Sbjct: 16 VEKYRPQRLDDIVGQDHIVKRLK--------HYVKTGSMPHLLFAGPPGVGKTTAALCLT 67
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
+ LELNASD+RGI ++R+++ +FA TK + +S+K+I LDEADA+T DAQ
Sbjct: 68 RELFGEHWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQ 127
Query: 220 NALRRKL---------------------PV------------------------------ 228
ALRR + P+
Sbjct: 128 QALRRMMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLKDEDIAKRIRFIAENEGL 187
Query: 229 --TPDGKKAIIDLSDGDMRKVLNILQSAAT 256
T +G +A++ +++GD+R+ +N+LQ+AA
Sbjct: 188 ELTEEGLQALLYIAEGDLRRAINVLQAAAA 217
>gi|328870657|gb|EGG19030.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 358
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 100/152 (65%), Gaps = 7/152 (4%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + +D LPHLLFYGPPGTGKT+TILA A LY VLELNASD+RGI IVR
Sbjct: 52 LKKSLDGGALPHLLFYGPPGTGKTSTILAIAMDLYGPDLIKDRVLELNASDERGIEIVRT 111
Query: 357 QIFQFASTKTMHKS-------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+I FAS + + S+KLIILDEAD+MT DAQ ALRR IE + RFC++CN
Sbjct: 112 KIKNFASFTVNNTTVAGKQVPSFKLIILDEADSMTQDAQAALRRTIENTSKTTRFCLLCN 171
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
Y+++I + SRC +FRF PL S + RL Y
Sbjct: 172 YITRIIEPLSSRCAKFRFKPLKSEAMGERLKY 203
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE + RFC++CNY+++I + SRC +FRF PL S + RL Y+ +QE VN+ +
Sbjct: 157 IENTSKTTRFCLLCNYITRIIEPLSSRCAKFRFKPLKSEAMGERLKYIADQEGVNLANES 216
Query: 61 K-KAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVS 116
AI +S GDMRK + +QSA +A + D + VE P TL+ ++
Sbjct: 217 TLDAIHTVSQGDMRKAITFMQSAHRFYASKSITDANIYDISGSVE---PKTLELFIN 270
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 75/138 (54%), Gaps = 19/138 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
V KYRP T+D+ V+HQD E+ ++ L + + L G + S ++A
Sbjct: 31 VSKYRPRTVDD-VAHQD-----EVVRAL--KKSLDGGALPHLLFYGPPGTGKTSTILAIA 82
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS-------SYKLIILDEA 211
+ K VLELNASD+RGI IVR +I FAS + + S+KLIILDEA
Sbjct: 83 MDLYGPDLIKDRVLELNASDERGIEIVRTKIKNFASFTVNNTTVAGKQVPSFKLIILDEA 142
Query: 212 DAMTNDAQNALRRKLPVT 229
D+MT DAQ ALRR + T
Sbjct: 143 DSMTQDAQAALRRTIENT 160
>gi|167523687|ref|XP_001746180.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775451|gb|EDQ89075.1| predicted protein [Monosiga brevicollis MX1]
Length = 323
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 103/152 (67%), Gaps = 7/152 (4%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + ++PH LFYGPPGTGKT+TILA AR+ + VLELNASD+RGIG+VR+
Sbjct: 22 LQKCVAGGDMPHTLFYGPPGTGKTSTILAVAREFFGPQLMKERVLELNASDERGIGVVRE 81
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+I FA + S +K+I+LDEADAMT AQ+ALRR IE+ + RFC++CN
Sbjct: 82 KIKNFAVMTANTRVSGGYPCPPFKIILLDEADAMTEAAQSALRRTIEQHSNVTRFCMVCN 141
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
Y+S+I + SRC +FRF PL + +++RL +
Sbjct: 142 YVSRIIEPLASRCAKFRFKPLSDATVLARLQH 173
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 29/188 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE+ + RFC++CNY+S+I + SRC +FRF PL + +++RL ++ + E V +
Sbjct: 127 IEQHSNVTRFCMVCNYVSRIIEPLASRCAKFRFKPLSDATVLARLQHIRDAENVKCADEV 186
Query: 61 KKAIIDLSDGDMRKVLNILQSA---------ATAHADEVN----EDTIFTLLVSRV---- 103
+ I+ +S GDMR+ + LQS T+H ++V+ + TI LL SR
Sbjct: 187 LQTIVKVSGGDMRQAITFLQSCHRLRGDLGIETSHVEDVSGLVPQSTINELL-SRCNENS 245
Query: 104 -EKYRPSTLDELVS--------HQ--DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
E + S D ++S HQ + + +E+ ES ++ KM+ + RL G E+
Sbjct: 246 FEALQASVDDAILSGFSGSQLLHQLHETLMEMEMDESKKAKILHKMAVADKRLIDGADEQ 305
Query: 153 IQLSALIA 160
+ L ++A
Sbjct: 306 LTLLDVLA 313
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 19/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
+E RP T ++ ++++ ++ + D+ + L G + S ++A
Sbjct: 1 MEHSRPKTTHDVAHQSEVVA--------MLQKCVAGGDMPHTLFYGPPGTGKTSTILAVA 52
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIILDEA 211
F K VLELNASD+RGIG+VR++I FA + S +K+I+LDEA
Sbjct: 53 REFFGPQLMKERVLELNASDERGIGVVREKIKNFAVMTANTRVSGGYPCPPFKIILLDEA 112
Query: 212 DAMTNDAQNALRRKL 226
DAMT AQ+ALRR +
Sbjct: 113 DAMTEAAQSALRRTI 127
>gi|336464731|gb|EGO52971.1| activator 1 41 kDa subunit [Neurospora tetrasperma FGSC 2508]
Length = 387
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 105/154 (68%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR+
Sbjct: 56 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPELIKSRVLELNASDERGISIVRE 115
Query: 357 QIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + + S+ +KLIILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 116 KVKDFARMQLTNPSAAYKARYPCPPFKLIILDEADSMTQDAQSALRRTMEMYSKITRFCL 175
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF LD RL+
Sbjct: 176 ICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLE 209
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL ++ + I+ ++ L+ S++ + L G + S ++A
Sbjct: 35 VEKYRPKTLSDVTAQDHTITVLQ--------RTLQASNLPHMLFYGPPGTGKTSTILALA 86
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR+++ FA + + S+ +KLIIL
Sbjct: 87 KELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPPFKLIIL 146
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 147 DEADSMTQDAQSALRRTM 164
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD RL+ + + E V +
Sbjct: 164 MEMYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGA 223
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+RK + LQSAA
Sbjct: 224 VDALIKCSEGDLRKAITYLQSAA 246
>gi|400601260|gb|EJP68903.1| replication factor C [Beauveria bassiana ARSEF 2860]
Length = 382
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 104/154 (67%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR+
Sbjct: 57 LQRTLQAANLPHMLFYGPPGTGKTSTILALAKQLYGPEMMKSRVLELNASDERGISIVRE 116
Query: 357 QIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + + + +K+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 117 KVKNFARMQLTNPPAGYREKYPCPPFKIIILDEADSMTQDAQSALRRTMEIYSKITRFCL 176
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF LD M RL+
Sbjct: 177 ICNYVTRIIDPLASRCSKFRFKSLDQGSAMKRLE 210
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 22/140 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +LD++ + + ++ ++ L+ +++ + L G + S ++A
Sbjct: 36 VEKYRPKSLDDVAAQEHTVTVLQ--------RTLQAANLPHMLFYGPPGTGKTSTILALA 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR+++ FA + + + +K+IIL
Sbjct: 88 KQLYGPEMMKSRVLELNASDERGISIVREKVKNFARMQLTNPPAGYREKYPCPPFKIIIL 147
Query: 209 DEADAMTNDAQNALRRKLPV 228
DEAD+MT DAQ+ALRR + +
Sbjct: 148 DEADSMTQDAQSALRRTMEI 167
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD M RL+ + E V +
Sbjct: 165 MEIYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGSAMKRLEEIAAAESVPLGDGA 224
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A++ S+GD+RK + LQSAA
Sbjct: 225 IDALVRCSEGDLRKAVTFLQSAA 247
>gi|332818666|ref|XP_003310208.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan
troglodytes]
gi|332818668|ref|XP_003310209.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan
troglodytes]
gi|410223264|gb|JAA08851.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410291994|gb|JAA24597.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410332695|gb|JAA35294.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 137/246 (55%), Gaps = 30/246 (12%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNI------IIWYIKIQEIKIEK 463
Y+S+I + SRC++FRF PL + RL D N+ I + +K+ E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRL-LDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
+ L + L EI E ++ D+ AG ++ + AA S
Sbjct: 241 AITF---LQSATRLTGGKEITEKVITDI------------AGVIPAEKIDGVFAACQSGS 285
Query: 524 -DKLEA 528
DKLEA
Sbjct: 286 FDKLEA 291
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNE---------------DTIFTLLVS--- 101
++ +S+GD+RK + LQSA E+ E D +F S
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSF 286
Query: 102 -RVEKYRPSTLDELVSHQDIISTIE--IPESMLVD-----LVLKMSDIEYRLAAGTSEKI 153
++E +DE + +++ + + E+ L D + K+++++ LA G E +
Sbjct: 287 DKLEAVVKDLIDEGHAATQLVNQVHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHL 346
Query: 154 QLSALIA 160
QL +L A
Sbjct: 347 QLISLCA 353
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 150 DEADSMTSAAQAALRRTM 167
>gi|38567232|emb|CAE76524.1| probable replication factor protein [Neurospora crassa]
Length = 366
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 105/154 (68%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR+
Sbjct: 56 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPELIKSRVLELNASDERGISIVRE 115
Query: 357 QIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + + S+ +KLIILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 116 KVKDFARMQLTNPSAAYKARYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCL 175
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF LD RL+
Sbjct: 176 ICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLE 209
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL ++ + I+ ++ L+ S++ + L G + S ++A
Sbjct: 35 VEKYRPKTLSDVTAQDHTITVLQ--------RTLQASNLPHMLFYGPPGTGKTSTILALA 86
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR+++ FA + + S+ +KLIIL
Sbjct: 87 KELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPPFKLIIL 146
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 147 DEADSMTQDAQSALRRTM 164
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD RL+ + + E V +
Sbjct: 164 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGA 223
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+RK + LQSAA
Sbjct: 224 VDALIKCSEGDLRKAITYLQSAA 246
>gi|367020560|ref|XP_003659565.1| hypothetical protein MYCTH_2296782 [Myceliophthora thermophila ATCC
42464]
gi|347006832|gb|AEO54320.1| hypothetical protein MYCTH_2296782 [Myceliophthora thermophila ATCC
42464]
Length = 384
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 106/154 (68%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR+
Sbjct: 58 LERTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVRE 117
Query: 357 QIFQFASTKTM-----HKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA T+ +KS Y K+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 118 KVKDFARTQLTNPPPGYKSRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCL 177
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF LD RL+
Sbjct: 178 ICNYVTRIIDPLASRCSKFRFKSLDQGNARRRLE 211
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 105/250 (42%), Gaps = 78/250 (31%)
Query: 73 RKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLV 132
RK +A+T+ + NE+ V EKYRP L ++ + I+ +E
Sbjct: 10 RKAAAANGTASTSTEKQTNENARAQPWV---EKYRPKKLSDVTAQDHTITVLE------- 59
Query: 133 DLVLKMSDIEYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQ 188
L+ S++ + L G + S ++A + K VLELNASD+RGI IVR++
Sbjct: 60 -RTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVREK 118
Query: 189 IFQFASTKTM-----HKSSY-----KLIILDEADAMTNDAQNALRRKL------------ 226
+ FA T+ +KS Y K+IILDEAD+MT DAQ+ALRR +
Sbjct: 119 VKDFARTQLTNPPPGYKSRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLI 178
Query: 227 -----------------------------------------PVTPDGKKAIIDLSDGDMR 245
P+ A+I SDGD+R
Sbjct: 179 CNYVTRIIDPLASRCSKFRFKSLDQGNARRRLEDIAKLEGVPIDDGAVDALIKCSDGDLR 238
Query: 246 KVLNILQSAA 255
K + LQSAA
Sbjct: 239 KAITFLQSAA 248
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD RL+ + + E V +
Sbjct: 166 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARRRLEDIAKLEGVPIDDGA 225
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I SDGD+RK + LQSAA
Sbjct: 226 VDALIKCSDGDLRKAITFLQSAA 248
>gi|157786766|ref|NP_001099339.1| replication factor C subunit 4 [Rattus norvegicus]
gi|149019930|gb|EDL78078.1| replication factor C (activator 1) 4 (predicted), isoform CRA_a
[Rattus norvegicus]
gi|195540022|gb|AAI68166.1| Rfc4 protein [Rattus norvegicus]
Length = 364
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 141/244 (57%), Gaps = 26/244 (10%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL + +++ + I Y ++I E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQKRLLDIAEKENVKIGDEEIAYLVRISEGDLRKA 241
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
+ L + L EI E ++ +DI + A T E I + A + + D
Sbjct: 242 ITF---LQSATRLTGGKEISEDVI-------TDIAGVIPAATIEGI----VTACHSGSFD 287
Query: 525 KLEA 528
KLEA
Sbjct: 288 KLEA 291
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + E+E V + +
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQKRLLDIAEKENVKIGDEE 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA E++ED I
Sbjct: 227 IAYLVRISEGDLRKAITFLQSATRLTGGKEISEDVI 262
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 116/271 (42%), Gaps = 74/271 (27%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL---------------------PVTPD-------------GKK 234
DEAD+MT+ AQ ALRR + P+T +K
Sbjct: 150 DEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQK 209
Query: 235 AIID-------------------LSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVGYP 274
++D +S+GD+RK + LQSA E++ED + + G
Sbjct: 210 RLLDIAEKENVKIGDEEIAYLVRISEGDLRKAITFLQSATRLTGGKEISEDVITDIAGVI 269
Query: 275 TKTEITNILRWLLNESMD-LCYKINRFIDEN 304
I I+ + S D L + IDE
Sbjct: 270 PAATIEGIVTACHSGSFDKLEAVLKNLIDEG 300
>gi|374327674|ref|YP_005085874.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356642943|gb|AET33622.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 329
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 102/144 (70%), Gaps = 1/144 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ ++PHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGI ++R
Sbjct: 27 RLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGINVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S+I
Sbjct: 86 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
I SRC FRF P+ +L+ RL
Sbjct: 146 DPIISRCAIFRFSPMPKNLMAERL 169
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 75/137 (54%), Gaps = 11/137 (8%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALIA 160
EKYRP + DE+V +++ + + +K D+ + L GT + L
Sbjct: 8 EKYRPRSFDEVVDLEEVKARLRG--------FVKSGDMPHLLFYGPPGTGKTTMALVLAR 59
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELNASD+RGI ++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ
Sbjct: 60 ELYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQ 119
Query: 221 ALRRKLPVTPDGKKAII 237
ALRR + + + I+
Sbjct: 120 ALRRIMEIYAQNTRFIL 136
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 26/190 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S+I I SRC FRF P+ +L+ RL + + E V + D
Sbjct: 125 MEIYAQNTRFILLANYVSRIIDPIISRCAIFRFSPMPKNLMAERLRLIAKSEGVELRDDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQ-SAATAHADEVNEDT-------------IFTLL----VSR 102
I +LS+GDMRK +N+LQ AAT + N +F L VS+
Sbjct: 185 IDIIYELSEGDMRKAINLLQVVAATNKVVDSNAVAAAAATIKPSDIIELFNLAIGGDVSK 244
Query: 103 V-EKYRPSTLDELVSHQDIISTIE-------IPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
EK R + V+ D I + + + + ++ ++DI+YRL G E+IQ
Sbjct: 245 AREKLRELMYLKGVAGVDFIRAFQRELIRMALDDDVKAEIAELLADIDYRLTQGADEEIQ 304
Query: 155 LSALIAAFNS 164
L+ L++ +
Sbjct: 305 LTYLLSKLGA 314
>gi|4506491|ref|NP_002907.1| replication factor C subunit 4 [Homo sapiens]
gi|31881687|ref|NP_853551.1| replication factor C subunit 4 [Homo sapiens]
gi|1703052|sp|P35249.2|RFC4_HUMAN RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 37 kDa subunit; Short=A1 37 kDa
subunit; AltName: Full=Activator 1 subunit 4; AltName:
Full=Replication factor C 37 kDa subunit; Short=RF-C 37
kDa subunit; Short=RFC37
gi|1498256|gb|AAB09785.1| replication factor C, 37-kDa subunit [Homo sapiens]
gi|16924323|gb|AAH17452.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|18645198|gb|AAH24022.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|22532479|gb|AAM97933.1| replication factor C (activator 1) 4 (37kD) [Homo sapiens]
gi|30582813|gb|AAP35633.1| replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|49168606|emb|CAG38798.1| RFC4 [Homo sapiens]
gi|60819475|gb|AAX36501.1| replication factor C 4 [synthetic construct]
gi|61362396|gb|AAX42213.1| replication factor C [synthetic construct]
gi|61362402|gb|AAX42214.1| replication factor C [synthetic construct]
gi|61363130|gb|AAX42340.1| replication factor C 4 [synthetic construct]
gi|119598575|gb|EAW78169.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|119598576|gb|EAW78170.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|123993605|gb|ABM84404.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123993735|gb|ABM84469.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123994261|gb|ABM84732.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123999624|gb|ABM87354.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|261860114|dbj|BAI46579.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
Length = 363
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 137/246 (55%), Gaps = 30/246 (12%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNI------IIWYIKIQEIKIEK 463
Y+S+I + SRC++FRF PL + RL D N+ I + +K+ E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRL-LDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
+ L + L EI E ++ D+ AG ++ + AA S
Sbjct: 241 AITF---LQSATRLTGGKEITEKVITDI------------AGVIPAEKIDGVFAACQSGS 285
Query: 524 -DKLEA 528
DKLEA
Sbjct: 286 FDKLEA 291
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNE---------------DTIFTLLVS--- 101
++ +S+GD+RK + LQSA E+ E D +F S
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSF 286
Query: 102 -RVEKYRPSTLDELVSHQDIISTIE--IPESMLVD-----LVLKMSDIEYRLAAGTSEKI 153
++E +DE + +++ + + E+ L D + K+++++ LA G E +
Sbjct: 287 DKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHL 346
Query: 154 QLSALIA 160
QL +L A
Sbjct: 347 QLISLCA 353
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 150 DEADSMTSAAQAALRRTM 167
>gi|297672721|ref|XP_002814437.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pongo abelii]
gi|297672723|ref|XP_002814438.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pongo abelii]
gi|397470118|ref|XP_003806680.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan paniscus]
gi|397470120|ref|XP_003806681.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan paniscus]
gi|426343233|ref|XP_004038219.1| PREDICTED: replication factor C subunit 4 isoform 1 [Gorilla
gorilla gorilla]
gi|426343235|ref|XP_004038220.1| PREDICTED: replication factor C subunit 4 isoform 2 [Gorilla
gorilla gorilla]
gi|410253804|gb|JAA14869.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 137/246 (55%), Gaps = 30/246 (12%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNI------IIWYIKIQEIKIEK 463
Y+S+I + SRC++FRF PL + RL D N+ I + +K+ E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRL-LDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
+ L + L EI E ++ D+ AG ++ + AA S
Sbjct: 241 AITF---LQSATRLTGGKEITEKVITDI------------AGVIPAEKIDGVFAACQSGS 285
Query: 524 -DKLEA 528
DKLEA
Sbjct: 286 FDKLEA 291
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNE---------------DTIFTLLVS--- 101
++ +S+GD+RK + LQSA E+ E D +F S
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSF 286
Query: 102 -RVEKYRPSTLDELVSHQDIISTIE--IPESMLVD-----LVLKMSDIEYRLAAGTSEKI 153
++E +DE + +++ + + E+ L D + K+++++ LA G E +
Sbjct: 287 DKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHL 346
Query: 154 QLSALIA 160
QL +L A
Sbjct: 347 QLISLCA 353
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 150 DEADSMTSAAQAALRRTM 167
>gi|30584245|gb|AAP36371.1| Homo sapiens replication factor C (activator 1) 4, 37kDa [synthetic
construct]
gi|54697188|gb|AAV38966.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|60653953|gb|AAX29669.1| replication factor C 4 [synthetic construct]
gi|60654181|gb|AAX29783.1| replication factor C 4 [synthetic construct]
gi|60830868|gb|AAX36948.1| replication factor C 4 [synthetic construct]
gi|61367088|gb|AAX42950.1| replication factor C 4 [synthetic construct]
Length = 364
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 137/246 (55%), Gaps = 30/246 (12%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNI------IIWYIKIQEIKIEK 463
Y+S+I + SRC++FRF PL + RL D N+ I + +K+ E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRL-LDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
+ L + L EI E ++ D+ AG ++ + AA S
Sbjct: 241 AITF---LQSATRLTGGKEITEKVITDI------------AGVIPAEKIDGVFAACQSGS 285
Query: 524 -DKLEA 528
DKLEA
Sbjct: 286 FDKLEA 291
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNE---------------DTIFTLLVS--- 101
++ +S+GD+RK + LQSA E+ E D +F S
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSF 286
Query: 102 -RVEKYRPSTLDELVSHQDIISTIE--IPESMLVD-----LVLKMSDIEYRLAAGTSEKI 153
++E +DE + +++ + + E+ L D + K+++++ LA G E +
Sbjct: 287 DKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHL 346
Query: 154 QLSALIA 160
QL +L A
Sbjct: 347 QLISLCA 353
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 150 DEADSMTSAAQAALRRTM 167
>gi|332215081|ref|XP_003256668.1| PREDICTED: replication factor C subunit 4 isoform 1 [Nomascus
leucogenys]
Length = 363
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 137/246 (55%), Gaps = 30/246 (12%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNI------IIWYIKIQEIKIEK 463
Y+S+I + SRC++FRF PL + RL D N+ I + +K+ E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRL-LDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
+ L + L EI E ++ D+ AG ++ + AA S
Sbjct: 241 AITF---LQSATRLTGGKEITEKVITDI------------AGVIPAEKIDGVFAACQSGS 285
Query: 524 -DKLEA 528
DKLEA
Sbjct: 286 FDKLEA 291
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNE---------------DTIFTLLVS--- 101
++ +S+GD+RK + LQSA E+ E D +F S
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSF 286
Query: 102 -RVEKYRPSTLDELVSHQDIISTIE--IPESMLVD-----LVLKMSDIEYRLAAGTSEKI 153
++E +DE + +++ + + E+ L D + K+++++ LA G E +
Sbjct: 287 DKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHL 346
Query: 154 QLSALIA 160
QL +L A
Sbjct: 347 QLISLCA 353
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 150 DEADSMTSAAQAALRRTM 167
>gi|403270485|ref|XP_003927208.1| PREDICTED: uncharacterized protein LOC101046302 [Saimiri
boliviensis boliviensis]
Length = 766
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 140/245 (57%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 465 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 524
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 525 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 584
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL + +++ + I Y +K+ E + K
Sbjct: 585 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRKA 644
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR- 523
+ L + L EI E ++ D+ AG +++ + AA S
Sbjct: 645 ITF---LQSATRLTGGKEITEKVITDI------------AGVIPAEKINGVFAACQSGSF 689
Query: 524 DKLEA 528
DKLEA
Sbjct: 690 DKLEA 694
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + E+E V ++ +G
Sbjct: 570 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISDEG 629
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA E+ E I
Sbjct: 630 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVI 665
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 19/131 (14%)
Query: 107 RPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA----F 162
RP +DE+ +++++ ++ L+ +D+ L G + S ++AA F
Sbjct: 448 RPKCVDEVAFQEEVVAVLKK--------SLEGADLPNLLFYGPPGTGKTSTILAAARELF 499
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIILDEADAMT 215
+L VLELNASD+RGI +VR+++ FA S +K++ILDEAD+MT
Sbjct: 500 GPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMT 559
Query: 216 NDAQNALRRKL 226
+ AQ ALRR +
Sbjct: 560 SAAQAALRRTM 570
>gi|317575745|ref|NP_001187540.1| replication factor C subunit 4 [Ictalurus punctatus]
gi|308323307|gb|ADO28790.1| replication factor c subunit 4 [Ictalurus punctatus]
Length = 358
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 106/150 (70%), Gaps = 7/150 (4%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+LY + VLELNASD+RGI ++R+
Sbjct: 57 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVIRE 116
Query: 357 QIFQF-----ASTKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ F A T+T KS +K+IILDEAD+MT AQ ALRR +EK + RFC+ICN
Sbjct: 117 KVKNFAQLTVAGTRTDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESRTTRFCLICN 176
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC++FRF PL + + RL
Sbjct: 177 YVSRIIEPLTSRCSKFRFKPLTNEVQQERL 206
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 116/264 (43%), Gaps = 81/264 (30%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 33 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 84
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLIIL 208
AA + + VLELNASD+RGI ++R+++ FA T+T KS +K+IIL
Sbjct: 85 AAARELYGPELYRQRVLELNASDERGIQVIREKVKNFAQLTVAGTRTDGKSCPPFKIIIL 144
Query: 209 DEADAMTNDAQNALRRKL---------------------PVT------------------ 229
DEAD+MT AQ ALRR + P+T
Sbjct: 145 DEADSMTGAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLTNEVQQE 204
Query: 230 --------------PDGKKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTVYNSVGYP 274
+G A++ +S+GD+RK + +LQS A A+ E+ E V G
Sbjct: 205 RLLEICAKENLKYSKEGIDALVKVSEGDLRKAITLLQSTARFSAEKEITESLVIEIAGVV 264
Query: 275 TKTEITNILRWLLNESMDLCYKIN 298
I N+L+ CYK N
Sbjct: 265 PPKVIENLLQ--------TCYKGN 280
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + + RL + +E + + +G
Sbjct: 162 MEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLTNEVQQERLLEICAKENLKYSKEG 221
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTIFTL 98
A++ +S+GD+RK + +LQS A A+ E+ E + +
Sbjct: 222 IDALVKVSEGDLRKAITLLQSTARFSAEKEITESLVIEI 260
>gi|225680958|gb|EEH19242.1| replication factor C subunit 4 [Paracoccidioides brasiliensis Pb03]
Length = 374
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 106/157 (67%), Gaps = 13/157 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA ++ L+ + + +LELNASD+RGI IVR+
Sbjct: 59 LQRTLQASNLPHMLFYGPPGTGKTSTILALSKSLFGPQLYRSRILELNASDERGISIVRE 118
Query: 357 QIFQFASTKTMHKS-------------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+I FA + H +K+IILDEAD+MT DAQ+ALRR +E+++ R
Sbjct: 119 KIKDFARMQLSHPPVSDTAYCEKYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITR 178
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
FC++CNY+++I + SRC++FRF LD S SRL+
Sbjct: 179 FCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRLE 215
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 78/147 (53%), Gaps = 25/147 (17%)
Query: 97 TLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
T L VEKYRP TLD++ S + I+ ++ L+ S++ + L G + S
Sbjct: 32 TRLQPWVEKYRPKTLDDVASQEHTITVLQ--------RTLQASNLPHMLFYGPPGTGKTS 83
Query: 157 ALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS----------- 201
++A F + +LELNASD+RGI IVR++I FA + H
Sbjct: 84 TILALSKSLFGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPVSDTAYCEKYP 143
Query: 202 --SYKLIILDEADAMTNDAQNALRRKL 226
+K+IILDEAD+MT DAQ+ALRR +
Sbjct: 144 CPPFKIIILDEADSMTQDAQSALRRTM 170
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF LD S SRL+ + EK+ + DG
Sbjct: 170 MERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRLEEIARVEKLRLA-DG 228
>gi|226292668|gb|EEH48088.1| replication factor C subunit 2 [Paracoccidioides brasiliensis Pb18]
Length = 395
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 106/157 (67%), Gaps = 13/157 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA ++ L+ + + +LELNASD+RGI IVR+
Sbjct: 59 LQRTLQASNLPHMLFYGPPGTGKTSTILALSKSLFGPQLYRSRILELNASDERGISIVRE 118
Query: 357 QIFQFASTKTMHKS-------------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+I FA + H +K+IILDEAD+MT DAQ+ALRR +E+++ R
Sbjct: 119 KIKDFARMQLSHPPVSDTAYCEKYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITR 178
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
FC++CNY+++I + SRC++FRF LD S SRL+
Sbjct: 179 FCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRLE 215
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 78/147 (53%), Gaps = 25/147 (17%)
Query: 97 TLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
T L VEKYRP TLD++ S + I+ ++ L+ S++ + L G + S
Sbjct: 32 TRLQPWVEKYRPKTLDDVASQEHTITVLQ--------RTLQASNLPHMLFYGPPGTGKTS 83
Query: 157 ALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS----------- 201
++A F + +LELNASD+RGI IVR++I FA + H
Sbjct: 84 TILALSKSLFGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPVSDTAYCEKYP 143
Query: 202 --SYKLIILDEADAMTNDAQNALRRKL 226
+K+IILDEAD+MT DAQ+ALRR +
Sbjct: 144 CPPFKIIILDEADSMTQDAQSALRRTM 170
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 54/83 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF LD S SRL+ + EK+ +
Sbjct: 170 MERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRLEEIARVEKLRLADGC 229
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ +I S+GD+R+ + +QSAA
Sbjct: 230 IETLIRCSEGDLRRAITFMQSAA 252
>gi|114052583|ref|NP_001039359.1| replication factor C subunit 4 [Bos taurus]
gi|88954368|gb|AAI14042.1| Replication factor C (activator 1) 4, 37kDa [Bos taurus]
gi|296491286|tpg|DAA33349.1| TPA: replication factor C 4 [Bos taurus]
Length = 337
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 125/207 (60%), Gaps = 15/207 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL D + + N I Y +++ E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRKA 241
Query: 465 LALTDILTEISLLVHRLEIPESMLVDL 491
+ L + L E+ E ++ D+
Sbjct: 242 ITF---LQSATRLTGGKEVTEKVITDI 265
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 89/163 (54%), Gaps = 5/163 (3%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTIFTLLVSRVEKYRPSTLDELVS--H 117
++ +S+GD+RK + LQSA EV E I + + + +T +LV+ H
Sbjct: 227 IAYLVQVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGDLINEGHAAT--QLVNQLH 284
Query: 118 QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
++ + + + K+++++ LA G E +QL +L A
Sbjct: 285 DVVVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCA 327
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 150 DEADSMTSAAQAALRRTM 167
>gi|255088619|ref|XP_002506232.1| predicted protein [Micromonas sp. RCC299]
gi|226521503|gb|ACO67490.1| predicted protein [Micromonas sp. RCC299]
Length = 329
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 75/151 (49%), Positives = 102/151 (67%), Gaps = 6/151 (3%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +PH+LFYGPPGTGKTT LA R+LY + VLELNASD+RGI +VR+
Sbjct: 30 LEKALETANMPHMLFYGPPGTGKTTCALAICRQLYGPELIKSRVLELNASDERGISVVRN 89
Query: 357 QIFQFASTKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+I FAST + YK++ILDEAD+MTNDAQ+ALRR +E ++ RF I+CNY
Sbjct: 90 KIKGFASTAVGQGAPGYPSPPYKILILDEADSMTNDAQSALRRTMETYSKVTRFFILCNY 149
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+S+I I SRC +FRF PL ++ RL +
Sbjct: 150 ISRIIEPIASRCAKFRFKPLGHEVMGDRLKF 180
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 77/134 (57%), Gaps = 18/134 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP ++++ ++++ T+E L+ +++ + L G + + +A
Sbjct: 9 VEKYRPRNINDVAHQEEVVRTLE--------KALETANMPHMLFYGPPGTGKTTCALAIC 60
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------YKLIILDEAD 212
+ K VLELNASD+RGI +VR++I FAST + YK++ILDEAD
Sbjct: 61 RQLYGPELIKSRVLELNASDERGISVVRNKIKGFASTAVGQGAPGYPSPPYKILILDEAD 120
Query: 213 AMTNDAQNALRRKL 226
+MTNDAQ+ALRR +
Sbjct: 121 SMTNDAQSALRRTM 134
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 13/108 (12%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF I+CNY+S+I I SRC +FRF PL ++ RL ++ E + +
Sbjct: 134 METYSKVTRFFILCNYISRIIEPIASRCAKFRFKPLGHEVMGDRLKFIATAEGLTLGEGC 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAA-------------TAHADEVNEDTI 95
+A S GDMRK + +LQSAA TA A V+ED +
Sbjct: 194 YEACSTHSGGDMRKAITLLQSAARLFGTATITGKEITAVAGAVDEDQV 241
>gi|116207062|ref|XP_001229340.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
gi|88183421|gb|EAQ90889.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
Length = 382
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 106/154 (68%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR+
Sbjct: 58 LERTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVRE 117
Query: 357 QIFQFASTK-----TMHKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA T+ +K+ Y K+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 118 KVKDFARTQLTNPPAGYKTRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCL 177
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF LD RL+
Sbjct: 178 ICNYVTRIIDPLASRCSKFRFKSLDQGNARRRLE 211
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 95/220 (43%), Gaps = 75/220 (34%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL ++ + I+ +E L+ S++ + L G + S ++A
Sbjct: 37 VEKYRPKTLSDVTAQDHTITVLE--------RTLQASNLPHMLFYGPPGTGKTSTILALA 88
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-----TMHKSSY-----KLIIL 208
+ K VLELNASD+RGI IVR+++ FA T+ +K+ Y K+IIL
Sbjct: 89 KELYGPELMKSRVLELNASDERGISIVREKVKDFARTQLTNPPAGYKTRYPCPPFKIIIL 148
Query: 209 DEADAMTNDAQNALRRKL------------------------------------------ 226
DEAD+MT DAQ+ALRR +
Sbjct: 149 DEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARR 208
Query: 227 -----------PVTPDGKKAIIDLSDGDMRKVLNILQSAA 255
P+ A+I SDGD+RK + LQSAA
Sbjct: 209 RLEEIARLEGVPIEDAAVDALIKCSDGDLRKAITFLQSAA 248
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD RL+ + E V +
Sbjct: 166 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARRRLEEIARLEGVPIEDAA 225
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I SDGD+RK + LQSAA
Sbjct: 226 VDALIKCSDGDLRKAITFLQSAA 248
>gi|145477489|ref|XP_001424767.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391833|emb|CAK57369.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 121/196 (61%), Gaps = 14/196 (7%)
Query: 260 DEVNEDTVYNSVGYPT-KTEITNILRWLLNESMDLCYK------INRFIDENELPHLLFY 312
++ N++T V P K + + ++ N+ DL Y+ + + LPHLL +
Sbjct: 7 NQFNKNTSAMQVEEPVVKPMLPWVEKYRPNKIEDLAYQEEVVQSLQGVLKTGNLPHLLLH 66
Query: 313 GPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKS-- 370
GPPGTGKT+TI+A A++L+ + VLELNASDDRGI +VR+++ +FA
Sbjct: 67 GPPGTGKTSTIIALAKQLFGPDFWRQRVLELNASDDRGINVVRNKVKKFAEQIVAKNPNP 126
Query: 371 -----SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRF 425
SYK+IILDEAD+MTNDAQ+ALRRIIE + T RFCIICNY++KI + SRC ++
Sbjct: 127 GFLCPSYKIIILDEADSMTNDAQSALRRIIEDYATTTRFCIICNYITKIIEPLVSRCVKY 186
Query: 426 RFGPLDSSLIMSRLDY 441
RF + + + RL +
Sbjct: 187 RFKSIPENEQIERLKF 202
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 119/264 (45%), Gaps = 72/264 (27%)
Query: 92 EDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE 151
E+ + ++ VEKYRP+ +++L ++++ +++ VLK ++ + L G
Sbjct: 19 EEPVVKPMLPWVEKYRPNKIEDLAYQEEVVQSLQ--------GVLKTGNLPHLLLHGPPG 70
Query: 152 KIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS------ 201
+ S +IA F + VLELNASDDRGI +VR+++ +FA
Sbjct: 71 TGKTSTIIALAKQLFGPDFWRQRVLELNASDDRGINVVRNKVKKFAEQIVAKNPNPGFLC 130
Query: 202 -SYKLIILDEADAMTNDAQNALRR------------------------------------ 224
SYK+IILDEAD+MTNDAQ+ALRR
Sbjct: 131 PSYKIIILDEADSMTNDAQSALRRIIEDYATTTRFCIICNYITKIIEPLVSRCVKYRFKS 190
Query: 225 --------KLPVTPDGKKAIIDL---------SDGDMRKVLNILQSAATAHADEVNEDTV 267
+L D + +L S GD+RK +N+LQS++T + +N+ +
Sbjct: 191 IPENEQIERLKFVADSESVTYNLDALKQLVVVSGGDLRKSVNMLQSSSTLYEKSINKKAI 250
Query: 268 YNSVGYPTKTEITNILRWLLNESM 291
G+ +I +++ + +S+
Sbjct: 251 NEISGFIPDEQIEDLVSVIQTKSI 274
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 59/95 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE + T RFCIICNY++KI + SRC ++RF + + + RL +V + E V D
Sbjct: 156 IEDYATTTRFCIICNYITKIIEPLVSRCVKYRFKSIPENEQIERLKFVADSESVTYNLDA 215
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
K ++ +S GD+RK +N+LQS++T + +N+ I
Sbjct: 216 LKQLVVVSGGDLRKSVNMLQSSSTLYEKSINKKAI 250
>gi|308322095|gb|ADO28185.1| replication factor c subunit 4 [Ictalurus furcatus]
Length = 358
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 106/150 (70%), Gaps = 7/150 (4%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+LY + VLELNASD+RGI ++R+
Sbjct: 57 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVIRE 116
Query: 357 QIFQF-----ASTKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ F A T+T KS +K+IILDEAD+MT AQ ALRR +EK + RFC+ICN
Sbjct: 117 KVKNFAQLTVAGTRTDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESRTTRFCLICN 176
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC++FRF PL + + RL
Sbjct: 177 YVSRIIEPLTSRCSKFRFKPLTNEVQQERL 206
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 116/264 (43%), Gaps = 81/264 (30%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 33 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 84
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLIIL 208
AA + + VLELNASD+RGI ++R+++ FA T+T KS +K+IIL
Sbjct: 85 AAARELYGPELYRQRVLELNASDERGIQVIREKVKNFAQLTVAGTRTDGKSCPPFKIIIL 144
Query: 209 DEADAMTNDAQNALRRKL---------------------PVT------------------ 229
DEAD+MT AQ ALRR + P+T
Sbjct: 145 DEADSMTGAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLTNEVQQE 204
Query: 230 --------------PDGKKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTVYNSVGYP 274
+G A++ +S+GD+RK + +LQS A A+ E+ E V G
Sbjct: 205 RLLEICAKENLKYSKEGIDALVKVSEGDLRKAITLLQSTARFGAEKEITESLVIEIAGVV 264
Query: 275 TKTEITNILRWLLNESMDLCYKIN 298
I N+L+ CYK N
Sbjct: 265 PPKVIENLLQ--------TCYKGN 280
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + + RL + +E + + +G
Sbjct: 162 MEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLTNEVQQERLLEICAKENLKYSKEG 221
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTIFTL 98
A++ +S+GD+RK + +LQS A A+ E+ E + +
Sbjct: 222 IDALVKVSEGDLRKAITLLQSTARFGAEKEITESLVIEI 260
>gi|332796204|ref|YP_004457704.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
gi|332693939|gb|AEE93406.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
Length = 326
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 100/150 (66%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ RF+ E +PHLLF GPPGTGKTT LA LY + + LELNASD+RGI
Sbjct: 24 DIVERLKRFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGDS-YEQFFLELNASDERGI 82
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R+++ +FA T +K+I+LDEAD MT DAQ ALRR +E +T + RF + CNYL
Sbjct: 83 DVIRNKVKEFARTMVSSSVPFKVILLDEADNMTADAQQALRRTMELYTESTRFILACNYL 142
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI IQSR FRF PL ++SRL++
Sbjct: 143 SKIIDPIQSRTALFRFYPLKKEDVVSRLEF 172
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 103/189 (54%), Gaps = 31/189 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T + RF + CNYLSKI IQSR FRF PL ++SRL+++ ++EKV
Sbjct: 126 MELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVVSRLEFIAKEEKVEYDEKA 185
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL--------------------V 100
+ I D++ GDMRK +N LQ AA+A+ +V +T+F +L +
Sbjct: 186 LETIYDVTMGDMRKAINTLQ-AASAYG-KVTIETVFKVLGLAQPKEVRDMLKLALSGKFM 243
Query: 101 SRVEKYRPSTLDELVSHQDII---------STIEIPESMLVDLVLKMSDIEYRLAAGTSE 151
EK R + +S +DI+ + ++IPE + V L+ + ++E+R+ G +
Sbjct: 244 EAREKLRSLLVTYGLSGEDIVKQLHRELTSNELQIPEELRVLLMDYIGEVEFRIIEGADD 303
Query: 152 KIQLSALIA 160
+IQLSAL+A
Sbjct: 304 EIQLSALLA 312
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 113/241 (46%), Gaps = 66/241 (27%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP +LD++V+ +DI+ ++ +K ++ + L AG + +A +A +
Sbjct: 9 EKYRPRSLDDIVNQKDIVERLK--------RFVKEKNMPHLLFAGPPGTGKTTAALALVH 60
Query: 164 SAR-DKLE--VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
D E LELNASD+RGI ++R+++ +FA T +K+I+LDEAD MT DAQ
Sbjct: 61 DLYGDSYEQFFLELNASDERGIDVIRNKVKEFARTMVSSSVPFKVILLDEADNMTADAQQ 120
Query: 221 ALRRKLPVTPDGKKAII------------------------------------------- 237
ALRR + + + + I+
Sbjct: 121 ALRRTMELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVVSRLEFIAKEEKVE 180
Query: 238 ----------DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
D++ GDMRK +N LQ AA+A+ +V +TV+ +G E+ ++L+ L
Sbjct: 181 YDEKALETIYDVTMGDMRKAINTLQ-AASAYG-KVTIETVFKVLGLAQPKEVRDMLKLAL 238
Query: 288 N 288
+
Sbjct: 239 S 239
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 455 KIQEIKIEKGLALTDILTEI--SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
K++ + + GL+ DI+ ++ L + L+IPE + V L+ + ++E+R+ G ++IQL
Sbjct: 248 KLRSLLVTYGLSGEDIVKQLHRELTSNELQIPEELRVLLMDYIGEVEFRIIEGADDEIQL 307
Query: 513 SALIA 517
SAL+A
Sbjct: 308 SALLA 312
>gi|190347750|gb|EDK40085.2| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/146 (52%), Positives = 99/146 (67%), Gaps = 10/146 (6%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPH+LFYGPPGTGKT+T+LA AR+LY + VLELNASD+RGI IVR ++ FA
Sbjct: 53 LPHMLFYGPPGTGKTSTVLALARELYGPDLIKSRVLELNASDERGIAIVRQKVKNFARLT 112
Query: 366 TMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+ S YKLIILDEAD+MT DAQ ALRR +E ++ RFC+ICNY+++I
Sbjct: 113 VSNASPEDLEKYPCPPYKLIILDEADSMTYDAQAALRRTMETYSGVTRFCLICNYITRII 172
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF PL + + RL Y
Sbjct: 173 DPLASRCSKFRFKPLANDNAVQRLRY 198
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 58/83 (69%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF PL + + RL Y+++QE++NV D
Sbjct: 152 METYSGVTRFCLICNYITRIIDPLASRCSKFRFKPLANDNAVQRLRYIVQQEELNVDEDV 211
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
++ +S+GD+R+ + LQSAA
Sbjct: 212 FSYLLTISNGDLRRAITYLQSAA 234
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 73/141 (51%), Gaps = 28/141 (19%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP LD++ S ++ ++ L +++ + L G + S ++A
Sbjct: 23 VEKYRPKNLDDVASQDHAVNVLKKS--------LVSANLPHMLFYGPPGTGKTSTVLAL- 73
Query: 163 NSARD-------KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKL 205
AR+ K VLELNASD+RGI IVR ++ FA + S YKL
Sbjct: 74 --ARELYGPDLIKSRVLELNASDERGIAIVRQKVKNFARLTVSNASPEDLEKYPCPPYKL 131
Query: 206 IILDEADAMTNDAQNALRRKL 226
IILDEAD+MT DAQ ALRR +
Sbjct: 132 IILDEADSMTYDAQAALRRTM 152
>gi|367007401|ref|XP_003688430.1| hypothetical protein TPHA_0O00240 [Tetrapisispora phaffii CBS 4417]
gi|357526739|emb|CCE65996.1| hypothetical protein TPHA_0O00240 [Tetrapisispora phaffii CBS 4417]
Length = 352
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 106/156 (67%), Gaps = 12/156 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + LPH+LFYGPPGTGKT+TILA ++L+ + VLELNASD+RGI IVR+
Sbjct: 48 LKRTLGSANLPHMLFYGPPGTGKTSTILALTKELFGPQLVKSRVLELNASDERGISIVRE 107
Query: 357 QIFQFASTKTMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
++ FA T+ K S YK+IILDEAD+MT DAQ+ALRR +E ++T RFC
Sbjct: 108 KVKNFARL-TVSKPSKDDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSTVTRFC 166
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ICNY+++I + SRC++FRF LD + + RL Y
Sbjct: 167 LICNYVTRIIDPLASRCSKFRFKALDETNALDRLKY 202
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++T RFC+ICNY+++I + SRC++FRF LD + + RL YV QE
Sbjct: 156 METYSTVTRFCLICNYVTRIIDPLASRCSKFRFKALDETNALDRLKYVATQESTKYEEGT 215
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA 85
+ I+ +S GD+R+ + +LQS + +
Sbjct: 216 LEKILQISAGDLRRAITLLQSVSKS 240
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 24/139 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LD++ + ++ ++ L +++ + L G + S ++A
Sbjct: 27 VEKYRPRNLDDVAAQDHAVAVLK--------RTLGSANLPHMLFYGPPGTGKTSTILALT 78
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----------YKLII 207
F K VLELNASD+RGI IVR+++ FA T+ K S YK+II
Sbjct: 79 KELFGPQLVKSRVLELNASDERGISIVREKVKNFARL-TVSKPSKDDLENYPCPPYKIII 137
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEAD+MT DAQ+ALRR +
Sbjct: 138 LDEADSMTADAQSALRRTM 156
>gi|291400267|ref|XP_002716498.1| PREDICTED: replication factor C 4 [Oryctolagus cuniculus]
Length = 364
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 126/208 (60%), Gaps = 17/208 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIII------WYIKIQEIKIEK 463
Y+S+I + SRC++FRF PL + RL D N+II + +K+ E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRL-LDIAEKENVIISNEGIAYLVKVSEGDLRK 240
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDL 491
+ L + L E+ E+++ D+
Sbjct: 241 AITF---LQSATRLTGGKEVTENVITDI 265
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + E+E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVIISNEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA EV E+ I
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEVTENVI 262
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 112/271 (41%), Gaps = 74/271 (27%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ ++++S ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVSVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL---------------------PVTP----------------- 230
DEAD+MT+ AQ ALRR + P+T
Sbjct: 150 DEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQ 209
Query: 231 ---------------DGKKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVGYP 274
+G ++ +S+GD+RK + LQSA EV E+ + + G
Sbjct: 210 RLLDIAEKENVIISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTENVITDIAGVI 269
Query: 275 TKTEITNILRWLLNESMD-LCYKINRFIDEN 304
I I S D L + IDE
Sbjct: 270 PPETINGIFAACQGGSFDKLEGVVKDLIDEG 300
>gi|301117462|ref|XP_002906459.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
gi|262107808|gb|EEY65860.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
Length = 339
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 102/145 (70%), Gaps = 4/145 (2%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTK-AQFNAMVLELNASDDRGIGIVRDQIF 359
I +LPHLLFYGPPGTGKT+TI+A R+L+ + N LELNASDDRGI +VR+++
Sbjct: 45 IANGQLPHLLFYGPPGTGKTSTIVAVGRQLFGPDFRKNGRFLELNASDDRGIKVVREKVK 104
Query: 360 QFASTKTMHKSS---YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
FA S +K+I+LDEAD+MT DAQ+ALRR++E ++ RFC+ICNY+S+I
Sbjct: 105 SFAQGAISSASGLPPFKIIVLDEADSMTGDAQSALRRMMENYSKVTRFCLICNYVSRIIE 164
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC +FRF PL+ + SR+ +
Sbjct: 165 PVASRCAKFRFAPLEKISMASRVRF 189
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+S+I + SRC +FRF PL+ + SR+ ++ +E+V+V+
Sbjct: 143 MENYSKVTRFCLICNYVSRIIEPVASRCAKFRFAPLEKISMASRVRFIASEERVDVSDSV 202
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-DEVNEDTIFTL 98
+++++ S GD+RK +N LQSA DE+++D + +
Sbjct: 203 LESLLECSTGDLRKAINYLQSAKQLCGDDELSQDDVIAV 241
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 16/132 (12%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP +DE+ + +++T++ + + + L G + S ++A
Sbjct: 20 VEKYRPKNVDEISHQEHVVATLKTS--------IANGQLPHLLFYGPPGTGKTSTIVAVG 71
Query: 163 NSA-----RDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---YKLIILDEADAM 214
R LELNASDDRGI +VR+++ FA S +K+I+LDEAD+M
Sbjct: 72 RQLFGPDFRKNGRFLELNASDDRGIKVVREKVKSFAQGAISSASGLPPFKIIVLDEADSM 131
Query: 215 TNDAQNALRRKL 226
T DAQ+ALRR +
Sbjct: 132 TGDAQSALRRMM 143
>gi|431838862|gb|ELK00791.1| Replication factor C subunit 4 [Pteropus alecto]
Length = 394
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 136/245 (55%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 92 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 151
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 152 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 211
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL + + N + Y +K+ E + K
Sbjct: 212 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAGKEHVKISNEGVSYLVKVSEGDLRKA 271
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR- 523
+ L + L EI E ++ D+ AG + + AA S
Sbjct: 272 ITF---LQSATRLTGGKEITEKVITDI------------AGVIPAETIDGIFAACQSGSF 316
Query: 524 DKLEA 528
DKLEA
Sbjct: 317 DKLEA 321
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + +E V ++ +G
Sbjct: 197 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAGKEHVKISNEG 256
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA E+ E I
Sbjct: 257 VSYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVI 292
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 68 VPWVEKYRPKCVDEVAFQEEVVAVLK--------KSLEGADLPNLLFYGPPGTGKTSTIL 119
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 120 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 179
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 180 DEADSMTSAAQAALRRTM 197
>gi|387593541|gb|EIJ88565.1| hypothetical protein NEQG_01255 [Nematocida parisii ERTm3]
gi|387597195|gb|EIJ94815.1| hypothetical protein NEPG_00339 [Nematocida parisii ERTm1]
Length = 317
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/134 (55%), Positives = 98/134 (73%), Gaps = 3/134 (2%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
+ ++PH LF+GPPGTGKTT A R++ + N V+ELNASD+RGI ++RD++
Sbjct: 34 LVKSGDIPHFLFFGPPGTGKTTAAKAICREVLKTSDRN--VMELNASDERGISVIRDKVK 91
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
FAST + + K++ILDEAD+MT DAQNALRRIIE ++ NVRF IICNY +KI PAI+
Sbjct: 92 VFASTFGI-SNKMKMVILDEADSMTKDAQNALRRIIEIYSKNVRFIIICNYFTKIIPAIK 150
Query: 420 SRCTRFRFGPLDSS 433
SRC FRFGP+ S
Sbjct: 151 SRCAPFRFGPVKPS 164
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 97/192 (50%), Gaps = 31/192 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ NVRF IICNY +KI PAI+SRC FRFGP+ S + + +I +E G
Sbjct: 126 IEIYSKNVRFIIICNYFTKIIPAIKSRCAPFRFGPVKPSEMFGFIKEIISKEGGTGDTSG 185
Query: 61 KKAIIDLSDGDMRKVLN------------ILQSAATAHADEVNEDTIF-TLLVSRVEKYR 107
+ + ++S GD+RK +N I H ++ ++ I TL + R E ++
Sbjct: 186 IERVCEISQGDIRKAINLTNGLLITANREITSEKVNEHYKDIKKEEIAETLHIMRTENFQ 245
Query: 108 PSTLDELVSHQDIISTIEIPE--SMLVDLVLK--------------MSDIEYRLAAGTSE 151
E H+ + + + E + + +L+ K +S+IE+RLA G SE
Sbjct: 246 -RVKKEFEKHR-VEYGLGLKEIVNEIAELLKKENNNNQSRCKEMQYLSEIEHRLARGASE 303
Query: 152 KIQLSALIAAFN 163
+Q +ALI+ F+
Sbjct: 304 TVQENALISYFS 315
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 13/137 (9%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALIA 160
EKYRP+ L+ LV + I + ++ ++K DI + L GT + A+
Sbjct: 11 EKYRPTHLENLVGNVHITAGLQ--------ALVKSGDIPHFLFFGPPGTGKTTAAKAICR 62
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
D+ V+ELNASD+RGI ++RD++ FAST + + K++ILDEAD+MT DAQN
Sbjct: 63 EVLKTSDR-NVMELNASDERGISVIRDKVKVFASTFGI-SNKMKMVILDEADSMTKDAQN 120
Query: 221 ALRRKLPVTPDGKKAII 237
ALRR + + + II
Sbjct: 121 ALRRIIEIYSKNVRFII 137
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 460 KIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 519
++E GL L +I+ EI+ L+ + + +S+IE+RLA G SE +Q +ALI+ F
Sbjct: 255 RVEYGLGLKEIVNEIAELLKKENNNNQSRCKEMQYLSEIEHRLARGASETVQENALISYF 314
Query: 520 N 520
+
Sbjct: 315 S 315
>gi|295672510|ref|XP_002796801.1| replication factor C subunit 2 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282173|gb|EEH37739.1| replication factor C subunit 2 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 404
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 106/157 (67%), Gaps = 13/157 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA ++ L+ + + +LELNASD+RGI IVR+
Sbjct: 68 LQRTLQASNLPHMLFYGPPGTGKTSTILALSKSLFGPQLYRSRILELNASDERGISIVRE 127
Query: 357 QIFQFASTKTMHKS-------------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+I FA + H +K+IILDEAD+MT DAQ+ALRR +E+++ R
Sbjct: 128 KIKDFARMQLSHPPVSDTAYCEKYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITR 187
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
FC++CNY+++I + SRC++FRF LD S SRL+
Sbjct: 188 FCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRLE 224
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 78/156 (50%), Gaps = 34/156 (21%)
Query: 97 TLLVSRVEKY---------RPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAA 147
T L VEKY RP TLD++ S + I+ ++ L+ S++ + L
Sbjct: 32 TRLQPWVEKYGIANPGIPSRPKTLDDVASQEHTITVLQ--------RTLQASNLPHMLFY 83
Query: 148 GTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS-- 201
G + S ++A F + +LELNASD+RGI IVR++I FA + H
Sbjct: 84 GPPGTGKTSTILALSKSLFGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPVS 143
Query: 202 -----------SYKLIILDEADAMTNDAQNALRRKL 226
+K+IILDEAD+MT DAQ+ALRR +
Sbjct: 144 DTAYCEKYPCPPFKIIILDEADSMTQDAQSALRRTM 179
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 54/83 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF LD S SRL+ + EK+ +
Sbjct: 179 MERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRLEEIARVEKLRLADGC 238
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ +I S+GD+R+ + +QSAA
Sbjct: 239 IETLIRCSEGDLRRAITFMQSAA 261
>gi|336272567|ref|XP_003351040.1| hypothetical protein SMAC_04344 [Sordaria macrospora k-hell]
gi|380090807|emb|CCC04977.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 387
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 104/154 (67%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR+
Sbjct: 56 LQRTLQATNLPHMLFYGPPGTGKTSTILALAKELYGPELIKSRVLELNASDERGISIVRE 115
Query: 357 QIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + + S+ +K+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 116 KVKDFARMQLTNPSAAYKARYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCL 175
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF LD RL+
Sbjct: 176 ICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLE 209
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL ++ + I+ ++ L+ +++ + L G + S ++A
Sbjct: 35 VEKYRPKTLSDVTAQDHTITVLQ--------RTLQATNLPHMLFYGPPGTGKTSTILALA 86
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR+++ FA + + S+ +K+IIL
Sbjct: 87 KELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPPFKIIIL 146
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 147 DEADSMTQDAQSALRRTM 164
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD RL+ + + E V +
Sbjct: 164 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGA 223
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+RK + LQSAA
Sbjct: 224 VDALIKCSEGDLRKAITYLQSAA 246
>gi|344282143|ref|XP_003412834.1| PREDICTED: replication factor C subunit 4 [Loxodonta africana]
Length = 373
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 126/207 (60%), Gaps = 15/207 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F + VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRSRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKSFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL RL + +++ N I Y I + E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKTQQQRLLDIAEKENVKITNEGIAYLINVSEGDLRKA 241
Query: 465 LALTDILTEISLLVHRLEIPESMLVDL 491
+ L + L E+ E +++D+
Sbjct: 242 ITF---LQSATRLTAGKEVTEKVIMDI 265
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 104/212 (49%), Gaps = 38/212 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL RL + E+E V +T +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKTQQQRLLDIAEKENVKITNEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD-EVNE---------------DTIFTLLVSR-- 102
+I++S+GD+RK + LQSA A EV E D IF + S
Sbjct: 227 IAYLINVSEGDLRKAITFLQSATRLTAGKEVTEKVIMDIAGVIPAETIDGIFAVCQSGSF 286
Query: 103 ----------VEKYRPSTLDELVS--HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+++ P+T +LV+ H ++ + + + K+++++ LA G
Sbjct: 287 DKLEAVVKDLIDEGHPAT--QLVNQFHDVVVENHHLSDKQKSVITEKLAEVDQCLADGAD 344
Query: 151 EKIQLSALIAAFNSARDKLEVLELNASDDRGI 182
E +QL +L A ++ L N S +RG+
Sbjct: 345 EHLQLISLCATV------MQQLTQNCSTERGL 370
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 113/271 (41%), Gaps = 74/271 (27%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKRVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F + VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRSRVLELNASDERGIQVVREKVKSFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL---------------------PVTP----------------- 230
DEAD+MT+ AQ ALRR + P+T
Sbjct: 150 DEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKTQQQ 209
Query: 231 ---------------DGKKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTVYNSVGYP 274
+G +I++S+GD+RK + LQSA A EV E + + G
Sbjct: 210 RLLDIAEKENVKITNEGIAYLINVSEGDLRKAITFLQSATRLTAGKEVTEKVIMDIAGVI 269
Query: 275 TKTEITNILRWLLNESMD-LCYKINRFIDEN 304
I I + S D L + IDE
Sbjct: 270 PAETIDGIFAVCQSGSFDKLEAVVKDLIDEG 300
>gi|379003246|ref|YP_005258918.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375158699|gb|AFA38311.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 322
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 99/146 (67%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ +PHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGI ++R
Sbjct: 27 RLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGINVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S I
Sbjct: 86 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYISGII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSR RF PL + +RL Y
Sbjct: 146 EPIQSRTVMIRFSPLPKEAVFARLRY 171
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 63/224 (28%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP + DE+V +++ ++ L + V M + + GT + L
Sbjct: 8 EKYRPRSFDEVVDLEEV-------KARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARE 60
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ A
Sbjct: 61 LYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQA 120
Query: 222 LRR-----------------------------------KLP------------------V 228
LRR LP +
Sbjct: 121 LRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGVKI 180
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVG 272
T D +AI + + GDMR+ +N LQ AAT E+ E+TV ++G
Sbjct: 181 TDDALEAIYEFTQGDMRRAINALQIAATT-GKEITEETVAKALG 223
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S I IQSR RF PL + +RL Y+ + E V +T D
Sbjct: 125 MEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGVKITDDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
+AI + + GDMR+ +N LQ AAT E+ E+T+
Sbjct: 185 LEAIYEFTQGDMRRAINALQIAATT-GKEITEETV 218
>gi|354492255|ref|XP_003508264.1| PREDICTED: replication factor C subunit 4 [Cricetulus griseus]
gi|344245879|gb|EGW01983.1| Replication factor C subunit 4 [Cricetulus griseus]
Length = 362
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 145/245 (59%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 60 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 119
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 120 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 179
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWYIKIQEIKIEKGL 465
Y+S+I + SRC++FRF PL + RL + +++ + +I Y+ +K+ +G
Sbjct: 180 YVSRIIEPLTSRCSKFRFKPLSDKIQRERLLDIAEKENVKISHEVIAYL----VKVSEG- 234
Query: 466 ALTDILTEISLL--VHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
D+ I+ L RL + ++ D++ +DI + A T + I + +F
Sbjct: 235 ---DLRKAITFLQSATRLTGGKEVMRDVI---TDIAGVIPATTIDGIFTACQSGSF---- 284
Query: 524 DKLEA 528
DKLEA
Sbjct: 285 DKLEA 289
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 36 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 87
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 88 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 147
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 148 DEADSMTSAAQAALRRTM 165
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + E+E V ++ +
Sbjct: 165 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQRERLLDIAEKENVKISHEV 224
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA EV D I
Sbjct: 225 IAYLVKVSEGDLRKAITFLQSATRLTGGKEVMRDVI 260
>gi|115384904|ref|XP_001208999.1| activator 1 41 kDa subunit [Aspergillus terreus NIH2624]
gi|114196691|gb|EAU38391.1| activator 1 41 kDa subunit [Aspergillus terreus NIH2624]
Length = 319
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 104/146 (71%), Gaps = 13/146 (8%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH 368
+LFYGPPGTGKT+TILA A+ L+ + + + +LELNASD+RGIGIVRD+I FA ++ H
Sbjct: 1 MLFYGPPGTGKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVRDKIKNFARSQLSH 60
Query: 369 KSS-------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
S +K+IILDEAD+MT DAQ+ALRR +E+++ RFC++CNY+++I
Sbjct: 61 SSGMSEEYLAQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRII 120
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF LD+S RL++
Sbjct: 121 DPLASRCSKFRFKALDNSAAGERLEH 146
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 57/93 (61%), Gaps = 14/93 (15%)
Query: 148 GTSEKIQLSALIAA-FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---- 202
GT + + AL + F + + +LELNASD+RGIGIVRD+I FA ++ H S
Sbjct: 8 GTGKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVRDKIKNFARSQLSHSSGMSEE 67
Query: 203 ---------YKLIILDEADAMTNDAQNALRRKL 226
+K+IILDEAD+MT DAQ+ALRR +
Sbjct: 68 YLAQYPCPPFKIIILDEADSMTQDAQSALRRTM 100
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF LD+S RL+++ + E + +
Sbjct: 100 MEQYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDNSAAGERLEHIAKLENLTLESGV 159
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+I S+GD+R+ + +QSAA
Sbjct: 160 VDKLIQCSEGDLRRAITYMQSAA 182
>gi|367042572|ref|XP_003651666.1| hypothetical protein THITE_2112208 [Thielavia terrestris NRRL 8126]
gi|346998928|gb|AEO65330.1| hypothetical protein THITE_2112208 [Thielavia terrestris NRRL 8126]
Length = 383
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 106/154 (68%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR+
Sbjct: 58 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVRE 117
Query: 357 QIFQFASTKTM-----HKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA T+ +K+ Y K+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 118 KVKDFARTQLTNPPPGYKARYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCL 177
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF LD RL+
Sbjct: 178 ICNYVTRIIDPLASRCSKFRFKSLDQGNARRRLE 211
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 77/138 (55%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL ++ + +S ++ L+ S++ + L G + S ++A
Sbjct: 37 VEKYRPKTLSDVTAQDHTVSVLQ--------RTLQASNLPHMLFYGPPGTGKTSTILALA 88
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTM-----HKSSY-----KLIIL 208
+ K VLELNASD+RGI IVR+++ FA T+ +K+ Y K+IIL
Sbjct: 89 KELYGPELMKSRVLELNASDERGISIVREKVKDFARTQLTNPPPGYKARYPCPPFKIIIL 148
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 149 DEADSMTQDAQSALRRTM 166
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD RL+ + E V +
Sbjct: 166 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARRRLEEIARLEGVGMEDGA 225
Query: 61 KKAIIDLSDGDMRKVLNILQSAA------TAHADEVNED 93
A+I SDGD+RK + LQSAA +A +D +ED
Sbjct: 226 VDALIKCSDGDLRKAITFLQSAARLVGASSAGSDGKDED 264
>gi|226492916|ref|NP_001148581.1| replication factor C subunit 2 [Zea mays]
gi|195620566|gb|ACG32113.1| replication factor C subunit 2 [Zea mays]
Length = 339
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 101/150 (67%), Gaps = 7/150 (4%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+N + +LPH+LFYGPPGTGKTTT LA A +LY + + VLELNASDDRGI +VR
Sbjct: 33 LNNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPELYKSRVLELNASDDRGINVVRT 92
Query: 357 QIFQFASTK--TMHKSS-----YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+I FA+ T K+ YK+IILDEAD+MT DAQNALRR E ++ RF ICN
Sbjct: 93 KIKNFAAVAVGTARKAGYPCPPYKIIILDEADSMTEDAQNALRRTTETYSKVTRFFFICN 152
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC +FRF PL ++ SR+
Sbjct: 153 YISRIIEPLASRCAKFRFKPLSEEVMSSRI 182
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 19/133 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + ++ +++I +++ L+ +D+ + L G + + +A
Sbjct: 12 VEKYRPRQVKDVAHQEEVIR--------VLNNTLQTADLPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK--TMHKSSY-----KLIILDEA 211
+ K VLELNASDDRGI +VR +I FA+ T K+ Y K+IILDEA
Sbjct: 64 YQLYGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGTARKAGYPCPPYKIIILDEA 123
Query: 212 DAMTNDAQNALRR 224
D+MT DAQNALRR
Sbjct: 124 DSMTEDAQNALRR 136
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%)
Query: 2 EKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGK 61
E ++ RF ICNY+S+I + SRC +FRF PL ++ SR+ ++ +E +N+
Sbjct: 139 ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRIMHICNEEGLNLNAQAM 198
Query: 62 KAIIDLSDGDMRKVLNILQSAA 83
+ +S GD+R+ + LQSAA
Sbjct: 199 STLSVISQGDLRRAITYLQSAA 220
>gi|444315800|ref|XP_004178557.1| hypothetical protein TBLA_0B01950 [Tetrapisispora blattae CBS 6284]
gi|387511597|emb|CCH59038.1| hypothetical protein TBLA_0B01950 [Tetrapisispora blattae CBS 6284]
Length = 350
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 103/147 (70%), Gaps = 10/147 (6%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA-- 362
LPH+LFYGPPGTGKT+TILA ++LY N+ +LELNASD+RGI IVR +I FA
Sbjct: 51 NLPHMLFYGPPGTGKTSTILAMTKELYGPNLINSRILELNASDERGINIVRKKIKNFAKL 110
Query: 363 -----STKTMHK---SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
S + K YK+IILDEAD+MT+DAQ+ALRR +EK++ RFC+ICNY+++I
Sbjct: 111 IISKPSKDDLEKYPCPPYKIIILDEADSMTSDAQSALRRTMEKYSNITRFCLICNYVTRI 170
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRCT+FRF L++ + RL +
Sbjct: 171 IDPLASRCTKFRFKSLNNDNAIERLKF 197
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 100/196 (51%), Gaps = 40/196 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNV---- 56
+EK++ RFC+ICNY+++I + SRCT+FRF L++ + RL ++ + E +NV
Sbjct: 151 MEKYSNITRFCLICNYVTRIIDPLASRCTKFRFKSLNNDNAIERLKFISKNENLNVENDE 210
Query: 57 -TPDGKKAIIDLSDGDMRKVLNILQSAA---------TAHADE---VNEDTIFTLLVSRV 103
D K ++ +++GD+R+ + +LQSA+ +A DE + D + T LV ++
Sbjct: 211 INNDFYKNLLQIANGDLRRSITLLQSASNFSLDGPITSARIDELAGIVPDVVITNLVDKI 270
Query: 104 EKYRPSTLDELV--SHQDIISTIEIPESMLVDL------------------VLKMSDIEY 143
L+E++ ++ +I+ ++++ L + DI+
Sbjct: 271 SN---KNLNEIIEFTNNNIVKLGYSASAVILQLHDYYIINSNSDTKFKNNVSYLLFDIDS 327
Query: 144 RLAAGTSEKIQLSALI 159
+L G++E IQL L+
Sbjct: 328 KLTNGSNENIQLITLL 343
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 75/138 (54%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +LD++ S +S ++ L+ S++ + L G + S ++A
Sbjct: 22 VEKYRPKSLDDVYSQDHTVSVLKKN--------LQTSNLPHMLFYGPPGTGKTSTILAMT 73
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA-------STKTMHK---SSYKLIIL 208
+ +LELNASD+RGI IVR +I FA S + K YK+IIL
Sbjct: 74 KELYGPNLINSRILELNASDERGINIVRKKIKNFAKLIISKPSKDDLEKYPCPPYKIIIL 133
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+DAQ+ALRR +
Sbjct: 134 DEADSMTSDAQSALRRTM 151
>gi|281209849|gb|EFA84017.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 357
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 104/154 (67%), Gaps = 9/154 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R ++ LPHLLFYGPPGTGKT+TILA A L+ + VLELNASD+RGI +VR
Sbjct: 39 LKRSLETGNLPHLLFYGPPGTGKTSTILAVAMDLFGPELYKDRVLELNASDERGIEVVRT 98
Query: 357 QIFQFAS---------TKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII 407
+I FAS T +++KLI+LDEAD+MT+DAQ ALRRIIE + RFC++
Sbjct: 99 KIKNFASFSVSQNNTLTNGKPAAAFKLIVLDEADSMTHDAQAALRRIIEYTSKTTRFCLL 158
Query: 408 CNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
CNY+++I + SRC +FRF L+ + ++ RL Y
Sbjct: 159 CNYITRIIEPLSSRCAKFRFKSLNDTAMIERLRY 192
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 83/148 (56%), Gaps = 21/148 (14%)
Query: 90 VNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGT 149
N++T + + V KYRP T+DE VSHQD E+ +++ L+ ++ + L G
Sbjct: 5 TNQNTPYRPVEPWVNKYRPKTVDE-VSHQD-----EVVKAL--KRSLETGNLPHLLFYGP 56
Query: 150 SEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS---------TK 196
+ S ++A F K VLELNASD+RGI +VR +I FAS T
Sbjct: 57 PGTGKTSTILAVAMDLFGPELYKDRVLELNASDERGIEVVRTKIKNFASFSVSQNNTLTN 116
Query: 197 TMHKSSYKLIILDEADAMTNDAQNALRR 224
+++KLI+LDEAD+MT+DAQ ALRR
Sbjct: 117 GKPAAAFKLIVLDEADSMTHDAQAALRR 144
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 29/184 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE + RFC++CNY+++I + SRC +FRF L+ + ++ RL Y+ E + D
Sbjct: 146 IEYTSKTTRFCLLCNYITRIIEPLSSRCAKFRFKSLNDTAMIERLRYIASSESMPPVKDE 205
Query: 61 -KKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTIFT--------LLVSRVEKYRPST 110
+AI +SDGD+RK + LQS+ + E+ D I+ L+ + + + ++
Sbjct: 206 VYQAIHAVSDGDLRKAITYLQSSYRFYGSRELTPDNIYNISGTVPPKLIETLINTCKSNS 265
Query: 111 LDELVSHQDIISTIEIPESMLVD-------------------LVLKMSDIEYRLAAGTSE 151
D+L S+ + T P S ++ + +K+ D++ L G+ E
Sbjct: 266 YDKLQSNLQQLVTKGYPASQILVQIFDQVTNHKSFSDKQKALIAMKIGDVDRNLVDGSEE 325
Query: 152 KIQL 155
+QL
Sbjct: 326 FLQL 329
>gi|171186449|ref|YP_001795368.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170935661|gb|ACB40922.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 328
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 102/146 (69%), Gaps = 2/146 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ +PHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGI ++R
Sbjct: 27 RLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGINVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S+I
Sbjct: 86 ERVKEFARTAPI-KAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRII 144
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
I SRC FRF P+ SL+ RL Y
Sbjct: 145 DPIISRCAVFRFSPMPRSLMAERLKY 170
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 28/191 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S+I I SRC FRF P+ SL+ RL Y+ ++E + V D
Sbjct: 124 MEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKYIAKREGIEVGEDA 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDT--------------IFTL------LV 100
I +LS+GDMRK +N+LQ AA + +F L L
Sbjct: 184 LDLIYELSEGDMRKAINLLQVAAATNKVVDANAVAAAAAAVKPSDILELFNLALGGDYLK 243
Query: 101 SRVEKYRPSTLDELVSHQDIIST-----IEIP--ESMLVDLVLKMSDIEYRLAAGTSEKI 153
+R EK R + V+ D I I +P + + ++ ++D++YRL G E+I
Sbjct: 244 AR-EKLRELMYIKGVAGVDFIRAFQRELIRMPLDDDLKAEIAELLADVDYRLTQGADEEI 302
Query: 154 QLSALIAAFNS 164
Q++ L+A S
Sbjct: 303 QMAYLLAKLGS 313
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 92/210 (43%), Gaps = 63/210 (30%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP + DE+V +++ +S L + V M + + GT + L
Sbjct: 8 EKYRPRSFDEVVDLEEV-------KSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARE 60
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ A
Sbjct: 61 LYGEYWRENTLELNASDERGINVIRERVKEFARTAPI-KAPFKLVILDEADNMTSDAQQA 119
Query: 222 LRRKLPVTPDGKKAII-------------------------------------------- 237
LRR + + + I+
Sbjct: 120 LRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKYIAKREGIEV 179
Query: 238 ---------DLSDGDMRKVLNILQSAATAH 258
+LS+GDMRK +N+LQ AA +
Sbjct: 180 GEDALDLIYELSEGDMRKAINLLQVAAATN 209
>gi|159041324|ref|YP_001540576.1| ATPase central domain-containing protein [Caldivirga maquilingensis
IC-167]
gi|157920159|gb|ABW01586.1| AAA ATPase central domain protein [Caldivirga maquilingensis
IC-167]
Length = 318
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/140 (52%), Positives = 98/140 (70%), Gaps = 1/140 (0%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
F+ +LPHLLFYGPPG GKTT LA AR+LY + + + VLELNASD+RGI ++R+++
Sbjct: 25 FVRRGDLPHLLFYGPPGVGKTTAALALARELYGDS-WRSSVLELNASDERGIDVIREKVK 83
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
+FA T +KL+ILDEAD MT+DAQ ALRRI+E + + RF ++ NY+S I IQ
Sbjct: 84 EFARTIPTGPVPFKLVILDEADNMTSDAQQALRRIMEMYASTTRFILLANYISGIIEPIQ 143
Query: 420 SRCTRFRFGPLDSSLIMSRL 439
SRC FRF PL ++ RL
Sbjct: 144 SRCAIFRFNPLPKEAVIERL 163
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 111/245 (45%), Gaps = 71/245 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+E++RP L +LV + + + L++ V + D+ + L G + AA
Sbjct: 1 MERFRPVRLVDLVDQEGV-------KVGLMEFV-RRGDLPHLLFYGPP---GVGKTTAAL 49
Query: 163 NSARD------KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
AR+ + VLELNASD+RGI ++R+++ +FA T +KL+ILDEAD MT+
Sbjct: 50 ALARELYGDSWRSSVLELNASDERGIDVIREKVKEFARTIPTGPVPFKLVILDEADNMTS 109
Query: 217 DAQNALRR-----------------------------------KLP-------------- 227
DAQ ALRR LP
Sbjct: 110 DAQQALRRIMEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLRQIAKE 169
Query: 228 ----VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
VT DG +AI ++S GDMRK +N LQ+ T + +V+E+ VY G E+ +++
Sbjct: 170 TGVEVTEDGLEAIWEVSQGDMRKAINTLQTTTTTN-KKVDENAVYQLFGGINPQEVRDLI 228
Query: 284 RWLLN 288
LN
Sbjct: 229 YEALN 233
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 1/99 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + + RF ++ NY+S I IQSRC FRF PL ++ RL + ++ V VT DG
Sbjct: 119 MEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLRQIAKETGVEVTEDG 178
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL 99
+AI ++S GDMRK +N LQ+ T + +V+E+ ++ L
Sbjct: 179 LEAIWEVSQGDMRKAINTLQTTTTTN-KKVDENAVYQLF 216
>gi|194700788|gb|ACF84478.1| unknown [Zea mays]
gi|194706416|gb|ACF87292.1| unknown [Zea mays]
gi|413916289|gb|AFW56221.1| replication factor C subunit 2 [Zea mays]
Length = 339
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 101/150 (67%), Gaps = 7/150 (4%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+N + +LPH+LFYGPPGTGKTTT LA A +LY + + VLELNASDDRGI +VR
Sbjct: 33 LNNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPELYKSRVLELNASDDRGINVVRT 92
Query: 357 QIFQFASTK--TMHKSS-----YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+I FA+ T K+ YK+IILDEAD+MT DAQNALRR E ++ RF ICN
Sbjct: 93 KIKNFAAVAVGTARKAGYPCPPYKIIILDEADSMTEDAQNALRRTTETYSKVTRFFFICN 152
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC +FRF PL ++ SR+
Sbjct: 153 YISRIIEPLASRCAKFRFKPLSEEVMSSRI 182
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 19/133 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + ++ +++I +++ L+ +D+ + L G + + +A
Sbjct: 12 VEKYRPRQVKDVAHQEEVIR--------VLNNTLQTADLPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK--TMHKSSY-----KLIILDEA 211
+ K VLELNASDDRGI +VR +I FA+ T K+ Y K+IILDEA
Sbjct: 64 YQLYGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGTARKAGYPCPPYKIIILDEA 123
Query: 212 DAMTNDAQNALRR 224
D+MT DAQNALRR
Sbjct: 124 DSMTEDAQNALRR 136
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%)
Query: 2 EKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGK 61
E ++ RF ICNY+S+I + SRC +FRF PL ++ SR+ ++ +E +N+
Sbjct: 139 ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRIMHICNEEGLNLNAQAM 198
Query: 62 KAIIDLSDGDMRKVLNILQSAA 83
+ +S GD+R+ + LQSAA
Sbjct: 199 STLSVISQGDLRRAITYLQSAA 220
>gi|145592047|ref|YP_001154049.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514167|sp|A4WLY0.1|RFCS2_PYRAR RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|145283815|gb|ABP51397.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
Length = 322
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 99/146 (67%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ +PHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGI ++R
Sbjct: 27 RLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGINVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S I
Sbjct: 86 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYISGII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSR RF PL + +RL Y
Sbjct: 146 EPIQSRTVMIRFSPLPKEAVFARLRY 171
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 101/224 (45%), Gaps = 63/224 (28%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP + DE+V +++ ++ L + V M + + GT + L
Sbjct: 8 EKYRPRSFDEVVDLEEV-------KARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARE 60
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ A
Sbjct: 61 LYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQA 120
Query: 222 LRR-----------------------------------KLP------------------V 228
LRR LP +
Sbjct: 121 LRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGVKI 180
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVG 272
+ D +AI + + GDMR+ +N LQ AAT E+ E+TV ++G
Sbjct: 181 SDDALEAIYEFTQGDMRRAINALQIAATT-GKEITEETVAKALG 223
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S I IQSR RF PL + +RL Y+ + E V ++ D
Sbjct: 125 MEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGVKISDDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
+AI + + GDMR+ +N LQ AAT E+ E+T+
Sbjct: 185 LEAIYEFTQGDMRRAINALQIAATT-GKEITEETV 218
>gi|156383785|ref|XP_001633013.1| predicted protein [Nematostella vectensis]
gi|156220077|gb|EDO40950.1| predicted protein [Nematostella vectensis]
Length = 357
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 101/150 (67%), Gaps = 7/150 (4%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+LY VLELNASD+RGI ++RD
Sbjct: 55 LKKSLEGADLPNLLFYGPPGTGKTSTILAVARELYGHEMLKQRVLELNASDERGIQVIRD 114
Query: 357 QIFQFASTKTMHK-------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ F+ +KL+ILDEAD+MT AQ ALRR +EK T RFC+ICN
Sbjct: 115 KVKTFSQLSASASRPDGKPCPPFKLVILDEADSMTPSAQAALRRTMEKQTKTTRFCLICN 174
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC++FRF PL S ++ RL
Sbjct: 175 YVSRIIEPLTSRCSKFRFKPLSSEILERRL 204
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK T RFC+ICNY+S+I + SRC++FRF PL S ++ RL + +E+VN
Sbjct: 160 MEKQTKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSSEILERRLKEICVKEEVNCEDKA 219
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE--VNEDTI 95
+I +S+GDMRK + LQSA D V ED I
Sbjct: 220 IDEVIKISEGDMRKAITFLQSAHRLKGDSGIVAEDII 256
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 106/260 (40%), Gaps = 79/260 (30%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +D++ ++++ M++ L+ +D+ L G + S ++A
Sbjct: 34 VEKYRPKCVDDVAQQEEVV--------MVLKKSLEGADLPNLLFYGPPGTGKTSTILAVA 85
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-------SSYKLIILDEA 211
+ K VLELNASD+RGI ++RD++ F+ +KL+ILDEA
Sbjct: 86 RELYGHEMLKQRVLELNASDERGIQVIRDKVKTFSQLSASASRPDGKPCPPFKLVILDEA 145
Query: 212 DAMTNDAQNALRRKL---------------------PVTPDGKK---------------- 234
D+MT AQ ALRR + P+T K
Sbjct: 146 DSMTPSAQAALRRTMEKQTKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSSEILERRLK 205
Query: 235 ----------------AIIDLSDGDMRKVLNILQSAATAHADE--VNEDTVYNSVGYPTK 276
+I +S+GDMRK + LQSA D V ED + + P
Sbjct: 206 EICVKEEVNCEDKAIDEVIKISEGDMRKAITFLQSAHRLKGDSGIVAEDIIEIAGAIP-- 263
Query: 277 TEITNILRWLLNESMDLCYK 296
N+++ L + S Y+
Sbjct: 264 ---DNLIKSLFDASRSDSYQ 280
>gi|74150977|dbj|BAE27622.1| unnamed protein product [Mus musculus]
Length = 370
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 138/245 (56%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL + +++ N I Y +KI E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKA 241
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR- 523
+ L + L E+ E ++ D+ AG + + A +S
Sbjct: 242 ITF---LQSATRLTGGKEVSEDVITDI------------AGVIPAATIDGIFTACHSGSF 286
Query: 524 DKLEA 528
DKLEA
Sbjct: 287 DKLEA 291
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + E+E V + +
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEE 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA EV+ED I
Sbjct: 227 IAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVI 262
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ ++++ + L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQDEVVAVLRKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 150 DEADSMTSAAQAALRRTM 167
>gi|326482375|gb|EGE06385.1| DNA replication factor C subunit Rfc2 [Trichophyton equinum CBS
127.97]
Length = 386
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 78/155 (50%), Positives = 107/155 (69%), Gaps = 12/155 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYG PGTGKT+TILA ++ L+ A + VLELNASD+RGI IVR+
Sbjct: 57 LQRNLHASNLPHMLFYGSPGTGKTSTILAMSKSLFGPALVRSRVLELNASDERGINIVRE 116
Query: 357 QIFQFA-------STKTMHKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRF 404
+I FA T ++S Y K+IILDEAD+MT+DAQ+ALRR +EK++ RF
Sbjct: 117 KIKDFARMHLSQPPTDPAYRSQYPCPPFKIIILDEADSMTHDAQSALRRTMEKYSRITRF 176
Query: 405 CIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
C++CNY+++I + SRC++FRF LD S SRL
Sbjct: 177 CLVCNYVTRIIDPVASRCSKFRFKVLDGSAAQSRL 211
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 79/140 (56%), Gaps = 24/140 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TLD++ + IS ++ L S++ + L G+ + S ++A
Sbjct: 36 VEKYRPKTLDDVTAQDHTISVLQ--------RNLHASNLPHMLFYGSPGTGKTSTILAMS 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA-------STKTMHKSSY-----KLI 206
F A + VLELNASD+RGI IVR++I FA T ++S Y K+I
Sbjct: 88 KSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPTDPAYRSQYPCPPFKII 147
Query: 207 ILDEADAMTNDAQNALRRKL 226
ILDEAD+MT+DAQ+ALRR +
Sbjct: 148 ILDEADSMTHDAQSALRRTM 167
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RFC++CNY+++I + SRC++FRF LD S SRL + EK+++ +
Sbjct: 167 MEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKVLDGSAAQSRLIEIARMEKLDLEDNV 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++ SDGD+RK + +QS+A
Sbjct: 227 VETLLRCSDGDLRKAITFMQSSA 249
>gi|327282022|ref|XP_003225743.1| PREDICTED: replication factor C subunit 4-like [Anolis
carolinensis]
Length = 364
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 142/245 (57%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI ++R+
Sbjct: 63 LKKCLQGADLPNLLFYGPPGTGKTSTILAAARELFGTELFRQRVLELNASDERGIQVIRE 122
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ +FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 123 KVKRFAQLTVSGSRSDGKLCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 182
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I I SRC++FRF PL + RL + ++++ + I Y + + E + K
Sbjct: 183 YISRIIEPITSRCSKFRFKPLSDKIQRQRLVEVAEKENVAVSSEAISYLVHVSEGDLRKA 242
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR- 523
+ L L + L+ E+ E ++ ++ AG + L ++A+ S
Sbjct: 243 ITL---LQSATRLMGGKEVTEKIVTEI------------AGVIPREMLDGVLASCQSGSF 287
Query: 524 DKLEA 528
+KLEA
Sbjct: 288 EKLEA 292
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 54/82 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I I SRC++FRF PL + RL V E+E V V+ +
Sbjct: 168 MEKESKTTRFCLICNYISRIIEPITSRCSKFRFKPLSDKIQRQRLVEVAEKENVAVSSEA 227
Query: 61 KKAIIDLSDGDMRKVLNILQSA 82
++ +S+GD+RK + +LQSA
Sbjct: 228 ISYLVHVSEGDLRKAITLLQSA 249
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 76/135 (56%), Gaps = 19/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++AA
Sbjct: 42 VEKYRPKCMDEVAFQEEVVAVLK--------KCLQGADLPNLLFYGPPGTGKTSTILAAA 93
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIILDEA 211
F + + VLELNASD+RGI ++R+++ +FA S +K++ILDEA
Sbjct: 94 RELFGTELFRQRVLELNASDERGIQVIREKVKRFAQLTVSGSRSDGKLCPPFKIVILDEA 153
Query: 212 DAMTNDAQNALRRKL 226
D+MT+ AQ ALRR +
Sbjct: 154 DSMTSAAQAALRRTM 168
>gi|299117347|emb|CBN75303.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 354
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 75/144 (52%), Positives = 99/144 (68%), Gaps = 8/144 (5%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST- 364
LPHLLFYGPPGTGKT+T LA AR L+ + +LELNASD+RGI +VR++I FA
Sbjct: 61 LPHLLFYGPPGTGKTSTALALARTLFGPDTYRDRILELNASDERGIKVVREKIKTFAQVA 120
Query: 365 --KTMHKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
+ H++ Y K+IILDEAD MT DAQ+ALRR +E ++T RFC+ICNY+++I
Sbjct: 121 VGRATHQAGYPCPPFKVIILDEADTMTPDAQSALRRTMETYSTVTRFCLICNYVTRIIEP 180
Query: 418 IQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC +FRF L ++ RL Y
Sbjct: 181 LASRCAKFRFSALGQGAMLDRLSY 204
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 58/87 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++T RFC+ICNY+++I + SRC +FRF L ++ RL Y+ +E V + DG
Sbjct: 158 METYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISREEDVKIAADG 217
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA 87
+AI+DLS GDMRK + +QSA+ +A
Sbjct: 218 LQAIVDLSGGDMRKAVTAMQSASQFYA 244
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 79/135 (58%), Gaps = 18/135 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTI---EIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
VEKYRP T+D+ V+HQD ++ I +L L+ + TS + L+ +
Sbjct: 31 VEKYRPKTVDD-VAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGK----TSTALALARTL 85
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFAST---KTMHKSSY-----KLIILDEA 211
++ RD+ +LELNASD+RGI +VR++I FA + H++ Y K+IILDEA
Sbjct: 86 FGPDTYRDR--ILELNASDERGIKVVREKIKTFAQVAVGRATHQAGYPCPPFKVIILDEA 143
Query: 212 DAMTNDAQNALRRKL 226
D MT DAQ+ALRR +
Sbjct: 144 DTMTPDAQSALRRTM 158
>gi|346321024|gb|EGX90624.1| activator 1 41 kDa subunit [Cordyceps militaris CM01]
Length = 382
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 103/154 (66%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVRD
Sbjct: 57 LQRTLQAANLPHMLFYGPPGTGKTSTILALAKQLYGPEMMKSRVLELNASDERGISIVRD 116
Query: 357 QIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + + + +K+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 117 KVKNFARMQLTNPPAGYRDKYPCPPFKIIILDEADSMTQDAQSALRRTMEIYSKITRFCL 176
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF LD RL+
Sbjct: 177 ICNYVTRIIDPLASRCSKFRFKSLDQGSAKKRLE 210
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 22/140 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +LD++ + + ++ ++ L+ +++ + L G + S ++A
Sbjct: 36 VEKYRPKSLDDIAAQEHTVTVLQ--------RTLQAANLPHMLFYGPPGTGKTSTILALA 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVRD++ FA + + + +K+IIL
Sbjct: 88 KQLYGPEMMKSRVLELNASDERGISIVRDKVKNFARMQLTNPPAGYRDKYPCPPFKIIIL 147
Query: 209 DEADAMTNDAQNALRRKLPV 228
DEAD+MT DAQ+ALRR + +
Sbjct: 148 DEADSMTQDAQSALRRTMEI 167
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 14/130 (10%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD RL+ + E V V
Sbjct: 165 MEIYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGSAKKRLEEIATAESVPVDDGA 224
Query: 61 KKAIIDLSDGDMRKVLNILQSAA---TAHAD----------EVNEDTIFTLLVSRVEKYR 107
A+I S+GD+RK + LQSAA A A EV++ I ++ +
Sbjct: 225 IDALIRCSEGDLRKAVTFLQSAARLVGAGAQPKDSDGDDDMEVDKKAITVKIIEDIAGVI 284
Query: 108 PS-TLDELVS 116
PS T+DELV+
Sbjct: 285 PSKTIDELVA 294
>gi|342876153|gb|EGU77811.1| hypothetical protein FOXB_11675 [Fusarium oxysporum Fo5176]
Length = 382
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 74/154 (48%), Positives = 105/154 (68%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+T+LA A++LY + VLELNASD+RGI IVR+
Sbjct: 57 LQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPDMIKSRVLELNASDERGISIVRE 116
Query: 357 QIFQFASTKTMHKS----------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + + + +K+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 117 KVKNFARMQLTNPAPGYKDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCL 176
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF LD S RL+
Sbjct: 177 ICNYVTRIIDPLASRCSKFRFKSLDQSNAKRRLE 210
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 49/204 (24%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD S RL+ + E+E V +
Sbjct: 165 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQSNAKRRLEEIAEKEGVALEDGA 224
Query: 61 KKAIIDLSDGDMRKVLNILQSAA----------TAHADE---VNEDTIFTLLVSRVEKYR 107
A+I S+GD+RK + LQSAA A DE V++ + +V +
Sbjct: 225 VDALIKCSEGDLRKAITFLQSAARLVSANAPDKEAEGDEVMDVDKKAVTVKIVEDIAGVI 284
Query: 108 P-STLDELV----------SHQDIISTIE-------------------------IPESML 131
P +T+D+LV S+Q I +E IP++
Sbjct: 285 PDTTIDDLVKAIRPKRSGSSYQIISDVVEKLVADGWSAGQVVNQLYQALTYDETIPDAQK 344
Query: 132 VDLVLKMSDIEYRLAAGTSEKIQL 155
+VL S+++ RL G E + +
Sbjct: 345 NKIVLVFSEVDKRLVDGADEHLSI 368
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL ++ + + ++ L+ S++ + L G + S ++A
Sbjct: 36 VEKYRPKTLSDVTAQDHTVDVLQ--------RTLQSSNLPHMLFYGPPGTGKTSTVLALA 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR+++ FA + + + +K+IIL
Sbjct: 88 KELYGPDMIKSRVLELNASDERGISIVREKVKNFARMQLTNPAPGYKDKYPCPPFKIIIL 147
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 148 DEADSMTQDAQSALRRTM 165
>gi|168030360|ref|XP_001767691.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681011|gb|EDQ67442.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 338
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 98/147 (66%), Gaps = 6/147 (4%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
++ LPHLLFYGPPGTGKTTT LA +L+ + VLELNASDDRGI +VR +I
Sbjct: 37 LETGNLPHLLFYGPPGTGKTTTALAICHQLFGPELYKTRVLELNASDDRGINVVRTKIKD 96
Query: 361 FASTKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
FA S +K++ILDEAD+MT DAQNALRR +E ++ RFC ICNY+S+I
Sbjct: 97 FAGVAVGAGVSGYPCPPFKVLILDEADSMTEDAQNALRRTMENYSKVTRFCFICNYVSRI 156
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC +FRF PL +++ +R+ Y
Sbjct: 157 IEPLASRCAKFRFKPLLENVMQNRIQY 183
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 58/98 (59%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC ICNY+S+I + SRC +FRF PL +++ +R+ Y+ ++E + + +
Sbjct: 137 MENYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLLENVMQNRIQYICQEEGLKLDQEA 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
+ +S+GD+R+ + LQ A + ++ I ++
Sbjct: 197 LSTLSRVSEGDLRRAITCLQCAVRLYGSNISSKEIISV 234
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 70/134 (52%), Gaps = 18/134 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + ++ ++++ T+ L+ ++ + L G + + +A
Sbjct: 12 VEKYRPRKVKDVAHQEEVVRTLTN--------TLETGNLPHLLFYGPPGTGKTTTALAIC 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------YKLIILDEAD 212
F K VLELNASDDRGI +VR +I FA S +K++ILDEAD
Sbjct: 64 HQLFGPELYKTRVLELNASDDRGINVVRTKIKDFAGVAVGAGVSGYPCPPFKVLILDEAD 123
Query: 213 AMTNDAQNALRRKL 226
+MT DAQNALRR +
Sbjct: 124 SMTEDAQNALRRTM 137
>gi|66808355|ref|XP_637900.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74853593|sp|Q54MD4.1|RFC4_DICDI RecName: Full=Probable replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|60466332|gb|EAL64392.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 103/158 (65%), Gaps = 8/158 (5%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + + ++ LPHLLFYGPPGTGKT+TILA A +Y VLELNASD+RGI
Sbjct: 29 DVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGPELMKQRVLELNASDERGI 88
Query: 352 GIVRDQIFQFAS---TKTMHKSS-----YKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+VR +I FA KT +S +KLIILDEAD+MT DAQ ALRR IE + R
Sbjct: 89 EVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEADSMTTDAQAALRRTIETTSKTTR 148
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
FC++CNY+S+I + SRC +FRF PLD+ + RL +
Sbjct: 149 FCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKF 186
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 27/182 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE + RFC++CNY+S+I + SRC +FRF PLD+ + RL ++ +QE +
Sbjct: 140 IETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFISQQEGIKCEESV 199
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT--------LLVSRVEKYRPSTLD 112
+AI +S+GDMRK + LQSA A++++ED I+ L+ V+ + ++ D
Sbjct: 200 YQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLIKQLVDCCKKNSFD 259
Query: 113 ELVSH-QDII------------------STIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
L S Q II +T ++ +S + +K+ +++ L G+ E +
Sbjct: 260 RLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGNVDRNLIDGSEEFL 319
Query: 154 QL 155
QL
Sbjct: 320 QL 321
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 75/139 (53%), Gaps = 20/139 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
V KYRP T+D++ +D+IS ++ L ++ + L G + S ++A
Sbjct: 13 VAKYRPKTVDDVSYQEDVISALKKS--------LNTGNLPHLLFYGPPGTGKTSTILAIA 64
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS---TKTMHKSS-----YKLIILDE 210
+ K VLELNASD+RGI +VR +I FA KT +S +KLIILDE
Sbjct: 65 MDIYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDE 124
Query: 211 ADAMTNDAQNALRRKLPVT 229
AD+MT DAQ ALRR + T
Sbjct: 125 ADSMTTDAQAALRRTIETT 143
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 234 KAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVG 272
+AI +S+GDMRK + LQSA A++++ED +YN G
Sbjct: 201 QAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAG 239
>gi|242042039|ref|XP_002468414.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
gi|241922268|gb|EER95412.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
Length = 339
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 78/142 (54%), Positives = 99/142 (69%), Gaps = 7/142 (4%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LPH+LFYGPPGTGKTTT LA A +LY + + VLELNASDDRGI +VR +I FA+
Sbjct: 41 DLPHMLFYGPPGTGKTTTALAIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAV 100
Query: 365 K--TMHKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
T K+ Y K+IILDEAD+MT DAQNALRR +E ++ RF ICNY+S+I
Sbjct: 101 AVGTARKAGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 160
Query: 418 IQSRCTRFRFGPLDSSLIMSRL 439
+ SRC +FRF PL ++ SR+
Sbjct: 161 LASRCAKFRFKPLSEEVMSSRI 182
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 73/135 (54%), Gaps = 19/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + ++ +++I + L+ +D+ + L G + + +A
Sbjct: 12 VEKYRPRQVKDVAHQEEVIRVLTN--------TLQTADLPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK--TMHKSSY-----KLIILDEA 211
+ K VLELNASDDRGI +VR +I FA+ T K+ Y K+IILDEA
Sbjct: 64 YQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTARKAGYPCPPYKIIILDEA 123
Query: 212 DAMTNDAQNALRRKL 226
D+MT DAQNALRR +
Sbjct: 124 DSMTEDAQNALRRTM 138
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ SR+ ++ +E +N+
Sbjct: 138 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRIMHICNEEGLNLDAQA 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ +S GD+R+ + LQSAA
Sbjct: 198 LSTLSAISQGDLRRAITYLQSAA 220
>gi|358388819|gb|EHK26412.1| hypothetical protein TRIVIDRAFT_63722 [Trichoderma virens Gv29-8]
Length = 378
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 104/154 (67%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR
Sbjct: 56 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPEMIKSRVLELNASDERGISIVRQ 115
Query: 357 QIFQFASTK-----TMHKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + +K Y K+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 116 KVKDFARMQLTNPPPSYKDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCL 175
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF LD S RL+
Sbjct: 176 ICNYVTRIIDPLASRCSKFRFKSLDQSNAKKRLE 209
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 52/83 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD S RL+ + E E V +
Sbjct: 164 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQSNAKKRLESIAEAEGVTLEDGA 223
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+RK + LQSAA
Sbjct: 224 VDALIKCSEGDLRKAITFLQSAA 246
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 75/138 (54%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +LD++ + ++ ++ L+ S++ + L G + S ++A
Sbjct: 35 VEKYRPKSLDDVTAQDHTVTVLQ--------RTLQASNLPHMLFYGPPGTGKTSTILALA 86
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-----TMHKSSY-----KLIIL 208
+ K VLELNASD+RGI IVR ++ FA + +K Y K+IIL
Sbjct: 87 KELYGPEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPSYKDKYPCPPFKIIIL 146
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 147 DEADSMTQDAQSALRRTM 164
>gi|327292807|ref|XP_003231101.1| DNA replication factor C subunit Rfc2 [Trichophyton rubrum CBS
118892]
gi|326466731|gb|EGD92184.1| DNA replication factor C subunit Rfc2 [Trichophyton rubrum CBS
118892]
Length = 386
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 108/155 (69%), Gaps = 12/155 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R ++ + LPH+LFYG PGTGKT+TILA ++ L+ A + VLELNASD+RGI IVR+
Sbjct: 57 LQRNLNASNLPHMLFYGSPGTGKTSTILAMSKSLFGPALVRSRVLELNASDERGINIVRE 116
Query: 357 QIFQFA-------STKTMHKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRF 404
+I FA +++S Y K+IILDEAD+MT+DAQ+ALRR +EK++ RF
Sbjct: 117 KIKDFARMHLSQPPADPVYRSQYPCPPFKIIILDEADSMTHDAQSALRRTMEKYSRITRF 176
Query: 405 CIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
C++CNY+++I + SRC++FRF LD S SRL
Sbjct: 177 CLVCNYVTRIIDPVASRCSKFRFKVLDGSAAQSRL 211
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 79/140 (56%), Gaps = 24/140 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TLD++ + IS ++ L S++ + L G+ + S ++A
Sbjct: 36 VEKYRPKTLDDVTAQDHTISILQ--------RNLNASNLPHMLFYGSPGTGKTSTILAMS 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA-------STKTMHKSSY-----KLI 206
F A + VLELNASD+RGI IVR++I FA +++S Y K+I
Sbjct: 88 KSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPADPVYRSQYPCPPFKII 147
Query: 207 ILDEADAMTNDAQNALRRKL 226
ILDEAD+MT+DAQ+ALRR +
Sbjct: 148 ILDEADSMTHDAQSALRRTM 167
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RFC++CNY+++I + SRC++FRF LD S SRL + EK+++ +
Sbjct: 167 MEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKVLDGSAAQSRLVEIARMEKLDLEDNV 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++ SDGD+RK + +QS+A
Sbjct: 227 VETLLRCSDGDLRKAITFMQSSA 249
>gi|290981375|ref|XP_002673406.1| predicted protein [Naegleria gruberi]
gi|284086989|gb|EFC40662.1| predicted protein [Naegleria gruberi]
Length = 345
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 74/154 (48%), Positives = 102/154 (66%), Gaps = 9/154 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ LPHLLFYGPPG GKT+T A A++L+ + VLELNASD+RGI ++R
Sbjct: 31 LKKSLEVGNLPHLLFYGPPGNGKTSTATAIAKQLFGPELYKTRVLELNASDERGINVIRT 90
Query: 357 QIFQFASTKTMHKSS---------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII 407
++ FA T + +K+IILDEAD+MT DAQ+ALRR +E ++ RFC+I
Sbjct: 91 KVKTFAQTAVSENPTGKGKYPCPPFKIIILDEADSMTVDAQSALRRTMETYSNVTRFCLI 150
Query: 408 CNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
CNY+S+I I SRC +FRF PL+ SL+ RL Y
Sbjct: 151 CNYVSRIIDPITSRCAKFRFKPLEYSLLKERLQY 184
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+S+I I SRC +FRF PL+ SL+ RL Y+ QE + + D
Sbjct: 138 METYSNVTRFCLICNYVSRIIDPITSRCAKFRFKPLEYSLLKERLQYIANQEGITLK-DE 196
Query: 61 K--KAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
K I+ S+GD+RK + LQSA+ + ++++ I
Sbjct: 197 KVLDTIVGHSEGDLRKAITTLQSASRMFGNAISQNHI 233
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 21/136 (15%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA-- 161
EKYRP T+D++V ++++S ++ L++ ++ + L G + S A
Sbjct: 11 EKYRPKTVDDVVHQEEVVSALKKS--------LEVGNLPHLLFYGPPGNGKTSTATAIAK 62
Query: 162 --FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------YKLIILDE 210
F K VLELNASD+RGI ++R ++ FA T + +K+IILDE
Sbjct: 63 QLFGPELYKTRVLELNASDERGINVIRTKVKTFAQTAVSENPTGKGKYPCPPFKIIILDE 122
Query: 211 ADAMTNDAQNALRRKL 226
AD+MT DAQ+ALRR +
Sbjct: 123 ADSMTVDAQSALRRTM 138
>gi|403216588|emb|CCK71084.1| hypothetical protein KNAG_0G00260 [Kazachstania naganishii CBS
8797]
Length = 350
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/148 (52%), Positives = 104/148 (70%), Gaps = 12/148 (8%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LPH+LFYGPPGTGKT+TILA ++L+ + VLELNASD+RGI IVR+++ FA
Sbjct: 55 DLPHMLFYGPPGTGKTSTILALTKELFGPELTKSRVLELNASDERGISIVREKVKNFARL 114
Query: 365 KTMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
T+ K S +K+IILDEAD+MT DAQ+ALRR +E +++ RFC+ICNY+++
Sbjct: 115 -TVSKPSKNDLEKYPCPPFKIIILDEADSMTADAQSALRRTMETYSSVTRFCLICNYITR 173
Query: 414 IPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
I + SRC++FRF LD S M RL Y
Sbjct: 174 IIDPLASRCSKFRFKSLDESNAMDRLQY 201
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +++ RFC+ICNY+++I + SRC++FRF LD S M RL YV +QE V + DG
Sbjct: 155 METYSSVTRFCLICNYITRIIDPLASRCSKFRFKSLDESNAMDRLQYVAKQESV-ICEDG 213
Query: 61 K-KAIIDLSDGDMRKVLNILQSAA 83
+ I+ +S GD+RK + +LQS++
Sbjct: 214 ALEKILIVSSGDLRKAITLLQSSS 237
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 76/139 (54%), Gaps = 24/139 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LDE+ + ++ ++ LK +D+ + L G + S ++A
Sbjct: 26 VEKYRPKNLDEVTAQDHAVNVLK--------KTLKSADLPHMLFYGPPGTGKTSTILALT 77
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----------YKLII 207
F K VLELNASD+RGI IVR+++ FA T+ K S +K+II
Sbjct: 78 KELFGPELTKSRVLELNASDERGISIVREKVKNFARL-TVSKPSKNDLEKYPCPPFKIII 136
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEAD+MT DAQ+ALRR +
Sbjct: 137 LDEADSMTADAQSALRRTM 155
>gi|408398889|gb|EKJ78015.1| hypothetical protein FPSE_01803 [Fusarium pseudograminearum CS3096]
Length = 382
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 105/154 (68%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+T+LA A++LY + VLELNASD+RGI IVR+
Sbjct: 57 LQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPDMIKSRVLELNASDERGISIVRE 116
Query: 357 QIFQFASTKTM-----HKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + +K Y K+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 117 KVKNFARMQLTNPPPGYKDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCL 176
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF LD S RL+
Sbjct: 177 ICNYVTRIIDPLASRCSKFRFKSLDQSNAKKRLE 210
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 53/83 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD S RL+ + E+E V +
Sbjct: 165 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQSNAKKRLEEIAEKEGVPLEDGA 224
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+RK + LQSAA
Sbjct: 225 VDALIKCSEGDLRKAITFLQSAA 247
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL ++ + + ++ L+ S++ + L G + S ++A
Sbjct: 36 VEKYRPKTLSDVTAQDHTVDVLQ--------RTLQSSNLPHMLFYGPPGTGKTSTVLALA 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTM-----HKSSY-----KLIIL 208
+ K VLELNASD+RGI IVR+++ FA + +K Y K+IIL
Sbjct: 88 KELYGPDMIKSRVLELNASDERGISIVREKVKNFARMQLTNPPPGYKDKYPCPPFKIIIL 147
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 148 DEADSMTQDAQSALRRTM 165
>gi|303274701|ref|XP_003056666.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461018|gb|EEH58311.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 331
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/151 (50%), Positives = 101/151 (66%), Gaps = 6/151 (3%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +PH+LFYGPPGTGKTT LA R+LY F + VLELNASD+RGI +VR+
Sbjct: 31 LQKALETANMPHMLFYGPPGTGKTTCALAICRQLYGPDLFKSRVLELNASDERGISVVRN 90
Query: 357 QIFQFASTKTMHK------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+I FAST YK++ILDEAD+MT DAQ+ALRR +E + RF I+CNY
Sbjct: 91 KIKGFASTAVGQAVPGYPCPPYKILILDEADSMTTDAQSALRRTMETHSKVTRFFILCNY 150
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+S+I I SRC +FRF PL S ++ RL +
Sbjct: 151 VSRIIEPIASRCAKFRFKPLGSEVMSDRLKH 181
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 75/137 (54%), Gaps = 18/137 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP + ++ ++++ T++ L+ +++ + L G + + +
Sbjct: 7 VPWVEKYRPRKIGDVSHQEEVVRTLQ--------KALETANMPHMLFYGPPGTGKTTCAL 58
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK------SSYKLIILD 209
A + K VLELNASD+RGI +VR++I FAST YK++ILD
Sbjct: 59 AICRQLYGPDLFKSRVLELNASDERGISVVRNKIKGFASTAVGQAVPGYPCPPYKILILD 118
Query: 210 EADAMTNDAQNALRRKL 226
EAD+MT DAQ+ALRR +
Sbjct: 119 EADSMTTDAQSALRRTM 135
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF I+CNY+S+I I SRC +FRF PL S ++ RL ++ E+E + +
Sbjct: 135 METHSKVTRFFILCNYVSRIIEPIASRCAKFRFKPLGSEVMSDRLKHIAEREGLTLGEGV 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A S GDMRK + +LQS+A
Sbjct: 195 YDAAAKHSGGDMRKAITLLQSSA 217
>gi|347829788|emb|CCD45485.1| similar to replication factor C subunit [Botryotinia fuckeliana]
Length = 379
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 104/153 (67%), Gaps = 10/153 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+T+LA A++LY + VLELNASD+RGI IVR+
Sbjct: 57 LQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPELMKSRVLELNASDERGISIVRE 116
Query: 357 QIFQFASTKTMHKS----------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + + S YK+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 117 KVKDFARMQLSNPSPAYRQKYPCPPYKIIILDEADSMTQDAQSALRRTMETYSRITRFCL 176
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
ICNY+++I + SRC++FRF LD + R+
Sbjct: 177 ICNYVTRIIDPLASRCSKFRFKSLDKGNAVVRV 209
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP L ++ + I+ ++ L+ S++ + L G + S ++A
Sbjct: 36 VEKYRPKGLGDVTAQDHTITVLQ--------RTLQSSNLPHMLFYGPPGTGKTSTVLALA 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR+++ FA + + S YK+IIL
Sbjct: 88 KELYGPELMKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRQKYPCPPYKIIIL 147
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 148 DEADSMTQDAQSALRRTM 165
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 53/83 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD + R+ + ++E V +
Sbjct: 165 METYSRITRFCLICNYVTRIIDPLASRCSKFRFKSLDKGNAVVRVREIADKEGVRLEEGA 224
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+A+I S+GD+RK + LQSAA
Sbjct: 225 VEALIKCSEGDLRKAITYLQSAA 247
>gi|429856209|gb|ELA31133.1| activator 1 41 kda subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 381
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 105/154 (68%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+T+LA A++LY + VLELNASD+RGI IVR+
Sbjct: 56 LQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELYGPEMMKSRVLELNASDERGISIVRE 115
Query: 357 QIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + + ++ +K+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 116 KVKDFARMQLTNPTAEYKKRYPVPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCL 175
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF LD RL+
Sbjct: 176 ICNYVTRIIDPLASRCSKFRFKSLDQGNAKRRLE 209
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL ++ + ++ ++ L+ S++ + L G + S ++A
Sbjct: 35 VEKYRPKTLSDVTAQDHTVTVLQ--------RTLQASNLPHMLFYGPPGTGKTSTVLALA 86
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR+++ FA + + ++ +K+IIL
Sbjct: 87 KELYGPEMMKSRVLELNASDERGISIVREKVKDFARMQLTNPTAEYKKRYPVPPFKIIIL 146
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 147 DEADSMTQDAQSALRRTM 164
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD RL+ + + E V +
Sbjct: 164 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKRRLEDIAQNEGVQLEDGA 223
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+RK + LQSAA
Sbjct: 224 VDALIKCSEGDLRKAITFLQSAA 246
>gi|407929691|gb|EKG22503.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 342
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 106/159 (66%), Gaps = 15/159 (9%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
++R + + LPH+LFYGPPGTGKT+TILA A++LY VLELNASD+RGIGIVR+
Sbjct: 57 LSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYGPELLRTRVLELNASDERGIGIVRE 116
Query: 357 QIFQFASTKTMHKSS---------------YKLIILDEADAMTNDAQNALRRIIEKFTTN 401
++ FA + + + +K+IILDEAD+MT DAQ+ALRR +E ++
Sbjct: 117 KVKNFARQQLSNPPAGPAGVEYKKRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSRI 176
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
RFC++CNY+++I + SRC++FRF LD+ RL+
Sbjct: 177 TRFCLVCNYVTRIIDPLASRCSKFRFKSLDTGSAARRLE 215
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 27/143 (18%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +L + V+ QD T+ + L+ S++ + L G + S ++A
Sbjct: 36 VEKYRPKSLSD-VNGQDHTVTV-------LSRTLQSSNLPHMLFYGPPGTGKTSTILALA 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------------Y 203
+ + VLELNASD+RGIGIVR+++ FA + + + +
Sbjct: 88 KQLYGPELLRTRVLELNASDERGIGIVREKVKNFARQQLSNPPAGPAGVEYKKRYPCPPF 147
Query: 204 KLIILDEADAMTNDAQNALRRKL 226
K+IILDEAD+MT DAQ+ALRR +
Sbjct: 148 KIIILDEADSMTQDAQSALRRTM 170
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF LD+ RL+ + E V +
Sbjct: 170 METYSRITRFCLVCNYVTRIIDPLASRCSKFRFKSLDTGSAARRLEEIAAAEGVRLGEGA 229
Query: 61 KKAII 65
A++
Sbjct: 230 VAALV 234
>gi|196003908|ref|XP_002111821.1| hypothetical protein TRIADDRAFT_50137 [Trichoplax adhaerens]
gi|190585720|gb|EDV25788.1| hypothetical protein TRIADDRAFT_50137 [Trichoplax adhaerens]
Length = 373
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 101/142 (71%), Gaps = 7/142 (4%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LP+ LFYGPPGTGKT+TILA AR LY + + VLELNASDDRGI ++R++I FA
Sbjct: 66 DLPNFLFYGPPGTGKTSTILAAARHLYGSDIYRSRVLELNASDDRGIQVIREKIKTFAQL 125
Query: 365 KTMHK-------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
++ +K+IILDEAD+MT+ AQ ALRR +EK++ RFC+ICNY+S+I
Sbjct: 126 SVANQRPDGTPCPPFKIIILDEADSMTHAAQAALRRTMEKYSKTTRFCLICNYVSRIIEP 185
Query: 418 IQSRCTRFRFGPLDSSLIMSRL 439
+ SRC++FRF PL ++++ L
Sbjct: 186 LTSRCSKFRFKPLPENILLHHL 207
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 58/89 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RFC+ICNY+S+I + SRC++FRF PL ++++ L + E+E ++
Sbjct: 163 MEKYSKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLPENILLHHLSAISEKENLDCDKQA 222
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE 89
+ II +S+GDMRK + +QS + + D+
Sbjct: 223 LRNIISISEGDMRKAITYIQSVSRLYNDK 251
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 79/138 (57%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP ++D+ V+HQD + ++ + L+ +D+ L G + S ++
Sbjct: 34 VPWVEKYRPRSIDD-VAHQDEVVSV-------LRKCLQGADLPNFLFYGPPGTGKTSTIL 85
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-------SSYKLIIL 208
AA + S + VLELNASDDRGI ++R++I FA ++ +K+IIL
Sbjct: 86 AAARHLYGSDIYRSRVLELNASDDRGIQVIREKIKTFAQLSVANQRPDGTPCPPFKIIIL 145
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 146 DEADSMTHAAQAALRRTM 163
>gi|354544379|emb|CCE41102.1| hypothetical protein CPAR2_300910 [Candida parapsilosis]
Length = 357
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 104/155 (67%), Gaps = 10/155 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + LPH+LFYGPPGTGKT+TILA A++LY + + VLELNASD+RGI IVR
Sbjct: 38 LEKQVSTGNLPHMLFYGPPGTGKTSTILALAKQLYGPNLYKSRVLELNASDERGISIVRQ 97
Query: 357 QIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
+I FA + + YK+IILDEAD+MTNDAQ+ALRR +E + RF +
Sbjct: 98 KIKNFARLTVSNPTPEDLKNYPCPPYKIIILDEADSMTNDAQSALRRTMETYANITRFAL 157
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+CNY+++I + SRC++FRF L+S ++RL Y
Sbjct: 158 VCNYITRIIDPLASRCSKFRFKLLNSENSLNRLKY 192
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 72/138 (52%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP L+++ S + + +E S ++ + L G + S ++A
Sbjct: 17 VEKYRPKNLNDIASQEHAVKVLEKQVST--------GNLPHMLFYGPPGTGKTSTILALA 68
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR +I FA + + YK+IIL
Sbjct: 69 KQLYGPNLYKSRVLELNASDERGISIVRQKIKNFARLTVSNPTPEDLKNYPCPPYKIIIL 128
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MTNDAQ+ALRR +
Sbjct: 129 DEADSMTNDAQSALRRTM 146
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 57/88 (64%), Gaps = 5/88 (5%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNV-TPD 59
+E + RF ++CNY+++I + SRC++FRF L+S ++RL Y+ +E +N+
Sbjct: 146 METYANITRFALVCNYITRIIDPLASRCSKFRFKLLNSENSLNRLKYIANEEHLNLDKSQ 205
Query: 60 GKKAIID----LSDGDMRKVLNILQSAA 83
G+ A+++ +S+GD+RK + LQSA+
Sbjct: 206 GEDAVLNEVLRISNGDLRKAITYLQSAS 233
>gi|395839806|ref|XP_003792767.1| PREDICTED: replication factor C subunit 4 [Otolemur garnettii]
Length = 365
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 126/207 (60%), Gaps = 15/207 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI ++R+
Sbjct: 63 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVIRE 122
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 123 KVKNFAQLTVSGSRSDGKLCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 182
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL + +++ + I Y +K+ E + K
Sbjct: 183 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLNITEKENVKISSEGIAYLVKVSEGDLRKA 242
Query: 465 LALTDILTEISLLVHRLEIPESMLVDL 491
+ L + L EI E ++ D+
Sbjct: 243 ITF---LQSATRLTGGKEITEEVITDI 266
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + E+E V ++ +G
Sbjct: 168 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLNITEKENVKISSEG 227
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA E+ E+ I
Sbjct: 228 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEEVI 263
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 74/244 (30%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP ++DE+ ++++ ++ L+ +D+ L G + S ++
Sbjct: 39 VPWVEKYRPKSVDEVAFQDEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 90
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI ++R+++ FA S +K++IL
Sbjct: 91 AAARELFGPELFRLRVLELNASDERGIQVIREKVKNFAQLTVSGSRSDGKLCPPFKIVIL 150
Query: 209 DEADAMTNDAQNALRRKL---------------------PVT------------------ 229
DEAD+MT+ AQ ALRR + P+T
Sbjct: 151 DEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQ 210
Query: 230 --------------PDGKKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVGY- 273
+G ++ +S+GD+RK + LQSA E+ E+ + + G
Sbjct: 211 RLLNITEKENVKISSEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEEVITDIAGVI 270
Query: 274 PTKT 277
P++T
Sbjct: 271 PSET 274
>gi|406866228|gb|EKD19268.1| activator 1 41 kDa subunit [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 385
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 101/145 (69%), Gaps = 10/145 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+T+LA A++LY + VLELNASD+RGI IVR+
Sbjct: 56 LQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPELMKSRVLELNASDERGISIVRE 115
Query: 357 QIFQFASTKTMHKS----------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + + S YK+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 116 KVKDFARMQLSNPSPAYRALYPCPPYKIIILDEADSMTQDAQSALRRTMETYSKITRFCL 175
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLD 431
ICNY+++I + SRC++FRF LD
Sbjct: 176 ICNYVTRIIDPLASRCSKFRFKSLD 200
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 22/161 (13%)
Query: 80 QSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMS 139
++AAT A T L VEKYRP L+++ + I+ ++ L+ S
Sbjct: 12 EAAATNGASAKAPTKENTRLQPWVEKYRPKNLNDVTAQDHTITVLQ--------RTLQSS 63
Query: 140 DIEYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST 195
++ + L G + S ++A + K VLELNASD+RGI IVR+++ FA
Sbjct: 64 NLPHMLFYGPPGTGKTSTVLALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARM 123
Query: 196 KTMHKSS----------YKLIILDEADAMTNDAQNALRRKL 226
+ + S YK+IILDEAD+MT DAQ+ALRR +
Sbjct: 124 QLSNPSPAYRALYPCPPYKIIILDEADSMTQDAQSALRRTM 164
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 53/83 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD R++ + E+E V++
Sbjct: 164 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDVGNAKRRVEEIAEKEGVSLEDGA 223
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ +I S+GD+RK + LQSAA
Sbjct: 224 AETLIRCSEGDLRKAITFLQSAA 246
>gi|118783134|ref|XP_312782.3| AGAP003093-PA [Anopheles gambiae str. PEST]
gi|116129067|gb|EAA08477.3| AGAP003093-PA [Anopheles gambiae str. PEST]
Length = 361
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/145 (54%), Positives = 102/145 (70%), Gaps = 8/145 (5%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA- 362
+LP+LL YGPPGTGKT+TILA AR+L+ F +LELNASDDRGI ++R+++ FA
Sbjct: 67 TDLPNLLLYGPPGTGKTSTILAAARQLFGD-MFKERILELNASDDRGIAVIRNKVKTFAQ 125
Query: 363 ----STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
T+T K +K++ILDEADAMT+ AQ ALRR +EK T RFC++CNY+S+I
Sbjct: 126 LTASGTRTDGKPCPPFKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCNYVSRIIE 185
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
I SRCT+FRF PL I+ RL Y
Sbjct: 186 PITSRCTKFRFKPLGEEKIIERLRY 210
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 53/82 (64%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK T RFC++CNY+S+I I SRCT+FRF PL I+ RL Y+ +QE V V
Sbjct: 164 MEKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLGEEKIIERLRYICDQEGVTVDDGV 223
Query: 61 KKAIIDLSDGDMRKVLNILQSA 82
K I+D+S GD+R+ + LQS
Sbjct: 224 YKDIVDISGGDLRRAITTLQSC 245
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 26/141 (18%)
Query: 100 VSRVEKYRPSTLDELVSH-------QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
V VEKYRP ++D++V ++ +ST ++P +L GT +
Sbjct: 36 VPWVEKYRPKSVDDVVEQAEVVAVLRESLSTTDLPNLLLYG------------PPGTGKT 83
Query: 153 IQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKL 205
+ A K +LELNASDDRGI ++R+++ FA T+T K +K+
Sbjct: 84 STILAAARQLFGDMFKERILELNASDDRGIAVIRNKVKTFAQLTASGTRTDGKPCPPFKI 143
Query: 206 IILDEADAMTNDAQNALRRKL 226
+ILDEADAMT+ AQ ALRR +
Sbjct: 144 VILDEADAMTHAAQAALRRTM 164
>gi|348513512|ref|XP_003444286.1| PREDICTED: replication factor C subunit 4-like [Oreochromis
niloticus]
Length = 357
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 105/150 (70%), Gaps = 7/150 (4%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+LY + VLELNASD+RGI +VRD
Sbjct: 57 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVRD 116
Query: 357 QIFQF-----ASTKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ F A T+ KS +K+IILDEAD+MT AQ ALRR +EK + RFC+ICN
Sbjct: 117 KVKNFAQLTVAGTRPDGKSCPPFKIIILDEADSMTAPAQAALRRTMEKESRTTRFCLICN 176
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC++FRF PL + + RL
Sbjct: 177 YISRIIEPLTSRCSKFRFKPLANQIQEERL 206
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 58/89 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + + RL + E+E + T +
Sbjct: 162 MEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANQIQEERLLEICEKENLKYTKES 221
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE 89
A++ +S+GD+RK + LQSAA + D+
Sbjct: 222 IAALVRVSEGDLRKAITFLQSAARLNVDK 250
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 117/271 (43%), Gaps = 74/271 (27%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 33 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 84
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQF-----ASTKTMHKSS--YKLIIL 208
AA + + VLELNASD+RGI +VRD++ F A T+ KS +K+IIL
Sbjct: 85 AAARELYGPELYRQRVLELNASDERGIQVVRDKVKNFAQLTVAGTRPDGKSCPPFKIIIL 144
Query: 209 DEADAMTNDAQNALRRKL---------------------PVTPDGKK------------- 234
DEAD+MT AQ ALRR + P+T K
Sbjct: 145 DEADSMTAPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANQIQEE 204
Query: 235 -------------------AIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTVYNSVGYP 274
A++ +S+GD+RK + LQSAA + D E+ + V G
Sbjct: 205 RLLEICEKENLKYTKESIAALVRVSEGDLRKAITFLQSAARLNVDKEITDCAVIEIAGVV 264
Query: 275 TKTEITNILRWLLNESMD-LCYKINRFIDEN 304
I N+L+ + + L + +DE
Sbjct: 265 PDKMIDNLLQICFRGTFEKLEVAVRNMVDEG 295
>gi|114052591|ref|NP_001040483.1| replication factor C4 [Bombyx mori]
gi|95103078|gb|ABF51480.1| replication factor C4 [Bombyx mori]
Length = 351
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/143 (54%), Positives = 99/143 (69%), Gaps = 8/143 (5%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS 363
+LPHLLFYGPPGTGKT+ ILA A++L+ + VLELNASD+RGI +VRD++ FA
Sbjct: 62 GDLPHLLFYGPPGTGKTSAILAAAKQLFGDISRD-RVLELNASDERGIQVVRDKVKAFAQ 120
Query: 364 TKTMHK-------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
K SYKL+ILDEAD+MT AQ ALRR +E+ T RFC+ICNY+S+I P
Sbjct: 121 LTVSGKRADGRPCPSYKLVILDEADSMTTAAQAALRRTMERETRTTRFCLICNYVSRIIP 180
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
I SRC++FRF PL ++ RL
Sbjct: 181 PITSRCSKFRFKPLARENVIKRL 203
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 75/136 (55%), Gaps = 22/136 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP T+D++V +++ + L D+ + L G + SA++AA
Sbjct: 34 VEKYRPKTIDDIVDQGEVVQVLR--------ECLSGGDLPHLLFYGPPGTGKTSAILAAA 85
Query: 163 NS-----ARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-------SSYKLIILDE 210
+RD+ VLELNASD+RGI +VRD++ FA K SYKL+ILDE
Sbjct: 86 KQLFGDISRDR--VLELNASDERGIQVVRDKVKAFAQLTVSGKRADGRPCPSYKLVILDE 143
Query: 211 ADAMTNDAQNALRRKL 226
AD+MT AQ ALRR +
Sbjct: 144 ADSMTTAAQAALRRTM 159
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+ T RFC+ICNY+S+I P I SRC++FRF PL ++ RL + E E V+V +G
Sbjct: 159 MERETRTTRFCLICNYVSRIIPPITSRCSKFRFKPLARENVIKRLREICEAENVDVG-EG 217
Query: 61 K--KAIIDLSDGDMRKVLNILQ 80
+ +D +GD+R+ L LQ
Sbjct: 218 EILNQAVDTCEGDLRRALTALQ 239
>gi|305663891|ref|YP_003860179.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
gi|304378460|gb|ADM28299.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
Length = 323
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/159 (48%), Positives = 106/159 (66%), Gaps = 2/159 (1%)
Query: 283 LRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLE 342
LR ++N+ ++ ++ +F++E +PHLLF GPPGTGKTT LA A LY ++ +LE
Sbjct: 14 LREIVNQE-EIVNRLMKFVEEKNMPHLLFAGPPGTGKTTAALALAHDLYGD-EWRRYLLE 71
Query: 343 LNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNV 402
LNASD+RGI ++R ++ +FA +K +K++ILDEAD MT DAQ ALRRI+E +
Sbjct: 72 LNASDERGIAVIRSKVKEFARSKLPGDIPFKIVILDEADNMTADAQQALRRIMEMYVETT 131
Query: 403 RFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
RF +I NY SKI IQSRC FRF PL + SRL +
Sbjct: 132 RFILIANYPSKIIDPIQSRCASFRFTPLKREDVTSRLRW 170
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 96/187 (51%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF +I NY SKI IQSRC FRF PL + SRL ++ EQEKV DG
Sbjct: 124 MEMYVETTRFILIANYPSKIIDPIQSRCASFRFTPLKREDVTSRLRWICEQEKVKCDEDG 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNEDTIFTLLVSRVEK 105
I +LS GDMRK +NILQSA+ AH EV E L +E
Sbjct: 184 LDVIYELSGGDMRKAINILQSASALGEVTVSNVYKVVGLAHPKEVREIITLALSGKFIEA 243
Query: 106 ----------YRPSTLDELVS-HQDIIST-IEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
Y S +D + H++I S ++IPE + V L + +I++R+ G ++I
Sbjct: 244 RDKLHNLMIVYGLSGVDIIKQMHREIFSADLKIPEDIRVILADYIGEIQFRIVEGADDEI 303
Query: 154 QLSALIA 160
QLSAL+A
Sbjct: 304 QLSALLA 310
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 114/271 (42%), Gaps = 75/271 (27%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLK--MSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP TL E+V+ ++I++ L+ V + M + + GT + AL
Sbjct: 7 EKYRPKTLREIVNQEEIVNR-------LMKFVEEKNMPHLLFAGPPGTGKTTAALALAHD 59
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ +LELNASD+RGI ++R ++ +FA +K +K++ILDEAD MT DAQ A
Sbjct: 60 LYGDEWRRYLLELNASDERGIAVIRSKVKEFARSKLPGDIPFKIVILDEADNMTADAQQA 119
Query: 222 LRR-----------------------------------------------------KLPV 228
LRR K+
Sbjct: 120 LRRIMEMYVETTRFILIANYPSKIIDPIQSRCASFRFTPLKREDVTSRLRWICEQEKVKC 179
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
DG I +LS GDMRK +NILQSA+ EV VY VG E+ I+ L+
Sbjct: 180 DEDGLDVIYELSGGDMRKAINILQSASA--LGEVTVSNVYKVVGLAHPKEVREIITLALS 237
Query: 289 ESMDLCYKINRFIDENELPH--LLFYGPPGT 317
+FI+ + H ++ YG G
Sbjct: 238 ---------GKFIEARDKLHNLMIVYGLSGV 259
>gi|242024266|ref|XP_002432549.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212518009|gb|EEB19811.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 360
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/142 (53%), Positives = 103/142 (72%), Gaps = 8/142 (5%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA-- 362
+LP+LLFYGPPGTGKT+TILA AR+L+ F +LELNASDDRGI ++RD++ FA
Sbjct: 67 DLPNLLFYGPPGTGKTSTILAAARQLFGD-MFKERILELNASDDRGIQVIRDKVKTFAQL 125
Query: 363 ---STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
ST+ + +K+++LDEAD+MT+ AQ ALRR +E +T RFC++CNY+S+I P
Sbjct: 126 SASSTRPDGQPCPPFKIVLLDEADSMTSAAQAALRRTMELYTKTTRFCLVCNYVSRIIPP 185
Query: 418 IQSRCTRFRFGPLDSSLIMSRL 439
I SRC++FRF PL + I RL
Sbjct: 186 ITSRCSKFRFKPLGENKIFERL 207
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 73/130 (56%), Gaps = 13/130 (10%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T RFC++CNY+S+I P I SRC++FRF PL + I RL + + EKVN+ D
Sbjct: 163 MELYTKTTRFCLVCNYVSRIIPPITSRCSKFRFKPLGENKIFERLSKISKAEKVNINDDT 222
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-------DEVNE------DTIFTLLVSRVEKYR 107
++ + GD+R+ + LQS A ++VNE D++ T L++ K
Sbjct: 223 LMTLVKCTGGDLRRAITSLQSCARIKEEGELITIEDVNEVAGVIPDSVITELINTCNKNN 282
Query: 108 PSTLDELVSH 117
+T+++ V+
Sbjct: 283 YTTIEDFVNE 292
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 24/137 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP T+D++V +++S + LK +D+ L G + S ++AA
Sbjct: 38 VEKYRPKTVDDIVEQVEVVSVLR--------QTLKGADLPNLLFYGPPGTGKTSTILAA- 88
Query: 163 NSARD------KLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLIILD 209
AR K +LELNASDDRGI ++RD++ FA ST+ + +K+++LD
Sbjct: 89 --ARQLFGDMFKERILELNASDDRGIQVIRDKVKTFAQLSASSTRPDGQPCPPFKIVLLD 146
Query: 210 EADAMTNDAQNALRRKL 226
EAD+MT+ AQ ALRR +
Sbjct: 147 EADSMTSAAQAALRRTM 163
>gi|444509952|gb|ELV09445.1| Replication factor C subunit 4 [Tupaia chinensis]
Length = 322
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/251 (35%), Positives = 147/251 (58%), Gaps = 30/251 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKACPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIII-------------- 451
Y+S+I + SRC++FRF PL + RL + +++ N +I
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISNEVIPTETIDGIFAACQS 241
Query: 452 -WYIKIQEIK---IEKGLALTDILTEIS-LLVHRLEIPESMLVDLVLKMSDIEYRLAAGT 506
+ K++ + I++G A + ++ ++ ++V ++ + + K+++++ LA G
Sbjct: 242 GSFDKLEAVVKDLIDEGHAASQLINQLHDIVVENDDLSDKHKSIITEKLAEVDKCLADGA 301
Query: 507 SEKIQLSALIA 517
E +QL +L A
Sbjct: 302 DEHLQLISLCA 312
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLK--------KSLEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKACPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 150 DEADSMTSAAQAALRRTM 167
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVT 57
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + E+E V ++
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKIS 223
>gi|389631703|ref|XP_003713504.1| replication factor C subunit 2 [Magnaporthe oryzae 70-15]
gi|351645837|gb|EHA53697.1| replication factor C subunit 2 [Magnaporthe oryzae 70-15]
Length = 384
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 106/154 (68%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+T+LA A++L+ + VLELNASD+RGI IVR+
Sbjct: 58 LQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELFGPELMKSRVLELNASDERGISIVRE 117
Query: 357 QIFQFASTKTM-----HKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + +KS Y K+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 118 KVKDFARMQLTNPPPGYKSKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCL 177
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF LD SRL+
Sbjct: 178 ICNYVTRIIDPLASRCSKFRFKSLDQENARSRLE 211
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 84/160 (52%), Gaps = 24/160 (15%)
Query: 81 SAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSD 140
A TA ++ N + T VEKYRP TL ++ + ++ ++ L+ S+
Sbjct: 17 GATTAKQEKQNPENTRTQ--PWVEKYRPKTLSDVTAQDHTVTVLQ--------RTLQASN 66
Query: 141 IEYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK 196
+ + L G + S ++A F K VLELNASD+RGI IVR+++ FA +
Sbjct: 67 LPHMLFYGPPGTGKTSTVLALAKELFGPELMKSRVLELNASDERGISIVREKVKDFARMQ 126
Query: 197 TM-----HKSSY-----KLIILDEADAMTNDAQNALRRKL 226
+KS Y K+IILDEAD+MT DAQ+ALRR +
Sbjct: 127 LTNPPPGYKSKYPCPPFKIIILDEADSMTQDAQSALRRTM 166
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD SRL+ + +E V +
Sbjct: 166 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQENARSRLEDIAAKEGVALEDGA 225
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+RK + LQSAA
Sbjct: 226 VDALIKCSEGDLRKAITFLQSAA 248
>gi|405961159|gb|EKC27004.1| Replication factor C subunit 4 [Crassostrea gigas]
Length = 343
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 103/150 (68%), Gaps = 7/150 (4%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ ++LP+LLFYGPPGTGKT+TILA AR L+ VLELNASD+RGI +VR+
Sbjct: 60 LKKSLEGSDLPNLLFYGPPGTGKTSTILAAARSLFGAEMMKLRVLELNASDERGINVVRE 119
Query: 357 QIFQFASTKTMHK-------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ +FA T +K+IILDEAD+MT+ AQ ALRR +EK + + RFC+ICN
Sbjct: 120 KVKKFAQTTASGTRPDGKPCPPFKIIILDEADSMTSPAQAALRRTMEKESKSTRFCLICN 179
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I I SRC +FRF PL ++ RL
Sbjct: 180 YVSRIIEPIASRCAKFRFKPLADQILTERL 209
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 92/170 (54%), Gaps = 11/170 (6%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + + RFC+ICNY+S+I I SRC +FRF PL ++ RL + E EK++ +
Sbjct: 165 MEKESKSTRFCLICNYVSRIIEPIASRCAKFRFKPLADQILTERLQGICEAEKISYDKES 224
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTIFTL---------LVSRVEKYRPST 110
KA+ID S+GDMRK + LQS A D EV++ +F + + R+ +
Sbjct: 225 IKALIDSSEGDMRKAITYLQSVARLKGDEEVSKADVFEIAGANTYIYEISHRIHRNENRF 284
Query: 111 LDELVSHQDIISTIEIPESMLVD-LVLKMSDIEYRLAAGTSEKIQLSALI 159
L E++S + I I++ S + L K+ ++ L G E +QL AL
Sbjct: 285 LTEVISDETIDVLIKVCHSNSYEKLEKKVQVVDKCLMDGADEYLQLMALF 334
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEK+RP ++D++ ++++ ++ L+ SD+ L G + S ++
Sbjct: 36 VPWVEKFRPRSVDDVAYQDEVVAVLK--------KSLEGSDLPNLLFYGPPGTGKTSTIL 87
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-------SSYKLIIL 208
AA F + KL VLELNASD+RGI +VR+++ +FA T +K+IIL
Sbjct: 88 AAARSLFGAEMMKLRVLELNASDERGINVVREKVKKFAQTTASGTRPDGKPCPPFKIIIL 147
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 148 DEADSMTSPAQAALRRTM 165
>gi|146181988|ref|XP_001023745.2| ATPase, AAA family protein [Tetrahymena thermophila]
gi|146143985|gb|EAS03500.2| ATPase, AAA family protein [Tetrahymena thermophila SB210]
Length = 373
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 102/142 (71%), Gaps = 7/142 (4%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST- 364
LPHL+ +GPPGTGKT++ILA A++LY + +LELNASDDRGI IVRD+I +FA
Sbjct: 75 LPHLILHGPPGTGKTSSILAFAKQLYGPTFYKERILELNASDDRGIQIVRDKIKKFAQQV 134
Query: 365 ------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418
K+ ++K+IILDEAD+MT +AQ+ALRRIIE ++ RFCIICNY++KI +
Sbjct: 135 VSKNPDKSFKCPNFKIIILDEADSMTTEAQSALRRIIEDTSSTTRFCIICNYITKIIEPL 194
Query: 419 QSRCTRFRFGPLDSSLIMSRLD 440
SRC +FRF P+ +++L+
Sbjct: 195 GSRCVKFRFKPIPLEAQITKLE 216
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 126/279 (45%), Gaps = 73/279 (26%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
L+ VEKYRP+ ++E+ +++I +++ VL ++ + + G + S++
Sbjct: 41 LLPWVEKYRPNKIEEVSYQEEVIKSLQ--------GVLLSGNLPHLILHGPPGTGKTSSI 92
Query: 159 IA----AFNSARDKLEVLELNASDDRGIGIVRDQIFQFAST-------KTMHKSSYKLII 207
+A + K +LELNASDDRGI IVRD+I +FA K+ ++K+II
Sbjct: 93 LAFAKQLYGPTFYKERILELNASDDRGIQIVRDKIKKFAQQVVSKNPDKSFKCPNFKIII 152
Query: 208 LDEADAMTNDAQNALRRKLP------------------VTPDGKKAI------------- 236
LDEAD+MT +AQ+ALRR + + P G + +
Sbjct: 153 LDEADSMTTEAQSALRRIIEDTSSTTRFCIICNYITKIIEPLGSRCVKFRFKPIPLEAQI 212
Query: 237 ----------------------IDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYP 274
I +S+GD+RK +N+LQSA+T + ++ + + G
Sbjct: 213 TKLEEICKTEDIEYEKEALEKLIKISNGDLRKSVNLLQSASTLYEKDIKVEVIEEISGVN 272
Query: 275 TKTEITNILRWLLNESMD-LCYKINRFIDENELPHLLFY 312
I + + L+ + D L + +F+ + P L Y
Sbjct: 273 YLLCINKLYKLLIGKDFDKLKEGVKQFLYQGYSPDQLLY 311
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 61/95 (64%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RFCIICNY++KI + SRC +FRF P+ +++L+ + + E + +
Sbjct: 171 IEDTSSTTRFCIICNYITKIIEPLGSRCVKFRFKPIPLEAQITKLEEICKTEDIEYEKEA 230
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
+ +I +S+GD+RK +N+LQSA+T + ++ + I
Sbjct: 231 LEKLIKISNGDLRKSVNLLQSASTLYEKDIKVEVI 265
>gi|410079477|ref|XP_003957319.1| hypothetical protein KAFR_0E00300 [Kazachstania africana CBS 2517]
gi|372463905|emb|CCF58184.1| hypothetical protein KAFR_0E00300 [Kazachstania africana CBS 2517]
Length = 350
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 107/156 (68%), Gaps = 12/156 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ LPH+LFYGPPGTGKT+TILA ++L+ VLELNASD+RGI IVR+
Sbjct: 47 LKKTLESANLPHMLFYGPPGTGKTSTILALTKELFGPELAKTRVLELNASDERGISIVRE 106
Query: 357 QIFQFASTKTMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
++ FA T+ KSS YK+IILDEAD+MT DAQ+ALRR +E ++ RFC
Sbjct: 107 KVKNFARL-TVSKSSKEDLEKYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFC 165
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ICNY+++I + SRC++FRF L+++ + RL Y
Sbjct: 166 LICNYITRIIDPLASRCSKFRFKSLEATNALDRLKY 201
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 78/139 (56%), Gaps = 24/139 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP L+E V+ QD T+ + L+ +++ + L G + S ++A
Sbjct: 26 VEKYRPKKLEE-VTAQDHAVTV-------LKKTLESANLPHMLFYGPPGTGKTSTILALT 77
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----------YKLII 207
F K VLELNASD+RGI IVR+++ FA T+ KSS YK+II
Sbjct: 78 KELFGPELAKTRVLELNASDERGISIVREKVKNFARL-TVSKSSKEDLEKYPCPPYKIII 136
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEAD+MT DAQ+ALRR +
Sbjct: 137 LDEADSMTADAQSALRRTM 155
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 56/83 (67%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF L+++ + RL Y+ E+E V
Sbjct: 155 METYSGVTRFCLICNYITRIIDPLASRCSKFRFKSLEATNALDRLKYISEKESVQYEEGT 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ I+++S GD+R+ + +LQSA+
Sbjct: 215 LEKILEISQGDLRRAITLLQSAS 237
>gi|449277649|gb|EMC85743.1| Replication factor C subunit 4 [Columba livia]
Length = 362
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 128/207 (61%), Gaps = 15/207 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI ++R+
Sbjct: 60 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRQRVLELNASDERGIQVIRE 119
Query: 357 QIFQFAS-TKTMHKS------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA T + +S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 120 KVKAFAQLTASGSRSDGKVCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 179
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSR-LDYDDISFFNI----IIWYIKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + R LD + I + + +K+ E + K
Sbjct: 180 YISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVAEKEHVKISSEAVSYLVKVSEGDLRKA 239
Query: 465 LALTDILTEISLLVHRLEIPESMLVDL 491
+ L + L+ EI E ++ ++
Sbjct: 240 ITF---LQSATRLMGGKEITEKIVTEI 263
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL V E+E V ++ +
Sbjct: 165 MEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVAEKEHVKISSEA 224
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVS 116
++ +S+GD+RK + LQSA + + I T + + K T+DEL+S
Sbjct: 225 VSYLVKVSEGDLRKAITFLQSATRLMGGKEITEKIVTEIAGVIPK---ETIDELLS 277
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 19/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +DE+ ++++ ++ L+ +D+ L G + S ++AA
Sbjct: 39 VEKYRPKNVDEVAFQDEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTILAAA 90
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS-TKTMHKS------SYKLIILDEA 211
F + VLELNASD+RGI ++R+++ FA T + +S +K++ILDEA
Sbjct: 91 RELFGPELFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRSDGKVCPPFKIVILDEA 150
Query: 212 DAMTNDAQNALRRKL 226
D+MT+ AQ ALRR +
Sbjct: 151 DSMTSAAQAALRRTM 165
>gi|412990864|emb|CCO18236.1| predicted protein [Bathycoccus prasinos]
Length = 350
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/151 (49%), Positives = 101/151 (66%), Gaps = 6/151 (3%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ + LPH+LFYGPPGTGKTT LA ++LY VLELNASD+RGI +VR
Sbjct: 48 LEKAMETHNLPHMLFYGPPGTGKTTCALAICKQLYGPELGKKRVLELNASDERGISVVRG 107
Query: 357 QIFQFASTKTMHK------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+I FAST YK++ILDEAD+MTNDAQ+ALRR++E ++ RF I+CNY
Sbjct: 108 KIKSFASTTVGEGVPGYPCPPYKILILDEADSMTNDAQSALRRMMETYSRVTRFFILCNY 167
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+SKI I SRC +FRF LD + R+++
Sbjct: 168 VSKIIDPISSRCAKFRFKSLDGGTMHERINF 198
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 105/245 (42%), Gaps = 71/245 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
V+KYRP + ++ +++S +E ++ ++ + L G + + +A
Sbjct: 27 VDKYRPKKVSDVAYQTEVVSALE--------KAMETHNLPHMLFYGPPGTGKTTCALAIC 78
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK------SSYKLIILDEAD 212
+ K VLELNASD+RGI +VR +I FAST YK++ILDEAD
Sbjct: 79 KQLYGPELGKKRVLELNASDERGISVVRGKIKSFASTTVGEGVPGYPCPPYKILILDEAD 138
Query: 213 AMTNDAQNALRRKL---------------------PVTP----------DGK-------- 233
+MTNDAQ+ALRR + P++ DG
Sbjct: 139 SMTNDAQSALRRMMETYSRVTRFFILCNYVSKIIDPISSRCAKFRFKSLDGGTMHERINF 198
Query: 234 --------------KAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEI 279
+A+ +S GDMRK + +LQSAA+ E+ D + G +I
Sbjct: 199 IAKGENLQLAEGTLQALEHVSAGDMRKAITLLQSAASLFGPELTGDRIREVAGVIPDEKI 258
Query: 280 TNILR 284
+L+
Sbjct: 259 EELLQ 263
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 91/189 (48%), Gaps = 31/189 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF I+CNY+SKI I SRC +FRF LD + R++++ + E + +
Sbjct: 152 METYSRVTRFFILCNYVSKIIDPISSRCAKFRFKSLDGGTMHERINFIAKGENLQLAEGT 211
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI---------------FTLLVSRVEK 105
+A+ +S GDMRK + +LQSAA+ E+ D I L V+ +
Sbjct: 212 LQALEHVSAGDMRKAITLLQSAASLFGPELTGDRIREVAGVIPDEKIEELLQLCVAGDSQ 271
Query: 106 YRPSTLDELVSHQDIISTIEIPES--------------MLVDLVLKMSDIEYRLAAGTSE 151
+ ++++ +D ++I E M ++ LK+ ++E +L G E
Sbjct: 272 KSQALAEDIL--KDGFPCLQILEQFGYYLADSDLLEDEMKAEICLKLGEVEKKLVDGADE 329
Query: 152 KIQLSALIA 160
+QLS I+
Sbjct: 330 WLQLSHCIS 338
>gi|310790808|gb|EFQ26341.1| replication factor C [Glomerella graminicola M1.001]
Length = 383
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 104/153 (67%), Gaps = 10/153 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+T+LA A++LY + VLELNASD+RGI IVR+
Sbjct: 57 LQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELYGPEMIKSRVLELNASDERGISIVRE 116
Query: 357 QIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + + ++ +K+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 117 KVKDFARMQLTNPTNEYKKRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCL 176
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
ICNY+++I + SRC++FRF LD RL
Sbjct: 177 ICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRL 209
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 15/150 (10%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD RL + E E V +
Sbjct: 165 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLGDIAENEGVQLEDGA 224
Query: 61 KKAIIDLSDGDMRKVLNILQSAA---------TAHAD--EVNEDTIFTLLVSRVEKYRP- 108
A+I S+GD+RK + LQSAA T+ D +V++ + +V + P
Sbjct: 225 VDALIKCSEGDLRKAITYLQSAARLVGAGDKDTSGDDAMDVDKRPVTVKIVEDIAGVIPE 284
Query: 109 STLDELVSH---QDIISTIEIPESMLVDLV 135
+T+DELVS Q + T + ++ D+V
Sbjct: 285 NTIDELVSAIRPQGTVDTYQTVAKVVEDMV 314
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL ++ + ++ ++ L+ S++ + L G + S ++A
Sbjct: 36 VEKYRPKTLSDVTAQDHTVTVLQ--------RTLQASNLPHMLFYGPPGTGKTSTVLALA 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR+++ FA + + ++ +K+IIL
Sbjct: 88 KELYGPEMIKSRVLELNASDERGISIVREKVKDFARMQLTNPTNEYKKRYPCPPFKIIIL 147
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 148 DEADSMTQDAQSALRRTM 165
>gi|440640436|gb|ELR10355.1| hypothetical protein GMDG_04737 [Geomyces destructans 20631-21]
Length = 389
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 102/154 (66%), Gaps = 11/154 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+L+YGPPGTGKT+TILA +R LY A F++ VLELNASD+RGI IVR
Sbjct: 59 LQRTLQSSNLPHMLYYGPPGTGKTSTILALSRSLYGPALFHSRVLELNASDERGISIVRK 118
Query: 357 QIFQFASTKTMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
++ FA + YK+IILDEAD+MT DAQ+ALRR +E ++ RFC
Sbjct: 119 KVKDFARMQLSRPPGGNYQEQYLCPPYKIIILDEADSMTQDAQSALRRTMETYSKITRFC 178
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
++CNY+++I + SRC++FRF + +RL
Sbjct: 179 LVCNYVTRIIDPLASRCSKFRFKRMGEGQAGTRL 212
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF + +RL + E+EKV +
Sbjct: 168 METYSKITRFCLVCNYVTRIIDPLASRCSKFRFKRMGEGQAGTRLREIAEKEKVPMEEGV 227
Query: 61 KKAIIDLSDGDMRKVLNILQSAA----TAHAD---EVNEDTI 95
+A+I S+GD+RK + LQSAA A AD EV ED +
Sbjct: 228 VEALIKHSEGDLRKAITFLQSAARLVGAAGADGGEEVEEDAM 269
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 102/246 (41%), Gaps = 83/246 (33%)
Query: 97 TLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
T L VEKYRP +L ++ + I+ ++ L+ S++ + L G + S
Sbjct: 32 TRLQPWVEKYRPKSLADVTAQDHTITVLQ--------RTLQSSNLPHMLYYGPPGTGKTS 83
Query: 157 ALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------- 202
++A + A VLELNASD+RGI IVR ++ FA +
Sbjct: 84 TILALSRSLYGPALFHSRVLELNASDERGISIVRKKVKDFARMQLSRPPGGNYQEQYLCP 143
Query: 203 -YKLIILDEADAMTNDAQNALRR------------------------------------- 224
YK+IILDEAD+MT DAQ+ALRR
Sbjct: 144 PYKIIILDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKRM 203
Query: 225 ----------------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAA----TAHAD---E 261
K+P+ +A+I S+GD+RK + LQSAA A AD E
Sbjct: 204 GEGQAGTRLREIAEKEKVPMEEGVVEALIKHSEGDLRKAITFLQSAARLVGAAGADGGEE 263
Query: 262 VNEDTV 267
V ED +
Sbjct: 264 VEEDAM 269
>gi|328767253|gb|EGF77303.1| hypothetical protein BATDEDRAFT_91654 [Batrachochytrium
dendrobatidis JAM81]
Length = 326
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/144 (49%), Positives = 101/144 (70%), Gaps = 4/144 (2%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
I LPHLL YGPPGTGKT+ ILA AR+LY +LELNASD+RGI ++R+++
Sbjct: 36 IQTQNLPHLLLYGPPGTGKTSIILALARQLYGANGLKGRLLELNASDERGIDVIREKVKN 95
Query: 361 FA--STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
FA + H ++ YK+I+LDEAD++T DAQ+ALRRI+E ++ RFC+ICNY+S+I
Sbjct: 96 FAKITVSAAHSNAPPYKIIVLDEADSLTTDAQSALRRIMENYSKITRFCLICNYVSRIID 155
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLD 440
+ SRC + RF P+ +++ RL+
Sbjct: 156 PLASRCAKLRFKPIPMPIVIERLE 179
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 12/127 (9%)
Query: 104 EKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
E+YRP TL E+ ++++ + I L L+L Y I L+
Sbjct: 12 ERYRPKTLSEISGQNEVVAVLSNTIQTQNLPHLLL------YGPPGTGKTSIILALARQL 65
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFA--STKTMHKSS--YKLIILDEADAMTND 217
+ + K +LELNASD+RGI ++R+++ FA + H ++ YK+I+LDEAD++T D
Sbjct: 66 YGANGLKGRLLELNASDERGIDVIREKVKNFAKITVSAAHSNAPPYKIIVLDEADSLTTD 125
Query: 218 AQNALRR 224
AQ+ALRR
Sbjct: 126 AQSALRR 132
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+S+I + SRC + RF P+ +++ RL+ + EK++ P
Sbjct: 134 MENYSKITRFCLICNYVSRIIDPLASRCAKLRFKPIPMPIVIERLELICSNEKLSFAPGA 193
Query: 61 KKAIIDLSDGDMRKVLNILQS 81
+ GD+RK + +LQS
Sbjct: 194 LDFLATSCAGDLRKAITLLQS 214
>gi|346979302|gb|EGY22754.1| replication factor C subunit 2 [Verticillium dahliae VdLs.17]
Length = 380
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/154 (48%), Positives = 104/154 (67%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A++LY VLELNASD+RGI IVR+
Sbjct: 57 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPELIKTRVLELNASDERGISIVRE 116
Query: 357 QIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + + ++ +K+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 117 KVKNFARMQLTNPTAEYKKRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCL 176
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF LD RL+
Sbjct: 177 ICNYVTRIIDPLASRCSKFRFKSLDQGNAKRRLE 210
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL + V+ QD TI + L+ S++ + L G + S ++A
Sbjct: 36 VEKYRPKTLSD-VTAQDHTVTI-------LQRTLQASNLPHMLFYGPPGTGKTSTILALA 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR+++ FA + + ++ +K+IIL
Sbjct: 88 KELYGPELIKTRVLELNASDERGISIVREKVKNFARMQLTNPTAEYKKRYPCPPFKIIIL 147
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 148 DEADSMTQDAQSALRRTM 165
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD RL+ + + E V +
Sbjct: 165 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKRRLEEIAKNEGVELEEGA 224
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+RK + LQSAA
Sbjct: 225 VDALIKCSEGDLRKAITFLQSAA 247
>gi|378755127|gb|EHY65154.1| hypothetical protein NERG_01600 [Nematocida sp. 1 ERTm2]
Length = 319
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 97/131 (74%), Gaps = 3/131 (2%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
+ ++PH LF+GPPGTGKTT A R++ + N V+ELNASD+RGIG++R+++
Sbjct: 34 LVKSEDIPHFLFFGPPGTGKTTAAKAICREVLASPERN--VMELNASDERGIGVIREKVK 91
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
FAST + K+IILDEAD+MT +AQNALRRIIE ++ NVRF IICNY +KI PAI+
Sbjct: 92 VFASTFGI-SCKMKIIILDEADSMTKEAQNALRRIIEIYSKNVRFIIICNYSTKIIPAIK 150
Query: 420 SRCTRFRFGPL 430
SRC FRFGP+
Sbjct: 151 SRCAPFRFGPV 161
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 96/195 (49%), Gaps = 27/195 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ NVRF IICNY +KI PAI+SRC FRFGP+ + + + + ++ +E+ T D
Sbjct: 126 IEIYSKNVRFIIICNYSTKIIPAIKSRCAPFRFGPVKPAEMHAFVKEIVAKEEGIATDDS 185
Query: 61 KKAIIDLSDGDMRKVLNILQ------------SAATAHADEVNEDTIFTLL-VSRVEKYR 107
+ I ++ GD+R+ +N++ S H EV I + + R E +
Sbjct: 186 IERICKIAQGDIRRAVNLVNGLLITEDREITCSRVNKHYKEVKPSEIRQVFRIMRTEDFE 245
Query: 108 PST-------------LDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
+ L E+V+ + EI E + +S+IE+RL G SE +Q
Sbjct: 246 TAKAEFRRIKTEFGLGLKEIVNAIADVLKEEITEEKGHQMSY-LSEIEHRLGRGASELVQ 304
Query: 155 LSALIAAFNSARDKL 169
+ALI+ F+ KL
Sbjct: 305 ENALISYFSGRTKKL 319
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 71/123 (57%), Gaps = 11/123 (8%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP+ L LV + I ++ ++K DI + L G + +A A
Sbjct: 11 EKYRPAYLRNLVGNVHITDGLQ--------ALVKSEDIPHFLFFGPPGTGKTTAAKAICR 62
Query: 164 S--ARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
A + V+ELNASD+RGIG++R+++ FAST + K+IILDEAD+MT +AQNA
Sbjct: 63 EVLASPERNVMELNASDERGIGVIREKVKVFASTFGI-SCKMKIIILDEADSMTKEAQNA 121
Query: 222 LRR 224
LRR
Sbjct: 122 LRR 124
>gi|367015134|ref|XP_003682066.1| hypothetical protein TDEL_0F00440 [Torulaspora delbrueckii]
gi|359749728|emb|CCE92855.1| hypothetical protein TDEL_0F00440 [Torulaspora delbrueckii]
Length = 354
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 105/155 (67%), Gaps = 10/155 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + + LPH+LFYGPPGTGKT+TILA ++L+ VLELNASD+RGI IVR+
Sbjct: 47 LKKTLGSSNLPHMLFYGPPGTGKTSTILALTKELFGPELTKTRVLELNASDERGISIVRE 106
Query: 357 QIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA S+ YK+IILDEAD+MT DAQ+ALRR +E +++ RFC+
Sbjct: 107 KVKNFARLTVSKPSAKDRENHPCPPYKIIILDEADSMTADAQSALRRTMETYSSVTRFCL 166
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ICNY+++I + SRC++FRF LD++ + RL Y
Sbjct: 167 ICNYVTRIIDPLASRCSKFRFKSLDAANALDRLKY 201
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 73/138 (52%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LDE+ + ++ ++ L S++ + L G + S ++A
Sbjct: 26 VEKYRPKKLDEVAAQDHAVNVLK--------KTLGSSNLPHMLFYGPPGTGKTSTILALT 77
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
F K VLELNASD+RGI IVR+++ FA S+ YK+IIL
Sbjct: 78 KELFGPELTKTRVLELNASDERGISIVREKVKNFARLTVSKPSAKDRENHPCPPYKIIIL 137
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 138 DEADSMTADAQSALRRTM 155
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 55/82 (67%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +++ RFC+ICNY+++I + SRC++FRF LD++ + RL Y+ ++E V+
Sbjct: 155 METYSSVTRFCLICNYVTRIIDPLASRCSKFRFKSLDAANALDRLKYIAKEESVDYEEGV 214
Query: 61 KKAIIDLSDGDMRKVLNILQSA 82
I+ +S GDMR+ + +LQSA
Sbjct: 215 LDDILKISSGDMRRAITLLQSA 236
>gi|171680165|ref|XP_001905028.1| hypothetical protein [Podospora anserina S mat+]
gi|170939709|emb|CAP64935.1| unnamed protein product [Podospora anserina S mat+]
Length = 405
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 102/147 (69%), Gaps = 11/147 (7%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR+++ FA
Sbjct: 86 QLPHMLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARM 145
Query: 365 KTMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
+ + SS +K+IILDEAD+MT DAQ+ALRR +E ++ RFC+ICNY+++
Sbjct: 146 QLTNVSSAAYKARYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTR 205
Query: 414 IPPAIQSRCTRFRFGPLDSSLIMSRLD 440
I + SRC++FRF LD RL+
Sbjct: 206 IIDPLASRCSKFRFKSLDQGNAKKRLE 232
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 54/83 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD RL+ + E+EKV +
Sbjct: 187 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLEEIAEKEKVGLDEGA 246
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ +I+ ++GD+RK + LQSAA
Sbjct: 247 VEGLINCAEGDLRKAITYLQSAA 269
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 31/153 (20%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE-----------------IPESMLVDLVLKMSDIEYRL 145
VEKYRP TL ++ + I+ ++ P +M L ++ + +
Sbjct: 37 VEKYRPKTLSDVTAQDHTITVLQRTLQASNVCSPPSPPSSFPTNMT--LSPQLPHMLFYG 94
Query: 146 AAGTSEKIQLSALIAA-FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-- 202
GT + + AL + K VLELNASD+RGI IVR+++ FA + + SS
Sbjct: 95 PPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARMQLTNVSSAA 154
Query: 203 ---------YKLIILDEADAMTNDAQNALRRKL 226
+K+IILDEAD+MT DAQ+ALRR +
Sbjct: 155 YKARYPCPPFKIIILDEADSMTQDAQSALRRTM 187
>gi|212546601|ref|XP_002153454.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
marneffei ATCC 18224]
gi|210064974|gb|EEA19069.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
marneffei ATCC 18224]
Length = 394
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 101/149 (67%), Gaps = 13/149 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A+ L+ + +LELNASD+RGI IVR+
Sbjct: 63 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPTLYRTRILELNASDERGINIVRE 122
Query: 357 QIFQFASTKTMHKSS-------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+I FA T+ S +K+IILDEAD+MT DAQ+ALRR +E+++ R
Sbjct: 123 KIKDFARTQLSQPSGLDAAYREKYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITR 182
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDS 432
FC++CNY+++I + SRC++FRF LD
Sbjct: 183 FCLVCNYVTRIIEPLASRCSKFRFKALDG 211
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 25/141 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +LD+ V+ QD +T+ + L+ S++ + L G + S ++A
Sbjct: 42 VEKYRPKSLDD-VAAQDHTTTV-------LQRTLQASNLPHMLFYGPPGTGKTSTILALA 93
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------------YKL 205
F + +LELNASD+RGI IVR++I FA T+ S +K+
Sbjct: 94 KSLFGPTLYRTRILELNASDERGINIVREKIKDFARTQLSQPSGLDAAYREKYPCPPFKI 153
Query: 206 IILDEADAMTNDAQNALRRKL 226
IILDEAD+MT DAQ+ALRR +
Sbjct: 154 IILDEADSMTQDAQSALRRTM 174
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF LD R+ + E + +
Sbjct: 174 MEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKALDGVSAGDRISEIAAAEGLTLDEGV 233
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ +I S+GD+R+ + LQSAA
Sbjct: 234 VETLIRCSEGDLRRAITYLQSAA 256
>gi|149234968|ref|XP_001523363.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146453152|gb|EDK47408.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 402
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 104/155 (67%), Gaps = 10/155 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + I LPH+LFYGPPGTGKT+TILA A++LY + + VLELNASD+RGI IVR
Sbjct: 59 LKKQISTGNLPHMLFYGPPGTGKTSTILALAKQLYGPNLYKSRVLELNASDERGISIVRQ 118
Query: 357 QIFQFASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
+I FA + + YK+IILDEAD+MTNDAQ+ALRR +E + RF +
Sbjct: 119 KIKNFAKLTVSNPTEDDLRNYPCPPYKIIILDEADSMTNDAQSALRRTMETYANITRFAL 178
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+CNY+++I + SRC++FRF L++ ++RL Y
Sbjct: 179 VCNYITRIIDPLASRCSKFRFKLLNNENSLNRLKY 213
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LD++ S + ++ + ++ + L G + S ++A
Sbjct: 38 VEKYRPKNLDDVASQDHAVKVLKKQ--------ISTGNLPHMLFYGPPGTGKTSTILALA 89
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR +I FA + + YK+IIL
Sbjct: 90 KQLYGPNLYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTEDDLRNYPCPPYKIIIL 149
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MTNDAQ+ALRR +
Sbjct: 150 DEADSMTNDAQSALRRTM 167
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 55/88 (62%), Gaps = 5/88 (5%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF ++CNY+++I + SRC++FRF L++ ++RL Y+ ++E +++ G
Sbjct: 167 METYANITRFALVCNYITRIIDPLASRCSKFRFKLLNNENSLNRLKYIAKEENLHLDEKG 226
Query: 61 K-----KAIIDLSDGDMRKVLNILQSAA 83
++ +S+GDMRK + LQSA+
Sbjct: 227 APDEVLNEVLRISNGDMRKAITYLQSAS 254
>gi|365759876|gb|EHN01638.1| Rfc2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 353
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 103/147 (70%), Gaps = 12/147 (8%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPH+LFYGPPGTGKT+TILA ++LY + +LELNASD+RGI IVR+++ FA
Sbjct: 58 LPHMLFYGPPGTGKTSTILALTKELYGPELMKSRILELNASDERGISIVREKVKNFARL- 116
Query: 366 TMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
T+ K S YK+IILDEAD+MT DAQ+ALRR +E ++ RFC+ICNY+++I
Sbjct: 117 TVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF LDS+ + RL Y
Sbjct: 177 IDPLASRCSKFRFKALDSNNAIDRLRY 203
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 56/83 (67%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LDS+ + RL Y+ EQE V
Sbjct: 157 METYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSNNAIDRLRYISEQENVKCDSGV 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ I+D+S GD+R+ + +LQSA+
Sbjct: 217 LERILDISAGDLRRGITLLQSAS 239
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 24/139 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LDE+ + + ++ LK +++ + L G + S ++A
Sbjct: 28 VEKYRPKNLDEVTAQDHAVKVLK--------KTLKSANLPHMLFYGPPGTGKTSTILALT 79
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----------YKLII 207
+ K +LELNASD+RGI IVR+++ FA T+ K S YK+II
Sbjct: 80 KELYGPELMKSRILELNASDERGISIVREKVKNFARL-TVSKPSKHDLENYPCPPYKIII 138
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEAD+MT DAQ+ALRR +
Sbjct: 139 LDEADSMTADAQSALRRTM 157
>gi|448537421|ref|XP_003871334.1| Rfc2 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380355691|emb|CCG25209.1| Rfc2 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 355
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 104/155 (67%), Gaps = 10/155 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + LPH+LFYGPPGTGKT+TILA A++LY + + VLELNASD+RGI IVR
Sbjct: 38 LEKQVSTGNLPHMLFYGPPGTGKTSTILALAKQLYGPNLYKSRVLELNASDERGISIVRQ 97
Query: 357 QIFQFASTKTMHKS----------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
+I FA + + YK+IILDEAD+MTNDAQ+ALRR +E + RF +
Sbjct: 98 KIKNFAKLTVSNPTPEDLKNYPCPPYKIIILDEADSMTNDAQSALRRTMETYANITRFAL 157
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+CNY+++I + SRC++FRF L++ ++RL Y
Sbjct: 158 VCNYITRIIDPLASRCSKFRFKLLNNENSLNRLKY 192
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 72/138 (52%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP L+++ S + + +E S ++ + L G + S ++A
Sbjct: 17 VEKYRPKNLNDIASQEHAVKVLEKQVST--------GNLPHMLFYGPPGTGKTSTILALA 68
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR +I FA + + YK+IIL
Sbjct: 69 KQLYGPNLYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTPEDLKNYPCPPYKIIIL 128
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MTNDAQ+ALRR +
Sbjct: 129 DEADSMTNDAQSALRRTM 146
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 57/88 (64%), Gaps = 5/88 (5%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNV-TPD 59
+E + RF ++CNY+++I + SRC++FRF L++ ++RL Y+ +E++N+
Sbjct: 146 METYANITRFALVCNYITRIIDPLASRCSKFRFKLLNNENSLNRLKYIANEEQLNLDKSQ 205
Query: 60 GKKAIID----LSDGDMRKVLNILQSAA 83
G+ +++ +S+GD+RK + LQSA+
Sbjct: 206 GEDGVLNEVLKISNGDLRKAITYLQSAS 233
>gi|401837599|gb|EJT41507.1| RFC2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 353
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 103/147 (70%), Gaps = 12/147 (8%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPH+LFYGPPGTGKT+TILA ++LY + +LELNASD+RGI IVR+++ FA
Sbjct: 58 LPHMLFYGPPGTGKTSTILALTKELYGPELMKSRILELNASDERGISIVREKVKNFARL- 116
Query: 366 TMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
T+ K S YK+IILDEAD+MT DAQ+ALRR +E ++ RFC+ICNY+++I
Sbjct: 117 TVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF LDS+ + RL Y
Sbjct: 177 IDPLASRCSKFRFKALDSNNAIDRLRY 203
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 56/83 (67%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LDS+ + RL Y+ EQE V
Sbjct: 157 METYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSNNAIDRLRYISEQENVKCDSGV 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ I+D+S GD+R+ + +LQSA+
Sbjct: 217 LERILDISAGDLRRGITLLQSAS 239
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 24/139 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LDE+ + + ++ LK +++ + L G + S ++A
Sbjct: 28 VEKYRPKNLDEVTAQDHAVKVLK--------KTLKSANLPHMLFYGPPGTGKTSTILALT 79
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----------YKLII 207
+ K +LELNASD+RGI IVR+++ FA T+ K S YK+II
Sbjct: 80 KELYGPELMKSRILELNASDERGISIVREKVKNFARL-TVSKPSKHDLENYPCPPYKIII 138
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEAD+MT DAQ+ALRR +
Sbjct: 139 LDEADSMTADAQSALRRTM 157
>gi|401625031|gb|EJS43057.1| rfc2p [Saccharomyces arboricola H-6]
Length = 353
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 104/147 (70%), Gaps = 12/147 (8%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPH+LFYGPPGTGKT+TILA ++LY + +LELNASD+RGI IVR+++ FA
Sbjct: 58 LPHMLFYGPPGTGKTSTILALTKELYGPELMKSRILELNASDERGISIVREKVKNFARL- 116
Query: 366 TMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
T+ K S YK+IILDEAD+MT DAQ+ALRR +E +++ RFC+ICNY+++I
Sbjct: 117 TVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSSVTRFCLICNYVTRI 176
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF LD++ + RL Y
Sbjct: 177 IDPLASRCSKFRFKALDANNAIDRLRY 203
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 57/83 (68%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +++ RFC+ICNY+++I + SRC++FRF LD++ + RL Y+ EQE V
Sbjct: 157 METYSSVTRFCLICNYVTRIIDPLASRCSKFRFKALDANNAIDRLRYISEQENVKCDAGV 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ I+D+S GD+R+ + +LQSA+
Sbjct: 217 LERILDISAGDLRRGITLLQSAS 239
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 77/139 (55%), Gaps = 24/139 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VE+YRP LDE V+ QD T+ + LK +++ + L G + S ++A
Sbjct: 28 VERYRPKNLDE-VTAQDHAVTV-------LKKTLKSANLPHMLFYGPPGTGKTSTILALT 79
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----------YKLII 207
+ K +LELNASD+RGI IVR+++ FA T+ K S YK+II
Sbjct: 80 KELYGPELMKSRILELNASDERGISIVREKVKNFARL-TVSKPSKHDLENYPCPPYKIII 138
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEAD+MT DAQ+ALRR +
Sbjct: 139 LDEADSMTADAQSALRRTM 157
>gi|72072160|ref|XP_787339.1| PREDICTED: replication factor C subunit 4-like isoform 2
[Strongylocentrotus purpuratus]
gi|390359382|ref|XP_003729467.1| PREDICTED: replication factor C subunit 4-like isoform 1
[Strongylocentrotus purpuratus]
Length = 355
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/236 (38%), Positives = 142/236 (60%), Gaps = 28/236 (11%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LP++LFYGPPGTGKT+TILA +R+L+ + + VLELNASD+RGI +VRD++ +FA T
Sbjct: 60 DLPNMLFYGPPGTGKTSTILAASRELFGTDMYRSRVLELNASDERGIQVVRDKVKKFAQT 119
Query: 365 KTMH-------KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
+K+IILDEAD+MT DAQ ALRR +EK + N +FC+ICNY+S+I
Sbjct: 120 AAGGIRPDGKPCPPFKIIILDEADSMTYDAQAALRRTMEKQSKNTKFCLICNYISRIIEP 179
Query: 418 IQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWYIKIQEIKIEKGLALTDILTE 473
+ SRC++FRF PL + +L + ++I+ + I +K+ +G D+
Sbjct: 180 LTSRCSKFRFKPLSKPIQGKKLREICEAENINCGEEALEAI----LKLSEG----DMRKS 231
Query: 474 ISLL--VHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLE 527
I+ L VHRL+ + + V+ V Y +A +K+ + A + + +KL+
Sbjct: 232 ITFLQSVHRLQREDGIRVEDV-------YEIAGVIPDKMIDDLIQACYGGSYEKLD 280
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 104/238 (43%), Gaps = 73/238 (30%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP T+DE+ ++++ ++ L+ +D+ L G + S ++
Sbjct: 28 VPWVEKYRPRTVDEVAYQDEVVAVLKKS--------LQGADLPNMLFYGPPGTGKTSTIL 79
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH-------KSSYKLIIL 208
AA F + + VLELNASD+RGI +VRD++ +FA T +K+IIL
Sbjct: 80 AASRELFGTDMYRSRVLELNASDERGIQVVRDKVKKFAQTAAGGIRPDGKPCPPFKIIIL 139
Query: 209 DEADAMTNDAQNALRRKL---------------------PVTP--------------DGK 233
DEAD+MT DAQ ALRR + P+T GK
Sbjct: 140 DEADSMTYDAQAALRRTMEKQSKNTKFCLICNYISRIIEPLTSRCSKFRFKPLSKPIQGK 199
Query: 234 K------------------AIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVG 272
K AI+ LS+GDMRK + LQS D + + VY G
Sbjct: 200 KLREICEAENINCGEEALEAILKLSEGDMRKSITFLQSVHRLQREDGIRVEDVYEIAG 257
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + N +FC+ICNY+S+I + SRC++FRF PL + +L + E E +N +
Sbjct: 157 MEKQSKNTKFCLICNYISRIIEPLTSRCSKFRFKPLSKPIQGKKLREICEAENINCGEEA 216
Query: 61 KKAIIDLSDGDMRKVLNILQS 81
+AI+ LS+GDMRK + LQS
Sbjct: 217 LEAILKLSEGDMRKSITFLQS 237
>gi|61367093|gb|AAX42951.1| replication factor C 4 [synthetic construct]
Length = 364
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 136/246 (55%), Gaps = 30/246 (12%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNI------IIWYIKIQEIKIEK 463
Y+S+I + SRC++F F PL + RL D N+ I + +K+ E + K
Sbjct: 182 YVSRIIEPLTSRCSKFSFKPLSDKIQQQRL-LDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
+ L + L EI E ++ D+ AG ++ + AA S
Sbjct: 241 AITF---LQSATRLTGGKEITEKVITDI------------AGVIPAEKIDGVFAACQSGS 285
Query: 524 -DKLEA 528
DKLEA
Sbjct: 286 FDKLEA 291
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 150 DEADSMTSAAQAALRRTM 167
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++F F PL + RL + ++E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFSFKPLSDKIQQQRLLDIAKKENVKISDEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNE---------------DTIFTLLVS--- 101
++ +S+GD+RK + LQSA E+ E D +F S
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSF 286
Query: 102 -RVEKYRPSTLDELVSHQDIISTIE--IPESMLVD-----LVLKMSDIEYRLAAGTSEKI 153
++E +DE + +++ + + E+ L D + K+++++ LA G E +
Sbjct: 287 DKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHL 346
Query: 154 QLSALIA 160
QL +L A
Sbjct: 347 QLISLCA 353
>gi|156057403|ref|XP_001594625.1| hypothetical protein SS1G_04432 [Sclerotinia sclerotiorum 1980]
gi|154702218|gb|EDO01957.1| hypothetical protein SS1G_04432 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 412
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 104/153 (67%), Gaps = 10/153 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+T+LA A++LY + VLELNASD+RGI IVR+
Sbjct: 57 LQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPELIKSRVLELNASDERGISIVRE 116
Query: 357 QIFQFASTKTMHKS----------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + + S YK+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 117 KVKDFARMQLSNPSPAYRQKYPCPPYKIIILDEADSMTQDAQSALRRTMETYSRITRFCL 176
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
ICNY+++I + SRC++FRF LD + R+
Sbjct: 177 ICNYVTRIIDPLASRCSKFRFKSLDKGNAVVRV 209
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP L ++ + I+ ++ L+ S++ + L G + S ++A
Sbjct: 36 VEKYRPKGLGDVTAQDHTITVLQ--------RTLQSSNLPHMLFYGPPGTGKTSTVLALA 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR+++ FA + + S YK+IIL
Sbjct: 88 KELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRQKYPCPPYKIIIL 147
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 148 DEADSMTQDAQSALRRTM 165
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 53/83 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD + R+ + ++E V +
Sbjct: 165 METYSRITRFCLICNYVTRIIDPLASRCSKFRFKSLDKGNAVVRVKEIADKEGVKLEEGA 224
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+A+I S+GD+RK + LQSAA
Sbjct: 225 VEALIRCSEGDLRKAITYLQSAA 247
>gi|154324182|ref|XP_001561405.1| hypothetical protein BC1G_00490 [Botryotinia fuckeliana B05.10]
Length = 344
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 104/153 (67%), Gaps = 10/153 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+T+LA A++LY + VLELNASD+RGI IVR+
Sbjct: 57 LQRTLQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPELMKSRVLELNASDERGISIVRE 116
Query: 357 QIFQFASTKTMHKS----------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + + S YK+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 117 KVKDFARMQLSNPSPAYRQKYPCPPYKIIILDEADSMTQDAQSALRRTMETYSRITRFCL 176
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
ICNY+++I + SRC++FRF LD + R+
Sbjct: 177 ICNYVTRIIDPLASRCSKFRFKSLDKGNAVVRV 209
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP L ++ + I+ ++ L+ S++ + L G + S ++A
Sbjct: 36 VEKYRPKGLGDVTAQDHTITVLQ--------RTLQSSNLPHMLFYGPPGTGKTSTVLALA 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR+++ FA + + S YK+IIL
Sbjct: 88 KELYGPELMKSRVLELNASDERGISIVREKVKDFARMQLSNPSPAYRQKYPCPPYKIIIL 147
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 148 DEADSMTQDAQSALRRTM 165
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 53/83 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD + R+ + ++E V +
Sbjct: 165 METYSRITRFCLICNYVTRIIDPLASRCSKFRFKSLDKGNAVVRVREIADKEGVRLEEGA 224
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+A+I S+GD+RK + LQSAA
Sbjct: 225 VEALIKCSEGDLRKAITYLQSAA 247
>gi|312377422|gb|EFR24254.1| hypothetical protein AND_11259 [Anopheles darlingi]
Length = 328
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 101/144 (70%), Gaps = 8/144 (5%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA-- 362
+LP+LL YGPPGTGKT+TILA AR+L+ F +LELNASDDRGI ++R+++ FA
Sbjct: 55 DLPNLLLYGPPGTGKTSTILAAARQLFGD-MFKERILELNASDDRGIAVIRNKVKTFAQL 113
Query: 363 ---STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
T+ K +K++ILDEADAMT+ AQ ALRR +EK T RFC++CNY+S+I
Sbjct: 114 TASGTRADGKPCPPFKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCNYVSRIIEP 173
Query: 418 IQSRCTRFRFGPLDSSLIMSRLDY 441
I SRCT+FRF PL I+ RL Y
Sbjct: 174 ITSRCTKFRFKPLGEERIIERLRY 197
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 54/82 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK T RFC++CNY+S+I I SRCT+FRF PL I+ RL Y+ +QE+V V
Sbjct: 151 MEKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLGEERIIERLRYICDQEQVTVDEAV 210
Query: 61 KKAIIDLSDGDMRKVLNILQSA 82
K I+D+S GDMR+ + LQS
Sbjct: 211 YKDIVDISGGDMRRAITTLQSC 232
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 66/147 (44%), Gaps = 60/147 (40%)
Query: 168 KLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLIILDEADAMTNDAQN 220
K +LELNASDDRGI ++R+++ FA T+ K +K++ILDEADAMT+ AQ
Sbjct: 86 KERILELNASDDRGIAVIRNKVKTFAQLTASGTRADGKPCPPFKIVILDEADAMTHAAQA 145
Query: 221 ALRRKL---------------------PVT---------PDGK----------------- 233
ALRR + P+T P G+
Sbjct: 146 ALRRTMEKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLGEERIIERLRYICDQEQVT 205
Query: 234 ------KAIIDLSDGDMRKVLNILQSA 254
K I+D+S GDMR+ + LQS
Sbjct: 206 VDEAVYKDIVDISGGDMRRAITTLQSC 232
>gi|47214930|emb|CAG01152.1| unnamed protein product [Tetraodon nigroviridis]
Length = 357
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 105/150 (70%), Gaps = 7/150 (4%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+LY + VLELNASD+RGI ++R+
Sbjct: 57 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPVLYRQRVLELNASDERGIQVIRE 116
Query: 357 QIFQFA-----STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA T+ K +K+IILDEAD+MT AQ ALRR +EK + RFC+ICN
Sbjct: 117 KVKTFAQLTVAGTRPDGKPCPPFKIIILDEADSMTPPAQAALRRTMEKESRTTRFCLICN 176
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC++FRF PLD+ + RL
Sbjct: 177 YISRIIEPLTSRCSKFRFKPLDNQVQEERL 206
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PLD+ + RL + E+E + + +
Sbjct: 162 MEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLDNQVQEERLLAICEKENLKYSGES 221
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTI 95
A++ +S+GD+RK + LQSAA D E++E TI
Sbjct: 222 VSALVRVSEGDLRKAITFLQSAARLSVDKEISERTI 257
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 117/271 (43%), Gaps = 74/271 (27%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 33 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 84
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLIIL 208
AA + + VLELNASD+RGI ++R+++ FA T+ K +K+IIL
Sbjct: 85 AAARELYGPVLYRQRVLELNASDERGIQVIREKVKTFAQLTVAGTRPDGKPCPPFKIIIL 144
Query: 209 DEADAMTNDAQNALRRKL---------------------PVTPDGKK------------- 234
DEAD+MT AQ ALRR + P+T K
Sbjct: 145 DEADSMTPPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLDNQVQEE 204
Query: 235 -------------------AIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTVYNSVGYP 274
A++ +S+GD+RK + LQSAA D E++E T+ G
Sbjct: 205 RLLAICEKENLKYSGESVSALVRVSEGDLRKAITFLQSAARLSVDKEISERTITEIAGVV 264
Query: 275 TKTEITNILRWLLNESMD-LCYKINRFIDEN 304
I ++L + + L ++ +DE
Sbjct: 265 PHKMIDSLLHICFRGTFEKLEVEVRNLVDEG 295
>gi|326475381|gb|EGD99390.1| DNA replication factor C subunit Rfc2 [Trichophyton tonsurans CBS
112818]
Length = 396
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/146 (52%), Positives = 103/146 (70%), Gaps = 12/146 (8%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA--- 362
LPH+LFYG PGTGKT+TILA ++ L+ A + VLELNASD+RGI IVR++I FA
Sbjct: 76 LPHMLFYGSPGTGKTSTILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMH 135
Query: 363 ----STKTMHKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
T ++S Y K+IILDEAD+MT+DAQ+ALRR +EK++ RFC++CNY+++
Sbjct: 136 LSQPPTDPAYRSQYPCPPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTR 195
Query: 414 IPPAIQSRCTRFRFGPLDSSLIMSRL 439
I + SRC++FRF LD S SRL
Sbjct: 196 IIDPVASRCSKFRFKVLDGSAAQSRL 221
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 79/142 (55%), Gaps = 18/142 (12%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD++ + IS ++ + S + + + L G+ + S ++A
Sbjct: 36 VEKYRPKTLDDVTAQDHTISVLQRNLHASNVKLQYCLFKPLPHMLFYGSPGTGKTSTILA 95
Query: 161 A----FNSARDKLEVLELNASDDRGIGIVRDQIFQFA-------STKTMHKSSY-----K 204
F A + VLELNASD+RGI IVR++I FA T ++S Y K
Sbjct: 96 MSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPTDPAYRSQYPCPPFK 155
Query: 205 LIILDEADAMTNDAQNALRRKL 226
+IILDEAD+MT+DAQ+ALRR +
Sbjct: 156 IIILDEADSMTHDAQSALRRTM 177
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RFC++CNY+++I + SRC++FRF LD S SRL + EK+++ +
Sbjct: 177 MEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKVLDGSAAQSRLIEIARMEKLDLEDNV 236
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++ SDGD+RK + +QS+A
Sbjct: 237 VETLLRCSDGDLRKAITFMQSSA 259
>gi|146414968|ref|XP_001483454.1| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/146 (52%), Positives = 98/146 (67%), Gaps = 10/146 (6%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPH+LFYGPPGTGKT+T+LA AR+LY + VLELNASD+RGI IVR ++ FA
Sbjct: 53 LPHMLFYGPPGTGKTSTVLALARELYGPDLIKSRVLELNASDERGIAIVRQKVKNFARLT 112
Query: 366 TMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+ S YKLIILDEAD+MT DAQ ALRR +E ++ RFC+ICNY+++I
Sbjct: 113 VSNASPEDLEKYPCPPYKLIILDEADSMTYDAQAALRRTMETYSGVTRFCLICNYITRII 172
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ RC++FRF PL + + RL Y
Sbjct: 173 DPLALRCSKFRFKPLANDNAVQRLRY 198
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 57/83 (68%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + RC++FRF PL + + RL Y+++QE++NV D
Sbjct: 152 METYSGVTRFCLICNYITRIIDPLALRCSKFRFKPLANDNAVQRLRYIVQQEELNVDEDV 211
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
++ +S+GD+R+ + LQSAA
Sbjct: 212 FSYLLTISNGDLRRAITYLQSAA 234
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 73/141 (51%), Gaps = 28/141 (19%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP LD++ S ++ ++ L +++ + L G + S ++A
Sbjct: 23 VEKYRPKNLDDVASQDHAVNVLKKS--------LVSANLPHMLFYGPPGTGKTSTVLAL- 73
Query: 163 NSARD-------KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKL 205
AR+ K VLELNASD+RGI IVR ++ FA + S YKL
Sbjct: 74 --ARELYGPDLIKSRVLELNASDERGIAIVRQKVKNFARLTVSNASPEDLEKYPCPPYKL 131
Query: 206 IILDEADAMTNDAQNALRRKL 226
IILDEAD+MT DAQ ALRR +
Sbjct: 132 IILDEADSMTYDAQAALRRTM 152
>gi|452836376|gb|EME38320.1| hypothetical protein DOTSEDRAFT_161207 [Dothistroma septosporum
NZE10]
Length = 410
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 116/187 (62%), Gaps = 26/187 (13%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + LPH+LFYGPPGTGKT+T+LA A++LY VLELNASD+RGI IVR+
Sbjct: 58 LRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYGPELMKTRVLELNASDERGISIVRE 117
Query: 357 QIFQFASTKTMHKSS---------------YKLIILDEADAMTNDAQNALRRIIEKFTTN 401
++ FA + + S YK+I+LDEAD+MT DAQ+ALRR +E ++
Sbjct: 118 KVKDFARMQLSNPPSGPAGEEYKKKYPCPPYKIIVLDEADSMTQDAQSALRRTMETYSKI 177
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKI 461
RFC++CNY+++I + SRC++FRF LD R+ +DI+ K++ +K+
Sbjct: 178 TRFCLVCNYVTRIIDPLASRCSKFRFKSLDEGNAGRRI--EDIA---------KLEGVKM 226
Query: 462 EKGLALT 468
E+G+ T
Sbjct: 227 EEGVTET 233
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 27/164 (16%)
Query: 82 AATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDI 141
AA A + + N+ L VEKYRP +LD++ + ++ + L+ +++
Sbjct: 16 AAKAGSSKNNKPAEDNRLQPWVEKYRPKSLDDVTAQDHTVTVLR--------RTLQSANL 67
Query: 142 EYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKT 197
+ L G + S ++A + K VLELNASD+RGI IVR+++ FA +
Sbjct: 68 PHMLFYGPPGTGKTSTVLALAKQLYGPELMKTRVLELNASDERGISIVREKVKDFARMQL 127
Query: 198 MHKSS---------------YKLIILDEADAMTNDAQNALRRKL 226
+ S YK+I+LDEAD+MT DAQ+ALRR +
Sbjct: 128 SNPPSGPAGEEYKKKYPCPPYKIIVLDEADSMTQDAQSALRRTM 171
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF LD R++ + + E V +
Sbjct: 171 METYSKITRFCLVCNYVTRIIDPLASRCSKFRFKSLDEGNAGRRIEDIAKLEGVKMEEGV 230
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++ S+GD+RK + LQSAA
Sbjct: 231 TETLLRCSEGDLRKAITFLQSAA 253
>gi|385806402|ref|YP_005842800.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
gi|383796265|gb|AFH43348.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
Length = 326
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ +F+ E PH+LF GPPGTGKTT LA A LY K + VLELNASD+RGI ++R
Sbjct: 33 RLKKFVKEKNAPHMLFAGPPGTGKTTAALAFAHDLYGK-NYQQFVLELNASDERGIDVIR 91
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+I +FA T + +KLIILDE+D +T+DAQ ALRR++E FT RF +I NY SKI
Sbjct: 92 GKIKEFARTSVVGGVPFKLIILDESDNLTSDAQQALRRMMENFTLTSRFILIANYPSKII 151
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSR FRF PL ++ RL +
Sbjct: 152 EPIQSRTALFRFSPLKKEDVIKRLKW 177
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E FT RF +I NY SKI IQSR FRF PL ++ RL +++E E V+
Sbjct: 131 MENFTLTSRFILIANYPSKIIEPIQSRTALFRFSPLKKEDVIKRLKWILENESVSYEESA 190
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNEDTIFTL---LVSR 102
+A+ ++S+GDMRK +N+LQSA+ AH E+ E L
Sbjct: 191 LEAVFEISEGDMRKAINVLQSASAIGKVTVDTVYKVVGLAHPKEIREMLNLALSGDFNGA 250
Query: 103 VEKYRPSTLDELVS--------HQDIIST-IEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
E+ R +D +S H++I S I++ E M + + +I +R+ G+ ++I
Sbjct: 251 RERLRKLMMDYGLSGVDVIKQIHKEIFSNEIDLSEEMKLMIADYTGEILFRITEGSDDEI 310
Query: 154 QLSALIA 160
QL++ +A
Sbjct: 311 QLNSFLA 317
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 110/236 (46%), Gaps = 66/236 (27%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP +LDE+V ++ I + + +K + + L AG + +A +A +
Sbjct: 14 EKYRPRSLDEIVDQEETI--------IRLKKFVKEKNAPHMLFAGPPGTGKTTAALAFAH 65
Query: 164 SARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
K VLELNASD+RGI ++R +I +FA T + +KLIILDE+D +T+DAQ
Sbjct: 66 DLYGKNYQQFVLELNASDERGIDVIRGKIKEFARTSVVGGVPFKLIILDESDNLTSDAQQ 125
Query: 221 ALRRKL---------------------PV---------TPDGKKAII------------- 237
ALRR + P+ +P K+ +I
Sbjct: 126 ALRRMMENFTLTSRFILIANYPSKIIEPIQSRTALFRFSPLKKEDVIKRLKWILENESVS 185
Query: 238 ----------DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
++S+GDMRK +N+LQSA+ +V DTVY VG EI +L
Sbjct: 186 YEESALEAVFEISEGDMRKAINVLQSASA--IGKVTVDTVYKVVGLAHPKEIREML 239
>gi|410930528|ref|XP_003978650.1| PREDICTED: replication factor C subunit 4-like [Takifugu rubripes]
Length = 357
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 106/150 (70%), Gaps = 7/150 (4%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+LY + VLELNASD+RGI ++R+
Sbjct: 57 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPVLYRQRVLELNASDERGIQVIRE 116
Query: 357 QIFQFA-----STKTMHK--SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA T+ K +K+IILDEAD+MT AQ ALRR +EK + RFC+ICN
Sbjct: 117 KVKTFAQLTVAGTRPDGKLCPPFKIIILDEADSMTPPAQAALRRTMEKESRTTRFCLICN 176
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC++FRF PLD+ + +RL
Sbjct: 177 YISRIIEPLTSRCSKFRFKPLDNHIQETRL 206
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PLD+ + +RL + E+E + + +G
Sbjct: 162 MEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLDNHIQETRLLDICEKENLKYSKEG 221
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
A++ +S+GD+RK + LQSAA + A E+ E TI
Sbjct: 222 ISALVRVSEGDLRKAITFLQSAARLSIAKEITEHTI 257
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 117/271 (43%), Gaps = 74/271 (27%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 33 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 84
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHK--SSYKLIIL 208
AA + + VLELNASD+RGI ++R+++ FA T+ K +K+IIL
Sbjct: 85 AAARELYGPVLYRQRVLELNASDERGIQVIREKVKTFAQLTVAGTRPDGKLCPPFKIIIL 144
Query: 209 DEADAMTNDAQNALRRKL---------------------PVTP----------------- 230
DEAD+MT AQ ALRR + P+T
Sbjct: 145 DEADSMTPPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLDNHIQET 204
Query: 231 ---------------DGKKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVGYP 274
+G A++ +S+GD+RK + LQSAA + A E+ E T+ G
Sbjct: 205 RLLDICEKENLKYSKEGISALVRVSEGDLRKAITFLQSAARLSIAKEITEHTITEIAGVV 264
Query: 275 TKTEITNILRWLLNESMD-LCYKINRFIDEN 304
I N+L + + L + +DE
Sbjct: 265 PNKMIDNLLHICFRGTFEKLEVAVRNLVDEG 295
>gi|146304798|ref|YP_001192114.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
gi|145703048|gb|ABP96190.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
Length = 326
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 100/150 (66%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ F+ E +PHLLF GPPGTGKTT+ LA LY + + +LELNASD+RGI
Sbjct: 24 DIVERLKHFVKEKNMPHLLFAGPPGTGKTTSALALVHDLYGE-NYEQYLLELNASDERGI 82
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R+++ +FA T T +K ++LDEAD MT DAQ ALRR +E +T RF + CNYL
Sbjct: 83 DVIRNKVKEFARTVTPGSVPFKTVLLDEADNMTADAQQALRRTMELYTETTRFILACNYL 142
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI IQSR FRF PL ++SRL++
Sbjct: 143 SKIIDPIQSRTALFRFYPLKKEDVISRLEF 172
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 101/189 (53%), Gaps = 31/189 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T RF + CNYLSKI IQSR FRF PL ++SRL+++++QE V P
Sbjct: 126 MELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIMKQEGVQYDPKA 185
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL----------------LVSRVE 104
I D+++GDMRK +N+LQ AA+A+ +V ++ +F + L R
Sbjct: 186 LDVIYDVTNGDMRKAINVLQ-AASAYG-KVTQEAVFKVLGLAQPKEVRDMVKLALQGRFM 243
Query: 105 KYRPSTLDELVS------------HQDIIST-IEIPESMLVDLVLKMSDIEYRLAAGTSE 151
R L +++ H+DI S +IPE + V L + ++E+R+ G +
Sbjct: 244 DARSKLLSLIINYGLSGEDIVKQVHRDIFSNEYQIPEELRVLLTDYIGEVEFRIIEGADD 303
Query: 152 KIQLSALIA 160
+IQLSA++A
Sbjct: 304 EIQLSAMLA 312
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 120/270 (44%), Gaps = 75/270 (27%)
Query: 104 EKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP +LD++V+ +DI+ ++ + E M + + GT + AL+
Sbjct: 9 EKYRPRSLDDIVNQRDIVERLKHFVKEK-------NMPHLLFAGPPGTGKTTSALALVHD 61
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ +LELNASD+RGI ++R+++ +FA T T +K ++LDEAD MT DAQ A
Sbjct: 62 LYGENYEQYLLELNASDERGIDVIRNKVKEFARTVTPGSVPFKTVLLDEADNMTADAQQA 121
Query: 222 LRRKL---------------------PVT------------------------------- 229
LRR + P+
Sbjct: 122 LRRTMELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIMKQEGVQY 181
Query: 230 -PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
P I D+++GDMRK +N+LQ AA+A+ +V ++ V+ +G E+ ++++ L
Sbjct: 182 DPKALDVIYDVTNGDMRKAINVLQ-AASAYG-KVTQEAVFKVLGLAQPKEVRDMVKLALQ 239
Query: 289 ESMDLCYKINRFIDENE--LPHLLFYGPPG 316
RF+D L ++ YG G
Sbjct: 240 ---------GRFMDARSKLLSLIINYGLSG 260
>gi|68471103|ref|XP_720328.1| hypothetical protein CaO19.7035 [Candida albicans SC5314]
gi|77022536|ref|XP_888712.1| hypothetical protein CaO19_7035 [Candida albicans SC5314]
gi|46442191|gb|EAL01482.1| hypothetical protein CaO19.7035 [Candida albicans SC5314]
gi|76573525|dbj|BAE44609.1| hypothetical protein [Candida albicans]
gi|238883252|gb|EEQ46890.1| activator 1 41 kDa subunit [Candida albicans WO-1]
Length = 363
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/151 (50%), Positives = 101/151 (66%), Gaps = 10/151 (6%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
I LPH+LFYGPPGTGKT+TILA A++LY + + VLELNASD+RGI IVR++I
Sbjct: 52 IKSGNLPHMLFYGPPGTGKTSTILALAKELYGPNLYKSRVLELNASDERGISIVREKIKN 111
Query: 361 FASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
FA + + YK+IILDEAD+MTNDAQ+ALRR +E + RF +ICNY
Sbjct: 112 FARLTISNPTKEDLQNYPCPPYKIIILDEADSMTNDAQSALRRTMENYAGITRFVLICNY 171
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+++I I SRC++FRF L++ RL Y
Sbjct: 172 ITRIIDPITSRCSKFRFKLLNNENAQLRLKY 202
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +L+++ S + I ++ +K ++ + L G + S ++A
Sbjct: 27 VEKYRPKSLNDVSSQEHTIK--------VLTQTIKSGNLPHMLFYGPPGTGKTSTILALA 78
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR++I FA + + YK+IIL
Sbjct: 79 KELYGPNLYKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLQNYPCPPYKIIIL 138
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MTNDAQ+ALRR +
Sbjct: 139 DEADSMTNDAQSALRRTM 156
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF +ICNY+++I I SRC++FRF L++ RL Y+ +QE + +
Sbjct: 156 MENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLRLKYIGQQENLRFESEN 215
Query: 61 K-----KAIIDLSDGDMRKVLNILQSAA 83
+ ++ +S GD+RK + LQSAA
Sbjct: 216 NEHQVIQELLKISGGDLRKAITYLQSAA 243
>gi|340721765|ref|XP_003399285.1| PREDICTED: replication factor C subunit 4-like [Bombus terrestris]
Length = 357
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 102/145 (70%), Gaps = 8/145 (5%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA- 362
+ P+LLFYGPPGTGKT+TILA AR+L+ + + +LELNASD+RGI +VRD+I FA
Sbjct: 63 GDFPNLLFYGPPGTGKTSTILAAARQLFG-SLYKERILELNASDERGIQVVRDKIKSFAQ 121
Query: 363 -STKTMHKSS-----YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
+ M +K+IILDEAD+MTN AQ ALRR +EK + RFC+ICNY+S+I
Sbjct: 122 LTAGGMRDDGKGCPPFKIIILDEADSMTNAAQAALRRTMEKESHTTRFCLICNYVSRIIE 181
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRCT+FRF PL I+ RL+Y
Sbjct: 182 PLTSRCTKFRFKPLGEDKIVERLEY 206
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 31/195 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRCT+FRF PL I+ RL+Y+ ++E + +
Sbjct: 160 MEKESHTTRFCLICNYVSRIIEPLTSRCTKFRFKPLGEDKIVERLEYICKEEDLKASKPV 219
Query: 61 KKAIIDLSDGDMRKVLNILQSAA--TAHADEVNEDTIFTLL-------------VSR--- 102
I++ S GD+R+ + LQS ++ D I ++ V +
Sbjct: 220 LLKIVEASGGDLRRAITCLQSITRLKGKGTDITVDDIIEIIGIVPDKWLDDLMNVCKTKD 279
Query: 103 ------------VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+E Y S + E +S + II + E+ + + ++ + YRL G S
Sbjct: 280 YSKAEEFIDQFMLEAYATSQVIEQLSER-IIYSNELTDKQKTLIADRLGECNYRLLDGGS 338
Query: 151 EKIQLSALIAAFNSA 165
E IQL L A
Sbjct: 339 EYIQLINLCCGIIKA 353
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 20/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T++++V +++ + L D L G + S ++AA
Sbjct: 35 VEKYRPRTVEDVVEQAEVVEVLR--------QCLTGGDFPNLLFYGPPGTGKTSTILAAA 86
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA--STKTMHKSS-----YKLIILDEA 211
F S K +LELNASD+RGI +VRD+I FA + M +K+IILDEA
Sbjct: 87 RQLFGSLY-KERILELNASDERGIQVVRDKIKSFAQLTAGGMRDDGKGCPPFKIIILDEA 145
Query: 212 DAMTNDAQNALRRKL 226
D+MTN AQ ALRR +
Sbjct: 146 DSMTNAAQAALRRTM 160
>gi|116785245|gb|ABK23650.1| unknown [Picea sitchensis]
gi|224286688|gb|ACN41047.1| unknown [Picea sitchensis]
Length = 339
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 100/147 (68%), Gaps = 9/147 (6%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
++ LPHLLFYGPPGTGKTTT LA A +L+ ++ + VLELNASDDRGI +VR +I
Sbjct: 37 LETGNLPHLLFYGPPGTGKTTTALAIAHQLF-GPEYKSRVLELNASDDRGINVVRTKIKD 95
Query: 361 FASTKTMHKSS--------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
FA+ ++ +K+IILDEAD+MT DAQNALRR +E ++ RFC ICNY+S
Sbjct: 96 FAAVAVGSGNTNSGYLCPPFKIIILDEADSMTEDAQNALRRTMETYSKVTRFCFICNYVS 155
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+I + SRC +FRF PL ++ R+
Sbjct: 156 RIIEPLASRCAKFRFKPLVEDIMTGRI 182
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC ICNY+S+I + SRC +FRF PL ++ R+ ++ ++E V++ D
Sbjct: 138 METYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLVEDIMTGRILHICKEEGVHLDSDA 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ +S+GD+R+ + LQSAA
Sbjct: 198 LTMLSSISEGDLRRAITYLQSAA 220
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 19/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
VEKYRP + ++ ++++ + L+ ++ + L GT + A+
Sbjct: 12 VEKYRPKQVKDVAHQEEVVRALTN--------TLETGNLPHLLFYGPPGTGKTTTALAIA 63
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS--------YKLIILDEA 211
K VLELNASDDRGI +VR +I FA+ ++ +K+IILDEA
Sbjct: 64 HQLFGPEYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGNTNSGYLCPPFKIIILDEA 123
Query: 212 DAMTNDAQNALRRKL 226
D+MT DAQNALRR +
Sbjct: 124 DSMTEDAQNALRRTM 138
>gi|358395863|gb|EHK45250.1| hypothetical protein TRIATDRAFT_151487 [Trichoderma atroviride IMI
206040]
Length = 381
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 103/154 (66%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR
Sbjct: 56 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPEMIKSRVLELNASDERGISIVRQ 115
Query: 357 QIFQFASTK-----TMHKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + +K Y K+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 116 KVKDFARMQLTNPPPSYKDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCL 175
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF LD RL+
Sbjct: 176 ICNYVTRIIDPLASRCSKFRFKSLDQGNAKRRLE 209
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD RL+ + E E V +
Sbjct: 164 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKRRLESIAEAEGVTLEDGA 223
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+RK + LQSAA
Sbjct: 224 IDALIKCSEGDLRKAITFLQSAA 246
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 75/138 (54%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +LD++ + ++ ++ L+ S++ + L G + S ++A
Sbjct: 35 VEKYRPKSLDDVTAQDHTVTVLQ--------RTLQASNLPHMLFYGPPGTGKTSTILALA 86
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-----TMHKSSY-----KLIIL 208
+ K VLELNASD+RGI IVR ++ FA + +K Y K+IIL
Sbjct: 87 KELYGPEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPSYKDKYPCPPFKIIIL 146
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 147 DEADSMTQDAQSALRRTM 164
>gi|156849229|ref|XP_001647495.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
gi|156118181|gb|EDO19637.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
Length = 350
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 105/156 (67%), Gaps = 12/156 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + LPH+LFYGPPGTGKT+TILA ++L+ + VLELNASD+RGI IVR+
Sbjct: 46 LKRTLGSANLPHMLFYGPPGTGKTSTILALTKELFGPNLIKSRVLELNASDERGISIVRE 105
Query: 357 QIFQFASTKTMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
++ FA T+ K S YK+IILDEAD+MT DAQ+ALRR +E ++ RFC
Sbjct: 106 KVKNFARL-TVSKPSKEDLEKYPCPPYKIIILDEADSMTADAQSALRRTMETYSNITRFC 164
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ICNY+++I + SRC++FRF LD + + RL +
Sbjct: 165 LICNYVTRIIDPLASRCSKFRFKALDETNALDRLKF 200
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 89/158 (56%), Gaps = 14/158 (8%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD + + RL +V ++E VN +
Sbjct: 154 METYSNITRFCLICNYVTRIIDPLASRCSKFRFKALDETNALDRLKFVAQEENVNYKENV 213
Query: 61 KKAIIDLSDGDMRKVLNILQSAA-TAHADEVNEDTIFTLLVSRVEKYRPS-TLDELVSHQ 118
+ I+++S GD+R+ + +LQSA+ T+ E +E T+ LV + PS L+E+
Sbjct: 214 LEKILEISSGDLRRAITLLQSASKTSTYTENSEITVN--LVEELAGVVPSPALNEI---- 267
Query: 119 DIISTIEIPESMLVDLVLKMSDIEYRLA-AGTSEKIQL 155
IE+ S +D V K D R +GTS QL
Sbjct: 268 -----IEVVSSKNIDAVTKYLDKFIRNGWSGTSVVNQL 300
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 24/139 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LD++ + + ++ ++ L +++ + L G + S ++A
Sbjct: 25 VEKYRPKKLDDVAAQEHAVTVLK--------RTLGSANLPHMLFYGPPGTGKTSTILALT 76
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----------YKLII 207
F K VLELNASD+RGI IVR+++ FA T+ K S YK+II
Sbjct: 77 KELFGPNLIKSRVLELNASDERGISIVREKVKNFARL-TVSKPSKEDLEKYPCPPYKIII 135
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEAD+MT DAQ+ALRR +
Sbjct: 136 LDEADSMTADAQSALRRTM 154
>gi|340517381|gb|EGR47625.1| predicted protein [Trichoderma reesei QM6a]
Length = 351
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 103/154 (66%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR
Sbjct: 56 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPEMIKSRVLELNASDERGISIVRQ 115
Query: 357 QIFQFASTK-----TMHKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + +K Y K+IILDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 116 KVKDFARMQLTNPPPHYKDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCL 175
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF LD RL+
Sbjct: 176 ICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLE 209
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 19/174 (10%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD RL+ + E E V +
Sbjct: 164 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLESIAEAEGVALEDGA 223
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPST---------- 110
+I S+GD+RK + LQSAA +++ + V+ RP T
Sbjct: 224 VDTLIKCSEGDLRKAITYLQSAARLIVEDIAGVIPDATIGDLVKAMRPRTSGQTYQSISK 283
Query: 111 -LDELVS--------HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
+++LV+ +QD++ IP+ +VL S+I+ RL G E + +
Sbjct: 284 VVEDLVADGWSAGQLYQDLVFDETIPDIQKNKIVLVFSEIDKRLVDGADEHLSI 337
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 75/138 (54%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +LD++ + ++ ++ L+ S++ + L G + S ++A
Sbjct: 35 VEKYRPKSLDDVTAQDHTVTVLQ--------RTLQASNLPHMLFYGPPGTGKTSTILALA 86
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-----TMHKSSY-----KLIIL 208
+ K VLELNASD+RGI IVR ++ FA + +K Y K+IIL
Sbjct: 87 KELYGPEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPHYKDKYPCPPFKIIIL 146
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 147 DEADSMTQDAQSALRRTM 164
>gi|402078075|gb|EJT73424.1| replication factor C subunit 2 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 384
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 107/156 (68%), Gaps = 11/156 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+T+LA A++L+ + VLELNASD+RGI IVR+
Sbjct: 58 LQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELFGPELMRSRVLELNASDERGISIVRE 117
Query: 357 QIFQFASTKTMH------KSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
++ FA + + +S Y K+IILDEAD+MT DAQ+ALRR +E ++ RFC
Sbjct: 118 KVKDFARMQLTNPPPGYDRSKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFC 177
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ICNY+++I + SRC++FRF LD +RL++
Sbjct: 178 LICNYVTRIIDPLASRCSKFRFKSLDQGNAKARLEH 213
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 55/83 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD +RL+++ E+E V + P
Sbjct: 167 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKARLEHIAEKECVALEPGA 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+RK + LQSAA
Sbjct: 227 VDALIKSSEGDLRKAITFLQSAA 249
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 76/139 (54%), Gaps = 23/139 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL ++ + ++ ++ L+ S++ + L G + S ++A
Sbjct: 37 VEKYRPKTLSDVTAQDHTVTVLQ--------RTLQASNLPHMLFYGPPGTGKTSTVLALA 88
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH------KSSY-----KLII 207
F + VLELNASD+RGI IVR+++ FA + + +S Y K+II
Sbjct: 89 KELFGPELMRSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYDRSKYPCPPFKIII 148
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEAD+MT DAQ+ALRR +
Sbjct: 149 LDEADSMTQDAQSALRRTM 167
>gi|296807688|ref|XP_002844229.1| activator 1 41 kDa subunit [Arthroderma otae CBS 113480]
gi|238843712|gb|EEQ33374.1| activator 1 41 kDa subunit [Arthroderma otae CBS 113480]
Length = 390
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 106/158 (67%), Gaps = 18/158 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYG PGTGKT+TILA ++ L+ A + VLELNASD+RGI IVR+
Sbjct: 58 LQRNLHASNLPHMLFYGSPGTGKTSTILAMSKSLFGPALVRSRVLELNASDERGISIVRE 117
Query: 357 QIFQFASTKTMHKSS---------------YKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+I FA MH S +K++ILDEAD+MT+DAQ+ALRR +EK++
Sbjct: 118 KIKDFAR---MHLSQPPADPAYRSQYPCPPFKIVILDEADSMTHDAQSALRRTMEKYSRI 174
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RFC++CNY+++I + SRC++FRF LD S SRL
Sbjct: 175 TRFCLVCNYVTRIIDPVASRCSKFRFKVLDGSAARSRL 212
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 78/143 (54%), Gaps = 30/143 (20%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TLD++ + IS ++ L S++ + L G+ + S ++A
Sbjct: 37 VEKYRPKTLDDVAAQDHTISVLQ--------RNLHASNLPHMLFYGSPGTGKTSTILAMS 88
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------------Y 203
F A + VLELNASD+RGI IVR++I FA MH S +
Sbjct: 89 KSLFGPALVRSRVLELNASDERGISIVREKIKDFAR---MHLSQPPADPAYRSQYPCPPF 145
Query: 204 KLIILDEADAMTNDAQNALRRKL 226
K++ILDEAD+MT+DAQ+ALRR +
Sbjct: 146 KIVILDEADSMTHDAQSALRRTM 168
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 62/100 (62%), Gaps = 6/100 (6%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RFC++CNY+++I + SRC++FRF LD S SRL + EK+++ +
Sbjct: 168 MEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKVLDGSAARSRLVEIARMEKLDLEDNV 227
Query: 61 KKAIIDLSDGDMRKVLNILQSAA------TAHADEVNEDT 94
+ ++ SDGD+RK + +QS+A + EV+++T
Sbjct: 228 VETLLRCSDGDLRKAITFMQSSARLARFGSGKKKEVSDET 267
>gi|66360032|ref|XP_627194.1| replication factor C like AAA ATpase [Cryptosporidium parvum Iowa
II]
gi|46228833|gb|EAK89703.1| replication factor C like AAA ATpase [Cryptosporidium parvum Iowa
II]
Length = 335
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 110/169 (65%), Gaps = 14/169 (8%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ + +PHLLF+GPPGTGKT+ +LA +R+L+ ++ +LELNASD+RGI
Sbjct: 26 DVVSMLSHVLKNGNMPHLLFHGPPGTGKTSAVLALSRELFGPNEYKNRILELNASDERGI 85
Query: 352 GIVRDQI----FQFASTKTMHK------SSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+VRD+I Q H+ S+K++ILDEA+ MT DAQ+ALRRIIE + N
Sbjct: 86 SVVRDKIKSWTRQVVQCNKTHEITGNLLPSWKIVILDEAEMMTADAQSALRRIIEVSSKN 145
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY----DDISF 446
RF IICNY+SKI + SRC +FRF P+ ++ + RL Y +D+S+
Sbjct: 146 TRFVIICNYISKIIEPLASRCAKFRFQPISANSQIERLKYICSQEDVSY 194
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 55/83 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE + N RF IICNY+SKI + SRC +FRF P+ ++ + RL Y+ QE V+
Sbjct: 139 IEVSSKNTRFVIICNYISKIIEPLASRCAKFRFQPISANSQIERLKYICSQEDVSYEDGV 198
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ I++LS GD+R+ +NILQSA+
Sbjct: 199 LETIVNLSQGDLRRGINILQSAS 221
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 22/149 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + ++ H+D++S ++ VLK ++ + L G + SA++A
Sbjct: 10 VEKYRPGNVLDISHHKDVVS--------MLSHVLKNGNMPHLLFHGPPGTGKTSAVLALS 61
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQI----FQFASTKTMHK------SSYKLIIL 208
F K +LELNASD+RGI +VRD+I Q H+ S+K++IL
Sbjct: 62 RELFGPNEYKNRILELNASDERGISVVRDKIKSWTRQVVQCNKTHEITGNLLPSWKIVIL 121
Query: 209 DEADAMTNDAQNALRRKLPVTPDGKKAII 237
DEA+ MT DAQ+ALRR + V+ + +I
Sbjct: 122 DEAEMMTADAQSALRRIIEVSSKNTRFVI 150
>gi|356509379|ref|XP_003523427.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 99/149 (66%), Gaps = 8/149 (5%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
++ PH+LFYGPPGTGKTTT LA A +L+ + + VLELNASDDRGI +VR +I
Sbjct: 37 LETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKD 96
Query: 361 FASTK---TMHKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
FA+ KS Y K+I+LDEAD+MT DAQNALRR +E ++ RF ICNY+S
Sbjct: 97 FAAVAVGTNQRKSGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVS 156
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+I + SRC +FRF PL ++ SR+ Y
Sbjct: 157 RIIEPLASRCAKFRFKPLSEEIMSSRILY 185
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 71/136 (52%), Gaps = 20/136 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + + V+HQD + + + L+ + L G + + +A
Sbjct: 12 VEKYRPKQVKD-VAHQDEVVRV-------LTNTLETGSCPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK---TMHKSSY-----KLIILDE 210
F K VLELNASDDRGI +VR +I FA+ KS Y K+I+LDE
Sbjct: 64 HQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKSGYPCPPFKIIVLDE 123
Query: 211 ADAMTNDAQNALRRKL 226
AD+MT DAQNALRR +
Sbjct: 124 ADSMTEDAQNALRRTM 139
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 57/98 (58%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ SR+ Y+ ++E + + +
Sbjct: 139 METYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQEEGLCLDAEA 198
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
+ +S GD+R+ + LQSAA ++ + + ++
Sbjct: 199 LSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISV 236
>gi|242082974|ref|XP_002441912.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
gi|241942605|gb|EES15750.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
Length = 339
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/142 (54%), Positives = 99/142 (69%), Gaps = 7/142 (4%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LPH+LFYGPPGTGKTTT LA A +LY + + VLELNASDDRGI +VR +I FA+
Sbjct: 41 DLPHMLFYGPPGTGKTTTALAIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAV 100
Query: 365 K--TMHKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
T K+ Y K+IILDEAD+MT DAQNALRR +E ++ RF ICNY+S+I
Sbjct: 101 AVGTARKAGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 160
Query: 418 IQSRCTRFRFGPLDSSLIMSRL 439
+ SRC +FRF PL ++ +R+
Sbjct: 161 LVSRCAKFRFKPLSEEVMSNRI 182
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 73/135 (54%), Gaps = 19/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + ++ +++I + L+ +D+ + L G + + +A
Sbjct: 12 VEKYRPRQVKDVAHQEEVIRVLTN--------TLQTADLPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK--TMHKSSY-----KLIILDEA 211
+ K VLELNASDDRGI +VR +I FA+ T K+ Y K+IILDEA
Sbjct: 64 YQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTARKAGYPCPPYKIIILDEA 123
Query: 212 DAMTNDAQNALRRKL 226
D+MT DAQNALRR +
Sbjct: 124 DSMTEDAQNALRRTM 138
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ +R+ ++ +E +N+
Sbjct: 138 METYSKVTRFFFICNYISRIIEPLVSRCAKFRFKPLSEEVMSNRIMHICNEEGLNLDAQA 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ +S GD+R+ + LQSAA
Sbjct: 198 LSTLSAISQGDLRRAITYLQSAA 220
>gi|350426161|ref|XP_003494352.1| PREDICTED: replication factor C subunit 4-like [Bombus impatiens]
Length = 357
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 103/145 (71%), Gaps = 8/145 (5%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA- 362
+ P+LLFYGPPGTGKT+TILA AR+L+ + + +LELNASD+RGI +VRD+I FA
Sbjct: 63 GDFPNLLFYGPPGTGKTSTILAAARQLFG-SLYKERLLELNASDERGIQVVRDKIKSFAQ 121
Query: 363 -STKTMHKSS-----YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
+ M +K+IILDEAD+MTN AQ ALRR +EK + + RFC+ICNY+S+I
Sbjct: 122 LTAGGMRDDGKGCPPFKIIILDEADSMTNAAQAALRRTMEKESHSTRFCLICNYVSRIIE 181
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRCT+FRF PL I+ RL+Y
Sbjct: 182 PLTSRCTKFRFKPLGEDKIVERLEY 206
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 31/195 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + + RFC+ICNY+S+I + SRCT+FRF PL I+ RL+Y+ ++E + T
Sbjct: 160 MEKESHSTRFCLICNYVSRIIEPLTSRCTKFRFKPLGEDKIVERLEYICKEEDLKATKPV 219
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-------DEVNE----------DTIFTLLVSR- 102
I++ S GD+R+ + LQS D++ E D + + ++
Sbjct: 220 LLKIVEASGGDLRRAITCLQSITRLKGKGIDITVDDIIEIIGIVPDKWLDDLMNVCKTKD 279
Query: 103 ------------VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+E Y S + E +S + II + E+ + + ++ + YRL G S
Sbjct: 280 YSKAEEFIDQFMLEAYATSQVIEQLSER-IIYSNELTDKQKTLIADRLGECNYRLLDGGS 338
Query: 151 EKIQLSALIAAFNSA 165
E IQL L A
Sbjct: 339 EYIQLINLCCGIIKA 353
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 20/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T++++V +++ + L D L G + S ++AA
Sbjct: 35 VEKYRPRTVEDVVEQAEVVEVLR--------QCLTGGDFPNLLFYGPPGTGKTSTILAAA 86
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA--STKTMHKSS-----YKLIILDEA 211
F S K +LELNASD+RGI +VRD+I FA + M +K+IILDEA
Sbjct: 87 RQLFGSLY-KERLLELNASDERGIQVVRDKIKSFAQLTAGGMRDDGKGCPPFKIIILDEA 145
Query: 212 DAMTNDAQNALRRKL 226
D+MTN AQ ALRR +
Sbjct: 146 DSMTNAAQAALRRTM 160
>gi|57529590|ref|NP_001006550.1| replication factor C subunit 4 [Gallus gallus]
gi|53136906|emb|CAG32782.1| hypothetical protein RCJMB04_37a17 [Gallus gallus]
Length = 359
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 105/150 (70%), Gaps = 7/150 (4%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI ++R+
Sbjct: 60 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRQRVLELNASDERGIQVIRE 119
Query: 357 QIFQFAS-TKTMHKS------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA T + ++ +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 120 KVKAFAQLTASGSRADGKVCPPFKIVILDEADSMTSAAQGALRRTMEKESKTTRFCLICN 179
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC++FRF PL + RL
Sbjct: 180 YISRIIEPLTSRCSKFRFKPLSDKIQQQRL 209
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL V E+E V +T +
Sbjct: 165 MEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKENVKITSEA 224
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +SDGD+RK + LQSA E+ E T+
Sbjct: 225 VSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTV 260
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ ++++ ++ L+ +D+ L G + S ++
Sbjct: 36 VPWVEKYRPKNVDEVAFQDEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 87
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS-TKTMHKS------SYKLIIL 208
AA F + VLELNASD+RGI ++R+++ FA T + ++ +K++IL
Sbjct: 88 AAARELFGPELFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCPPFKIVIL 147
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 148 DEADSMTSAAQGALRRTM 165
>gi|257387186|ref|YP_003176959.1| replication factor C small subunit [Halomicrobium mukohataei DSM
12286]
gi|257169493|gb|ACV47252.1| Replication factor C [Halomicrobium mukohataei DSM 12286]
Length = 322
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 110/177 (62%), Gaps = 19/177 (10%)
Query: 293 LCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIG 352
+ ++ ++D N+L H+LF GP GTGKTT+ A AR+LY + LELNASD+RGI
Sbjct: 31 IVERLQSYVDRNDLSHMLFAGPAGTGKTTSATAIARELYGD-DWQEHFLELNASDERGID 89
Query: 353 IVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
+VRD+I FA T + Y++I LDEADA+T+DAQ+ALRR +E+F+ NVRF + CNY S
Sbjct: 90 VVRDRIKSFART-SFGGVDYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFIMSCNYSS 148
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTD 469
+I IQSRC FRF PL + + +I+ I E+G+ LTD
Sbjct: 149 QIIDPIQSRCAVFRFSPLGDEAVEA-----------------EIRHIADEEGIELTD 188
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 104/190 (54%), Gaps = 28/190 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ NVRF + CNY S+I IQSRC FRF PL + + + ++ ++E + +T DG
Sbjct: 131 MEQFSNNVRFIMSCNYSSQIIDPIQSRCAVFRFSPLGDEAVEAEIRHIADEEGIELTDDG 190
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-VSRVEKYRP----------- 108
A++ + GDMRK +N LQ AA+ D V+E+ +F + +R E +
Sbjct: 191 VDALVYAAGGDMRKAINGLQ-AASVSGDVVDEEAVFAITSTARPEVIQGMVQDAIDGDFT 249
Query: 109 ---STLDELVSHQDI------------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
S LD+L++ + I I ++P+ V ++ ++ + +YR+ G +E+I
Sbjct: 250 AARSQLDDLITDEGIAGGDIIDQLHRSIWEFDVPDEQAVRILDRVGETDYRITEGANERI 309
Query: 154 QLSALIAAFN 163
QL A++A+ +
Sbjct: 310 QLEAMLASLS 319
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 115/250 (46%), Gaps = 64/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP TL ++V H+ I+ ++ VD +S + + AGT + +A+
Sbjct: 14 IEKYRPQTLSDVVGHETIVERLQ----SYVDRN-DLSHMLFAGPAGTGKTTSATAIAREL 68
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
+ LELNASD+RGI +VRD+I FA T + Y++I LDEADA+T+DAQ+AL
Sbjct: 69 YGDDWQEHFLELNASDERGIDVVRDRIKSFART-SFGGVDYRIIFLDEADALTSDAQSAL 127
Query: 223 RRKL---------------------PV--------------------------------T 229
RR + P+ T
Sbjct: 128 RRTMEQFSNNVRFIMSCNYSSQIIDPIQSRCAVFRFSPLGDEAVEAEIRHIADEEGIELT 187
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNE 289
DG A++ + GDMRK +N LQ AA+ D V+E+ V+ T T +++ ++ +
Sbjct: 188 DDGVDALVYAAGGDMRKAINGLQ-AASVSGDVVDEEAVF----AITSTARPEVIQGMVQD 242
Query: 290 SMDLCYKINR 299
++D + R
Sbjct: 243 AIDGDFTAAR 252
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 42/66 (63%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
++ ++ ++G+A DI+ ++ + ++P+ V ++ ++ + +YR+ G +E+IQL A
Sbjct: 254 QLDDLITDEGIAGGDIIDQLHRSIWEFDVPDEQAVRILDRVGETDYRITEGANERIQLEA 313
Query: 515 LIAAFN 520
++A+ +
Sbjct: 314 MLASLS 319
>gi|193702269|ref|XP_001948634.1| PREDICTED: replication factor C subunit 4-like [Acyrthosiphon
pisum]
Length = 359
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 110/173 (63%), Gaps = 21/173 (12%)
Query: 276 KTEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ 335
++EI +L+ L + D+ PHLLFYGPPGTGKT+TI+A AR+L+
Sbjct: 52 QSEIVAVLKQCLEQGADM-------------PHLLFYGPPGTGKTSTIIAAARQLFGDMY 98
Query: 336 FNAMVLELNASDDRGIGIVRDQIFQFASTKTMHK-------SSYKLIILDEADAMTNDAQ 388
N M LELNASDDRGI ++RD++ FA + +K+++LDEAD+MT AQ
Sbjct: 99 KNRM-LELNASDDRGIQVIRDKVKTFAQLTASDRRPDGKPCPPFKIVVLDEADSMTAPAQ 157
Query: 389 NALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ALRR IE+ T RFC+ICNY+S I + SRC++FRF PL ++++RL++
Sbjct: 158 AALRRTIERETKTTRFCLICNYVSCIIDPLTSRCSKFRFKPLSHEIMLTRLEH 210
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 30/194 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE+ T RFC+ICNY+S I + SRC++FRF PL ++++RL+++ ++E V P
Sbjct: 164 IERETKTTRFCLICNYVSCIIDPLTSRCSKFRFKPLSHEIMLTRLEHICKEEGVKCAPRV 223
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNED--------TIFTLLVSRV--------- 103
++D S GDMR+ + LQS A + E+ T+ + + R+
Sbjct: 224 LARLVDASGGDMRRAITSLQSTARLKGEVGIEEVDVLEVVGTVPDIWLDRMIDMGRMYDY 283
Query: 104 ------------EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE 151
E Y S + E + H I+ + ++ ++ + +S YRL G SE
Sbjct: 284 QKMDGFVEDLIFEAYSASQILEQL-HDKIVFSTDLKDNQKAIICKSISICAYRLQEGCSE 342
Query: 152 KIQLSALIAAFNSA 165
+ L L+ + A
Sbjct: 343 YVTLLNLLCSVAKA 356
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 23/137 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP T+DE+ +I++ +L + + +D+ + L G + S +IAA
Sbjct: 38 VEKYRPRTVDEVSEQSEIVA-------VLKQCLEQGADMPHLLFYGPPGTGKTSTIIAA- 89
Query: 163 NSARD------KLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-------SSYKLIILD 209
AR K +LELNASDDRGI ++RD++ FA + +K+++LD
Sbjct: 90 --ARQLFGDMYKNRMLELNASDDRGIQVIRDKVKTFAQLTASDRRPDGKPCPPFKIVVLD 147
Query: 210 EADAMTNDAQNALRRKL 226
EAD+MT AQ ALRR +
Sbjct: 148 EADSMTAPAQAALRRTI 164
>gi|157167248|ref|XP_001652243.1| replication factor C, 37-kDa subunit, putative [Aedes aegypti]
gi|94469174|gb|ABF18436.1| replication factor C [Aedes aegypti]
gi|108877369|gb|EAT41594.1| AAEL006788-PA [Aedes aegypti]
Length = 358
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/144 (53%), Positives = 102/144 (70%), Gaps = 8/144 (5%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA-- 362
+LP+LL YGPPGTGKT+TILA AR+L+ F +LELNASDDRGI ++R+++ FA
Sbjct: 65 DLPNLLLYGPPGTGKTSTILAAARQLFGD-MFKERILELNASDDRGIAVIRNKVKTFAQL 123
Query: 363 ---STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
T+T K +K++ILDEADAMT+ AQ ALRR +EK T RFC++CNY+S+I
Sbjct: 124 TASGTRTDGKPCPPFKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCNYVSRIIEP 183
Query: 418 IQSRCTRFRFGPLDSSLIMSRLDY 441
I SRCT+FRF PL ++ RL +
Sbjct: 184 ITSRCTKFRFKPLGEEKVIERLRF 207
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 55/91 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK T RFC++CNY+S+I I SRCT+FRF PL ++ RL ++ EQE V+V
Sbjct: 161 MEKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLGEEKVIERLRFICEQENVDVEDQA 220
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVN 91
+ I+D+S GD+R+ + LQS E
Sbjct: 221 YREIVDISGGDLRRAITTLQSCHRLKGKEAK 251
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 26/154 (16%)
Query: 87 ADEVNEDTIFTLLVSRVEKYRPSTLDELVSH-------QDIISTIEIPESMLVDLVLKMS 139
+D +E T V VEKYRP ++D++V ++ +ST ++P +L
Sbjct: 20 SDGSSEKRTKTHSVPWVEKYRPKSVDDVVEQAEVVAVLRESLSTADLPNLLLYG------ 73
Query: 140 DIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFA-----S 194
GT + + A K +LELNASDDRGI ++R+++ FA
Sbjct: 74 ------PPGTGKTSTILAAARQLFGDMFKERILELNASDDRGIAVIRNKVKTFAQLTASG 127
Query: 195 TKTMHKSS--YKLIILDEADAMTNDAQNALRRKL 226
T+T K +K++ILDEADAMT+ AQ ALRR +
Sbjct: 128 TRTDGKPCPPFKIVILDEADAMTHAAQAALRRTM 161
>gi|225459625|ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 isoform 1 [Vitis
vinifera]
gi|302141781|emb|CBI18984.3| unnamed protein product [Vitis vinifera]
Length = 341
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 99/147 (67%), Gaps = 8/147 (5%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
++ PH+LFYGPPGTGKTTT LA A +L+ + + VLELNASDDRGI +VR +I
Sbjct: 37 LETTNCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKD 96
Query: 361 FASTK--TMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
FA+ + H+ YK+IILDEAD+MT DAQNALRR +E ++ RF ICNY+S
Sbjct: 97 FAAVAVGSGHRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 156
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+I + SRC +FRF PL ++ SR+
Sbjct: 157 RIIEPLASRCAKFRFKPLSEEIMSSRI 183
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 74/136 (54%), Gaps = 20/136 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + + V+HQD + + + L+ ++ + L G + + +A
Sbjct: 12 VEKYRPKQVKD-VAHQDEVVRV-------LTNTLETTNCPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK--TMHKSS------YKLIILDE 210
F K VLELNASDDRGI +VR +I FA+ + H+ YK+IILDE
Sbjct: 64 HQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIIILDE 123
Query: 211 ADAMTNDAQNALRRKL 226
AD+MT DAQNALRR +
Sbjct: 124 ADSMTEDAQNALRRTM 139
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ SR+ ++ ++E++N+ +
Sbjct: 139 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKEEELNLDSEA 198
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ +S GD+R+ + LQ AA
Sbjct: 199 LSTLSSISQGDLRRAITYLQGAA 221
>gi|297612760|ref|NP_001066296.2| Os12g0176500 [Oryza sativa Japonica Group]
gi|10798806|dbj|BAB16441.1| replication factor C 37 kDa subunit [Oryza sativa Japonica Group]
gi|77553810|gb|ABA96606.1| Activator 1 37 kDa subunit, putative, expressed [Oryza sativa
Japonica Group]
gi|125535960|gb|EAY82448.1| hypothetical protein OsI_37665 [Oryza sativa Indica Group]
gi|125578677|gb|EAZ19823.1| hypothetical protein OsJ_35406 [Oryza sativa Japonica Group]
gi|215737297|dbj|BAG96226.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255670097|dbj|BAF29315.2| Os12g0176500 [Oryza sativa Japonica Group]
Length = 339
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 96/142 (67%), Gaps = 7/142 (4%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LPH+LFYGPPGTGKTTT LA A +LY + + VLELNASDDRGI +VR +I FA+
Sbjct: 41 DLPHMLFYGPPGTGKTTTALAIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAV 100
Query: 365 KTMHK-------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
YK+IILDEAD+MT DAQNALRR +E ++ RF ICNY+S+I
Sbjct: 101 AVGSARKGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 160
Query: 418 IQSRCTRFRFGPLDSSLIMSRL 439
+ SRC +FRF PL ++ +R+
Sbjct: 161 LASRCAKFRFKPLSEEVMSNRI 182
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 70/135 (51%), Gaps = 19/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + ++ ++++ + L+ +D+ + L G + + +A
Sbjct: 12 VEKYRPRQVKDVAHQEEVVRVLTT--------TLQTADLPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-------SSYKLIILDEA 211
+ K VLELNASDDRGI +VR +I FA+ YK+IILDEA
Sbjct: 64 YQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEA 123
Query: 212 DAMTNDAQNALRRKL 226
D+MT DAQNALRR +
Sbjct: 124 DSMTEDAQNALRRTM 138
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 87/182 (47%), Gaps = 27/182 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ +R+ ++ +E +++
Sbjct: 138 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDAQA 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVN------------EDTIFTLLVS-RVEKYR 107
+ +S+GD+R+ + LQSAA ++ ED + +LL S + ++
Sbjct: 198 LATLSTISNGDLRRAITYLQSAARLFGSSISSTDLISVSGAIPEDVVKSLLASCKSGEFD 257
Query: 108 PST------------LDELVSH--QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ + +L+S I++ +IP+ + K+ + + L G E +
Sbjct: 258 VANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKARICKKLGEADKCLVDGADEYL 317
Query: 154 QL 155
QL
Sbjct: 318 QL 319
>gi|147858312|emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]
Length = 341
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 99/147 (67%), Gaps = 8/147 (5%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
++ PH+LFYGPPGTGKTTT LA A +L+ + + VLELNASDDRGI +VR +I
Sbjct: 37 LETTNCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKD 96
Query: 361 FA--STKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
FA + + H+ YK+IILDEAD+MT DAQNALRR +E ++ RF ICNY+S
Sbjct: 97 FAXVAVGSGHRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 156
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+I + SRC +FRF PL ++ SR+
Sbjct: 157 RIIEPLASRCAKFRFKPLSEEIMSSRI 183
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 74/136 (54%), Gaps = 20/136 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + + V+HQD + + + L+ ++ + L G + + +A
Sbjct: 12 VEKYRPKQVKD-VAHQDEVVRV-------LTNTLETTNCPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA--STKTMHKSS------YKLIILDE 210
F K VLELNASDDRGI +VR +I FA + + H+ YK+IILDE
Sbjct: 64 HQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAXVAVGSGHRQGGYPCPPYKIIILDE 123
Query: 211 ADAMTNDAQNALRRKL 226
AD+MT DAQNALRR +
Sbjct: 124 ADSMTEDAQNALRRTM 139
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ SR+ ++ ++E++N+ +
Sbjct: 139 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKEEELNLDSEA 198
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ +S GD+R+ + LQ AA
Sbjct: 199 LSTLSSISQGDLRRAITYLQGAA 221
>gi|326926086|ref|XP_003209236.1| PREDICTED: replication factor C subunit 4-like [Meleagris
gallopavo]
Length = 362
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 143/235 (60%), Gaps = 20/235 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI ++R+
Sbjct: 60 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRQRVLELNASDERGIQVIRE 119
Query: 357 QIFQFAS-TKTMHKS------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA T + ++ +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 120 KVKAFAQLTASGSRADGEVCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 179
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL + +++ + + Y +K+ E + K
Sbjct: 180 YISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKENVKITSEAVSYLVKVSEGDLRKA 239
Query: 465 LALTDILTEISLLVHRLEIPESMLVDL--VLKMSDIEYRLAA---GTSEKIQLSA 514
+ L + L+ EI E + ++ V+ I+ L+A G+ EK++ A
Sbjct: 240 ITY---LQSATRLMGGKEITEKTVTEIAGVIPRETIDGLLSACWSGSFEKLETVA 291
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL V E+E V +T +
Sbjct: 165 MEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKENVKITSEA 224
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA E+ E T+
Sbjct: 225 VSYLVKVSEGDLRKAITYLQSATRLMGGKEITEKTV 260
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 76/135 (56%), Gaps = 19/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +DE+ ++++ ++ L+ +D+ L G + S ++AA
Sbjct: 39 VEKYRPKNVDEVAFQDEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTILAAA 90
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS-TKTMHKS------SYKLIILDEA 211
F + VLELNASD+RGI ++R+++ FA T + ++ +K++ILDEA
Sbjct: 91 RELFGPELFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGEVCPPFKIVILDEA 150
Query: 212 DAMTNDAQNALRRKL 226
D+MT+ AQ ALRR +
Sbjct: 151 DSMTSAAQAALRRTM 165
>gi|62858553|ref|NP_001016363.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
gi|89266993|emb|CAJ81288.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
gi|134026004|gb|AAI35433.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
Length = 360
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 105/150 (70%), Gaps = 7/150 (4%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA +R+LY F VLELNASD+RGI +VR+
Sbjct: 61 LKKSLEGADLPNLLFYGPPGTGKTSTILAASRELYGPELFRQRVLELNASDERGIQVVRE 120
Query: 357 QIFQFA-----STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA T++ K +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 121 KVKNFAQLTVGGTRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 180
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC++FRF PL + RL
Sbjct: 181 YVSRIIEPLTSRCSKFRFKPLADKIQTQRL 210
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + E+E V +T +
Sbjct: 166 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLADKIQTQRLLSICEKENVKITNEA 225
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++++S+GD+RK + LQSA E+ E+ +
Sbjct: 226 ISCLVEVSEGDLRKAITFLQSATRLTGGKEITEEIV 261
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 108/249 (43%), Gaps = 73/249 (29%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 37 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 88
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLIIL 208
AA + + VLELNASD+RGI +VR+++ FA T++ K +K++IL
Sbjct: 89 AASRELYGPELFRQRVLELNASDERGIQVVREKVKNFAQLTVGGTRSDGKPCPPFKIVIL 148
Query: 209 DEADAMTNDAQNALRRKL---------------------PVTPDGKK------------- 234
DEAD+MT+ AQ ALRR + P+T K
Sbjct: 149 DEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLADKIQTQ 208
Query: 235 -------------------AIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVGYP 274
++++S+GD+RK + LQSA E+ E+ V G
Sbjct: 209 RLLSICEKENVKITNEAISCLVEVSEGDLRKAITFLQSATRLTGGKEITEEIVTEIAGVV 268
Query: 275 TKTEITNIL 283
K + +L
Sbjct: 269 PKETLDCVL 277
>gi|356509381|ref|XP_003523428.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Glycine
max]
Length = 330
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/143 (53%), Positives = 97/143 (67%), Gaps = 8/143 (5%)
Query: 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK- 365
PH+LFYGPPGTGKTTT LA A +L+ + + VLELNASDDRGI +VR +I FA+
Sbjct: 31 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAV 90
Query: 366 --TMHKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418
KS Y K+I+LDEAD+MT DAQNALRR +E ++ RF ICNY+S+I +
Sbjct: 91 GTNQRKSGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPL 150
Query: 419 QSRCTRFRFGPLDSSLIMSRLDY 441
SRC +FRF PL ++ SR+ Y
Sbjct: 151 ASRCAKFRFKPLSEEIMSSRILY 173
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 69/133 (51%), Gaps = 26/133 (19%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + + V+HQD E+ ML + GT + A+
Sbjct: 12 VEKYRPKQVKD-VAHQD-----EVCPHML-----------FYGPPGTGKTTTALAIAHQL 54
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK---TMHKSSY-----KLIILDEADA 213
F K VLELNASDDRGI +VR +I FA+ KS Y K+I+LDEAD+
Sbjct: 55 FGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKSGYPCPPFKIIVLDEADS 114
Query: 214 MTNDAQNALRRKL 226
MT DAQNALRR +
Sbjct: 115 MTEDAQNALRRTM 127
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 57/98 (58%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ SR+ Y+ ++E + + +
Sbjct: 127 METYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQEEGLCLDAEA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
+ +S GD+R+ + LQSAA ++ + + ++
Sbjct: 187 LSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISV 224
>gi|91081833|ref|XP_974716.1| PREDICTED: similar to replication factor C, 37-kDa subunit,
putative [Tribolium castaneum]
gi|270006308|gb|EFA02756.1| hypothetical protein TcasGA2_TC008489 [Tribolium castaneum]
Length = 355
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 109/152 (71%), Gaps = 8/152 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + I +LP+LLFYGPPGTGKT+TILA AR+L+ + +LELNASD+RGI ++RD
Sbjct: 54 LQQCISGADLPNLLFYGPPGTGKTSTILAAARQLFGD-YYRDRILELNASDERGIQVIRD 112
Query: 357 QIFQFA-----STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA T+ K +K++ILDEAD+MT+ AQ ALRR +EK + + RFC+ICN
Sbjct: 113 KVKTFAQLTASGTRPDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKESRSTRFCLICN 172
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
Y+S+I + SRCT+FRF PL+ ++I+ RL +
Sbjct: 173 YVSRIIEPLTSRCTKFRFKPLNEAMILERLSF 204
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 57/90 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + + RFC+ICNY+S+I + SRCT+FRF PL+ ++I+ RL ++ +E V +
Sbjct: 158 MEKESRSTRFCLICNYVSRIIEPLTSRCTKFRFKPLNEAMILERLSFICGKENVECSDKT 217
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEV 90
A+++ S GDMR+ + LQS A V
Sbjct: 218 LAALVETSGGDMRRAITSLQSCAKLKGSGV 247
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 117/278 (42%), Gaps = 89/278 (32%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP T+ ++V + +S ++ + +D+ L G + S ++
Sbjct: 30 VPWVEKYRPRTVSDVVEQSEAVSVLQ--------QCISGADLPNLLFYGPPGTGKTSTIL 81
Query: 160 AAFNS-----ARDKLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLII 207
AA RD+ +LELNASD+RGI ++RD++ FA T+ K +K++I
Sbjct: 82 AAARQLFGDYYRDR--ILELNASDERGIQVIRDKVKTFAQLTASGTRPDGKPCPPFKIVI 139
Query: 208 LDEADAMTNDAQNALRRKL---------------------PVTPDGKK------------ 234
LDEAD+MT+ AQ ALRR + P+T K
Sbjct: 140 LDEADSMTHAAQAALRRTMEKESRSTRFCLICNYVSRIIEPLTSRCTKFRFKPLNEAMIL 199
Query: 235 --------------------AIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYP 274
A+++ S GDMR+ + LQS A V +
Sbjct: 200 ERLSFICGKENVECSDKTLAALVETSGGDMRRAITSLQSCAKLKGSGV-------PISID 252
Query: 275 TKTEITNIL--RWLLNESMDLCYKINRFIDENELPHLL 310
E+T ++ RW L + +D+C + D+N+L L
Sbjct: 253 DVLEVTGVVPERW-LKKFLDVC----KTKDQNKLQAFL 285
>gi|119598577|gb|EAW78171.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_b [Homo
sapiens]
gi|194386378|dbj|BAG59753.1| unnamed protein product [Homo sapiens]
Length = 303
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 125/207 (60%), Gaps = 15/207 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL +++ + I Y +K+ E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKA 241
Query: 465 LALTDILTEISLLVHRLEIPESMLVDL 491
+ L + L EI E ++ D+
Sbjct: 242 ITF---LQSATRLTGGKEITEKVITDI 265
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTIFTLLVSRV 103
++ +S+GD+RK + LQSA E+ E I + RV
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVRV 270
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 150 DEADSMTSAAQAALRRTM 167
>gi|156550041|ref|XP_001605078.1| PREDICTED: replication factor C subunit 4-like [Nasonia
vitripennis]
Length = 358
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 108/152 (71%), Gaps = 8/152 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + + P+LL YGPPGTGKT+TILA AR+L+ + F +LELNASD+RGI +VR+
Sbjct: 57 LRQCLSGGDFPNLLLYGPPGTGKTSTILAAARQLFG-SMFKERILELNASDERGIQVVRE 115
Query: 357 QIFQFA-----STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ +FA +T+ K +K+IILDEAD+MT+ AQ+ALRR +EK + RFC+ICN
Sbjct: 116 KVKKFAQLTAGNTRPDGKPCPPFKIIILDEADSMTDAAQSALRRTMEKESQTTRFCLICN 175
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
Y+S+I + SRCT+FRF PL I+ RL+Y
Sbjct: 176 YVSRIIEPLTSRCTKFRFKPLGEEKIIERLEY 207
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 86/194 (44%), Gaps = 29/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRCT+FRF PL I+ RL+Y+ +E +
Sbjct: 161 MEKESQTTRFCLICNYVSRIIEPLTSRCTKFRFKPLGEEKIIERLEYICGEEDLKAEKSV 220
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA---DEVNEDTIFTLLV----------------- 100
K ++D S GD+R+ + LQS + N D + V
Sbjct: 221 LKLVVDASGGDLRRAITCLQSVTRLKGIGIEVTNNDVLEVTGVVPTKWLDDLLRVCETKN 280
Query: 101 -SRVEKYRPSTLDELVSHQDII---STIEIPESMLVD-----LVLKMSDIEYRLAAGTSE 151
+ VE Y + E S ++ + I I + L D + K+ + YRL G SE
Sbjct: 281 YNEVEAYVDKFMLEAYSASQVVDQLNDIVIYSNTLTDKQKAYIGEKLGECSYRLLEGGSE 340
Query: 152 KIQLSALIAAFNSA 165
+Q +L A
Sbjct: 341 YVQFMSLCCGIMQA 354
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 20/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T++++V +++ + L D L G + S ++AA
Sbjct: 36 VEKYRPKTVEDVVEQGEVVEVLR--------QCLSGGDFPNLLLYGPPGTGKTSTILAAA 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLIILDEA 211
F S K +LELNASD+RGI +VR+++ +FA +T+ K +K+IILDEA
Sbjct: 88 RQLFGSMF-KERILELNASDERGIQVVREKVKKFAQLTAGNTRPDGKPCPPFKIIILDEA 146
Query: 212 DAMTNDAQNALRRKL 226
D+MT+ AQ+ALRR +
Sbjct: 147 DSMTDAAQSALRRTM 161
>gi|374633940|ref|ZP_09706305.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
gi|373523728|gb|EHP68648.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
Length = 326
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ +F+ E +PHLLF GPPGTGKTT+ LA LY + + LELNASD+RGI
Sbjct: 24 DIVERLKKFVKEKNMPHLLFAGPPGTGKTTSALALVYDLYGE-NYRQYFLELNASDERGI 82
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R+++ FA T T +K ++LDEAD MT DAQ ALRR +E +T RF + CNYL
Sbjct: 83 DVIRNKVKDFARTVTPQDVPFKTVLLDEADNMTADAQQALRRTMELYTETTRFILACNYL 142
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI IQSR FRF PL ++SRL++
Sbjct: 143 SKIIDPIQSRTALFRFYPLKKEDVISRLEF 172
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 97/188 (51%), Gaps = 29/188 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T RF + CNYLSKI IQSR FRF PL ++SRL+++ + EKV P
Sbjct: 126 MELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIAKNEKVEYDPKA 185
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNEDTIFTLLVSRVEK 105
I +++ GDMRK +NILQ+++ A E+ E + + L R +
Sbjct: 186 LDTIYEITSGDMRKAINILQASSAYGKVTTEAVYKVLGMAQPKEIRE-MVKSALQGRFTE 244
Query: 106 YRPSTLDELVS------------HQDIIST-IEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
R L +++ H+DI S +IPE + V + + ++EYR+ G ++
Sbjct: 245 ARSKLLSLMINYGLSGEDIVKQVHRDIFSNEFQIPEELRVIMADYVGEVEYRIIEGADDE 304
Query: 153 IQLSALIA 160
IQLSA++A
Sbjct: 305 IQLSAMLA 312
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 105/240 (43%), Gaps = 64/240 (26%)
Query: 104 EKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP +LD++V+ +DI+ ++ + E + L+ + GT + AL+
Sbjct: 9 EKYRPKSLDDIVNQKDIVERLKKFVKEKNMPHLL-------FAGPPGTGKTTSALALVYD 61
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R+++ FA T T +K ++LDEAD MT DAQ A
Sbjct: 62 LYGENYRQYFLELNASDERGIDVIRNKVKDFARTVTPQDVPFKTVLLDEADNMTADAQQA 121
Query: 222 LRR-----------------------------------------------------KLPV 228
LRR K+
Sbjct: 122 LRRTMELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIAKNEKVEY 181
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
P I +++ GDMRK +NILQ A++A+ +V + VY +G EI +++ L
Sbjct: 182 DPKALDTIYEITSGDMRKAINILQ-ASSAYG-KVTTEAVYKVLGMAQPKEIREMVKSALQ 239
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 455 KIQEIKIEKGLALTDILTEIS--LLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
K+ + I GL+ DI+ ++ + + +IPE + V + + ++EYR+ G ++IQL
Sbjct: 248 KLLSLMINYGLSGEDIVKQVHRDIFSNEFQIPEELRVIMADYVGEVEYRIIEGADDEIQL 307
Query: 513 SALIA 517
SA++A
Sbjct: 308 SAMLA 312
>gi|320588439|gb|EFX00908.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 395
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 104/154 (67%), Gaps = 10/154 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR+
Sbjct: 57 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPEFVKSRVLELNASDERGISIVRE 116
Query: 357 QIFQFASTKTMHK----------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
++ FA + + +KLI+LDEAD+MT DAQ+ALRR +E ++ RFC+
Sbjct: 117 KVKDFARMQLTNPPPGYRDRYPCPPFKLIVLDEADSMTQDAQSALRRTMETYSKITRFCL 176
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
ICNY+++I + SRC++FRF LD +R++
Sbjct: 177 ICNYVTRIIDPLASRCSKFRFKSLDQGNARARVE 210
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 54/83 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD +R++ + +E V++ P
Sbjct: 165 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARARVEDIATREHVSLAPGA 224
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+RK + LQSAA
Sbjct: 225 VDALIRCSEGDLRKAITFLQSAA 247
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL ++ + ++ ++ L+ S++ + L G + S ++A
Sbjct: 36 VEKYRPKTLSDVTAQDHTVTVLQ--------RTLQASNLPHMLFYGPPGTGKTSTILALA 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR+++ FA + + +KLI+L
Sbjct: 88 KELYGPEFVKSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYRDRYPCPPFKLIVL 147
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 148 DEADSMTQDAQSALRRTM 165
>gi|449299144|gb|EMC95158.1| hypothetical protein BAUCODRAFT_35150 [Baudoinia compniacensis UAMH
10762]
Length = 411
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 27/224 (12%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+T+LA A++LY + VLELNASD+RGI IVR+
Sbjct: 59 LRRMLQSSNLPHMLFYGPPGTGKTSTVLALAKQLYGPELIKSRVLELNASDERGISIVRE 118
Query: 357 QIFQFASTKTMHKSS---------------YKLIILDEADAMTNDAQNALRRIIEKFTTN 401
++ FA + + + YK+++LDEAD+MT DAQ+ALRR +E ++
Sbjct: 119 KVKDFARMQLSNPPAGPAGEEYRKKYPCPPYKIVVLDEADSMTQDAQSALRRTMETYSKI 178
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFF-------NIIIWYI 454
RFC+ICNY+++I + SRC++FRF LD + RL +DI+ +I +
Sbjct: 179 TRFCLICNYVTRIIDPLASRCSKFRFKSLDEANAGKRL--EDIAKLENVRLQDGVIETLL 236
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
+ E + K + L + LV ++ P L D K + I
Sbjct: 237 RCSEGDLRKAITF---LQSAAKLVGAVQAPAGTLPDKKRKRAKI 277
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 76/143 (53%), Gaps = 27/143 (18%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +LD++ + ++ + +L+ S++ + L G + S ++A
Sbjct: 38 VEKYRPRSLDDVTAQDHTVTVLR--------RMLQSSNLPHMLFYGPPGTGKTSTVLALA 89
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------------Y 203
+ K VLELNASD+RGI IVR+++ FA + + + Y
Sbjct: 90 KQLYGPELIKSRVLELNASDERGISIVREKVKDFARMQLSNPPAGPAGEEYRKKYPCPPY 149
Query: 204 KLIILDEADAMTNDAQNALRRKL 226
K+++LDEAD+MT DAQ+ALRR +
Sbjct: 150 KIVVLDEADSMTQDAQSALRRTM 172
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD + RL+ + + E V +
Sbjct: 172 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDEANAGKRLEDIAKLENVRLQDGV 231
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++ S+GD+RK + LQSAA
Sbjct: 232 IETLLRCSEGDLRKAITFLQSAA 254
>gi|224158698|ref|XP_002192375.1| PREDICTED: replication factor C subunit 4-like, partial
[Taeniopygia guttata]
Length = 294
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 121/198 (61%), Gaps = 15/198 (7%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LP+LLFYGPPGTGKT+TILA A +L+ F VLELNASD+RGI ++R+++ FA
Sbjct: 1 LPNLLFYGPPGTGKTSTILAAATELFGPDLFRQRVLELNASDERGIQVIREKVKAFAQLT 60
Query: 366 TMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418
S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICNY+S+I +
Sbjct: 61 ASGSHSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPL 120
Query: 419 QSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKGLALTDILTE 473
SRC++FRF PL S+ RL + + + N I Y +K+ E + K + L
Sbjct: 121 TSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEAISYLVKVSEGDLRKAITF---LQS 177
Query: 474 ISLLVHRLEIPESMLVDL 491
+ L+ EI E ++ ++
Sbjct: 178 ATRLMGGKEITEKIITEI 195
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 28/188 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL S+ RL V E+E V ++ +
Sbjct: 97 MEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEA 156
Query: 61 KKAIIDLSDGDMRKVLNILQSAA-------------TAHADEVNEDTIFTLLVS------ 101
++ +S+GD+RK + LQSA T A + ++TI LL+
Sbjct: 157 ISYLVKVSEGDLRKAITFLQSATRLMGGKEITEKIITEIAGVIPKETIDELLLGCQSGSF 216
Query: 102 -RVEKYRPSTLDE------LVS--HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
++E + ++E LV+ H I+ + + + +V K+++++ LA G E
Sbjct: 217 EKLETLAKNLINEGFAVAQLVNQLHDTIVESEDYSDKQKSAIVEKLAEVDKCLADGADEF 276
Query: 153 IQLSALIA 160
+QL +L A
Sbjct: 277 LQLMSLCA 284
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 155 LSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLII 207
L+A F + VLELNASD+RGI ++R+++ FA S +K++I
Sbjct: 19 LAAATELFGPDLFRQRVLELNASDERGIQVIREKVKAFAQLTASGSHSDGKMCPPFKIVI 78
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEAD+MT+ AQ ALRR +
Sbjct: 79 LDEADSMTSAAQAALRRTM 97
>gi|297527205|ref|YP_003669229.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
gi|297256121|gb|ADI32330.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
Length = 329
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ RF+ E +PHLLF GPPGTGKTT A L+ + + +LELNASD+RGI
Sbjct: 30 EIVSRLKRFVQERNMPHLLFAGPPGTGKTTAAHCLAHDLFGE-NYRQYMLELNASDERGI 88
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ +FA T+ +K+++LDEAD MT DAQ ALRR++E +T RF +I NY
Sbjct: 89 DVIRSKVKEFARTRVTANIPFKIVLLDEADNMTADAQQALRRLMEMYTATTRFILIANYP 148
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI IQSRC FRF PL ++SRL +
Sbjct: 149 SKIIEPIQSRCAVFRFAPLKKEDVISRLKW 178
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 98/187 (52%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T RF +I NY SKI IQSRC FRF PL ++SRL ++ QEKV V +
Sbjct: 132 MEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIANQEKVEVDEEA 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNEDTIFTL---LVSR 102
+AI DLS+GDMR+ +NILQ+AA AH E+ + L
Sbjct: 192 LEAIHDLSEGDMRRAINILQAAAALGRVTVDSVYKVVGLAHPREIRQMIQLALAGNFTDA 251
Query: 103 VEKYRPSTLDELVS--------HQDIIST-IEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
EK R ++ +S H++I ST I+IP+ + + +I++RL G ++I
Sbjct: 252 REKLRKLMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAGEIQFRLVEGADDEI 311
Query: 154 QLSALIA 160
QL+A +A
Sbjct: 312 QLNAFLA 318
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 107/239 (44%), Gaps = 64/239 (26%)
Query: 104 EKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP TLDE+V+ ++I+S ++ + E M + + GT + L
Sbjct: 15 EKYRPKTLDEIVNQEEIVSRLKRFVQER-------NMPHLLFAGPPGTGKTTAAHCLAHD 67
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ +LELNASD+RGI ++R ++ +FA T+ +K+++LDEAD MT DAQ A
Sbjct: 68 LFGENYRQYMLELNASDERGIDVIRSKVKEFARTRVTANIPFKIVLLDEADNMTADAQQA 127
Query: 222 LRR-----------------------------------------------------KLPV 228
LRR K+ V
Sbjct: 128 LRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIANQEKVEV 187
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+ +AI DLS+GDMR+ +NILQ+AA V D+VY VG EI +++ L
Sbjct: 188 DEEALEAIHDLSEGDMRRAINILQAAAA--LGRVTVDSVYKVVGLAHPREIRQMIQLAL 244
>gi|225459627|ref|XP_002285875.1| PREDICTED: replication factor C subunit 4 isoform 2 [Vitis
vinifera]
Length = 329
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/141 (53%), Positives = 97/141 (68%), Gaps = 8/141 (5%)
Query: 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK- 365
PH+LFYGPPGTGKTTT LA A +L+ + + VLELNASDDRGI +VR +I FA+
Sbjct: 31 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAV 90
Query: 366 -TMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418
+ H+ YK+IILDEAD+MT DAQNALRR +E ++ RF ICNY+S+I +
Sbjct: 91 GSGHRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 150
Query: 419 QSRCTRFRFGPLDSSLIMSRL 439
SRC +FRF PL ++ SR+
Sbjct: 151 ASRCAKFRFKPLSEEIMSSRI 171
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 70/133 (52%), Gaps = 26/133 (19%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + + V+HQD E+ ML + GT + A+
Sbjct: 12 VEKYRPKQVKD-VAHQD-----EVCPHML-----------FYGPPGTGKTTTALAIAHQL 54
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK--TMHKSS------YKLIILDEADA 213
F K VLELNASDDRGI +VR +I FA+ + H+ YK+IILDEAD+
Sbjct: 55 FGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADS 114
Query: 214 MTNDAQNALRRKL 226
MT DAQNALRR +
Sbjct: 115 MTEDAQNALRRTM 127
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ SR+ ++ ++E++N+ +
Sbjct: 127 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKEEELNLDSEA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ +S GD+R+ + LQ AA
Sbjct: 187 LSTLSSISQGDLRRAITYLQGAA 209
>gi|167393611|ref|XP_001740649.1| replication factor C subunit [Entamoeba dispar SAW760]
gi|165895162|gb|EDR22913.1| replication factor C subunit, putative [Entamoeba dispar SAW760]
Length = 329
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/137 (54%), Positives = 97/137 (70%), Gaps = 4/137 (2%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LP+LLF+GPPG+GKTT+ILA A +L+ + F VLELNAS+ RGI +VR + +A
Sbjct: 37 LPNLLFFGPPGSGKTTSILAVAHELF-QGYFKERVLELNASNQRGIEMVRTTLKNYAMQD 95
Query: 366 TMHKSS---YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRC 422
H YKLIILDE+DA+T DAQ ALRR++E FT N RFC+ICNY+S+I P I SRC
Sbjct: 96 VTHYDGIPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRILPPISSRC 155
Query: 423 TRFRFGPLDSSLIMSRL 439
+FRF L ++ +RL
Sbjct: 156 IKFRFSALPKEIVSNRL 172
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E FT N RFC+ICNY+S+I P I SRC +FRF L ++ +RL + E+E +VT +
Sbjct: 128 MEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEA 187
Query: 61 KKAIIDLSDGDMRKVLNILQ 80
+A+ LS+GD+R + +LQ
Sbjct: 188 IQAVSILSEGDLRYGIGLLQ 207
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 100/248 (40%), Gaps = 62/248 (25%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP TLD++ +++I ++ L + ++ + G+ + + A+
Sbjct: 9 EKYRPKTLDDVQGQEEVIKLLK------SSLDSGLPNLLFFGPPGSGKTTSILAVAHELF 62
Query: 164 SARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---YKLIILDEADAMTNDAQN 220
K VLELNAS+ RGI +VR + +A H YKLIILDE+DA+T DAQ
Sbjct: 63 QGYFKERVLELNASNQRGIEMVRTTLKNYAMQDVTHYDGIPDYKLIILDESDALTPDAQT 122
Query: 221 ALRR-----------------------------------KLP------------------ 227
ALRR LP
Sbjct: 123 ALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFS 182
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
VT + +A+ LS+GD+R + +LQ + V + N G EIT I+
Sbjct: 183 VTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTPQDISNVAGVVPSKEITEIIHLCQ 242
Query: 288 NESMDLCY 295
N S++ Y
Sbjct: 243 NGSVNDLY 250
>gi|302830262|ref|XP_002946697.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
nagariensis]
gi|300267741|gb|EFJ51923.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
nagariensis]
Length = 328
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 102/151 (67%), Gaps = 6/151 (3%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R ++ LPHLLFYGPPGTGKT+T LA AR+LY + V+ELNASD+RGI +VR+
Sbjct: 28 LTRALETANLPHLLFYGPPGTGKTSTALAIARQLYGPELMKSRVMELNASDERGIHVVRE 87
Query: 357 QIFQFASTKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
++ FA+ YKL+ILDEAD+MT DAQ+ALRR +E ++ RF ICNY
Sbjct: 88 KVKSFAAAAVGAPVPGYPCPPYKLLILDEADSMTQDAQSALRRTMETYSRVTRFVFICNY 147
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+S+I + SRC +FRF PL +++ R+++
Sbjct: 148 VSRIIEPLASRCAKFRFKPLQPTVMAGRIEH 178
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 59/96 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL +++ R++++ E+E V + P
Sbjct: 132 METYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPTVMAGRIEHICEREGVTLAPGA 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF 96
+A+ +S GD+R+ + LQSAA V++ T+
Sbjct: 192 LEALSSVSGGDLRRAITTLQSAARLGGGTVDKATLL 227
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 18/134 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP ++E+ +++++T+ L+ +++ + L G + S +A
Sbjct: 7 VEKYRPKNVNEVAYQEEVVNTL--------TRALETANLPHLLFYGPPGTGKTSTALAIA 58
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------YKLIILDEAD 212
+ K V+ELNASD+RGI +VR+++ FA+ YKL+ILDEAD
Sbjct: 59 RQLYGPELMKSRVMELNASDERGIHVVREKVKSFAAAAVGAPVPGYPCPPYKLLILDEAD 118
Query: 213 AMTNDAQNALRRKL 226
+MT DAQ+ALRR +
Sbjct: 119 SMTQDAQSALRRTM 132
>gi|147905139|ref|NP_001082757.1| replication factor C (activator 1) 4, 37kDa [Xenopus laevis]
gi|34097966|dbj|BAC82198.1| replication factor C p37 subunit [Xenopus laevis]
gi|120537910|gb|AAI29743.1| RFC2 protein [Xenopus laevis]
Length = 363
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 76/142 (53%), Positives = 101/142 (71%), Gaps = 7/142 (4%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA-- 362
+LP+LLFYGPPGTGKT+TILA +R+LY F VLELNASD+RGI +VR+++ FA
Sbjct: 69 DLPNLLFYGPPGTGKTSTILAASRELYGPELFRQRVLELNASDERGIQVVREKVKNFAQL 128
Query: 363 ---STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
T++ K +K+IILDEAD+MT+ AQ ALRR +EK + RFC+ICNY+S+I
Sbjct: 129 TVGGTRSDGKPCPPFKIIILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEP 188
Query: 418 IQSRCTRFRFGPLDSSLIMSRL 439
+ SRC++FRF PL + RL
Sbjct: 189 LTSRCSKFRFKPLADKIQTQRL 210
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + E+E V +T +
Sbjct: 166 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLADKIQTQRLLSICEKENVQITNEA 225
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++++S+GD+RK + LQSAA E+ E+ +
Sbjct: 226 ISCLVEVSEGDLRKAITFLQSAARLTRGKEITEEIV 261
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 108/246 (43%), Gaps = 73/246 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +DE+ ++++ ++ L+ +D+ L G + S ++AA
Sbjct: 40 VEKYRPKCVDEVAFQDEVVAVLKKS--------LQGADLPNLLFYGPPGTGKTSTILAAS 91
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLIILDEA 211
+ + VLELNASD+RGI +VR+++ FA T++ K +K+IILDEA
Sbjct: 92 RELYGPELFRQRVLELNASDERGIQVVREKVKNFAQLTVGGTRSDGKPCPPFKIIILDEA 151
Query: 212 DAMTNDAQNALRRKL---------------------PVTPDGKK---------------- 234
D+MT+ AQ ALRR + P+T K
Sbjct: 152 DSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLADKIQTQRLL 211
Query: 235 ----------------AIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVGYPTKT 277
++++S+GD+RK + LQSAA E+ E+ V G K
Sbjct: 212 SICEKENVQITNEAISCLVEVSEGDLRKAITFLQSAARLTRGKEITEEIVTEIAGVVPKE 271
Query: 278 EITNIL 283
+ ++L
Sbjct: 272 TLDSVL 277
>gi|67478786|ref|XP_654775.1| Replication factor C subunit 4 [Entamoeba histolytica HM-1:IMSS]
gi|56471850|gb|EAL49389.1| Replication factor C subunit 4, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449704169|gb|EMD44462.1| replication factor C subunit 4, putative [Entamoeba histolytica
KU27]
Length = 329
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/137 (54%), Positives = 97/137 (70%), Gaps = 4/137 (2%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LP+LLF+GPPG+GKTT+ILA A +L+ + F VLELNAS+ RGI +VR + +A
Sbjct: 37 LPNLLFFGPPGSGKTTSILAVAHELF-QGYFKERVLELNASNQRGIEMVRTTLKNYAMQD 95
Query: 366 TMHKSS---YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRC 422
H YKLIILDE+DA+T DAQ ALRR++E FT N RFC+ICNY+S+I P I SRC
Sbjct: 96 VTHYDGTPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRILPPISSRC 155
Query: 423 TRFRFGPLDSSLIMSRL 439
+FRF L ++ +RL
Sbjct: 156 IKFRFSALPKEIVSNRL 172
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E FT N RFC+ICNY+S+I P I SRC +FRF L ++ +RL + E+E +VT +
Sbjct: 128 MEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEA 187
Query: 61 KKAIIDLSDGDMRKVLNILQ 80
+A+ LS+GD+R + +LQ
Sbjct: 188 IQAVSILSEGDLRYGIGLLQ 207
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 100/248 (40%), Gaps = 62/248 (25%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP TLD++ +++I ++ L + ++ + G+ + + A+
Sbjct: 9 EKYRPKTLDDVQGQEEVIKLLK------SSLNSGLPNLLFFGPPGSGKTTSILAVAHELF 62
Query: 164 SARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---YKLIILDEADAMTNDAQN 220
K VLELNAS+ RGI +VR + +A H YKLIILDE+DA+T DAQ
Sbjct: 63 QGYFKERVLELNASNQRGIEMVRTTLKNYAMQDVTHYDGTPDYKLIILDESDALTPDAQT 122
Query: 221 ALRR-----------------------------------KLP------------------ 227
ALRR LP
Sbjct: 123 ALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFS 182
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
VT + +A+ LS+GD+R + +LQ + V + N G EIT I+
Sbjct: 183 VTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTPQDISNVAGVVPSKEITEIIHLCQ 242
Query: 288 NESMDLCY 295
N S++ Y
Sbjct: 243 NGSVNDLY 250
>gi|407043555|gb|EKE42013.1| replication factor C subunit 4, putative [Entamoeba nuttalli P19]
Length = 329
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/137 (54%), Positives = 97/137 (70%), Gaps = 4/137 (2%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LP+LLF+GPPG+GKTT+ILA A +L+ + F VLELNAS+ RGI +VR + +A
Sbjct: 37 LPNLLFFGPPGSGKTTSILAVAHELF-QGYFKERVLELNASNQRGIEMVRTTLKNYAMQD 95
Query: 366 TMHKSS---YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRC 422
H YKLIILDE+DA+T DAQ ALRR++E FT N RFC+ICNY+S+I P I SRC
Sbjct: 96 VTHYDGIPDYKLIILDESDALTPDAQTALRRMMEDFTKNTRFCLICNYISRILPPISSRC 155
Query: 423 TRFRFGPLDSSLIMSRL 439
+FRF L ++ +RL
Sbjct: 156 IKFRFSALPKEIVSNRL 172
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E FT N RFC+ICNY+S+I P I SRC +FRF L ++ +RL + E+E +VT +
Sbjct: 128 MEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNEA 187
Query: 61 KKAIIDLSDGDMRKVLNILQ 80
+A+ LS+GD+R + +LQ
Sbjct: 188 IQAVSILSEGDLRYGIGLLQ 207
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 100/248 (40%), Gaps = 62/248 (25%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP TLD++ +++I ++ L + ++ + G+ + + A+
Sbjct: 9 EKYRPKTLDDVQGQEEVIKLLK------SSLNSGLPNLLFFGPPGSGKTTSILAVAHELF 62
Query: 164 SARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---YKLIILDEADAMTNDAQN 220
K VLELNAS+ RGI +VR + +A H YKLIILDE+DA+T DAQ
Sbjct: 63 QGYFKERVLELNASNQRGIEMVRTTLKNYAMQDVTHYDGIPDYKLIILDESDALTPDAQT 122
Query: 221 ALRR-----------------------------------KLP------------------ 227
ALRR LP
Sbjct: 123 ALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFS 182
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
VT + +A+ LS+GD+R + +LQ + V + N G EIT I+
Sbjct: 183 VTNEAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTPQDISNVAGVVPSKEITEIIHLCQ 242
Query: 288 NESMDLCY 295
N S++ Y
Sbjct: 243 NGSVNDLY 250
>gi|151945136|gb|EDN63387.1| replication factor C subunit 2 [Saccharomyces cerevisiae YJM789]
gi|256273083|gb|EEU08038.1| Rfc2p [Saccharomyces cerevisiae JAY291]
gi|259147531|emb|CAY80782.1| Rfc2p [Saccharomyces cerevisiae EC1118]
gi|323336956|gb|EGA78213.1| Rfc2p [Saccharomyces cerevisiae Vin13]
gi|323347871|gb|EGA82132.1| Rfc2p [Saccharomyces cerevisiae Lalvin QA23]
gi|349579253|dbj|GAA24416.1| K7_Rfc2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764724|gb|EHN06245.1| Rfc2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 353
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 103/147 (70%), Gaps = 12/147 (8%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPH+LFYGPPGTGKT+TILA ++LY + +LELNASD+RGI IVR+++ FA
Sbjct: 58 LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARL- 116
Query: 366 TMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
T+ K S YK+IILDEAD+MT DAQ+ALRR +E ++ RFC+ICNY+++I
Sbjct: 117 TVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF LD+S + RL +
Sbjct: 177 IDPLASRCSKFRFKALDASNAIDRLRF 203
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 13/127 (10%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD+S + RL ++ EQE V
Sbjct: 157 METYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGV 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAA-------------TAHADEVNEDTIFTLLVSRVEKYR 107
+ I+D+S GD+R+ + +LQSA+ + +E+ +L+ VEK +
Sbjct: 217 LERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVK 276
Query: 108 PSTLDEL 114
DE+
Sbjct: 277 SGDFDEI 283
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 24/139 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LDE+ + ++ ++ LK +++ + L G + S ++A
Sbjct: 28 VEKYRPKNLDEVTAQDHAVTVLK--------KTLKSANLPHMLFYGPPGTGKTSTILALT 79
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----------YKLII 207
+ K +LELNASD+RGI IVR+++ FA T+ K S YK+II
Sbjct: 80 KELYGPDLMKSRILELNASDERGISIVREKVKNFARL-TVSKPSKHDLENYPCPPYKIII 138
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEAD+MT DAQ+ALRR +
Sbjct: 139 LDEADSMTADAQSALRRTM 157
>gi|190409543|gb|EDV12808.1| replication factor C subunit 2 [Saccharomyces cerevisiae RM11-1a]
Length = 353
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 103/147 (70%), Gaps = 12/147 (8%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPH+LFYGPPGTGKT+TILA ++LY + +LELNASD+RGI IVR+++ FA
Sbjct: 58 LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARL- 116
Query: 366 TMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
T+ K S YK+IILDEAD+MT DAQ+ALRR +E ++ RFC+ICNY+++I
Sbjct: 117 TVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF LD+S + RL +
Sbjct: 177 IDPLASRCSKFRFKALDASNAIDRLRF 203
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 13/127 (10%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD+S + RL ++ EQE V
Sbjct: 157 METYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGV 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAA-------------TAHADEVNEDTIFTLLVSRVEKYR 107
+ I+D+S GD+R+ + +LQSA+ + +E+ +L+ VEK +
Sbjct: 217 LERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVK 276
Query: 108 PSTLDEL 114
DE+
Sbjct: 277 SGDFDEI 283
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 77/139 (55%), Gaps = 24/139 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LDE V+ QD T+ + LK +++ + L G + S ++A
Sbjct: 28 VEKYRPKNLDE-VTAQDHAVTV-------LKKTLKSANLPHMLFYGPPGTGKTSTILALT 79
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----------YKLII 207
+ K +LELNASD+RGI IVR+++ FA T+ K S YK+II
Sbjct: 80 KELYGPDLMKSRILELNASDERGISIVREKVKNFARL-TVSKPSKHDLENYPCPPYKIII 138
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEAD+MT DAQ+ALRR +
Sbjct: 139 LDEADSMTADAQSALRRTM 157
>gi|315042534|ref|XP_003170643.1| replication factor C subunit 2 [Arthroderma gypseum CBS 118893]
gi|311344432|gb|EFR03635.1| replication factor C subunit 2 [Arthroderma gypseum CBS 118893]
Length = 386
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 106/158 (67%), Gaps = 18/158 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYG PGTGKT+TILA ++ L+ A + VLELNASD+RGI IVR+
Sbjct: 57 LQRNLHASNLPHMLFYGSPGTGKTSTILAMSKSLFGPALVRSRVLELNASDERGINIVRE 116
Query: 357 QIFQFASTKTMHKSS---------------YKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+I FA MH S +K+IILDEAD+MT+DAQ+ALRR +EK++
Sbjct: 117 KIKDFAR---MHLSQPPPDPAYRSQYPCPPFKIIILDEADSMTHDAQSALRRTMEKYSRI 173
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RFC++CNY+++I + SRC++FRF LD S +RL
Sbjct: 174 TRFCLVCNYVTRIIDPVASRCSKFRFKVLDGSAAQNRL 211
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 78/143 (54%), Gaps = 30/143 (20%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TLD++ + IS ++ L S++ + L G+ + S ++A
Sbjct: 36 VEKYRPKTLDDVTAQDHTISVLQ--------RNLHASNLPHMLFYGSPGTGKTSTILAMS 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------------Y 203
F A + VLELNASD+RGI IVR++I FA MH S +
Sbjct: 88 KSLFGPALVRSRVLELNASDERGINIVREKIKDFAR---MHLSQPPPDPAYRSQYPCPPF 144
Query: 204 KLIILDEADAMTNDAQNALRRKL 226
K+IILDEAD+MT+DAQ+ALRR +
Sbjct: 145 KIIILDEADSMTHDAQSALRRTM 167
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 55/83 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RFC++CNY+++I + SRC++FRF LD S +RL + EK+++ +
Sbjct: 167 MEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKVLDGSAAQNRLVEIARMEKLDLEDNV 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++ SDGD+RK + +QS+A
Sbjct: 227 VETLLRCSDGDLRKAITFMQSSA 249
>gi|398365131|ref|NP_012602.3| Rfc2p [Saccharomyces cerevisiae S288c]
gi|730502|sp|P40348.1|RFC2_YEAST RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2; AltName: Full=Activator 1 41 kDa subunit
gi|498463|dbj|BAA05858.1| Rfc2 protein [Saccharomyces cerevisiae]
gi|841464|gb|AAC49061.1| Rfc2p [Saccharomyces cerevisiae]
gi|1015747|emb|CAA89596.1| RFC2 [Saccharomyces cerevisiae]
gi|1019690|gb|AAB39294.1| ORF YJR068w [Saccharomyces cerevisiae]
gi|285812957|tpg|DAA08855.1| TPA: Rfc2p [Saccharomyces cerevisiae S288c]
gi|392298494|gb|EIW09591.1| Rfc2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 353
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 102/146 (69%), Gaps = 10/146 (6%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA--- 362
LPH+LFYGPPGTGKT+TILA ++LY + +LELNASD+RGI IVR+++ FA
Sbjct: 58 LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLT 117
Query: 363 -STKTMHK------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
S + H YK+IILDEAD+MT DAQ+ALRR +E ++ RFC+ICNY+++I
Sbjct: 118 VSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRII 177
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF LD+S + RL +
Sbjct: 178 DPLASRCSKFRFKALDASNAIDRLRF 203
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 13/127 (10%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD+S + RL ++ EQE V
Sbjct: 157 METYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGV 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAA-------------TAHADEVNEDTIFTLLVSRVEKYR 107
+ I+D+S GD+R+ + +LQSA+ + +E+ +L+ VEK +
Sbjct: 217 LERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVK 276
Query: 108 PSTLDEL 114
DE+
Sbjct: 277 SGDFDEI 283
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LDE+ + ++ ++ LK +++ + L G + S ++A
Sbjct: 28 VEKYRPKNLDEVTAQDHAVTVLK--------KTLKSANLPHMLFYGPPGTGKTSTILALT 79
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA----STKTMHK------SSYKLIIL 208
+ K +LELNASD+RGI IVR+++ FA S + H YK+IIL
Sbjct: 80 KELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIIL 139
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 140 DEADSMTADAQSALRRTM 157
>gi|430814613|emb|CCJ28174.1| unnamed protein product [Pneumocystis jirovecii]
Length = 967
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 98/141 (69%), Gaps = 5/141 (3%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPHLLFYG PGTGKT+TILA A +L+ + VLELNASD+RGI I+R+++ FA
Sbjct: 53 LPHLLFYGSPGTGKTSTILALANELFGMELMKSRVLELNASDERGISIIREKVKNFARIA 112
Query: 366 TMHKSS-----YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQS 420
+ S YK+IILDEAD+MT DAQ+ALRR +E ++ RFC+ICNY+++I + S
Sbjct: 113 VSNSSEHSCPPYKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYITRIIGPLAS 172
Query: 421 RCTRFRFGPLDSSLIMSRLDY 441
RC++F+F PL M +L Y
Sbjct: 173 RCSKFQFKPLSFQHSMEKLKY 193
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 77/135 (57%), Gaps = 13/135 (9%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIEIP-ESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 157
++ VEKYRP TLD++ IS ++ +SM + +L + + GT + + A
Sbjct: 19 MIPWVEKYRPQTLDQVAFQDHAISVLKKSLQSMNLPHLL------FYGSPGTGKTSTILA 72
Query: 158 LIAA-FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----YKLIILDEA 211
L F K VLELNASD+RGI I+R+++ FA + S YK+IILDEA
Sbjct: 73 LANELFGMELMKSRVLELNASDERGISIIREKVKNFARIAVSNSSEHSCPPYKIIILDEA 132
Query: 212 DAMTNDAQNALRRKL 226
D+MT DAQ+ALRR +
Sbjct: 133 DSMTQDAQSALRRTM 147
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++F+F PL M +L Y+ E V
Sbjct: 147 METYSKITRFCLICNYITRIIGPLASRCSKFQFKPLSFQHSMEKLKYIASCENVKYDKGV 206
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
+ +I+ S+GD+RK + LQSAA E N+ ++
Sbjct: 207 IEMLIEQSNGDLRKAITFLQSAARLVDSEPNKSSL 241
>gi|357463531|ref|XP_003602047.1| Replication factor C subunit [Medicago truncatula]
gi|357520353|ref|XP_003630465.1| Replication factor C subunit [Medicago truncatula]
gi|217073528|gb|ACJ85124.1| unknown [Medicago truncatula]
gi|355491095|gb|AES72298.1| Replication factor C subunit [Medicago truncatula]
gi|355524487|gb|AET04941.1| Replication factor C subunit [Medicago truncatula]
gi|388492316|gb|AFK34224.1| unknown [Medicago truncatula]
Length = 339
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 97/149 (65%), Gaps = 8/149 (5%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
++ PH+LFYGPPGTGKTTT LA A +L+ + + VLELNASDDRGI +VR +I
Sbjct: 37 LETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKD 96
Query: 361 FASTKTMHKSS--------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
FA+ YK+I+LDEAD+MT DAQNALRR +E ++ RF ICNY+S
Sbjct: 97 FAAVAVGTNKPKNGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 156
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+I + SRC +FRF PL ++ SR+ Y
Sbjct: 157 RIIEPLASRCAKFRFKPLTEEIMSSRIVY 185
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 107/268 (39%), Gaps = 74/268 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + ++ ++++ ++ L+ + L G + + +A
Sbjct: 12 VEKYRPKQVKDVAHQEEVVR--------VLTNTLETGSCPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS--------YKLIILDE 210
F K VLELNASDDRGI +VR +I FA+ YK+I+LDE
Sbjct: 64 HQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYPCPPYKIIVLDE 123
Query: 211 ADAMTNDAQNALRRKL---------------------------------PVT-------- 229
AD+MT DAQNALRR + P+T
Sbjct: 124 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMSSRI 183
Query: 230 ------------PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKT 277
+G + ++S GD+R+ + LQSAA ++ + + G
Sbjct: 184 VYICKEEGIYLDAEGLSTLSNISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIVPAE 243
Query: 278 EITNILRWLLNESMDLCYK-INRFIDEN 304
+ +L+ + + DL K +N FI E
Sbjct: 244 VVEALLKACRSGNFDLANKEVNNFIAEG 271
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ SR+ Y+ ++E + + +G
Sbjct: 139 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMSSRIVYICKEEGIYLDAEG 198
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++S GD+R+ + LQSAA
Sbjct: 199 LSTLSNISQGDLRRAITYLQSAA 221
>gi|45269731|gb|AAS56246.1| YJR068W [Saccharomyces cerevisiae]
Length = 353
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 102/146 (69%), Gaps = 10/146 (6%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA--- 362
LPH+LFYGPPGTGKT+TILA ++LY + +LELNASD+RGI IVR+++ FA
Sbjct: 58 LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLT 117
Query: 363 -STKTMHK------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
S + H YK+IILDEAD+MT DAQ+ALRR +E ++ RFC+ICNY+++I
Sbjct: 118 VSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRII 177
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF LD+S + RL +
Sbjct: 178 DPLASRCSKFRFKALDASNAIDRLRF 203
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 13/127 (10%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD+S + RL ++ EQE V
Sbjct: 157 METYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGV 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAA-------------TAHADEVNEDTIFTLLVSRVEKYR 107
+ I+D+S GD+R+ + +LQSA+ + +E+ +L+ VEK +
Sbjct: 217 LERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVK 276
Query: 108 PSTLDEL 114
DE+
Sbjct: 277 SGDFDEI 283
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LDE+ + ++ ++ LK +++ + L G + S ++A
Sbjct: 28 VEKYRPKNLDEVTAQDHAVTVLK--------KTLKSANLPHMLFYGPPGTGKTSTILALT 79
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA----STKTMHK------SSYKLIIL 208
+ K +LELNASD+RGI IVR+++ FA S + H YK+IIL
Sbjct: 80 KELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIIL 139
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 140 DEADSMTADAQSALRRTM 157
>gi|322797318|gb|EFZ19436.1| hypothetical protein SINV_09794 [Solenopsis invicta]
Length = 353
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 111/173 (64%), Gaps = 22/173 (12%)
Query: 276 KTEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ 335
+TE+ N++R + ++ + P++LFYGPPGTGKT+ I A AR+++ +
Sbjct: 82 QTEVVNVIR--------------QAMEHGDFPNMLFYGPPGTGKTSIIHAAARQMFG-SM 126
Query: 336 FNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQ 388
+ +LELNASDDRGI +VRD+I FA + +K++ILDEAD+MT AQ
Sbjct: 127 YKDRILELNASDDRGIQVVRDKIKSFALRRANPNGPDGKKCPPFKIVILDEADSMTGAAQ 186
Query: 389 NALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ALRRI+EK + + RFC++CNYLS+I I SRCT+FRF PL ++RL+Y
Sbjct: 187 TALRRIMEKESHSTRFCLVCNYLSRIIKPIASRCTKFRFKPLTDEKSIARLEY 239
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + + RFC++CNYLS+I I SRCT+FRF PL ++RL+Y+ +E +
Sbjct: 193 MEKESHSTRFCLVCNYLSRIIKPIASRCTKFRFKPLTDEKSIARLEYICNEENLKADRSV 252
Query: 61 KKAIIDLSDGDMRKVLNILQS 81
+ I+ S GD+R+ + LQS
Sbjct: 253 LEKIVQASGGDLRQAVMCLQS 273
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 70/137 (51%), Gaps = 20/137 (14%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
L VEKYRP +D++V ++++ I ++ D L G + S +
Sbjct: 64 LTPWVEKYRPRNVDDIVEQTEVVNVIR--------QAMEHGDFPNMLFYGPPGTGKTSII 115
Query: 159 IAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS-------SYKLII 207
AA F S K +LELNASDDRGI +VRD+I FA + +K++I
Sbjct: 116 HAAARQMFGSMY-KDRILELNASDDRGIQVVRDKIKSFALRRANPNGPDGKKCPPFKIVI 174
Query: 208 LDEADAMTNDAQNALRR 224
LDEAD+MT AQ ALRR
Sbjct: 175 LDEADSMTGAAQTALRR 191
>gi|357160682|ref|XP_003578842.1| PREDICTED: replication factor C subunit 4-like [Brachypodium
distachyon]
Length = 339
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 76/142 (53%), Positives = 98/142 (69%), Gaps = 7/142 (4%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LPH+LFYGPPGTGKTTT LA A +LY + + VLELNASD+RGI +VR +I FA+
Sbjct: 41 DLPHMLFYGPPGTGKTTTALAIAYQLYGPELYKSRVLELNASDERGINVVRTKIKDFAAV 100
Query: 365 K--TMHKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
T K Y K+IILDEAD+MT DAQNALRR +E ++ RF ICNY+S+I
Sbjct: 101 AVGTARKGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 160
Query: 418 IQSRCTRFRFGPLDSSLIMSRL 439
+ SRC +FRF PL ++ +R+
Sbjct: 161 LASRCAKFRFKPLSEDVMTNRI 182
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 72/135 (53%), Gaps = 19/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + ++ ++++ + L+ +D+ + L G + + +A
Sbjct: 12 VEKYRPRQVKDVAHQEEVVRVLTN--------TLQTADLPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK--TMHKSSY-----KLIILDEA 211
+ K VLELNASD+RGI +VR +I FA+ T K Y K+IILDEA
Sbjct: 64 YQLYGPELYKSRVLELNASDERGINVVRTKIKDFAAVAVGTARKGGYPCPPYKIIILDEA 123
Query: 212 DAMTNDAQNALRRKL 226
D+MT DAQNALRR +
Sbjct: 124 DSMTEDAQNALRRTM 138
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ +R+ ++ +E + +
Sbjct: 138 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMTNRILHICHEEGLTLDAQA 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ + GD+R+ + LQSAA
Sbjct: 198 LSTLSAICQGDLRRAITYLQSAA 220
>gi|171185161|ref|YP_001794080.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170934373|gb|ACB39634.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 319
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 100/146 (68%), Gaps = 2/146 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ +PHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGI ++R
Sbjct: 27 RLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGINVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S I
Sbjct: 86 ERVKEFARTAPI-KAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSGII 144
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSR RF PL +++RL Y
Sbjct: 145 EPIQSRVVMVRFNPLPKDAVIARLRY 170
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 111/243 (45%), Gaps = 68/243 (27%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLK--MSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP + DE+V +++ +S L + V M + + GT + L
Sbjct: 8 EKYRPRSFDEVVDLEEV-------KSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARE 60
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ A
Sbjct: 61 LYGEYWRENTLELNASDERGINVIRERVKEFARTAPI-KAPFKLVILDEADNMTSDAQQA 119
Query: 222 LRRKL---------------------------------PVTPD-------------GKKA 235
LRR + P+ D G KA
Sbjct: 120 LRRIMEIYAQNTRFILLANYVSGIIEPIQSRVVMVRFNPLPKDAVIARLRYIAENEGIKA 179
Query: 236 -------IIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
I + + GDMRK +N LQ AA A + E+ E+TV ++G + +LR L+
Sbjct: 180 SDDALETIFEFTQGDMRKAINALQIAA-ATSREITEETVAKALGLVS----PKLLRETLH 234
Query: 289 ESM 291
E++
Sbjct: 235 EAV 237
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S I IQSR RF PL +++RL Y+ E E + + D
Sbjct: 124 MEIYAQNTRFILLANYVSGIIEPIQSRVVMVRFNPLPKDAVIARLRYIAENEGIKASDDA 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV 115
+ I + + GDMRK +N LQ AA A + E+ E+T+ L K TL E V
Sbjct: 184 LETIFEFTQGDMRKAINALQIAA-ATSREITEETVAKALGLVSPKLLRETLHEAV 237
>gi|323304258|gb|EGA58032.1| Rfc2p [Saccharomyces cerevisiae FostersB]
Length = 348
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 102/146 (69%), Gaps = 10/146 (6%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA--- 362
LPH+LFYGPPGTGKT+TILA ++LY + +LELNASD+RGI IVR+++ FA
Sbjct: 58 LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLT 117
Query: 363 -STKTMHK------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
S + H YK+IILDEAD+MT DAQ+ALRR +E ++ RFC+ICNY+++I
Sbjct: 118 VSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRII 177
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF LD+S + RL +
Sbjct: 178 DPLASRCSKFRFKALDASNAIDRLRF 203
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 13/127 (10%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD+S + RL ++ EQE V
Sbjct: 157 METYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGV 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAA-------------TAHADEVNEDTIFTLLVSRVEKYR 107
+ I+D+S GD+R+ + +LQSA+ + +E+ +L+ VEK +
Sbjct: 217 LERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVK 276
Query: 108 PSTLDEL 114
DE+
Sbjct: 277 SGDFDEI 283
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LDE+ + ++ ++ LK +++ + L G + S ++A
Sbjct: 28 VEKYRPKNLDEVTAQDHAVTVLK--------KTLKSANLPHMLFYGPPGTGKTSTILALT 79
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA----STKTMHK------SSYKLIIL 208
+ K +LELNASD+RGI IVR+++ FA S + H YK+IIL
Sbjct: 80 KELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIIL 139
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 140 DEADSMTADAQSALRRTM 157
>gi|52317098|ref|NP_999902.2| replication factor C subunit 4 [Danio rerio]
gi|49619077|gb|AAT68123.1| replication factor C subunit RFC4 [Danio rerio]
Length = 358
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 107/150 (71%), Gaps = 7/150 (4%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+LY + VLELNASD+RGI +VR+
Sbjct: 57 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPDLYRQRVLELNASDERGIQVVRE 116
Query: 357 QIFQF-----ASTKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ +F A T+ K+ +K+IILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 117 KVKRFAQLTVAGTRPDGKTCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICN 176
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC++FRF PL + + R+
Sbjct: 177 YVSRIIEPLTSRCSKFRFKPLANDVQQERI 206
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + + R+ + +E + T +G
Sbjct: 162 MEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLANDVQQERILEICRKENLKYTTEG 221
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTIFTL 98
A++ +S+GD+RK + LQS A +++ E+ E TI +
Sbjct: 222 VDALVRVSEGDLRKAITFLQSGARLNSEREITEQTIIEI 260
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 121/266 (45%), Gaps = 89/266 (33%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 33 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 84
Query: 160 AAFNSARD-------KLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKL 205
AA AR+ + VLELNASD+RGI +VR+++ +FA T+ K+ +K+
Sbjct: 85 AA---ARELYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCPPFKI 141
Query: 206 IILDEADAMTNDAQNALRR----------------------------------------- 224
IILDEAD+MT+ AQ ALRR
Sbjct: 142 IILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLANDV 201
Query: 225 ------------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTVYNSV 271
L T +G A++ +S+GD+RK + LQS A +++ E+ E T+
Sbjct: 202 QQERILEICRKENLKYTTEGVDALVRVSEGDLRKAITFLQSGARLNSEREITEQTIIEIA 261
Query: 272 G-YPTKTEITNILRWLLNESMDLCYK 296
G P K +++ LL+ +CYK
Sbjct: 262 GVVPPK-----VIQSLLH----ICYK 278
>gi|440465527|gb|ELQ34846.1| replication factor C subunit 2 [Magnaporthe oryzae Y34]
gi|440481017|gb|ELQ61644.1| replication factor C subunit 2 [Magnaporthe oryzae P131]
Length = 323
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 102/145 (70%), Gaps = 10/145 (6%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPH+LFYGPPGTGKT+T+LA A++L+ + VLELNASD+RGI IVR+++ FA +
Sbjct: 6 LPHMLFYGPPGTGKTSTVLALAKELFGPELMKSRVLELNASDERGISIVREKVKDFARMQ 65
Query: 366 TM-----HKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+KS Y K+IILDEAD+MT DAQ+ALRR +E ++ RFC+ICNY+++I
Sbjct: 66 LTNPPPGYKSKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRII 125
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLD 440
+ SRC++FRF LD SRL+
Sbjct: 126 DPLASRCSKFRFKSLDQENARSRLE 150
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD SRL+ + +E V +
Sbjct: 105 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQENARSRLEDIAAKEGVALEDGA 164
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+RK + LQSAA
Sbjct: 165 VDALIKCSEGDLRKAITFLQSAA 187
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 47/69 (68%), Gaps = 10/69 (14%)
Query: 168 KLEVLELNASDDRGIGIVRDQIFQFASTKTM-----HKSSY-----KLIILDEADAMTND 217
K VLELNASD+RGI IVR+++ FA + +KS Y K+IILDEAD+MT D
Sbjct: 37 KSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYKSKYPCPPFKIIILDEADSMTQD 96
Query: 218 AQNALRRKL 226
AQ+ALRR +
Sbjct: 97 AQSALRRTM 105
>gi|453082922|gb|EMF10969.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 406
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/184 (42%), Positives = 115/184 (62%), Gaps = 23/184 (12%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + LPH+LFYGPPGTGKT+T+LA A++LY + VLELNASD+RGI IVR+
Sbjct: 59 LRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYGPELVKSRVLELNASDERGISIVRE 118
Query: 357 QIFQFAST------------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRF 404
++ FA K YK+IILDEAD+MT DAQ+ALRR +E ++ RF
Sbjct: 119 KVKDFARMQLSNPPHAEEYRKKYPCPPYKIIILDEADSMTQDAQSALRRTMETYSKITRF 178
Query: 405 CIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKG 464
C++CNY+++I + SRC++FRF LD R+ +DI+ +++ +K+++G
Sbjct: 179 CLVCNYVTRIIDPLASRCSKFRFKSLDEGNAGKRI--EDIA---------RLENVKLDEG 227
Query: 465 LALT 468
+ T
Sbjct: 228 VVET 231
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 73/140 (52%), Gaps = 24/140 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +LD++ + ++ + L+ +++ + L G + S ++A
Sbjct: 38 VEKYRPRSLDDIAAQDHTVTVLR--------RTLQSANLPHMLFYGPPGTGKTSTVLALA 89
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST------------KTMHKSSYKLI 206
+ K VLELNASD+RGI IVR+++ FA K YK+I
Sbjct: 90 KQLYGPELVKSRVLELNASDERGISIVREKVKDFARMQLSNPPHAEEYRKKYPCPPYKII 149
Query: 207 ILDEADAMTNDAQNALRRKL 226
ILDEAD+MT DAQ+ALRR +
Sbjct: 150 ILDEADSMTQDAQSALRRTM 169
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF LD R++ + E V +
Sbjct: 169 METYSKITRFCLVCNYVTRIIDPLASRCSKFRFKSLDEGNAGKRIEDIARLENVKLDEGV 228
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++ S+GD+RK + LQSAA
Sbjct: 229 VETLLRCSEGDLRKAITFLQSAA 251
>gi|254585047|ref|XP_002498091.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
gi|238940985|emb|CAR29158.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
Length = 352
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 98/144 (68%), Gaps = 10/144 (6%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA--- 362
LPH+LFYGPPGTGKT+TI A R+LY VLELNASD+RGI IVR+++ FA
Sbjct: 56 LPHMLFYGPPGTGKTSTIFALTRELYGPELSKTRVLELNASDERGIAIVREKVKNFARLT 115
Query: 363 ----STKTMHK---SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
S + + K YK+IILDEAD+MT DAQ+ALRR +E + RFC+ICNY+++I
Sbjct: 116 VSKPSKEALEKYPCPPYKIIILDEADSMTADAQSALRRTMENHSNVTRFCLICNYVTRII 175
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
+ SRC++FRF LD S + RL
Sbjct: 176 DPLASRCSKFRFKSLDESNAIGRL 199
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 74/138 (53%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LD++ + IS ++ L +++ + L G + S + A
Sbjct: 26 VEKYRPKKLDDVSAQDHTISVLK--------KTLTSANLPHMLFYGPPGTGKTSTIFALT 77
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA-------STKTMHK---SSYKLIIL 208
+ K VLELNASD+RGI IVR+++ FA S + + K YK+IIL
Sbjct: 78 RELYGPELSKTRVLELNASDERGIAIVREKVKNFARLTVSKPSKEALEKYPCPPYKIIIL 137
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 138 DEADSMTADAQSALRRTM 155
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 53/83 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RFC+ICNY+++I + SRC++FRF LD S + RL + + E V
Sbjct: 155 MENHSNVTRFCLICNYVTRIIDPLASRCSKFRFKSLDESNAIGRLKEISQLENVPHEEGA 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ I+++S+GDMR+ + +LQSAA
Sbjct: 215 LQRILEISNGDMRRAITLLQSAA 237
>gi|388505532|gb|AFK40832.1| unknown [Lotus japonicus]
Length = 342
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 99/149 (66%), Gaps = 8/149 (5%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
++ PH+LFYGPPGTGKTTT LA A +L+ + + VLELNASDDRGI +VR +I
Sbjct: 37 LETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKD 96
Query: 361 FAST--KTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
FA+ T K YK+I+LDEAD+MT DAQNALRR +E ++ RF ICNY+S
Sbjct: 97 FAAVAVGTNPKKGGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 156
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+I + SRC +FRF PL ++ SR+ Y
Sbjct: 157 RIIEPLASRCAKFRFKPLSEEIMSSRILY 185
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 57/98 (58%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ SR+ Y+ +E +++ +G
Sbjct: 139 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILYICNEEGLHLDAEG 198
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
+ +S GD+R+ + LQS+A ++ + ++
Sbjct: 199 LSTLSSISQGDLRRAITYLQSSARLFGSHISSKDLISV 236
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 20/136 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + + V++QD + + + L+ + L G + + +A
Sbjct: 12 VEKYRPKQVKD-VAYQDEVVRV-------LTNTLETGSCPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST--KTMHKSS------YKLIILDE 210
F K VLELNASDDRGI +VR +I FA+ T K YK+I+LDE
Sbjct: 64 HQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNPKKGGYPCPPYKIIVLDE 123
Query: 211 ADAMTNDAQNALRRKL 226
AD+MT DAQNALRR +
Sbjct: 124 ADSMTEDAQNALRRTM 139
>gi|344299747|gb|EGW30100.1| replication factor C, subunit RFC4 [Spathaspora passalidarum NRRL
Y-27907]
Length = 346
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 102/146 (69%), Gaps = 10/146 (6%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPH+LFYGPPGTGKT+TILA +++L+ + VLELNASD+RGI IVR +I FA
Sbjct: 48 LPHMLFYGPPGTGKTSTILALSKQLFGPNLSKSRVLELNASDERGINIVRSKIKNFARLT 107
Query: 366 TMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+ + YK+IILDEAD+MTNDAQ+ALRR +E ++ RFC+ICNY+++I
Sbjct: 108 ISNPTPEDLANYPCPPYKIIILDEADSMTNDAQSALRRTMETYSGMTRFCLICNYITRII 167
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF L++ ++RL Y
Sbjct: 168 DPLASRCSKFRFKLLNNDDGLNRLKY 193
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 74/138 (53%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LD++ S + ++ ++ L +++ + L G + S ++A
Sbjct: 18 VEKYRPKNLDDVASQEHAVA--------ILKRTLATANLPHMLFYGPPGTGKTSTILALS 69
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
F K VLELNASD+RGI IVR +I FA + + YK+IIL
Sbjct: 70 KQLFGPNLSKSRVLELNASDERGINIVRSKIKNFARLTISNPTPEDLANYPCPPYKIIIL 129
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MTNDAQ+ALRR +
Sbjct: 130 DEADSMTNDAQSALRRTM 147
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 57/85 (67%), Gaps = 2/85 (2%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF L++ ++RL Y+ EQE + + +
Sbjct: 147 METYSGMTRFCLICNYITRIIDPLASRCSKFRFKLLNNDDGLNRLKYIAEQEDLTLDQEE 206
Query: 61 K--KAIIDLSDGDMRKVLNILQSAA 83
+ ++D+S GD+RK + LQSA+
Sbjct: 207 PVLQQVLDISGGDLRKAITYLQSAS 231
>gi|356515923|ref|XP_003526646.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 112/188 (59%), Gaps = 26/188 (13%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
++ PH+LFYGPPGTGKTTT LA A +L+ + + VLELNASDDRGI +VR +I
Sbjct: 37 LETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKD 96
Query: 361 FASTK---TMHKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
FA+ K+ Y K+I+LDEAD+MT DAQNALRR +E ++ RF ICNY+S
Sbjct: 97 FAAVAVGTNQCKNGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVS 156
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLAL-TDIL 471
+I + SRC +FRF PL ++ SR+ Y I E+GL L + L
Sbjct: 157 RIIEPLASRCAKFRFKPLSEEIMSSRILY-----------------ISQEEGLCLDAEAL 199
Query: 472 TEISLLVH 479
+ +S + H
Sbjct: 200 STLSFISH 207
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 20/136 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + + V+HQD + + + L+ + L G + + +A
Sbjct: 12 VEKYRPKQVKD-VAHQDEVVRV-------LTNTLETGSCPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK---TMHKSSY-----KLIILDE 210
F K VLELNASDDRGI +VR +I FA+ K+ Y K+I+LDE
Sbjct: 64 HQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIVLDE 123
Query: 211 ADAMTNDAQNALRRKL 226
AD+MT DAQNALRR +
Sbjct: 124 ADSMTEDAQNALRRTM 139
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 57/98 (58%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ SR+ Y+ ++E + + +
Sbjct: 139 METYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQEEGLCLDAEA 198
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
+ +S GD+R+ + LQSAA ++ + + ++
Sbjct: 199 LSTLSFISHGDLRRAITYLQSAARLFGSSISSENLISV 236
>gi|448408398|ref|ZP_21574193.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
gi|445674253|gb|ELZ26797.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
Length = 327
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 149/290 (51%), Gaps = 65/290 (22%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ ++D N+L H +F GP G GKTT+ A AR+LY + LELNASD+RGI
Sbjct: 35 DIVERLQSYVDRNDLSHFMFSGPAGIGKTTSATAIARELYGD-DWRDNFLELNASDERGI 93
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA T + Y++I LDEADA+T+DAQ ALRR +E+F+ NVRF + CNY
Sbjct: 94 DVVRDRIKNFART-SFGGYEYRIIFLDEADALTSDAQGALRRTMEQFSNNVRFILSCNYS 152
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY----DDISF----FNIIIWY---------- 453
S+I IQSRC FRF PL + + + + I F + +++
Sbjct: 153 SQIIDPIQSRCAVFRFAPLSDEAVAEEMRHIAGEEGIEFTDDGLDALVYAADGDMRKAIN 212
Query: 454 -----------------------IKIQEIK--IEKGLA---------LTDILTEISLL-- 477
K +EIK +++ LA L +LTE +
Sbjct: 213 ALQAASVTGDVVDEEAVYALTSTAKPEEIKEMVDQALAGDFTAARSTLDRLLTEEGIAGG 272
Query: 478 -----VHR----LEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 518
+HR ++ + V L+ ++ + EYR+ G +E+IQL AL+A+
Sbjct: 273 DVIDQLHRSVWEFDLDDEAAVRLLDRIGETEYRITTGANERIQLEALLAS 322
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 101/188 (53%), Gaps = 28/188 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ NVRF + CNY S+I IQSRC FRF PL + + ++ +E + T DG
Sbjct: 136 MEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFAPLSDEAVAEEMRHIAGEEGIEFTDDG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-VSRVEKYRP----------- 108
A++ +DGDMRK +N LQ AA+ D V+E+ ++ L ++ E+ +
Sbjct: 196 LDALVYAADGDMRKAINALQ-AASVTGDVVDEEAVYALTSTAKPEEIKEMVDQALAGDFT 254
Query: 109 ---STLDELVSHQDI------------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
STLD L++ + I + ++ + V L+ ++ + EYR+ G +E+I
Sbjct: 255 AARSTLDRLLTEEGIAGGDVIDQLHRSVWEFDLDDEAAVRLLDRIGETEYRITTGANERI 314
Query: 154 QLSALIAA 161
QL AL+A+
Sbjct: 315 QLEALLAS 322
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 101/219 (46%), Gaps = 60/219 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP TLDE+V +DI+ ++ VD +S + AG + +A+
Sbjct: 19 IEKYRPQTLDEIVGQEDIVERLQ----SYVDRN-DLSHFMFSGPAGIGKTTSATAIAREL 73
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
+ LELNASD+RGI +VRD+I FA T + Y++I LDEADA+T+DAQ AL
Sbjct: 74 YGDDWRDNFLELNASDERGIDVVRDRIKNFART-SFGGYEYRIIFLDEADALTSDAQGAL 132
Query: 223 RRKL---------------------PV--------------------------------T 229
RR + P+ T
Sbjct: 133 RRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFAPLSDEAVAEEMRHIAGEEGIEFT 192
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
DG A++ +DGDMRK +N LQ AA+ D V+E+ VY
Sbjct: 193 DDGLDALVYAADGDMRKAINALQ-AASVTGDVVDEEAVY 230
>gi|357617013|gb|EHJ70534.1| replication factor C4 [Danaus plexippus]
Length = 350
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/143 (53%), Positives = 97/143 (67%), Gaps = 8/143 (5%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS 363
+LPHLLFYGPPGTGKT+ ILA AR+L+ VLELNASD+RGI ++RD++ FA
Sbjct: 61 GDLPHLLFYGPPGTGKTSAILAAARQLFGDIT-RERVLELNASDERGIQVIRDKVKTFAQ 119
Query: 364 TKTMHK-------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
+ YKL+ILDEAD+MT AQ ALRR +E+ T RFC+ICNY+S+I P
Sbjct: 120 LTVSNTRPDGRPCPPYKLVILDEADSMTTAAQAALRRTMERETRTTRFCLICNYVSRIIP 179
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
I SRC++FRF PL ++ RL
Sbjct: 180 PITSRCSKFRFKPLARENVIKRL 202
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 73/136 (53%), Gaps = 22/136 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP T+D++V +++ + L D+ + L G + SA++AA
Sbjct: 33 VEKYRPKTIDDIVDQGEVVQVLR--------ECLAGGDLPHLLFYGPPGTGKTSAILAAA 84
Query: 163 NS-----ARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-------SSYKLIILDE 210
R++ VLELNASD+RGI ++RD++ FA + YKL+ILDE
Sbjct: 85 RQLFGDITRER--VLELNASDERGIQVIRDKVKTFAQLTVSNTRPDGRPCPPYKLVILDE 142
Query: 211 ADAMTNDAQNALRRKL 226
AD+MT AQ ALRR +
Sbjct: 143 ADSMTTAAQAALRRTM 158
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+ T RFC+ICNY+S+I P I SRC++FRF PL ++ RL V + E V V DG
Sbjct: 158 MERETRTTRFCLICNYVSRIIPPITSRCSKFRFKPLARENVIKRLQEVCKSEAVEVG-DG 216
Query: 61 K--KAIIDLSDGDMRKVLNILQSA 82
+ +D GD+R+ L LQ
Sbjct: 217 EVLHQAVDTCGGDLRRALTALQCC 240
>gi|380016014|ref|XP_003691988.1| PREDICTED: replication factor C subunit 4-like [Apis florea]
Length = 357
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/145 (53%), Positives = 104/145 (71%), Gaps = 8/145 (5%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA- 362
+ P+LLFYGPPGTGKT+TILA AR+L+ + + VLELNASD+RGI +VR++I FA
Sbjct: 63 GDFPNLLFYGPPGTGKTSTILAAARQLFG-SLYKERVLELNASDERGIQVVREKIKSFAQ 121
Query: 363 ----STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
+ KS +K+IILDEAD+MT AQ ALRR +EK + + RFC+ICNY+S+I
Sbjct: 122 LTAGGIRDDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESHSTRFCLICNYVSRIIE 181
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRCT+FRF PL + I+ RL+Y
Sbjct: 182 PLTSRCTKFRFKPLGENKIIERLEY 206
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 71/125 (56%), Gaps = 9/125 (7%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + + RFC+ICNY+S+I + SRCT+FRF PL + I+ RL+Y+ ++E + V
Sbjct: 160 MEKESHSTRFCLICNYVSRIIEPLTSRCTKFRFKPLGENKIIERLEYICKEEDLKVEKPV 219
Query: 61 KKAIIDLSDGDMRKVLNILQSAA--TAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ 118
I+++S GD+R+ + LQS E+ D + ++ K+ LDEL+
Sbjct: 220 LLKIVEVSGGDLRRAITCLQSITKLKGKGIEITVDDVLEIIGIVPNKW----LDELI--- 272
Query: 119 DIIST 123
DI T
Sbjct: 273 DICKT 277
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 71/135 (52%), Gaps = 20/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + ++V +++ + LK D L G + S ++AA
Sbjct: 35 VEKYRPKNVKDVVEQTEVVEVLR--------QCLKGGDFPNLLFYGPPGTGKTSTILAAA 86
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLIILDEA 211
F S K VLELNASD+RGI +VR++I FA + KS +K+IILDEA
Sbjct: 87 RQLFGSLY-KERVLELNASDERGIQVVREKIKSFAQLTAGGIRDDGKSCPPFKIIILDEA 145
Query: 212 DAMTNDAQNALRRKL 226
D+MT AQ ALRR +
Sbjct: 146 DSMTGAAQAALRRTM 160
>gi|307178287|gb|EFN67059.1| Replication factor C subunit 4 [Camponotus floridanus]
Length = 357
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 109/173 (63%), Gaps = 22/173 (12%)
Query: 276 KTEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ 335
+TE+ N++R + + + P++LFYGPPGTGKT+ I A AR+++ +
Sbjct: 49 QTEVVNVIR--------------QAMKHGDFPNMLFYGPPGTGKTSIIHAAARQMFG-SM 93
Query: 336 FNAMVLELNASDDRGIGIVRDQIFQFASTKT-------MHKSSYKLIILDEADAMTNDAQ 388
+ +LELNASDDRGI +VR++I FA K +K+IILDEAD+MT AQ
Sbjct: 94 YKDRILELNASDDRGIQVVREKIKSFALRKANPIGPDGKKCPPFKIIILDEADSMTGAAQ 153
Query: 389 NALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ALRRI+EK + RFC++CNYLS+I I SRCT+FRF PL +SRL+Y
Sbjct: 154 TALRRIMEKEAHSTRFCLVCNYLSRIIKPIASRCTKFRFKPLSDEKSISRLEY 206
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 51/81 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC++CNYLS+I I SRCT+FRF PL +SRL+Y+ +E +
Sbjct: 160 MEKEAHSTRFCLVCNYLSRIIKPIASRCTKFRFKPLSDEKSISRLEYICNEENLKADRSV 219
Query: 61 KKAIIDLSDGDMRKVLNILQS 81
+ I++ S GD+R+ + LQS
Sbjct: 220 LEKIVEASGGDLRQAVMCLQS 240
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 70/137 (51%), Gaps = 20/137 (14%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
L VEKYRP +D++V ++++ I +K D L G + S +
Sbjct: 31 LTPWVEKYRPKNVDDIVEQTEVVNVIR--------QAMKHGDFPNMLFYGPPGTGKTSII 82
Query: 159 IAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKT-------MHKSSYKLII 207
AA F S K +LELNASDDRGI +VR++I FA K +K+II
Sbjct: 83 HAAARQMFGSMY-KDRILELNASDDRGIQVVREKIKSFALRKANPIGPDGKKCPPFKIII 141
Query: 208 LDEADAMTNDAQNALRR 224
LDEAD+MT AQ ALRR
Sbjct: 142 LDEADSMTGAAQTALRR 158
>gi|328794001|ref|XP_003251959.1| PREDICTED: replication factor C subunit 4-like, partial [Apis
mellifera]
Length = 303
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/145 (53%), Positives = 104/145 (71%), Gaps = 8/145 (5%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA- 362
+ P+LLFYGPPGTGKT+TILA AR+L+ + + VLELNASD+RGI +VR++I FA
Sbjct: 36 GDFPNLLFYGPPGTGKTSTILAAARQLFG-SLYKERVLELNASDERGIQVVREKIKSFAQ 94
Query: 363 ----STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
+ KS +K+I+LDEAD+MT AQ ALRR +EK + + RFC+ICNY+S+I
Sbjct: 95 LTAGGMRDDGKSCPPFKIIVLDEADSMTGAAQAALRRTMEKESHSTRFCLICNYVSRIIE 154
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRCT+FRF PL + I+ RL+Y
Sbjct: 155 PLTSRCTKFRFKPLGENKIIERLEY 179
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + + RFC+ICNY+S+I + SRCT+FRF PL + I+ RL+Y+ ++E + V
Sbjct: 133 MEKESHSTRFCLICNYVSRIIEPLTSRCTKFRFKPLGENKIIERLEYICKEEDLKVEKPV 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD--EVNEDTIFTLLVSRVEKYRPSTLDELV 115
I+++S GD+R+ + LQS E+ D + ++ +K+ LDEL+
Sbjct: 193 LLKIVEVSGGDLRRAITCLQSITKLKGKDIEITVDDVLEIIGIVPDKW----LDELI 245
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 72/135 (53%), Gaps = 20/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP ++++V +++ + LK D L G + S ++AA
Sbjct: 8 VEKYRPKNVEDVVEQTEVVEVLR--------QCLKGGDFPNLLFYGPPGTGKTSTILAAA 59
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLIILDEA 211
F S K VLELNASD+RGI +VR++I FA + KS +K+I+LDEA
Sbjct: 60 RQLFGSLY-KERVLELNASDERGIQVVREKIKSFAQLTAGGMRDDGKSCPPFKIIVLDEA 118
Query: 212 DAMTNDAQNALRRKL 226
D+MT AQ ALRR +
Sbjct: 119 DSMTGAAQAALRRTM 133
>gi|238484697|ref|XP_002373587.1| DNA replication factor C subunit Rfc2, putative [Aspergillus flavus
NRRL3357]
gi|220701637|gb|EED57975.1| DNA replication factor C subunit Rfc2, putative [Aspergillus flavus
NRRL3357]
Length = 320
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/144 (49%), Positives = 100/144 (69%), Gaps = 13/144 (9%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH 368
+LFYGPPGTGKT+TILA A+ L+ A + + +LELNASD+RGI IVR+++ FA + H
Sbjct: 1 MLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIAIVREKVKDFARVQLSH 60
Query: 369 KSS-------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+ +K+IILDEAD+MT DAQ+ALRR +E ++ RFC++CNY+++I
Sbjct: 61 PTGVDKSYFEKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRII 120
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
+ SRC++FRF PLD+S RL
Sbjct: 121 EPLASRCSKFRFKPLDNSAAGDRL 144
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 51/83 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF PLD+S RL + + E + +
Sbjct: 100 METYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRLAQIAKLENLELEDGV 159
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+I SDGD+R+ + +QS A
Sbjct: 160 VDKLIQCSDGDLRRAITYMQSGA 182
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 14/93 (15%)
Query: 148 GTSEKIQLSALIAA-FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---- 202
GT + + AL + F A + +LELNASD+RGI IVR+++ FA + H +
Sbjct: 8 GTGKTSTILALAKSLFGPALYRSRILELNASDERGIAIVREKVKDFARVQLSHPTGVDKS 67
Query: 203 ---------YKLIILDEADAMTNDAQNALRRKL 226
+K+IILDEAD+MT DAQ+ALRR +
Sbjct: 68 YFEKYPCPPFKIIILDEADSMTQDAQSALRRTM 100
>gi|70606693|ref|YP_255563.1| replication factor C small subunit [Sulfolobus acidocaldarius DSM
639]
gi|449066916|ref|YP_007433998.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449069188|ref|YP_007436269.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
gi|73914011|sp|Q4JAB0.1|RFCS_SULAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|68567341|gb|AAY80270.1| replication factor C [Sulfolobus acidocaldarius DSM 639]
gi|449035424|gb|AGE70850.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449037696|gb|AGE73121.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
Length = 325
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +F+ E +PHLLF GPPGTGKTT LA R LY + LELNASD+RGI
Sbjct: 24 EIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGN-NYRQYFLELNASDERGI 82
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R+++ +FA T + +K+I+LDEAD MT DAQ ALRR +E +T RF + CNYL
Sbjct: 83 DVIRNKVKEFARTVASNNVPFKVILLDEADNMTADAQQALRRTMELYTETTRFILACNYL 142
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI IQSR FRF PL +++RL
Sbjct: 143 SKIIEPIQSRTALFRFYPLKKEDVVNRL 170
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 100/189 (52%), Gaps = 31/189 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T RF + CNYLSKI IQSR FRF PL +++RL + + EKV P G
Sbjct: 126 MELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKVEFDPKG 185
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL--------------------V 100
+ I D++ GDMRK +N++Q AA+A+ ++ +T++ +L +
Sbjct: 186 IETIFDITQGDMRKAINVIQ-AASAYG-KITVETVYKVLGLAQPKEIREMLHLALSGKFL 243
Query: 101 SRVEKYRPSTLDELVSHQDII---------STIEIPESMLVDLVLKMSDIEYRLAAGTSE 151
+K R ++ +S +DII + I IP+ + V LV ++E+R+ G +
Sbjct: 244 QARDKLRELLINYGLSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVEFRIMEGADD 303
Query: 152 KIQLSALIA 160
+IQLSA +A
Sbjct: 304 EIQLSAFLA 312
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 110/240 (45%), Gaps = 64/240 (26%)
Query: 104 EKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP +LDE+V+ ++I+ ++ + E + L+ + GT + AL+
Sbjct: 9 EKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLL-------FAGPPGTGKTTAALALVRD 61
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R+++ +FA T + +K+I+LDEAD MT DAQ A
Sbjct: 62 LYGNNYRQYFLELNASDERGIDVIRNKVKEFARTVASNNVPFKVILLDEADNMTADAQQA 121
Query: 222 LRR-----------------------------------------------------KLPV 228
LRR K+
Sbjct: 122 LRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKVEF 181
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
P G + I D++ GDMRK +N++Q AA+A+ ++ +TVY +G EI +L L+
Sbjct: 182 DPKGIETIFDITQGDMRKAINVIQ-AASAYG-KITVETVYKVLGLAQPKEIREMLHLALS 239
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 455 KIQEIKIEKGLALTDILTEI--SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
K++E+ I GL+ DI+ ++ L + + IP+ + V LV ++E+R+ G ++IQL
Sbjct: 248 KLRELLINYGLSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVEFRIMEGADDEIQL 307
Query: 513 SALIA 517
SA +A
Sbjct: 308 SAFLA 312
>gi|398402105|ref|XP_003853207.1| replication factor C subunit 2 [Zymoseptoria tritici IPO323]
gi|339473089|gb|EGP88183.1| hypothetical protein MYCGRDRAFT_100072 [Zymoseptoria tritici
IPO323]
Length = 408
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 102/159 (64%), Gaps = 15/159 (9%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + LPH+LFYGPPGTGKT+T+LA A++LY VLELNASD+RGI IVR+
Sbjct: 56 LRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYGPELIKTRVLELNASDERGISIVRE 115
Query: 357 QIFQFASTKTMHKSS---------------YKLIILDEADAMTNDAQNALRRIIEKFTTN 401
++ FA + + S YK+IILDEAD+MT DAQ+ALRR +E ++
Sbjct: 116 KVKNFARMQLSNPPSGPAGEEYRKKYSCPPYKIIILDEADSMTQDAQSALRRTMETYSKI 175
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
RFC+ICNY+++I + SRC++FRF LD R++
Sbjct: 176 TRFCLICNYVTRIIDPLASRCSKFRFKSLDEGNAGKRIE 214
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 27/143 (18%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +LD++ + ++ + L+ +++ + L G + S ++A
Sbjct: 35 VEKYRPKSLDDVTAQDHTVTVLR--------RTLQSANLPHMLFYGPPGTGKTSTVLALA 86
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------------Y 203
+ K VLELNASD+RGI IVR+++ FA + + S Y
Sbjct: 87 KQLYGPELIKTRVLELNASDERGISIVREKVKNFARMQLSNPPSGPAGEEYRKKYSCPPY 146
Query: 204 KLIILDEADAMTNDAQNALRRKL 226
K+IILDEAD+MT DAQ+ALRR +
Sbjct: 147 KIIILDEADSMTQDAQSALRRTM 169
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD R++ + E V +
Sbjct: 169 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDEGNAGKRIEDIARLEAVTLEDGV 228
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++ S+GD+RK + LQSAA
Sbjct: 229 VETLLRCSEGDLRKAITFLQSAA 251
>gi|388513801|gb|AFK44962.1| unknown [Lotus japonicus]
Length = 231
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 97/149 (65%), Gaps = 8/149 (5%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
++ PH+LFYGPPGTGKTTT LA A +L+ + + VLELNASDDRGI +VR +I
Sbjct: 37 LETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKD 96
Query: 361 FASTKTMHKS--------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
FA+ YK+I+LDEAD+MT DAQNALRR +E ++ RF ICNY+S
Sbjct: 97 FAAVAVGTNPKKGGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 156
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+I + SRC +FRF PL ++ SR+ Y
Sbjct: 157 RIIEPLASRCAKFRFKPLSEEIMSSRILY 185
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 70/136 (51%), Gaps = 20/136 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +++ V++QD + + + L+ + L G + + +A
Sbjct: 12 VEKYRPKQVED-VAYQDEVVRV-------LTNTLETGSCPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS--------SYKLIILDE 210
F K VLELNASDDRGI +VR +I FA+ YK+I+LDE
Sbjct: 64 HQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNPKKGGYPCPPYKIIVLDE 123
Query: 211 ADAMTNDAQNALRRKL 226
AD+MT DAQNALRR +
Sbjct: 124 ADSMTEDAQNALRRTM 139
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ SR+ Y+ +E + + +G
Sbjct: 139 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILYICNEEGI-LDAEG 197
Query: 61 KKAIIDLSDGDM 72
+ +S GD+
Sbjct: 198 LSTLSSISQGDL 209
>gi|424812315|ref|ZP_18237555.1| replication factor C small subunit [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756537|gb|EGQ40120.1| replication factor C small subunit [Candidatus Nanosalinarum sp.
J07AB56]
Length = 317
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 100/144 (69%), Gaps = 2/144 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ F++E ++PHL+F GP GTGKTT+ ++ A+ LY +++ E NASD+RGI
Sbjct: 24 DIVERLQAFVEEGQIPHLMFSGPAGTGKTTSAVSVAKDLYG-SEWRQNFKETNASDERGI 82
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRDQI FA TK ++ + YK+I LDEADA+T DAQ ALRR +E+F+ N RF + CNY
Sbjct: 83 DVVRDQIKSFARTKPVN-AEYKMIFLDEADALTTDAQQALRRTMEQFSDNARFVLSCNYS 141
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLI 435
SKI IQSRC FRF L+ +
Sbjct: 142 SKIIDPIQSRCALFRFNRLEEEQV 165
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 122/284 (42%), Gaps = 76/284 (26%)
Query: 104 EKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP TLDE+V QDI+ ++ + E + L+ + AGT + ++
Sbjct: 9 EKYRPDTLDEVVGQQDIVERLQAFVEEGQIPHLM-------FSGPAGTGKTTSAVSVAKD 61
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ + E NASD+RGI +VRDQI FA TK ++ + YK+I LDEADA+T DAQ A
Sbjct: 62 LYGSEWRQNFKETNASDERGIDVVRDQIKSFARTKPVN-AEYKMIFLDEADALTTDAQQA 120
Query: 222 LRRKLP-----------------------------------------------------V 228
LRR + +
Sbjct: 121 LRRTMEQFSDNARFVLSCNYSSKIIDPIQSRCALFRFNRLEEEQVRRYITRVAEGEGFRI 180
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
+ + + ++ +S GD+R+ N+LQ+ A DE+ ED +Y + EI IL+ LN
Sbjct: 181 SEEAIQGVMRVSGGDLRRTTNVLQTVAL-RKDEIEEDDIYTAAASLRPQEIREILKLALN 239
Query: 289 ESMDLCYKINRFIDENE-LPHLLFYGPPGTGKTTTILACARKLY 331
+ FID E L L+ G I A R+L+
Sbjct: 240 QD---------FIDAREKLSELMI--DRGLDGKDVIDAVHRELF 272
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 36/195 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF L+ + + V E E ++ +
Sbjct: 125 MEQFSDNARFVLSCNYSSKIIDPIQSRCALFRFNRLEEEQVRRYITRVAEGEGFRISEEA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVS---H 117
+ ++ +S GD+R+ N+LQ+ A DE+ ED I+T S RP + E++ +
Sbjct: 185 IQGVMRVSGGDLRRTTNVLQTVAL-RKDEIEEDDIYTAAAS----LRPQEIREILKLALN 239
Query: 118 QDIIST----------------------------IEIPESMLVDLVLKMSDIEYRLAAGT 149
QD I ++IP+ +++V + + ++R+A G
Sbjct: 240 QDFIDAREKLSELMIDRGLDGKDVIDAVHRELFDLDIPDEAKMEMVEFLGEYQFRIAEGG 299
Query: 150 SEKIQLSALIAAFNS 164
S IQ+ A++A+ +
Sbjct: 300 SNDIQIEAMLASIGN 314
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 41/67 (61%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
K+ E+ I++GL D++ + + L+IP+ +++V + + ++R+A G S IQ+ A
Sbjct: 248 KLSELMIDRGLDGKDVIDAVHRELFDLDIPDEAKMEMVEFLGEYQFRIAEGGSNDIQIEA 307
Query: 515 LIAAFNS 521
++A+ +
Sbjct: 308 MLASIGN 314
>gi|389860407|ref|YP_006362646.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
gi|388525310|gb|AFK50508.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
Length = 334
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +F++E +PHLLF GPPGTGKTT A LY + +LELNASD+RGI
Sbjct: 33 EVVARLKKFVEEKNMPHLLFAGPPGTGKTTLAHCLAHDLYGD-NYRQYMLELNASDERGI 91
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ +FA T+ + +K+I+LDEAD MT DAQ ALRR++E +T RF +I NY
Sbjct: 92 DVIRSKVKEFARTRVAGEVPFKIILLDEADNMTADAQQALRRLMELYTATTRFILIANYP 151
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI IQSRC FRF PL ++ RL Y
Sbjct: 152 SKIIEPIQSRCAVFRFTPLSREDVVERLKY 181
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 97/187 (51%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T RF +I NY SKI IQSRC FRF PL ++ RL Y+ E+E V +
Sbjct: 135 MELYTATTRFILIANYPSKIIEPIQSRCAVFRFTPLSREDVVERLKYIAEKENVKYNTEA 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNE------DTIFTLL 99
+ I +LS+GDMRK +NILQ+A+ AH EV + FT
Sbjct: 195 LETIHELSEGDMRKAINILQAASALGEVTVEAVYKVVGLAHPKEVRQMLQLALSGNFTEA 254
Query: 100 VSRVEK----YRPSTLDELVS-HQDIIST-IEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
S++ + Y S LD + H++I S+ I++ + + + +I++RL G ++I
Sbjct: 255 RSKLRELMLNYGLSGLDIIRQIHREIFSSDIKLSDEARIMIADYAGEIQFRLVEGADDEI 314
Query: 154 QLSALIA 160
QL+A +A
Sbjct: 315 QLNAFLA 321
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 111/240 (46%), Gaps = 64/240 (26%)
Query: 104 EKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP TLDE+V+ +++++ ++ + E M + + GT + L
Sbjct: 18 EKYRPRTLDEVVNQKEVVARLKKFVEEK-------NMPHLLFAGPPGTGKTTLAHCLAHD 70
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ +LELNASD+RGI ++R ++ +FA T+ + +K+I+LDEAD MT DAQ A
Sbjct: 71 LYGDNYRQYMLELNASDERGIDVIRSKVKEFARTRVAGEVPFKIILLDEADNMTADAQQA 130
Query: 222 LRRKL---------------------PV---------TPDGKKAII-------------- 237
LRR + P+ TP ++ ++
Sbjct: 131 LRRLMELYTATTRFILIANYPSKIIEPIQSRCAVFRFTPLSREDVVERLKYIAEKENVKY 190
Query: 238 ---------DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
+LS+GDMRK +NILQ+A+ EV + VY VG E+ +L+ L+
Sbjct: 191 NTEALETIHELSEGDMRKAINILQAASA--LGEVTVEAVYKVVGLAHPKEVRQMLQLALS 248
>gi|297845144|ref|XP_002890453.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
gi|297336295|gb|EFH66712.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 99/143 (69%), Gaps = 8/143 (5%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+ PH+LFYGPPGTGKTTT LA A +L+ + + VLELNASDDRGI +VR +I FA+
Sbjct: 41 DCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAV 100
Query: 365 K--TMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
+ H+ S +K+IILDEAD+MT DAQNALRR +E ++ RF ICNY+S+I
Sbjct: 101 AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 160
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
+ SRC +FRF PL ++ +R+
Sbjct: 161 PLASRCAKFRFKPLSEEVMSNRI 183
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 20/136 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + ++ ++++ ++ L+ +D + L G + + +A
Sbjct: 12 VEKYRPKQVKDVAHQEEVVR--------VLTNTLQTADCPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK--TMHKSS------YKLIILDE 210
F K VLELNASDDRGI +VR +I FA+ + H+ S +K+IILDE
Sbjct: 64 HQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDE 123
Query: 211 ADAMTNDAQNALRRKL 226
AD+MT DAQNALRR +
Sbjct: 124 ADSMTEDAQNALRRTM 139
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ +R+ ++ +E +++ +
Sbjct: 139 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLGGEA 198
Query: 61 KKAIIDLSDGDMRKVLNILQSA 82
+ +S GD+R+ + LQSA
Sbjct: 199 LSTLSSISQGDLRRAITYLQSA 220
>gi|260800650|ref|XP_002595211.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae]
gi|229280455|gb|EEN51223.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae]
Length = 364
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 97/144 (67%), Gaps = 7/144 (4%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LP+LL YGPPGTGKT+TILA AR+L+ VLELNASD+RGI +VRD++ F+
Sbjct: 69 DLPNLLLYGPPGTGKTSTILAAARELFGADLMKQRVLELNASDERGIQVVRDKVKTFSQL 128
Query: 365 KTMHK-------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
+K++ILDEAD+MTN AQ +LRR +EK T RFC+ICNY+S+I
Sbjct: 129 SASGTRPDGRPCPPFKIVILDEADSMTNPAQASLRRTMEKETKTTRFCLICNYISRIIEP 188
Query: 418 IQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC +FRF PL S ++ RL +
Sbjct: 189 LASRCAKFRFKPLSSDILQKRLRH 212
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 54/82 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK T RFC+ICNY+S+I + SRC +FRF PL S ++ RL ++ E EKVN
Sbjct: 166 MEKETKTTRFCLICNYISRIIEPLASRCAKFRFKPLSSDILQKRLRHIAEAEKVNAEDKA 225
Query: 61 KKAIIDLSDGDMRKVLNILQSA 82
A+ID S+GD+RK + LQSA
Sbjct: 226 ITALIDTSEGDLRKAITYLQSA 247
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 19/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T+D++ +++++ ++ L+ +D+ L G + S ++AA
Sbjct: 40 VEKYRPRTVDDVAFQEEVVAVLK--------KSLQGADLPNLLLYGPPGTGKTSTILAAA 91
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK-------SSYKLIILDEA 211
F + K VLELNASD+RGI +VRD++ F+ +K++ILDEA
Sbjct: 92 RELFGADLMKQRVLELNASDERGIQVVRDKVKTFSQLSASGTRPDGRPCPPFKIVILDEA 151
Query: 212 DAMTNDAQNALRRKL 226
D+MTN AQ +LRR +
Sbjct: 152 DSMTNPAQASLRRTM 166
>gi|30687479|ref|NP_849695.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192019|gb|AEE30140.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 327
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 99/145 (68%), Gaps = 8/145 (5%)
Query: 303 ENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362
E PH+LFYGPPGTGKTTT LA A +L+ + + VLELNASDDRGI +VR +I FA
Sbjct: 27 EEVCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFA 86
Query: 363 STK--TMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
+ + H+ S +K+IILDEAD+MT DAQNALRR +E ++ RF ICNY+S+I
Sbjct: 87 AVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI 146
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRL 439
+ SRC +FRF PL ++ +R+
Sbjct: 147 IEPLASRCAKFRFKPLSEEVMSNRI 171
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 71/133 (53%), Gaps = 26/133 (19%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + + V+HQ+ E+ ML + GT + A+
Sbjct: 12 VEKYRPKQVKD-VAHQE-----EVCPHML-----------FYGPPGTGKTTTALAIAHQL 54
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK--TMHKSS------YKLIILDEADA 213
F K VLELNASDDRGI +VR +I FA+ + H+ S +K+IILDEAD+
Sbjct: 55 FGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADS 114
Query: 214 MTNDAQNALRRKL 226
MT DAQNALRR +
Sbjct: 115 MTEDAQNALRRTM 127
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ +R+ ++ +E +++ +
Sbjct: 127 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSA 82
+ +S GD+R+ + LQSA
Sbjct: 187 LSTLSSISQGDLRRAITYLQSA 208
>gi|255731300|ref|XP_002550574.1| activator 1 41 kDa subunit [Candida tropicalis MYA-3404]
gi|240131583|gb|EER31142.1| activator 1 41 kDa subunit [Candida tropicalis MYA-3404]
Length = 354
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/151 (50%), Positives = 101/151 (66%), Gaps = 10/151 (6%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
I LPH+LFYGPPGTGKT+TILA A+ LY + + VLELNASD+RGI IVR++I
Sbjct: 49 ITSGNLPHMLFYGPPGTGKTSTILALAKTLYGPNLYKSRVLELNASDERGISIVREKIKN 108
Query: 361 FASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
FA + S YK+IILDEAD+MTNDAQ+ALRR +E + RF +ICNY
Sbjct: 109 FARLTISNPSKEDLEKYPCPPYKIIILDEADSMTNDAQSALRRTMETYAGITRFVLICNY 168
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+++I + SRC++FRF L++ + RL +
Sbjct: 169 ITRIIDPLTSRCSKFRFKLLNNENALLRLRF 199
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +L ++ S + + ++ + ++ + L G + S ++A
Sbjct: 24 VEKYRPKSLSDISSQEHTVK--------VLTQTITSGNLPHMLFYGPPGTGKTSTILALA 75
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR++I FA + S YK+IIL
Sbjct: 76 KTLYGPNLYKSRVLELNASDERGISIVREKIKNFARLTISNPSKEDLEKYPCPPYKIIIL 135
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MTNDAQ+ALRR +
Sbjct: 136 DEADSMTNDAQSALRRTM 153
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF +ICNY+++I + SRC++FRF L++ + RL ++ +E + T D
Sbjct: 153 METYAGITRFVLICNYITRIIDPLTSRCSKFRFKLLNNENALLRLRFIANEENLRYTGDD 212
Query: 61 K-KAIIDLSDGDMRKVLNILQSAA 83
++ +S GD+RK + LQSAA
Sbjct: 213 VLNEVLKISAGDLRKGITYLQSAA 236
>gi|5263320|gb|AAD41422.1|AC007727_11 Similar to gb|M87339 replication factor C, 37-kDa subunit from Homo
sapiens and is a member of PF|00004 ATPases associated
with various cellular activities [Arabidopsis thaliana]
Length = 319
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 99/143 (69%), Gaps = 8/143 (5%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+ PH+LFYGPPGTGKTTT LA A +L+ + + VLELNASDDRGI +VR +I FA+
Sbjct: 41 DCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAV 100
Query: 365 K--TMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
+ H+ S +K+IILDEAD+MT DAQNALRR +E ++ RF ICNY+S+I
Sbjct: 101 AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 160
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
+ SRC +FRF PL ++ +R+
Sbjct: 161 PLASRCAKFRFKPLSEEVMSNRI 183
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 20/136 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + ++ ++++ ++ L+ +D + L G + + +A
Sbjct: 12 VEKYRPKQVKDVAHQEEVVR--------VLTNTLQTADCPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK--TMHKSS------YKLIILDE 210
F K VLELNASDDRGI +VR +I FA+ + H+ S +K+IILDE
Sbjct: 64 HQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDE 123
Query: 211 ADAMTNDAQNALRRKL 226
AD+MT DAQNALRR +
Sbjct: 124 ADSMTEDAQNALRRTM 139
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 48/80 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ +R+ ++ +E +++ +
Sbjct: 139 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEA 198
Query: 61 KKAIIDLSDGDMRKVLNILQ 80
+ +S GD+R+ + LQ
Sbjct: 199 LSTLSSISQGDLRRAITYLQ 218
>gi|18395021|ref|NP_564148.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|15810343|gb|AAL07059.1| putative replication factor [Arabidopsis thaliana]
gi|17065122|gb|AAL32715.1| Similar replication factor C, 37-kDa subunit [Arabidopsis thaliana]
gi|21536935|gb|AAM61276.1| putative replication factor [Arabidopsis thaliana]
gi|34098857|gb|AAQ56811.1| At1g21690 [Arabidopsis thaliana]
gi|332192018|gb|AEE30139.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 339
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 99/143 (69%), Gaps = 8/143 (5%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+ PH+LFYGPPGTGKTTT LA A +L+ + + VLELNASDDRGI +VR +I FA+
Sbjct: 41 DCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAV 100
Query: 365 K--TMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
+ H+ S +K+IILDEAD+MT DAQNALRR +E ++ RF ICNY+S+I
Sbjct: 101 AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 160
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
+ SRC +FRF PL ++ +R+
Sbjct: 161 PLASRCAKFRFKPLSEEVMSNRI 183
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 20/136 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + ++ ++++ ++ L+ +D + L G + + +A
Sbjct: 12 VEKYRPKQVKDVAHQEEVVR--------VLTNTLQTADCPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK--TMHKSS------YKLIILDE 210
F K VLELNASDDRGI +VR +I FA+ + H+ S +K+IILDE
Sbjct: 64 HQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDE 123
Query: 211 ADAMTNDAQNALRRKL 226
AD+MT DAQNALRR +
Sbjct: 124 ADSMTEDAQNALRRTM 139
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ +R+ ++ +E +++ +
Sbjct: 139 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEA 198
Query: 61 KKAIIDLSDGDMRKVLNILQSA 82
+ +S GD+R+ + LQSA
Sbjct: 199 LSTLSSISQGDLRRAITYLQSA 220
>gi|15920690|ref|NP_376359.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
gi|42559516|sp|Q975D3.1|RFCS_SULTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|342306208|dbj|BAK54297.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
Length = 327
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ RF+ + +PHLLF GPPGTGKTT LA LY + LELNASD+RGI
Sbjct: 26 DIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYGD-NYRQYFLELNASDERGI 84
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R+++ +FA T +K+++LDEAD MT DAQ ALRR +E +T RF + CNYL
Sbjct: 85 DVIRNKVKEFARTVAGGNVPFKVVLLDEADNMTADAQQALRRTMELYTETTRFILACNYL 144
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI IQSR FRF PL +++RL Y
Sbjct: 145 SKIIEPIQSRTALFRFYPLKKEDVVARLAY 174
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 96/187 (51%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T RF + CNYLSKI IQSR FRF PL +++RL Y+ + EKV
Sbjct: 128 MELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNEKVEYDQKA 187
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNEDTIFTL---LVSR 102
+ I D++ GDMRK +NILQ+++ A E+ E + L +
Sbjct: 188 LETIYDITQGDMRKAINILQASSVYGKVTVEAVYKVLGLAQPKEIREMIMLALQGNFLKA 247
Query: 103 VEKYRPSTLDELVSHQDIISTIE---------IPESMLVDLVLKMSDIEYRLAAGTSEKI 153
EK R ++ +S +DII I IP+ + V LV + ++EYR+ G ++I
Sbjct: 248 REKLRELLVNYGLSGEDIIKQIHREVTGNEINIPDDLKVLLVDYIGEVEYRIMEGADDEI 307
Query: 154 QLSALIA 160
QL+AL+A
Sbjct: 308 QLNALLA 314
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 103/233 (44%), Gaps = 60/233 (25%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP +LD++V+ +DI+ ++ + D M + + GT + AL+
Sbjct: 11 EKYRPRSLDDIVNQKDIVERLK---RFVKDK--NMPHLLFSGPPGTGKTTAALALVHDLY 65
Query: 164 SARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALR 223
+ LELNASD+RGI ++R+++ +FA T +K+++LDEAD MT DAQ ALR
Sbjct: 66 GDNYRQYFLELNASDERGIDVIRNKVKEFARTVAGGNVPFKVVLLDEADNMTADAQQALR 125
Query: 224 RKLPVTPDGKKAII---------------------------------------------- 237
R + + + + I+
Sbjct: 126 RTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNEKVEYDQ 185
Query: 238 -------DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
D++ GDMRK +NILQ A++ +V + VY +G EI ++
Sbjct: 186 KALETIYDITQGDMRKAINILQ--ASSVYGKVTVEAVYKVLGLAQPKEIREMI 236
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 455 KIQEIKIEKGLALTDILTEISLLV--HRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
K++E+ + GL+ DI+ +I V + + IP+ + V LV + ++EYR+ G ++IQL
Sbjct: 250 KLRELLVNYGLSGEDIIKQIHREVTGNEINIPDDLKVLLVDYIGEVEYRIMEGADDEIQL 309
Query: 513 SALIA 517
+AL+A
Sbjct: 310 NALLA 314
>gi|332021958|gb|EGI62288.1| Replication factor C subunit 4 [Acromyrmex echinatior]
Length = 356
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 111/173 (64%), Gaps = 22/173 (12%)
Query: 276 KTEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ 335
+TE+ N++R + ++ + P++LFYGPPGTGKT+ I A AR+++ +
Sbjct: 50 QTEVVNVIR--------------QAMEHGDFPNMLFYGPPGTGKTSIIHAAARQMFG-SM 94
Query: 336 FNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQ 388
+ +LELNASDDRGI +VR++I FA + +K+IILDEAD+MT AQ
Sbjct: 95 YKDRILELNASDDRGIQVVREKIKSFALRRANPNGPDGKKCPPFKIIILDEADSMTGAAQ 154
Query: 389 NALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ALRRI+EK + + RFC++CNYLS+I I SRCT+FRF PL ++RL+Y
Sbjct: 155 TALRRIMEKESHSTRFCLVCNYLSRIIKPIASRCTKFRFKPLSDEKSIARLEY 207
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 52/81 (64%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + + RFC++CNYLS+I I SRCT+FRF PL ++RL+Y+ +E +
Sbjct: 161 MEKESHSTRFCLVCNYLSRIIKPIASRCTKFRFKPLSDEKSIARLEYICNEENLKADKSV 220
Query: 61 KKAIIDLSDGDMRKVLNILQS 81
+ I++ S GD+R+ + LQS
Sbjct: 221 LEKIVEASGGDLRQAVMCLQS 241
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 79/157 (50%), Gaps = 25/157 (15%)
Query: 79 LQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKM 138
++ +T+ A + +D L VEKYRP ++++V ++++ I ++
Sbjct: 17 VKKPSTSQAKDNKKD-----LTPWVEKYRPKNVNDIVEQTEVVNVIR--------QAMEH 63
Query: 139 SDIEYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS 194
D L G + S + AA F S K +LELNASDDRGI +VR++I FA
Sbjct: 64 GDFPNMLFYGPPGTGKTSIIHAAARQMFGSMY-KDRILELNASDDRGIQVVREKIKSFAL 122
Query: 195 TKTMHKS-------SYKLIILDEADAMTNDAQNALRR 224
+ +K+IILDEAD+MT AQ ALRR
Sbjct: 123 RRANPNGPDGKKCPPFKIIILDEADSMTGAAQTALRR 159
>gi|356515925|ref|XP_003526647.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Glycine
max]
Length = 330
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 110/182 (60%), Gaps = 26/182 (14%)
Query: 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK- 365
PH+LFYGPPGTGKTTT LA A +L+ + + VLELNASDDRGI +VR +I FA+
Sbjct: 31 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAV 90
Query: 366 --TMHKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418
K+ Y K+I+LDEAD+MT DAQNALRR +E ++ RF ICNY+S+I +
Sbjct: 91 GTNQCKNGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPL 150
Query: 419 QSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLAL-TDILTEISLL 477
SRC +FRF PL ++ SR+ Y I E+GL L + L+ +S +
Sbjct: 151 ASRCAKFRFKPLSEEIMSSRILY-----------------ISQEEGLCLDAEALSTLSFI 193
Query: 478 VH 479
H
Sbjct: 194 SH 195
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 69/133 (51%), Gaps = 26/133 (19%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + + V+HQD E+ ML + GT + A+
Sbjct: 12 VEKYRPKQVKD-VAHQD-----EVCPHML-----------FYGPPGTGKTTTALAIAHQL 54
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK---TMHKSSY-----KLIILDEADA 213
F K VLELNASDDRGI +VR +I FA+ K+ Y K+I+LDEAD+
Sbjct: 55 FGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIVLDEADS 114
Query: 214 MTNDAQNALRRKL 226
MT DAQNALRR +
Sbjct: 115 MTEDAQNALRRTM 127
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 57/98 (58%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ SR+ Y+ ++E + + +
Sbjct: 127 METYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQEEGLCLDAEA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
+ +S GD+R+ + LQSAA ++ + + ++
Sbjct: 187 LSTLSFISHGDLRRAITYLQSAARLFGSSISSENLISV 224
>gi|145350673|ref|XP_001419724.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579956|gb|ABO98017.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 342
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 97/144 (67%), Gaps = 6/144 (4%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS 363
+PH LFYGPPGTGKTTT LA A++LY + V ELNASD+RGI +VR++I FAS
Sbjct: 47 GNMPHCLFYGPPGTGKTTTALAIAKELYGPELYKQRVKELNASDERGISVVRNKIKTFAS 106
Query: 364 TKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
+ YK++ILDEADAMT DAQ+ALRR++E ++ RF ++CNY++KI
Sbjct: 107 QAVGAPAPGYPSPPYKILILDEADAMTGDAQSALRRMMETYSKVTRFFLLCNYVTKIIDP 166
Query: 418 IQSRCTRFRFGPLDSSLIMSRLDY 441
I SRC +FRF PL + +RL +
Sbjct: 167 IASRCAKFRFSPLAQETMGARLKF 190
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 94/186 (50%), Gaps = 26/186 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ++CNY++KI I SRC +FRF PL + +RL ++ EQE + ++ D
Sbjct: 144 METYSKVTRFFLLCNYVTKIIDPIASRCAKFRFSPLAQETMGARLKFIGEQEGLEMSDDV 203
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLV----SRVEKY----RPSTLD 112
S GDMRK + +LQSAA A +++ +I + +++K R +
Sbjct: 204 FAMCSKHSGGDMRKAITLLQSAARLFAGKISGASIVEVAGHIPDEKIKKMYDLCREGKFE 263
Query: 113 ELVSH-----QDIISTIEI-------------PESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
E +H +D S ++I + + ++ +K+ +++ LA G E +Q
Sbjct: 264 EAQAHMEDILRDGFSGLKILDQYSDYVLEADCSDEVKAEIFIKLGEVDRFLAQGADEGMQ 323
Query: 155 LSALIA 160
L+ L++
Sbjct: 324 LATLVS 329
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 102/234 (43%), Gaps = 71/234 (30%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + ++ S + I+ +E LK ++ + L G + + +A
Sbjct: 19 VEKYRPRVVKDVASQEQIVGVLEN--------ALKTGNMPHCLFYGPPGTGKTTTALAIA 70
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------YKLIILDEAD 212
+ K V ELNASD+RGI +VR++I FAS + YK++ILDEAD
Sbjct: 71 KELYGPELYKQRVKELNASDERGISVVRNKIKTFASQAVGAPAPGYPSPPYKILILDEAD 130
Query: 213 AMTNDAQNALRRKL---------------------------------PVTPD-------- 231
AMT DAQ+ALRR + P+ +
Sbjct: 131 AMTGDAQSALRRMMETYSKVTRFFLLCNYVTKIIDPIASRCAKFRFSPLAQETMGARLKF 190
Query: 232 -GKKAIIDLSD-----------GDMRKVLNILQSAATAHADEVNEDTVYNSVGY 273
G++ +++SD GDMRK + +LQSAA A +++ ++ G+
Sbjct: 191 IGEQEGLEMSDDVFAMCSKHSGGDMRKAITLLQSAARLFAGKISGASIVEVAGH 244
>gi|170030843|ref|XP_001843297.1| replication factor C subunit 4 [Culex quinquefasciatus]
gi|167868416|gb|EDS31799.1| replication factor C subunit 4 [Culex quinquefasciatus]
Length = 355
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/144 (53%), Positives = 101/144 (70%), Gaps = 8/144 (5%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA-- 362
+LP+LL YGPPGTGKT+TILA AR+L+ F +LELNASDDRGI ++R+++ FA
Sbjct: 62 DLPNLLLYGPPGTGKTSTILAAARQLFGD-MFKERILELNASDDRGIAVIRNKVKTFAQL 120
Query: 363 ---STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
T+ K +K++ILDEADAMT+ AQ ALRR +EK T RFC++CNY+S+I
Sbjct: 121 AASGTRPDGKPCPPFKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCNYVSRIIEP 180
Query: 418 IQSRCTRFRFGPLDSSLIMSRLDY 441
I SRCT+FRF PL I+ RL +
Sbjct: 181 ITSRCTKFRFKPLRQEKIIERLRF 204
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 31/185 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK T RFC++CNY+S+I I SRCT+FRF PL I+ RL ++ +QE V V
Sbjct: 158 MEKETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLRQEKIIERLRFICDQETVEVEDQA 217
Query: 61 KKAIIDLSDGDMRKVLNILQS--------AATAHADEVNEDTIFTL-----LVSRVEKYR 107
+ I+D+S GD+R+ + LQS A H+D + + VS +
Sbjct: 218 YQDIVDISGGDLRRAITTLQSCHRLKGKEAKIEHSDILEMSGVVPRKYLEDFVSVCKTSN 277
Query: 108 PSTLDELVSH--QDIISTIEIPESMLVDLVL---------------KMSDIEYRLAAGTS 150
S L++ V D S ++ E L D ++ K+ D +RL G S
Sbjct: 278 YSKLEDYVKGLTHDAYSVGQLFE-QLTDFIIMHEGLTDKQKSTICDKIGDCCFRLQGGGS 336
Query: 151 EKIQL 155
E IQ+
Sbjct: 337 EYIQI 341
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 24/140 (17%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +D++V ++++ + ES L +D+ L G + S ++
Sbjct: 30 VPWVEKYRPKNVDDVVEQGEVVAVLR--ES------LSTADLPNLLLYGPPGTGKTSTIL 81
Query: 160 AAFNSARD------KLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLI 206
AA AR K +LELNASDDRGI ++R+++ FA T+ K +K++
Sbjct: 82 AA---ARQLFGDMFKERILELNASDDRGIAVIRNKVKTFAQLAASGTRPDGKPCPPFKIV 138
Query: 207 ILDEADAMTNDAQNALRRKL 226
ILDEADAMT+ AQ ALRR +
Sbjct: 139 ILDEADAMTHAAQAALRRTM 158
>gi|307205986|gb|EFN84112.1| Replication factor C subunit 4 [Harpegnathos saltator]
Length = 360
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 112/173 (64%), Gaps = 22/173 (12%)
Query: 276 KTEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ 335
+TE+ N++R + ++ + P++LFYGPPGTGKT+ I A AR+++ +
Sbjct: 49 QTEVVNVIR--------------QAMEHGDFPNMLFYGPPGTGKTSIIHAAARQMFG-SI 93
Query: 336 FNAMVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLIILDEADAMTNDAQ 388
+ +LELNASDDRGI +VRD+I FA T+ K +K+IILDEAD+MT AQ
Sbjct: 94 YRDRILELNASDDRGIQVVRDKIKSFALRRANPTRPDGKKCPPFKIIILDEADSMTGAAQ 153
Query: 389 NALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ALRRI+EK + RFC++CNYLS+I I SRCT+FRF PL ++RL+Y
Sbjct: 154 TALRRIMEKEAHSTRFCLVCNYLSRIIKPITSRCTKFRFKPLSDEKSIARLEY 206
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 84/158 (53%), Gaps = 27/158 (17%)
Query: 79 LQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKM 138
++ +T+ + E +D L VEKYRP ++D++V ++++ I ++
Sbjct: 16 VKKPSTSRSKEDKKD-----LTPWVEKYRPKSVDDIVEQTEVVNVIR--------QAMEH 62
Query: 139 SDIEYRLAAGTSEKIQLSALIAA----FNS-ARDKLEVLELNASDDRGIGIVRDQIFQFA 193
D L G + S + AA F S RD+ +LELNASDDRGI +VRD+I FA
Sbjct: 63 GDFPNMLFYGPPGTGKTSIIHAAARQMFGSIYRDR--ILELNASDDRGIQVVRDKIKSFA 120
Query: 194 -----STKTMHKSS--YKLIILDEADAMTNDAQNALRR 224
T+ K +K+IILDEAD+MT AQ ALRR
Sbjct: 121 LRRANPTRPDGKKCPPFKIIILDEADSMTGAAQTALRR 158
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC++CNYLS+I I SRCT+FRF PL ++RL+Y+ +E + +
Sbjct: 160 MEKEAHSTRFCLVCNYLSRIIKPITSRCTKFRFKPLSDEKSIARLEYICNEENLMANRNV 219
Query: 61 KKAIIDLSDGDMRKVLNILQS 81
+ I+ S GD+R+ + LQS
Sbjct: 220 LEKIVAASGGDLRQAVMCLQS 240
>gi|213403013|ref|XP_002172279.1| replication factor C subunit 2 [Schizosaccharomyces japonicus
yFS275]
gi|212000326|gb|EEB05986.1| replication factor C subunit 2 [Schizosaccharomyces japonicus
yFS275]
Length = 340
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/144 (49%), Positives = 99/144 (68%), Gaps = 6/144 (4%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS 363
N LPH+LFYG PGTGKT+TILA AR+L+ + VLELNASD+RGI I+R+++ FA
Sbjct: 51 NNLPHMLFYGSPGTGKTSTILALARELFGPQLVKSRVLELNASDERGISIIREKVKNFAR 110
Query: 364 TKTMHK------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
+ +K++ILDEAD+MT DAQ ALRR +E RFC++CNY+++I
Sbjct: 111 IAVNNTVNGYPCPPFKIVILDEADSMTQDAQAALRRTMEATARITRFCLVCNYVTRIIDP 170
Query: 418 IQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC+++RF PLD+ I RL++
Sbjct: 171 LASRCSKYRFKPLDAQDIAKRLEF 194
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 28/183 (15%)
Query: 9 RFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLS 68
RFC++CNY+++I + SRC+++RF PLD+ I RL+++ + V + P A++ +S
Sbjct: 156 RFCLVCNYVTRIIDPLASRCSKYRFKPLDAQDIAKRLEFIAADQTVALEPGVIDALVSVS 215
Query: 69 DGDMRKVLNILQSAATAH-------------ADEVNEDTIFTLL-------VSRVEKYRP 108
GDMRK + LQSAAT H + + +D I LL +S++E
Sbjct: 216 GGDMRKAITFLQSAATLHQGTPVTVNTVIEISGRIPDDVIQELLDVSKSKDISKIESVAE 275
Query: 109 STLDELVS--------HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+ S H +++ IP + ++LKMS+++ L G E +QL ++
Sbjct: 276 TVTANGFSTGLLLSQLHDKVMADESIPSNSKHKILLKMSEVDKCLTDGADEYLQLLDMLV 335
Query: 161 AFN 163
A +
Sbjct: 336 AIS 338
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 98/222 (44%), Gaps = 71/222 (31%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VE YRP +LDE VS QD+ TI++ + ++ +++ + L G+ + S ++
Sbjct: 20 VPWVEHYRPKSLDE-VSSQDM--TIQVLKKTMMS-----NNLPHMLFYGSPGTGKTSTIL 71
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK------SSYKLIILD 209
A F K VLELNASD+RGI I+R+++ FA + +K++ILD
Sbjct: 72 ALARELFGPQLVKSRVLELNASDERGISIIREKVKNFARIAVNNTVNGYPCPPFKIVILD 131
Query: 210 EADAMTNDAQNALRRKLPVT---------------------------------------- 229
EAD+MT DAQ ALRR + T
Sbjct: 132 EADSMTQDAQAALRRTMEATARITRFCLVCNYVTRIIDPLASRCSKYRFKPLDAQDIAKR 191
Query: 230 -------------PDGKKAIIDLSDGDMRKVLNILQSAATAH 258
P A++ +S GDMRK + LQSAAT H
Sbjct: 192 LEFIAADQTVALEPGVIDALVSVSGGDMRKAITFLQSAATLH 233
>gi|224084964|ref|XP_002307456.1| predicted protein [Populus trichocarpa]
gi|222856905|gb|EEE94452.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/141 (52%), Positives = 94/141 (66%), Gaps = 8/141 (5%)
Query: 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKT 366
PH+LFYGPPGTGKTTT LA A +LY + + VLELNASDDRGI +VR +I FA+
Sbjct: 43 PHMLFYGPPGTGKTTTALAIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAV 102
Query: 367 MHKS--------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418
YK+IILDEAD+MT DAQNALRR +E ++ RF ICNY+S+I +
Sbjct: 103 GSGQRQGVYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 162
Query: 419 QSRCTRFRFGPLDSSLIMSRL 439
SRC +FRF PL ++ +R+
Sbjct: 163 ASRCAKFRFKPLPEEIMSNRI 183
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 71/136 (52%), Gaps = 20/136 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + + V+HQD + + + L+ ++ + L G + + +A
Sbjct: 12 VEKYRPKQIKD-VAHQDEVVRV-------LTNTLETANCPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS--------SYKLIILDE 210
+ K VLELNASDDRGI +VR +I FA+ YK+IILDE
Sbjct: 64 HQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRQGVYPCPPYKIIILDE 123
Query: 211 ADAMTNDAQNALRRKL 226
AD+MT DAQNALRR +
Sbjct: 124 ADSMTEDAQNALRRTM 139
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ +R+ ++ +E + + +
Sbjct: 139 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLPEEIMSNRILHICNEEGLTLDTEA 198
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ +S GD+R+ + LQ AA
Sbjct: 199 LSTLSSVSQGDLRRAITYLQGAA 221
>gi|126466118|ref|YP_001041227.1| replication factor C small subunit [Staphylothermus marinus F1]
gi|158513390|sp|A3DNV9.1|RFCS_STAMF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126014941|gb|ABN70319.1| replication factor C small subunit [Staphylothermus marinus F1]
Length = 329
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 138/242 (57%), Gaps = 23/242 (9%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +F+ E +PHLLF GPPGTGKTT A L+ + + +LELNASD+RGI
Sbjct: 30 EIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFGE-NYRQYMLELNASDERGI 88
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ +FA T+ +K+++LDEAD MT DAQ ALRR++E +T RF +I NY
Sbjct: 89 DVIRSKVKEFARTRVAANIPFKIVLLDEADNMTADAQQALRRLMEMYTATTRFILIANYP 148
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEK-------G 464
SKI IQSRC FRF PL ++SRL W + ++++I++
Sbjct: 149 SKIIEPIQSRCAVFRFAPLKKEDVISRLK-----------WIAEQEKVEIDEEALEAIHD 197
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
L+ D+ I++L + + + VD V K+ + + + IQL AL FN AR+
Sbjct: 198 LSEGDMRRAINILQAAAALGK-VTVDSVYKVVGLAH--PREIRQMIQL-ALAGNFNDARE 253
Query: 525 KL 526
KL
Sbjct: 254 KL 255
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 99/187 (52%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T RF +I NY SKI IQSRC FRF PL ++SRL ++ EQEKV + +
Sbjct: 132 MEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKVEIDEEA 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNEDTIFTL---LVSR 102
+AI DLS+GDMR+ +NILQ+AA AH E+ + L
Sbjct: 192 LEAIHDLSEGDMRRAINILQAAAALGKVTVDSVYKVVGLAHPREIRQMIQLALAGNFNDA 251
Query: 103 VEKYRPSTLDELVS--------HQDIIST-IEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
EK R ++ +S H++I ST I+IP+ + + +I++RL G ++I
Sbjct: 252 REKLRELMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAGEIQFRLVEGADDEI 311
Query: 154 QLSALIA 160
QL+A +A
Sbjct: 312 QLNAFLA 318
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 109/240 (45%), Gaps = 66/240 (27%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG---TSEKIQLSALIA 160
EKYRP TLDE+V ++I+S ++ +K ++ + L AG T + L
Sbjct: 15 EKYRPKTLDEIVDQEEIVSRLK--------QFVKERNMPHLLFAGPPGTGKTTAAHCLAH 66
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ +LELNASD+RGI ++R ++ +FA T+ +K+++LDEAD MT DAQ
Sbjct: 67 DLFGENYRQYMLELNASDERGIDVIRSKVKEFARTRVAANIPFKIVLLDEADNMTADAQQ 126
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR K+
Sbjct: 127 ALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKVE 186
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+ + +AI DLS+GDMR+ +NILQ+AA +V D+VY VG EI +++ L
Sbjct: 187 IDEEALEAIHDLSEGDMRRAINILQAAAA--LGKVTVDSVYKVVGLAHPREIRQMIQLAL 244
>gi|323308474|gb|EGA61719.1| Rfc2p [Saccharomyces cerevisiae FostersO]
Length = 353
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/147 (51%), Positives = 103/147 (70%), Gaps = 12/147 (8%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPH+LFYGPPGTGKT+TILA ++LY + +LELNASD+RGI IVR+++ FA
Sbjct: 58 LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKIFARL- 116
Query: 366 TMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
T+ K S YK+IILDEAD+MT DAQ+ALRR +E ++ RFC+ICNY+++I
Sbjct: 117 TVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF LD+S + RL +
Sbjct: 177 IDPLASRCSKFRFKALDASNAIDRLRF 203
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 13/127 (10%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD+S + RL ++ EQE V
Sbjct: 157 METYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGV 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAA-------------TAHADEVNEDTIFTLLVSRVEKYR 107
+ I+D+S GD+R+ + +LQSA+ + +E+ +L+ VEK +
Sbjct: 217 LEXILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVK 276
Query: 108 PSTLDEL 114
DE+
Sbjct: 277 SGDFDEI 283
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 24/139 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LDE+ + ++ ++ LK +++ + L G + S ++A
Sbjct: 28 VEKYRPKNLDEVTAQDHAVTVLK--------KTLKSANLPHMLFYGPPGTGKTSTILALT 79
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----------YKLII 207
+ K +LELNASD+RGI IVR+++ FA T+ K S YK+II
Sbjct: 80 KELYGPDLMKSRILELNASDERGISIVREKVKIFARL-TVSKPSKHDLENYPCPPYKIII 138
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEAD+MT DAQ+ALRR +
Sbjct: 139 LDEADSMTADAQSALRRTM 157
>gi|21227923|ref|NP_633845.1| replication factor C small subunit [Methanosarcina mazei Go1]
gi|42559488|sp|Q8PVY4.1|RFCS_METMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|20906344|gb|AAM31517.1| replication factor C subunit [Methanosarcina mazei Go1]
Length = 338
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 97/142 (68%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
++ LPHLLF GPPG GKT + ++ AR+++ + + ELNASD+RGI IVR++I
Sbjct: 40 YVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDLWRENFTELNASDERGIDIVRNKIK 99
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
FA T M + +K+I LDEADA+T+DAQ+ALRR +EKF++N RF + CNY SKI IQ
Sbjct: 100 NFAKTAPMGGAPFKIIFLDEADALTSDAQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQ 159
Query: 420 SRCTRFRFGPLDSSLIMSRLDY 441
SRC +RF L I RL+Y
Sbjct: 160 SRCAVYRFRRLSDKAIRERLEY 181
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 112/205 (54%), Gaps = 38/205 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EKF++N RF + CNY SKI IQSRC +RF L I RL+Y+ +++ +++T G
Sbjct: 135 MEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQDLSITDGG 194
Query: 61 KKAIIDLSDGDMRKVLNILQSA------------------ATAHADEVNEDTIFTLLVS- 101
+A+I ++ GDMRK +N LQ+A ATA+ +E+ ++ I T L
Sbjct: 195 YEALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEI-KNLIETALRGN 253
Query: 102 -RVEKYRPSTL--DELVSHQDIISTI-----EIPESMLVDLVLKMSDI----------EY 143
RV + + L +E +S +DI+ I E+ M++DL L DI ++
Sbjct: 254 FRVARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMILDLGLSERDIVGLVDIIGETDF 313
Query: 144 RLAAGTSEKIQLSALIAAFNSARDK 168
RL G SEKIQL AL+A F +R++
Sbjct: 314 RLTEGASEKIQLEALLAHFALSREE 338
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 121/265 (45%), Gaps = 71/265 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG------TSEKIQLS 156
+EKYRP L+++ ++ I E ++ + K ++ + L +G T+ + ++
Sbjct: 16 IEKYRPVRLNQVAGQEETI------ERLMSYVATK--NLPHLLFSGPPGVGKTASAVSIA 67
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
I + R+ ELNASD+RGI IVR++I FA T M + +K+I LDEADA+T+
Sbjct: 68 REIFGEDLWRENF--TELNASDERGIDIVRNKIKNFAKTAPMGGAPFKIIFLDEADALTS 125
Query: 217 DAQNALRRKL-------------------------------------------------- 226
DAQ+ALRR +
Sbjct: 126 DAQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKE 185
Query: 227 ---PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADE-VNEDTVYNSVGYPTKTEITNI 282
+T G +A+I ++ GDMRK +N LQ+AA ++ ++ +T+Y + EI N+
Sbjct: 186 QDLSITDGGYEALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEIKNL 245
Query: 283 LRWLLNESMDLCYK-INRFIDENEL 306
+ L + + K +NR + E L
Sbjct: 246 IETALRGNFRVARKELNRLLYEEGL 270
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 8/72 (11%)
Query: 462 EKGLALTDILTEI--------SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 513
E+GL+ DI+ +I +L++ L + E +V LV + + ++RL G SEKIQL
Sbjct: 267 EEGLSGEDIVGQIYRVVSEMDNLMILDLGLSERDIVGLVDIIGETDFRLTEGASEKIQLE 326
Query: 514 ALIAAFNSARDK 525
AL+A F +R++
Sbjct: 327 ALLAHFALSREE 338
>gi|119618522|gb|EAW98116.1| hCG1812172, isoform CRA_b [Homo sapiens]
Length = 153
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 94/130 (72%), Gaps = 11/130 (8%)
Query: 274 PTKTEITNILRWL-------LNE---SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P T+I N L W+ LN+ D+ I +FI+E+ LPHLL YGPPGTGKT+TI
Sbjct: 12 PAATKIRN-LPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTI 70
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
LACA++LY +F +MVLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAM
Sbjct: 71 LACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAM 130
Query: 384 TNDAQNALRR 393
T DAQNALRR
Sbjct: 131 TQDAQNALRR 140
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 81/127 (63%), Gaps = 14/127 (11%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPP-----GTGKTSTI----LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALRR 224
AQNALRR
Sbjct: 134 AQNALRR 140
>gi|255558610|ref|XP_002520330.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540549|gb|EEF42116.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 342
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 97/147 (65%), Gaps = 8/147 (5%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
++ + PH+LFYGPPGTGKTTT LA A +L+ + + VLELNASDDRGI +VR +I
Sbjct: 37 LETSNCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKN 96
Query: 361 FASTKTMHKS--------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
FA+ YK+IILDEAD+MT DAQNALRR +E ++ RF +CNY+S
Sbjct: 97 FAAVAVGSGQRAGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFLCNYIS 156
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+I + SRC +FRF PL ++ SR+
Sbjct: 157 RIIEPLASRCAKFRFKPLSEEIMSSRV 183
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 70/136 (51%), Gaps = 20/136 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + ++ ++++ ++ L+ S+ + L G + + +A
Sbjct: 12 VEKYRPKQVKDVAHQEEVVR--------VLTNTLETSNCPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS--------SYKLIILDE 210
F K VLELNASDDRGI +VR +I FA+ YK+IILDE
Sbjct: 64 HQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGQRAGGYPCPPYKIIILDE 123
Query: 211 ADAMTNDAQNALRRKL 226
AD+MT DAQNALRR +
Sbjct: 124 ADSMTEDAQNALRRTM 139
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 56/98 (57%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF +CNY+S+I + SRC +FRF PL ++ SR+ ++ +E +N+ +
Sbjct: 139 METYSKVTRFFFLCNYISRIIEPLASRCAKFRFKPLSEEIMSSRVLHICREEGLNLDAEA 198
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
+ +S GD+R+ + LQ AA + ++ + ++
Sbjct: 199 LSTLSYVSQGDLRRAITYLQGAARLYGSTISSKDLISV 236
>gi|190360157|sp|P0C7N7.1|RFC2_PHANO RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2
Length = 411
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 118/196 (60%), Gaps = 37/196 (18%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
++R + + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR
Sbjct: 57 LSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYGPELMKSRVLELNASDERGISIVRQ 116
Query: 357 QIFQFASTKTMHKSSY--------------------------KLIILDEADAMTNDAQNA 390
++ FA + +Y K+I+LDEAD+MT DAQ+A
Sbjct: 117 KVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDKYSCPPFKIIVLDEADSMTQDAQSA 176
Query: 391 LRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNII 450
LRR +E ++ RFC++CNY+++I + SRC++FRF LD + R+ DDI+
Sbjct: 177 LRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVRRV--DDIA----- 229
Query: 451 IWYIKIQEIKIEKGLA 466
K++++K++ G++
Sbjct: 230 ----KLEDVKLDAGVS 241
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 53/83 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF LD + R+D + + E V +
Sbjct: 181 METYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGV 240
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++ ++DGD+RK + LQSAA
Sbjct: 241 SEELVRVADGDLRKAITFLQSAA 263
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 77/154 (50%), Gaps = 38/154 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL E V+ QD +TI+I + L+ S++ + L G + S ++A
Sbjct: 36 VEKYRPKTLSE-VTAQD--NTIQI-----LSRTLQSSNLPHMLFYGPPGTGKTSTILALA 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSY--------------- 203
+ K VLELNASD+RGI IVR ++ FA + +Y
Sbjct: 88 KQLYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMV 147
Query: 204 -----------KLIILDEADAMTNDAQNALRRKL 226
K+I+LDEAD+MT DAQ+ALRR +
Sbjct: 148 RYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTM 181
>gi|432853216|ref|XP_004067597.1| PREDICTED: replication factor C subunit 4-like [Oryzias latipes]
Length = 355
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 104/150 (69%), Gaps = 7/150 (4%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+LY + VLELNASD+RGI +VR+
Sbjct: 55 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVRE 114
Query: 357 QIFQF-----ASTKTMHK--SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ F A T+ K +K+IILDEAD+MT AQ ALRR +EK + RFC+ICN
Sbjct: 115 KVKTFAQLTVAGTRPDGKLCPPFKIIILDEADSMTAPAQAALRRTMEKESRTTRFCLICN 174
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC++FRF PL + + RL
Sbjct: 175 YISRIIEPLTSRCSKFRFKPLANRIQEERL 204
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 58/89 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + + RL + E+E + T +
Sbjct: 160 MEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANRIQEERLLEICEKENLKYTRES 219
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE 89
+A++ +S+GD+RK + LQ AA + D+
Sbjct: 220 IEALVQVSEGDLRKAITFLQCAARLNMDK 248
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 106/243 (43%), Gaps = 74/243 (30%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 31 VPWVEKYRPKCVDEVAFQEEVVAVLK--------KSLEGADLPNLLFYGPPGTGKTSTIL 82
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHK--SSYKLIIL 208
AA + + VLELNASD+RGI +VR+++ FA T+ K +K+IIL
Sbjct: 83 AAARELYGPELYRQRVLELNASDERGIQVVREKVKTFAQLTVAGTRPDGKLCPPFKIIIL 142
Query: 209 DEADAMTNDAQNALRRKL---------------------PVTPDGKK------------- 234
DEAD+MT AQ ALRR + P+T K
Sbjct: 143 DEADSMTAPAQAALRRTMEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLANRIQEE 202
Query: 235 -------------------AIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTVYNSVG-Y 273
A++ +S+GD+RK + LQ AA + D E+ + + G
Sbjct: 203 RLLEICEKENLKYTRESIEALVQVSEGDLRKAITFLQCAARLNMDKEITDRAIVEIAGVV 262
Query: 274 PTK 276
P+K
Sbjct: 263 PSK 265
>gi|448732321|ref|ZP_21714602.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
gi|445804894|gb|EMA55124.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
Length = 325
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 98/139 (70%), Gaps = 2/139 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++ +N+LPHLLF GP G GKTT+ +A AR++Y + LELNASD+RGI
Sbjct: 32 NIVGRLESYVAQNDLPHLLFSGPAGVGKTTSAMAIAREVYGD-DWRENFLELNASDERGI 90
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA T + Y++I LDEADA+T+DAQ+ALRR +E+F N RF + CNY
Sbjct: 91 DVVRDRIKDFART-SFGGYDYRIIFLDEADALTSDAQSALRRTMEQFANNTRFILSCNYS 149
Query: 412 SKIPPAIQSRCTRFRFGPL 430
S+I IQSRC FRFGPL
Sbjct: 150 SQIIDPIQSRCAVFRFGPL 168
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 8/144 (5%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F N RF + CNY S+I IQSRC FRFGPL + + V E+E + VT DG
Sbjct: 133 MEQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAEEAVGEYVRQVAEREGIEVTDDG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
A++ +DGDMRK LN LQ+AAT V+++ ++ + + RP ++ +V
Sbjct: 193 VDALVYAADGDMRKALNGLQAAATTEG-AVDDEAVYGITAT----ARPEEIEAMVERALD 247
Query: 118 QDIISTIEIPESMLVDLVLKMSDI 141
D + + +L D L D+
Sbjct: 248 GDFTAARAKLDDLLTDAGLGGGDV 271
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 106/241 (43%), Gaps = 64/241 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP TL +V H++I+ +E + ++ L L+ AG + A+
Sbjct: 16 IEKYRPETLANVVGHENIVGRLESYVAQNDLPHLLFSGP-------AGVGKTTSAMAIAR 68
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELNASD+RGI +VRD+I FA T + Y++I LDEADA+T+DAQ+
Sbjct: 69 EVYGDDWRENFLELNASDERGIDVVRDRIKDFART-SFGGYDYRIIFLDEADALTSDAQS 127
Query: 221 ALRRKL-----------------------------------------------------P 227
ALRR +
Sbjct: 128 ALRRTMEQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAEEAVGEYVRQVAEREGIE 187
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
VT DG A++ +DGDMRK LN LQ+AAT V+++ VY EI ++ L
Sbjct: 188 VTDDGVDALVYAADGDMRKALNGLQAAATTEG-AVDDEAVYGITATARPEEIEAMVERAL 246
Query: 288 N 288
+
Sbjct: 247 D 247
>gi|334182756|ref|NP_001185061.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192021|gb|AEE30142.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 341
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 99/143 (69%), Gaps = 8/143 (5%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+ PH+LFYGPPGTGKTTT LA A +L+ + + VLELNASDDRGI +VR +I FA+
Sbjct: 41 DCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAV 100
Query: 365 K--TMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
+ H+ S +K+IILDEAD+MT DAQNALRR +E ++ RF ICNY+S+I
Sbjct: 101 AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 160
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
+ SRC +FRF PL ++ +R+
Sbjct: 161 PLASRCAKFRFKPLSEEVMSNRI 183
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 20/136 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + ++ ++++ ++ L+ +D + L G + + +A
Sbjct: 12 VEKYRPKQVKDVAHQEEVVR--------VLTNTLQTADCPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK--TMHKSS------YKLIILDE 210
F K VLELNASDDRGI +VR +I FA+ + H+ S +K+IILDE
Sbjct: 64 HQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDE 123
Query: 211 ADAMTNDAQNALRRKL 226
AD+MT DAQNALRR +
Sbjct: 124 ADSMTEDAQNALRRTM 139
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ +R+ ++ +E +++ +
Sbjct: 139 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEA 198
Query: 61 KKAIIDLSDGDMRKVLNILQSA 82
+ +S GD+R+ + LQSA
Sbjct: 199 LSTLSSISQGDLRRAITYLQSA 220
>gi|383860560|ref|XP_003705757.1| PREDICTED: replication factor C subunit 4-like [Megachile
rotundata]
Length = 357
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 106/152 (69%), Gaps = 8/152 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + ++ P+LLFYGPPGTGKT+TILA AR+L+ + + +LELNASD+RGI +VRD
Sbjct: 56 LRQCLSGSDFPNLLFYGPPGTGKTSTILAAARQLFG-SLYKDRILELNASDERGIQVVRD 114
Query: 357 QIFQFA--STKTMHKSS-----YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+I FA + M +K+IILDEAD+MT AQ ALRR +EK + + RFC+ICN
Sbjct: 115 KIKTFAQLTAGGMRDDGKRCPPFKIIILDEADSMTAAAQAALRRTMEKESHSTRFCLICN 174
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
Y+S+I + SRCT+FRF PL I+ RL+Y
Sbjct: 175 YVSRIIEPLTSRCTKFRFKPLGEEKIIERLEY 206
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 31/195 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + + RFC+ICNY+S+I + SRCT+FRF PL I+ RL+Y+ +E +
Sbjct: 160 MEKESHSTRFCLICNYVSRIIEPLTSRCTKFRFKPLGEEKIIERLEYISNEEGLKAGKPV 219
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD--EVNEDTIFTLL------------------- 99
I++ S GDMR+ + LQS E+ D I ++
Sbjct: 220 LLKIVEASGGDMRRAITCLQSITRLKGKDIEITIDDIVEIIGIVPDKWIDELMEVCKTKD 279
Query: 100 ---------VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+E Y S + E +S + II + E + + ++ + YRL G S
Sbjct: 280 YSKAEAFIDTFMLEAYAASQVIEQLSER-IIYSNEFTDRQKALIADRLGECNYRLLDGGS 338
Query: 151 EKIQLSALIAAFNSA 165
E IQL L A
Sbjct: 339 EYIQLINLCCGIIKA 353
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 70/134 (52%), Gaps = 18/134 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP T++++V +++ + L SD L G + S ++AA
Sbjct: 35 VEKYRPKTVEDVVEQAEVVEVLR--------QCLSGSDFPNLLFYGPPGTGKTSTILAAA 86
Query: 163 NSARDKL---EVLELNASDDRGIGIVRDQIFQFA--STKTMHKSS-----YKLIILDEAD 212
L +LELNASD+RGI +VRD+I FA + M +K+IILDEAD
Sbjct: 87 RQLFGSLYKDRILELNASDERGIQVVRDKIKTFAQLTAGGMRDDGKRCPPFKIIILDEAD 146
Query: 213 AMTNDAQNALRRKL 226
+MT AQ ALRR +
Sbjct: 147 SMTAAAQAALRRTM 160
>gi|308807567|ref|XP_003081094.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
gi|116059556|emb|CAL55263.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
Length = 342
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 99/151 (65%), Gaps = 6/151 (3%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +PH LFYGPPGTGKTT LA A++LY + V ELNASD+RGI +VRD
Sbjct: 40 LEQALETGNMPHCLFYGPPGTGKTTCALAIAKQLYGPELYKQRVKELNASDERGISVVRD 99
Query: 357 QIFQFAS------TKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
++ FAS YK++ILDEADAMT DAQ+A+RR++E ++ RF ++CNY
Sbjct: 100 KVKTFASLAVGAPAPGYPSPPYKILILDEADAMTTDAQSAMRRMMETYSKVTRFFLLCNY 159
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
++KI I SRC +FRF PL + +RL Y
Sbjct: 160 VTKIIDPITSRCAKFRFQPLALETMTTRLKY 190
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 97/197 (49%), Gaps = 26/197 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ++CNY++KI I SRC +FRF PL + +RL Y+ EQE + ++ D
Sbjct: 144 METYSKVTRFFLLCNYVTKIIDPITSRCAKFRFQPLALETMTTRLKYIAEQESLELSDDV 203
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------LVSRVEKYRPSTLD 112
A S GDMRK + +LQSAA + +V+ I + L + ++ + D
Sbjct: 204 FPACSKHSGGDMRKAITLLQSAARLFSGKVDAAGIVEVAGYIPDVKLTTLLDLCKSGDFD 263
Query: 113 ELVSH------------------QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
+ +H DI+ + + + D+ +KM +++ LA G E +Q
Sbjct: 264 KAQAHMEDILRDGYSGIKIMDQLSDIVLEADCSDEIKGDIFMKMGEVDRALAQGADEGLQ 323
Query: 155 LSALIAAFNSARDKLEV 171
L+ ++++ + +K V
Sbjct: 324 LATVVSSAIKSFEKYPV 340
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 108/255 (42%), Gaps = 79/255 (30%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP T+ ++ S + ++ +E L+ ++ + L G + + +A
Sbjct: 19 VEKYRPKTVRDVASQEQVVRVLE--------QALETGNMPHCLFYGPPGTGKTTCALAIA 70
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS------TKTMHKSSYKLIILDEAD 212
+ K V ELNASD+RGI +VRD++ FAS YK++ILDEAD
Sbjct: 71 KQLYGPELYKQRVKELNASDERGISVVRDKVKTFASLAVGAPAPGYPSPPYKILILDEAD 130
Query: 213 AMTNDAQNALRRKL---------------------PVTPD-------------------- 231
AMT DAQ+A+RR + P+T
Sbjct: 131 AMTTDAQSAMRRMMETYSKVTRFFLLCNYVTKIIDPITSRCAKFRFQPLALETMTTRLKY 190
Query: 232 -GKKAIIDLSD-----------GDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEI 279
++ ++LSD GDMRK + +LQSAA + +V+ + GY ++
Sbjct: 191 IAEQESLELSDDVFPACSKHSGGDMRKAITLLQSAARLFSGKVDAAGIVEVAGYIPDVKL 250
Query: 280 TNILRWLLNESMDLC 294
T +L DLC
Sbjct: 251 TTLL--------DLC 257
>gi|241957153|ref|XP_002421296.1| replication factor C subunit, putative [Candida dubliniensis CD36]
gi|223644640|emb|CAX40630.1| replication factor C subunit, putative [Candida dubliniensis CD36]
Length = 364
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/151 (50%), Positives = 100/151 (66%), Gaps = 10/151 (6%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
I LPH+LFYGPPGTGKT+TILA A++LY + + VLELNASD+RGI IVR++I
Sbjct: 53 IKSGNLPHMLFYGPPGTGKTSTILALAKELYGPNLYKSRVLELNASDERGISIVREKIKN 112
Query: 361 FASTKTMHKSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
FA + + YK+IILDEAD+MT DAQ+ALRR +E + RF +ICNY
Sbjct: 113 FARLTISNPTKEDLANYPCPPYKIIILDEADSMTYDAQSALRRTMENYAGITRFVLICNY 172
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+++I I SRC++FRF L++ RL Y
Sbjct: 173 ITRIIDPITSRCSKFRFKLLNNENAQLRLKY 203
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +L ++ S + I ++ +K ++ + L G + S ++A
Sbjct: 28 VEKYRPKSLSDVSSQEHTIK--------VLTQTIKSGNLPHMLFYGPPGTGKTSTILALA 79
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIIL 208
+ K VLELNASD+RGI IVR++I FA + + YK+IIL
Sbjct: 80 KELYGPNLYKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLANYPCPPYKIIIL 139
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 140 DEADSMTYDAQSALRRTM 157
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF +ICNY+++I I SRC++FRF L++ RL Y+ +QE +
Sbjct: 157 MENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLRLKYIGQQENLRFDKGQ 216
Query: 61 KKAIID----LSDGDMRKVLNILQSAA 83
+ +I +S GD+RK + LQSAA
Sbjct: 217 EDQVIQELLKISGGDLRKAITYLQSAA 243
>gi|50513624|pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 102/146 (69%), Gaps = 10/146 (6%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA--- 362
LPH+LFYGPPGTGKT+TILA ++LY + +LELNASD+RGI IVR+++ FA
Sbjct: 58 LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLT 117
Query: 363 -STKTMHK------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
S + H YK+IILDEAD+MT DAQ+ALRR +E ++ RFC+ICNY+++I
Sbjct: 118 VSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRII 177
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ S+C++FRF LD+S + RL +
Sbjct: 178 DPLASQCSKFRFKALDASNAIDRLRF 203
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 70/127 (55%), Gaps = 13/127 (10%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + S+C++FRF LD+S + RL ++ EQE V
Sbjct: 157 METYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGV 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAA-------------TAHADEVNEDTIFTLLVSRVEKYR 107
+ I+D+S GD+R+ + +LQSA+ + +E+ +L+ VEK +
Sbjct: 217 LERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVK 276
Query: 108 PSTLDEL 114
DE+
Sbjct: 277 SGDFDEI 283
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LDE+ + ++ ++ LK +++ + L G + S ++A
Sbjct: 28 VEKYRPKNLDEVTAQDHAVTVLK--------KTLKSANLPHMLFYGPPGTGKTSTILALT 79
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA----STKTMHK------SSYKLIIL 208
+ K +LELNASD+RGI IVR+++ FA S + H YK+IIL
Sbjct: 80 KELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIIL 139
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 140 DEADSMTADAQSALRRTM 157
>gi|256811337|ref|YP_003128706.1| replication factor C small subunit [Methanocaldococcus fervens
AG86]
gi|256794537|gb|ACV25206.1| Replication factor C [Methanocaldococcus fervens AG86]
Length = 316
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 99/148 (66%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +++++ +PHLLF GPPG GKTT L AR L+ + + LELNASD+RGI
Sbjct: 22 EIVKRLKKYVEKKSMPHLLFSGPPGVGKTTAALCLARDLFGE-NWRENFLELNASDERGI 80
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ FA TK + +K+I LDE+DA+T DAQNALRR +EK++ RF + CNY
Sbjct: 81 DVIRTKVKDFARTKPIGDVPFKIIFLDESDALTPDAQNALRRTMEKYSDVCRFILSCNYP 140
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI P IQSRC FRF PL I +L
Sbjct: 141 SKIIPPIQSRCAIFRFSPLKKEDIAKKL 168
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 99/188 (52%), Gaps = 30/188 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RF + CNY SKI P IQSRC FRF PL I +L + E+E + +T G
Sbjct: 124 MEKYSDVCRFILSCNYPSKIIPPIQSRCAIFRFSPLKKEDIAKKLKEIAEKEGLKLTESG 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDEL------ 114
+AII +S+GDMRK +N+LQ+AA EV +D I + SR + EL
Sbjct: 184 LEAIIYVSEGDMRKAINVLQTAAALS--EVIDDEIVYKVSSRARPEEVKKMMELALEGKF 241
Query: 115 ---------------VSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+S +DI I+ ++I E V+L + + ++R+ G +E+
Sbjct: 242 VEARDLLYKLMVEWGMSGEDILNQMFREINNLDIDERKKVELADAIGETDFRIVEGANER 301
Query: 153 IQLSALIA 160
IQLSAL+A
Sbjct: 302 IQLSALLA 309
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 118/258 (45%), Gaps = 75/258 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TLDE+V +I+ L V K S + + L +G + AA
Sbjct: 6 VEKYRPKTLDEIVGQDEIVKR-------LKKYVEKKS-MPHLLFSGPP---GVGKTTAAL 54
Query: 163 NSARD------KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
ARD + LELNASD+RGI ++R ++ FA TK + +K+I LDE+DA+T
Sbjct: 55 CLARDLFGENWRENFLELNASDERGIDVIRTKVKDFARTKPIGDVPFKIIFLDESDALTP 114
Query: 217 DAQNALRRKL---------------------PV--------------------------- 228
DAQNALRR + P+
Sbjct: 115 DAQNALRRTMEKYSDVCRFILSCNYPSKIIPPIQSRCAIFRFSPLKKEDIAKKLKEIAEK 174
Query: 229 -----TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
T G +AII +S+GDMRK +N+LQ+AA A ++ ++++ VY E+ ++
Sbjct: 175 EGLKLTESGLEAIIYVSEGDMRKAINVLQTAA-ALSEVIDDEIVYKVSSRARPEEVKKMM 233
Query: 284 RWLLN----ESMDLCYKI 297
L E+ DL YK+
Sbjct: 234 ELALEGKFVEARDLLYKL 251
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 37/57 (64%)
Query: 461 IEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
+E G++ DIL ++ ++ L+I E V+L + + ++R+ G +E+IQLSAL+A
Sbjct: 253 VEWGMSGEDILNQMFREINNLDIDERKKVELADAIGETDFRIVEGANERIQLSALLA 309
>gi|440301872|gb|ELP94258.1| replication factor C subunit, putative [Entamoeba invadens IP1]
Length = 337
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/137 (53%), Positives = 96/137 (70%), Gaps = 4/137 (2%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LP+LLF+GPPG+GKTT+ILA +R+L+ F VLELNAS++RGI ++R + +A
Sbjct: 48 LPNLLFFGPPGSGKTTSILALSRELFGNC-FKDRVLELNASNERGIDMIRTTLKNYAMQD 106
Query: 366 TMHKSS---YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRC 422
H+ YKLIILDE+DA+T DAQ ALRR++E FT N RFC+ICNY+S+I P I SRC
Sbjct: 107 VSHQDGIPDYKLIILDESDALTPDAQTALRRMMEDFTRNTRFCLICNYISRILPPISSRC 166
Query: 423 TRFRFGPLDSSLIMSRL 439
+FRF L + L
Sbjct: 167 IKFRFNALPQETVFEHL 183
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 53/80 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E FT N RFC+ICNY+S+I P I SRC +FRF L + L + E+EK +VTP+
Sbjct: 139 MEDFTRNTRFCLICNYISRILPPISSRCIKFRFNALPQETVFEHLTSICEKEKFDVTPEA 198
Query: 61 KKAIIDLSDGDMRKVLNILQ 80
KA+ LS+GDMR + +LQ
Sbjct: 199 IKAVGKLSEGDMRYAIGLLQ 218
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 96/236 (40%), Gaps = 62/236 (26%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP LDE+ +++I ++ L + ++ + G+ + + AL
Sbjct: 20 EKYRPKKLDEVKGQEEVIKLLK------SSLTSGLPNLLFFGPPGSGKTTSILALSRELF 73
Query: 164 SARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---YKLIILDEADAMTNDAQN 220
K VLELNAS++RGI ++R + +A H+ YKLIILDE+DA+T DAQ
Sbjct: 74 GNCFKDRVLELNASNERGIDMIRTTLKNYAMQDVSHQDGIPDYKLIILDESDALTPDAQT 133
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR K
Sbjct: 134 ALRRMMEDFTRNTRFCLICNYISRILPPISSRCIKFRFNALPQETVFEHLTSICEKEKFD 193
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
VTP+ KA+ LS+GDMR + +LQ + V + N G EI+ I+
Sbjct: 194 VTPEAIKAVGKLSEGDMRYAIGLLQKLSQGVRHSVTPQDISNVAGVVPNLEISQII 249
>gi|448730730|ref|ZP_21713035.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
gi|445793171|gb|EMA43761.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 96/135 (71%), Gaps = 2/135 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++ +N+LPHLLF GP G GKTT+ +A AR++Y + LELNASD+RGI +VR
Sbjct: 36 RLESYVAQNDLPHLLFSGPAGVGKTTSSMAIAREVYGD-DWRENFLELNASDERGIDVVR 94
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA T + Y++I LDEADA+T+DAQ+ALRR +E+F N RF + CNY S+I
Sbjct: 95 DRIKDFART-SFGGYDYRIIFLDEADALTSDAQSALRRTMEQFANNTRFILSCNYSSQII 153
Query: 416 PAIQSRCTRFRFGPL 430
IQSRC FRFGPL
Sbjct: 154 DPIQSRCAVFRFGPL 168
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 28/181 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F N RF + CNY S+I IQSRC FRFGPL + + V E E + VT DG
Sbjct: 133 MEQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAEEAVGEYIRRVAENEGIEVTDDG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLV-SRVEKYRP----------- 108
A++ +DGDMRK LN LQ+AAT V+++ ++ + +R E+
Sbjct: 193 VDALVYAADGDMRKALNGLQAAATMEG-AVDDEAVYGITATARPEEIEAMVERALDGDFT 251
Query: 109 ---STLDELVS-----HQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ LD+L++ D+I + ++ ++ V L+ ++ + +YR+ G +E++
Sbjct: 252 AARAKLDDLLTDAGLGGGDVIDQLHRSAWDFDLDDAATVRLLERVGETDYRITQGANERL 311
Query: 154 Q 154
Q
Sbjct: 312 Q 312
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 110/242 (45%), Gaps = 66/242 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE--KIQLSALIA 160
+EKYRP TL ++V H++I+ +E + +D+ + L +G + K S IA
Sbjct: 16 IEKYRPETLADVVGHENIVGRLES--------YVAQNDLPHLLFSGPAGVGKTTSSMAIA 67
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D E LELNASD+RGI +VRD+I FA T + Y++I LDEADA+T+DAQ
Sbjct: 68 REVYGDDWRENFLELNASDERGIDVVRDRIKDFART-SFGGYDYRIIFLDEADALTSDAQ 126
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 127 SALRRTMEQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAEEAVGEYIRRVAENEGI 186
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
VT DG A++ +DGDMRK LN LQ+AAT V+++ VY EI ++
Sbjct: 187 EVTDDGVDALVYAADGDMRKALNGLQAAATMEG-AVDDEAVYGITATARPEEIEAMVERA 245
Query: 287 LN 288
L+
Sbjct: 246 LD 247
>gi|146324243|ref|XP_753175.2| replication factor C subunit [Aspergillus fumigatus Af293]
gi|129557997|gb|EAL91137.2| replication factor C subunit [Aspergillus fumigatus Af293]
gi|159127094|gb|EDP52210.1| replication factor C subunit [Aspergillus fumigatus A1163]
Length = 389
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/151 (52%), Positives = 100/151 (66%), Gaps = 8/151 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ F+ + PHLLF+GPPGTGKT+TILA AR+LY A + MVLELNASDDR + V+
Sbjct: 43 LKSFMIHRKFPHLLFHGPPGTGKTSTILALARQLYGDADMSQMVLELNASDDRSVHDVQI 102
Query: 357 QIFQFASTKTMHK--------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
+I FAST+ + K + +KL+ILDEAD M + AQ ALRRIIE + RFCII
Sbjct: 103 RIKAFASTRPIFKVPLRESPYNMFKLVILDEADTMDHTAQMALRRIIEDYAAFTRFCIIT 162
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
N + K+ PA+ SRC R RF PL S I + L
Sbjct: 163 NNIHKLLPALISRCARLRFPPLRPSAIRTLL 193
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 45/80 (56%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE + RFCII N + K+ PA+ SRC R RF PL S I + L V E + V P+
Sbjct: 149 IEDYAAFTRFCIITNNIHKLLPALISRCARLRFPPLRPSAIRTLLLQVATTENIQVRPEA 208
Query: 61 KKAIIDLSDGDMRKVLNILQ 80
+ + S GDMR+ L +LQ
Sbjct: 209 LEYLSTTSHGDMRQALAVLQ 228
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 71/130 (54%), Gaps = 14/130 (10%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
+KYRP+TL ++V + +S ++ S ++ K + + GT + + AL
Sbjct: 23 DKYRPATLKQVVGQDETLSVLK---SFMIHR--KFPHLLFHGPPGTGKTSTILALARQLY 77
Query: 164 SARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHK--------SSYKLIILDEADAM 214
D + VLELNASDDR + V+ +I FAST+ + K + +KL+ILDEAD M
Sbjct: 78 GDADMSQMVLELNASDDRSVHDVQIRIKAFASTRPIFKVPLRESPYNMFKLVILDEADTM 137
Query: 215 TNDAQNALRR 224
+ AQ ALRR
Sbjct: 138 DHTAQMALRR 147
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 454 IKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 513
I I +IK E GL L D+LT IS + ++P + + + +S+IE LA G SE+IQ +
Sbjct: 307 ISINQIKSETGLILADLLTAISARLQHAQVPAPVKITWLDALSEIEANLACGGSEEIQSA 366
Query: 514 ALIAAFNSARDKLEAPPDP 532
AL+ A +E P P
Sbjct: 367 ALVGAMKKGWSLME-PQGP 384
>gi|448471999|ref|ZP_21601026.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
gi|445820426|gb|EMA70249.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
Length = 327
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 98/143 (68%), Gaps = 2/143 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ +ID++++PHLLF GP G GKTT A AR++Y + + LELNASD RGI +VR
Sbjct: 39 RLQSYIDQDDIPHLLFSGPAGVGKTTAATAIAREVYGEDNWRGNFLELNASDQRGIDVVR 98
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA ++ ++++ LDEAD++T+DAQ+ALRR +E+F+ N RF + CNY SKI
Sbjct: 99 DRIKGFA--RSSFGGDFRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKII 156
Query: 416 PAIQSRCTRFRFGPLDSSLIMSR 438
IQSRC FRF PL + + +
Sbjct: 157 DPIQSRCAVFRFSPLSDAAVAGQ 179
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 30/182 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL + + + + E + VT G
Sbjct: 136 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDAAVAGQTREIAAAEGIEVTDAG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL----------------LVSRVE 104
A++ +DGDMR+ +N LQ+AAT D V+E+ ++ + L
Sbjct: 196 VDALVYAADGDMRRAINSLQAAATT-GDVVDEEAVYAITATARPEEIESMVTDALAGDFA 254
Query: 105 KYRPSTLDELVSH-----QDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEK 152
K R +TLD L++ D+I + ++ E V L+ ++ + +YR+A G +E+
Sbjct: 255 KAR-ATLDSLLTETGMAGGDVIDQLHRSVWEFDLSEREAVKLMERIGEADYRIAEGANEQ 313
Query: 153 IQ 154
+Q
Sbjct: 314 VQ 315
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 112/261 (42%), Gaps = 79/261 (30%)
Query: 80 QSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMS 139
Q+AATA E+ +EKYRP +L ++ + I+ ++ +
Sbjct: 7 QTAATATGREI-----------WIEKYRPQSLGDIHGQEAIVERLQ--------SYIDQD 47
Query: 140 DIEYRLAAGTSEKIQLSALIA----AFNSARDKLEVLELNASDDRGIGIVRDQIFQFAST 195
DI + L +G + + +A A + + LELNASD RGI +VRD+I FA
Sbjct: 48 DIPHLLFSGPAGVGKTTAATAIAREVYGEDNWRGNFLELNASDQRGIDVVRDRIKGFA-- 105
Query: 196 KTMHKSSYKLIILDEADAMTNDAQNALRRKL----------------------------- 226
++ ++++ LDEAD++T+DAQ+ALRR +
Sbjct: 106 RSSFGGDFRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAV 165
Query: 227 ------------------------PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEV 262
VT G A++ +DGDMR+ +N LQ+AAT D V
Sbjct: 166 FRFSPLSDAAVAGQTREIAAAEGIEVTDAGVDALVYAADGDMRRAINSLQAAATT-GDVV 224
Query: 263 NEDTVYNSVGYPTKTEITNIL 283
+E+ VY EI +++
Sbjct: 225 DEEAVYAITATARPEEIESMV 245
>gi|433431944|ref|ZP_20407710.1| replication factor C small subunit [Haloferax sp. BAB2207]
gi|432193760|gb|ELK50452.1| replication factor C small subunit [Haloferax sp. BAB2207]
Length = 327
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 99/148 (66%), Gaps = 2/148 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ +I+ ++LPHLLF GP G GKTT+ A AR +Y + LELNASD+RGI
Sbjct: 34 DIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD-DWRGNFLELNASDERGI 92
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + + Y++I LDEAD++TNDAQ+ALRR +E+F+ N RF + CNY
Sbjct: 93 DVVRDRIKNFARS-SFGGHDYRVIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYS 151
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI IQSRC FRF PL I ++
Sbjct: 152 SKIIDPIQSRCAVFRFSPLGDDAIAEQV 179
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 36/185 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL I ++ + E + VT DG
Sbjct: 135 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIAAAEDIEVTEDG 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
A++ + GDMR+ +N LQ+AAT + V+ED ++ + + RP ++E+V
Sbjct: 195 LDALVYAAGGDMRRAINSLQAAATT-GEVVDEDAVYMITST----ARPEDIEEMVRAAID 249
Query: 116 -------------------SHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
+ DII + ++ E V L+ ++ + +YR++ G
Sbjct: 250 GEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDERDAVRLMERIGEADYRISEGA 309
Query: 150 SEKIQ 154
+E++Q
Sbjct: 310 NEQVQ 314
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 99/222 (44%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
+EKYRP T D++ DI+ + ++ D+ + L AG + +A+
Sbjct: 18 IEKYRPQTFDDVYGQDDIVERLR--------SYIERDDLPHLLFAGPAGVGKTTSATAIA 69
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
A + LELNASD+RGI +VRD+I FA + + Y++I LDEAD++TNDAQ
Sbjct: 70 RAIYGDDWRGNFLELNASDERGIDVVRDRIKNFARS-SFGGHDYRVIFLDEADSLTNDAQ 128
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIAAAEDI 188
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
VT DG A++ + GDMR+ +N LQ+AAT + V+ED VY
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEDAVY 229
>gi|292654383|ref|YP_003534280.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448293928|ref|ZP_21484030.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448597682|ref|ZP_21654607.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
gi|291370302|gb|ADE02529.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445569321|gb|ELY23895.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445739143|gb|ELZ90652.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
Length = 327
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 99/148 (66%), Gaps = 2/148 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ +I+ ++LPHLLF GP G GKTT+ A AR +Y + LELNASD+RGI
Sbjct: 34 DIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD-DWRGNFLELNASDERGI 92
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + + Y++I LDEAD++TNDAQ+ALRR +E+F+ N RF + CNY
Sbjct: 93 DVVRDRIKNFARS-SFGGHDYRVIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYS 151
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI IQSRC FRF PL I ++
Sbjct: 152 SKIIDPIQSRCAVFRFSPLGDDAIAEQV 179
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 36/185 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL I ++ + E + VT DG
Sbjct: 135 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIAAAEDIEVTEDG 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
A++ + GDMR+ +N LQ+AAT + V+E+ ++ + + RP ++E+V
Sbjct: 195 LDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYMITST----ARPEDIEEMVRAAID 249
Query: 116 -------------------SHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
+ DII + ++ E V L+ ++ + +YR++ G
Sbjct: 250 GEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDERDAVRLMERIGEADYRISEGA 309
Query: 150 SEKIQ 154
+E++Q
Sbjct: 310 NEQVQ 314
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
+EKYRP T D++ DI+ + ++ D+ + L AG + +A+
Sbjct: 18 IEKYRPQTFDDVYGQDDIVERLR--------SYIERDDLPHLLFAGPAGVGKTTSATAIA 69
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
A + LELNASD+RGI +VRD+I FA + + Y++I LDEAD++TNDAQ
Sbjct: 70 RAIYGDDWRGNFLELNASDERGIDVVRDRIKNFARS-SFGGHDYRVIFLDEADSLTNDAQ 128
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIAAAEDI 188
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
VT DG A++ + GDMR+ +N LQ+AAT + V+E+ VY
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVY 229
>gi|448573535|ref|ZP_21641018.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
gi|445718441|gb|ELZ70131.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
Length = 327
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 99/148 (66%), Gaps = 2/148 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ +I+ ++LPHLLF GP G GKTT+ A AR +Y + LELNASD+RGI
Sbjct: 34 DIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD-DWRGNFLELNASDERGI 92
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + + Y++I LDEAD++TNDAQ+ALRR +E+F+ N RF + CNY
Sbjct: 93 DVVRDRIKNFARS-SFGGHDYRVIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYS 151
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI IQSRC FRF PL I ++
Sbjct: 152 SKIIDPIQSRCAVFRFSPLGDDAIAEQV 179
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 36/185 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL I ++ + E + VT DG
Sbjct: 135 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIATAEDIEVTEDG 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
A++ + GDMR+ +N LQ+AAT + V+E+ ++ + + RP ++E+V
Sbjct: 195 LDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYMITST----ARPEDIEEMVRAAID 249
Query: 116 -------------------SHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
+ DII + ++ E V L+ ++ + +YR++ G
Sbjct: 250 GEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDERDAVRLMERIGEADYRISEGA 309
Query: 150 SEKIQ 154
+E++Q
Sbjct: 310 NEQVQ 314
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
+EKYRP T D++ DI+ + ++ D+ + L AG + +A+
Sbjct: 18 IEKYRPQTFDDVYGQDDIVERLR--------SYIERDDLPHLLFAGPAGVGKTTSATAIA 69
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
A + LELNASD+RGI +VRD+I FA + + Y++I LDEAD++TNDAQ
Sbjct: 70 RAIYGDDWRGNFLELNASDERGIDVVRDRIKNFARS-SFGGHDYRVIFLDEADSLTNDAQ 128
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIATAEDI 188
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
VT DG A++ + GDMR+ +N LQ+AAT + V+E+ VY
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVY 229
>gi|409728331|ref|ZP_11271198.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|448722058|ref|ZP_21704598.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|445790282|gb|EMA40949.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
Length = 323
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/144 (49%), Positives = 99/144 (68%), Gaps = 2/144 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ ++ +++LPHLLF GP G GKTT+ +A AR++Y + LELNASD+RGI
Sbjct: 30 DIVGRLESYVAQDDLPHLLFTGPAGVGKTTSAMAIAREVYGD-DWRENFLELNASDERGI 88
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + Y++I LDEADA+T+DAQ+ALRR +E+F N RF + CNY
Sbjct: 89 DVVRDRIKNFARA-SFGGYDYRIIFLDEADALTSDAQSALRRTMEQFANNTRFILSCNYS 147
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLI 435
++I IQSRC FRFGPLD +
Sbjct: 148 NQIIDPIQSRCAVFRFGPLDGDSV 171
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 28/181 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F N RF + CNY ++I IQSRC FRFGPLD + + + E+E + +T DG
Sbjct: 131 MEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLDGDSVAEYVRRIAEEEGIEITEDG 190
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVS-RVEKYRP----------- 108
A++ +DGDMRK +N LQ+AAT + V+E+ ++ + + R E+
Sbjct: 191 IDALVYAADGDMRKAINGLQAAATT-GETVDEEAVYAITAAVRPEQIETMVTTALDGDFT 249
Query: 109 ---STLDELVSH-----QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ LD+L++ D+I + ++ + V L+ ++ + +YR++ G +E++
Sbjct: 250 AARAKLDDLLTEAGLGGGDVIDQLHRSAWSFDLDDRATVRLLERVGETDYRISQGANERL 309
Query: 154 Q 154
Q
Sbjct: 310 Q 310
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 96/221 (43%), Gaps = 64/221 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP L + H DI+ +E + + L L+ AG + A+
Sbjct: 14 IEKYRPQRLSAVAGHADIVGRLESYVAQDDLPHLLFTGP-------AGVGKTTSAMAIAR 66
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELNASD+RGI +VRD+I FA + Y++I LDEADA+T+DAQ+
Sbjct: 67 EVYGDDWRENFLELNASDERGIDVVRDRIKNFARA-SFGGYDYRIIFLDEADALTSDAQS 125
Query: 221 ALRRKL-----------------------------------------------------P 227
ALRR +
Sbjct: 126 ALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLDGDSVAEYVRRIAEEEGIE 185
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
+T DG A++ +DGDMRK +N LQ+AAT + V+E+ VY
Sbjct: 186 ITEDGIDALVYAADGDMRKAINGLQAAATT-GETVDEEAVY 225
>gi|41614964|ref|NP_963462.1| replication factor C small subunit [Nanoarchaeum equitans Kin4-M]
gi|42559422|sp|P60374.1|RFCS_NANEQ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|40068688|gb|AAR39023.1| NEQ170 [Nanoarchaeum equitans Kin4-M]
Length = 322
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 146/292 (50%), Gaps = 68/292 (23%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
F+++ +PHLLF GPPGTGKTT LA A +LY A + LELNASD+RGI ++R ++
Sbjct: 29 FVEKKNMPHLLFAGPPGTGKTTAALALAHELYGDA-WRENFLELNASDERGIDVIRHKVK 87
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
+FA K + +K++ LDEADA+T DAQ ALRRI+EK++ + RF + CNY SKI IQ
Sbjct: 88 EFARAKPIGDVPFKIVFLDEADALTRDAQQALRRIMEKYSQSTRFILSCNYFSKIIEPIQ 147
Query: 420 SRCTRFRFGPLD--------------SSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGL 465
SR T F+F PL+ LI+ D + ++I ++ + I I +
Sbjct: 148 SRVTVFKFKPLEKEAFRELINRIVKGEGLILENEDEIINALYDIAEGDLR-KAINILQAA 206
Query: 466 AL------TDILTEISLLVHRLEIPE--------------SMLVDLVL------------ 493
A+ D L EI+ + EI E SML+DL+L
Sbjct: 207 AMMSKTITVDRLYEIASIAKPKEIDEVLNKAMQGNFLEARSMLIDLMLKYGMSGEDVIKA 266
Query: 494 --------------------KMSDIEYRLAAGTSEKIQLSALIAAFNSARDK 525
K+ DIE+R+ G + +QL AL+A + K
Sbjct: 267 IQKRVWSLPISDREKLMILDKIGDIEFRIVEGADDLVQLDALLAWLGLGKYK 318
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 100/196 (51%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ + RF + CNY SKI IQSR T F+F PL+ ++ +++ E + + +
Sbjct: 123 MEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKGEGLILENED 182
Query: 61 K--KAIIDLSDGDMRKVLNILQSAA----TAHADEVNE----------DTIF-------- 96
+ A+ D+++GD+RK +NILQ+AA T D + E D +
Sbjct: 183 EIINALYDIAEGDLRKAINILQAAAMMSKTITVDRLYEIASIAKPKEIDEVLNKAMQGNF 242
Query: 97 ----TLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
++L+ + KY S D + + Q + ++ I + + ++ K+ DIE+R+ G +
Sbjct: 243 LEARSMLIDLMLKYGMSGEDVIKAIQKRVWSLPISDREKLMILDKIGDIEFRIVEGADDL 302
Query: 153 IQLSALIAAFNSARDK 168
+QL AL+A + K
Sbjct: 303 VQLDALLAWLGLGKYK 318
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 9/123 (7%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLK--MSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP +D++++ ++I + L V K M + + GT + AL
Sbjct: 6 EKYRPKRIDDIINQEEI-------KKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHE 58
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R ++ +FA K + +K++ LDEADA+T DAQ A
Sbjct: 59 LYGDAWRENFLELNASDERGIDVIRHKVKEFARAKPIGDVPFKIVFLDEADALTRDAQQA 118
Query: 222 LRR 224
LRR
Sbjct: 119 LRR 121
>gi|227830342|ref|YP_002832122.1| replication factor C small subunit [Sulfolobus islandicus L.S.2.15]
gi|229579159|ref|YP_002837557.1| replication factor C small subunit [Sulfolobus islandicus
Y.G.57.14]
gi|284997767|ref|YP_003419534.1| replication factor C [Sulfolobus islandicus L.D.8.5]
gi|227456790|gb|ACP35477.1| Replication factor C [Sulfolobus islandicus L.S.2.15]
gi|228009873|gb|ACP45635.1| Replication factor C [Sulfolobus islandicus Y.G.57.14]
gi|284445662|gb|ADB87164.1| Replication factor C [Sulfolobus islandicus L.D.8.5]
Length = 330
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ +F+ E +PHLLF GPPGTGKTT LA LY + LELNASD+RGI ++R
Sbjct: 31 RLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGD-NYVEYFLELNASDERGIDVIR 89
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T +K+++LDEAD MT DAQ ALRR +E +T N RF + CNYLSKI
Sbjct: 90 NKVKEFARTVIPSNVPFKVVLLDEADNMTADAQQALRRTMELYTENTRFILACNYLSKII 149
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSR FRF PL +++RL Y
Sbjct: 150 EPIQSRTALFRFYPLKKEDVVNRLVY 175
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 93/187 (49%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T N RF + CNYLSKI IQSR FRF PL +++RL Y+ + EK
Sbjct: 129 MELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNEKAEYDQKA 188
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNEDTIFTL---LVSR 102
+ I D++ GDMRK +NILQ+A+ A EV E L
Sbjct: 189 LETIYDITMGDMRKSINILQAASAYGKISVEAVFKVLGLAQPKEVREMISLALQGKFTQA 248
Query: 103 VEKYRPSTLDELVSHQDII---------STIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
EK R + +S +DII S ++I E + V L+ + + E+R+ G ++I
Sbjct: 249 REKLRTLLVTYGLSGEDIIKQIHREITSSELQISEELRVLLLDYIGETEFRIIEGADDEI 308
Query: 154 QLSALIA 160
QLSAL+A
Sbjct: 309 QLSALLA 315
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 66/241 (27%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP TLD++V+ ++II ++ +K ++ + L AG + +A +A +
Sbjct: 12 EKYRPRTLDDIVNQREIIDRLK--------KFVKEKNMPHLLFAGPPGTGKTTAALALVH 63
Query: 164 SARDKLEV---LELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
V LELNASD+RGI ++R+++ +FA T +K+++LDEAD MT DAQ
Sbjct: 64 DLYGDNYVEYFLELNASDERGIDVIRNKVKEFARTVIPSNVPFKVVLLDEADNMTADAQQ 123
Query: 221 ALRRKLPVTPDGKKAII------------------------------------------- 237
ALRR + + + + I+
Sbjct: 124 ALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNEKAE 183
Query: 238 ----------DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
D++ GDMRK +NILQ AA+A+ +++ + V+ +G E+ ++ L
Sbjct: 184 YDQKALETIYDITMGDMRKSINILQ-AASAYG-KISVEAVFKVLGLAQPKEVREMISLAL 241
Query: 288 N 288
Sbjct: 242 Q 242
>gi|227827646|ref|YP_002829426.1| replication factor C small subunit [Sulfolobus islandicus M.14.25]
gi|229584850|ref|YP_002843352.1| replication factor C small subunit [Sulfolobus islandicus M.16.27]
gi|238619814|ref|YP_002914640.1| replication factor C small subunit [Sulfolobus islandicus M.16.4]
gi|385773316|ref|YP_005645882.1| replication factor C [Sulfolobus islandicus HVE10/4]
gi|385775948|ref|YP_005648516.1| replication factor C [Sulfolobus islandicus REY15A]
gi|227459442|gb|ACP38128.1| Replication factor C [Sulfolobus islandicus M.14.25]
gi|228019900|gb|ACP55307.1| Replication factor C [Sulfolobus islandicus M.16.27]
gi|238380884|gb|ACR41972.1| Replication factor C [Sulfolobus islandicus M.16.4]
gi|323474696|gb|ADX85302.1| Replication factor C [Sulfolobus islandicus REY15A]
gi|323477430|gb|ADX82668.1| Replication factor C [Sulfolobus islandicus HVE10/4]
Length = 330
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ +F+ E +PHLLF GPPGTGKTT LA LY + LELNASD+RGI ++R
Sbjct: 31 RLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGD-NYVEYFLELNASDERGIDVIR 89
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T +K+++LDEAD MT DAQ ALRR +E +T N RF + CNYLSKI
Sbjct: 90 NKVKEFARTVIPGNVPFKVVLLDEADNMTADAQQALRRTMELYTENTRFILACNYLSKII 149
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSR FRF PL +++RL Y
Sbjct: 150 EPIQSRTALFRFYPLKKEDVVNRLVY 175
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 93/187 (49%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T N RF + CNYLSKI IQSR FRF PL +++RL Y+ + EK
Sbjct: 129 MELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNEKAEYDQKA 188
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNEDTIFTL---LVSR 102
+ I D++ GDMRK +NILQ+A+ A EV E L
Sbjct: 189 LETIYDITMGDMRKSINILQAASAYGKISVEAVFKVLGLAQPKEVREMISLALQGKFTQA 248
Query: 103 VEKYRPSTLDELVSHQDII---------STIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
EK R + +S +DII S ++I E + V L+ + + E+R+ G ++I
Sbjct: 249 REKLRTLLVTYGLSGEDIIKQIHREITSSELQISEELRVLLLDYIGETEFRIIEGADDEI 308
Query: 154 QLSALIA 160
QLSAL+A
Sbjct: 309 QLSALLA 315
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 66/241 (27%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP TLD++V+ ++II ++ +K ++ + L AG + +A +A +
Sbjct: 12 EKYRPRTLDDIVNQREIIDRLK--------KFVKEKNMPHLLFAGPPGTGKTTAALALVH 63
Query: 164 SARDKLEV---LELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
V LELNASD+RGI ++R+++ +FA T +K+++LDEAD MT DAQ
Sbjct: 64 DLYGDNYVEYFLELNASDERGIDVIRNKVKEFARTVIPGNVPFKVVLLDEADNMTADAQQ 123
Query: 221 ALRRKLPVTPDGKKAII------------------------------------------- 237
ALRR + + + + I+
Sbjct: 124 ALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNEKAE 183
Query: 238 ----------DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
D++ GDMRK +NILQ AA+A+ +++ + V+ +G E+ ++ L
Sbjct: 184 YDQKALETIYDITMGDMRKSINILQ-AASAYG-KISVEAVFKVLGLAQPKEVREMISLAL 241
Query: 288 N 288
Sbjct: 242 Q 242
>gi|15897670|ref|NP_342275.1| replication factor C small subunit [Sulfolobus solfataricus P2]
gi|284174995|ref|ZP_06388964.1| replication factor C small subunit [Sulfolobus solfataricus 98/2]
gi|384434284|ref|YP_005643642.1| replication factor C [Sulfolobus solfataricus 98/2]
gi|42559539|sp|Q9UXF5.1|RFCS_SULSO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=SsoRFC small subunit
gi|6015708|emb|CAB57535.1| activator 1, replication factor C, small subunit [Sulfolobus
solfataricus P2]
gi|13813941|gb|AAK41065.1| Activator 1, replication factor C, small subunit (rfc) [Sulfolobus
solfataricus P2]
gi|261602438|gb|ACX92041.1| Replication factor C [Sulfolobus solfataricus 98/2]
Length = 330
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ +F+ E +PHLLF GPPGTGKTT LA LY + LELNASD+RGI ++R
Sbjct: 31 RLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGD-NYTEYFLELNASDERGIDVIR 89
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T +K+++LDEAD MT DAQ ALRR +E +T N RF + CNYLSKI
Sbjct: 90 NKVKEFARTVIPGDIPFKVVLLDEADNMTADAQQALRRTMELYTENTRFILACNYLSKII 149
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSR FRF PL +++RL Y
Sbjct: 150 EPIQSRTALFRFYPLKKEDVVNRLIY 175
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 35/191 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T N RF + CNYLSKI IQSR FRF PL +++RL Y+ + EK
Sbjct: 129 MELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNEKAEYDQKA 188
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNE------------- 92
+ I D++ GDMRK +NILQ+A+ A EV E
Sbjct: 189 LETIYDITMGDMRKSINILQAASAYGKISVEAVFKVLGLAQPKEVREMINLALQGKFTQA 248
Query: 93 -DTIFTLLVSRVEKYRPSTLDELVS-HQDIIST-IEIPESMLVDLVLKMSDIEYRLAAGT 149
D + TLL++ Y S D + H++I S+ I+I E + V L+ + + E+R+ G
Sbjct: 249 RDKLRTLLIT----YGLSGEDIVKQIHREITSSEIQISEELRVLLLDYIGETEFRIIEGA 304
Query: 150 SEKIQLSALIA 160
++IQLSAL+A
Sbjct: 305 DDEIQLSALLA 315
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 106/240 (44%), Gaps = 64/240 (26%)
Query: 104 EKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP TLD++V+ ++II ++ + E M + + GT + AL+
Sbjct: 12 EKYRPKTLDDIVNQREIIDRLKKFVKEK-------NMPHLLFAGPPGTGKTTAALALVHD 64
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
LELNASD+RGI ++R+++ +FA T +K+++LDEAD MT DAQ A
Sbjct: 65 LYGDNYTEYFLELNASDERGIDVIRNKVKEFARTVIPGDIPFKVVLLDEADNMTADAQQA 124
Query: 222 LRRKLPVTPDGKKAII-------------------------------------------- 237
LRR + + + + I+
Sbjct: 125 LRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNEKAEY 184
Query: 238 ---------DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
D++ GDMRK +NILQ AA+A+ +++ + V+ +G E+ ++ L
Sbjct: 185 DQKALETIYDITMGDMRKSINILQ-AASAYG-KISVEAVFKVLGLAQPKEVREMINLALQ 242
>gi|435845437|ref|YP_007307687.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
gi|433671705|gb|AGB35897.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
Length = 330
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 112/178 (62%), Gaps = 19/178 (10%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ R++++N+LPHLLF GP GTGKTT A AR++Y + LELNASD RGI
Sbjct: 36 DIVPRLQRYVEQNDLPHLLFAGPAGTGKTTAAQAIAREVYDD-DWRENFLELNASDQRGI 94
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + + +++I LDEADA+T+DAQ+ALRR +E+F++N RF + CNY
Sbjct: 95 DVVRDRIKDFARS-SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSSNTRFILSCNYS 153
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTD 469
S+I IQSRC FRF L + + +I+EI E+G+ +TD
Sbjct: 154 SQIIDPIQSRCAVFRFTELTEDALEA-----------------QIREIATEEGIEVTD 194
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 106/189 (56%), Gaps = 28/189 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F++N RF + CNY S+I IQSRC FRF L + +++ + +E + VT DG
Sbjct: 137 MEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDALEAQIREIATEEGIEVTDDG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-VSRVEKYRP----------- 108
A+I +DGDMRK +N LQ+AA + V+E+T+F + +R E+
Sbjct: 197 VDALIYAADGDMRKAINGLQAAAV-MGEVVDEETVFAITSTARPEEVEAMVDQAIDGDFT 255
Query: 109 ---STLDELVSHQ-----DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ L++L++ + D+I + +I E+ V L+ ++ +++YR+ G +E++
Sbjct: 256 AARAALEDLLTERGLAGGDVIDQLHRSAWQFDISETATVRLLERLGEVDYRITEGANERL 315
Query: 154 QLSALIAAF 162
QL A++A+
Sbjct: 316 QLEAMLASL 324
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 108/234 (46%), Gaps = 68/234 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP LDE+ H+DI+ ++ ++ +D+ + L AG + + +A A
Sbjct: 20 IEKYRPERLDEIKGHEDIVPRLQ--------RYVEQNDLPHLLFAGPAGTGKTTAAQAIA 71
Query: 163 NSARD---KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D + LELNASD RGI +VRD+I FA + + +++I LDEADA+T+DAQ
Sbjct: 72 REVYDDDWRENFLELNASDQRGIDVVRDRIKDFARS-SFGGYDHRIIFLDEADALTSDAQ 130
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 131 SALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDALEAQIREIATEEGI 190
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY--NSVGYPTKTE 278
VT DG A+I +DGDMRK +N LQ+AA + V+E+TV+ S P + E
Sbjct: 191 EVTDDGVDALIYAADGDMRKAINGLQAAAV-MGEVVDEETVFAITSTARPEEVE 243
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 42/64 (65%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ E+GLA D++ ++ + +I E+ V L+ ++ +++YR+ G +E++QL A+
Sbjct: 261 LEDLLTERGLAGGDVIDQLHRSAWQFDISETATVRLLERLGEVDYRITEGANERLQLEAM 320
Query: 516 IAAF 519
+A+
Sbjct: 321 LASL 324
>gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1]
gi|150421641|sp|Q9YBS7.3|RFCS_AERPE RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|116062816|dbj|BAA80521.2| replication factor C small subunit [Aeropyrum pernix K1]
Length = 325
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 102/146 (69%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ +F+ + +PHLLF GPPGTGKTT A A L+ + + +LELNASD+RGI ++R
Sbjct: 30 RLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFGE-NYRQYMLELNASDERGINVIR 88
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA ++T + +K+++LDEAD MT+DAQ ALRR++E +++ RF +I NY SKI
Sbjct: 89 EKVKEFARSRTPPEIPFKIVLLDEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKII 148
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSRC FRF PL ++ RL Y
Sbjct: 149 DPIQSRCAFFRFQPLSKQDVIERLRY 174
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 39/204 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +++ RF +I NY SKI IQSRC FRF PL ++ RL Y+ E E V+ +
Sbjct: 128 MELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGVDYEEEA 187
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVS---- 116
AI ++S+GDMRK +N+LQ+A ++ +V D ++ + V +P + E+++
Sbjct: 188 LDAIYEISEGDMRKAINVLQAA--SYLGKVTVDAVYRV----VGMAKPREVREMLATALK 241
Query: 117 ----------------------------HQDIIST-IEIPESMLVDLVLKMSDIEYRLAA 147
H+++ ST +++PE + V + ++ YRL
Sbjct: 242 GDFTAARSLLRKIMIEYGMSGEDVARQIHRELFSTELKMPEELRVLAADYLGEVHYRLVE 301
Query: 148 GTSEKIQLSALIAAFNSARDKLEV 171
G+ + IQLSA +A KLEV
Sbjct: 302 GSDDDIQLSAFLAWLTMMSRKLEV 325
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 112/237 (47%), Gaps = 66/237 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG---TSEKIQLSALI 159
VEKYRP +LD++V + ++ ++ +K ++ + L AG T + AL
Sbjct: 10 VEKYRPRSLDDIVDQKHVVERLK--------QFVKQRNMPHLLFAGPPGTGKTTAAHALA 61
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
+ +LELNASD+RGI ++R+++ +FA ++T + +K+++LDEAD MT+DAQ
Sbjct: 62 HDLFGENYRQYMLELNASDERGINVIREKVKEFARSRTPPEIPFKIVLLDEADNMTSDAQ 121
Query: 220 NALRRKL---------------------PV---------TPDGKKAII------------ 237
ALRR + P+ P K+ +I
Sbjct: 122 QALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGV 181
Query: 238 -----------DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
++S+GDMRK +N+LQ+A ++ +V D VY VG E+ +L
Sbjct: 182 DYEEEALDAIYEISEGDMRKAINVLQAA--SYLGKVTVDAVYRVVGMAKPREVREML 236
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 456 IQEIKIEKGLALTDILTEI--SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 513
+++I IE G++ D+ +I L L++PE + V + ++ YRL G+ + IQLS
Sbjct: 251 LRKIMIEYGMSGEDVARQIHRELFSTELKMPEELRVLAADYLGEVHYRLVEGSDDDIQLS 310
Query: 514 ALIAAFNSARDKLE 527
A +A KLE
Sbjct: 311 AFLAWLTMMSRKLE 324
>gi|448543893|ref|ZP_21625354.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|448551053|ref|ZP_21629195.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|448558572|ref|ZP_21633129.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
gi|445706035|gb|ELZ57922.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|445710609|gb|ELZ62407.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|445712324|gb|ELZ64106.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
Length = 327
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 99/148 (66%), Gaps = 2/148 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ +I+ ++LPHLLF GP G GKTT+ A AR +Y + LELNASD+RGI
Sbjct: 34 DIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD-DWRGNFLELNASDERGI 92
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + + Y++I LDEAD++TNDAQ+ALRR +E+F+ N RF + CNY
Sbjct: 93 DVVRDRIKNFARS-SFGGHDYRVIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYS 151
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI IQSRC FRF PL + ++
Sbjct: 152 SKIIDPIQSRCAVFRFSPLGDDAVAEQV 179
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 36/185 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL + ++ + E + VT DG
Sbjct: 135 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDIEVTEDG 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
A++ + GDMR+ +N LQ+AAT + V+E+ ++ + + RP ++E+V
Sbjct: 195 LDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYMITST----ARPEDIEEMVRAAID 249
Query: 116 -------------------SHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
+ DII + ++ E V L+ ++ + +YR++ G
Sbjct: 250 GEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDERDAVRLMERIGEADYRISEGA 309
Query: 150 SEKIQ 154
+E++Q
Sbjct: 310 NEQVQ 314
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
+EKYRP T D++ DI+ + ++ D+ + L AG + +A+
Sbjct: 18 IEKYRPQTFDDVYGQDDIVERLR--------SYIERDDLPHLLFAGPAGVGKTTSATAIA 69
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
A + LELNASD+RGI +VRD+I FA + + Y++I LDEAD++TNDAQ
Sbjct: 70 RAIYGDDWRGNFLELNASDERGIDVVRDRIKNFARS-SFGGHDYRVIFLDEADSLTNDAQ 128
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDI 188
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
VT DG A++ + GDMR+ +N LQ+AAT + V+E+ VY
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVY 229
>gi|448622422|ref|ZP_21669116.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
gi|445754504|gb|EMA05909.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
Length = 327
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 99/148 (66%), Gaps = 2/148 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ +I+ ++LPHLLF GP G GKTT+ A AR +Y + LELNASD+RGI
Sbjct: 34 DIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD-DWRGNFLELNASDERGI 92
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + + Y++I LDEAD++TNDAQ+ALRR +E+F+ N RF + CNY
Sbjct: 93 DVVRDRIKNFARS-SFGGHDYRVIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYS 151
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI IQSRC FRF PL + ++
Sbjct: 152 SKIIDPIQSRCAVFRFSPLGDDAVAEQV 179
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 36/185 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL + ++ + E + VT DG
Sbjct: 135 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDIEVTEDG 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
A++ + GDMR+ +N LQ+AAT + V+E+ ++ + + RP ++E+V
Sbjct: 195 LDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYMITST----ARPEDIEEMVRNAID 249
Query: 116 -------------------SHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
+ DII + ++ E V L+ ++ + +YR++ G
Sbjct: 250 GEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDEREAVRLMERIGEADYRISEGA 309
Query: 150 SEKIQ 154
+E++Q
Sbjct: 310 NEQVQ 314
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
+EKYRP T D++ DI+ + ++ D+ + L AG + +A+
Sbjct: 18 IEKYRPQTFDDVYGQDDIVERLR--------SYIERDDLPHLLFAGPAGVGKTTSATAIA 69
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
A + LELNASD+RGI +VRD+I FA + + Y++I LDEAD++TNDAQ
Sbjct: 70 RAIYGDDWRGNFLELNASDERGIDVVRDRIKNFARS-SFGGHDYRVIFLDEADSLTNDAQ 128
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDI 188
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
VT DG A++ + GDMR+ +N LQ+AAT + V+E+ VY
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVY 229
>gi|448582711|ref|ZP_21646215.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
gi|445732359|gb|ELZ83942.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
Length = 327
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 99/148 (66%), Gaps = 2/148 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ +I+ ++LPHLLF GP G GKTT+ A AR +Y + LELNASD+RGI
Sbjct: 34 DIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD-DWRGNFLELNASDERGI 92
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + + Y++I LDEAD++TNDAQ+ALRR +E+F+ N RF + CNY
Sbjct: 93 DVVRDRIKNFARS-SFGGHDYRVIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYS 151
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI IQSRC FRF PL + ++
Sbjct: 152 SKIIDPIQSRCAVFRFSPLGDDAVAEQV 179
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 36/185 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL + ++ + E + VT DG
Sbjct: 135 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDIEVTEDG 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
A++ + GDMR+ +N LQ+AAT + V+E+ ++ + + RP ++E+V
Sbjct: 195 LDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYMITST----ARPEDIEEMVRAAID 249
Query: 116 -------------------SHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
+ DII + ++ E V L+ ++ + +YR++ G
Sbjct: 250 GEFTTARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDEREAVRLMERIGEADYRISEGA 309
Query: 150 SEKIQ 154
+E++Q
Sbjct: 310 NEQVQ 314
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
+EKYRP T D++ DI+ + ++ D+ + L AG + +A+
Sbjct: 18 IEKYRPQTFDDVYGQDDIVERLR--------SYIERDDLPHLLFAGPAGVGKTTSATAIA 69
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
A + LELNASD+RGI +VRD+I FA + + Y++I LDEAD++TNDAQ
Sbjct: 70 RAIYGDDWRGNFLELNASDERGIDVVRDRIKNFARS-SFGGHDYRVIFLDEADSLTNDAQ 128
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDI 188
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
VT DG A++ + GDMR+ +N LQ+AAT + V+E+ VY
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVY 229
>gi|448560589|ref|ZP_21634037.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
gi|445722239|gb|ELZ73902.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
Length = 327
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 99/148 (66%), Gaps = 2/148 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ +I+ ++LPHLLF GP G GKTT+ A AR +Y + LELNASD+RGI
Sbjct: 34 DIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD-DWRGNFLELNASDERGI 92
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + + Y++I LDEAD++TNDAQ+ALRR +E+F+ N RF + CNY
Sbjct: 93 DVVRDRIKNFARS-SFGGHDYRVIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYS 151
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI IQSRC FRF PL + ++
Sbjct: 152 SKIIDPIQSRCAVFRFSPLGDDAVAEQV 179
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 36/185 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL + ++ + E + VT DG
Sbjct: 135 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDIEVTEDG 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
A++ + GDMR+ +N LQ+AAT + V+E+ ++ + + RP ++E+V
Sbjct: 195 LDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYMITST----ARPEDIEEMVRAAID 249
Query: 116 -------------------SHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
+ DII + ++ E V L+ ++ + +YR++ G
Sbjct: 250 GEFTTARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLGEREAVRLMERIGEADYRISEGA 309
Query: 150 SEKIQ 154
+E++Q
Sbjct: 310 NEQVQ 314
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
+EKYRP T D++ DI+ + ++ D+ + L AG + +A+
Sbjct: 18 IEKYRPQTFDDVYGQDDIVERLR--------SYIERDDLPHLLFAGPAGVGKTTSATAIA 69
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
A + LELNASD+RGI +VRD+I FA + + Y++I LDEAD++TNDAQ
Sbjct: 70 RAIYGDDWRGNFLELNASDERGIDVVRDRIKNFARS-SFGGHDYRVIFLDEADSLTNDAQ 128
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDI 188
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
VT DG A++ + GDMR+ +N LQ+AAT + V+E+ VY
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVY 229
>gi|147918695|ref|YP_687582.1| replication factor C small subunit [Methanocella arvoryzae MRE50]
gi|121687726|sp|Q0W037.1|RFCS_UNCMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|110622978|emb|CAJ38256.1| replication factor C (clamp loader), small subunit [Methanocella
arvoryzae MRE50]
Length = 322
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 98/138 (71%), Gaps = 1/138 (0%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
++ LPHLLF GPPG GKT +A AR+LY + +++ +ELNASD+RGI +VR+ I
Sbjct: 32 YVKSGNLPHLLFSGPPGVGKTACAVALARELYGET-WHSNFIELNASDERGIDVVRNNIK 90
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
FA T + ++ +K+I LDEADA+T+DAQ+ALRR +E++ RF I CNY SKI IQ
Sbjct: 91 NFARTAPLGEAKFKIIFLDEADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQ 150
Query: 420 SRCTRFRFGPLDSSLIMS 437
SRC +RFGPL+++ I +
Sbjct: 151 SRCAVYRFGPLNATDITT 168
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 104/198 (52%), Gaps = 31/198 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E++ RF I CNY SKI IQSRC +RFGPL+++ I + + + + E + + DG
Sbjct: 126 MERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNEGLKIEKDG 185
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKY-------------- 106
A+I ++ GDMR+ +N LQSAAT A ++ D I+ + K
Sbjct: 186 MDALIYVARGDMRRAINALQSAATI-AKDITADVIYQTTSTAKPKEIEDMLKLALNGQFM 244
Query: 107 -RPSTLDEL-----VSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ LDEL +S DII I + E +LV LV ++ + ++RL G SE+I
Sbjct: 245 DSRNKLDELLITYGLSGTDIIDQIYRSMFELGLDEDVLVALVDRIGEADFRLTEGASERI 304
Query: 154 QLSALIAAF---NSARDK 168
Q+ AL+A F +AR K
Sbjct: 305 QIEALLAHFKMQGAARSK 322
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 126/284 (44%), Gaps = 82/284 (28%)
Query: 92 EDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE 151
ED I+T EKYRP L++++ HQ I L+ V K ++ + L +G
Sbjct: 3 EDEIWT------EKYRPRRLEDVIGHQQITRR-------LISYV-KSGNLPHLLFSGPPG 48
Query: 152 KIQLSALIAAFNSARDKL---EVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIIL 208
+ + +A + +ELNASD+RGI +VR+ I FA T + ++ +K+I L
Sbjct: 49 VGKTACAVALARELYGETWHSNFIELNASDERGIDVVRNNIKNFARTAPLGEAKFKIIFL 108
Query: 209 DEADAMTNDAQNALRR-------------------------------------------- 224
DEADA+T+DAQ+ALRR
Sbjct: 109 DEADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITT 168
Query: 225 ---------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPT 275
L + DG A+I ++ GDMR+ +N LQSAAT A ++ D +Y +
Sbjct: 169 GITRIAKNEGLKIEKDGMDALIYVARGDMRRAINALQSAATI-AKDITADVIYQTTSTAK 227
Query: 276 KTEITNILRWLLNESMDLCYKINRFID-ENELPHLLF-YGPPGT 317
EI ++L+ LN +F+D N+L LL YG GT
Sbjct: 228 PKEIEDMLKLALN---------GQFMDSRNKLDELLITYGLSGT 262
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
K+ E+ I GL+ TDI+ +I + L + E +LV LV ++ + ++RL G SE+IQ+ A
Sbjct: 249 KLDELLITYGLSGTDIIDQIYRSMFELGLDEDVLVALVDRIGEADFRLTEGASERIQIEA 308
Query: 515 LIAAF---NSARDK 525
L+A F +AR K
Sbjct: 309 LLAHFKMQGAARSK 322
>gi|448606584|ref|ZP_21659010.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738792|gb|ELZ90304.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
Length = 327
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 99/148 (66%), Gaps = 2/148 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ +I+ ++LPHLLF GP G GKTT+ A AR +Y + LELNASD+RGI
Sbjct: 34 DIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD-DWRGNFLELNASDERGI 92
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + + Y++I LDEAD++TNDAQ+ALRR +E+F+ N RF + CNY
Sbjct: 93 DVVRDRIKNFARS-SFGGHDYRVIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYS 151
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI IQSRC FRF PL + ++
Sbjct: 152 SKIIDPIQSRCAVFRFSPLGDDAVAEQV 179
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 36/185 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL + ++ + E + VT DG
Sbjct: 135 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEGIEVTEDG 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
A++ + GDMR+ +N LQ+AAT + V+E+ ++ + + RP ++ +V
Sbjct: 195 LDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYMITST----ARPEDIERMVRNAID 249
Query: 116 -------------------SHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
+ DII + ++ E V L+ ++ + +YR++ G
Sbjct: 250 GEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDEREAVRLMERIGEADYRISEGA 309
Query: 150 SEKIQ 154
+E++Q
Sbjct: 310 NEQVQ 314
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
+EKYRP T D++ DI+ + ++ D+ + L AG + +A+
Sbjct: 18 IEKYRPQTFDDVYGQDDIVERLR--------SYIERDDLPHLLFAGPAGVGKTTSATAIA 69
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
A + LELNASD+RGI +VRD+I FA + + Y++I LDEAD++TNDAQ
Sbjct: 70 RAIYGDDWRGNFLELNASDERGIDVVRDRIKNFARS-SFGGHDYRVIFLDEADSLTNDAQ 128
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEGI 188
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
VT DG A++ + GDMR+ +N LQ+AAT + V+E+ VY
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVY 229
>gi|347524285|ref|YP_004781855.1| Replication factor C [Pyrolobus fumarii 1A]
gi|343461167|gb|AEM39603.1| Replication factor C [Pyrolobus fumarii 1A]
Length = 327
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 102/150 (68%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +F++E +PHLLF GPPGTGKTT A A L+ + + +LELNASD+RGI
Sbjct: 27 EIVRRLKKFVEEKNMPHLLFVGPPGTGKTTAAHALAHDLFGE-NYRQYMLELNASDERGI 85
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+R ++ +FA ++T +K+++LDEAD MT DAQ ALRR++E +T + RF +I NY
Sbjct: 86 ETIRTKVKEFARSRTPPGIPFKIVLLDEADNMTADAQQALRRLMEMYTASTRFILIANYP 145
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI IQSRC FRF PL +++RL +
Sbjct: 146 SKIIEPIQSRCAIFRFTPLKKEDVVARLKW 175
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T + RF +I NY SKI IQSRC FRF PL +++RL ++ EQE +
Sbjct: 129 MEMYTASTRFILIANYPSKIIEPIQSRCAIFRFTPLKKEDVVARLKWICEQEGCQYDEEA 188
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNEDTIFTL---LVSR 102
+ I ++S+GDMR+ +NILQ+AA AH E+ E L
Sbjct: 189 LETIYEISEGDMRRAINILQAAAALGKVTVEAVYKVVGLAHPKEIREIIKLALDGRFTDA 248
Query: 103 VEKYRPSTLDELVSHQDIISTI---------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+K R ++ +S D+I I ++P+ + V + +I++RL G ++I
Sbjct: 249 RKKLRELMINYGLSGTDVIKQIHKEVFGPELKLPDEVRVLIADYAGEIQFRLVEGADDEI 308
Query: 154 QLSALIA 160
QL+A +A
Sbjct: 309 QLNAFLA 315
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 121/271 (44%), Gaps = 75/271 (27%)
Query: 104 EKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP TLDE+V+ ++I+ ++ + E M + + GT + AL
Sbjct: 12 EKYRPKTLDEIVNQEEIVRRLKKFVEEK-------NMPHLLFVGPPGTGKTTAAHALAHD 64
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ +LELNASD+RGI +R ++ +FA ++T +K+++LDEAD MT DAQ A
Sbjct: 65 LFGENYRQYMLELNASDERGIETIRTKVKEFARSRTPPGIPFKIVLLDEADNMTADAQQA 124
Query: 222 LRRKL---------------------PV---------TPDGKKAII-------------- 237
LRR + P+ TP K+ ++
Sbjct: 125 LRRLMEMYTASTRFILIANYPSKIIEPIQSRCAIFRFTPLKKEDVVARLKWICEQEGCQY 184
Query: 238 ---------DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
++S+GDMR+ +NILQ+AA +V + VY VG EI I++ L+
Sbjct: 185 DEEALETIYEISEGDMRRAINILQAAAA--LGKVTVEAVYKVVGLAHPKEIREIIKLALD 242
Query: 289 ESMDLCYKINRFID-ENELPHLLF-YGPPGT 317
RF D +L L+ YG GT
Sbjct: 243 ---------GRFTDARKKLRELMINYGLSGT 264
>gi|119719185|ref|YP_919680.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
gi|150415673|sp|A1RWU7.1|RFCS_THEPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|119524305|gb|ABL77677.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
Length = 325
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ F+ +PHLLF GPPGTGKTT LA A LY ++ + LELNASD+RGI
Sbjct: 23 EIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYGES-WRDNTLELNASDERGI 81
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R +I +A T + +KL+ILDEAD MT DAQ ALRR +E F+ N RF +I NY
Sbjct: 82 DVIRSRIKDYARTLPIGDVPFKLVILDEADNMTGDAQQALRRTMELFSRNTRFILIANYA 141
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI IQSRC FRF PL RL +
Sbjct: 142 SKIIEPIQSRCAVFRFQPLPKGDAFQRLRW 171
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 39/194 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ N RF +I NY SKI IQSRC FRF PL RL ++ +QE + V
Sbjct: 125 MELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQEGITVDDGA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVS---- 116
+AI + S GD+RK +N LQ AA+A + V E+ ++ L RV +P + E++
Sbjct: 185 LEAIWEESQGDLRKAINTLQ-AASAISRNVTEEVVYAAL-GRV---KPKEVREMIESALK 239
Query: 117 ----------------------------HQDIIS--TIEIPESMLVDLVLKMSDIEYRLA 146
H++++S ++ + ++ L +L++ + + YR+
Sbjct: 240 GNLLEARDKLRLLLYNYGLSGVDIIRFIHREVLSQKSVRLDDATLAELLVLVGETNYRIV 299
Query: 147 AGTSEKIQLSALIA 160
G+ ++IQL AL++
Sbjct: 300 EGSDDEIQLMALLS 313
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 110/239 (46%), Gaps = 69/239 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP +LDE+V ++I+ ++ +K ++ + L AG + +A +A
Sbjct: 7 VEKYRPRSLDEIVDQEEIVKRLK--------EFVKNKNMPHLLFAGPPGTGKTTAALALA 58
Query: 163 N-----SARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
+ S RD LELNASD+RGI ++R +I +A T + +KL+ILDEAD MT D
Sbjct: 59 HDLYGESWRDN--TLELNASDERGIDVIRSRIKDYARTLPIGDVPFKLVILDEADNMTGD 116
Query: 218 AQNALRRKL---------------------PVT-----------PDGK------------ 233
AQ ALRR + P+ P G
Sbjct: 117 AQQALRRTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQE 176
Query: 234 ---------KAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
+AI + S GD+RK +N LQ AA+A + V E+ VY ++G E+ ++
Sbjct: 177 GITVDDGALEAIWEESQGDLRKAINTLQ-AASAISRNVTEEVVYAALGRVKPKEVREMI 234
>gi|448726685|ref|ZP_21709077.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
gi|445793731|gb|EMA44302.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
Length = 326
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 111/178 (62%), Gaps = 19/178 (10%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ ++ +++LPHLLF GP G GKTT+ +A AR++Y + LELNASD+RGI
Sbjct: 31 DITERLRSYVAQDDLPHLLFSGPAGVGKTTSAMAIAREIYGD-DWRDNFLELNASDERGI 89
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA T + Y++I LDEADA+T+DAQ+ALRR +E+F N RF + CNY
Sbjct: 90 DVVRDRIKNFART-SFGGYDYRVIFLDEADALTSDAQSALRRTMEQFANNTRFILSCNYS 148
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTD 469
++I IQSRC FRFGPL + + +++I E+G+ +TD
Sbjct: 149 NQIIDPIQSRCAVFRFGPLPETAVAE-----------------YVEQIAGEEGIEITD 189
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 93/184 (50%), Gaps = 36/184 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F N RF + CNY ++I IQSRC FRFGPL + + ++ + +E + +T DG
Sbjct: 132 MEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAVAEYVEQIAGEEGIEITDDG 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
A++ +DGDMRK +N LQ+AAT + V+E+ ++ + + RP ++ +V H
Sbjct: 192 VDALVYAADGDMRKAINGLQAAATT-GETVDEEAVYAITAA----ARPEEIETMVQHAIG 246
Query: 118 ---------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGT 149
D+I + E+ + V L+ ++ + +YR+ G
Sbjct: 247 GDFTAARAKLDDLLTDWGLGGGDVIDQLHRSAWSFELDDQATVRLLERVGETDYRITQGA 306
Query: 150 SEKI 153
+E++
Sbjct: 307 NERL 310
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 102/224 (45%), Gaps = 70/224 (31%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
+EKYRPS L E+ DI + + D+ + L +G + + ++ +A
Sbjct: 15 IEKYRPSALAEVAGQDDITERLR--------SYVAQDDLPHLLFSGPAGVGKTTSAMAIA 66
Query: 161 ---AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
+ RD LELNASD+RGI +VRD+I FA T + Y++I LDEADA+T+D
Sbjct: 67 REIYGDDWRDNF--LELNASDERGIDVVRDRIKNFART-SFGGYDYRVIFLDEADALTSD 123
Query: 218 AQNALRRK-----------------------------------LP--------------- 227
AQ+ALRR LP
Sbjct: 124 AQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAVAEYVEQIAGEE 183
Query: 228 ---VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
+T DG A++ +DGDMRK +N LQ+AAT + V+E+ VY
Sbjct: 184 GIEITDDGVDALVYAADGDMRKAINGLQAAATT-GETVDEEAVY 226
>gi|429216858|ref|YP_007174848.1| DNA polymerase III, subunit gamma/tau [Caldisphaera lagunensis DSM
15908]
gi|429133387|gb|AFZ70399.1| DNA polymerase III, gamma/tau subunit [Caldisphaera lagunensis DSM
15908]
Length = 333
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 108/159 (67%), Gaps = 2/159 (1%)
Query: 283 LRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLE 342
L+ ++N+ D+ ++ +F+ E +PHLLF GPPGTGKTT A A LY ++ + +LE
Sbjct: 26 LKDIINQQ-DITTRLMKFVQEKNMPHLLFAGPPGTGKTTAAHALAHDLYGES-YQQFMLE 83
Query: 343 LNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNV 402
LNASD+RGI +R+++ +FA +KT + +K+++LDEAD MT+DAQ ALRR++E ++ +
Sbjct: 84 LNASDERGIDTIREKVKEFARSKTPPEIPFKIVLLDEADNMTSDAQQALRRLMELYSAST 143
Query: 403 RFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
RF + NY SKI IQSRC FRF L ++ RL Y
Sbjct: 144 RFILAANYPSKIIDPIQSRCAFFRFTSLKKEDVIDRLKY 182
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 64/235 (27%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLK--MSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP TL ++++ QDI + L+ V + M + + GT + AL
Sbjct: 19 EKYRPRTLKDIINQQDITTR-------LMKFVQEKNMPHLLFAGPPGTGKTTAAHALAHD 71
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ +LELNASD+RGI +R+++ +FA +KT + +K+++LDEAD MT+DAQ A
Sbjct: 72 LYGESYQQFMLELNASDERGIDTIREKVKEFARSKTPPEIPFKIVLLDEADNMTSDAQQA 131
Query: 222 LRRKL---------------------PV---------TPDGKKAIID------------- 238
LRR + P+ T K+ +ID
Sbjct: 132 LRRLMELYSASTRFILAANYPSKIIDPIQSRCAFFRFTSLKKEDVIDRLKYIADKEGVDY 191
Query: 239 ----------LSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
+S+GDMRK +NILQ A+A+ +V + V+ VG +IT+++
Sbjct: 192 EEDALDIIFEISEGDMRKAINILQ--ASAYLGKVTSELVFKVVGMARPKDITDMI 244
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 98/198 (49%), Gaps = 31/198 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ + RF + NY SKI IQSRC FRF L ++ RL Y+ ++E V+ D
Sbjct: 136 MELYSASTRFILAANYPSKIIDPIQSRCAFFRFTSLKKEDVIDRLKYIADKEGVDYEEDA 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL--------------------V 100
I ++S+GDMRK +NILQ A+A+ +V + +F ++ +
Sbjct: 196 LDIIFEISEGDMRKAINILQ--ASAYLGKVTSELVFKVVGMARPKDITDMIETALKGNFI 253
Query: 101 SRVEKYRPSTLDELVSHQDIIST---------IEIPESMLVDLVLKMSDIEYRLAAGTSE 151
E R ++ +S +D++ I+I + + V + + +I +R++ G+ E
Sbjct: 254 EAREILRKVMIEYGLSGEDVVKQIHREIMGPDIKINDELRVLIADYLGEIHFRISEGSDE 313
Query: 152 KIQLSALIAAFNSARDKL 169
IQLSA +A + KL
Sbjct: 314 DIQLSAFLAWLSMMGKKL 331
>gi|189203731|ref|XP_001938201.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985300|gb|EDU50788.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 417
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 80/196 (40%), Positives = 117/196 (59%), Gaps = 37/196 (18%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
++R + + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR
Sbjct: 57 LSRTMQSSNLPHMLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVRQ 116
Query: 357 QIFQFA--------------------STKTMHK------SSYKLIILDEADAMTNDAQNA 390
++ FA TKT+ +K+I+LDEAD+MT DAQ+A
Sbjct: 117 KVKDFARQQLSVAPNYNIMVEDKSSGETKTVRYRDKYPCPPFKIIVLDEADSMTQDAQSA 176
Query: 391 LRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNII 450
LRR +E ++ RFC++CNY+++I + SRC++FRF LD + R+ DI+
Sbjct: 177 LRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAIKRV--SDIA----- 229
Query: 451 IWYIKIQEIKIEKGLA 466
K++ + +E G+A
Sbjct: 230 ----KLENVSLEDGVA 241
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 79/154 (51%), Gaps = 38/154 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL E V+ QD +TI+I + ++ S++ + L G + S ++A
Sbjct: 36 VEKYRPKTLSE-VTAQD--NTIQI-----LSRTMQSSNLPHMLFYGPPGTGKTSTILALA 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA--------------------STKTM 198
+ K VLELNASD+RGI IVR ++ FA TKT+
Sbjct: 88 KELYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPNYNIMVEDKSSGETKTV 147
Query: 199 HK------SSYKLIILDEADAMTNDAQNALRRKL 226
+K+I+LDEAD+MT DAQ+ALRR +
Sbjct: 148 RYRDKYPCPPFKIIVLDEADSMTQDAQSALRRTM 181
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 53/83 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF LD + R+ + + E V++
Sbjct: 181 METYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAIKRVSDIAKLENVSLEDGV 240
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++ ++DGD+RK + LQSAA
Sbjct: 241 AEELVRVADGDLRKAITFLQSAA 263
>gi|302348723|ref|YP_003816361.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
gi|302329135|gb|ADL19330.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
Length = 329
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 106/159 (66%), Gaps = 2/159 (1%)
Query: 283 LRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLE 342
L+ ++N+ ++ ++++F+ E +PHLLF GPPGTGKTT A A LY + +LE
Sbjct: 19 LKEIVNQK-EIVERLSKFVAEKNMPHLLFAGPPGTGKTTAAHALAHDLYGD-NYTQYMLE 76
Query: 343 LNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNV 402
LNASD+RGI +R+++ +FA +KT +K+++LDEAD MT DAQ ALRR++E ++ N
Sbjct: 77 LNASDERGIDTIREKVKEFARSKTPPDIPFKIVLLDEADNMTADAQQALRRLMELYSANT 136
Query: 403 RFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
RF + N+ SKI IQSRC FRF PL ++ RL Y
Sbjct: 137 RFILAANFPSKIIDPIQSRCAFFRFTPLGKDDVVGRLRY 175
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 39/193 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ N RF + N+ SKI IQSRC FRF PL ++ RL Y+ E+E V D
Sbjct: 129 MELYSANTRFILAANFPSKIIDPIQSRCAFFRFTPLGKDDVVGRLRYIAEKENVKYDEDA 188
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
+AI D+S+GDMRK +NILQ+AA+ +V+ D+++ + V RP + E+V
Sbjct: 189 LEAIYDISEGDMRKAINILQTAAS--LGKVDVDSVYKV----VGMARPKDIREMVEEALK 242
Query: 116 -------------------SHQDIISTI---------EIPESMLVDLVLKMSDIEYRLAA 147
S +D++ I +IPE + V + + +I YR+
Sbjct: 243 GDFTGARELLRKVMIEYGLSGEDVVRQIHRELFSNDLKIPEELRVMIADYLGEIHYRIVE 302
Query: 148 GTSEKIQLSALIA 160
G+ + IQLSA +A
Sbjct: 303 GSDDDIQLSAFLA 315
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 110/235 (46%), Gaps = 64/235 (27%)
Query: 104 EKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP +L E+V+ ++I+ + + E + L+ + GT + AL
Sbjct: 12 EKYRPRSLKEIVNQKEIVERLSKFVAEKNMPHLL-------FAGPPGTGKTTAAHALAHD 64
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+LELNASD+RGI +R+++ +FA +KT +K+++LDEAD MT DAQ A
Sbjct: 65 LYGDNYTQYMLELNASDERGIDTIREKVKEFARSKTPPDIPFKIVLLDEADNMTADAQQA 124
Query: 222 LRRKL---------------------PV---------TPDGK------------------ 233
LRR + P+ TP GK
Sbjct: 125 LRRLMELYSANTRFILAANFPSKIIDPIQSRCAFFRFTPLGKDDVVGRLRYIAEKENVKY 184
Query: 234 -----KAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
+AI D+S+GDMRK +NILQ+AA+ +V+ D+VY VG +I ++
Sbjct: 185 DEDALEAIYDISEGDMRKAINILQTAAS--LGKVDVDSVYKVVGMARPKDIREMV 237
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 456 IQEIKIEKGLALTDILTEI--SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 513
++++ IE GL+ D++ +I L + L+IPE + V + + +I YR+ G+ + IQLS
Sbjct: 252 LRKVMIEYGLSGEDVVRQIHRELFSNDLKIPEELRVMIADYLGEIHYRIVEGSDDDIQLS 311
Query: 514 ALIA 517
A +A
Sbjct: 312 AFLA 315
>gi|123493043|ref|XP_001326199.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121909110|gb|EAY13976.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 78/146 (53%), Positives = 101/146 (69%), Gaps = 4/146 (2%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
++ +LPHL+F+GPPGTGKT+ LA R L+ + F V ELNASD+RGI VR + +
Sbjct: 36 LETGDLPHLIFHGPPGTGKTSLALALCRSLFGE-DFRLRVKELNASDERGIDAVRSSVKE 94
Query: 361 FASTKTMH-KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
FAS + K +K++ILDEAD+MT+ AQNALRRIIE ++ RF IICNY+SKI I
Sbjct: 95 FASLAVPNGKIPFKIVILDEADSMTSAAQNALRRIIETYSAVTRFIIICNYVSKIIDPIL 154
Query: 420 SRCTRFRFGPLDSSLIMSRLD--YDD 443
SRC +FRF PLD I+ RL +DD
Sbjct: 155 SRCAKFRFKPLDRPAIIQRLHKIFDD 180
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 95/197 (48%), Gaps = 32/197 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RF IICNY+SKI I SRC +FRF PLD I+ RL + + + ++V +
Sbjct: 130 IETYSAVTRFIIICNYVSKIIDPILSRCAKFRFKPLDRPAIIQRLHKIFDDQNLSVDKEE 189
Query: 61 K-KAIIDLSDGDMRKVLNILQSAAT-------------------AHADEVNEDTIFTLLV 100
+ ++D+S GD+RK + QSAA+ A+ +V E+ T L
Sbjct: 190 TFETLVDISGGDLRKAITFAQSAASTCIETRKITSEIITSISGAANPSDV-ENYFHTCLS 248
Query: 101 SRVEKYRPSTLDELVSHQD-----------IISTIEIPESMLVDLVLKMSDIEYRLAAGT 149
+ + +T D + + D I+ + EIPE+ L+LK++ + +
Sbjct: 249 ADWDTIENATTDLVYAGYDISQIFEILISLIVKSNEIPEAKKPQLILKIAQADGSIINRA 308
Query: 150 SEKIQLSALIAAFNSAR 166
+ QL + A+ +++
Sbjct: 309 DPQFQLLGISASIRASK 325
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 12/126 (9%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
VEKYRP LD++V ++ + ++ L+ D+ + + GT + AL
Sbjct: 11 VEKYRPKNLDDIVQQEEAVKALKT--------TLETGDLPHLIFHGPPGTGKTSLALALC 62
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH-KSSYKLIILDEADAMTNDA 218
+ +L V ELNASD+RGI VR + +FAS + K +K++ILDEAD+MT+ A
Sbjct: 63 RSLFGEDFRLRVKELNASDERGIDAVRSSVKEFASLAVPNGKIPFKIVILDEADSMTSAA 122
Query: 219 QNALRR 224
QNALRR
Sbjct: 123 QNALRR 128
>gi|73669094|ref|YP_305109.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
gi|110287811|sp|Q46C63.1|RFCS_METBF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|72396256|gb|AAZ70529.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
Length = 334
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 97/146 (66%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++ LPHLLF GPPG GKT + ++ AR+++ + + ELNASD+RGI +VR
Sbjct: 32 RLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDLWRENFTELNASDERGIDVVR 91
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+I FA T M + +K+I LDEADA+T+DAQ+ALRR +E+F+ N RF + CNY S+I
Sbjct: 92 TKIKNFAKTAPMGGAEFKIIFLDEADALTSDAQSALRRTMERFSNNCRFILSCNYSSRII 151
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSRC FRF L I RL+Y
Sbjct: 152 EPIQSRCAVFRFRRLSDEAIRKRLEY 177
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 105/198 (53%), Gaps = 36/198 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF L I RL+Y+ + + +++T DG
Sbjct: 131 MERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQVLSITEDG 190
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE-VNEDTIFTLLVS------------------ 101
+A++ +S GDMRK +N LQ+AA ++ ++ TI+ +
Sbjct: 191 YEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTATANPEDIRNLIETALRGNF 250
Query: 102 RVEKYRPSTL--DELVSHQDIISTI-----EIPESMLVDLVLK----------MSDIEYR 144
RV + + L +E +S +DI+ I E+ M++DL L + +I++R
Sbjct: 251 RVARKELNRLLYEEGLSGEDIVGQIYRAISEMDNRMILDLGLSEKRIVELVDIIGEIDFR 310
Query: 145 LAAGTSEKIQLSALIAAF 162
L G +EKIQL AL+A F
Sbjct: 311 LTEGATEKIQLEALLAHF 328
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 120/265 (45%), Gaps = 71/265 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG------TSEKIQLS 156
+EKYRP LD++ ++ TIE +S + ++ + L +G T+ + ++
Sbjct: 12 IEKYRPVRLDQVAGQEE---TIERLKSYVA-----TKNLPHLLFSGPPGVGKTASAVSIA 63
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
I + R+ ELNASD+RGI +VR +I FA T M + +K+I LDEADA+T+
Sbjct: 64 REIFGEDLWRENF--TELNASDERGIDVVRTKIKNFAKTAPMGGAEFKIIFLDEADALTS 121
Query: 217 DAQNALRRKL-------------------------------------------------- 226
DAQ+ALRR +
Sbjct: 122 DAQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKD 181
Query: 227 ---PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADE-VNEDTVYNSVGYPTKTEITNI 282
+T DG +A++ +S GDMRK +N LQ+AA ++ ++ T+Y + +I N+
Sbjct: 182 QVLSITEDGYEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTATANPEDIRNL 241
Query: 283 LRWLLNESMDLCYK-INRFIDENEL 306
+ L + + K +NR + E L
Sbjct: 242 IETALRGNFRVARKELNRLLYEEGL 266
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 8/66 (12%)
Query: 462 EKGLALTDILTEI--------SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 513
E+GL+ DI+ +I + ++ L + E +V+LV + +I++RL G +EKIQL
Sbjct: 263 EEGLSGEDIVGQIYRAISEMDNRMILDLGLSEKRIVELVDIIGEIDFRLTEGATEKIQLE 322
Query: 514 ALIAAF 519
AL+A F
Sbjct: 323 ALLAHF 328
>gi|448737973|ref|ZP_21720004.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
gi|445802557|gb|EMA52861.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
Length = 326
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 71/144 (49%), Positives = 100/144 (69%), Gaps = 2/144 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ ++ +++LPHLLF GP G GKTT+ +A AR++Y + LELNASD+RGI
Sbjct: 31 DITERLRSYVAQDDLPHLLFSGPAGVGKTTSAMAIAREIYGD-DWRENFLELNASDERGI 89
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA T + Y++I LDEADA+T+DAQ+ALRR +E+F N RF + CNY
Sbjct: 90 DVVRDRIKNFART-SFGGYDYRVIFLDEADALTSDAQSALRRTMEQFANNTRFILSCNYS 148
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLI 435
++I IQSRC FRFGPL + +
Sbjct: 149 NQIIDPIQSRCAVFRFGPLPETAV 172
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 93/184 (50%), Gaps = 36/184 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F N RF + CNY ++I IQSRC FRFGPL + + ++ + +E + +T DG
Sbjct: 132 MEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAVAEYVERIAGEEGIEITDDG 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
A++ +DGDMRK +N LQ+AAT + V+E+ ++ + + RP ++ +V H
Sbjct: 192 VDALVYAADGDMRKAINGLQAAATT-GETVDEEAVYAITAA----ARPEQIETMVQHAIG 246
Query: 118 ---------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGT 149
D+I + E+ + V L+ ++ + +YR+ G
Sbjct: 247 GDFTAARAKLDDLLTDWGLGGGDVIDQLHRSAWSFELDDQATVRLLERVGETDYRITQGA 306
Query: 150 SEKI 153
+E++
Sbjct: 307 NERL 310
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 97/221 (43%), Gaps = 64/221 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRPS L E+ DI + + + L L+ AG + A+
Sbjct: 15 IEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGP-------AGVGKTTSAMAIAR 67
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELNASD+RGI +VRD+I FA T + Y++I LDEADA+T+DAQ+
Sbjct: 68 EIYGDDWRENFLELNASDERGIDVVRDRIKNFART-SFGGYDYRVIFLDEADALTSDAQS 126
Query: 221 ALRRK-----------------------------------LP------------------ 227
ALRR LP
Sbjct: 127 ALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAVAEYVERIAGEEGIE 186
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
+T DG A++ +DGDMRK +N LQ+AAT + V+E+ VY
Sbjct: 187 ITDDGVDALVYAADGDMRKAINGLQAAATT-GETVDEEAVY 226
>gi|424814736|ref|ZP_18239914.1| replication factor C small subunit [Candidatus Nanosalina sp.
J07AB43]
gi|339758352|gb|EGQ43609.1| replication factor C small subunit [Candidatus Nanosalina sp.
J07AB43]
Length = 317
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 148/285 (51%), Gaps = 65/285 (22%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
+++ F++E +PH+L+ GP GTGKTT+ +A A+ LY Q+N +E NASD+RGI +VR
Sbjct: 26 RLSAFVEEESIPHMLYAGPAGTGKTTSAVALAKDLYGD-QWNQNFMETNASDERGIDVVR 84
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
++I FA TK + ++ YK+I LDEADA+T DAQ ALRR +E+FT N RF + CNY SKI
Sbjct: 85 EKIKDFARTKPI-EAEYKIIFLDEADALTPDAQQALRRTMEQFTENCRFILSCNYSSKII 143
Query: 416 PAIQSRCTRFRFGPLDSSLIMS----------------------RLDYDDISFFNIIIWY 453
IQSRC FR+ L+ + + R+ D+ ++
Sbjct: 144 DPIQSRCAVFRYNRLEEEDVKNYIQRIGESEGFKVSEDALEAVMRVSDGDLRRVTNVLQT 203
Query: 454 IKIQEIKIEK----GLA--------------------------LTDILTEISL------- 476
IQ +IE+ G+A L+D++ E L
Sbjct: 204 ASIQNSEIEEEDVYGVAASLRPEEITKILELALKERFMDARDQLSDLMIERGLDGQDVID 263
Query: 477 LVHR----LEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
+HR L+I E + ++ + + E+R++ G S IQ+ AL+A
Sbjct: 264 SIHREVYDLDISEQAKLTIIDNLGEFEFRISEGGSPDIQIEALLA 308
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 109/241 (45%), Gaps = 64/241 (26%)
Query: 104 EKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP TL E+V ++II + + E + ++ Y AGT + AL
Sbjct: 7 EKYRPDTLSEVVGQEEIIDRLSAFVEEESIPHML-------YAGPAGTGKTTSAVALAKD 59
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ +E NASD+RGI +VR++I FA TK + ++ YK+I LDEADA+T DAQ A
Sbjct: 60 LYGDQWNQNFMETNASDERGIDVVREKIKDFARTKPI-EAEYKIIFLDEADALTPDAQQA 118
Query: 222 LRRKLP-----------------------------------------------------V 228
LRR + V
Sbjct: 119 LRRTMEQFTENCRFILSCNYSSKIIDPIQSRCAVFRYNRLEEEDVKNYIQRIGESEGFKV 178
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
+ D +A++ +SDGD+R+V N+LQ+A+ ++ E+ E+ VY EIT IL L
Sbjct: 179 SEDALEAVMRVSDGDLRRVTNVLQTASIQNS-EIEEEDVYGVAASLRPEEITKILELALK 237
Query: 289 E 289
E
Sbjct: 238 E 238
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 99/191 (51%), Gaps = 36/191 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+FT N RF + CNY SKI IQSRC FR+ L+ + + + + E E V+ D
Sbjct: 123 MEQFTENCRFILSCNYSSKIIDPIQSRCAVFRYNRLEEEDVKNYIQRIGESEGFKVSEDA 182
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTL--------- 111
+A++ +SDGD+R+V N+LQ+A+ ++ E+ E+ ++ + S RP +
Sbjct: 183 LEAVMRVSDGDLRRVTNVLQTASIQNS-EIEEEDVYGVAAS----LRPEEITKILELALK 237
Query: 112 -------DEL--------VSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
D+L + QD+I +I +I E + ++ + + E+R++ G
Sbjct: 238 ERFMDARDQLSDLMIERGLDGQDVIDSIHREVYDLDISEQAKLTIIDNLGEFEFRISEGG 297
Query: 150 SEKIQLSALIA 160
S IQ+ AL+A
Sbjct: 298 SPDIQIEALLA 308
>gi|448445134|ref|ZP_21590189.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
gi|445685440|gb|ELZ37794.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
Length = 328
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 100/147 (68%), Gaps = 2/147 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +I+++++PHLLF GP G GKTT A AR++Y + + LELNASD RGI
Sbjct: 35 EIVERLQSYIEQDDIPHLLFSGPAGVGKTTAATAIARQVYGEDNWRGNFLELNASDQRGI 94
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA ++ ++++ LDEAD++T+DAQ+ALRR +E+F+ N RF + CNY
Sbjct: 95 DVVRDRIKGFA--RSSFGGDFRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYS 152
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSR 438
SKI IQSRC FRF PL + ++
Sbjct: 153 SKIIDPIQSRCAVFRFSPLSDEAVAAQ 179
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 28/181 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL + ++ + E + VT +G
Sbjct: 136 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVAAQTREIAAAEGIEVTDEG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLV-SRVEKYRP----------- 108
A++ +DGDMR+ +N LQ+AAT D V+E+ ++ + +R E+
Sbjct: 196 VDALVYAADGDMRRAINSLQAAATT-GDVVDEEAVYAITATARPEEIESMVTNALEGDFS 254
Query: 109 ---STLDELVSH-----QDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+TLD L++ D+I + ++ E V L+ ++ + +YR+A G +E++
Sbjct: 255 RARATLDTLLTETGMAGGDVIDQLHRSVWEFDLSEREAVALMERIGEADYRIAEGANEQV 314
Query: 154 Q 154
Q
Sbjct: 315 Q 315
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 119/265 (44%), Gaps = 83/265 (31%)
Query: 80 QSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMS 139
Q+AATA E+ +EKYRP +LD++ ++I+ ++ ++
Sbjct: 7 QTAATATGREI-----------WIEKYRPQSLDDIHGQEEIVERLQ--------SYIEQD 47
Query: 140 DIEYRLAAGTSEKIQLSALIA----AFNSARDKLEVLELNASDDRGIGIVRDQIFQFAST 195
DI + L +G + + +A A + + LELNASD RGI +VRD+I FA
Sbjct: 48 DIPHLLFSGPAGVGKTTAATAIARQVYGEDNWRGNFLELNASDQRGIDVVRDRIKGFA-- 105
Query: 196 KTMHKSSYKLIILDEADAMTNDAQNALRRKL----------------------------- 226
++ ++++ LDEAD++T+DAQ+ALRR +
Sbjct: 106 RSSFGGDFRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAV 165
Query: 227 ------------------------PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEV 262
VT +G A++ +DGDMR+ +N LQ+AAT D V
Sbjct: 166 FRFSPLSDEAVAAQTREIAAAEGIEVTDEGVDALVYAADGDMRRAINSLQAAATT-GDVV 224
Query: 263 NEDTVY--NSVGYPTKTE--ITNIL 283
+E+ VY + P + E +TN L
Sbjct: 225 DEEAVYAITATARPEEIESMVTNAL 249
>gi|330834115|ref|YP_004408843.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
gi|329566254|gb|AEB94359.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
Length = 325
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/149 (48%), Positives = 98/149 (65%), Gaps = 1/149 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ RF+ E +PHLLF GPPGTGKTT+ LA LY + ++ LELNASD+ GI
Sbjct: 23 DIVDRLKRFVKERNMPHLLFAGPPGTGKTTSALALVHDLYGE-NYDQFFLELNASDENGI 81
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ FA T T +K ++LDEAD MT+DAQ ALRR +E +T + RF + CNYL
Sbjct: 82 NVIRTKVKDFARTVTPGNVPFKTVLLDEADNMTSDAQQALRRTMELYTESTRFILACNYL 141
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
SKI IQSR FRF PL ++ RL+
Sbjct: 142 SKIIDPIQSRTALFRFYPLKKEDVILRLE 170
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T + RF + CNYLSKI IQSR FRF PL ++ RL+ ++++EKV
Sbjct: 125 MELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVILRLENILKEEKVQYDVKS 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNEDTIFTL------- 98
+ + D++ GDMRK +N+LQ+AA A E+ E L
Sbjct: 185 LEVVYDVTGGDMRKAINVLQAAAAYGKVTTDSVLKVLGLAQPKEIREMVKLALQGKFLDS 244
Query: 99 ---LVSRVEKYRPSTLDELVS-HQDIIST-IEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
L+S + Y S D + H+DI S +IPE + V + + ++E+R+ G ++I
Sbjct: 245 RSKLMSLIIDYGLSGEDIVKQVHRDIFSNEYQIPEELRVLMSDYLGEVEFRIIEGADDEI 304
Query: 154 QLSALIA 160
QLSA++A
Sbjct: 305 QLSAMLA 311
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 102/240 (42%), Gaps = 64/240 (26%)
Query: 104 EKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP TLD++V+ +DI+ ++ + E M + + GT + AL+
Sbjct: 8 EKYRPRTLDDIVNQKDIVDRLKRFVKER-------NMPHLLFAGPPGTGKTTSALALVHD 60
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
LELNASD+ GI ++R ++ FA T T +K ++LDEAD MT+DAQ A
Sbjct: 61 LYGENYDQFFLELNASDENGINVIRTKVKDFARTVTPGNVPFKTVLLDEADNMTSDAQQA 120
Query: 222 LRRKLPVTPDGKKAII-------------------------------------------- 237
LRR + + + + I+
Sbjct: 121 LRRTMELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVILRLENILKEEKVQY 180
Query: 238 ---------DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
D++ GDMRK +N+LQ+AA +V D+V +G EI +++ L
Sbjct: 181 DVKSLEVVYDVTGGDMRKAINVLQAAAAYG--KVTTDSVLKVLGLAQPKEIREMVKLALQ 238
>gi|123482551|ref|XP_001323818.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121906690|gb|EAY11595.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/140 (55%), Positives = 98/140 (70%), Gaps = 2/140 (1%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
++ +LPHL+F+GPPGTGKT+ LA R L+ F V ELNASD+RGI VR I +
Sbjct: 36 LETGDLPHLIFHGPPGTGKTSLALALCRSLFGD-DFRLRVKELNASDERGIDAVRSSIKE 94
Query: 361 FASTKTMH-KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
FAS + K +K++ILDEAD+MT+ AQNALRRIIE +++ RF IICNY+SKI I
Sbjct: 95 FASLAVPNGKIPFKIVILDEADSMTSAAQNALRRIIETYSSVTRFIIICNYVSKIIDPIL 154
Query: 420 SRCTRFRFGPLDSSLIMSRL 439
SRC +FRF PLD I+ RL
Sbjct: 155 SRCAKFRFKPLDRPAIIERL 174
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 117/285 (41%), Gaps = 87/285 (30%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
VEKYRP LD++V ++ + ++ L+ D+ + + GT + AL
Sbjct: 11 VEKYRPKNLDDIVQQEEAVKALKT--------TLETGDLPHLIFHGPPGTGKTSLALALC 62
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH-KSSYKLIILDEADAMTNDA 218
+ +L V ELNASD+RGI VR I +FAS + K +K++ILDEAD+MT+ A
Sbjct: 63 RSLFGDDFRLRVKELNASDERGIDAVRSSIKEFASLAVPNGKIPFKIVILDEADSMTSAA 122
Query: 219 QNALRR------------------------------KLPVTPDGKKAIID---------- 238
QNALRR K P + AII+
Sbjct: 123 QNALRRIIETYSSVTRFIIICNYVSKIIDPILSRCAKFRFKPLDRPAIIERLHKIFEDQN 182
Query: 239 --------------LSDGDMRKVLNILQSAATAHA--DEVNEDTVYNSVGYPTKTEITNI 282
+S GD+RK + QSAA+ + ++ + + + G P ++ N
Sbjct: 183 LSVDSEDTYETLVNISGGDLRKAITFAQSAASTCSLTRKITSEIITSISGAPNPADVENY 242
Query: 283 LRWLL--------NESMDLCYK-----------INRFIDENELPH 308
+ L N ++DL Y IN + NE+P
Sbjct: 243 FKTCLSADWDTIENATIDLVYAGYDIGQIFEILINLIVKTNEIPE 287
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 30/169 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNV-TPD 59
IE +++ RF IICNY+SKI I SRC +FRF PLD I+ RL + E + ++V + D
Sbjct: 130 IETYSSVTRFIIICNYVSKIIDPILSRCAKFRFKPLDRPAIIERLHKIFEDQNLSVDSED 189
Query: 60 GKKAIIDLSDGDMRKVLNILQSAA--------------TAHADEVN----EDTIFTLLVS 101
+ ++++S GD+RK + QSAA T+ + N E+ T L +
Sbjct: 190 TYETLVNISGGDLRKAITFAQSAASTCSLTRKITSEIITSISGAPNPADVENYFKTCLSA 249
Query: 102 RVEKYRPSTLDELVSHQD-----------IISTIEIPESMLVDLVLKMS 139
+ +T+D + + D I+ T EIPE+ +L+LK++
Sbjct: 250 DWDTIENATIDLVYAGYDIGQIFEILINLIVKTNEIPEAKKPELILKIA 298
>gi|346471367|gb|AEO35528.1| hypothetical protein [Amblyomma maculatum]
Length = 358
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/143 (52%), Positives = 102/143 (71%), Gaps = 10/143 (6%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LP+LLFYGPPGTGKT+TILA AR+L+ + + +LELNASD+RGI +VR++I F S
Sbjct: 64 DLPNLLFYGPPGTGKTSTILALARELFGD-MYKSRILELNASDERGIQVVREKIKTF-SQ 121
Query: 365 KTMHK--------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
T H +K++ILDEAD+MT AQ ALRR +EK T + RFC+ICNY+S+I
Sbjct: 122 LTAHAVGPDGKPCPPFKIVILDEADSMTASAQAALRRTMEKETKSTRFCLICNYISRIID 181
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
+ SRC++FRF PL +++ RL
Sbjct: 182 PLTSRCSKFRFKPLPKEVLLERL 204
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 53/89 (59%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK T + RFC+ICNY+S+I + SRC++FRF PL +++ RL + E V +
Sbjct: 160 MEKETKSTRFCLICNYISRIIDPLTSRCSKFRFKPLPKEVLLERLRSICTAEGVQCEDEV 219
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE 89
++D +GDMR+ + + QS + DE
Sbjct: 220 LDFLMDACEGDMRRAITLFQSVSRLKCDE 248
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 72/132 (54%), Gaps = 14/132 (10%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP T+D+ V+HQD + ++ DL ++ + GT + + AL
Sbjct: 35 VEKYRPKTVDD-VAHQDEVVSVLKKSLQGADL----PNLLFYGPPGTGKTSTILALAREL 89
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK--------SSYKLIILDEADAM 214
K +LELNASD+RGI +VR++I F S T H +K++ILDEAD+M
Sbjct: 90 FGDMYKSRILELNASDERGIQVVREKIKTF-SQLTAHAVGPDGKPCPPFKIVILDEADSM 148
Query: 215 TNDAQNALRRKL 226
T AQ ALRR +
Sbjct: 149 TASAQAALRRTM 160
>gi|452979410|gb|EME79172.1| hypothetical protein MYCFIDRAFT_79709 [Pseudocercospora fijiensis
CIRAD86]
Length = 405
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 116/187 (62%), Gaps = 26/187 (13%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + LPH+LFYGPPGTGKT+T+LA A++LY + VLELNASD+RGI IVR+
Sbjct: 58 LRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQLYGPELIKSRVLELNASDERGISIVRE 117
Query: 357 QIFQFASTKTMHKSS---------------YKLIILDEADAMTNDAQNALRRIIEKFTTN 401
++ FA + + + YK+I+LDEAD+MT DAQ+ALRR +E ++
Sbjct: 118 KVKDFARMQLSNPPAGPAGEEYRKKYPCPPYKIIVLDEADSMTQDAQSALRRTMETYSKI 177
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKI 461
RFC++CNY+++I + SRC++FRF LD R+ +DI+ +++ + +
Sbjct: 178 TRFCLVCNYVTRIIDPLASRCSKFRFKLLDEGNAGRRI--EDIA---------RLENVTL 226
Query: 462 EKGLALT 468
E+G+ T
Sbjct: 227 EEGVTNT 233
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 27/143 (18%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +LD++ + ++ + L+ +++ + L G + S ++A
Sbjct: 37 VEKYRPKSLDDVAAQDHTVTVLR--------RTLQSANLPHMLFYGPPGTGKTSTVLALA 88
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------------Y 203
+ K VLELNASD+RGI IVR+++ FA + + + Y
Sbjct: 89 KQLYGPELIKSRVLELNASDERGISIVREKVKDFARMQLSNPPAGPAGEEYRKKYPCPPY 148
Query: 204 KLIILDEADAMTNDAQNALRRKL 226
K+I+LDEAD+MT DAQ+ALRR +
Sbjct: 149 KIIVLDEADSMTQDAQSALRRTM 171
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF LD R++ + E V +
Sbjct: 171 METYSKITRFCLVCNYVTRIIDPLASRCSKFRFKLLDEGNAGRRIEDIARLENVTLEEGV 230
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
++ SDGD+RK + LQSAA
Sbjct: 231 TNTLLRCSDGDLRKAITFLQSAA 253
>gi|427779307|gb|JAA55105.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 392
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 99/142 (69%), Gaps = 8/142 (5%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LP+LLFYGPPGTGKT+TILA AR+L+ + + +LELNASD+RGI +VR++I F+
Sbjct: 98 DLPNLLFYGPPGTGKTSTILALARELFGD-MYKSRILELNASDERGIQVVREKIKTFSQL 156
Query: 365 KTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
YK++ILDEAD+MT AQ ALRR +EK T RFC+ICNY+S+I
Sbjct: 157 TASGTGPDGKPCPPYKIVILDEADSMTASAQAALRRTMEKETKTTRFCLICNYISRIIDP 216
Query: 418 IQSRCTRFRFGPLDSSLIMSRL 439
+ SRC++FRF PL +++ RL
Sbjct: 217 LTSRCSKFRFKPLPKDILLERL 238
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 71/134 (52%), Gaps = 12/134 (8%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
+ VEKYRP T+D+ V+HQD + ++ DL ++ + GT + + AL
Sbjct: 66 IPWVEKYRPKTVDD-VAHQDEVVSVLKKSLQGADL----PNLLFYGPPGTGKTSTILALA 120
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIILDEAD 212
K +LELNASD+RGI +VR++I F+ YK++ILDEAD
Sbjct: 121 RELFGDMYKSRILELNASDERGIQVVREKIKTFSQLTASGTGPDGKPCPPYKIVILDEAD 180
Query: 213 AMTNDAQNALRRKL 226
+MT AQ ALRR +
Sbjct: 181 SMTASAQAALRRTM 194
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK T RFC+ICNY+S+I + SRC++FRF PL +++ RL + E V
Sbjct: 194 MEKETKTTRFCLICNYISRIIDPLTSRCSKFRFKPLPKDILLERLRNICTAEAVQCDDQV 253
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE 89
++D +GDMR+ + + QS + +E
Sbjct: 254 LDFLMDACEGDMRRAITLFQSVSRLKCNE 282
>gi|169602695|ref|XP_001794769.1| hypothetical protein SNOG_04350 [Phaeosphaeria nodorum SN15]
gi|160706232|gb|EAT88110.2| hypothetical protein SNOG_04350 [Phaeosphaeria nodorum SN15]
Length = 1017
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 118/196 (60%), Gaps = 37/196 (18%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
++R + + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR
Sbjct: 663 LSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYGPELMKSRVLELNASDERGISIVRQ 722
Query: 357 QIFQFASTKTMHKSSY--------------------------KLIILDEADAMTNDAQNA 390
++ FA + +Y K+I+LDEAD+MT DAQ+A
Sbjct: 723 KVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDKYSCPPFKIIVLDEADSMTQDAQSA 782
Query: 391 LRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNII 450
LRR +E ++ RFC++CNY+++I + SRC++FRF LD + R+ DDI+
Sbjct: 783 LRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVRRV--DDIA----- 835
Query: 451 IWYIKIQEIKIEKGLA 466
K++++K++ G++
Sbjct: 836 ----KLEDVKLDAGVS 847
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 53/83 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF LD + R+D + + E V +
Sbjct: 787 METYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGV 846
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++ ++DGD+RK + LQSAA
Sbjct: 847 SEELVRVADGDLRKAITFLQSAA 869
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 77/160 (48%), Gaps = 39/160 (24%)
Query: 98 LLVSRVEKYRP-STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
+L R K P STL E V+ QD +TI+I + L+ S++ + L G + S
Sbjct: 636 MLGLRQPKCEPLSTLSE-VTAQD--NTIQI-----LSRTLQSSNLPHMLFYGPPGTGKTS 687
Query: 157 ALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSY--------- 203
++A + K VLELNASD+RGI IVR ++ FA + +Y
Sbjct: 688 TILALAKQLYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDG 747
Query: 204 -----------------KLIILDEADAMTNDAQNALRRKL 226
K+I+LDEAD+MT DAQ+ALRR +
Sbjct: 748 GEAKMVRYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTM 787
>gi|448664377|ref|ZP_21684180.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
gi|445775022|gb|EMA26036.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
Length = 325
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 97/139 (69%), Gaps = 2/139 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++ N+L H+LF GP GTGKTT A AR+LY + + LELNASD+RGI
Sbjct: 33 NIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGE-DWREHFLELNASDERGI 91
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA T + Y++I LDEADA+T+DAQ+ALRR +E+F+ NVRF + CNY
Sbjct: 92 DVVRDRIKNFART-SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYS 150
Query: 412 SKIPPAIQSRCTRFRFGPL 430
S+I IQSRC FRF PL
Sbjct: 151 SQIIDPIQSRCAVFRFSPL 169
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 28/189 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ NVRF + CNY S+I IQSRC FRF PL + + + +E + +T DG
Sbjct: 134 MEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEGIELTEDG 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-VSRVEKYRP----------- 108
A++ +DGDMRK +N LQ AA+ D V+E ++ + +R E+ R
Sbjct: 194 LDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFT 252
Query: 109 ---STLDELVSHQDI------------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+TLD L++ + I I +I + V ++ ++ + +YR+ G +E++
Sbjct: 253 ASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIEDEAAVRVLERIGETDYRITRGANERV 312
Query: 154 QLSALIAAF 162
QL A++A+
Sbjct: 313 QLEAMLASL 321
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 109/239 (45%), Gaps = 60/239 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP TLD+++ H++I+ ++ S +S + + AGT + +A+
Sbjct: 17 IEKYRPQTLDDVMGHENIVGRLKSYVSRN-----DLSHMLFSGPAGTGKTTCATAIAREL 71
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
+ LELNASD+RGI +VRD+I FA T + Y++I LDEADA+T+DAQ+AL
Sbjct: 72 YGEDWREHFLELNASDERGIDVVRDRIKNFART-SFGGVEYRIIFLDEADALTSDAQSAL 130
Query: 223 RRKL-----------------------------------------------------PVT 229
RR + +T
Sbjct: 131 RRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEGIELT 190
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
DG A++ +DGDMRK +N LQ AA+ D V+E VY EI +++ L+
Sbjct: 191 EDGLDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTMVQSALD 248
>gi|449017476|dbj|BAM80878.1| replication factor C subunit 4 [Cyanidioschyzon merolae strain 10D]
Length = 359
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 98/145 (67%), Gaps = 9/145 (6%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLY----TKAQFNAMVLELNASDDRGIGIVRDQIFQF 361
LPHLLFYGPPGTGKTTT LA R+L+ + VLELNASD+RGI +VR++I +F
Sbjct: 53 LPHLLFYGPPGTGKTTTALALCRELFQNITNRETLQNRVLELNASDERGIRVVREKIKRF 112
Query: 362 ASTKTMHK-----SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
A + +K++ILDEADA+T DAQ ALRR IE + RF +ICNYLS++ P
Sbjct: 113 AQSSIEESVDAQVPGFKIVILDEADAITADAQTALRRTIEVHSRTTRFVLICNYLSRVIP 172
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC +FRF L+ +++RL++
Sbjct: 173 PLASRCAKFRFKALEDGAVIARLEH 197
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVN-VTPD 59
IE + RF +ICNYLS++ P + SRC +FRF L+ +++RL+++ E + + P+
Sbjct: 151 IEVHSRTTRFVLICNYLSRVIPPLASRCAKFRFKALEDGAVIARLEHIARTEGMGPLPPE 210
Query: 60 GKKAIIDLSDGDMRKVLNILQSAA 83
+ + + GD+R+ +N+LQS A
Sbjct: 211 ASRLLAKAAAGDLRRAVNLLQSCA 234
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE-----IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 157
VEKYRP LD++ + I ++ S L + V + + + GT + A
Sbjct: 13 VEKYRPRRLDDVTQQHETIRALKQLLYGSGGSSLTEKVASLPHLLFYGPPGTGKTTTALA 72
Query: 158 LIAAFN---SARDKLE--VLELNASDDRGIGIVRDQIFQFASTKTMHK-----SSYKLII 207
L + R+ L+ VLELNASD+RGI +VR++I +FA + +K++I
Sbjct: 73 LCRELFQNITNRETLQNRVLELNASDERGIRVVREKIKRFAQSSIEESVDAQVPGFKIVI 132
Query: 208 LDEADAMTNDAQNALRRKLPV 228
LDEADA+T DAQ ALRR + V
Sbjct: 133 LDEADAITADAQTALRRTIEV 153
>gi|224106792|ref|XP_002333632.1| predicted protein [Populus trichocarpa]
gi|222837855|gb|EEE76220.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/141 (53%), Positives = 91/141 (64%), Gaps = 8/141 (5%)
Query: 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKT 366
PH+LFYGPPGTGKTTT LA A +LY + +MVLELNASDDRGI +V +I FAS
Sbjct: 36 PHMLFYGPPGTGKTTTALAIAHQLYGPELYKSMVLELNASDDRGINVVWTKIKDFASVAV 95
Query: 367 MHKSS--------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418
YK+ ILDEAD+MT DAQNALR +E F+ RF ICNY+S+I +
Sbjct: 96 GSGQCQGGYPCPPYKITILDEADSMTEDAQNALRLTMETFSKVTRFFFICNYISRIIEPL 155
Query: 419 QSRCTRFRFGPLDSSLIMSRL 439
SRC +FRF PL + SR+
Sbjct: 156 ASRCAKFRFKPLSEEITSSRI 176
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 53/98 (54%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ RF ICNY+S+I + SRC +FRF PL + SR+ ++ +E + + +
Sbjct: 132 METFSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEITSSRILHICNEEGLTLDGEA 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
+ +S GD+ + + LQ AA ++ + + ++
Sbjct: 192 LSTLSSISQGDLCRAITYLQGAARLFGSSISSEDLISV 229
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 38/61 (62%), Gaps = 8/61 (13%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSS--------YKLIILDEADAMTNDAQNAL 222
VLELNASDDRGI +V +I FAS YK+ ILDEAD+MT DAQNAL
Sbjct: 69 VLELNASDDRGINVVWTKIKDFASVAVGSGQCQGGYPCPPYKITILDEADSMTEDAQNAL 128
Query: 223 R 223
R
Sbjct: 129 R 129
>gi|392867577|gb|EAS29182.2| DNA replication factor C subunit Rfc2 [Coccidioides immitis RS]
Length = 322
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/145 (48%), Positives = 100/145 (68%), Gaps = 13/145 (8%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH 368
+LFYGPPGTGKT+TILA A+ L+ + + +LELNASD+RGI IVR++I FA + H
Sbjct: 1 MLFYGPPGTGKTSTILALAKSLFGPKLYRSRILELNASDERGINIVREKIKDFARIQLSH 60
Query: 369 KSS-------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+ +K+IILDEAD+MT DAQ+ALRR +E+F+ RFC++CNY+++I
Sbjct: 61 PPAHDSEYRKQYPCPPFKIIILDEADSMTQDAQSALRRTMERFSRITRFCLVCNYVTRII 120
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLD 440
+ SRC++FRF LD S +RL+
Sbjct: 121 DPLASRCSKFRFKSLDGSAAGTRLE 145
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ RFC++CNY+++I + SRC++FRF LD S +RL+ + + EK+ +
Sbjct: 100 MERFSRITRFCLVCNYVTRIIDPLASRCSKFRFKSLDGSAAGTRLEEIAKTEKLRLDNGV 159
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+R+ + +QSAA
Sbjct: 160 VDALIRCSEGDLRRAITYMQSAA 182
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 13/69 (18%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------------YKLIILDEADAMTND 217
+LELNASD+RGI IVR++I FA + H + +K+IILDEAD+MT D
Sbjct: 32 ILELNASDERGINIVREKIKDFARIQLSHPPAHDSEYRKQYPCPPFKIIILDEADSMTQD 91
Query: 218 AQNALRRKL 226
AQ+ALRR +
Sbjct: 92 AQSALRRTM 100
>gi|448467531|ref|ZP_21599543.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
gi|445812407|gb|EMA62401.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
Length = 327
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 100/147 (68%), Gaps = 2/147 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +I+++++PHLLF GP G GKTT A AR++Y + LELNASD RGI
Sbjct: 35 EIVERLQSYIEQDDIPHLLFSGPAGVGKTTASTAIARQVYGDDNWRGNFLELNASDQRGI 94
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA ++ ++++ LDEAD++T+DAQ+ALRR +E+F+ N RF + CNY
Sbjct: 95 DVVRDRIKGFA--RSSFGGDFRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYS 152
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSR 438
SKI IQSRC FRF PL + + ++
Sbjct: 153 SKIIDPIQSRCAVFRFSPLSDAAVAAQ 179
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 28/181 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL + + ++ + E + VT G
Sbjct: 136 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDAAVAAQTREIAAAEGIEVTDAG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLV-SRVEKYRP----------- 108
A++ +DGDMR+ +N LQ+AAT D V+E+ ++ + +R E+
Sbjct: 196 VDALVYAADGDMRRAINSLQAAATT-GDVVDEEAVYAITATARPEEIESMVTNALDGDFT 254
Query: 109 ---STLDELVSH-----QDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+TLD+L++ D+I + ++ E V L+ ++ + +YR+A G +E++
Sbjct: 255 RARATLDQLLTETGMAGGDVIDQLHRSVWEFDLSEREAVALMERIGEADYRIAEGANEQV 314
Query: 154 Q 154
Q
Sbjct: 315 Q 315
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 118/265 (44%), Gaps = 83/265 (31%)
Query: 80 QSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMS 139
Q+AATA E+ +EKYRP +LD++ ++I+ ++ ++
Sbjct: 7 QTAATATGREI-----------WIEKYRPQSLDDIHGQEEIVERLQ--------SYIEQD 47
Query: 140 DIEYRLAAGTSE--KIQLSALIA--AFNSARDKLEVLELNASDDRGIGIVRDQIFQFAST 195
DI + L +G + K S IA + + LELNASD RGI +VRD+I FA
Sbjct: 48 DIPHLLFSGPAGVGKTTASTAIARQVYGDDNWRGNFLELNASDQRGIDVVRDRIKGFA-- 105
Query: 196 KTMHKSSYKLIILDEADAMTNDAQNALRRKL----------------------------- 226
++ ++++ LDEAD++T+DAQ+ALRR +
Sbjct: 106 RSSFGGDFRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAV 165
Query: 227 ------------------------PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEV 262
VT G A++ +DGDMR+ +N LQ+AAT D V
Sbjct: 166 FRFSPLSDAAVAAQTREIAAAEGIEVTDAGVDALVYAADGDMRRAINSLQAAATT-GDVV 224
Query: 263 NEDTVY--NSVGYPTKTE--ITNIL 283
+E+ VY + P + E +TN L
Sbjct: 225 DEEAVYAITATARPEEIESMVTNAL 249
>gi|15791090|ref|NP_280914.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|169236842|ref|YP_001690042.1| replication factor C small subunit [Halobacterium salinarum R1]
gi|42559530|sp|Q9HN27.1|RFCS_HALSA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|226739141|sp|B0R7H7.1|RFCS_HALS3 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|10581691|gb|AAG20394.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|167727908|emb|CAP14696.1| replication factor C small subunit [Halobacterium salinarum R1]
Length = 322
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 101/148 (68%), Gaps = 2/148 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ ++D ++LPHLLF GP GTGKT + ++ A++LY + LELNASD+RGI
Sbjct: 29 DITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGD-DWQDNFLELNASDERGI 87
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + + +Y++I LDEADA+T+DAQ+ALRR +E+F+ N RF + CNY
Sbjct: 88 DVVRDRIKDFARS-SFGGHNYRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYS 146
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI IQSRC FRF L + + L
Sbjct: 147 SKIIDPIQSRCAVFRFAQLGDDAVAAHL 174
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 106/188 (56%), Gaps = 28/188 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF L + + L + E E + T DG
Sbjct: 130 MEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLEHTDDG 189
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLV-SRVEKYRP----------- 108
A++ +DGDMR+ +N LQ AA+A D VNE+T++ + +R E+
Sbjct: 190 IDALVYAADGDMRRAINALQ-AASATGDSVNEETVYAITATARPEEIETMVTEALGGDFA 248
Query: 109 ---STLDELVSHQ-----DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+TLD+L++++ DII + ++ E+ V L+ ++ + +YR+A G +E++
Sbjct: 249 AARATLDDLLTNRGLAGGDIIDQVHRSVWEFDVEEAAAVRLLDRLGEADYRIAEGANERV 308
Query: 154 QLSALIAA 161
QL AL+A+
Sbjct: 309 QLEALLAS 316
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 105/222 (47%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG--TSEKIQLSALIA 160
VEKYRP L+++V H DI ++ + D+ + L AG + K S IA
Sbjct: 13 VEKYRPERLEDVVGHPDITERLQS--------YVDRDDLPHLLFAGPAGTGKTASSVSIA 64
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D + LELNASD+RGI +VRD+I FA + + +Y++I LDEADA+T+DAQ
Sbjct: 65 KELYGDDWQDNFLELNASDERGIDVVRDRIKDFARS-SFGGHNYRVIFLDEADALTDDAQ 123
Query: 220 NALRRKL---------------------PV------------------------------ 228
+ALRR + P+
Sbjct: 124 SALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGL 183
Query: 229 --TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
T DG A++ +DGDMR+ +N LQ AA+A D VNE+TVY
Sbjct: 184 EHTDDGIDALVYAADGDMRRAINALQ-AASATGDSVNEETVY 224
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 37/56 (66%)
Query: 463 KGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 518
+GLA DI+ ++ V ++ E+ V L+ ++ + +YR+A G +E++QL AL+A+
Sbjct: 261 RGLAGGDIIDQVHRSVWEFDVEEAAAVRLLDRLGEADYRIAEGANERVQLEALLAS 316
>gi|20089555|ref|NP_615630.1| replication factor C small subunit [Methanosarcina acetivorans C2A]
gi|42559497|sp|Q8TSX5.1|RFCS_METAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|19914469|gb|AAM04110.1| replication factor C, small subunit [Methanosarcina acetivorans
C2A]
Length = 338
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 98/146 (67%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++ LPHLLF GPPG GKT + ++ AR+++ + + ELNASD+RGI IVR
Sbjct: 36 RLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDLWRENFTELNASDERGIDIVR 95
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
++I FA T + + +K+I LDEADA+T DAQ+ALRR +E+F++N RF + CNY SKI
Sbjct: 96 NKIKNFAKTAPIGGAPFKIIFLDEADALTADAQSALRRTMERFSSNCRFILSCNYSSKII 155
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSRC +RF L I RL+Y
Sbjct: 156 EPIQSRCAVYRFRRLSDEAIKERLEY 181
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 107/203 (52%), Gaps = 36/203 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F++N RF + CNY SKI IQSRC +RF L I RL+Y+ + +++T G
Sbjct: 135 MERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQGLSITEGG 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE-VNEDTIFTLLVS------------------ 101
+A+I ++ GDMRK +N LQ+AA D+ ++ +TI+ +
Sbjct: 195 YEALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPEEIKNLIETALRGNF 254
Query: 102 RVEKYRPSTL--DELVSHQDIISTI-----EIPESMLVDLVLKMSDI----------EYR 144
R+ + + L +E +S +DI+ I E+ M++DL L DI ++R
Sbjct: 255 RIARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMVLDLGLTERDIVALVDVIGETDFR 314
Query: 145 LAAGTSEKIQLSALIAAFNSARD 167
L G SEKIQL AL+A F +R+
Sbjct: 315 LTEGASEKIQLEALLAHFALSRE 337
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 121/265 (45%), Gaps = 71/265 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG------TSEKIQLS 156
+EKYRP L++ V+ QD TIE +S + ++ + L +G T+ + ++
Sbjct: 16 IEKYRPVRLNQ-VAGQD--ETIERLKSYVA-----TKNLPHLLFSGPPGVGKTASAVSIA 67
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
I + R+ ELNASD+RGI IVR++I FA T + + +K+I LDEADA+T
Sbjct: 68 REIFGEDLWRENF--TELNASDERGIDIVRNKIKNFAKTAPIGGAPFKIIFLDEADALTA 125
Query: 217 DAQNALRR---------------------------------------------------- 224
DAQ+ALRR
Sbjct: 126 DAQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGD 185
Query: 225 -KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADE-VNEDTVYNSVGYPTKTEITNI 282
L +T G +A+I ++ GDMRK +N LQ+AA D+ ++ +T+Y + EI N+
Sbjct: 186 QGLSITEGGYEALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPEEIKNL 245
Query: 283 LRWLLNESMDLCYK-INRFIDENEL 306
+ L + + K +NR + E L
Sbjct: 246 IETALRGNFRIARKELNRLLYEEGL 270
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 462 EKGLALTDILTEI--------SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 513
E+GL+ DI+ +I +L+V L + E +V LV + + ++RL G SEKIQL
Sbjct: 267 EEGLSGEDIVGQIYRVVSEMDNLMVLDLGLTERDIVALVDVIGETDFRLTEGASEKIQLE 326
Query: 514 ALIAAFNSARD 524
AL+A F +R+
Sbjct: 327 ALLAHFALSRE 337
>gi|17554730|ref|NP_498521.1| Protein RFC-4 [Caenorhabditis elegans]
gi|1703051|sp|P53016.1|RFC4_CAEEL RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|351049703|emb|CCD63405.1| Protein RFC-4 [Caenorhabditis elegans]
Length = 334
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 96/140 (68%), Gaps = 5/140 (3%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LPHLLFYGPPGTGKT+ LA R+L+ K F+ VL+LNASD+RGI +VR +I F+ +
Sbjct: 47 DLPHLLFYGPPGTGKTSAALAFCRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKS 106
Query: 365 KTMHKS-----SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
H K+IILDE DAMT +AQ A+RR+IE F+ RF +ICNY+S++ P +
Sbjct: 107 SLGHSHREDVLKLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVV 166
Query: 420 SRCTRFRFGPLDSSLIMSRL 439
SRC +FRF L + + + RL
Sbjct: 167 SRCAKFRFKSLPAEIQVQRL 186
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE F+ RF +ICNY+S++ P + SRC +FRF L + + + RL + + E ++ D
Sbjct: 142 IEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGTPMSDDE 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
K +++ S+GD+R+ + LQS A
Sbjct: 202 LKQVMEYSEGDLRRAVCTLQSLA 224
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 21/137 (15%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
+++ EKYRP TLD+ +++QD + T ++ L+ D+ + L G + SA
Sbjct: 14 VLTWTEKYRPKTLDD-IAYQDEVVT-------MLKGALQGRDLPHLLFYGPPGTGKTSAA 65
Query: 159 IA------AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS-----SYKLII 207
+A N D+ VL+LNASD+RGI +VR +I F+ + H K+II
Sbjct: 66 LAFCRQLFPKNIFHDR--VLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIII 123
Query: 208 LDEADAMTNDAQNALRR 224
LDE DAMT +AQ A+RR
Sbjct: 124 LDEVDAMTREAQAAMRR 140
>gi|448638308|ref|ZP_21676281.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|448655209|ref|ZP_21682061.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
gi|445763557|gb|EMA14744.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|445765658|gb|EMA16796.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
Length = 325
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 96/139 (69%), Gaps = 2/139 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++ N+L H+LF GP GTGKTT A AR+LY + LELNASD+RGI
Sbjct: 33 NIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGD-DWREHFLELNASDERGI 91
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA T + Y++I LDEADA+T+DAQ+ALRR +E+F+ NVRF + CNY
Sbjct: 92 DVVRDRIKNFART-SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYS 150
Query: 412 SKIPPAIQSRCTRFRFGPL 430
S+I IQSRC FRF PL
Sbjct: 151 SQIIDPIQSRCAVFRFSPL 169
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 28/189 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ NVRF + CNY S+I IQSRC FRF PL + + + +E + +T DG
Sbjct: 134 MEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDG 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-VSRVEKYRP----------- 108
A++ +DGDMRK +N LQ AA+ D V+E ++ + +R E+ R
Sbjct: 194 LDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFT 252
Query: 109 ---STLDELVSHQDI------------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+TLD L++ + I I +I + V ++ ++ + +YR+ G +E++
Sbjct: 253 ASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDEAAVRVLERIGETDYRITRGANERV 312
Query: 154 QLSALIAAF 162
QL A++A+
Sbjct: 313 QLEAMLASL 321
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 109/239 (45%), Gaps = 60/239 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP TLD+++ H++I+ ++ S +S + + AGT + +A+
Sbjct: 17 IEKYRPQTLDDVMGHENIVGRLKSYVSRN-----DLSHMLFSGPAGTGKTTCATAIAREL 71
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
+ LELNASD+RGI +VRD+I FA T + Y++I LDEADA+T+DAQ+AL
Sbjct: 72 YGDDWREHFLELNASDERGIDVVRDRIKNFART-SFGGVEYRIIFLDEADALTSDAQSAL 130
Query: 223 RRKL-----------------------------------------------------PVT 229
RR + +T
Sbjct: 131 RRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELT 190
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
DG A++ +DGDMRK +N LQ AA+ D V+E VY EI +++ L+
Sbjct: 191 EDGLDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTMVQSALD 248
>gi|125982841|ref|XP_001355186.1| GA20846 [Drosophila pseudoobscura pseudoobscura]
gi|54643499|gb|EAL32243.1| GA20846 [Drosophila pseudoobscura pseudoobscura]
Length = 354
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 106/152 (69%), Gaps = 8/152 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP++L YGPPGTGKT+TILA AR+++ + +LELNASD+RGI +VR
Sbjct: 55 LRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFGD-MYKDRILELNASDERGINVVRT 113
Query: 357 QIFQFASTKTMHK-------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+I F+ H +K+IILDEAD+MT+ AQ+ALRR +EK +++ RFC+ICN
Sbjct: 114 KIKNFSQLSASHVRPDGRPVPPFKIIILDEADSMTHAAQSALRRTMEKESSSTRFCLICN 173
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
Y+S+I I SRC++FRF PL I++RL +
Sbjct: 174 YVSRIIVPITSRCSKFRFKPLGEEKIIARLQH 205
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK +++ RFC+ICNY+S+I I SRC++FRF PL I++RL ++ E E V + PD
Sbjct: 159 MEKESSSTRFCLICNYVSRIIVPITSRCSKFRFKPLGEEKIIARLQHICELESVKIDPDA 218
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE--VNEDTIFTL 98
K I+ +S GD+R+ + LQS E +N +F +
Sbjct: 219 YKTIVKISGGDLRRAITTLQSCFRLQGSEHTINTADLFEM 258
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 125/297 (42%), Gaps = 89/297 (29%)
Query: 72 MRKVLNILQSAATAHADEVNEDTI--FTLLVSRVEKYRPSTLDELVSHQDIISTIEIPES 129
M+ L +S A++ +D+ T+ VEKYRPS++D++V ++++ +
Sbjct: 1 MQAFLKTGKSGASSGSDKPQGGTVERRKPPAPWVEKYRPSSVDDVVEQSEVVAVLR---- 56
Query: 130 MLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD------KLEVLELNASDDRGIG 183
++ +D+ L G + S ++AA AR K +LELNASD+RGI
Sbjct: 57 ----KCVEGADLPNMLLYGPPGTGKTSTILAA---ARQIFGDMYKDRILELNASDERGIN 109
Query: 184 IVRDQIFQFASTKTMHK-------SSYKLIILDEADAMTNDAQNALRRKL---------- 226
+VR +I F+ H +K+IILDEAD+MT+ AQ+ALRR +
Sbjct: 110 VVRTKIKNFSQLSASHVRPDGRPVPPFKIIILDEADSMTHAAQSALRRTMEKESSSTRFC 169
Query: 227 -----------PVT--------------------------------PDGKKAIIDLSDGD 243
P+T PD K I+ +S GD
Sbjct: 170 LICNYVSRIIVPITSRCSKFRFKPLGEEKIIARLQHICELESVKIDPDAYKTIVKISGGD 229
Query: 244 MRKVLNILQSAATAHADE--VNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYKIN 298
+R+ + LQS E +N ++ G I +LL++ MD+C N
Sbjct: 230 LRRAITTLQSCFRLQGSEHTINTADLFEMSGV--------IPDYLLDDFMDVCRSGN 278
>gi|57012999|sp|Q5UZE5.2|RFCS_HALMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 325
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 94/135 (69%), Gaps = 2/135 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++ N+L H+LF GP GTGKTT A AR+LY + LELNASD+RGI +VR
Sbjct: 37 RLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGD-DWREHFLELNASDERGIDVVR 95
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA T + Y++I LDEADA+T+DAQ+ALRR +E+F+ NVRF + CNY S+I
Sbjct: 96 DRIKNFART-SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQII 154
Query: 416 PAIQSRCTRFRFGPL 430
IQSRC FRF PL
Sbjct: 155 DPIQSRCAVFRFSPL 169
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 28/189 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ NVRF + CNY S+I IQSRC FRF PL + + + +E + +T DG
Sbjct: 134 MEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDG 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-VSRVEKYRP----------- 108
A++ +DGDMRK +N LQ AA+ D V+E ++ + +R E+ R
Sbjct: 194 LDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFT 252
Query: 109 ---STLDELVSHQDI------------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+TLD L++ + I I +I + V ++ ++ + +YR+ G +E++
Sbjct: 253 ASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDDAAVRVLERIGETDYRITRGANERV 312
Query: 154 QLSALIAAF 162
QL A++A+
Sbjct: 313 QLEAMLASL 321
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 109/239 (45%), Gaps = 60/239 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP TLD+++ H++I+ ++ S +S + + AGT + +A+
Sbjct: 17 IEKYRPQTLDDVMGHENIVGRLKSYVSRN-----DLSHMLFSGPAGTGKTTCATAIAREL 71
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
+ LELNASD+RGI +VRD+I FA T + Y++I LDEADA+T+DAQ+AL
Sbjct: 72 YGDDWREHFLELNASDERGIDVVRDRIKNFART-SFGGVEYRIIFLDEADALTSDAQSAL 130
Query: 223 RRKL-----------------------------------------------------PVT 229
RR + +T
Sbjct: 131 RRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELT 190
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
DG A++ +DGDMRK +N LQ AA+ D V+E VY EI +++ L+
Sbjct: 191 EDGLDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTMVQSALD 248
>gi|448683820|ref|ZP_21692440.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
gi|445783393|gb|EMA34222.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
Length = 325
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 96/139 (69%), Gaps = 2/139 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++ N+L H+LF GP GTGKTT A AR+LY + LELNASD+RGI
Sbjct: 33 NIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGD-DWREHFLELNASDERGI 91
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA T + Y++I LDEADA+T+DAQ+ALRR +E+F+ NVRF + CNY
Sbjct: 92 DVVRDRIKNFART-SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYS 150
Query: 412 SKIPPAIQSRCTRFRFGPL 430
S+I IQSRC FRF PL
Sbjct: 151 SQIIDPIQSRCAVFRFSPL 169
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 28/189 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ NVRF + CNY S+I IQSRC FRF PL + + + +E + +T DG
Sbjct: 134 MEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVADEIRNIAAEEDIELTEDG 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-VSRVEKYRP----------- 108
A++ +DGDMRK +N LQ AA+ D V+E ++ + +R E+ R
Sbjct: 194 LDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFT 252
Query: 109 ---STLDELVSHQDI------------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+TLD L++ + I I +I + V ++ ++ + +YR+ G +E++
Sbjct: 253 ASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDEAAVRVLERIGETDYRITRGANERV 312
Query: 154 QLSALIAAF 162
QL A++A+
Sbjct: 313 QLEAMLASL 321
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 109/239 (45%), Gaps = 60/239 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP TLD+++ H++I+ ++ S +S + + AGT + +A+
Sbjct: 17 IEKYRPQTLDDVMGHENIVGRLKSYVSRN-----DLSHMLFSGPAGTGKTTCATAIAREL 71
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
+ LELNASD+RGI +VRD+I FA T + Y++I LDEADA+T+DAQ+AL
Sbjct: 72 YGDDWREHFLELNASDERGIDVVRDRIKNFART-SFGGVEYRIIFLDEADALTSDAQSAL 130
Query: 223 RRKL-----------------------------------------------------PVT 229
RR + +T
Sbjct: 131 RRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVADEIRNIAAEEDIELT 190
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
DG A++ +DGDMRK +N LQ AA+ D V+E VY EI +++ L+
Sbjct: 191 EDGLDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTMVQSALD 248
>gi|448680330|ref|ZP_21690647.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
gi|445768774|gb|EMA19851.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
Length = 325
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 96/139 (69%), Gaps = 2/139 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++ N+L H+LF GP GTGKTT A AR+LY + LELNASD+RGI
Sbjct: 33 NIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGD-DWREHFLELNASDERGI 91
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA T + Y++I LDEADA+T+DAQ+ALRR +E+F+ NVRF + CNY
Sbjct: 92 DVVRDRIKNFART-SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYS 150
Query: 412 SKIPPAIQSRCTRFRFGPL 430
S+I IQSRC FRF PL
Sbjct: 151 SQIIDPIQSRCAVFRFSPL 169
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 28/189 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ NVRF + CNY S+I IQSRC FRF PL + + + +E + +T DG
Sbjct: 134 MEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEDIELTEDG 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-VSRVEKYRP----------- 108
A++ +DGDMRK +N LQ AA+ D V+E ++ + +R E+ R
Sbjct: 194 LDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFT 252
Query: 109 ---STLDELVSHQDI------------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+TLD L++ + I I +I + V ++ ++ + +YR+ G +E++
Sbjct: 253 ASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIGDDAAVRVLERIGETDYRITRGANERV 312
Query: 154 QLSALIAAF 162
QL A++A+
Sbjct: 313 QLEAMLASL 321
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 109/239 (45%), Gaps = 60/239 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP TLD+++ H++I+ ++ S +S + + AGT + +A+
Sbjct: 17 IEKYRPQTLDDVMGHENIVGRLKSYVSRN-----DLSHMLFSGPAGTGKTTCATAIAREL 71
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
+ LELNASD+RGI +VRD+I FA T + Y++I LDEADA+T+DAQ+AL
Sbjct: 72 YGDDWREHFLELNASDERGIDVVRDRIKNFART-SFGGVEYRIIFLDEADALTSDAQSAL 130
Query: 223 RRKL-----------------------------------------------------PVT 229
RR + +T
Sbjct: 131 RRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEDIELT 190
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
DG A++ +DGDMRK +N LQ AA+ D V+E VY EI +++ L+
Sbjct: 191 EDGLDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTMVQSALD 248
>gi|448633051|ref|ZP_21674049.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
gi|445752408|gb|EMA03832.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
Length = 325
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 96/139 (69%), Gaps = 2/139 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++ N+L H+LF GP GTGKTT A AR+LY + LELNASD+RGI
Sbjct: 33 NIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGD-DWREHFLELNASDERGI 91
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA T + Y++I LDEADA+T+DAQ+ALRR +E+F+ NVRF + CNY
Sbjct: 92 DVVRDRIKNFART-SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYS 150
Query: 412 SKIPPAIQSRCTRFRFGPL 430
S+I IQSRC FRF PL
Sbjct: 151 SQIIDPIQSRCAVFRFSPL 169
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 100/189 (52%), Gaps = 28/189 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ NVRF + CNY S+I IQSRC FRF PL + + + QE + +T DG
Sbjct: 134 MEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAQEDIELTEDG 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-VSRVEKYRP----------- 108
A++ +DGDMRK +N LQ AA+ D V+E ++ + +R E+ R
Sbjct: 194 LDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFT 252
Query: 109 ---STLDELVSHQDI------------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+TLD L++ + I I +I + V ++ ++ + +YR+ G +E++
Sbjct: 253 ASRATLDRLLTEEGIAGGDVIDQLHRSIWEFDIDDEAAVRVLERIGETDYRITRGANERV 312
Query: 154 QLSALIAAF 162
QL A++A+
Sbjct: 313 QLEAMLASL 321
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 109/239 (45%), Gaps = 60/239 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP TLD+++ H++I+ ++ S +S + + AGT + +A+
Sbjct: 17 IEKYRPQTLDDVMGHENIVGRLKSYVSRN-----DLSHMLFSGPAGTGKTTCATAIAREL 71
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
+ LELNASD+RGI +VRD+I FA T + Y++I LDEADA+T+DAQ+AL
Sbjct: 72 YGDDWREHFLELNASDERGIDVVRDRIKNFART-SFGGVEYRIIFLDEADALTSDAQSAL 130
Query: 223 RRKL-----------------------------------------------------PVT 229
RR + +T
Sbjct: 131 RRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAQEDIELT 190
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
DG A++ +DGDMRK +N LQ AA+ D V+E VY EI +++ L+
Sbjct: 191 EDGLDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTMVQSALD 248
>gi|170290625|ref|YP_001737441.1| DNA replication ATPase HolB small subunit [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174705|gb|ACB07758.1| ATPase involved in DNA replication HolB, small subunit [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 331
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/149 (50%), Positives = 94/149 (63%), Gaps = 1/149 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQF-NAMVLELNASDDRG 350
D+ + F+++ +PHLLF GP GTGKTTT LA A LY + A LELNASD+RG
Sbjct: 23 DIIRALKGFVEKRSMPHLLFAGPAGTGKTTTALALANDLYKSEELVAANYLELNASDERG 82
Query: 351 IGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
I +R +I FA T + +K+I LDEAD +T DAQ ALRRI+E ++ RF CNY
Sbjct: 83 IDTIRTKIKDFAKTAPFGEVPFKIIHLDEADNLTADAQQALRRIMEMYSATTRFIFACNY 142
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI IQSRC FRFGP+ I +RL
Sbjct: 143 SSKIIEPIQSRCAVFRFGPIPEEAIKNRL 171
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 106/208 (50%), Gaps = 36/208 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF CNY SKI IQSRC FRFGP+ I +RL + E+E + T DG
Sbjct: 127 MEMYSATTRFIFACNYSSKIIEPIQSRCAVFRFGPIPEEAIKNRLIMIAEREGLKYTEDG 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT----------------AHADEVN---EDTIFTLLVS 101
AII +++GD+RK +N+LQ+A+ AH +EV + +S
Sbjct: 187 ISAIIYVAEGDLRKAINLLQTASAMASTVDSKVVYRVAGLAHPEEVRAMINSALKGKFLS 246
Query: 102 RVEKYRPSTLDELVSHQDIISTI--EIPESMLVD------LVLKMSDIEYRLAAGTSEKI 153
E R ++ +S QD+I + EI S + L++ +S++++R+ G +
Sbjct: 247 AREALRNLMINYGMSAQDVIRQLNREIMASKSLSDKEKAMLMIFLSEVDFRVTEGAHGDV 306
Query: 154 QLSALIAAFNSARDKLEVLELNASDDRG 181
QL+A++A +++E+ S +RG
Sbjct: 307 QLAAMLA---------KLVEVGESHERG 325
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 109/247 (44%), Gaps = 71/247 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TLD++V DII ++ V K S + + L AG + + + +A
Sbjct: 7 VEKYRPKTLDDVVGQDDIIRALK-------GFVEKRS-MPHLLFAGPAGTGKTTTALALA 58
Query: 163 NSARDKLEV-----LELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
N E+ LELNASD+RGI +R +I FA T + +K+I LDEAD +T D
Sbjct: 59 NDLYKSEELVAANYLELNASDERGIDTIRTKIKDFAKTAPFGEVPFKIIHLDEADNLTAD 118
Query: 218 AQNALRRKL---------------------------------PVTPDGKK---------- 234
AQ ALRR + P+ + K
Sbjct: 119 AQQALRRIMEMYSATTRFIFACNYSSKIIEPIQSRCAVFRFGPIPEEAIKNRLIMIAERE 178
Query: 235 ----------AIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
AII +++GD+RK +N+LQ+ A+A A V+ VY G E+ R
Sbjct: 179 GLKYTEDGISAIIYVAEGDLRKAINLLQT-ASAMASTVDSKVVYRVAGLAHPEEV----R 233
Query: 285 WLLNESM 291
++N ++
Sbjct: 234 AMINSAL 240
>gi|336476385|ref|YP_004615526.1| replication factor C [Methanosalsum zhilinae DSM 4017]
gi|335929766|gb|AEH60307.1| Replication factor C [Methanosalsum zhilinae DSM 4017]
Length = 317
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++ LPHLLF GPPG GKT T +A A +L+ + +N ELNASD+RGI +VR
Sbjct: 27 RLKSYVKTRNLPHLLFSGPPGVGKTATAVAIAHELFGDS-WNENFTELNASDERGIDVVR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+I FA T + + +K+I LDEADA+T+DAQ+ALRR +E++T N RF + CNY SKI
Sbjct: 86 TKIKNFAKTSPIGGADFKIIFLDEADALTSDAQSALRRTMERYTGNCRFILSCNYSSKII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSRC +RF PL + R+ Y
Sbjct: 146 EPIQSRCAVYRFRPLADEPVKERIRY 171
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 99/188 (52%), Gaps = 26/188 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E++T N RF + CNY SKI IQSRC +RF PL + R+ YV + E + + D
Sbjct: 125 MERYTGNCRFILSCNYSSKIIEPIQSRCAVYRFRPLADEPVKERIRYVADAEGIKLADDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSA----------------ATAHADEVNEDTIFTL---LVS 101
AI ++ GDMRK LN LQ+A ATAH DE+ L +
Sbjct: 185 IDAIGYVAQGDMRKALNALQAAAMFDETIQKEMIYKITATAHPDEIKTLINIALDGNFSA 244
Query: 102 RVEKYRPSTLDELVSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
EK L++ +S +D++ I +IP+ LV+L+ + +I++R+ G +EKIQ
Sbjct: 245 AREKLDTLMLEQGLSGEDVVGQIYRAMFGLDIPDKKLVELIDVIGEIDFRITEGANEKIQ 304
Query: 155 LSALIAAF 162
L AL+A F
Sbjct: 305 LQALLAHF 312
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 99/233 (42%), Gaps = 82/233 (35%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
+EKYRP LD++V ++ I ++ +K ++ + L +G + + +A
Sbjct: 7 IEKYRPMKLDDVVGQKEAIERLK--------SYVKTRNLPHLLFSGPPGVGKTATAVAIA 58
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
F + ++ ELNASD+RGI +VR +I FA T + + +K+I LDEADA+T+DA
Sbjct: 59 HELFGDSWNE-NFTELNASDERGIDVVRTKIKNFAKTSPIGGADFKIIFLDEADALTSDA 117
Query: 219 QNALRRKL--------------------------------------PVTP---------- 230
Q+ALRR + PV
Sbjct: 118 QSALRRTMERYTGNCRFILSCNYSSKIIEPIQSRCAVYRFRPLADEPVKERIRYVADAEG 177
Query: 231 -----DGKKAIIDLSDGDMRKVLNILQSA----------------ATAHADEV 262
D AI ++ GDMRK LN LQ+A ATAH DE+
Sbjct: 178 IKLADDAIDAIGYVAQGDMRKALNALQAAAMFDETIQKEMIYKITATAHPDEI 230
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 44/65 (67%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
K+ + +E+GL+ D++ +I + L+IP+ LV+L+ + +I++R+ G +EKIQL A
Sbjct: 248 KLDTLMLEQGLSGEDVVGQIYRAMFGLDIPDKKLVELIDVIGEIDFRITEGANEKIQLQA 307
Query: 515 LIAAF 519
L+A F
Sbjct: 308 LLAHF 312
>gi|448417391|ref|ZP_21579327.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
gi|445677879|gb|ELZ30375.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
Length = 329
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 100/149 (67%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ +I++++LPHLLF GP G GKTT+ A AR +Y + LELNASD+RGI
Sbjct: 33 DIVDRLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAVYGD-DWRGNFLELNASDERGI 91
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + Y++I LDEAD++T+DAQ+ALRR +E+F+ N RF + CNY
Sbjct: 92 DVVRDRIKNFARA-SFGGYDYRIIFLDEADSLTSDAQSALRRTMEQFSDNTRFVLSCNYS 150
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
SKI IQSRC FRF PL + +++
Sbjct: 151 SKIIDPIQSRCAVFRFSPLGDDAVRKQVE 179
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 106/201 (52%), Gaps = 36/201 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL + +++ + E E + +T DG
Sbjct: 134 MEQFSDNTRFVLSCNYSSKIIDPIQSRCAVFRFSPLGDDAVRKQVEAIAETEGIELTEDG 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
A++ + GDMR+ +N LQ+AAT + V+E+ ++ L+ S RP ++E+V
Sbjct: 194 LDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVY-LITSTA---RPEDIEEMVQSAID 248
Query: 116 -------------------SHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
+ DII + ++ E V L+ ++ + +YR+ G
Sbjct: 249 GEFLAARSKLETLLVDTGMAGGDIIDQLHRSVWEFDLDERATVRLMERIGEADYRITEGA 308
Query: 150 SEKIQLSALIAAFNSARDKLE 170
+E++QL AL+A+ +A D+ E
Sbjct: 309 NEQVQLEALLASLAAASDEYE 329
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 99/221 (44%), Gaps = 64/221 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP TL+++ +DI+ + I + L L+ AG + +A+
Sbjct: 17 IEKYRPQTLEDVYGQEDIVDRLRSYIEQDDLPHLLFAGP-------AGVGKTTSATAIAR 69
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
A + LELNASD+RGI +VRD+I FA + Y++I LDEAD++T+DAQ+
Sbjct: 70 AVYGDDWRGNFLELNASDERGIDVVRDRIKNFARA-SFGGYDYRIIFLDEADSLTSDAQS 128
Query: 221 ALRRKL-----------------------------------------------------P 227
ALRR +
Sbjct: 129 ALRRTMEQFSDNTRFVLSCNYSSKIIDPIQSRCAVFRFSPLGDDAVRKQVEAIAETEGIE 188
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
+T DG A++ + GDMR+ +N LQ+AAT + V+E+ VY
Sbjct: 189 LTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVY 228
>gi|313124845|ref|YP_004035109.1| replication factor c small subunit [Halogeometricum borinquense DSM
11551]
gi|448287254|ref|ZP_21478467.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|312291210|gb|ADQ65670.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|445572462|gb|ELY27000.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
Length = 328
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 97/139 (69%), Gaps = 2/139 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ +I++++LPHLLF GP G GKTT+ A AR +Y + LELNASD+RGI
Sbjct: 34 DIVERLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAIYGD-DWRGNFLELNASDERGI 92
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + + Y++I LDEAD++T+DAQ+ALRR +E+F+ N RF + CNY
Sbjct: 93 DVVRDRIKNFARS-SFGGFDYRIIFLDEADSLTSDAQSALRRTMEQFSDNTRFILSCNYS 151
Query: 412 SKIPPAIQSRCTRFRFGPL 430
SKI IQSRC FRF PL
Sbjct: 152 SKIIDPIQSRCAVFRFSPL 170
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 95/185 (51%), Gaps = 36/185 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL + ++ + E E++ +T DG
Sbjct: 135 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVREQVKDIAETEEIELTEDG 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
A++ + GDMR+ +N LQ+AAT + V+E+ ++ L+ S RP ++E+V
Sbjct: 195 LDALVYAAGGDMRRAINSLQAAATT-GEIVDEEAVY-LITSTA---RPEDIEEMVQSAID 249
Query: 116 -------------------SHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
+ DII + ++ E V L+ ++ + +YR+ G
Sbjct: 250 GEFLTARSKLETLLVDTGMAGGDIIDQLHRSVWDFDLDERTTVRLMERIGEADYRITEGA 309
Query: 150 SEKIQ 154
+E++Q
Sbjct: 310 NEQVQ 314
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 102/221 (46%), Gaps = 64/221 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP TLD++ +DI+ + I + L L+ + AG + +A+
Sbjct: 18 IEKYRPQTLDDVYGQEDIVERLRSYIEQDDLPHLL-------FAGPAGVGKTTSATAIAR 70
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
A + LELNASD+RGI +VRD+I FA + + Y++I LDEAD++T+DAQ+
Sbjct: 71 AIYGDDWRGNFLELNASDERGIDVVRDRIKNFARS-SFGGFDYRIIFLDEADSLTSDAQS 129
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR ++
Sbjct: 130 ALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVREQVKDIAETEEIE 189
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
+T DG A++ + GDMR+ +N LQ+AAT + V+E+ VY
Sbjct: 190 LTEDGLDALVYAAGGDMRRAINSLQAAATT-GEIVDEEAVY 229
>gi|359415519|ref|ZP_09207966.1| replication factor C small subunit [Candidatus Haloredivivus sp.
G17]
gi|358034122|gb|EHK02580.1| replication factor C small subunit [Candidatus Haloredivivus sp.
G17]
Length = 315
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 101/146 (69%), Gaps = 2/146 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ F++E +PH+LF GPPGTGKTT +A A+ LY ++ +E NAS++RGI
Sbjct: 22 EITERLEAFVEEESIPHMLFSGPPGTGKTTCAVALAKDLYGD-EWKQNFMETNASEERGI 80
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR++I FA TK ++ + YK+I LDEAD++T+DAQ ALRR +E+F+ N RF + CNY
Sbjct: 81 DVVREKIKDFARTKAIN-AEYKIIFLDEADSLTSDAQQALRRTMEQFSDNCRFIMSCNYS 139
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMS 437
SKI IQSRC FRF L+ + S
Sbjct: 140 SKIIDPIQSRCAVFRFNRLEEGDVKS 165
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 103/191 (53%), Gaps = 28/191 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF L+ + S + + E E +++ D
Sbjct: 123 MEQFSDNCRFIMSCNYSSKIIDPIQSRCAVFRFNRLEEGDVKSYIQRLGESENFSISEDA 182
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+A++ +SDGD+R+V N+LQ+AA + DE+ E+ ++++ S K L++ +S+
Sbjct: 183 VEAVMRVSDGDLRRVTNVLQTAAIS-TDEIEEEDVYSVSASLKPKEITEILEKTISNQFI 241
Query: 118 -----------------QDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
QD++S+I +I + ++L+ + + E+R+ G S +
Sbjct: 242 DARDQLSDLMIERGLDGQDVVSSIHREVYNLDISDQQKLELIEALGEFEFRITEGASADV 301
Query: 154 QLSALIAAFNS 164
Q+ AL+A S
Sbjct: 302 QIEALLAKIAS 312
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 115/254 (45%), Gaps = 73/254 (28%)
Query: 104 EKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
EK+RP+TL E+V +I +E + E + ++ + GT + AL
Sbjct: 7 EKHRPNTLSEVVGQNEITERLEAFVEEESIPHML-------FSGPPGTGKTTCAVALAKD 59
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
K +E NAS++RGI +VR++I FA TK ++ + YK+I LDEAD++T+DAQ A
Sbjct: 60 LYGDEWKQNFMETNASEERGIDVVREKIKDFARTKAIN-AEYKIIFLDEADSLTSDAQQA 118
Query: 222 LRRKL-----------------------------------------------------PV 228
LRR + +
Sbjct: 119 LRRTMEQFSDNCRFIMSCNYSSKIIDPIQSRCAVFRFNRLEEGDVKSYIQRLGESENFSI 178
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
+ D +A++ +SDGD+R+V N+LQ+AA + DE+ E+ VY+ EIT IL ++
Sbjct: 179 SEDAVEAVMRVSDGDLRRVTNVLQTAAIS-TDEIEEEDVYSVSASLKPKEITEILEKTIS 237
Query: 289 ESMDLCYKINRFID 302
N+FID
Sbjct: 238 ---------NQFID 242
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 40/67 (59%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
++ ++ IE+GL D+++ I V+ L+I + ++L+ + + E+R+ G S +Q+ A
Sbjct: 246 QLSDLMIERGLDGQDVVSSIHREVYNLDISDQQKLELIEALGEFEFRITEGASADVQIEA 305
Query: 515 LIAAFNS 521
L+A S
Sbjct: 306 LLAKIAS 312
>gi|195163892|ref|XP_002022783.1| GL14564 [Drosophila persimilis]
gi|194104806|gb|EDW26849.1| GL14564 [Drosophila persimilis]
Length = 354
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 106/152 (69%), Gaps = 8/152 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP++L YGPPGTGKT+TILA AR+++ + +LELNASD+RGI +VR
Sbjct: 55 LRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFGD-MYKDRILELNASDERGINVVRT 113
Query: 357 QIFQFASTKTMHK-------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+I F+ H +K+IILDEAD+MT+ AQ+ALRR +EK +++ RFC+ICN
Sbjct: 114 KIKNFSQLSASHVRPDGRPVPPFKIIILDEADSMTHAAQSALRRTMEKESSSTRFCLICN 173
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
Y+S+I I SRC++FRF PL I++RL +
Sbjct: 174 YVSRIIVPITSRCSKFRFKPLGEEKIIARLQH 205
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK +++ RFC+ICNY+S+I I SRC++FRF PL I++RL ++ E E V + PD
Sbjct: 159 MEKESSSTRFCLICNYVSRIIVPITSRCSKFRFKPLGEEKIIARLQHICELESVKIDPDA 218
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE--VNEDTIFTL 98
K I+ +S GD+R+ + LQS E +N +F +
Sbjct: 219 YKTIVKISGGDLRRAITTLQSCFRLQGSEHTINTADLFEM 258
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 124/297 (41%), Gaps = 89/297 (29%)
Query: 72 MRKVLNILQSAATAHADEVNEDTI--FTLLVSRVEKYRPSTLDELVSHQDIISTIEIPES 129
M+ L +S A++ +D+ T+ VEKYRP ++D++V ++++ +
Sbjct: 1 MQAFLKTGKSGASSGSDKPQGGTVERRKPPAPWVEKYRPRSVDDVVEQSEVVAVLR---- 56
Query: 130 MLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD------KLEVLELNASDDRGIG 183
++ +D+ L G + S ++AA AR K +LELNASD+RGI
Sbjct: 57 ----KCVEGADLPNMLLYGPPGTGKTSTILAA---ARQIFGDMYKDRILELNASDERGIN 109
Query: 184 IVRDQIFQFASTKTMHK-------SSYKLIILDEADAMTNDAQNALRRKL---------- 226
+VR +I F+ H +K+IILDEAD+MT+ AQ+ALRR +
Sbjct: 110 VVRTKIKNFSQLSASHVRPDGRPVPPFKIIILDEADSMTHAAQSALRRTMEKESSSTRFC 169
Query: 227 -----------PVT--------------------------------PDGKKAIIDLSDGD 243
P+T PD K I+ +S GD
Sbjct: 170 LICNYVSRIIVPITSRCSKFRFKPLGEEKIIARLQHICELESVKIDPDAYKTIVKISGGD 229
Query: 244 MRKVLNILQSAATAHADE--VNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYKIN 298
+R+ + LQS E +N ++ G I +LL++ MD+C N
Sbjct: 230 LRRAITTLQSCFRLQGSEHTINTADLFEMSGV--------IPDYLLDDFMDVCRSGN 278
>gi|389845694|ref|YP_006347933.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|448616684|ref|ZP_21665394.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|388243000|gb|AFK17946.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|445751339|gb|EMA02776.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
Length = 330
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 95/144 (65%), Gaps = 1/144 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +I+ ++LPHLLF GP G GKTT+ A AR LY + LELNASD+RGI
Sbjct: 36 EIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARTLYGD-DWRGNFLELNASDERGI 94
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + + Y +I LDEAD++TNDAQ+ALRR +E+F+ RF + CNY
Sbjct: 95 DVVRDRIKNFARSSFNPERGYTIIFLDEADSLTNDAQSALRRTMEEFSDKTRFILSCNYS 154
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLI 435
SKI IQSRC FRF PL I
Sbjct: 155 SKIIDPIQSRCAVFRFSPLGDDAI 178
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 99/222 (44%), Gaps = 65/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
+EKYRP TLD++ ++I+ + ++ D+ + L AG + +A+
Sbjct: 20 IEKYRPQTLDDIYGQEEIVERLR--------SYIERDDLPHLLFAGPAGVGKTTSATAIA 71
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
+ LELNASD+RGI +VRD+I FA + + Y +I LDEAD++TNDAQ
Sbjct: 72 RTLYGDDWRGNFLELNASDERGIDVVRDRIKNFARSSFNPERGYTIIFLDEADSLTNDAQ 131
Query: 220 NALRRKL---------------------PV------------------------------ 228
+ALRR + P+
Sbjct: 132 SALRRTMEEFSDKTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQTRDIAEAEGI 191
Query: 229 --TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
T G A++ + GDMR+ +N LQ+AAT + V+E+ VY
Sbjct: 192 ELTEGGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVY 232
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 36/185 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ RF + CNY SKI IQSRC FRF PL I + + E E + +T G
Sbjct: 138 MEEFSDKTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQTRDIAEAEGIELTEGG 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
A++ + GDMR+ +N LQ+AAT + V+E+ ++ L+ S RP ++++V
Sbjct: 198 LDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVY-LITSTA---RPEDIEKMVRAAID 252
Query: 116 -------------------SHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
+ DII + ++ E V L+ ++ + +YR++ G
Sbjct: 253 GEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWDFDLDERDAVHLMERIGEADYRISEGA 312
Query: 150 SEKIQ 154
+E++Q
Sbjct: 313 NEQVQ 317
>gi|449662894|ref|XP_004205637.1| PREDICTED: uncharacterized protein LOC101236243 [Hydra
magnipapillata]
Length = 597
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 94/137 (68%), Gaps = 5/137 (3%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
+++ ++PHLLFYGPPGTGKT+TI A +LY M + +NAS++RGI +VR++I
Sbjct: 43 YLNRPDIPHLLFYGPPGTGKTSTIEAFVNELYGHDLVEFMTMNINASEERGIEVVRNKIK 102
Query: 360 QFASTKTMH-----KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
F ST + YK +ILDEADAMT DAQ L+++IE +T N RFC+ICN + KI
Sbjct: 103 DFVSTDPIRFGKNGSPKYKFVILDEADAMTLDAQCMLKQVIEYYTDNARFCLICNCVKKI 162
Query: 415 PPAIQSRCTRFRFGPLD 431
PAIQSRC+ F F P+D
Sbjct: 163 EPAIQSRCSVFNFPPMD 179
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 111/253 (43%), Gaps = 71/253 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VE++RP+ LD ++SH + I ++I L DI + L G + S + A
Sbjct: 19 VERFRPNVLDGIMSHCENIRVLKI--------YLNRPDIPHLLFYGPPGTGKTSTIEAFV 70
Query: 163 NS--ARDKLE--VLELNASDDRGIGIVRDQIFQFASTKTMH-----KSSYKLIILDEADA 213
N D +E + +NAS++RGI +VR++I F ST + YK +ILDEADA
Sbjct: 71 NELYGHDLVEFMTMNINASEERGIEVVRNKIKDFVSTDPIRFGKNGSPKYKFVILDEADA 130
Query: 214 MTNDAQ--------------------------------------------NALRRKL--- 226
MT DAQ +++R+K+
Sbjct: 131 MTLDAQCMLKQVIEYYTDNARFCLICNCVKKIEPAIQSRCSVFNFPPMDYDSVRKKIRMI 190
Query: 227 ------PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEIT 280
+T DG + + LS GDMRKVL++LQ + +++ D + YPT EI
Sbjct: 191 AKETNFTITNDGIQTLWKLSKGDMRKVLHMLQVIGINNK-KIDSDKITKIKNYPTNNEID 249
Query: 281 NILRWLLNESMDL 293
NI LL + M L
Sbjct: 250 NIYETLLKDIMPL 262
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 53/80 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE +T N RFC+ICN + KI PAIQSRC+ F F P+D + ++ + ++ +T DG
Sbjct: 143 IEYYTDNARFCLICNCVKKIEPAIQSRCSVFNFPPMDYDSVRKKIRMIAKETNFTITNDG 202
Query: 61 KKAIIDLSDGDMRKVLNILQ 80
+ + LS GDMRKVL++LQ
Sbjct: 203 IQTLWKLSKGDMRKVLHMLQ 222
>gi|363539784|ref|YP_004894673.1| mg622 gene product [Megavirus chiliensis]
gi|350610949|gb|AEQ32393.1| putative replication factor C small subunit [Megavirus chiliensis]
Length = 364
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 99/145 (68%), Gaps = 9/145 (6%)
Query: 303 ENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362
+ E+ H LFYGPPGTGKT+ ILA R+++ K F V+E NASDDRGI VR++I A
Sbjct: 39 KGEMTHFLFYGPPGTGKTSVILAMGREIF-KEHFTTRVIEFNASDDRGINAVREKITNEA 97
Query: 363 S---TKTMHKS-----SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
T+ + SYK+IILDEAD+MT++AQ+ALR IIE+++T RFC ICNY+SKI
Sbjct: 98 KKFVTQIVKPDGTIIPSYKIIILDEADSMTDEAQDALRVIIEQYSTTTRFCFICNYISKI 157
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRL 439
AI+SRCT F LD ++ +L
Sbjct: 158 TDAIKSRCTAIYFKKLDDGCMIDKL 182
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE+++T RFC ICNY+SKIT AI+SRCT F LD ++ +L + +E + ++ +
Sbjct: 138 IEQYSTTTRFCFICNYISKITDAIKSRCTAIYFKKLDDGCMIDKLKEISTKESMKLSNEI 197
Query: 61 KKAIIDLSDGDMRKVLNILQS 81
IID+S+GDMRK + +LQ+
Sbjct: 198 LSTIIDVSNGDMRKAIMLLQN 218
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 13/132 (9%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V +EKYRP L + V Q++I+ + + +M+ + GT + + A+
Sbjct: 9 VPWIEKYRPRKLKDFVQSQNLINLFKNSTAKG-----EMTHFLFYGPPGTGKTSVILAMG 63
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFAS---TKTMHKS-----SYKLIILDEA 211
V+E NASDDRGI VR++I A T+ + SYK+IILDEA
Sbjct: 64 REIFKEHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKPDGTIIPSYKIIILDEA 123
Query: 212 DAMTNDAQNALR 223
D+MT++AQ+ALR
Sbjct: 124 DSMTDEAQDALR 135
>gi|371943985|gb|AEX61813.1| putative replication factor C small subunit [Megavirus courdo7]
gi|425701544|gb|AFX92706.1| putative replication factor C small subunit [Megavirus courdo11]
Length = 364
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 99/145 (68%), Gaps = 9/145 (6%)
Query: 303 ENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362
+ E+ H LFYGPPGTGKT+ ILA R+++ K F V+E NASDDRGI VR++I A
Sbjct: 39 KGEMTHFLFYGPPGTGKTSVILAMGREIF-KEHFTTRVIEFNASDDRGINAVREKITNEA 97
Query: 363 S---TKTMHKS-----SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
T+ + SYK+IILDEAD+MT++AQ+ALR IIE+++T RFC ICNY+SKI
Sbjct: 98 KKFVTQIVKPDGTIIPSYKIIILDEADSMTDEAQDALRVIIEQYSTTTRFCFICNYISKI 157
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRL 439
AI+SRCT F LD ++ +L
Sbjct: 158 TDAIKSRCTAIYFKKLDDECMIDKL 182
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE+++T RFC ICNY+SKIT AI+SRCT F LD ++ +L + +E + ++ +
Sbjct: 138 IEQYSTTTRFCFICNYISKITDAIKSRCTAIYFKKLDDECMIDKLKEISTKESMKLSNEI 197
Query: 61 KKAIIDLSDGDMRKVLNILQS 81
IID+S+GDMRK + +LQ+
Sbjct: 198 LSTIIDVSNGDMRKAIMLLQN 218
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 13/132 (9%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V +EKYRP L + V Q++I+ + + +M+ + GT + + A+
Sbjct: 9 VPWIEKYRPRKLKDFVQSQNLINLFKNSTAKG-----EMTHFLFYGPPGTGKTSVILAMG 63
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFAS---TKTMHKS-----SYKLIILDEA 211
V+E NASDDRGI VR++I A T+ + SYK+IILDEA
Sbjct: 64 REIFKEHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKPDGTIIPSYKIIILDEA 123
Query: 212 DAMTNDAQNALR 223
D+MT++AQ+ALR
Sbjct: 124 DSMTDEAQDALR 135
>gi|222478820|ref|YP_002565057.1| replication factor C small subunit [Halorubrum lacusprofundi ATCC
49239]
gi|222451722|gb|ACM55987.1| Replication factor C [Halorubrum lacusprofundi ATCC 49239]
Length = 327
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 98/143 (68%), Gaps = 2/143 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ +I+++++PHLLF GP GTGKTT A AR++Y + LELNASD RGI +VR
Sbjct: 39 RLQSYIEQDDIPHLLFGGPAGTGKTTAATAIARQVYGDDNWRGNFLELNASDQRGIDVVR 98
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA ++ ++++ LDEAD++T++AQ ALRR +E+F+ N RF + CNY SKI
Sbjct: 99 DRIKGFA--RSSFGGDFRIVFLDEADSLTDEAQAALRRTMEQFSDNTRFILSCNYSSKII 156
Query: 416 PAIQSRCTRFRFGPLDSSLIMSR 438
IQSRC FRF PL + + ++
Sbjct: 157 DPIQSRCAVFRFSPLSDAAVAAQ 179
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 28/181 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL + + ++ + E + VT +G
Sbjct: 136 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDAAVAAQTREIAAAEGIEVTDEG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLV-SRVEKYRP----------- 108
A++ +DGDMR+ +N LQ+AAT + V+E+ ++ + +R E+
Sbjct: 196 VDALVYAADGDMRRAINSLQAAATT-GEIVDEEAVYAITATARPEEIESMVTNALHGDFT 254
Query: 109 ---STLDELVSH-----QDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+TLD L++ D+I + ++ E V L+ ++ + +YR+A G +E++
Sbjct: 255 RARATLDTLLTETGMAGGDVIDQLHRSVWEFDLSEREAVALMERIGEADYRIAEGANEQV 314
Query: 154 Q 154
Q
Sbjct: 315 Q 315
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 116/265 (43%), Gaps = 83/265 (31%)
Query: 80 QSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMS 139
Q+AATA E+ +EKYRP +LD++ + I+ ++ ++
Sbjct: 7 QTAATATGREI-----------WIEKYRPQSLDDIHGQEAIVERLQ--------SYIEQD 47
Query: 140 DIEYRLAAGTSEKIQLSALIA----AFNSARDKLEVLELNASDDRGIGIVRDQIFQFAST 195
DI + L G + + +A A + + LELNASD RGI +VRD+I FA
Sbjct: 48 DIPHLLFGGPAGTGKTTAATAIARQVYGDDNWRGNFLELNASDQRGIDVVRDRIKGFA-- 105
Query: 196 KTMHKSSYKLIILDEADAMTNDAQNALRRKL----------------------------- 226
++ ++++ LDEAD++T++AQ ALRR +
Sbjct: 106 RSSFGGDFRIVFLDEADSLTDEAQAALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAV 165
Query: 227 ------------------------PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEV 262
VT +G A++ +DGDMR+ +N LQ+AAT + V
Sbjct: 166 FRFSPLSDAAVAAQTREIAAAEGIEVTDEGVDALVYAADGDMRRAINSLQAAATT-GEIV 224
Query: 263 NEDTVY--NSVGYPTKTE--ITNIL 283
+E+ VY + P + E +TN L
Sbjct: 225 DEEAVYAITATARPEEIESMVTNAL 249
>gi|354609736|ref|ZP_09027692.1| Replication factor C small subunit [Halobacterium sp. DL1]
gi|353194556|gb|EHB60058.1| Replication factor C small subunit [Halobacterium sp. DL1]
Length = 323
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 99/148 (66%), Gaps = 2/148 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ ++D ++LPHLLF GP GTGKT + ++ A+++Y + LELNASD RGI
Sbjct: 29 DITERLQSYVDRDDLPHLLFAGPAGTGKTASAVSIAKEIYGD-DWQENFLELNASDQRGI 87
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + Y++I LDEADA+T+DAQ+ALRR +E+F+ N RF + CNY
Sbjct: 88 DVVRDRIKNFARA-SFGGYDYRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYS 146
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI IQSRC FRF +D + + L
Sbjct: 147 SKIIDPIQSRCAVFRFSQIDDDAVAAHL 174
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 104/188 (55%), Gaps = 28/188 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF +D + + L + +E + T G
Sbjct: 130 MEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFSQIDDDAVAAHLRDIAGREDLEYTEAG 189
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLV-SRVEKYRP----------- 108
A++ +DGDMR+ +N LQ AA+A D V+E+ ++ + +R E+
Sbjct: 190 IDALVYAADGDMRRAINALQ-AASATGDAVDEEVVYAITATARPEEIEGMVTEALDGDFT 248
Query: 109 ---STLDELVSHQ-----DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
STLD+L++++ DII I ++ E V L+ ++ + ++R+A G +E++
Sbjct: 249 AARSTLDDLLTNRGLAGGDIIDQIHRSVWSFDVEEEAAVRLLDRLGEADFRIAEGANERV 308
Query: 154 QLSALIAA 161
QL AL+A+
Sbjct: 309 QLEALLAS 316
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 108/253 (42%), Gaps = 70/253 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG--TSEKIQLSALIA 160
VEKYRP L+++V H DI ++ + D+ + L AG + K + IA
Sbjct: 13 VEKYRPERLEDVVGHPDITERLQS--------YVDRDDLPHLLFAGPAGTGKTASAVSIA 64
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D E LELNASD RGI +VRD+I FA + Y++I LDEADA+T+DAQ
Sbjct: 65 KEIYGDDWQENFLELNASDQRGIDVVRDRIKNFARA-SFGGYDYRVIFLDEADALTDDAQ 123
Query: 220 NALRR-----------------------------------------------------KL 226
+ALRR L
Sbjct: 124 SALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFSQIDDDAVAAHLRDIAGREDL 183
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
T G A++ +DGDMR+ +N LQ AA+A D V+E+ VY EI +
Sbjct: 184 EYTEAGIDALVYAADGDMRRAINALQ-AASATGDAVDEEVVYAITATARPEEIEG----M 238
Query: 287 LNESMDLCYKINR 299
+ E++D + R
Sbjct: 239 VTEALDGDFTAAR 251
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%)
Query: 463 KGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 518
+GLA DI+ +I V ++ E V L+ ++ + ++R+A G +E++QL AL+A+
Sbjct: 261 RGLAGGDIIDQIHRSVWSFDVEEEAAVRLLDRLGEADFRIAEGANERVQLEALLAS 316
>gi|254168320|ref|ZP_04875166.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|254169364|ref|ZP_04876193.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289595866|ref|YP_003482562.1| Replication factor C [Aciduliprofundum boonei T469]
gi|197621683|gb|EDY34269.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|197622829|gb|EDY35398.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289533653|gb|ADD08000.1| Replication factor C [Aciduliprofundum boonei T469]
Length = 317
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++ +PHLLF GP GTGKTT +A AR+L+ + + A ELNASD+RGIGIVR
Sbjct: 26 RLKSYVKAKTMPHLLFAGPAGTGKTTCAIALARELFGE-NWRASFHELNASDERGIGIVR 84
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+I ++A T + +K+I LDEADA+T DAQ ALRR +E ++ RF + CNY SKI
Sbjct: 85 TKIKEYARTAAPNDVGFKIIFLDEADALTPDAQAALRRTMEMYSRTCRFILSCNYSSKII 144
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSRC FRF PL S I RL Y
Sbjct: 145 EPIQSRCAVFRFTPLKSEDIKKRLKY 170
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 102/195 (52%), Gaps = 28/195 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CNY SKI IQSRC FRF PL S I RL Y+ + E +T D
Sbjct: 124 MEMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLKSEDIKKRLKYIADSEGKKITEDA 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF--TLLVSR--VEKYRPSTLD---- 112
AI+ +S GDMRK +NILQ +A A +D ++E ++ T L R VE L
Sbjct: 184 LNAIVYISGGDMRKAINILQMSA-AISDTIDEGVVYKATGLAKREDVEDVLKKALAGDFI 242
Query: 113 -----------EL-VSHQDIISTIE-------IPESMLVDLVLKMSDIEYRLAAGTSEKI 153
EL +S +D+I I I + + V+L+ K +IE+R+ G +E+I
Sbjct: 243 EARNKLNKLLVELGLSGEDVIKQIHRVIYDLPIDDRLKVELLDKTGEIEFRIVEGANERI 302
Query: 154 QLSALIAAFNSARDK 168
QL AL+A F A K
Sbjct: 303 QLDALLAYFTLAGSK 317
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 120/255 (47%), Gaps = 60/255 (23%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP +LDE+V +I+ ++ M + + AGT + AL
Sbjct: 6 VEKYRPKSLDEVVGQDEIVDRLKSYVKAKT-----MPHLLFAGPAGTGKTTCAIALAREL 60
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
+ ELNASD+RGIGIVR +I ++A T + +K+I LDEADA+T DAQ AL
Sbjct: 61 FGENWRASFHELNASDERGIGIVRTKIKEYARTAAPNDVGFKIIFLDEADALTPDAQAAL 120
Query: 223 RRKL---------------------PV---------TP----------------DGKK-- 234
RR + P+ TP +GKK
Sbjct: 121 RRTMEMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLKSEDIKKRLKYIADSEGKKIT 180
Query: 235 -----AIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL-RWLLN 288
AI+ +S GDMRK +NILQ +A A +D ++E VY + G + ++ ++L + L
Sbjct: 181 EDALNAIVYISGGDMRKAINILQMSA-AISDTIDEGVVYKATGLAKREDVEDVLKKALAG 239
Query: 289 ESMDLCYKINRFIDE 303
+ ++ K+N+ + E
Sbjct: 240 DFIEARNKLNKLLVE 254
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 46/71 (64%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
K+ ++ +E GL+ D++ +I +++ L I + + V+L+ K +IE+R+ G +E+IQL A
Sbjct: 247 KLNKLLVELGLSGEDVIKQIHRVIYDLPIDDRLKVELLDKTGEIEFRIVEGANERIQLDA 306
Query: 515 LIAAFNSARDK 525
L+A F A K
Sbjct: 307 LLAYFTLAGSK 317
>gi|448825607|ref|YP_007418538.1| putative replication factor C small subunit [Megavirus lba]
gi|444236792|gb|AGD92562.1| putative replication factor C small subunit [Megavirus lba]
Length = 364
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 99/145 (68%), Gaps = 9/145 (6%)
Query: 303 ENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362
+ E+ H LFYGPPGTGKT+ ILA R+++ K F V+E NASDDRGI VR++I A
Sbjct: 39 KGEMTHFLFYGPPGTGKTSVILAMGREIF-KEHFTTRVIEFNASDDRGINAVREKITNEA 97
Query: 363 S---TKTMHKS-----SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
T+ + SYK+IILDEAD+MT++AQ+ALR IIE+++T RFC ICNY+SKI
Sbjct: 98 KKFVTQIVKPDGTIIPSYKIIILDEADSMTDEAQDALRVIIEQYSTTTRFCFICNYISKI 157
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRL 439
AI+SRCT F LD ++ +L
Sbjct: 158 TDAIKSRCTAIYFKKLDDECMIDKL 182
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE+++T RFC ICNY+SKIT AI+SRCT F LD ++ +L + +E + ++ +
Sbjct: 138 IEQYSTTTRFCFICNYISKITDAIKSRCTAIYFKKLDDECMIDKLKEISTKESMKLSNEI 197
Query: 61 KKAIIDLSDGDMRKVLNILQS 81
IID+S+GDMRK + +LQ+
Sbjct: 198 LSTIIDVSNGDMRKAIMLLQN 218
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 69/132 (52%), Gaps = 13/132 (9%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V +EKYRP L + V Q++I+ + + +M+ + GT + + A+
Sbjct: 9 VPWIEKYRPRKLKDFVQSQNLINLFKNSTAKG-----EMTHFLFYGPPGTGKTSVILAMG 63
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFAS---TKTMHKS-----SYKLIILDEA 211
V+E NASDDRGI VR++I A T+ + SYK+IILDEA
Sbjct: 64 REIFKEHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKPDGTIIPSYKIIILDEA 123
Query: 212 DAMTNDAQNALR 223
D+MT++AQ+ALR
Sbjct: 124 DSMTDEAQDALR 135
>gi|448579007|ref|ZP_21644323.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
gi|445724360|gb|ELZ75993.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
Length = 329
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 96/144 (66%), Gaps = 2/144 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +I+ ++LPHLLF GP G GKTT+ A AR +Y + LELNASD RGI
Sbjct: 36 EIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD-DWRGNFLELNASDQRGI 94
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + + Y++I LDEAD++TNDAQ+ALRR +E+F+ N RF + CNY
Sbjct: 95 DVVRDRIKNFARS-SFGGHDYRIIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYS 153
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLI 435
SKI IQSRC FRF PL I
Sbjct: 154 SKIIDPIQSRCAVFRFSPLGDDAI 177
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 36/185 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL I + + E + +T DG
Sbjct: 137 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAAAEGIELTEDG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
A++ + GDMR+ +N LQ+AAT + V+E+ ++ + + RP ++++V
Sbjct: 197 LDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYMITST----ARPEDIEQMVRDAID 251
Query: 116 -------------------SHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
+ DII + ++ E V L+ ++ + +YR++ G
Sbjct: 252 GEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWDFDLDERAAVRLMERIGEADYRISEGA 311
Query: 150 SEKIQ 154
+E++Q
Sbjct: 312 NEQVQ 316
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 101/222 (45%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
+EKYRP TLD++ ++I+ + ++ D+ + L AG + +A+
Sbjct: 20 IEKYRPQTLDDVYGQEEIVERLR--------SYIERDDLPHLLFAGPAGVGKTTSATAIA 71
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
A + LELNASD RGI +VRD+I FA + + Y++I LDEAD++TNDAQ
Sbjct: 72 RAIYGDDWRGNFLELNASDQRGIDVVRDRIKNFARS-SFGGHDYRIIFLDEADSLTNDAQ 130
Query: 220 NALRRKL---------------------PV------------------------------ 228
+ALRR + P+
Sbjct: 131 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAAAEGI 190
Query: 229 --TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
T DG A++ + GDMR+ +N LQ+AAT + V+E+ VY
Sbjct: 191 ELTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVY 231
>gi|451927308|gb|AGF85186.1| replication factor C small subunit [Moumouvirus goulette]
Length = 369
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 100/148 (67%), Gaps = 9/148 (6%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
I + E+ H LFYGPPGTGKT+ ILA R+++ K F V+E NASDDRGI VR++I
Sbjct: 36 ISKGEMTHFLFYGPPGTGKTSAILAMGREIF-KEHFPTRVIEFNASDDRGINAVREKITN 94
Query: 361 FASTKTMHKS--------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
A S SYK+IILDEAD+MT++AQ+ALR IIE+++T RFC ICNY++
Sbjct: 95 EAKKYVTSISNPDGTIIPSYKIIILDEADSMTDEAQDALRVIIEQYSTTTRFCFICNYIT 154
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
KI AI+SRC+ F LD ++++L+
Sbjct: 155 KITDAIKSRCSAIYFKKLDDDCMVNKLN 182
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 60/87 (68%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE+++T RFC ICNY++KIT AI+SRC+ F LD ++++L+ + +E + ++ +
Sbjct: 137 IEQYSTTTRFCFICNYITKITDAIKSRCSAIYFKKLDDDCMVNKLNEISIKESMKLSKEI 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA 87
+ II++S+GDMRK + +LQ+ +A
Sbjct: 197 LETIIEVSNGDMRKAIMLLQNLKYLYA 223
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 13/129 (10%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP L ++ +++I + S +M+ + GT + + A+
Sbjct: 11 IEKYRPRRLQDIAQSENLIKLFKNSISKG-----EMTHFLFYGPPGTGKTSAILAMGREI 65
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS--------SYKLIILDEADAM 214
V+E NASDDRGI VR++I A S SYK+IILDEAD+M
Sbjct: 66 FKEHFPTRVIEFNASDDRGINAVREKITNEAKKYVTSISNPDGTIIPSYKIIILDEADSM 125
Query: 215 TNDAQNALR 223
T++AQ+ALR
Sbjct: 126 TDEAQDALR 134
>gi|448712798|ref|ZP_21701827.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
gi|445790224|gb|EMA40893.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
Length = 335
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 111/174 (63%), Gaps = 19/174 (10%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ R++++++LPHL+F GP GTGKTT A AR++Y + + LELNASD RGI +VR
Sbjct: 40 RLTRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVY-EDDWQENFLELNASDQRGIDVVR 98
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA + + +++I LDEADA+T+DAQ+ALRR +E+F++N RF + CNY S+I
Sbjct: 99 DRIKDFARS-SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQII 157
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTD 469
IQSRC FRF L I + +++EI E+G+ LTD
Sbjct: 158 DPIQSRCAVFRFTELTDDAIEA-----------------QVREIATEEGIELTD 194
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 103/193 (53%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F++N RF + CNY S+I IQSRC FRF L I +++ + +E + +T DG
Sbjct: 137 MEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDAIEAQVREIATEEGIELTDDG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ-- 118
A++ +DGDMRK +N LQ+AA + V+EDT+F + + RP ++E+V H
Sbjct: 197 VDALVYAADGDMRKGINGLQAAAVM-GETVDEDTVFAITST----ARPEEVEEMVDHAID 251
Query: 119 ----------------------DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
D+I + +IPE V L+ ++ +++YR+ G
Sbjct: 252 GDFTAARAALEDLLMDRGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLGEVDYRITEGA 311
Query: 150 SEKIQLSALIAAF 162
+E++QL A++A+
Sbjct: 312 NERLQLEAMLASL 324
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 109/237 (45%), Gaps = 74/237 (31%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP LD++ H++I+ + ++ D+ + + AG + + +A A
Sbjct: 20 IEKYRPERLDDIKGHENIVPRLT--------RYVEQDDLPHLMFAGPAGTGKTTAAQAI- 70
Query: 163 NSARDKLE------VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
AR+ E LELNASD RGI +VRD+I FA + + +++I LDEADA+T+
Sbjct: 71 --AREVYEDDWQENFLELNASDQRGIDVVRDRIKDFARS-SFGGYDHRIIFLDEADALTS 127
Query: 217 DAQNALRRKL---------------------PV--------------------------- 228
DAQ+ALRR + P+
Sbjct: 128 DAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDAIEAQVREIATE 187
Query: 229 -----TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY--NSVGYPTKTE 278
T DG A++ +DGDMRK +N LQ+AA + V+EDTV+ S P + E
Sbjct: 188 EGIELTDDGVDALVYAADGDMRKGINGLQAAAVM-GETVDEDTVFAITSTARPEEVE 243
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 42/64 (65%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ +++GLA D++ ++ +IPE V L+ ++ +++YR+ G +E++QL A+
Sbjct: 261 LEDLLMDRGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLGEVDYRITEGANERLQLEAM 320
Query: 516 IAAF 519
+A+
Sbjct: 321 LASL 324
>gi|448589356|ref|ZP_21649515.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
gi|445735784|gb|ELZ87332.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
Length = 329
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 96/144 (66%), Gaps = 2/144 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +I+ ++LPHLLF GP G GKTT+ A AR +Y + LELNASD RGI
Sbjct: 36 EIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD-DWRGNFLELNASDQRGI 94
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + + Y++I LDEAD++TNDAQ+ALRR +E+F+ N RF + CNY
Sbjct: 95 DVVRDRIKNFARS-SFGGHDYRIIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYS 153
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLI 435
SKI IQSRC FRF PL I
Sbjct: 154 SKIIDPIQSRCAVFRFSPLGDDAI 177
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 36/185 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL I + + + E + +T DG
Sbjct: 137 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAKAEGIELTEDG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
A++ + GDMR+ +N LQ+AAT + V+E+ ++ + + RP ++ +V
Sbjct: 197 LDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYMITST----ARPEDIETMVRDAID 251
Query: 116 -------------------SHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
+ DII + ++ E V L+ ++ + +YR++ G
Sbjct: 252 GEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWDFDLDERAAVRLMERIGEADYRISEGA 311
Query: 150 SEKIQ 154
+E++Q
Sbjct: 312 NEQVQ 316
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 101/222 (45%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
+EKYRP TLD++ ++I+ + ++ D+ + L AG + +A+
Sbjct: 20 IEKYRPQTLDDVYGQEEIVERLR--------SYIERDDLPHLLFAGPAGVGKTTSATAIA 71
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
A + LELNASD RGI +VRD+I FA + + Y++I LDEAD++TNDAQ
Sbjct: 72 RAIYGDDWRGNFLELNASDQRGIDVVRDRIKNFARS-SFGGHDYRIIFLDEADSLTNDAQ 130
Query: 220 NALRRKL---------------------PV------------------------------ 228
+ALRR + P+
Sbjct: 131 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAKAEGI 190
Query: 229 --TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
T DG A++ + GDMR+ +N LQ+AAT + V+E+ VY
Sbjct: 191 ELTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVY 231
>gi|359492415|ref|XP_003634411.1| PREDICTED: replication factor C subunit 4 [Vitis vinifera]
Length = 334
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 97/147 (65%), Gaps = 15/147 (10%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
++ PH+LFYGPPGTGKTTT LA A +L+ VLELNASDDRGI +VR +I
Sbjct: 37 LETTNCPHMLFYGPPGTGKTTTALAIAHQLFG-------VLELNASDDRGINVVRTKIKD 89
Query: 361 FASTK--TMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
FA+ + H+ YK+IILDEAD+MT DAQNALRR +E ++ RF ICNY+S
Sbjct: 90 FAAVAVGSGHRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 149
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+I + SRC +FRF PL ++ SR+
Sbjct: 150 RIIEPLASRCAKFRFKPLSEEIMSSRI 176
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 19/132 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP + + V+HQD + + + L+ ++ + L G + + +A
Sbjct: 12 VEKYRPKQVKD-VAHQDEVVRV-------LTNTLETTNCPHMLFYGPPGTGKTTTALAI- 62
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTK--TMHKSS------YKLIILDEADAM 214
A VLELNASDDRGI +VR +I FA+ + H+ YK+IILDEAD+M
Sbjct: 63 --AHQLFGVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADSM 120
Query: 215 TNDAQNALRRKL 226
T DAQNALRR +
Sbjct: 121 TEDAQNALRRTM 132
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ SR+ ++ ++E++N+ +
Sbjct: 132 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKEEELNLDSEA 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ +S GD+R+ + LQ AA
Sbjct: 192 LSTLSSISQGDLRRAITYLQGAA 214
>gi|344213231|ref|YP_004797551.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
gi|343784586|gb|AEM58563.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
Length = 407
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 97/139 (69%), Gaps = 2/139 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++ N+L H+LF GP GTGKTT A AR+LY + + LELNASD+RGI
Sbjct: 115 NIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGE-DWREHFLELNASDERGI 173
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA T + Y++I LDEADA+T+DAQ+ALRR +E+F+ NVRF + CNY
Sbjct: 174 DVVRDRIKNFART-SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYS 232
Query: 412 SKIPPAIQSRCTRFRFGPL 430
S+I IQSRC FRF PL
Sbjct: 233 SQIIDPIQSRCAVFRFSPL 251
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 28/189 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ NVRF + CNY S+I IQSRC FRF PL + + + +E + +T DG
Sbjct: 216 MEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEDIELTEDG 275
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-VSRVEKYRP----------- 108
A++ +DGDMRK +N LQ AA+ D V+E ++ + +R E+ R
Sbjct: 276 LDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFT 334
Query: 109 ---STLDELVSHQDI------------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+TLD L++ + I I +I + V ++ ++ + +YR+ G +E++
Sbjct: 335 ASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDEAAVRVLERIGETDYRITRGANERV 394
Query: 154 QLSALIAAF 162
QL A++A+
Sbjct: 395 QLEAMLASL 403
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 110/239 (46%), Gaps = 60/239 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP TLD+++ H++I+ ++ S +S + + AGT + +A+
Sbjct: 99 IEKYRPQTLDDVMGHENIVGRLKSYVSRN-----DLSHMLFSGPAGTGKTTCATAIAREL 153
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
+ LELNASD+RGI +VRD+I FA T + Y++I LDEADA+T+DAQ+AL
Sbjct: 154 YGEDWREHFLELNASDERGIDVVRDRIKNFART-SFGGVEYRIIFLDEADALTSDAQSAL 212
Query: 223 RRKL---------------------PV--------------------------------T 229
RR + P+ T
Sbjct: 213 RRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEDIELT 272
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
DG A++ +DGDMRK +N LQ AA+ D V+E VY EI +++ L+
Sbjct: 273 EDGLDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTMVQSALD 330
>gi|256053212|ref|XP_002570095.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
gi|350645477|emb|CCD59829.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Schistosoma mansoni]
Length = 362
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 108/167 (64%), Gaps = 16/167 (9%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R I+ ++LP+LLFYGPPGTGKT+ ILA AR+L+ ++ VLELNASD+RGI ++R+
Sbjct: 49 LQRCIEGSDLPNLLFYGPPGTGKTSLILALARQLFGPL-YSERVLELNASDERGISVIRE 107
Query: 357 QIFQFASTKTMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
++ FA ++ YKLIILDEAD+MT AQ ALRR +E RFC
Sbjct: 108 KVKAFAHIAVSSSTNSSGSSSTNIPPYKLIILDEADSMTAPAQAALRRTMETEMRTTRFC 167
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFN 448
+ CNY+++I I SRC +FRF PLD+ + SRL D +++S N
Sbjct: 168 LTCNYVTRIIEPITSRCAKFRFRPLDNEIARSRLRHIADAENLSITN 214
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 48/72 (66%)
Query: 9 RFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLS 68
RFC+ CNY+++I I SRC +FRF PLD+ + SRL ++ + E +++T + ++ L
Sbjct: 165 RFCLTCNYVTRIIEPITSRCAKFRFRPLDNEIARSRLRHIADAENLSITNETLDHLLSLC 224
Query: 69 DGDMRKVLNILQ 80
GD+R+ + +LQ
Sbjct: 225 HGDLRQGITMLQ 236
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 71/137 (51%), Gaps = 20/137 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP T+ E+ +++S ++ I S L +L+ + GT + + AL
Sbjct: 28 VEKYRPKTVGEVAYQTEVVSVLQRCIEGSDLPNLL-------FYGPPGTGKTSLILALAR 80
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----------YKLIILD 209
VLELNASD+RGI ++R+++ FA ++ YKLIILD
Sbjct: 81 QLFGPLYSERVLELNASDERGISVIREKVKAFAHIAVSSSTNSSGSSSTNIPPYKLIILD 140
Query: 210 EADAMTNDAQNALRRKL 226
EAD+MT AQ ALRR +
Sbjct: 141 EADSMTAPAQAALRRTM 157
>gi|268569884|ref|XP_002648361.1| C. briggsae CBR-RFC-4.2 protein [Caenorhabditis briggsae]
gi|268573696|ref|XP_002641825.1| C. briggsae CBR-RFC-4.1 protein [Caenorhabditis briggsae]
Length = 335
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 99/142 (69%), Gaps = 7/142 (4%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS 363
+LPHLLFYGPPGTGKT+T LA R+L+ + F VL+LNASD+RGI +VR +I F+
Sbjct: 47 KDLPHLLFYGPPGTGKTSTALAFCRQLFPSSIFRDRVLDLNASDERGISVVRQKIQAFSK 106
Query: 364 TKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
T T+ S+ K+IILDE DAMT +AQ A+RR+IE F+ RF +ICNY+S++ P
Sbjct: 107 T-TLGSSNKEDVLRLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPP 165
Query: 418 IQSRCTRFRFGPLDSSLIMSRL 439
+ SRC +FRF L + + + RL
Sbjct: 166 VVSRCAKFRFKSLPAEVQVQRL 187
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE F+ RF +ICNY+S++ P + SRC +FRF L + + + RL + + E ++ D
Sbjct: 143 IEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEVQVQRLRTICDAEGTPMSEDE 202
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT--AHADEVNEDTIF-----TLLVSRVEKYRPS 109
K +++ S+GD+R+ + LQS A + DE + LL+S + K PS
Sbjct: 203 LKQVMEYSEGDLRRAVCTLQSLAPILKNGDESARNCYLRGSSDALLISDLCKTLPS 258
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 77/136 (56%), Gaps = 19/136 (13%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
+++ EKYRP TLD++ +++++ ++ L+ D+ + L G + S
Sbjct: 15 VLTWTEKYRPKTLDDIAHQEEVVT--------MLKGALQGKDLPHLLFYGPPGTGKTSTA 66
Query: 159 IA----AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------YKLIIL 208
+A F S+ + VL+LNASD+RGI +VR +I F+ T T+ S+ K+IIL
Sbjct: 67 LAFCRQLFPSSIFRDRVLDLNASDERGISVVRQKIQAFSKT-TLGSSNKEDVLRLKIIIL 125
Query: 209 DEADAMTNDAQNALRR 224
DE DAMT +AQ A+RR
Sbjct: 126 DEVDAMTREAQAAMRR 141
>gi|449449767|ref|XP_004142636.1| PREDICTED: replication factor C subunit 4-like [Cucumis sativus]
Length = 336
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 93/141 (65%), Gaps = 8/141 (5%)
Query: 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS--- 363
PH+LFYGPPGTGKTTT LA A +L+ + + VLELNASDDRGI +VR +I FA
Sbjct: 43 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAV 102
Query: 364 TKTMHKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418
+ + Y K+IILDEAD+MT DAQNALRR +E + RF ICNY+S+I +
Sbjct: 103 SSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPL 162
Query: 419 QSRCTRFRFGPLDSSLIMSRL 439
SRC +FRF PL ++ R+
Sbjct: 163 ASRCAKFRFKPLSEEVMSKRI 183
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 20/136 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + + V+HQD + + + L+ ++ + L G + + +A
Sbjct: 12 VEKYRPKQVKD-VAHQDEVVRV-------LTNTLETANCPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS---TKTMHKSSY-----KLIILDE 210
F K VLELNASDDRGI +VR +I FA + + Y K+IILDE
Sbjct: 64 HQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDE 123
Query: 211 ADAMTNDAQNALRRKL 226
AD+MT DAQNALRR +
Sbjct: 124 ADSMTEDAQNALRRTM 139
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF ICNY+S+I + SRC +FRF PL ++ R+ ++ +E +++ +
Sbjct: 139 METHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHIGNEEGLSLDGEA 198
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ +S GD+R+ + LQSAA
Sbjct: 199 LSTLSSISQGDLRRAITYLQSAA 221
>gi|154341867|ref|XP_001566885.1| putative replication factor C, subunit 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064210|emb|CAM40408.1| putative replication factor C, subunit 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 296
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 96/150 (64%), Gaps = 14/150 (9%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
+PH LF+GPPGTGKTT+ILA A +L+ + V ELNASDDRGI +VR+++ FA
Sbjct: 1 MPHFLFHGPPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGA 60
Query: 366 TMHKSS--------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
S +KLIILDEADA+ DAQ ALRR++E F+ RFCI+CNY+
Sbjct: 61 VSSNGSSVTQSDGKVYPVPPFKLIILDEADALLPDAQGALRRMMEDFSDVTRFCILCNYV 120
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
S+I I SRC ++RF PL S + R++Y
Sbjct: 121 SRIIDPIASRCAKYRFKPLVKSALYHRIEY 150
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 68/118 (57%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ RFCI+CNY+S+I I SRC ++RF PL S + R++YV + E + ++P
Sbjct: 104 MEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPAS 163
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ 118
+A+ +S GD+R + LQSA A+ +++ ++ ++ S + L SH+
Sbjct: 164 LQALDTVSGGDLRLAIMHLQSAQKANGNDLTKEDFISVSGSVPADVMQRYISALFSHR 221
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 40/70 (57%), Gaps = 14/70 (20%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSS--------------YKLIILDEADAMTN 216
V ELNASDDRGI +VR+++ FA S +KLIILDEADA+
Sbjct: 35 VRELNASDDRGINVVREKVKIFAQGAVSSNGSSVTQSDGKVYPVPPFKLIILDEADALLP 94
Query: 217 DAQNALRRKL 226
DAQ ALRR +
Sbjct: 95 DAQGALRRMM 104
>gi|150403344|ref|YP_001330638.1| replication factor C small subunit [Methanococcus maripaludis C7]
gi|166225156|sp|A6VJ61.1|RFCS_METM7 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150034374|gb|ABR66487.1| Replication factor C [Methanococcus maripaludis C7]
Length = 315
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 101/148 (68%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++++ +PHLLF G PG GKTT LA A+ LY + + LELN+SD+RGI
Sbjct: 22 EIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGET-WRENFLELNSSDERGI 80
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ FA TK + + +K+I LDE+DA+T+DAQNALRR +EK++ RF + CNY
Sbjct: 81 DVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYP 140
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI P IQSRC FRF PL + ++ L
Sbjct: 141 SKIIPPIQSRCAIFRFSPLKTEDLVENL 168
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 28/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RF + CNY SKI P IQSRC FRF PL + ++ L + E+E + + G
Sbjct: 124 MEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKENLTLEKGG 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------------------LV 100
AII +S+GDMRK +N+LQ+AA A +D V E+ ++ + V
Sbjct: 184 IDAIIYVSEGDMRKAINVLQTAA-AVSDTVTEEIVYKVASKARPDEIKKMTQLALNGKFV 242
Query: 101 SRVEKYRPSTLDELVSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
E+ +D +S +DI + ++I E V LV + + ++R+ G++E+I
Sbjct: 243 ESREQLYNLMIDWGMSGEDILIQIFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERI 302
Query: 154 QLSALIA 160
QLSAL+A
Sbjct: 303 QLSALLA 309
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 107/241 (44%), Gaps = 63/241 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLK--MSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL E+V H +II L + V K M + + + G + AL
Sbjct: 6 VEKYRPQTLSEVVGHHEIIKR-------LTNYVEKKSMPHLLFSGSPGVGKTTAALALAK 58
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELN+SD+RGI ++R ++ FA TK + + +K+I LDE+DA+T+DAQN
Sbjct: 59 DLYGETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQN 118
Query: 221 ALRRKLPVTPD------------------------------------------------- 231
ALRR + D
Sbjct: 119 ALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKENLT 178
Query: 232 ----GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
G AII +S+GDMRK +N+LQ+AA A +D V E+ VY EI + + L
Sbjct: 179 LEKGGIDAIIYVSEGDMRKAINVLQTAA-AVSDTVTEEIVYKVASKARPDEIKKMTQLAL 237
Query: 288 N 288
N
Sbjct: 238 N 238
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 461 IEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
I+ G++ DIL +I V L+I E V LV + + ++R+ G++E+IQLSAL+A
Sbjct: 253 IDWGMSGEDILIQIFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQLSALLA 309
>gi|55379214|ref|YP_137064.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
gi|55231939|gb|AAV47358.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
Length = 345
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 96/139 (69%), Gaps = 2/139 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++ N+L H+LF GP GTGKTT A AR+LY + LELNASD+RGI
Sbjct: 53 NIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGD-DWREHFLELNASDERGI 111
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA T + Y++I LDEADA+T+DAQ+ALRR +E+F+ NVRF + CNY
Sbjct: 112 DVVRDRIKNFART-SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYS 170
Query: 412 SKIPPAIQSRCTRFRFGPL 430
S+I IQSRC FRF PL
Sbjct: 171 SQIIDPIQSRCAVFRFSPL 189
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 28/189 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ NVRF + CNY S+I IQSRC FRF PL + + + +E + +T DG
Sbjct: 154 MEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDG 213
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-VSRVEKYRP----------- 108
A++ +DGDMRK +N LQ AA+ D V+E ++ + +R E+ R
Sbjct: 214 LDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFT 272
Query: 109 ---STLDELVSHQDI------------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+TLD L++ + I I +I + V ++ ++ + +YR+ G +E++
Sbjct: 273 ASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDDAAVRVLERIGETDYRITRGANERV 332
Query: 154 QLSALIAAF 162
QL A++A+
Sbjct: 333 QLEAMLASL 341
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 109/239 (45%), Gaps = 60/239 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP TLD+++ H++I+ ++ S +S + + AGT + +A+
Sbjct: 37 IEKYRPQTLDDVMGHENIVGRLKSYVSRN-----DLSHMLFSGPAGTGKTTCATAIAREL 91
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
+ LELNASD+RGI +VRD+I FA T + Y++I LDEADA+T+DAQ+AL
Sbjct: 92 YGDDWREHFLELNASDERGIDVVRDRIKNFART-SFGGVEYRIIFLDEADALTSDAQSAL 150
Query: 223 RRKL-----------------------------------------------------PVT 229
RR + +T
Sbjct: 151 RRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELT 210
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
DG A++ +DGDMRK +N LQ AA+ D V+E VY EI +++ L+
Sbjct: 211 EDGLDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTMVQSALD 268
>gi|302925691|ref|XP_003054145.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735086|gb|EEU48432.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 314
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/142 (50%), Positives = 98/142 (69%), Gaps = 10/142 (7%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH 368
+LFYGPPGTGKT+T+LA A++LY + VLELNASD+RGI IVR+++ FA + +
Sbjct: 1 MLFYGPPGTGKTSTVLALAKELYGPEMIKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 369 KSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418
S +K+IILDEAD+MT DAQ+ALRR +E ++ RFC+ICNY+++I +
Sbjct: 61 PSPGYKDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 120
Query: 419 QSRCTRFRFGPLDSSLIMSRLD 440
SRC++FRF LD S RL+
Sbjct: 121 ASRCSKFRFKSLDQSNAKKRLE 142
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 12/138 (8%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD S RL+ + E+E V +
Sbjct: 97 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQSNAKKRLEEIAEKEGVPLEDGA 156
Query: 61 KKAIIDLSDGDMRKVLNILQSAA---TAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH 117
+I S+GD+RK + LQSAA A E + D T+ V + + ++V
Sbjct: 157 VDTLIKCSEGDLRKAITFLQSAARLVGAGTPEKDADGADTMDVD-----KKAVTVKIV-- 209
Query: 118 QDIISTIEIPESMLVDLV 135
+DI IPES + DLV
Sbjct: 210 EDIAGV--IPESTIEDLV 225
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 10/69 (14%)
Query: 168 KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIILDEADAMTND 217
K VLELNASD+RGI IVR+++ FA + + S +K+IILDEAD+MT D
Sbjct: 29 KSRVLELNASDERGISIVREKVKNFARMQLTNPSPGYKDKYPCPPFKIIILDEADSMTQD 88
Query: 218 AQNALRRKL 226
AQ+ALRR +
Sbjct: 89 AQSALRRTM 97
>gi|294496335|ref|YP_003542828.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
gi|292667334|gb|ADE37183.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
Length = 318
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 95/147 (64%), Gaps = 1/147 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ +I N LPHLLF GPPG GKT T ++ AR+L+ + ELNASD+RGI
Sbjct: 23 DAIERLRSYIKTNNLPHLLFSGPPGVGKTATAVSIARELFGD-DWRENFTELNASDERGI 81
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR +I FA T + + +K+I LDEADA+T DAQ+ALRR +E++T N RF + CNY
Sbjct: 82 DVVRTKIKNFAKTSPIGGADFKIIFLDEADALTPDAQSALRRTMERYTNNCRFILSCNYS 141
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSR 438
SKI IQSRC +RF PL I R
Sbjct: 142 SKIIEPIQSRCAVYRFRPLSDDAIGKR 168
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 99/186 (53%), Gaps = 26/186 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E++T N RF + CNY SKI IQSRC +RF PL I R ++ E+E +++ DG
Sbjct: 125 MERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAIGKRCRHIAEKEGLDIADDG 184
Query: 61 KKAIIDLSDGDMRKVLNILQSA----------------ATAHADEVN---EDTIFTLLVS 101
+AI +++GDMRK +N +Q+A ATAH +E+ E + +S
Sbjct: 185 IEAIKYVAEGDMRKAINAVQAASMFDTSIHADSIYRITATAHPEEIKALLESALGGNFIS 244
Query: 102 RVEKYRPSTLDELVSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
+K + +S +D++ + +IP LV +V + +I++R+ G E+IQ
Sbjct: 245 SRKKLDDLMVSRGLSGEDVVGQVYRSLFDLDIPARKLVSIVDVLGEIDFRITEGADERIQ 304
Query: 155 LSALIA 160
L AL+A
Sbjct: 305 LDALLA 310
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 103/245 (42%), Gaps = 71/245 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP L+++V D I + +K +++ + L +G + A
Sbjct: 7 IEKYRPYRLEDVVGQSDAIERLR--------SYIKTNNLPHLLFSGPP---GVGKTATAV 55
Query: 163 NSARD------KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
+ AR+ + ELNASD+RGI +VR +I FA T + + +K+I LDEADA+T
Sbjct: 56 SIARELFGDDWRENFTELNASDERGIDVVRTKIKNFAKTSPIGGADFKIIFLDEADALTP 115
Query: 217 DAQNALRR---------------------------------------------------- 224
DAQ+ALRR
Sbjct: 116 DAQSALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAIGKRCRHIAEK 175
Query: 225 -KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
L + DG +AI +++GDMRK +N +Q AA+ ++ D++Y EI +L
Sbjct: 176 EGLDIADDGIEAIKYVAEGDMRKAINAVQ-AASMFDTSIHADSIYRITATAHPEEIKALL 234
Query: 284 RWLLN 288
L
Sbjct: 235 ESALG 239
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 448 NIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTS 507
N I K+ ++ + +GL+ D++ ++ + L+IP LV +V + +I++R+ G
Sbjct: 241 NFISSRKKLDDLMVSRGLSGEDVVGQVYRSLFDLDIPARKLVSIVDVLGEIDFRITEGAD 300
Query: 508 EKIQLSALIA 517
E+IQL AL+A
Sbjct: 301 ERIQLDALLA 310
>gi|448498600|ref|ZP_21610886.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
gi|445698349|gb|ELZ50394.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
Length = 327
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 96/139 (69%), Gaps = 2/139 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +I ++++PHLLF GP G GKTT A AR++Y + + LELNASD RGI
Sbjct: 35 EIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYGEDNWRGNFLELNASDQRGI 94
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA ++ ++++ LDEAD++T+DAQ+ALRR +E+F+ N RF + CNY
Sbjct: 95 DVVRDRIKGFA--RSSFGGDFRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYS 152
Query: 412 SKIPPAIQSRCTRFRFGPL 430
SKI IQSRC FRF PL
Sbjct: 153 SKIIDPIQSRCAVFRFSPL 171
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 94/181 (51%), Gaps = 28/181 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL + + + E++ VT G
Sbjct: 136 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVSGMVREIAAAEEIEVTDAG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLV-SRVEKYRP----------- 108
A++ +DGDMR+ +N LQ+AAT D V+E ++ + +R E+
Sbjct: 196 VDALVYAADGDMRRAINSLQAAATT-GDVVDEKAVYAITATARPEEIESMVTDALSGDFA 254
Query: 109 ---STLDELVSH-----QDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
STLD L++ D+I + ++ E V L+ ++ + +YR+A G +E++
Sbjct: 255 RARSTLDTLLTETGMAGGDVIDQLHRSVWEFDLSEREAVRLMERIGEADYRIAEGANEQV 314
Query: 154 Q 154
Q
Sbjct: 315 Q 315
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 114/261 (43%), Gaps = 79/261 (30%)
Query: 80 QSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMS 139
Q+AATA E+ +EKYRP TLD++ ++I+ ++ +
Sbjct: 7 QAAATATGREI-----------WIEKYRPQTLDDVHGQEEIVERLQ--------SYIAQD 47
Query: 140 DIEYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST 195
D+ + L +G + + +A A + + LELNASD RGI +VRD+I FA
Sbjct: 48 DVPHLLFSGPAGIGKTTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFA-- 105
Query: 196 KTMHKSSYKLIILDEADAMTNDAQNALRR------------------------------- 224
++ ++++ LDEAD++T+DAQ+ALRR
Sbjct: 106 RSSFGGDFRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAV 165
Query: 225 ----------------------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEV 262
++ VT G A++ +DGDMR+ +N LQ+AAT D V
Sbjct: 166 FRFSPLSDEAVSGMVREIAAAEEIEVTDAGVDALVYAADGDMRRAINSLQAAATT-GDVV 224
Query: 263 NEDTVYNSVGYPTKTEITNIL 283
+E VY EI +++
Sbjct: 225 DEKAVYAITATARPEEIESMV 245
>gi|311977891|ref|YP_003987011.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|81999791|sp|Q5UP47.1|RFCS3_MIMIV RecName: Full=Putative replication factor C small subunit L499;
Short=RFC small subunit L499; AltName: Full=Clamp loader
small subunit L499
gi|55417114|gb|AAV50764.1| putative replication factor C [Acanthamoeba polyphaga mimivirus]
gi|308204440|gb|ADO18241.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|339061437|gb|AEJ34741.1| putative replication factor C [Acanthamoeba polyphaga mimivirus]
gi|351737656|gb|AEQ60691.1| putative replication factor C small subunit [Acanthamoeba
castellanii mamavirus]
gi|398257325|gb|EJN40933.1| putative replication factor C [Acanthamoeba polyphaga
lentillevirus]
Length = 344
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 102/154 (66%), Gaps = 7/154 (4%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + +FI+ LPHLLF+GP G+GKT+TI CAR++Y K N M+LELNAS++RGI
Sbjct: 36 DIILSLKKFIESRTLPHLLFFGPSGSGKTSTIKCCAREIYGK-YINYMILELNASNERGI 94
Query: 352 GIVRDQIFQFASTKTM------HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
VR +I F S+K+ + +KL+ILDE D+MT +AQ LR+ IEK + RFC
Sbjct: 95 ETVRTKIKNFVSSKSSIFLPMGVRDIFKLVILDEIDSMTVEAQGMLRQTIEKNSGTTRFC 154
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+ICN + KI A+QSRC FRF PL+ + RL
Sbjct: 155 LICNDIDKINIALQSRCASFRFSPLNELDMHGRL 188
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK + RFC+ICN + KI A+QSRC FRF PL+ + RL + E V +
Sbjct: 144 IEKNSGTTRFCLICNDIDKINIALQSRCASFRFSPLNELDMHGRLSDICRLEGVKYEKEA 203
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
+II +S GDMR +N LQ +N + ++ +
Sbjct: 204 INSIIKISKGDMRSAINTLQHVNLVIGGSINTEDVYKI 241
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 13/131 (9%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE-IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
VEKYRP +D ++S++DII +++ ES + +L + +G+ + +
Sbjct: 20 VEKYRPQEIDHIISNRDIILSLKKFIESRTLPHLL------FFGPSGSGKTSTIKCCARE 73
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTM------HKSSYKLIILDEADAMT 215
+LELNAS++RGI VR +I F S+K+ + +KL+ILDE D+MT
Sbjct: 74 IYGKYINYMILELNASNERGIETVRTKIKNFVSSKSSIFLPMGVRDIFKLVILDEIDSMT 133
Query: 216 NDAQNALRRKL 226
+AQ LR+ +
Sbjct: 134 VEAQGMLRQTI 144
>gi|340623615|ref|YP_004742068.1| replication factor C small subunit [Methanococcus maripaludis X1]
gi|339903883|gb|AEK19325.1| replication factor C small subunit [Methanococcus maripaludis X1]
Length = 315
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 101/148 (68%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++++ +PHLLF G PG GKTT LA A+ LY + + LELN+SD+RGI
Sbjct: 22 EIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGET-WRENFLELNSSDERGI 80
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ FA TK + + +K+I LDE+DA+T+DAQNALRR +EK++ RF + CNY
Sbjct: 81 DVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYP 140
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI P IQSRC FRF PL + ++ L
Sbjct: 141 SKIIPPIQSRCAIFRFSPLKTEDLVENL 168
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 103/187 (55%), Gaps = 28/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RF + CNY SKI P IQSRC FRF PL + ++ L + E+E +N+ G
Sbjct: 124 MEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLEKGG 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------------------LV 100
AII +S+GDMRK +N+LQ+AA A +DE+ E+ ++ + V
Sbjct: 184 IDAIIYVSEGDMRKAINVLQTAA-AVSDEITEEIVYKVASKARPDEIKKMTQLALNGKFV 242
Query: 101 SRVEKYRPSTLDELVSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
E+ +D +S +DI + ++I E V LV + + ++R+ G++E+I
Sbjct: 243 EAREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERI 302
Query: 154 QLSALIA 160
QLSAL+A
Sbjct: 303 QLSALLA 309
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 108/241 (44%), Gaps = 63/241 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLK--MSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL E+V H +II L + V K M + + + G + AL
Sbjct: 6 VEKYRPETLSEVVGHHEIIKR-------LTNYVEKKSMPHLLFSGSPGVGKTTAALALAK 58
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELN+SD+RGI ++R ++ FA TK + + +K+I LDE+DA+T+DAQN
Sbjct: 59 DLYGETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQN 118
Query: 221 ALRRKLPVTPD------------------------------------------------- 231
ALRR + D
Sbjct: 119 ALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLN 178
Query: 232 ----GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
G AII +S+GDMRK +N+LQ+AA A +DE+ E+ VY EI + + L
Sbjct: 179 LEKGGIDAIIYVSEGDMRKAINVLQTAA-AVSDEITEEIVYKVASKARPDEIKKMTQLAL 237
Query: 288 N 288
N
Sbjct: 238 N 238
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 461 IEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
I+ G++ DIL ++ V L+I E V LV + + ++R+ G++E+IQLSAL+A
Sbjct: 253 IDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQLSALLA 309
>gi|229582086|ref|YP_002840485.1| replication factor C small subunit [Sulfolobus islandicus
Y.N.15.51]
gi|228012802|gb|ACP48563.1| Replication factor C [Sulfolobus islandicus Y.N.15.51]
Length = 330
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/146 (49%), Positives = 95/146 (65%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ +F+ E +PHLLF GP GTGKTT LA LY + LELNASD+RGI ++R
Sbjct: 31 RLKKFVKEKNMPHLLFAGPSGTGKTTAALALVHDLYGD-NYVEYFLELNASDERGIDVIR 89
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T +K+++LDEAD MT DAQ ALRR +E +T N RF + CNYLSKI
Sbjct: 90 NKVKEFARTVIPSNVPFKVVLLDEADNMTADAQQALRRTMELYTENTRFILACNYLSKII 149
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSR FRF PL +++RL Y
Sbjct: 150 EPIQSRTALFRFYPLKKEDVVNRLVY 175
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 93/187 (49%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T N RF + CNYLSKI IQSR FRF PL +++RL Y+ + EK
Sbjct: 129 MELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNEKAEYDQKA 188
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNEDTIFTL---LVSR 102
+ I D++ GDMRK +NILQ+A+ A EV E L
Sbjct: 189 LETIYDITMGDMRKSINILQAASAYGKISVEAVFKVLGLAQPKEVREMISLALQGKFTQA 248
Query: 103 VEKYRPSTLDELVSHQDII---------STIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
EK R + +S +DII S ++I E + V L+ + + E+R+ G ++I
Sbjct: 249 REKLRTLLVTYGLSGEDIIKQIHREITSSELQISEELRVLLLDYIGETEFRIIEGADDEI 308
Query: 154 QLSALIA 160
QLSAL+A
Sbjct: 309 QLSALLA 315
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 66/241 (27%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP TLD++V+ ++II ++ +K ++ + L AG S + +A +A +
Sbjct: 12 EKYRPRTLDDIVNQREIIDRLK--------KFVKEKNMPHLLFAGPSGTGKTTAALALVH 63
Query: 164 SARDKLEV---LELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
V LELNASD+RGI ++R+++ +FA T +K+++LDEAD MT DAQ
Sbjct: 64 DLYGDNYVEYFLELNASDERGIDVIRNKVKEFARTVIPSNVPFKVVLLDEADNMTADAQQ 123
Query: 221 ALRRKLPVTPDGKKAII------------------------------------------- 237
ALRR + + + + I+
Sbjct: 124 ALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNEKAE 183
Query: 238 ----------DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
D++ GDMRK +NILQ AA+A+ +++ + V+ +G E+ ++ L
Sbjct: 184 YDQKALETIYDITMGDMRKSINILQ-AASAYG-KISVEAVFKVLGLAQPKEVREMISLAL 241
Query: 288 N 288
Sbjct: 242 Q 242
>gi|330921788|ref|XP_003299563.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1]
gi|311326698|gb|EFQ92339.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1]
Length = 418
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 105/169 (62%), Gaps = 26/169 (15%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
++R + + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR
Sbjct: 57 LSRTMQSSNLPHMLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVRQ 116
Query: 357 QIFQFASTK----------TMHKSS----------------YKLIILDEADAMTNDAQNA 390
++ FA + KSS +K+I+LDEAD+MT DAQ+A
Sbjct: 117 KVKDFARQQLSVAPNYNIMVEDKSSGEAKTVRYRDKYPCPPFKIIVLDEADSMTQDAQSA 176
Query: 391 LRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
LRR +E ++ RFC++CNY+++I + SRC++FRF LD + R+
Sbjct: 177 LRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVKRV 225
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 54/83 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF LD + R+ + + E V++ D
Sbjct: 181 METYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVKRVSDIAKLENVSLEDDV 240
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++ ++DGD+RK + LQSAA
Sbjct: 241 AEELVRVADGDLRKAITFLQSAA 263
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 79/154 (51%), Gaps = 38/154 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL E V+ QD +TI+I + ++ S++ + L G + S ++A
Sbjct: 36 VEKYRPKTLSE-VTAQD--NTIQI-----LSRTMQSSNLPHMLFYGPPGTGKTSTILALA 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK----------TMHKSS------ 202
+ K VLELNASD+RGI IVR ++ FA + KSS
Sbjct: 88 KELYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPNYNIMVEDKSSGEAKTV 147
Query: 203 ----------YKLIILDEADAMTNDAQNALRRKL 226
+K+I+LDEAD+MT DAQ+ALRR +
Sbjct: 148 RYRDKYPCPPFKIIVLDEADSMTQDAQSALRRTM 181
>gi|134046237|ref|YP_001097722.1| replication factor C small subunit [Methanococcus maripaludis C5]
gi|166225155|sp|A4FZ74.1|RFCS_METM5 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|132663862|gb|ABO35508.1| replication factor C small subunit [Methanococcus maripaludis C5]
Length = 315
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 104/154 (67%), Gaps = 3/154 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++++ +PHLLF G PG GKTT LA A+ LY + + LELN+SD+RGI
Sbjct: 22 EIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGET-WRENFLELNSSDERGI 80
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ FA TK + + +K+I LDE+DA+T+DAQNALRR +EK++ RF + CNY
Sbjct: 81 DVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYP 140
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDIS 445
SKI P IQSRC FRF PL + ++ L DIS
Sbjct: 141 SKIIPPIQSRCAIFRFSPLKTEDLVENL--KDIS 172
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 28/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RF + CNY SKI P IQSRC FRF PL + ++ L + E+E + + G
Sbjct: 124 MEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKGG 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------------------LV 100
AII +S+GDMRK +N+LQ+AA A +D V E+ ++ + V
Sbjct: 184 IDAIIYVSEGDMRKAINVLQTAA-AVSDTVTEEIVYKVASKARPDEIKKMTHLALNGKFV 242
Query: 101 SRVEKYRPSTLDELVSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
E+ +D +S +DI + ++I E V LV + + ++R+ G++E+I
Sbjct: 243 EAKEQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERI 302
Query: 154 QLSALIA 160
QLSAL+A
Sbjct: 303 QLSALLA 309
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 108/241 (44%), Gaps = 63/241 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLK--MSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL E+V H +II L + V K M + + + G + AL
Sbjct: 6 VEKYRPETLPEVVGHHEIIKR-------LTNYVEKKSMPHLLFSGSPGVGKTTAALALAK 58
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELN+SD+RGI ++R ++ FA TK + + +K+I LDE+DA+T+DAQN
Sbjct: 59 DLYGETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQN 118
Query: 221 ALRRKL---------------------PV-------------TPDGKKAIIDLS------ 240
ALRR + P+ T D + + D+S
Sbjct: 119 ALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLT 178
Query: 241 -------------DGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+GDMRK +N+LQ+AA A +D V E+ VY EI + L
Sbjct: 179 LEKGGIDAIIYVSEGDMRKAINVLQTAA-AVSDTVTEEIVYKVASKARPDEIKKMTHLAL 237
Query: 288 N 288
N
Sbjct: 238 N 238
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 461 IEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
I+ G++ DIL ++ V L+I E V LV + + ++R+ G++E+IQLSAL+A
Sbjct: 253 IDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQLSALLA 309
>gi|448531306|ref|ZP_21620993.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
gi|445707263|gb|ELZ59121.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
Length = 327
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 96/139 (69%), Gaps = 2/139 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +I ++++PHLLF GP G GKTT A AR++Y + + LELNASD RGI
Sbjct: 35 EIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYGEDNWRGNFLELNASDQRGI 94
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA ++ ++++ LDEAD++T+DAQ+ALRR +E+F+ N RF + CNY
Sbjct: 95 DVVRDRIKGFA--RSSFGGDFRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYS 152
Query: 412 SKIPPAIQSRCTRFRFGPL 430
SKI IQSRC FRF PL
Sbjct: 153 SKIIDPIQSRCAVFRFSPL 171
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 28/181 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL + + + E + VT +G
Sbjct: 136 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEDIEVTDEG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLV-SRVEKYRP----------- 108
A++ +DGDMR+ +N LQ+AAT D V+E+ ++ + +R E+
Sbjct: 196 IDALVYAADGDMRRAINSLQAAATT-GDVVDEEAVYAITATARPEEIESMVTDALNGDFA 254
Query: 109 ---STLDELVSH-----QDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
STLD L++ D+I + E+ E V L+ ++ + +YR+A G +E++
Sbjct: 255 RARSTLDTLLTETGMAGGDVIDQLHRSVWEFELSEREAVRLMERIGEADYRIAEGANEQV 314
Query: 154 Q 154
Q
Sbjct: 315 Q 315
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 116/266 (43%), Gaps = 79/266 (29%)
Query: 80 QSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMS 139
Q+AATA E+ +EKYRP TLD++ +I+ ++ +
Sbjct: 7 QTAATATGREI-----------WIEKYRPQTLDDIHGQSEIVERLQ--------SYIAQD 47
Query: 140 DIEYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST 195
D+ + L +G + + +A A + + LELNASD RGI +VRD+I FA
Sbjct: 48 DVPHLLFSGPAGIGKTTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFA-- 105
Query: 196 KTMHKSSYKLIILDEADAMTNDAQNALRRKL----------------------------- 226
++ ++++ LDEAD++T+DAQ+ALRR +
Sbjct: 106 RSSFGGDFRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAV 165
Query: 227 ------------------------PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEV 262
VT +G A++ +DGDMR+ +N LQ+AAT D V
Sbjct: 166 FRFSPLSDEAVGGMVREIAAAEDIEVTDEGIDALVYAADGDMRRAINSLQAAATT-GDVV 224
Query: 263 NEDTVYNSVGYPTKTEITNILRWLLN 288
+E+ VY EI +++ LN
Sbjct: 225 DEEAVYAITATARPEEIESMVTDALN 250
>gi|448434836|ref|ZP_21586534.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
gi|445684459|gb|ELZ36835.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
Length = 327
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 96/139 (69%), Gaps = 2/139 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +I ++++PHLLF GP G GKTT A AR++Y + + LELNASD RGI
Sbjct: 35 EIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYGEDNWRGNFLELNASDQRGI 94
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA ++ ++++ LDEAD++T+DAQ+ALRR +E+F+ N RF + CNY
Sbjct: 95 DVVRDRIKGFA--RSSFGGDFRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYS 152
Query: 412 SKIPPAIQSRCTRFRFGPL 430
SKI IQSRC FRF PL
Sbjct: 153 SKIIDPIQSRCAVFRFSPL 171
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 28/181 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL + + + E + VT +G
Sbjct: 136 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEDIEVTDEG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLV-SRVEKYRP----------- 108
A++ +DGDMR+ +N LQ+AAT D V+E+ ++ + +R E+
Sbjct: 196 IDALVYAADGDMRRAINSLQAAATT-GDVVDEEAVYAITATARPEEIESMVTDALNGDFA 254
Query: 109 ---STLDELVSH-----QDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
STLD L++ D+I + E+ E V L+ ++ + +YR+A G +E++
Sbjct: 255 RARSTLDTLLTETGMAGGDVIDQLHRSVWEFELSEREAVRLMERIGEADYRIAEGANEQV 314
Query: 154 Q 154
Q
Sbjct: 315 Q 315
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 117/266 (43%), Gaps = 79/266 (29%)
Query: 80 QSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMS 139
Q+AATA E+ +EKYRP TLD++ ++I+ ++ +
Sbjct: 7 QTAATATGREI-----------WIEKYRPQTLDDIHGQEEIVERLQ--------SYIAQD 47
Query: 140 DIEYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST 195
D+ + L +G + + +A A + + LELNASD RGI +VRD+I FA
Sbjct: 48 DVPHLLFSGPAGIGKTTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFA-- 105
Query: 196 KTMHKSSYKLIILDEADAMTNDAQNALRRKL----------------------------- 226
++ ++++ LDEAD++T+DAQ+ALRR +
Sbjct: 106 RSSFGGDFRIVFLDEADSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAV 165
Query: 227 ------------------------PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEV 262
VT +G A++ +DGDMR+ +N LQ+AAT D V
Sbjct: 166 FRFSPLSDEAVGGMVREIAAAEDIEVTDEGIDALVYAADGDMRRAINSLQAAATT-GDVV 224
Query: 263 NEDTVYNSVGYPTKTEITNILRWLLN 288
+E+ VY EI +++ LN
Sbjct: 225 DEEAVYAITATARPEEIESMVTDALN 250
>gi|13242652|ref|NP_077667.1| EsV-1-182 [Ectocarpus siliculosus virus 1]
gi|13177452|gb|AAK14596.1|AF204951_181 EsV-1-182 [Ectocarpus siliculosus virus 1]
Length = 326
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/140 (52%), Positives = 94/140 (67%), Gaps = 4/140 (2%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA- 362
+LPHLLF+GPPGTGKT+TILA AR L + VLELNASD+RG+ +VRD+I F+
Sbjct: 33 GDLPHLLFHGPPGTGKTSTILALARTLLGEGNMRERVLELNASDERGLDVVRDKIKTFSK 92
Query: 363 ---STKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
S+ +KL+ILDEAD MT DAQ+ALRR +E + RFC++CNY+SKI +
Sbjct: 93 MSISSFQPGCPPFKLVILDEADTMTADAQSALRRTMETHSVVTRFCLVCNYVSKIIAPLA 152
Query: 420 SRCTRFRFGPLDSSLIMSRL 439
SRC +FRF L + RL
Sbjct: 153 SRCAKFRFSTLAPKSMKGRL 172
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 20/134 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG------TSEKIQLS 156
VEKYRP + ++V H + + E K D+ + L G TS + L+
Sbjct: 5 VEKYRPRRVRDVVHHDHLKRVLNGAE--------KTGDLPHLLFHGPPGTGKTSTILALA 56
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFA----STKTMHKSSYKLIILDEAD 212
+ + R++ VLELNASD+RG+ +VRD+I F+ S+ +KL+ILDEAD
Sbjct: 57 RTLLGEGNMRER--VLELNASDERGLDVVRDKIKTFSKMSISSFQPGCPPFKLVILDEAD 114
Query: 213 AMTNDAQNALRRKL 226
MT DAQ+ALRR +
Sbjct: 115 TMTADAQSALRRTM 128
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 18/158 (11%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKV---NVT 57
+E + RFC++CNY+SKI + SRC +FRF L + RL ++ E+E + N +
Sbjct: 128 METHSVVTRFCLVCNYVSKIIAPLASRCAKFRFSTLAPKSMKGRLLHICERENIIFENCS 187
Query: 58 PDGKKAIIDLSDGDMRKVLNILQSAATAH----------ADEVNEDTIFTLLVSRVEKYR 107
AI+ S GDMR +N+LQ+ + A EV E +F +L S V +
Sbjct: 188 RSVLDAIVKSSRGDMRSAVNLLQTVSQQPRVTPESIVEIAGEVPE-RVFDMLWSAVTS-Q 245
Query: 108 PSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL 145
P + D +ST + E V VL S+I+ R+
Sbjct: 246 PRQPGHFEAVTDAVSTF-VGEGYPVGKVL--SEIQGRV 280
>gi|241829143|ref|XP_002414742.1| replication factor C, subunit RFC4, putative [Ixodes scapularis]
gi|215508954|gb|EEC18407.1| replication factor C, subunit RFC4, putative [Ixodes scapularis]
Length = 363
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 130/214 (60%), Gaps = 33/214 (15%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA-- 362
+LP+LLFYGPPGTGKT+TILA +R+L+ + + +LELNASD+RGI +VR++I F+
Sbjct: 65 DLPNLLFYGPPGTGKTSTILALSRELFGD-MYKSRILELNASDERGIQVVREKIKNFSQL 123
Query: 363 ---STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
+T+ + +K++ILDEAD+MT AQ ALRR +EK T RFC+ICNY+S+I
Sbjct: 124 TANATRPDGRPCPPFKIVILDEADSMTPSAQAALRRTMEKQTKTTRFCLICNYISRIIEP 183
Query: 418 IQSRCTRFRFGPLDSSLIMSRL-----------DYDDISFFNIIIWYIKIQEIKIEKGLA 466
+ SRC++FRF PL +++ RL D + I FF + K
Sbjct: 184 LTSRCSKFRFKPLPKDILLERLQKICTAENVQCDDEAILFFFFL------------KSAC 231
Query: 467 LTDILTEISLL--VHRLEIPESMLVDLVLKMSDI 498
L D+ I+L V RL++ E +L + V +++ I
Sbjct: 232 LGDMRRAITLFQSVSRLKLGEPVLTEDVAEVACI 265
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 12/134 (8%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP T+D+ V+HQD + ++ + DL ++ + GT + + AL
Sbjct: 33 VPWVEKYRPKTVDD-VAHQDEVVSVLKKSLLGADL----PNLLFYGPPGTGKTSTILALS 87
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLIILDEAD 212
K +LELNASD+RGI +VR++I F+ +T+ + +K++ILDEAD
Sbjct: 88 RELFGDMYKSRILELNASDERGIQVVREKIKNFSQLTANATRPDGRPCPPFKIVILDEAD 147
Query: 213 AMTNDAQNALRRKL 226
+MT AQ ALRR +
Sbjct: 148 SMTPSAQAALRRTM 161
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 11/90 (12%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK T RFC+ICNY+S+I + SRC++FRF PL +++ RL + E V +
Sbjct: 161 MEKQTKTTRFCLICNYISRIIEPLTSRCSKFRFKPLPKDILLERLQKICTAENVQCDDEA 220
Query: 61 -------KKAIIDLSDGDMRKVLNILQSAA 83
K A + GDMR+ + + QS +
Sbjct: 221 ILFFFFLKSACL----GDMRRAITLFQSVS 246
>gi|302808211|ref|XP_002985800.1| hypothetical protein SELMODRAFT_123078 [Selaginella moellendorffii]
gi|300146307|gb|EFJ12977.1| hypothetical protein SELMODRAFT_123078 [Selaginella moellendorffii]
Length = 345
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 97/155 (62%), Gaps = 16/155 (10%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
++ LPHLLFYGPPGTGKT+T LA R+L+ + VLELNASDDRGI +VR +I
Sbjct: 33 LETGNLPHLLFYGPPGTGKTSTALAVTRELFGPQLYKTRVLELNASDDRGINVVRTKIKD 92
Query: 361 FASTKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
FA+ S +K+IILDEAD+MT DAQNALRR +E ++ RFC ICNY+S++
Sbjct: 93 FAAVAVGRGVSDYPCPPFKVIILDEADSMTEDAQNALRRTMETYSKVTRFCFICNYISRL 152
Query: 415 PPAI----------QSRCTRFRFGPLDSSLIMSRL 439
I SRC +FRF L+ ++ R+
Sbjct: 153 CKTIILCFRIIEPLASRCAKFRFKSLNQDVMHGRI 187
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 73/135 (54%), Gaps = 20/135 (14%)
Query: 103 VEKYRPSTLDELVSHQD-IISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
VEKYRP + + V+HQD ++ T+ L+ ++ + L G + S +A
Sbjct: 8 VEKYRPKQVKD-VAHQDEVVRTLAN--------ALETGNLPHLLFYGPPGTGKTSTALAV 58
Query: 162 ----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------YKLIILDEA 211
F K VLELNASDDRGI +VR +I FA+ S +K+IILDEA
Sbjct: 59 TRELFGPQLYKTRVLELNASDDRGINVVRTKIKDFAAVAVGRGVSDYPCPPFKVIILDEA 118
Query: 212 DAMTNDAQNALRRKL 226
D+MT DAQNALRR +
Sbjct: 119 DSMTEDAQNALRRTM 133
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAI----------QSRCTRFRFGPLDSSLIMSRLDYVIE 50
+E ++ RFC ICNY+S++ I SRC +FRF L+ ++ R+ ++
Sbjct: 133 METYSKVTRFCFICNYISRLCKTIILCFRIIEPLASRCAKFRFKSLNQDVMHGRILHICS 192
Query: 51 QEKVNVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
+E V + + + +S+GD+R+ + LQSA + + I ++
Sbjct: 193 EEGVQMGSEALATLSRVSEGDLRRAITYLQSATRLYGSSITSKDILSV 240
>gi|296241869|ref|YP_003649356.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
gi|296094453|gb|ADG90404.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
Length = 325
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 103/156 (66%), Gaps = 2/156 (1%)
Query: 286 LLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNA 345
++N+S ++ ++ +F+ + +PH+LF GPPGTGKTT A LY + +LELNA
Sbjct: 20 VVNQS-EIVARLKKFVSDKNMPHMLFAGPPGTGKTTMAHCLAHDLYGD-NYRQYILELNA 77
Query: 346 SDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
SD+RGI ++R ++ +FA T+ + +K+I+LDEAD MT DAQ ALRR++E +T + RF
Sbjct: 78 SDERGIEVIRSKVKEFARTRVVGNVPFKIILLDEADNMTADAQQALRRLMELYTASTRFI 137
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+I NY SKI IQSR FRF PL ++ RL Y
Sbjct: 138 LIANYPSKIIEPIQSRTAVFRFTPLKREDVVERLKY 173
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 104/238 (43%), Gaps = 60/238 (25%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP TLDE+V+ +I++ ++ + D M + + GT + L
Sbjct: 10 EKYRPRTLDEVVNQSEIVARLK---KFVSDK--NMPHMLFAGPPGTGKTTMAHCLAHDLY 64
Query: 164 SARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALR 223
+ +LELNASD+RGI ++R ++ +FA T+ + +K+I+LDEAD MT DAQ ALR
Sbjct: 65 GDNYRQYILELNASDERGIEVIRSKVKEFARTRVVGNVPFKIILLDEADNMTADAQQALR 124
Query: 224 R-----------------------------------------------------KLPVTP 230
R K+
Sbjct: 125 RLMELYTASTRFILIANYPSKIIEPIQSRTAVFRFTPLKREDVVERLKYICSNEKVKCHE 184
Query: 231 DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
D I +LS+GDMR+ +NILQ A+A E + VY VG E+ +++ L+
Sbjct: 185 DALNTIFELSEGDMRRAINILQ--ASAALGEATVENVYKVVGLAHPREVREMIQLALS 240
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 35/185 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T + RF +I NY SKI IQSR FRF PL ++ RL Y+ EKV D
Sbjct: 127 MELYTASTRFILIANYPSKIIEPIQSRTAVFRFTPLKREDVVERLKYICSNEKVKCHEDA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNE------------- 92
I +LS+GDMR+ +NILQ++A AH EV E
Sbjct: 187 LNTIFELSEGDMRRAINILQASAALGEATVENVYKVVGLAHPREVREMIQLALSGNFAEA 246
Query: 93 -DTIFTLLVSRVEKYRPSTLDELVS-HQDIIST-IEIPESMLVDLVLKMSDIEYRLAAGT 149
+ + TL+++ Y S +D + H++I S+ I+IP+ + + + + +I++RL G
Sbjct: 247 RNKLRTLMIT----YGLSGVDVVKQIHKEIFSSDIKIPDEIKIVIADLVGEIQFRLVEGA 302
Query: 150 SEKIQ 154
++IQ
Sbjct: 303 DDEIQ 307
>gi|345006147|ref|YP_004809000.1| replication factor C small subunit [halophilic archaeon DL31]
gi|344321773|gb|AEN06627.1| Replication factor C small subunit [halophilic archaeon DL31]
Length = 327
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 96/144 (66%), Gaps = 2/144 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ +I ELPHLLF GP G GKT++ A AR++Y + LELNASD+RGI +VR
Sbjct: 37 RLQSYIAGGELPHLLFSGPAGIGKTSSATAIAREIYGD-DWRGNFLELNASDERGIDVVR 95
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA + Y++I LDEAD++T+DAQ+ALRR +E+F+ N RF + CNY SKI
Sbjct: 96 DRIKSFARS-AFGGHDYRIIFLDEADSLTSDAQSALRRTMEQFSDNTRFILSCNYSSKII 154
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC FRF PL I ++L
Sbjct: 155 DPIQSRCAVFRFSPLSDEAIANQL 178
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 36/187 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL I ++L + E E + VT +G
Sbjct: 134 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAIANQLGEIAEIEAIEVTDEG 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVS---- 116
A++ ++GDMR+ +N LQ+AAT D V+ + ++ + + RP ++E+V+
Sbjct: 194 FDALVYAANGDMRRGINSLQAAATT-GDVVDAEAVYAVTAT----ARPEDIEEMVAAAVD 248
Query: 117 --------------------HQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
DII + E+ + +V L+ ++ + +YR+A G
Sbjct: 249 GDFPKARATLDTLLTDVGMAGGDIIDQLHRSAWEFELSDRAVVRLMERLGEADYRIAEGA 308
Query: 150 SEKIQLS 156
+E++QL
Sbjct: 309 NEQVQLE 315
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 99/219 (45%), Gaps = 60/219 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP TL+++ ++ TIE +S + L + + AG + +A+
Sbjct: 17 IEKYRPQTLEDIHGQEE---TIERLQSYIAGGELPH--LLFSGPAGIGKTSSATAIAREI 71
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
+ LELNASD+RGI +VRD+I FA + Y++I LDEAD++T+DAQ+AL
Sbjct: 72 YGDDWRGNFLELNASDERGIDVVRDRIKSFARS-AFGGHDYRIIFLDEADSLTSDAQSAL 130
Query: 223 RRKL-----------------------------------------------------PVT 229
RR + VT
Sbjct: 131 RRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAIANQLGEIAEIEAIEVT 190
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
+G A++ ++GDMR+ +N LQ+AAT D V+ + VY
Sbjct: 191 DEGFDALVYAANGDMRRGINSLQAAATT-GDVVDAEAVY 228
>gi|299472904|emb|CBN80473.1| EsV-1-182 , RFC small subunit [Ectocarpus siliculosus]
Length = 326
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 93/142 (65%), Gaps = 4/142 (2%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA- 362
+LPHLLF+GPPGTGKT+TILA AR L + VLELNASD+RG+ +VRD+I F
Sbjct: 33 GDLPHLLFHGPPGTGKTSTILALARTLLGEENMRERVLELNASDERGLDVVRDKIKTFCK 92
Query: 363 ---STKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
S+ +KL+ILDEAD MT DAQ+ALRR +E RFC++CNY+SKI +
Sbjct: 93 MSISSFQPGCPPFKLVILDEADTMTADAQSALRRTMETQAVVTRFCLVCNYVSKIIAPLA 152
Query: 420 SRCTRFRFGPLDSSLIMSRLDY 441
SRC +FRF L + RL Y
Sbjct: 153 SRCAKFRFSTLTPESMKGRLLY 174
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 107/256 (41%), Gaps = 90/256 (35%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG------TSEKIQLS 156
VEKYRP + ++V H + ++ E K D+ + L G TS + L+
Sbjct: 5 VEKYRPRRVKDVVHHDHLKRVLKGAE--------KTGDLPHLLFHGPPGTGKTSTILALA 56
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFA----STKTMHKSSYKLIILDEAD 212
+ + R++ VLELNASD+RG+ +VRD+I F S+ +KL+ILDEAD
Sbjct: 57 RTLLGEENMRER--VLELNASDERGLDVVRDKIKTFCKMSISSFQPGCPPFKLVILDEAD 114
Query: 213 AMTNDAQNALRRKLP---------------------------------VTPDGKK----- 234
MT DAQ+ALRR + +TP+ K
Sbjct: 115 TMTADAQSALRRTMETQAVVTRFCLVCNYVSKIIAPLASRCAKFRFSTLTPESMKGRLLY 174
Query: 235 ------------------AIIDLSDGDMRKVLNILQSAATAH-----------ADEVNE- 264
AI+ S GDMR +N+LQ+ + A EV E
Sbjct: 175 ICERENIIFENCSRGVLDAIVKSSRGDMRSAVNLLQTVSQQQHRVTPESVVEVAGEVPER 234
Query: 265 --DTVYNSVGYPTKTE 278
DT++++V P+ E
Sbjct: 235 AFDTLWSAVTSPSHLE 250
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 26/154 (16%)
Query: 9 RFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKV---NVTPDGKKAII 65
RFC++CNY+SKI + SRC +FRF L + RL Y+ E+E + N + AI+
Sbjct: 136 RFCLVCNYVSKIIAPLASRCAKFRFSTLTPESMKGRLLYICERENIIFENCSRGVLDAIV 195
Query: 66 DLSDGDMRKVLNILQSAATAH-----------ADEVNE---DTIFTLLVSRVEKYRPSTL 111
S GDMR +N+LQ+ + A EV E DT+++ + S PS L
Sbjct: 196 KSSRGDMRSAVNLLQTVSQQQHRVTPESVVEVAGEVPERAFDTLWSAVTS------PSHL 249
Query: 112 DELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL 145
+ D +ST + E V VL S+I+ R+
Sbjct: 250 EHFEDVVDAVSTF-VGEGYPVGKVL--SEIQSRV 280
>gi|356515927|ref|XP_003526648.1| PREDICTED: replication factor C subunit 4-like isoform 3 [Glycine
max]
Length = 335
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 110/188 (58%), Gaps = 33/188 (17%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
++ PH+LFYGPPGTGKTTT LA A +L+ VLELNASDDRGI +VR +I
Sbjct: 37 LETGSCPHMLFYGPPGTGKTTTALAIAHQLFG-------VLELNASDDRGINVVRTKIKD 89
Query: 361 FASTK---TMHKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
FA+ K+ Y K+I+LDEAD+MT DAQNALRR +E ++ RF ICNY+S
Sbjct: 90 FAAVAVGTNQCKNGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVS 149
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLAL-TDIL 471
+I + SRC +FRF PL ++ SR+ Y I E+GL L + L
Sbjct: 150 RIIEPLASRCAKFRFKPLSEEIMSSRILY-----------------ISQEEGLCLDAEAL 192
Query: 472 TEISLLVH 479
+ +S + H
Sbjct: 193 STLSFISH 200
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 70/132 (53%), Gaps = 19/132 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP + + V+HQD + + + L+ + L G + + +A
Sbjct: 12 VEKYRPKQVKD-VAHQDEVVRV-------LTNTLETGSCPHMLFYGPPGTGKTTTALAI- 62
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTK---TMHKSSY-----KLIILDEADAM 214
A VLELNASDDRGI +VR +I FA+ K+ Y K+I+LDEAD+M
Sbjct: 63 --AHQLFGVLELNASDDRGINVVRTKIKDFAAVAVGTNQCKNGYPCPPFKIIVLDEADSM 120
Query: 215 TNDAQNALRRKL 226
T DAQNALRR +
Sbjct: 121 TEDAQNALRRTM 132
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 57/98 (58%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ SR+ Y+ ++E + + +
Sbjct: 132 METYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQEEGLCLDAEA 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
+ +S GD+R+ + LQSAA ++ + + ++
Sbjct: 192 LSTLSFISHGDLRRAITYLQSAARLFGSSISSENLISV 229
>gi|397772266|ref|YP_006539812.1| Replication factor C [Natrinema sp. J7-2]
gi|397681359|gb|AFO55736.1| Replication factor C [Natrinema sp. J7-2]
Length = 360
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 126/212 (59%), Gaps = 26/212 (12%)
Query: 240 SDGDMRKV-LNILQSAATAHAD-EVNEDTVYNSVGYPTKTEITNILRWL-------LNE- 289
+DGD+R L S + AD E E T P KTE+ W+ LN+
Sbjct: 14 ADGDLRSFYLAAPPSTGMSEADAEAAEST-------PGKTEV-----WIEKYRPERLNDI 61
Query: 290 --SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD 347
D+ ++ ++++++LPHLLF GP GTGKTT + AR++Y + LELNASD
Sbjct: 62 KGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAAKSIAREVYDD-DWQENFLELNASD 120
Query: 348 DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII 407
RGI +VRD+I FA + + S+++I LDEADA+T+DAQ+ALRR +E+F+ N RF +
Sbjct: 121 QRGIDVVRDRIKDFARS-SFGGYSHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILS 179
Query: 408 CNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
CNY S+I IQSRC FRF L + I +++
Sbjct: 180 CNYSSQIIDPIQSRCAVFRFTELTADAIEAQV 211
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 101/193 (52%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF L + I +++ + E + VT DG
Sbjct: 167 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTADAIEAQVREIAATEDIAVTDDG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ-- 118
A++ +DGDMRK +N LQ+AA + V+E+T+F + + RP ++ +V H
Sbjct: 227 VDALVYAADGDMRKAINALQAAAV-MGETVDEETVFAITAT----ARPEEVEAMVEHAID 281
Query: 119 ----------------------DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
D+I + ++PE V L+ ++ +++YR+ G
Sbjct: 282 GDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEGA 341
Query: 150 SEKIQLSALIAAF 162
+E++QL A++A+
Sbjct: 342 NERLQLEAMLASL 354
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 119/259 (45%), Gaps = 69/259 (26%)
Query: 68 SDGDMRKV-LNILQSAATAHAD-EVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIE 125
+DGD+R L S + AD E E T V +EKYRP L+++ H DI+ ++
Sbjct: 14 ADGDLRSFYLAAPPSTGMSEADAEAAESTPGKTEVW-IEKYRPERLNDIKGHTDIVPRLK 72
Query: 126 IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD---KLEVLELNASDDRGI 182
++ D+ + L AG + + +A + D + LELNASD RGI
Sbjct: 73 N--------YVEQDDLPHLLFAGPAGTGKTTAAKSIAREVYDDDWQENFLELNASDQRGI 124
Query: 183 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRKL---------------- 226
+VRD+I FA + + S+++I LDEADA+T+DAQ+ALRR +
Sbjct: 125 DVVRDRIKDFARS-SFGGYSHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYS 183
Query: 227 -----PV--------------------------------TPDGKKAIIDLSDGDMRKVLN 249
P+ T DG A++ +DGDMRK +N
Sbjct: 184 SQIIDPIQSRCAVFRFTELTADAIEAQVREIAATEDIAVTDDGVDALVYAADGDMRKAIN 243
Query: 250 ILQSAATAHADEVNEDTVY 268
LQ+AA + V+E+TV+
Sbjct: 244 ALQAAAV-MGETVDEETVF 261
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 41/64 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ E+GLA D++ ++ ++PE V L+ ++ +++YR+ G +E++QL A+
Sbjct: 291 LEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEGANERLQLEAM 350
Query: 516 IAAF 519
+A+
Sbjct: 351 LASL 354
>gi|321456941|gb|EFX68037.1| hypothetical protein DAPPUDRAFT_301682 [Daphnia pulex]
Length = 356
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 74/145 (51%), Positives = 103/145 (71%), Gaps = 10/145 (6%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LP+LLFYGPPGTGKT+TILA AR L+ + VLELNASD+RGI +VR+++ F S
Sbjct: 66 DLPNLLFYGPPGTGKTSTILAAARDLFGDI-YKDRVLELNASDERGIQVVREKVKIF-SQ 123
Query: 365 KTMHK--------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
+T+ +K++ILDEAD+MT AQ ALRR +EK T + RFC+ICNY+S+I
Sbjct: 124 RTVSSVRPDGKQCPPFKIVILDEADSMTGAAQAALRRTMEKETKSTRFCLICNYVSRIIE 183
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF PL +++ RL++
Sbjct: 184 PLTSRCSKFRFKPLPREILVKRLEH 208
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 93/183 (50%), Gaps = 28/183 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK T + RFC+ICNY+S+I + SRC++FRF PL +++ RL+++ E ++ + +
Sbjct: 162 MEKETKSTRFCLICNYVSRIIEPLTSRCSKFRFKPLPREILVKRLEHICIAENMSCSEEV 221
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD---------EVNEDTIFTLLVSRVEKYRPSTL 111
+++I+ S+GD+R+ + LQS A +++ E+ + +EK +
Sbjct: 222 LESLIEASEGDLRRAITFLQSIANLNSEACPTIEDIYEITGRVPSCWIEGLLEKCTSGSY 281
Query: 112 DELVS-------------------HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
D + S H+ I+ + E+ + K++ ++RLA G E+
Sbjct: 282 DAMQSFINNFSAEGFSVSQLLNQLHERIVFSTELSSKQKNVICEKLAICDHRLAEGADEQ 341
Query: 153 IQL 155
+QL
Sbjct: 342 LQL 344
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 26/142 (18%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
L+ VEKYRP T+DE+ +++++ ++ L+ +D+ L G + S +
Sbjct: 33 LIPWVEKYRPRTIDEVSYQEEVVAVLQKS--------LQGADLPNLLFYGPPGTGKTSTI 84
Query: 159 IAAFNSARD------KLEVLELNASDDRGIGIVRDQIFQFASTKTMHK--------SSYK 204
+AA ARD K VLELNASD+RGI +VR+++ F S +T+ +K
Sbjct: 85 LAA---ARDLFGDIYKDRVLELNASDERGIQVVREKVKIF-SQRTVSSVRPDGKQCPPFK 140
Query: 205 LIILDEADAMTNDAQNALRRKL 226
++ILDEAD+MT AQ ALRR +
Sbjct: 141 IVILDEADSMTGAAQAALRRTM 162
>gi|448450551|ref|ZP_21592370.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
gi|448522065|ref|ZP_21618330.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445702339|gb|ELZ54293.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445811665|gb|EMA61668.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
Length = 327
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 96/139 (69%), Gaps = 2/139 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +I ++++PHLLF GP G GKTT A AR++Y + + LELNASD RGI
Sbjct: 35 EIVERLQSYIAQDDVPHLLFSGPAGVGKTTAATAIAREIYGEDNWRGNFLELNASDQRGI 94
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA ++ ++++ LDE+D++T+DAQ+ALRR +E+F+ N RF + CNY
Sbjct: 95 DVVRDRIKGFA--RSSFGGDFRIVFLDESDSLTDDAQSALRRTMEQFSDNTRFILSCNYS 152
Query: 412 SKIPPAIQSRCTRFRFGPL 430
SKI IQSRC FRF PL
Sbjct: 153 SKIIDPIQSRCAVFRFSPL 171
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 101/189 (53%), Gaps = 28/189 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL + + + E++ VT G
Sbjct: 136 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEEIEVTDAG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLV-SRVEKYRP----------- 108
A++ +DGDMR+ +N LQ+AAT D V+E+ ++ + +R E+
Sbjct: 196 VDALVYAADGDMRRAINSLQAAATT-GDVVDEEAVYAITATARPEEIESMVTDALNGDFA 254
Query: 109 ---STLDELVSH-----QDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
STLD L++ D+I + E+ E V L+ ++ + +YR+A G +E++
Sbjct: 255 RARSTLDTLLTETGMAGGDVIDQLHRSVWEFELSEREAVRLMERIGEADYRIAEGANEQV 314
Query: 154 QLSALIAAF 162
QL +L+AA
Sbjct: 315 QLESLLAAL 323
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 117/266 (43%), Gaps = 79/266 (29%)
Query: 80 QSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMS 139
Q+AATA E+ +EKYRP TLD++ ++I+ ++ +
Sbjct: 7 QAAATATGREI-----------WIEKYRPQTLDDIHGQEEIVERLQS--------YIAQD 47
Query: 140 DIEYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST 195
D+ + L +G + + +A A + + LELNASD RGI +VRD+I FA
Sbjct: 48 DVPHLLFSGPAGVGKTTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFA-- 105
Query: 196 KTMHKSSYKLIILDEADAMTNDAQNALRR------------------------------- 224
++ ++++ LDE+D++T+DAQ+ALRR
Sbjct: 106 RSSFGGDFRIVFLDESDSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAV 165
Query: 225 ----------------------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEV 262
++ VT G A++ +DGDMR+ +N LQ+AAT D V
Sbjct: 166 FRFSPLSDEAVGGMVREIAAAEEIEVTDAGVDALVYAADGDMRRAINSLQAAATT-GDVV 224
Query: 263 NEDTVYNSVGYPTKTEITNILRWLLN 288
+E+ VY EI +++ LN
Sbjct: 225 DEEAVYAITATARPEEIESMVTDALN 250
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 462 EKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 519
E G+A D++ ++ V E+ E V L+ ++ + +YR+A G +E++QL +L+AA
Sbjct: 266 ETGMAGGDVIDQLHRSVWEFELSEREAVRLMERIGEADYRIAEGANEQVQLESLLAAL 323
>gi|297620154|ref|YP_003708259.1| Replication factor C [Methanococcus voltae A3]
gi|297379131|gb|ADI37286.1| Replication factor C [Methanococcus voltae A3]
Length = 314
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 99/146 (67%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++++ +PHLLF G PG GKTT L A+ LY + LELN+SD+RGI ++R
Sbjct: 26 RLKNYVEKQSMPHLLFSGSPGIGKTTAALCLAKDLYGD-DWRENFLELNSSDERGIDVIR 84
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
++ FA TK + + +K+I LDE+DA+T+DAQNALRR +EK++ RF + CNY SKI
Sbjct: 85 TKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKII 144
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
P IQSRC FRF PL + ++ ++Y
Sbjct: 145 PPIQSRCAIFRFSPLKTEDVLDYMNY 170
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 109/192 (56%), Gaps = 30/192 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RF + CNY SKI P IQSRC FRF PL + ++ ++Y+ E E + + G
Sbjct: 124 MEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDVLDYMNYISENENITIEKSG 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL---------------------L 99
AII +S+GDMRK +N+LQ+AA A ++ ++ED ++ + +
Sbjct: 184 SDAIIYVSEGDMRKSVNVLQTAA-AVSNVIDEDIVYKVSSRARPDEIKKMIDLAINARFM 242
Query: 100 VSRVEKYRPSTLDELVSHQDIISTI--EIP-----ESMLVDLVLKMSDIEYRLAAGTSEK 152
+R + Y+ +D + QDI++ + E+P E+ V L+ +++ ++R+ G +++
Sbjct: 243 EAREQLYK-LMIDWGMGGQDILTQVFREVPYLDIEENEKVSLIEAIAECDFRIVEGGNDR 301
Query: 153 IQLSALIAAFNS 164
IQLSAL+A +
Sbjct: 302 IQLSALLAKLGT 313
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 121/258 (46%), Gaps = 75/258 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP+TL E+V ++II ++ + V K S + + L +G+ + AA
Sbjct: 6 VEKYRPTTLSEIVGQKEIIERLK-------NYVEKQS-MPHLLFSGSP---GIGKTTAAL 54
Query: 163 NSARD------KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
A+D + LELN+SD+RGI ++R ++ FA TK + + +K+I LDE+DA+T+
Sbjct: 55 CLAKDLYGDDWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTS 114
Query: 217 DAQNALRRKLPVTPD--------------------------------------------- 231
DAQNALRR + D
Sbjct: 115 DAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDVLDYMNYISEN 174
Query: 232 --------GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
G AII +S+GDMRK +N+LQ+AA A ++ ++ED VY EI ++
Sbjct: 175 ENITIEKSGSDAIIYVSEGDMRKSVNVLQTAA-AVSNVIDEDIVYKVSSRARPDEIKKMI 233
Query: 284 RWLLN----ESMDLCYKI 297
+N E+ + YK+
Sbjct: 234 DLAINARFMEAREQLYKL 251
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 43/67 (64%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
++ ++ I+ G+ DILT++ V L+I E+ V L+ +++ ++R+ G +++IQLSA
Sbjct: 247 QLYKLMIDWGMGGQDILTQVFREVPYLDIEENEKVSLIEAIAECDFRIVEGGNDRIQLSA 306
Query: 515 LIAAFNS 521
L+A +
Sbjct: 307 LLAKLGT 313
>gi|410670416|ref|YP_006922787.1| replication factor C [Methanolobus psychrophilus R15]
gi|409169544|gb|AFV23419.1| replication factor C [Methanolobus psychrophilus R15]
Length = 301
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ +I LPHLLF GPPG GKT T ++ AR+L+ + + ELNASD+RGI +VR
Sbjct: 10 RLKSYIKTRNLPHLLFSGPPGVGKTATSVSIARELFGDS-WRENFTELNASDERGIDVVR 68
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+I FA T + + +K+I LDEADA+T+DAQ+ALRR +E++T N RF + CNY SKI
Sbjct: 69 TKIKNFAKTTPIGGADFKIIFLDEADALTSDAQSALRRTMERYTNNCRFILSCNYSSKII 128
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSRC +RF PL + R+ +
Sbjct: 129 EPIQSRCAVYRFRPLSDEAVAGRVRF 154
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 101/193 (52%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E++T N RF + CNY SKI IQSRC +RF PL + R+ +V + E +++ DG
Sbjct: 108 MERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDEAVAGRVRFVAQNEGLDIAEDG 167
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
AI ++ GDMRK +N LQ+AA AD ++ D I+ + + RP + EL+
Sbjct: 168 VDAIKYVAQGDMRKAINSLQAAALI-ADTIHRDAIYKITAT----ARPEQVRELIETALS 222
Query: 116 -------------------SHQDIIST-------IEIPESMLVDLVLKMSDIEYRLAAGT 149
S +D+I I IPE +V+L+ + +I++RL G
Sbjct: 223 GNFTAARKHLDVFLLEQGLSGEDVIGQVYRAIFEINIPEKKMVELIDVIGEIDFRLTEGA 282
Query: 150 SEKIQLSALIAAF 162
+E+IQL +L+A F
Sbjct: 283 NERIQLESLLAHF 295
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 68/149 (45%), Gaps = 54/149 (36%)
Query: 173 ELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRR-------- 224
ELNASD+RGI +VR +I FA T + + +K+I LDEADA+T+DAQ+ALRR
Sbjct: 55 ELNASDERGIDVVRTKIKNFAKTTPIGGADFKIIFLDEADALTSDAQSALRRTMERYTNN 114
Query: 225 ---------------------------------------------KLPVTPDGKKAIIDL 239
L + DG AI +
Sbjct: 115 CRFILSCNYSSKIIEPIQSRCAVYRFRPLSDEAVAGRVRFVAQNEGLDIAEDGVDAIKYV 174
Query: 240 SDGDMRKVLNILQSAATAHADEVNEDTVY 268
+ GDMRK +N LQ+AA AD ++ D +Y
Sbjct: 175 AQGDMRKAINSLQAAALI-ADTIHRDAIY 202
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 40/59 (67%)
Query: 461 IEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 519
+E+GL+ D++ ++ + + IPE +V+L+ + +I++RL G +E+IQL +L+A F
Sbjct: 237 LEQGLSGEDVIGQVYRAIFEINIPEKKMVELIDVIGEIDFRLTEGANERIQLESLLAHF 295
>gi|371945111|gb|AEX62932.1| putative replication factor C small subunit [Moumouvirus Monve]
Length = 346
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 127/208 (61%), Gaps = 20/208 (9%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
FI LPHLLF+GP G+GKT+TI CA KLY + N M+LELNAS++RGI VR +I
Sbjct: 46 FIKSKTLPHLLFFGPSGSGKTSTIKCCAAKLYG-SYLNCMILELNASNERGIETVRTKIK 104
Query: 360 QFASTKTM------HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
F S K ++ +KL+ILDE D+MT +AQ LR+ IEK ++ RFC+ICN + K
Sbjct: 105 NFVSNKNSIFLPPELRNIFKLVILDEIDSMTVEAQGMLRQTIEKNSSTTRFCLICNDIDK 164
Query: 414 IPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWYIKIQEIKIEKGLALTD 469
I A+QSRC FRF PL+++ + RL D +++ + +I + I I KG D
Sbjct: 165 INLALQSRCALFRFSPLNNNEMHKRLKDICDIENVKYSTGVIDAV----INISKG----D 216
Query: 470 ILTEISLLVH-RLEIPESMLVDLVLKMS 496
+ + I+ L H L + + + V+ V K+S
Sbjct: 217 MRSAINTLQHVNLTVNDLITVNDVYKIS 244
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 57/98 (58%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK ++ RFC+ICN + KI A+QSRC FRF PL+++ + RL + + E V +
Sbjct: 146 IEKNSSTTRFCLICNDIDKINLALQSRCALFRFSPLNNNEMHKRLKDICDIENVKYSTGV 205
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
A+I++S GDMR +N LQ D + + ++ +
Sbjct: 206 IDAVINISKGDMRSAINTLQHVNLTVNDLITVNDVYKI 243
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 15/131 (11%)
Query: 104 EKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP +D+++SH+ I +++ I L L+ + +G+ + + A
Sbjct: 23 EKYRPRDIDQIISHKQITRSLKNFIKSKTLPHLL-------FFGPSGSGKTSTIKCCAAK 75
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTM------HKSSYKLIILDEADAMT 215
+ +LELNAS++RGI VR +I F S K ++ +KL+ILDE D+MT
Sbjct: 76 LYGSYLNCMILELNASNERGIETVRTKIKNFVSNKNSIFLPPELRNIFKLVILDEIDSMT 135
Query: 216 NDAQNALRRKL 226
+AQ LR+ +
Sbjct: 136 VEAQGMLRQTI 146
>gi|448315838|ref|ZP_21505477.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
gi|445610597|gb|ELY64367.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
Length = 330
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 110/174 (63%), Gaps = 19/174 (10%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ R++++++LPHL+F GP GTGKTT A AR++Y + LELNASD RGI +VR
Sbjct: 40 RLKRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDD-DWRENFLELNASDQRGIDVVR 98
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA + + +++I LDEADA+T+DAQ+ALRR +E+F++N RF + CNY S+I
Sbjct: 99 DRIKDFARS-SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQII 157
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTD 469
IQSRC FRF L + + +I+EI E+G+ +TD
Sbjct: 158 DPIQSRCAVFRFTELTEDAVEA-----------------QIREIATEEGIEVTD 194
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 106/189 (56%), Gaps = 28/189 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F++N RF + CNY S+I IQSRC FRF L + +++ + +E + VT DG
Sbjct: 137 MEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAVEAQIREIATEEGIEVTDDG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-VSRVEKYRP----------- 108
A+I +DGDMRK +N LQ+AA + V+E+T+F + +R E+
Sbjct: 197 VDALIYAADGDMRKAINGLQAAAV-MGEVVDEETVFAITSTARPEEVEAMVDRAIDGDFT 255
Query: 109 ---STLDELVSHQ-----DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ L++L++ + D+I + +IPE V L+ ++ +++YR+ G +E++
Sbjct: 256 AARAALEDLLTERGLAGGDVIDQLHRSAWQFDIPEKATVRLLERLGEVDYRITEGANERL 315
Query: 154 QLSALIAAF 162
QL A++A+
Sbjct: 316 QLEAMLASL 324
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 107/234 (45%), Gaps = 68/234 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP LDE+ H++I+ ++ ++ D+ + + AG + + +A A
Sbjct: 20 IEKYRPERLDEIKGHENIVPRLK--------RYVEQDDLPHLMFAGPAGTGKTTAAQAIA 71
Query: 163 NSARD---KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D + LELNASD RGI +VRD+I FA + + +++I LDEADA+T+DAQ
Sbjct: 72 REVYDDDWRENFLELNASDQRGIDVVRDRIKDFARS-SFGGYDHRIIFLDEADALTSDAQ 130
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 131 SALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAVEAQIREIATEEGI 190
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY--NSVGYPTKTE 278
VT DG A+I +DGDMRK +N LQ+AA + V+E+TV+ S P + E
Sbjct: 191 EVTDDGVDALIYAADGDMRKAINGLQAAAV-MGEVVDEETVFAITSTARPEEVE 243
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 42/64 (65%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ E+GLA D++ ++ + +IPE V L+ ++ +++YR+ G +E++QL A+
Sbjct: 261 LEDLLTERGLAGGDVIDQLHRSAWQFDIPEKATVRLLERLGEVDYRITEGANERLQLEAM 320
Query: 516 IAAF 519
+A+
Sbjct: 321 LASL 324
>gi|167045379|gb|ABZ10035.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine microorganism HF4000_APKG10F13]
Length = 323
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++ E +PHLLF GPPGTGKTT LA AR+++ + + + ELNASD+RGI +VR
Sbjct: 26 RLASYVREKSMPHLLFAGPPGTGKTTCSLALAREMFGE-HWQHNLHELNASDERGIDVVR 84
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+I +FA T + +K+I LDEADA+T+ AQ ALRR +EK++ RF + CNY SKI
Sbjct: 85 GKIKEFARTAPIGGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKII 144
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSRC FRF PL + L +
Sbjct: 145 EPIQSRCAVFRFRPLQGEDVQRYLKF 170
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 26/188 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RF + CNY SKI IQSRC FRF PL + L ++ +EK+ V D
Sbjct: 124 MEKYSRTCRFVLSCNYSSKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDA 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRP------------ 108
+A+ L+ GD+R+ +N LQ AA A D +E + +R + R
Sbjct: 184 YEALAYLAQGDLRRAINSLQMAAAADKDITSEVVYQAVSAARPGEVREVLELALQGNFAG 243
Query: 109 --STLDELV-----SHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
LD L+ + +DI + +EIP+ V L+ K++++++RL+ G + +IQ
Sbjct: 244 ARERLDALIITYGLAGEDILRQMHRTVRELEIPDEAKVQLIEKLAEVDFRLSEGATARIQ 303
Query: 155 LSALIAAF 162
+ A IA F
Sbjct: 304 IEAAIAHF 311
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 102/241 (42%), Gaps = 63/241 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLK--MSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+TL E+V Q +++T L V + M + + GT + AL
Sbjct: 6 VEKYRPATLAEVVG-QSVVTT------RLASYVREKSMPHLLFAGPPGTGKTTCSLALAR 58
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ + ELNASD+RGI +VR +I +FA T + +K+I LDEADA+T+ AQ
Sbjct: 59 EMFGEHWQHNLHELNASDERGIDVVRGKIKEFARTAPIGGGGFKIIFLDEADALTSAAQA 118
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR KL
Sbjct: 119 ALRRTMEKYSRTCRFVLSCNYSSKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLK 178
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
V D +A+ L+ GD+R+ +N LQ AA A D + + VY +V E+ +L L
Sbjct: 179 VNDDAYEALAYLAQGDLRRAINSLQMAAAADKD-ITSEVVYQAVSAARPGEVREVLELAL 237
Query: 288 N 288
Sbjct: 238 Q 238
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 461 IEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 519
I GLA DIL ++ V LEIP+ V L+ K++++++RL+ G + +IQ+ A IA F
Sbjct: 253 ITYGLAGEDILRQMHRTVRELEIPDEAKVQLIEKLAEVDFRLSEGATARIQIEAAIAHF 311
>gi|451849989|gb|EMD63292.1| hypothetical protein COCSADRAFT_38154 [Cochliobolus sativus ND90Pr]
Length = 416
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 103/170 (60%), Gaps = 27/170 (15%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
++R + + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR
Sbjct: 57 LSRTMQSSNLPHMLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVRQ 116
Query: 357 QIFQFASTKTMHKSSY---------------------------KLIILDEADAMTNDAQN 389
++ FA + +Y K+I+LDEAD+MT DAQ+
Sbjct: 117 KVKDFARQQLSVAPTYNVMVEDKSGTGEGGMVRYRDKYPCPPFKIIVLDEADSMTQDAQS 176
Query: 390 ALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
ALRR +E ++ RFC++CNY+++I + SRC++FRF LD + R+
Sbjct: 177 ALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVKRV 226
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF LD + R+ + E V +
Sbjct: 182 METYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVKRVSDIAALENVRLDDGV 241
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++ ++DGD+RK + LQSAA
Sbjct: 242 AEELVRVADGDLRKAITFLQSAA 264
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 39/155 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL E+ + + I ++ ++ S++ + L G + S ++A
Sbjct: 36 VEKYRPKTLSEVTAQDNTI--------QVLSRTMQSSNLPHMLFYGPPGTGKTSTILALA 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSY--------------- 203
+ K VLELNASD+RGI IVR ++ FA + +Y
Sbjct: 88 KELYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMVEDKSGTGEGGM 147
Query: 204 ------------KLIILDEADAMTNDAQNALRRKL 226
K+I+LDEAD+MT DAQ+ALRR +
Sbjct: 148 VRYRDKYPCPPFKIIVLDEADSMTQDAQSALRRTM 182
>gi|45357990|ref|NP_987547.1| replication factor C small subunit [Methanococcus maripaludis S2]
gi|50400879|sp|Q6M044.1|RFCS_METMP RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|44920747|emb|CAF29983.1| Replication factor C, small subunit [Methanococcus maripaludis S2]
Length = 315
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 100/148 (67%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++++ +PHLLF G PG GKTT LA A+ LY + LELN+SD+RGI
Sbjct: 22 EIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDT-WRENFLELNSSDERGI 80
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ FA TK + + +K+I LDE+DA+T+DAQNALRR +EK++ RF + CNY
Sbjct: 81 DVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYP 140
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI P IQSRC FRF PL + ++ L
Sbjct: 141 SKIIPPIQSRCAIFRFSPLKTEDLVENL 168
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 103/187 (55%), Gaps = 28/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RF + CNY SKI P IQSRC FRF PL + ++ L + E+E +N+ G
Sbjct: 124 MEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLEKGG 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------------------LV 100
AII +S+GDMRK +N+LQ+AA A +DE+ E+ ++ + V
Sbjct: 184 IDAIIYVSEGDMRKAINVLQTAA-AVSDEITEEIVYKVASKARPDEIKKMTQLALNGKFV 242
Query: 101 SRVEKYRPSTLDELVSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
E+ +D +S +DI + ++I E V LV + + ++R+ G++E+I
Sbjct: 243 EAREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERI 302
Query: 154 QLSALIA 160
QLSAL+A
Sbjct: 303 QLSALLA 309
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 108/241 (44%), Gaps = 63/241 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLK--MSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL E+V H +II L + V K M + + + G + AL
Sbjct: 6 VEKYRPETLSEVVGHHEIIKR-------LTNYVEKKSMPHLLFSGSPGVGKTTAALALAK 58
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELN+SD+RGI ++R ++ FA TK + + +K+I LDE+DA+T+DAQN
Sbjct: 59 DLYGDTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQN 118
Query: 221 ALRRKLPVTPD------------------------------------------------- 231
ALRR + D
Sbjct: 119 ALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLN 178
Query: 232 ----GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
G AII +S+GDMRK +N+LQ+AA A +DE+ E+ VY EI + + L
Sbjct: 179 LEKGGIDAIIYVSEGDMRKAINVLQTAA-AVSDEITEEIVYKVASKARPDEIKKMTQLAL 237
Query: 288 N 288
N
Sbjct: 238 N 238
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 461 IEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
I+ G++ DIL ++ V L+I E V LV + + ++R+ G++E+IQLSAL+A
Sbjct: 253 IDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQLSALLA 309
>gi|159904872|ref|YP_001548534.1| replication factor C small subunit [Methanococcus maripaludis C6]
gi|226739142|sp|A9A6K6.1|RFCS_METM6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|159886365|gb|ABX01302.1| Replication factor C [Methanococcus maripaludis C6]
Length = 315
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 100/148 (67%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++++ +PHLLF G PG GKTT LA A+ LY + LELN+SD+RGI
Sbjct: 22 EIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDT-WRENFLELNSSDERGI 80
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ FA TK + + +K+I LDE+DA+T+DAQNALRR +EK++ RF + CNY
Sbjct: 81 DVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYP 140
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI P IQSRC FRF PL + ++ L
Sbjct: 141 SKIIPPIQSRCAIFRFSPLKTEDLVENL 168
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 28/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RF + CNY SKI P IQSRC FRF PL + ++ L + E+E + + G
Sbjct: 124 MEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKGG 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------------------LV 100
AII +S+GDMRK +N+LQ+AA A +D V E+ ++ + V
Sbjct: 184 IDAIIYVSEGDMRKAINVLQTAA-AVSDTVTEEIVYKVASKARPDEIKKMTQLALNGKFV 242
Query: 101 SRVEKYRPSTLDELVSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
E+ +D +S +DI + ++I E V LV + + ++R+ G++E+I
Sbjct: 243 EAREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERI 302
Query: 154 QLSALIA 160
QLSAL+A
Sbjct: 303 QLSALLA 309
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 109/241 (45%), Gaps = 63/241 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLK--MSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL E+V H +II L + V K M + + + G + AL
Sbjct: 6 VEKYRPETLPEVVGHHEIIKR-------LTNYVEKKSMPHLLFSGSPGVGKTTAALALAK 58
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELN+SD+RGI ++R ++ FA TK + + +K+I LDE+DA+T+DAQN
Sbjct: 59 DLYGDTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQN 118
Query: 221 ALRRKL---------------------PV-------------TPDGKKAIIDLS------ 240
ALRR + P+ T D + + D+S
Sbjct: 119 ALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLT 178
Query: 241 -------------DGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+GDMRK +N+LQ+AA A +D V E+ VY EI + + L
Sbjct: 179 LEKGGIDAIIYVSEGDMRKAINVLQTAA-AVSDTVTEEIVYKVASKARPDEIKKMTQLAL 237
Query: 288 N 288
N
Sbjct: 238 N 238
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 461 IEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
I+ G++ DIL ++ V L+I E V LV + + ++R+ G++E+IQLSAL+A
Sbjct: 253 IDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQLSALLA 309
>gi|257052996|ref|YP_003130829.1| replication factor C small subunit [Halorhabdus utahensis DSM
12940]
gi|256691759|gb|ACV12096.1| Replication factor C [Halorhabdus utahensis DSM 12940]
Length = 326
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/135 (51%), Positives = 93/135 (68%), Gaps = 2/135 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++ N+L H+LF GP G GKTT A AR+LY + + LELNASD+RGI +VR
Sbjct: 36 RLGSYVSRNDLSHMLFAGPAGVGKTTAATAIARELYGE-DWEENFLELNASDERGIDVVR 94
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D++ FA T + Y++I LDEADA+T DAQ+ALRR +E+F+ NVRF + CNY S+I
Sbjct: 95 DRVKSFART-SFGGYDYRIIFLDEADALTADAQSALRRTMEQFSNNVRFILSCNYSSQII 153
Query: 416 PAIQSRCTRFRFGPL 430
IQSRC FRF PL
Sbjct: 154 DPIQSRCAVFRFSPL 168
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 99/181 (54%), Gaps = 28/181 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ NVRF + CNY S+I IQSRC FRF PL + +++ + ++E ++VT DG
Sbjct: 133 MEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADEAVEAQIRQIAQEEVIDVTEDG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-VSRVEKYRP----------- 108
+A++ ++ GDMRK +N LQ AA+ D VNE+ +F + +R E R
Sbjct: 193 IEALVYVAGGDMRKAINGLQ-AASMSGDTVNEEAVFEITSTARPEDIREMVDLALDGDFT 251
Query: 109 ---STLDELVSHQDI------------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
S LD L++ + I + ++ ++ V ++ ++ + +YR+ G SE+I
Sbjct: 252 AARSRLDTLLTEEGIAGGDIIDQLHRTVWEFDLSDAAAVRVLDRVGEADYRITEGASERI 311
Query: 154 Q 154
Q
Sbjct: 312 Q 312
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 102/222 (45%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE--KIQLSALIA 160
+EKYRP TL+++ H+ I+ + + +D+ + L AG + K + IA
Sbjct: 16 IEKYRPQTLEDIAGHEAIVERL--------GSYVSRNDLSHMLFAGPAGVGKTTAATAIA 67
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D E LELNASD+RGI +VRD++ FA T + Y++I LDEADA+T DAQ
Sbjct: 68 RELYGEDWEENFLELNASDERGIDVVRDRVKSFART-SFGGYDYRIIFLDEADALTADAQ 126
Query: 220 NALRRKLP---------------------------------------------------- 227
+ALRR +
Sbjct: 127 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADEAVEAQIRQIAQEEVI 186
Query: 228 -VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
VT DG +A++ ++ GDMRK +N LQ AA+ D VNE+ V+
Sbjct: 187 DVTEDGIEALVYVAGGDMRKAINGLQ-AASMSGDTVNEEAVF 227
>gi|157872662|ref|XP_001684866.1| putative replication factor C, subunit 2 [Leishmania major strain
Friedlin]
gi|68127936|emb|CAJ06571.1| putative replication factor C, subunit 2 [Leishmania major strain
Friedlin]
Length = 354
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 96/150 (64%), Gaps = 14/150 (9%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST- 364
+PH LF+GPPGTGKTT+ILA A +L+ + V ELNASDDRGI +VR+++ FA
Sbjct: 59 MPHFLFHGPPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGISVVREKVKIFAQGA 118
Query: 365 -------------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
K +KLIILDEADA+ DAQ ALRR++E F+ RFCI+CNY+
Sbjct: 119 VSSSGSSVTQSDGKVYPVPPFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYV 178
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
S+I I SRC ++RF PL S + R++Y
Sbjct: 179 SRIIDPIASRCAKYRFKPLVKSALYHRIEY 208
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 28/193 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ RFCI+CNY+S+I I SRC ++RF PL S + R++YV + E + ++P
Sbjct: 162 MEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPAS 221
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
A+ +S GD+R + LQSA A D+++++ ++ S L L SH
Sbjct: 222 LHALDTVSGGDLRLAIMHLQSAQKAKGDDLSKEDFVSVSGSVPADVMQQYLSALFSHRLE 281
Query: 118 -----------------------QDIISTIEIP--ESMLVDLVLKMSDIEYRLAAGTSEK 152
Q + + E P + ++LK+ E RLA G +
Sbjct: 282 EVIQASRRLVAEGFAAAQVLLQMQHYLVSAECPLNSAQRGKIMLKLCQTERRLADGGDDY 341
Query: 153 IQLSALIAAFNSA 165
+QL + +A SA
Sbjct: 342 LQLLDIGSAVCSA 354
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL E+ + + + + + M + GT + + A+
Sbjct: 28 VEKYRPRTLAEVEAQDEAVGALR----ACLKEGANMPHFLFHGPPGTGKTTSILAVAHEL 83
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST--------------KTMHKSSYKLII 207
F + V ELNASDDRGI +VR+++ FA K +KLII
Sbjct: 84 FGPDYIRSRVRELNASDDRGISVVREKVKIFAQGAVSSSGSSVTQSDGKVYPVPPFKLII 143
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEADA+ DAQ ALRR +
Sbjct: 144 LDEADALLPDAQAALRRMM 162
>gi|363540633|ref|YP_004894429.1| mg378 gene product [Megavirus chiliensis]
gi|448825330|ref|YP_007418261.1| putative replication factor C small subunit [Megavirus lba]
gi|350611798|gb|AEQ33242.1| putative replication factor C small subunit [Megavirus chiliensis]
gi|444236515|gb|AGD92285.1| putative replication factor C small subunit [Megavirus lba]
Length = 344
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 126/211 (59%), Gaps = 26/211 (12%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
FI+ LPHLLF+GP G+GKT+TI CA KLY K + M+LELNAS++RGI VR +I
Sbjct: 44 FIETKSLPHLLFFGPSGSGKTSTIKCCASKLYDKYT-DCMILELNASNERGIETVRTKIK 102
Query: 360 QFASTKTM------HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
F S+K ++ +KL+ILDE D+MT +AQ LR+ IEK + RFC+ICN + K
Sbjct: 103 NFVSSKNTIFLPMELRNIFKLVILDEIDSMTVEAQGMLRQTIEKNSKTTRFCLICNDIDK 162
Query: 414 IPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKG-------LA 466
I A+QSRC+ FRF PL + + RL DI KI+ +K KG ++
Sbjct: 163 INLALQSRCSLFRFSPLGDNDMYKRL--KDIC---------KIENVKYTKGVIEAIINIS 211
Query: 467 LTDILTEISLLVH-RLEIPESMLVDLVLKMS 496
D+ + I+ L H L + + + V+ V K+S
Sbjct: 212 KGDMRSAINTLQHVNLTVNDMITVNDVYKIS 242
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK + RFC+ICN + KI A+QSRC+ FRF PL + + RL + + E V T
Sbjct: 144 IEKNSKTTRFCLICNDIDKINLALQSRCSLFRFSPLGDNDMYKRLKDICKIENVKYTKGV 203
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
+AII++S GDMR +N LQ D + + ++ +
Sbjct: 204 IEAIINISKGDMRSAINTLQHVNLTVNDMITVNDVYKI 241
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 110/272 (40%), Gaps = 76/272 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP ++ ++SH++I ++ + ++ + + L G S + S +
Sbjct: 20 IEKYRPKDMNHIISHEEI--------TLALKSFIETKSLPHLLFFGPSGSGKTSTIKCCA 71
Query: 163 NSARDKLE---VLELNASDDRGIGIVRDQIFQFASTKTM------HKSSYKLIILDEADA 213
+ DK +LELNAS++RGI VR +I F S+K ++ +KL+ILDE D+
Sbjct: 72 SKLYDKYTDCMILELNASNERGIETVRTKIKNFVSSKNTIFLPMELRNIFKLVILDEIDS 131
Query: 214 MTNDAQNALRRKLP------------------------------VTPDGK---------- 233
MT +AQ LR+ + +P G
Sbjct: 132 MTVEAQGMLRQTIEKNSKTTRFCLICNDIDKINLALQSRCSLFRFSPLGDNDMYKRLKDI 191
Query: 234 -------------KAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEIT 280
+AII++S GDMR +N LQ D + + VY G+ I
Sbjct: 192 CKIENVKYTKGVIEAIINISKGDMRSAINTLQHVNLTVNDMITVNDVYKISGHCMPERIL 251
Query: 281 NILRWLLNES------MDLCYKINRFIDENEL 306
I + +N S D KI + EN +
Sbjct: 252 EIFKISMNLSKKQNNLYDFVEKITNIVVENNI 283
>gi|371943672|gb|AEX61500.1| putative replication factor C small subunit [Megavirus courdo7]
gi|425701258|gb|AFX92420.1| putative replication factor C small subunit [Megavirus courdo11]
Length = 344
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 126/211 (59%), Gaps = 26/211 (12%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
FI+ LPHLLF+GP G+GKT+TI CA KLY K + M+LELNAS++RGI VR +I
Sbjct: 44 FIETKSLPHLLFFGPSGSGKTSTIKCCASKLYDKYT-DCMILELNASNERGIETVRTKIK 102
Query: 360 QFASTKTM------HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
F S+K ++ +KL+ILDE D+MT +AQ LR+ IEK + RFC+ICN + K
Sbjct: 103 NFVSSKNTIFLPMELRNIFKLVILDEIDSMTVEAQGMLRQTIEKNSKTTRFCLICNDIDK 162
Query: 414 IPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKG-------LA 466
I A+QSRC+ FRF PL + + RL DI KI+ +K KG ++
Sbjct: 163 INLALQSRCSLFRFSPLGDNDMYKRL--KDIC---------KIENVKYTKGVIEAIINIS 211
Query: 467 LTDILTEISLLVH-RLEIPESMLVDLVLKMS 496
D+ + I+ L H L + + + V+ V K+S
Sbjct: 212 KGDMRSAINTLQHVNLTVNDMITVNDVYKIS 242
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK + RFC+ICN + KI A+QSRC+ FRF PL + + RL + + E V T
Sbjct: 144 IEKNSKTTRFCLICNDIDKINLALQSRCSLFRFSPLGDNDMYKRLKDICKIENVKYTKGV 203
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
+AII++S GDMR +N LQ D + + ++ +
Sbjct: 204 IEAIINISKGDMRSAINTLQHVNLTVNDMITVNDVYKI 241
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 110/272 (40%), Gaps = 76/272 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP ++ ++SH++I ++ + ++ + + L G S + S +
Sbjct: 20 IEKYRPKDMNHIISHEEI--------TLALKSFIETKSLPHLLFFGPSGSGKTSTIKCCA 71
Query: 163 NSARDKLE---VLELNASDDRGIGIVRDQIFQFASTKTM------HKSSYKLIILDEADA 213
+ DK +LELNAS++RGI VR +I F S+K ++ +KL+ILDE D+
Sbjct: 72 SKLYDKYTDCMILELNASNERGIETVRTKIKNFVSSKNTIFLPMELRNIFKLVILDEIDS 131
Query: 214 MTNDAQNALRRKLP------------------------------VTPDGK---------- 233
MT +AQ LR+ + +P G
Sbjct: 132 MTVEAQGMLRQTIEKNSKTTRFCLICNDIDKINLALQSRCSLFRFSPLGDNDMYKRLKDI 191
Query: 234 -------------KAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEIT 280
+AII++S GDMR +N LQ D + + VY G+ I
Sbjct: 192 CKIENVKYTKGVIEAIINISKGDMRSAINTLQHVNLTVNDMITVNDVYKISGHCMPERIL 251
Query: 281 NILRWLLNES------MDLCYKINRFIDENEL 306
I + +N S D KI + EN +
Sbjct: 252 EIFKISMNLSKKQNNLYDFVEKITNIVVENNI 283
>gi|341896367|gb|EGT52302.1| hypothetical protein CAEBREN_14732 [Caenorhabditis brenneri]
Length = 353
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 97/140 (69%), Gaps = 5/140 (3%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LPHLLFYGPPGTGKT+T LA +L+ K+ F+ VL+LNASD+RGI +VR ++ F+ T
Sbjct: 66 DLPHLLFYGPPGTGKTSTALAFCHQLFPKSIFHDRVLDLNASDERGISVVRQKVQAFSKT 125
Query: 365 KTMHKS-----SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
K+IILDE DAMT +AQ+A+RR+IE ++ RF +ICNY+S++ P +
Sbjct: 126 SLGSGGKEDVLKLKIIILDEVDAMTREAQSAMRRVIEDYSKTTRFILICNYVSRLIPPVV 185
Query: 420 SRCTRFRFGPLDSSLIMSRL 439
SRC +FRF L + + + RL
Sbjct: 186 SRCAKFRFKSLPAEVQVQRL 205
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 17/135 (12%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
+++ EKYRP TLD+ ++HQD + T ++ L+ D+ + L G + S
Sbjct: 33 VLTWTEKYRPKTLDD-IAHQDEVVT-------MLKGALQGRDLPHLLFYGPPGTGKTSTA 84
Query: 159 IAAFNSARDKL----EVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----YKLIILD 209
+A + K VL+LNASD+RGI +VR ++ F+ T K+IILD
Sbjct: 85 LAFCHQLFPKSIFHDRVLDLNASDERGISVVRQKVQAFSKTSLGSGGKEDVLKLKIIILD 144
Query: 210 EADAMTNDAQNALRR 224
E DAMT +AQ+A+RR
Sbjct: 145 EVDAMTREAQSAMRR 159
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RF +ICNY+S++ P + SRC +FRF L + + + RL + + E +T +
Sbjct: 161 IEDYSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEVQVQRLRTICDAEGAPMTDEE 220
Query: 61 KKAIIDLSDGDMRKVLNILQS 81
K +++ ++GD+R+ + LQS
Sbjct: 221 LKQVMEYAEGDLRRAVCTLQS 241
>gi|307353132|ref|YP_003894183.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
gi|307156365|gb|ADN35745.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
Length = 324
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 96/149 (64%), Gaps = 1/149 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++ LPHLLF GP G GKTT+ +A AR+ + + + ELNASD+RGI
Sbjct: 25 EIVARLKSYVKTGSLPHLLFTGPAGIGKTTSAVALAREFFGE-NWQVNFRELNASDERGI 83
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI QFA T M + +K++ LDEADA+TNDAQ ALRR +E + RF + CNY
Sbjct: 84 DVVRNQIKQFARTAPMGGAEFKILFLDEADALTNDAQAALRRTMENYAYTCRFILSCNYS 143
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
SKI IQSRC +RF PLD + L+
Sbjct: 144 SKIIDPIQSRCALYRFRPLDREAVTEELN 172
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 118/265 (44%), Gaps = 70/265 (26%)
Query: 93 DTIFTLLVSRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTS 150
+TI+T EKYRP TLD++V ++I++ ++ + L L+ + AG
Sbjct: 5 NTIWT------EKYRPKTLDDVVGQKEIVARLKSYVKTGSLPHLL-------FTGPAGIG 51
Query: 151 EKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDE 210
+ AL F ++ ELNASD+RGI +VR+QI QFA T M + +K++ LDE
Sbjct: 52 KTTSAVALAREFFGENWQVNFRELNASDERGIDVVRNQIKQFARTAPMGGAEFKILFLDE 111
Query: 211 ADAMTNDAQNALRR---------------------------------------------- 224
ADA+TNDAQ ALRR
Sbjct: 112 ADALTNDAQAALRRTMENYAYTCRFILSCNYSSKIIDPIQSRCALYRFRPLDREAVTEEL 171
Query: 225 -------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKT 277
L +T D AII ++ GDMRK +N LQ A + E+ E+ +Y
Sbjct: 172 NRIAKTEGLSITEDAMSAIIYVAQGDMRKAINALQGGAII-SPEIKEEMIYEITSTARPD 230
Query: 278 EITNILRWLLNESMDLC-YKINRFI 301
EI +L +++ + + +K+N I
Sbjct: 231 EIRELLSIIMDGNFNAAEHKLNGLI 255
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 92/192 (47%), Gaps = 37/192 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF + CNY SKI IQSRC +RF PLD + L+ + + E +++T D
Sbjct: 127 MENYAYTCRFILSCNYSSKIIDPIQSRCALYRFRPLDREAVTEELNRIAKTEGLSITEDA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVS---- 116
AII ++ GDMRK +N LQ A + E+ E+ I+ + + RP + EL+S
Sbjct: 187 MSAIIYVAQGDMRKAINALQGGAII-SPEIKEEMIYEITST----ARPDEIRELLSIIMD 241
Query: 117 ----------------------------HQDIISTIEIPESMLVDLVLKMSDIEYRLAAG 148
++ +I EI M V+++ + D ++R++ G
Sbjct: 242 GNFNAAEHKLNGLITGRGIAPLELLNQFYRTLIDNQEIDRKMKVEMISHLGDADFRISEG 301
Query: 149 TSEKIQLSALIA 160
+ IQ+ AL+A
Sbjct: 302 ANPNIQMEALLA 313
>gi|238576141|ref|XP_002387929.1| hypothetical protein MPER_13118 [Moniliophthora perniciosa FA553]
gi|215448797|gb|EEB88859.1| hypothetical protein MPER_13118 [Moniliophthora perniciosa FA553]
Length = 360
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 101/160 (63%), Gaps = 22/160 (13%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + LPH+LFYGPPGTGKT+TILA AR+L+ F + VLELNASD+RGI IVR+
Sbjct: 35 LQKALTSTNLPHMLFYGPPGTGKTSTILALARQLFGPDNFRSRVLELNASDERGISIVRE 94
Query: 357 QIFQFASTKTMHKS-----------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
+I FA K+ YK+IILDEAD+MT DAQ ALRRI+E + RFC
Sbjct: 95 KIKNFARQTPRAKTVSSDGKEYPCPPYKIIILDEADSMTQDAQGALRRIMETYARITRFC 154
Query: 406 IICNYLSKIPPAIQSRCT------RFRFGPLDSSLIMSRL 439
++CNY+++ Q+ T +FRF PLD + +RL
Sbjct: 155 LVCNYVTR-----QNHSTSCFAMLQFRFTPLDQTSSFNRL 189
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 72/137 (52%), Gaps = 23/137 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VE +RP T+D++ + Q ++ ++ L +++ + L G + S ++A
Sbjct: 14 VETHRPKTIDDVSAQQHTVAVLQ--------KALTSTNLPHMLFYGPPGTGKTSTILALA 65
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS-----------SYKLII 207
F + VLELNASD+RGI IVR++I FA K+ YK+II
Sbjct: 66 RQLFGPDNFRSRVLELNASDERGISIVREKIKNFARQTPRAKTVSSDGKEYPCPPYKIII 125
Query: 208 LDEADAMTNDAQNALRR 224
LDEAD+MT DAQ ALRR
Sbjct: 126 LDEADSMTQDAQGALRR 142
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 100/229 (43%), Gaps = 34/229 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCT------RFRFGPLDSSLIMSRLDYVIEQEKV 54
+E + RFC++CNY+++ Q+ T +FRF PLD + +RL + E +
Sbjct: 144 METYARITRFCLVCNYVTR-----QNHSTSCFAMLQFRFTPLDQTSSFNRLSQIAAAEHI 198
Query: 55 NVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDEL 114
++ + ++I S GD+R+ + LQ TAH + D ++ +++ D +
Sbjct: 199 SIDDEVVNSLIVNSSGDLRRAITYLQ---TAHRLSASTDPPTPIIPRDIQEIAGVVPDAV 255
Query: 115 VSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKL-EVLE 173
++ + I++PESM VD + A F++ R+K+ E+
Sbjct: 256 INDFLRVLGIDVPESMEVDTTSQTKG-------------------ANFDAIRNKVREICR 296
Query: 174 LNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
S + + V D + + + HKS LI + A+ + A L
Sbjct: 297 EGYSATQVLSQVHDVVVLHPTLQAQHKSQCALIFAEADKALCDGADEEL 345
>gi|429962773|gb|ELA42317.1| hypothetical protein VICG_00717 [Vittaforma corneae ATCC 50505]
Length = 300
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 104/271 (38%), Positives = 146/271 (53%), Gaps = 67/271 (24%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LP++LFYGPPGTGKTT I A R+L A N +LELNASD RGI VR QI +FA
Sbjct: 34 DLPNMLFYGPPGTGKTTAIKALTREL---AHQN--ILELNASDHRGIDTVRTQIKEFAGI 88
Query: 365 KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTR 424
K + K+I+LDEAD+M+ DAQ A+RRIIE + N RFC ICNY KI I SRCT+
Sbjct: 89 KLL---GPKIIVLDEADSMSRDAQAAIRRIIET-SKNTRFCFICNYYKKIIEPIVSRCTK 144
Query: 425 FRFGPLDSS------LIMSRLDYDD------------------------------ISFFN 448
FRF P++ S + + +DD +S N
Sbjct: 145 FRFSPVNGSSRIKEVCLKEDIPFDDEGIEILNQFSDGDMRKVMNDIQGIKGSYGALSIEN 204
Query: 449 IIIWY-IKIQEI------------------KIEK-GLALTDILTEISLLVHRLEIPESML 488
++ ++ +K E+ KIEK + T+++T+IS L+ + + M
Sbjct: 205 VLEFFGMKSDEVFVDIFDSLTKDDFKRCKEKIEKHDVDSTNLVTKISKLLVNSSLNKKM- 263
Query: 489 VDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 519
+++ + ++E RL G SEKIQ +A+IAAF
Sbjct: 264 -EILKLLGEVEQRLTVGCSEKIQTNAIIAAF 293
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 88/178 (49%), Gaps = 23/178 (12%)
Query: 5 TTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAI 64
+ N RFC ICNY KI I SRCT+FRF P++ S SR+ V +E + +G + +
Sbjct: 119 SKNTRFCFICNYYKKIIEPIVSRCTKFRFSPVNGS---SRIKEVCLKEDIPFDDEGIEIL 175
Query: 65 IDLSDGDMRKVLNILQSAATAHAD----------EVNEDTIFTLLVSRVEKYRPSTLDEL 114
SDGDMRKV+N +Q ++ + D +F + + K E
Sbjct: 176 NQFSDGDMRKVMNDIQGIKGSYGALSIENVLEFFGMKSDEVFVDIFDSLTKDDFKRCKEK 235
Query: 115 VSHQDIISTIEIPE--SMLVDLVLK--------MSDIEYRLAAGTSEKIQLSALIAAF 162
+ D+ ST + + +LV+ L + ++E RL G SEKIQ +A+IAAF
Sbjct: 236 IEKHDVDSTNLVTKISKLLVNSSLNKKMEILKLLGEVEQRLTVGCSEKIQTNAIIAAF 293
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 84/205 (40%), Gaps = 62/205 (30%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP TLDE+ + ++I ++ D+ L G + +A I A
Sbjct: 7 EKYRPKTLDEIRGNDEVIECLK---------SFNTEDLPNMLFYGPPGTGKTTA-IKALT 56
Query: 164 SARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALR 223
+LELNASD RGI VR QI +FA K + K+I+LDEAD+M+ DAQ A+R
Sbjct: 57 RELAHQNILELNASDHRGIDTVRTQIKEFAGIKLL---GPKIIVLDEADSMSRDAQAAIR 113
Query: 224 R-------------------------------------------------KLPVTPDGKK 234
R +P +G +
Sbjct: 114 RIIETSKNTRFCFICNYYKKIIEPIVSRCTKFRFSPVNGSSRIKEVCLKEDIPFDDEGIE 173
Query: 235 AIIDLSDGDMRKVLNILQSAATAHA 259
+ SDGDMRKV+N +Q ++
Sbjct: 174 ILNQFSDGDMRKVMNDIQGIKGSYG 198
>gi|449523838|ref|XP_004168930.1| PREDICTED: replication factor C subunit 4-like [Cucumis sativus]
Length = 219
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 93/141 (65%), Gaps = 8/141 (5%)
Query: 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS--- 363
PH+LFYGPPGTGKTTT LA A +L+ + + VLELNASDDRGI +VR +I FA
Sbjct: 43 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAV 102
Query: 364 TKTMHKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418
+ + Y K+IILDEAD+MT DAQNALRR +E + RF ICNY+S+I +
Sbjct: 103 SSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPL 162
Query: 419 QSRCTRFRFGPLDSSLIMSRL 439
SRC +FRF PL ++ R+
Sbjct: 163 ASRCAKFRFKPLSEEVMSKRI 183
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 20/136 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + + V+HQD + + + L+ ++ + L G + + +A
Sbjct: 12 VEKYRPKQVKD-VAHQDEVVRV-------LTNTLETANCPHMLFYGPPGTGKTTTALAIA 63
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS---TKTMHKSSY-----KLIILDE 210
F K VLELNASDDRGI +VR +I FA + + Y K+IILDE
Sbjct: 64 HQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDE 123
Query: 211 ADAMTNDAQNALRRKL 226
AD+MT DAQNALRR +
Sbjct: 124 ADSMTEDAQNALRRTM 139
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF ICNY+S+I + SRC +FRF PL ++ R+ ++ +E +++ +
Sbjct: 139 METHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHIGNEEGLSLDGEA 198
Query: 61 KKAIIDLSDGDMRKVLNILQ 80
+ +S GD+R+ + LQ
Sbjct: 199 LSTLSSISQGDLRRAITYLQ 218
>gi|334182754|ref|NP_001185060.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192020|gb|AEE30141.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 332
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/143 (51%), Positives = 97/143 (67%), Gaps = 15/143 (10%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+ PH+LFYGPPGTGKTTT LA A +L+ VLELNASDDRGI +VR +I FA+
Sbjct: 41 DCPHMLFYGPPGTGKTTTALAIAHQLFG-------VLELNASDDRGINVVRTKIKDFAAV 93
Query: 365 K--TMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
+ H+ S +K+IILDEAD+MT DAQNALRR +E ++ RF ICNY+S+I
Sbjct: 94 AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 153
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
+ SRC +FRF PL ++ +R+
Sbjct: 154 PLASRCAKFRFKPLSEEVMSNRI 176
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 73/132 (55%), Gaps = 19/132 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP + ++ ++++ ++ L+ +D + L G + + +A
Sbjct: 12 VEKYRPKQVKDVAHQEEVVR--------VLTNTLQTADCPHMLFYGPPGTGKTTTALAI- 62
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTK--TMHKSS------YKLIILDEADAM 214
A VLELNASDDRGI +VR +I FA+ + H+ S +K+IILDEAD+M
Sbjct: 63 --AHQLFGVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSM 120
Query: 215 TNDAQNALRRKL 226
T DAQNALRR +
Sbjct: 121 TEDAQNALRRTM 132
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF ICNY+S+I + SRC +FRF PL ++ +R+ ++ +E +++ +
Sbjct: 132 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEA 191
Query: 61 KKAIIDLSDGDMRKVLNILQSA 82
+ +S GD+R+ + LQSA
Sbjct: 192 LSTLSSISQGDLRRAITYLQSA 213
>gi|442749365|gb|JAA66842.1| Putative replication factor c subunit rfc4 [Ixodes ricinus]
Length = 274
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 101/143 (70%), Gaps = 10/143 (6%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LP+LLFYGPPGTGKT+TILA +R+L+ + + +LELNASD+RGI +VR++I F S
Sbjct: 91 DLPNLLFYGPPGTGKTSTILALSRELFGD-MYKSRILELNASDERGIQVVREKIKNF-SQ 148
Query: 365 KTMHKS--------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
T H + +K++ILDEAD+MT AQ ALRR +EK RFC+ICNY+S+I
Sbjct: 149 LTAHATRPDGRPCPPFKIVILDEADSMTPSAQAALRRTMEKQPKTTRFCLICNYISRIIE 208
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
+ SRC++FRF PL +++ RL
Sbjct: 209 PLTSRCSKFRFKPLPKDILLERL 231
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 14/139 (10%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEK RP T+D+ V+HQD + ++ + DL ++ + GT + + AL
Sbjct: 59 VPWVEKSRPKTVDD-VAHQDEVVSVLKKSLLGADL----PNLLFYGPPGTGKTSTILALS 113
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS--------SYKLIILDEA 211
K +LELNASD+RGI +VR++I F S T H + +K++ILDEA
Sbjct: 114 RELFGDMYKSRILELNASDERGIQVVREKIKNF-SQLTAHATRPDGRPCPPFKIVILDEA 172
Query: 212 DAMTNDAQNALRRKLPVTP 230
D+MT AQ ALRR + P
Sbjct: 173 DSMTPSAQAALRRTMEKQP 191
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK RFC+ICNY+S+I + SRC++FRF PL +++ RL + E V +
Sbjct: 187 MEKQPKTTRFCLICNYISRIIEPLTSRCSKFRFKPLPKDILLERLQKICTSENVQCDDEV 246
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+++ +GDMR+ + ++QS +
Sbjct: 247 FDFLMEACEGDMRRAITLIQSVS 269
>gi|146093994|ref|XP_001467108.1| putative replication factor C, subunit 2 [Leishmania infantum
JPCM5]
gi|134071472|emb|CAM70161.1| putative replication factor C, subunit 2 [Leishmania infantum
JPCM5]
Length = 354
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 96/150 (64%), Gaps = 14/150 (9%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST- 364
+PH LF+GPPGTGKTT+ILA A +L+ + V ELNASDDRGI +VR+++ FA
Sbjct: 59 MPHFLFHGPPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGA 118
Query: 365 -------------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
K +KLIILDEADA+ DAQ ALRR++E F+ RFCI+CNY+
Sbjct: 119 VSSSGSSVTQSDGKVYPVPPFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYV 178
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
S+I I SRC ++RF PL S + R++Y
Sbjct: 179 SRIIDPIASRCAKYRFKPLVKSALYHRIEY 208
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 28/193 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ RFCI+CNY+S+I I SRC ++RF PL S + R++YV + E + ++P
Sbjct: 162 MEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPAS 221
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
A+ +S GD+R + LQSA A D+++++ ++ S L L SH
Sbjct: 222 LHALDTVSGGDLRLAIMHLQSAQKAKGDDLSKEDFVSVSGSVPADVMQRYLSALFSHRLE 281
Query: 118 -----------------------QDIISTIEIP--ESMLVDLVLKMSDIEYRLAAGTSEK 152
Q + + E P + ++LK+ E RLA G +
Sbjct: 282 EVIQASRRLVAEGFAAAQVLLQMQHYLVSAECPLNSAQRGKIMLKLCQTERRLADGGDDY 341
Query: 153 IQLSALIAAFNSA 165
+QL + +A SA
Sbjct: 342 LQLLDIGSAVCSA 354
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL E+ + + + + + M + GT + + A+
Sbjct: 28 VEKYRPRTLAEVEAQDEAVGALR----ACLKEGANMPHFLFHGPPGTGKTTSILAVAHEL 83
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST--------------KTMHKSSYKLII 207
F + V ELNASDDRGI +VR+++ FA K +KLII
Sbjct: 84 FGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSSGSSVTQSDGKVYPVPPFKLII 143
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEADA+ DAQ ALRR +
Sbjct: 144 LDEADALLPDAQAALRRMM 162
>gi|398019618|ref|XP_003862973.1| replication factor C, subunit 2, putative [Leishmania donovani]
gi|322501204|emb|CBZ36283.1| replication factor C, subunit 2, putative [Leishmania donovani]
Length = 354
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 96/150 (64%), Gaps = 14/150 (9%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST- 364
+PH LF+GPPGTGKTT+ILA A +L+ + V ELNASDDRGI +VR+++ FA
Sbjct: 59 MPHFLFHGPPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGA 118
Query: 365 -------------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
K +KLIILDEADA+ DAQ ALRR++E F+ RFCI+CNY+
Sbjct: 119 VSSSGSSVTQSDGKVYPVPPFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYV 178
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
S+I I SRC ++RF PL S + R++Y
Sbjct: 179 SRIIDPIASRCAKYRFKPLVKSALYHRIEY 208
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 28/193 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ RFCI+CNY+S+I I SRC ++RF PL S + R++YV + E + ++P
Sbjct: 162 MEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPAS 221
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
A+ +S GD+R + LQSA A D+++++ ++ S L L SH
Sbjct: 222 LHALDTVSGGDLRLAIMHLQSAQKAKGDDLSKEDFVSVSGSVPADVMQRYLSALFSHRLE 281
Query: 118 -----------------------QDIISTIEIP--ESMLVDLVLKMSDIEYRLAAGTSEK 152
Q + + E P + ++LK+ E RLA G +
Sbjct: 282 EVIQASRRLVAEGFAAAQVLLQMQHYLVSAECPLNSAQRGKIMLKLCQTERRLADGGDDY 341
Query: 153 IQLSALIAAFNSA 165
+QL + +A SA
Sbjct: 342 LQLLDIGSAVCSA 354
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL E+ + + + + + M + GT + + A+
Sbjct: 28 VEKYRPRTLAEVEAQDEAVGALR----ACLKEGANMPHFLFHGPPGTGKTTSILAVAHEL 83
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST--------------KTMHKSSYKLII 207
F + V ELNASDDRGI +VR+++ FA K +KLII
Sbjct: 84 FGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSSGSSVTQSDGKVYPVPPFKLII 143
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEADA+ DAQ ALRR +
Sbjct: 144 LDEADALLPDAQAALRRMM 162
>gi|399575998|ref|ZP_10769755.1| replication factor c small subunit [Halogranum salarium B-1]
gi|399238709|gb|EJN59636.1| replication factor c small subunit [Halogranum salarium B-1]
Length = 323
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 98/148 (66%), Gaps = 2/148 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ +I +++LPHLLF GP G GKTT A AR++Y + LELNASD+RGI
Sbjct: 31 DIVDRLESYIAQHDLPHLLFAGPAGIGKTTCATAIAREVYGD-DWRGNFLELNASDERGI 89
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + Y++I LDEAD++T+DAQ+ALRR +E+F+ N RF + CNY
Sbjct: 90 DVVRDRIKNFARA-SFGGHDYRIIFLDEADSLTSDAQSALRRTMEQFSDNTRFILSCNYS 148
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI IQSRC FRF PL + ++
Sbjct: 149 SKIIDPIQSRCAVFRFAPLSDDAVAGQI 176
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 101/189 (53%), Gaps = 28/189 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL + ++ + ++E + +T +G
Sbjct: 132 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFAPLSDDAVAGQIRKIADREGIEMTDEG 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF------------TLLVSRVEK--- 105
A++ +DGDMR+ +N LQ+AAT V+E+ ++ +++ + +E
Sbjct: 192 LDALVYAADGDMRRAINSLQAAATTGG-VVDEEAVYLITSTARPEEIESMVTAAIEGDFA 250
Query: 106 YRPSTLDEL-----VSHQDIISTIE-------IPESMLVDLVLKMSDIEYRLAAGTSEKI 153
S LD L ++ DII + + + V L+ ++ + +YR+ G +E++
Sbjct: 251 QARSKLDTLLTDTGMAGGDIIDQLHRGAWDFGLDQRETVRLMERIGEADYRITEGANEQV 310
Query: 154 QLSALIAAF 162
QL A++A+
Sbjct: 311 QLEAMLASL 319
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 105/234 (44%), Gaps = 68/234 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE--KIQLSALIA 160
+EKYRP TLD++ +DI+ +E + D+ + L AG + K + IA
Sbjct: 15 IEKYRPQTLDDVYGQEDIVDRLES--------YIAQHDLPHLLFAGPAGIGKTTCATAIA 66
Query: 161 AFNSARD-KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D + LELNASD+RGI +VRD+I FA + Y++I LDEAD++T+DAQ
Sbjct: 67 REVYGDDWRGNFLELNASDERGIDVVRDRIKNFARA-SFGGHDYRIIFLDEADSLTSDAQ 125
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 126 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFAPLSDDAVAGQIRKIADREGI 185
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY--NSVGYPTKTE 278
+T +G A++ +DGDMR+ +N LQ+AAT V+E+ VY S P + E
Sbjct: 186 EMTDEGLDALVYAADGDMRRAINSLQAAATTGG-VVDEEAVYLITSTARPEEIE 238
>gi|401425841|ref|XP_003877405.1| putative replication factor C, subunit 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493650|emb|CBZ28940.1| putative replication factor C, subunit 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 354
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 96/150 (64%), Gaps = 14/150 (9%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST- 364
+PH LF+GPPGTGKTT+ILA A +L+ + V ELNASDDRGI +VR+++ FA
Sbjct: 59 MPHFLFHGPPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGA 118
Query: 365 -------------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
K +KLIILDEADA+ DAQ ALRR++E F+ RFCI+CNY+
Sbjct: 119 VSSSGSSVTQSDGKVYPVPPFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYV 178
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
S+I I SRC ++RF PL S + R++Y
Sbjct: 179 SRIIDPIASRCAKYRFKPLVKSALYHRIEY 208
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 67/118 (56%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ RFCI+CNY+S+I I SRC ++RF PL S + R++YV + E + ++P
Sbjct: 162 MEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPAS 221
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ 118
A+ +S GD+R + LQSA A D+++++ ++ S L L SH+
Sbjct: 222 LHALDTVSGGDLRLAIMHLQSAQKAKGDDLSKEDFVSVSGSVPADVMQRYLSALFSHR 279
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 65/139 (46%), Gaps = 19/139 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL E+ + + + + + M + GT + + A+
Sbjct: 28 VEKYRPRTLAEVEAQDEAVGALR----ACLKEGANMPHFLFHGPPGTGKTTSILAVAHEL 83
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST--------------KTMHKSSYKLII 207
F + V ELNASDDRGI +VR+++ FA K +KLII
Sbjct: 84 FGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSSGSSVTQSDGKVYPVPPFKLII 143
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEADA+ DAQ ALRR +
Sbjct: 144 LDEADALLPDAQAALRRMM 162
>gi|378727800|gb|EHY54259.1| replication factor C subunit 2/4 [Exophiala dermatitidis
NIH/UT8656]
Length = 408
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 107/171 (62%), Gaps = 16/171 (9%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + LPHLL +GPPGTGKT+TILA R+L+ V E+NASD+RG+ ++R+
Sbjct: 57 LRRMVHAANLPHLLLFGPPGTGKTSTILALCRELFGPELMKTRVKEMNASDERGLTVIRE 116
Query: 357 QIFQFASTKTMHKS------------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRF 404
++ QFAS + +K++ILDEADA+T DAQ+ALRRIIE ++ RF
Sbjct: 117 KVKQFASQHLVSAPVSAEYREKYPCPPFKVVILDEADALTTDAQSALRRIIENYSKTTRF 176
Query: 405 CIICNYLSKIPPAIQSRCTRFRF----GPLDSSLIMSRLDYDDISFFNIII 451
C+I N++S+I I SRC++FRF GP S+ I L+ + + + + ++
Sbjct: 177 CLIANFVSRIIAPIASRCSKFRFKSLEGPQASARIQDILNAEHVEYEDGVV 227
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 24/147 (16%)
Query: 94 TIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
T+ LV VEKYRP +LD++ S + T+ ++ +++ + L G
Sbjct: 27 TLAPALVPWVEKYRPKSLDDVKSQEHATETLR--------RMVHAANLPHLLLFGPPGTG 78
Query: 154 QLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS-------- 201
+ S ++A F K V E+NASD+RG+ ++R+++ QFAS +
Sbjct: 79 KTSTILALCRELFGPELMKTRVKEMNASDERGLTVIREKVKQFASQHLVSAPVSAEYREK 138
Query: 202 ----SYKLIILDEADAMTNDAQNALRR 224
+K++ILDEADA+T DAQ+ALRR
Sbjct: 139 YPCPPFKVVILDEADALTTDAQSALRR 165
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RFC+I N++S+I I SRC++FRF L+ +R+ ++ E V
Sbjct: 167 IENYSKTTRFCLIANFVSRIIAPIASRCSKFRFKSLEGPQASARIQDILNAEHVEYEDGV 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ + +SDGD+R+ + +LQSAA
Sbjct: 227 VERSLQVSDGDLRRAITLLQSAA 249
>gi|340501071|gb|EGR27891.1| replication factor C, activator 1, putative [Ichthyophthirius
multifiliis]
Length = 357
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 97/149 (65%), Gaps = 24/149 (16%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST- 364
LPH++F+GPPGTGKT++ILA A++LY + +LELNASDDRGI +VR++I +FA
Sbjct: 44 LPHIIFHGPPGTGKTSSILAFAKQLYGPNFYRDRILELNASDDRGIQVVREKIKKFAQQV 103
Query: 365 -----------------------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
+ +YK+IILDEAD+MT +AQ+ALRRIIE ++
Sbjct: 104 VVKNPDKQFFFYQNQKSYQLFQIRNYKCPNYKIIILDEADSMTTEAQSALRRIIEDNSST 163
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
RFCIICNY++KI + SRC +FRF P+
Sbjct: 164 TRFCIICNYITKIIEPLASRCVKFRFKPI 192
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 123/283 (43%), Gaps = 94/283 (33%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG------TSEKIQLS 156
VEKYRP+ +DE+ ++++ ++E VL+ ++ + + G TS + +
Sbjct: 14 VEKYRPNKIDEVSYQEEVVKSLE--------GVLQTGNLPHIIFHGPPGTGKTSSILAFA 65
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFAST--------------------- 195
+ N RD+ +LELNASDDRGI +VR++I +FA
Sbjct: 66 KQLYGPNFYRDR--ILELNASDDRGIQVVREKIKKFAQQVVVKNPDKQFFFYQNQKSYQL 123
Query: 196 ---KTMHKSSYKLIILDEADAMTNDAQNALRRKL-------------------------- 226
+ +YK+IILDEAD+MT +AQ+ALRR +
Sbjct: 124 FQIRNYKCPNYKIIILDEADSMTTEAQSALRRIIEDNSSTTRFCIICNYITKIIEPLASR 183
Query: 227 -------PVTPDGK--------------------KAIIDLSDGDMRKVLNILQSAATAHA 259
P+ + + + +I +S+GD+RK +N++QSA+T
Sbjct: 184 CVKFRFKPIVEEAQLCKLKEICDKEYIQYEDQALEKLIHISNGDLRKSVNLIQSASTLFN 243
Query: 260 DEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYK-INRFI 301
+N TV G + N+ LL ++++ K + +FI
Sbjct: 244 KSINLQTVLEISGSIPDEHVINLYEVLLQKNLNELRKSVQQFI 286
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 59/98 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RFCIICNY++KI + SRC +FRF P+ + +L + ++E +
Sbjct: 157 IEDNSSTTRFCIICNYITKIIEPLASRCVKFRFKPIVEEAQLCKLKEICDKEYIQYEDQA 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
+ +I +S+GD+RK +N++QSA+T +N T+ +
Sbjct: 217 LEKLIHISNGDLRKSVNLIQSASTLFNKSINLQTVLEI 254
>gi|46108652|ref|XP_381384.1| hypothetical protein FG01208.1 [Gibberella zeae PH-1]
Length = 314
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 98/142 (69%), Gaps = 10/142 (7%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTM- 367
+LFYGPPGTGKT+T+LA A++LY + VLELNASD+RGI IVR+++ FA +
Sbjct: 1 MLFYGPPGTGKTSTVLALAKELYGPDMIKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 368 ----HKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418
+K Y K+IILDEAD+MT DAQ+ALRR +E ++ RFC+ICNY+++I +
Sbjct: 61 PPPGYKDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 120
Query: 419 QSRCTRFRFGPLDSSLIMSRLD 440
SRC++FRF LD S RL+
Sbjct: 121 ASRCSKFRFKSLDQSNAKKRLE 142
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 53/83 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD S RL+ + E+E V +
Sbjct: 97 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQSNAKKRLEEIAEKEGVPLEDGA 156
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+RK + LQSAA
Sbjct: 157 VDALIKCSEGDLRKAITYLQSAA 179
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 10/69 (14%)
Query: 168 KLEVLELNASDDRGIGIVRDQIFQFASTKTM-----HKSSY-----KLIILDEADAMTND 217
K VLELNASD+RGI IVR+++ FA + +K Y K+IILDEAD+MT D
Sbjct: 29 KSRVLELNASDERGISIVREKVKNFARMQLTNPPPGYKDKYPCPPFKIIILDEADSMTQD 88
Query: 218 AQNALRRKL 226
AQ+ALRR +
Sbjct: 89 AQSALRRTM 97
>gi|198429463|ref|XP_002129985.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 356
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/142 (50%), Positives = 99/142 (69%), Gaps = 7/142 (4%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA-- 362
+LP+LLFYGPPGTGKT+TILA +R+L+ VLELN+SD+RGI ++R+++ FA
Sbjct: 64 DLPNLLFYGPPGTGKTSTILALSRELFGFQLMKERVLELNSSDERGINVIREKVKNFAQL 123
Query: 363 STKTMHKSS-----YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
+ ++ + YK+IILDEAD+MT AQ ALRR +EK + RFC+ICNY+++I P
Sbjct: 124 TANSLREDGKKCPPYKIIILDEADSMTKAAQEALRRTMEKSSKTTRFCLICNYVTRIIPP 183
Query: 418 IQSRCTRFRFGPLDSSLIMSRL 439
I SRC++FRF L + RL
Sbjct: 184 IISRCSQFRFKSLSTEDQKKRL 205
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+++I P I SRC++FRF L + RL V E+E V ++ D
Sbjct: 161 MEKSSKTTRFCLICNYVTRIIPPIISRCSQFRFKSLSTEDQKKRLWMVCEKEGVKISQDA 220
Query: 61 KKAIIDLSDGDMRKVLNILQSA 82
++ S+GD+RK + LQ+A
Sbjct: 221 MSCLVKCSEGDLRKAMTYLQTA 242
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 23/137 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG------TSEKIQLS 156
VEKYRP +D+ V+HQD + + + L +D+ L G TS + LS
Sbjct: 35 VEKYRPKCVDD-VAHQDEVVAV-------LRKSLTGADLPNLLFYGPPGTGKTSTILALS 86
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFA--STKTMHKSS-----YKLIILD 209
+ F +++ VLELN+SD+RGI ++R+++ FA + ++ + YK+IILD
Sbjct: 87 RELFGFQLMKER--VLELNSSDERGINVIREKVKNFAQLTANSLREDGKKCPPYKIIILD 144
Query: 210 EADAMTNDAQNALRRKL 226
EAD+MT AQ ALRR +
Sbjct: 145 EADSMTKAAQEALRRTM 161
>gi|448611174|ref|ZP_21661808.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
gi|445743606|gb|ELZ95087.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
Length = 379
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 96/144 (66%), Gaps = 2/144 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +I+ ++LPHLLF GP G GKTT+ A AR +Y + LELNASD RGI
Sbjct: 86 EIVERLCSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGD-DWRGNFLELNASDQRGI 144
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + + Y++I LDEAD++TNDAQ+ALRR +E+F+ N RF + CNY
Sbjct: 145 DVVRDRIKNFARS-SFGGHDYRIIFLDEADSLTNDAQSALRRTMEQFSDNTRFILSCNYS 203
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLI 435
SKI IQSRC FRF PL I
Sbjct: 204 SKIIDPIQSRCAVFRFSPLGDDAI 227
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 36/185 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL I + + E E++ +T DG
Sbjct: 187 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAETEEIELTEDG 246
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
A++ + GDMR+ +N LQ+AAT + V+E+ ++ + RP ++++V
Sbjct: 247 LDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVYMI----TSTARPEDIEKMVRAAID 301
Query: 116 -------------------SHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
+ DII + ++ E V L+ ++ + +YR++ G
Sbjct: 302 GEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWEFDLDERAAVRLMERIGETDYRISEGA 361
Query: 150 SEKIQ 154
+E++Q
Sbjct: 362 NEQVQ 366
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 99/221 (44%), Gaps = 64/221 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTI--EIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP TLD++ ++I+ + I L L+ AG + +A+
Sbjct: 70 IEKYRPQTLDDIYGQEEIVERLCSYIERDDLPHLLFAGP-------AGVGKTTSATAIAR 122
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
A + LELNASD RGI +VRD+I FA + + Y++I LDEAD++TNDAQ+
Sbjct: 123 AIYGDDWRGNFLELNASDQRGIDVVRDRIKNFARS-SFGGHDYRIIFLDEADSLTNDAQS 181
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR ++
Sbjct: 182 ALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAETEEIE 241
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
+T DG A++ + GDMR+ +N LQ+AAT + V+E+ VY
Sbjct: 242 LTEDGLDALVYAAGGDMRRAINSLQAAATT-GEVVDEEAVY 281
>gi|150400153|ref|YP_001323920.1| replication factor C small subunit [Methanococcus vannielii SB]
gi|166225157|sp|A6US36.1|RFCS_METVS RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150012856|gb|ABR55308.1| Replication factor C [Methanococcus vannielii SB]
Length = 315
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 99/148 (66%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++++ +PHLLF G PG GKTT L A+ LY + LELN+SD+RGI
Sbjct: 22 EIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGNT-WKENFLELNSSDERGI 80
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ FA TK + + +K+I LDE+DA+T+DAQNALRR +EK++ RF + CNY
Sbjct: 81 DVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYP 140
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI P IQSRC FRF PL + ++ L
Sbjct: 141 SKIIPPIQSRCAIFRFSPLKTEDLVKNL 168
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 98/186 (52%), Gaps = 26/186 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RF + CNY SKI P IQSRC FRF PL + ++ L + E+E +NV G
Sbjct: 124 MEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKESINVEKSG 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT----------------AHADEVNEDTIFTL---LVS 101
AII +S+GDMRK +N+LQ+ A A DE+ + T L V
Sbjct: 184 MDAIIYVSEGDMRKAINVLQTGAAVSKNINETVIYKVASKARPDEIKKMTELALNGKFVE 243
Query: 102 RVEKYRPSTLDELVSHQDII-------STIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
E+ +D +S +DII +EI E V LV + + ++R+ G +E+IQ
Sbjct: 244 AREQLYKLMIDWGMSGEDIIIQIFREVPNLEISEKEKVHLVEAIGECDFRIVEGANERIQ 303
Query: 155 LSALIA 160
LSAL+A
Sbjct: 304 LSALLA 309
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 116/258 (44%), Gaps = 75/258 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP LDE+V HQ+II L + V K S + + L +G+ + AA
Sbjct: 6 VEKYRPENLDEVVGHQEIIKR-------LKNYVEKKS-MPHLLFSGSP---GVGKTTAAL 54
Query: 163 NSARD------KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
A+D K LELN+SD+RGI ++R ++ FA TK + + +K+I LDE+DA+T+
Sbjct: 55 CLAKDLYGNTWKENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTS 114
Query: 217 DAQNALRRKLPVTPD--------------------------------------------- 231
DAQNALRR + D
Sbjct: 115 DAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEK 174
Query: 232 --------GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
G AII +S+GDMRK +N+LQ+ A A + +NE +Y EI +
Sbjct: 175 ESINVEKSGMDAIIYVSEGDMRKAINVLQTGA-AVSKNINETVIYKVASKARPDEIKKMT 233
Query: 284 RWLLN----ESMDLCYKI 297
LN E+ + YK+
Sbjct: 234 ELALNGKFVEAREQLYKL 251
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
++ ++ I+ G++ DI+ +I V LEI E V LV + + ++R+ G +E+IQLSA
Sbjct: 247 QLYKLMIDWGMSGEDIIIQIFREVPNLEISEKEKVHLVEAIGECDFRIVEGANERIQLSA 306
Query: 515 LIA 517
L+A
Sbjct: 307 LLA 309
>gi|380471924|emb|CCF47039.1| replication factor C subunit 2 [Colletotrichum higginsianum]
Length = 315
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 98/142 (69%), Gaps = 10/142 (7%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH 368
+LFYGPPGTGKT+T+LA A++LY + VLELNASD+RGI IVR+++ FA + +
Sbjct: 1 MLFYGPPGTGKTSTVLALAKELYGPEMMKSRVLELNASDERGISIVREKVKDFARMQLTN 60
Query: 369 KSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418
++ +K+IILDEAD+MT DAQ+ALRR +E ++ RFC+ICNY+++I +
Sbjct: 61 PTNDYKKRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 120
Query: 419 QSRCTRFRFGPLDSSLIMSRLD 440
SRC++FRF LD RL+
Sbjct: 121 ASRCSKFRFKSLDQGNAKKRLE 142
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 51/83 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD RL+ + E E V +
Sbjct: 97 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLEDIAENEGVQLEDGA 156
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+RK + LQSAA
Sbjct: 157 LDALIKCSEGDLRKAITFLQSAA 179
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 10/69 (14%)
Query: 168 KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIILDEADAMTND 217
K VLELNASD+RGI IVR+++ FA + + ++ +K+IILDEAD+MT D
Sbjct: 29 KSRVLELNASDERGISIVREKVKDFARMQLTNPTNDYKKRYPCPPFKIIILDEADSMTQD 88
Query: 218 AQNALRRKL 226
AQ+ALRR +
Sbjct: 89 AQSALRRTM 97
>gi|302665246|ref|XP_003024235.1| replication factor C subunit [Trichophyton verrucosum HKI 0517]
gi|291188282|gb|EFE43624.1| replication factor C subunit [Trichophyton verrucosum HKI 0517]
Length = 336
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 99/146 (67%), Gaps = 18/146 (12%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH 368
+LFYG PGTGKT+TILA ++ L+ A + VLELNASD+RGI IVR++I FA MH
Sbjct: 1 MLFYGSPGTGKTSTILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFAR---MH 57
Query: 369 KSS---------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
S +K+IILDEAD+MT+DAQ+ALRR +EK++ RFC++CNY+++
Sbjct: 58 LSQPPADPAYRSQYPCPPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTR 117
Query: 414 IPPAIQSRCTRFRFGPLDSSLIMSRL 439
I + SRC++FRF LD S SRL
Sbjct: 118 IIDPVASRCSKFRFKVLDGSAAQSRL 143
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RFC++CNY+++I + SRC++FRF LD S SRL + EK+++ +
Sbjct: 99 MEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKVLDGSAAQSRLVEIARMEKLDLEDNV 158
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++ SDGD+RK + +QS+A
Sbjct: 159 VETLLRCSDGDLRKAITFMQSSA 181
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 49/80 (61%), Gaps = 18/80 (22%)
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------------YKLI 206
F A + VLELNASD+RGI IVR++I FA MH S +K+I
Sbjct: 23 FGPALVRSRVLELNASDERGINIVREKIKDFAR---MHLSQPPADPAYRSQYPCPPFKII 79
Query: 207 ILDEADAMTNDAQNALRRKL 226
ILDEAD+MT+DAQ+ALRR +
Sbjct: 80 ILDEADSMTHDAQSALRRTM 99
>gi|29841325|gb|AAP06357.1| similar to GenBank Accession Number BC003335 activator 1; 37 kDa
subunit; replication factor C subunit)(RFC37)in Mus
musculus [Schistosoma japonicum]
Length = 364
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 108/180 (60%), Gaps = 29/180 (16%)
Query: 276 KTEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ 335
+TE+ ++LR R I ++LP+LLFYGPPGTGKT+ ILA AR+L+
Sbjct: 42 QTEVVSVLR--------------RCIGGSDLPNLLFYGPPGTGKTSLILALARQLFGPL- 86
Query: 336 FNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSS--------------YKLIILDEAD 381
++ VLELNASD+RGI ++R+++ FA S YKLIILDEAD
Sbjct: 87 YSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPPYKLIILDEAD 146
Query: 382 AMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+MT AQ ALRR +E RFC+ CNY+++I I SRC +FRF PLD+ + +RL Y
Sbjct: 147 SMTAPAQAALRRTMETEMRTTRFCLTCNYVTRIIEPITSRCAKFRFRPLDNEIARARLRY 206
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 48/72 (66%)
Query: 9 RFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLS 68
RFC+ CNY+++I I SRC +FRF PLD+ + +RL Y+ + E ++VT + ++ L
Sbjct: 168 RFCLTCNYVTRIIEPITSRCAKFRFRPLDNEIARARLRYIADAENLSVTDETLDHLLSLC 227
Query: 69 DGDMRKVLNILQ 80
GD+R+ + +LQ
Sbjct: 228 RGDLRQGITMLQ 239
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 70/140 (50%), Gaps = 23/140 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP T+DE+ +++S + I S L +L+ + GT + + AL
Sbjct: 28 VEKYRPKTIDEVAYQTEVVSVLRRCIGGSDLPNLL-------FYGPPGTGKTSLILALAR 80
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS--------------YKLI 206
VLELNASD+RGI ++R+++ FA S YKLI
Sbjct: 81 QLFGPLYSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPPYKLI 140
Query: 207 ILDEADAMTNDAQNALRRKL 226
ILDEAD+MT AQ ALRR +
Sbjct: 141 ILDEADSMTAPAQAALRRTM 160
>gi|302502708|ref|XP_003013315.1| replication factor C subunit [Arthroderma benhamiae CBS 112371]
gi|291176878|gb|EFE32675.1| replication factor C subunit [Arthroderma benhamiae CBS 112371]
Length = 326
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 99/143 (69%), Gaps = 12/143 (8%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTM- 367
+LFYG PGTGKT+TILA ++ L+ A + VLELNASD+RGI IVR++I FA
Sbjct: 1 MLFYGSPGTGKTSTILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLFQ 60
Query: 368 ------HKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
++S Y K+IILDEAD+MT+DAQ+ALRR +EK++ RFC++CNY+++I
Sbjct: 61 PPADPAYRSQYPCPPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIID 120
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
+ SRC++FRF LD S SRL
Sbjct: 121 PVASRCSKFRFKVLDGSAAQSRL 143
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RFC++CNY+++I + SRC++FRF LD S SRL + EK+++ +
Sbjct: 99 MEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKVLDGSAAQSRLVEIARMEKLDLEDNV 158
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++ SDGD+RK + +QS+A
Sbjct: 159 VETLLRCSDGDLRKAITFMQSSA 181
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 12/77 (15%)
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTM-------HKSSY-----KLIILD 209
F A + VLELNASD+RGI IVR++I FA ++S Y K+IILD
Sbjct: 23 FGPALVRSRVLELNASDERGINIVREKIKDFARMHLFQPPADPAYRSQYPCPPFKIIILD 82
Query: 210 EADAMTNDAQNALRRKL 226
EAD+MT+DAQ+ALRR +
Sbjct: 83 EADSMTHDAQSALRRTM 99
>gi|226479998|emb|CAX73295.1| hypothetical protein [Schistosoma japonicum]
Length = 364
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 108/180 (60%), Gaps = 29/180 (16%)
Query: 276 KTEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ 335
+TE+ ++LR R I ++LP+LLFYGPPGTGKT+ ILA AR+L+
Sbjct: 42 QTEVVSVLR--------------RCIGGSDLPNLLFYGPPGTGKTSLILALARQLFGPL- 86
Query: 336 FNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSS--------------YKLIILDEAD 381
++ VLELNASD+RGI ++R+++ FA S YKLIILDEAD
Sbjct: 87 YSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPPYKLIILDEAD 146
Query: 382 AMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+MT AQ ALRR +E RFC+ CNY+++I I SRC +FRF PLD+ + +RL Y
Sbjct: 147 SMTAPAQAALRRTMETEMRTTRFCLTCNYVTRIIEPITSRCAKFRFRPLDNEIARARLRY 206
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 48/72 (66%)
Query: 9 RFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLS 68
RFC+ CNY+++I I SRC +FRF PLD+ + +RL Y+ + E ++VT + ++ L
Sbjct: 168 RFCLTCNYVTRIIEPITSRCAKFRFRPLDNEIARARLRYIADAENLSVTDETLDHLLSLC 227
Query: 69 DGDMRKVLNILQ 80
GD+R+ + +LQ
Sbjct: 228 RGDLRQGITMLQ 239
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 70/140 (50%), Gaps = 23/140 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP T+DE+ +++S + I S L +L+ + GT + + AL
Sbjct: 28 VEKYRPKTIDEVAYQTEVVSVLRRCIGGSDLPNLL-------FYGPPGTGKTSLILALAR 80
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS--------------YKLI 206
VLELNASD+RGI ++R+++ FA S YKLI
Sbjct: 81 QLFGPLYSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPPYKLI 140
Query: 207 ILDEADAMTNDAQNALRRKL 226
ILDEAD+MT AQ ALRR +
Sbjct: 141 ILDEADSMTAPAQAALRRTM 160
>gi|383620026|ref|ZP_09946432.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|448696276|ref|ZP_21697837.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|445783964|gb|EMA34788.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
Length = 330
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 111/174 (63%), Gaps = 19/174 (10%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ R++++++LPHL+F GP GTGKTT A AR++Y + LELNASD RGI +VR
Sbjct: 40 RLKRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREIYDD-DWRENFLELNASDQRGIDVVR 98
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA + + +++I LDEADA+T+DAQ+ALRR +E+F++N RF + CNY S+I
Sbjct: 99 DRIKDFARS-SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQII 157
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTD 469
IQSRC FRF L DD + +++EI E+G+ +TD
Sbjct: 158 DPIQSRCAVFRFTEL----------TDDAT-------EAQVREIAAEEGIEVTD 194
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 101/193 (52%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F++N RF + CNY S+I IQSRC FRF L +++ + +E + VT DG
Sbjct: 137 MEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDATEAQVREIAAEEGIEVTDDG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ-- 118
A++ +DGDMRK +N LQ+AA + V+E+T+F + + RP ++E+V H
Sbjct: 197 VDALVFAADGDMRKAINGLQAAAV-MGETVDEETVFAITST----ARPEEVEEMVEHAID 251
Query: 119 ----------------------DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
D+I + +IPE V L+ ++ +++YR+ G
Sbjct: 252 GDFTAARAALEDLLTDRGLAGGDVIDQLHRSAWQFDIPERATVRLLERLGEVDYRITTGA 311
Query: 150 SEKIQLSALIAAF 162
+E++QL ++A+
Sbjct: 312 NERLQLEGMLASL 324
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 107/234 (45%), Gaps = 68/234 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP LDE+ H++I+ ++ ++ D+ + + AG + + +A A
Sbjct: 20 IEKYRPERLDEIKGHENIVPRLK--------RYVEQDDLPHLMFAGPAGTGKTTAAQAIA 71
Query: 163 NSARD---KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D + LELNASD RGI +VRD+I FA + + +++I LDEADA+T+DAQ
Sbjct: 72 REIYDDDWRENFLELNASDQRGIDVVRDRIKDFARS-SFGGYDHRIIFLDEADALTSDAQ 130
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 131 SALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDATEAQVREIAAEEGI 190
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY--NSVGYPTKTE 278
VT DG A++ +DGDMRK +N LQ+AA + V+E+TV+ S P + E
Sbjct: 191 EVTDDGVDALVFAADGDMRKAINGLQAAAV-MGETVDEETVFAITSTARPEEVE 243
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 41/64 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ ++GLA D++ ++ + +IPE V L+ ++ +++YR+ G +E++QL +
Sbjct: 261 LEDLLTDRGLAGGDVIDQLHRSAWQFDIPERATVRLLERLGEVDYRITTGANERLQLEGM 320
Query: 516 IAAF 519
+A+
Sbjct: 321 LASL 324
>gi|219109832|ref|XP_002176669.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411204|gb|EEC51132.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 350
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 97/145 (66%), Gaps = 9/145 (6%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
LPHLL YGPPG+GKT+ LA R+L+ +Q+ VLELNASD+RGI +VR++I FAS
Sbjct: 49 LPHLLLYGPPGSGKTSVALALCRQLWHPSQWRRRVLELNASDERGISVVRNKIKHFASLT 108
Query: 366 TMHKSS---------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
++ +K+IILDEAD +T DAQ ALRRIIE + RF +ICNY++++
Sbjct: 109 VAKGNNDMENYPNPPFKIIILDEADTVTPDAQAALRRIIEAHSKITRFILICNYVTRVIE 168
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC +FRF L S + +RL++
Sbjct: 169 PLASRCAKFRFQSLPPSSMKARLEW 193
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 113/265 (42%), Gaps = 79/265 (29%)
Query: 103 VEKYRPSTLDELVSHQ-DIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
VE+YRP +L E VSHQ ++++T++ + L L+L Y + L+
Sbjct: 19 VERYRPKSLQE-VSHQTEVVATLQNAVTTGRLPHLLL------YGPPGSGKTSVALALCR 71
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------YKLIILDE 210
++ ++ + VLELNASD+RGI +VR++I FAS ++ +K+IILDE
Sbjct: 72 QLWHPSQWRRRVLELNASDERGISVVRNKIKHFASLTVAKGNNDMENYPNPPFKIIILDE 131
Query: 211 ADAMTNDAQNALRR-----------------------------------KLPVTPDGKKA 235
AD +T DAQ ALRR LP P KA
Sbjct: 132 ADTVTPDAQAALRRIIEAHSKITRFILICNYVTRVIEPLASRCAKFRFQSLP--PSSMKA 189
Query: 236 ---------------------IIDLSDGDMRKVLNILQSAAT--AHADEVNEDTVYNSVG 272
I++ +DGDMR+ + LQS + A +V++ + G
Sbjct: 190 RLEWIANEQNCSESEKDLLDDILEYADGDMRQAVTTLQSVHSLAAGGAKVDKAALAEIAG 249
Query: 273 YPTKTEITNILRWLLNESMDLCYKI 297
P + + LL+ S D K+
Sbjct: 250 LPPPAIVDMLWTALLSNSFDTMEKV 274
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 30/185 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVI-EQEKVNVTPD 59
IE + RF +ICNY++++ + SRC +FRF L S + +RL+++ EQ D
Sbjct: 147 IEAHSKITRFILICNYVTRVIEPLASRCAKFRFQSLPPSSMKARLEWIANEQNCSESEKD 206
Query: 60 GKKAIIDLSDGDMRKVLNILQS-----AATAHADEVN------------EDTIFTLLVSR 102
I++ +DGDMR+ + LQS A A D+ D ++T L+S
Sbjct: 207 LLDDILEYADGDMRQAVTTLQSVHSLAAGGAKVDKAALAEIAGLPPPAIVDMLWTALLSN 266
Query: 103 ----VEKYRPSTLDELVSHQDIISTI--------EIPESMLVDLVLKMSDIEYRLAAGTS 150
+EK + E S Q ++S + ++ E +L +++++ E + G
Sbjct: 267 SFDTMEKVVETLSAEGFSAQLLLSALVPKLVTDQDLNELSKAELAIRIAEAEKNMIEGGD 326
Query: 151 EKIQL 155
E++QL
Sbjct: 327 EQLQL 331
>gi|452205944|ref|YP_007486066.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
gi|452082044|emb|CCQ35295.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/145 (47%), Positives = 101/145 (69%), Gaps = 2/145 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++I++ +LPHLLF GP GTGKTT+ +A A+++Y + LELNASD RGI +VR
Sbjct: 35 RLKQYINQQDLPHLLFAGPAGTGKTTSSIAVAKEIYGD-DWRENFLELNASDQRGIDVVR 93
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA + +++I LDEADA+T++AQ+ALRR +E+F+ N RF + CNY S+I
Sbjct: 94 DRIKSFARA-SFGGYDHRVIFLDEADALTSEAQSALRRTMEQFSDNTRFILSCNYSSQII 152
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLD 440
IQSRC FRF PL + I +++
Sbjct: 153 DPIQSRCAVFRFSPLGEAAIEEQIE 177
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 36/185 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF PL + I +++ + E E + +T DG
Sbjct: 132 MEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGEAAIEEQIEAIAEAEGIEITDDG 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVS---- 116
A++ + GDMRK +N LQ+AA V+E+ ++T+ + RP ++ +VS
Sbjct: 192 MDALVYAAAGDMRKAINGLQAAAVVGG-VVDEEAVYTITST----ARPEEIETMVSAALD 246
Query: 117 --------------------HQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
DII + ++ E V L+ ++ + +YR+ AG
Sbjct: 247 GDFTAARAQLDTLLTDVGIAGGDIIDQMHRSVWEFDLGEREAVRLMERVGEADYRITAGA 306
Query: 150 SEKIQ 154
+E+IQ
Sbjct: 307 NEQIQ 311
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 102/234 (43%), Gaps = 68/234 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP LDE+V H+ I ++ + D+ + L AG + + ++ IA
Sbjct: 15 IEKYRPQALDEIVGHEGITERLK--------QYINQQDLPHLLFAGPAGTGKTTSSIAVA 66
Query: 163 NS--ARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D E LELNASD RGI +VRD+I FA + +++I LDEADA+T++AQ
Sbjct: 67 KEIYGDDWRENFLELNASDQRGIDVVRDRIKSFARA-SFGGYDHRVIFLDEADALTSEAQ 125
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 126 SALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGEAAIEEQIEAIAEAEGI 185
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY--NSVGYPTKTE 278
+T DG A++ + GDMRK +N LQ+AA V+E+ VY S P + E
Sbjct: 186 EITDDGMDALVYAAAGDMRKAINGLQAAAVVGG-VVDEEAVYTITSTARPEEIE 238
>gi|448424755|ref|ZP_21582611.1| replication factor C small subunit, partial [Halorubrum terrestre
JCM 10247]
gi|445681965|gb|ELZ34390.1| replication factor C small subunit, partial [Halorubrum terrestre
JCM 10247]
Length = 223
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 96/139 (69%), Gaps = 2/139 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +I ++++PHLLF GP G GKTT A AR++Y + + LELNASD RGI
Sbjct: 35 EIVERLQSYIAQDDVPHLLFSGPAGVGKTTAATAIAREIYGEDNWRGNFLELNASDQRGI 94
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA ++ ++++ LDE+D++T+DAQ+ALRR +E+F+ N RF + CNY
Sbjct: 95 DVVRDRIKGFA--RSSFGGDFRIVFLDESDSLTDDAQSALRRTMEQFSDNTRFILSCNYS 152
Query: 412 SKIPPAIQSRCTRFRFGPL 430
SKI IQSRC FRF PL
Sbjct: 153 SKIIDPIQSRCAVFRFSPL 171
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 52/84 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL + + + E++ VT G
Sbjct: 136 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEEIEVTDAG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT 84
A++ +DGDMR+ +N LQ+AAT
Sbjct: 196 VDALVYAADGDMRRAINSLQAAAT 219
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 78/234 (33%)
Query: 80 QSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMS 139
Q+AATA E+ +EKYRP TLD++ ++I+ ++ +
Sbjct: 7 QAAATATGREI-----------WIEKYRPQTLDDIHGQEEIVERLQ--------SYIAQD 47
Query: 140 DIEYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST 195
D+ + L +G + + +A A + + LELNASD RGI +VRD+I FA
Sbjct: 48 DVPHLLFSGPAGVGKTTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFA-- 105
Query: 196 KTMHKSSYKLIILDEADAMTNDAQNALRR------------------------------- 224
++ ++++ LDE+D++T+DAQ+ALRR
Sbjct: 106 RSSFGGDFRIVFLDESDSLTDDAQSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAV 165
Query: 225 ----------------------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAAT 256
++ VT G A++ +DGDMR+ +N LQ+AAT
Sbjct: 166 FRFSPLSDEAVGGMVREIAAAEEIEVTDAGVDALVYAADGDMRRAINSLQAAAT 219
>gi|371944797|gb|AEX62619.1| putative replication factor C small subunit [Moumouvirus Monve]
Length = 369
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 101/146 (69%), Gaps = 9/146 (6%)
Query: 303 ENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362
+ E+ H LFYGPPGTGKT+ ILA R+++ K F V+E NASDDRGI VR++I A
Sbjct: 38 KGEMTHFLFYGPPGTGKTSAILAMGREIF-KEHFPTRVIEFNASDDRGINAVREKITNEA 96
Query: 363 S---TKTMHKS-----SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
T ++ SYK+IILDEAD+MT++AQ+ALR IIE+++T RFC ICNY++KI
Sbjct: 97 KKYVTSIINPDGTTIPSYKIIILDEADSMTDEAQDALRVIIEQYSTTTRFCFICNYITKI 156
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLD 440
AI+SRC+ F LD ++++L+
Sbjct: 157 TDAIKSRCSAIYFKKLDDECMVNKLN 182
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 58/81 (71%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE+++T RFC ICNY++KIT AI+SRC+ F LD ++++L+ + +E + ++ D
Sbjct: 137 IEQYSTTTRFCFICNYITKITDAIKSRCSAIYFKKLDDECMVNKLNEISIKESMKLSKDI 196
Query: 61 KKAIIDLSDGDMRKVLNILQS 81
+ II++S+GDMRK + +LQ+
Sbjct: 197 LETIIEVSNGDMRKAIMLLQN 217
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 13/132 (9%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V +EKYRP L ++ +++I + S +M+ + GT + + A+
Sbjct: 8 VPWIEKYRPRRLQDIAQSENLIKLFKNSTSKG-----EMTHFLFYGPPGTGKTSAILAMG 62
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFAS---TKTMHKS-----SYKLIILDEA 211
V+E NASDDRGI VR++I A T ++ SYK+IILDEA
Sbjct: 63 REIFKEHFPTRVIEFNASDDRGINAVREKITNEAKKYVTSIINPDGTTIPSYKIIILDEA 122
Query: 212 DAMTNDAQNALR 223
D+MT++AQ+ALR
Sbjct: 123 DSMTDEAQDALR 134
>gi|433589372|ref|YP_007278868.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|448335506|ref|ZP_21524650.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
gi|433304152|gb|AGB29964.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|445616896|gb|ELY70508.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
Length = 330
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 110/176 (62%), Gaps = 17/176 (9%)
Query: 274 PTKTEITNILRWL----------LNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P KTE+ W+ + D+ ++ ++++++LPHLLF GP GTGKTT
Sbjct: 13 PGKTEV-----WIEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGTGKTTAA 67
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
A AR++Y + LELNASD RGI +VRD+I FA + + S+++I LDEADA+
Sbjct: 68 QAIAREVYDD-DWRENFLELNASDQRGIDVVRDRIKDFARS-SFGGYSHRIIFLDEADAL 125
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
T+DAQ+ALRR +E+F+ N RF + CNY S+I IQSRC FRF L + I +++
Sbjct: 126 TSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTENAIEAQV 181
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 103/193 (53%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF L + I +++ + E+++VT DG
Sbjct: 137 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTENAIEAQVREIAANEEIDVTDDG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ-- 118
A++ +DGDMRK +N LQ+AA + V+E+T+F + + RP ++ +V H
Sbjct: 197 VDALVFAADGDMRKAINGLQAAAV-MGETVDEETVFAITAT----ARPEEVEAMVEHAID 251
Query: 119 ----------------------DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
D+I + +IPE V L+ ++ +++YR+ G
Sbjct: 252 GDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEFDIPERATVRLLERLGEVDYRITEGA 311
Query: 150 SEKIQLSALIAAF 162
+E++QL A++A+
Sbjct: 312 NERLQLEAMLASL 324
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 103/222 (46%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP L ++ H DI+ +E ++ D+ + L AG + + +A A
Sbjct: 20 IEKYRPELLADIKGHTDIVPRLEN--------YVEQDDLPHLLFAGPAGTGKTTAAQAIA 71
Query: 163 NSARD---KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D + LELNASD RGI +VRD+I FA + + S+++I LDEADA+T+DAQ
Sbjct: 72 REVYDDDWRENFLELNASDQRGIDVVRDRIKDFARS-SFGGYSHRIIFLDEADALTSDAQ 130
Query: 220 NALRR-----------------------------------------------------KL 226
+ALRR ++
Sbjct: 131 SALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTENAIEAQVREIAANEEI 190
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
VT DG A++ +DGDMRK +N LQ+AA + V+E+TV+
Sbjct: 191 DVTDDGVDALVFAADGDMRKAINGLQAAAV-MGETVDEETVF 231
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 41/64 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ E+GLA D++ ++ +IPE V L+ ++ +++YR+ G +E++QL A+
Sbjct: 261 LEDLLTERGLAGGDVIDQLHRSAWEFDIPERATVRLLERLGEVDYRITEGANERLQLEAM 320
Query: 516 IAAF 519
+A+
Sbjct: 321 LASL 324
>gi|298675837|ref|YP_003727587.1| replication factor C [Methanohalobium evestigatum Z-7303]
gi|298288825|gb|ADI74791.1| Replication factor C [Methanohalobium evestigatum Z-7303]
Length = 318
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ +I N LPHLLF GPPG GKT +A A++L+ A ++ ELNASD+RGI +VR
Sbjct: 27 RLKSYISTNNLPHLLFSGPPGVGKTAAAVAIAKELFGDA-WHQNFTELNASDERGIDVVR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+I F+ T + + +K+I LDEADA+T DAQ+ALRR +E++T N RF + CNY SKI
Sbjct: 86 TKIKDFSKTSPIGGADFKIIFLDEADALTPDAQSALRRTMERYTNNCRFILSCNYSSKII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSRC +RF L + R+ Y
Sbjct: 146 EPIQSRCAVYRFRSLSYEAVEKRVRY 171
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 108/190 (56%), Gaps = 30/190 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E++T N RF + CNY SKI IQSRC +RF L + R+ Y+ EQE + ++ DG
Sbjct: 125 MERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRSLSYEAVEKRVRYIAEQEGLQISEDG 184
Query: 61 KKAIIDLSDGDMRKVLNILQSA----------------ATAHADEVNEDTIFTLLVSRVE 104
+AI +S GDMRK +N LQ++ ATAH +E+ E+ + L +
Sbjct: 185 VEAIKYVSQGDMRKAINALQASALIDDVIDKDTIYKITATAHPEEI-EELVQKALDGNFK 243
Query: 105 KYRPSTLDELVSHQ-----DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEK 152
R T+++L+S Q D++ I +IPE ++V+LV K+ +I++RL G +E+
Sbjct: 244 AAR-ETMEKLMSEQGLSGEDVVGQIYRAIFNLDIPEKLMVELVDKIGEIDFRLTEGANER 302
Query: 153 IQLSALIAAF 162
IQL AL+A F
Sbjct: 303 IQLEALLAHF 312
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 112/254 (44%), Gaps = 71/254 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
+EKYRP LD++V + I ++ + +++ + L +G + +A +A
Sbjct: 7 IEKYRPFKLDDIVGQGEAIKRLK--------SYISTNNLPHLLFSGPPGVGKTAAAVAIA 58
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 218
F A + ELNASD+RGI +VR +I F+ T + + +K+I LDEADA+T DA
Sbjct: 59 KELFGDAWHQ-NFTELNASDERGIDVVRTKIKDFSKTSPIGGADFKIIFLDEADALTPDA 117
Query: 219 QNALRRKLP--------------------------------------------------- 227
Q+ALRR +
Sbjct: 118 QSALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRSLSYEAVEKRVRYIAEQEG 177
Query: 228 --VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
++ DG +AI +S GDMRK +N LQ++A D +++DT+Y EI
Sbjct: 178 LQISEDGVEAIKYVSQGDMRKAINALQASALID-DVIDKDTIYKITATAHPEEIEE---- 232
Query: 286 LLNESMDLCYKINR 299
L+ +++D +K R
Sbjct: 233 LVQKALDGNFKAAR 246
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 42/58 (72%)
Query: 462 EKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 519
E+GL+ D++ +I + L+IPE ++V+LV K+ +I++RL G +E+IQL AL+A F
Sbjct: 255 EQGLSGEDVVGQIYRAIFNLDIPEKLMVELVDKIGEIDFRLTEGANERIQLEALLAHF 312
>gi|451927566|gb|AGF85444.1| replication factor C small subunit [Moumouvirus goulette]
Length = 346
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 98/146 (67%), Gaps = 7/146 (4%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
FI LPHLLF+GP G+GKT+TI CA KLY + N M+L+LNAS++RGI VR +I
Sbjct: 46 FIKSKTLPHLLFFGPSGSGKTSTIKCCAAKLYG-SYINCMILQLNASNERGIETVRTKIK 104
Query: 360 QFASTKTM------HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
F S K ++ +KL+ILDE D+MT +AQ LR+ IEK ++ RFC+ICN + K
Sbjct: 105 NFVSNKNSIFLPVELRNIFKLVILDEIDSMTVEAQGMLRQTIEKNSSTTRFCLICNDIDK 164
Query: 414 IPPAIQSRCTRFRFGPLDSSLIMSRL 439
I A+QSRC FRF PL+++ + RL
Sbjct: 165 INLALQSRCALFRFSPLNNNEMHKRL 190
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK ++ RFC+ICN + KI A+QSRC FRF PL+++ + RL + E V +
Sbjct: 146 IEKNSSTTRFCLICNDIDKINLALQSRCALFRFSPLNNNEMHKRLKDICNIENVKHSKGV 205
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
AII++S GDMR +N LQ D + + ++ +
Sbjct: 206 IDAIINISKGDMRSAINTLQHVNLTINDLITVNDVYKI 243
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 15/131 (11%)
Query: 104 EKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP +D+++SH++I +++ I L L+ + +G+ + + A
Sbjct: 23 EKYRPHDIDQIISHKEITRSLKNFIKSKTLPHLL-------FFGPSGSGKTSTIKCCAAK 75
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTM------HKSSYKLIILDEADAMT 215
+ +L+LNAS++RGI VR +I F S K ++ +KL+ILDE D+MT
Sbjct: 76 LYGSYINCMILQLNASNERGIETVRTKIKNFVSNKNSIFLPVELRNIFKLVILDEIDSMT 135
Query: 216 NDAQNALRRKL 226
+AQ LR+ +
Sbjct: 136 VEAQGMLRQTI 146
>gi|237839531|ref|XP_002369063.1| replication factor C small subunit, putative [Toxoplasma gondii
ME49]
gi|211966727|gb|EEB01923.1| replication factor C small subunit, putative [Toxoplasma gondii
ME49]
gi|221483291|gb|EEE21610.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Toxoplasma gondii GT1]
gi|221507780|gb|EEE33367.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Toxoplasma gondii VEG]
Length = 357
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 109/196 (55%), Gaps = 20/196 (10%)
Query: 255 ATAHADEVNEDTVYNSVGYPTKTEITNILRWL----LNESMDLCYKIN------RFIDEN 304
A A V + S P + ++ W+ D+ +++ R ++
Sbjct: 3 AAVSASSVEKAPSPFSTAAPPRVSSAQVVPWVEKYRPRRVEDMAHQVEPKKMLRRILETG 62
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+PHLLFYGPPGTGKT+ LA R+L+ + + +LELNASDDRGI +VR++I Q+ T
Sbjct: 63 NMPHLLFYGPPGTGKTSAALALVRELFGREEAKNRLLELNASDDRGIKVVRERIKQYTKT 122
Query: 365 KTMHKS----------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
++K++ILDEAD MT DAQ+ALRRI+E F+ RF IICNY+ +I
Sbjct: 123 NIAKGKINPETGREMPTWKIVILDEADMMTQDAQSALRRIMEAFSRTTRFIIICNYVHRI 182
Query: 415 PPAIQSRCTRFRFGPL 430
I SRC+ RF P+
Sbjct: 183 IDPIFSRCSPHRFEPV 198
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 130/293 (44%), Gaps = 90/293 (30%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
+V VEKYRP ++++ +HQ +E P+ ML +L+ ++ + L G + SA
Sbjct: 30 VVPWVEKYRPRRVEDM-AHQ-----VE-PKKML-RRILETGNMPHLLFYGPPGTGKTSAA 81
Query: 159 IAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS----------SYK 204
+A F K +LELNASDDRGI +VR++I Q+ T ++K
Sbjct: 82 LALVRELFGREEAKNRLLELNASDDRGIKVVRERIKQYTKTNIAKGKINPETGREMPTWK 141
Query: 205 LIILDEADAMTNDAQNALRRKL---------------------------------PVTPD 231
++ILDEAD MT DAQ+ALRR + PV D
Sbjct: 142 IVILDEADMMTQDAQSALRRIMEAFSRTTRFIIICNYVHRIIDPIFSRCSPHRFEPVARD 201
Query: 232 GKK--------------------AIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSV 271
++ A++ +S GD+R+ + +LQSAA+ + D ++ED +
Sbjct: 202 AQEARIRHICDSEGLVVTSGAVDALLRISQGDLRRAVTLLQSAASIYDDNLHEDAILEVA 261
Query: 272 GYPTKTEITNILRW--------------LLNESMDLCYKINRFIDENEL-PHL 309
G P +T+ LR ++++ D+C + I + + PHL
Sbjct: 262 GQPPARIVTDFLRACQASPSQASSEVDNVISQGWDVCLLLQEMIRQVVVSPHL 314
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 59/98 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ RF IICNY+ +I I SRC+ RF P+ +R+ ++ + E + VT
Sbjct: 163 MEAFSRTTRFIIICNYVHRIIDPIFSRCSPHRFEPVARDAQEARIRHICDSEGLVVTSGA 222
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
A++ +S GD+R+ + +LQSAA+ + D ++ED I +
Sbjct: 223 VDALLRISQGDLRRAVTLLQSAASIYDDNLHEDAILEV 260
>gi|432328759|ref|YP_007246903.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
gi|432135468|gb|AGB04737.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
Length = 320
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++ +PHLLF GP GTGKTT +A AR+L+ + + ELNASD+RGI
Sbjct: 22 EIVERLKSYVKAKSMPHLLFAGPAGTGKTTCAIALARELFGD-NWRSSFHELNASDERGI 80
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
GIVR +I ++A T + +K+I LDEADA+T DAQ ALRR +E ++ RF + CNY
Sbjct: 81 GIVRTKIKEYARTAAPNDVGFKIIFLDEADALTPDAQAALRRTMEMYSRTCRFILSCNYS 140
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI IQSRC FRF PL + I RL Y
Sbjct: 141 SKIIEPIQSRCAVFRFTPLKAEDIKKRLRY 170
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 99/192 (51%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CNY SKI IQSRC FRF PL + I RL Y+ E E +T D
Sbjct: 124 MEMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLKAEDIKKRLRYIAENEGKEITDDA 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------------------LV 100
AI+ +S GDMRK +NILQ +A A +D ++E T++ +
Sbjct: 184 LDAIVYISSGDMRKAINILQMSA-AISDTIDEGTVYKATGIAKREDVEEVVKKALGGDFI 242
Query: 101 SRVEKYRPSTLDELVSHQDIISTIE-------IPESMLVDLVLKMSDIEYRLAAGTSEKI 153
S K ++ +S +D+I I I + + V+L+ + +IE+R+ G +E+I
Sbjct: 243 SARNKLNKLLVELGLSGEDVIKQIHRVIYDLPIDDRLKVELLDRTGEIEFRMVEGANERI 302
Query: 154 QLSALIAAFNSA 165
QL AL+A F A
Sbjct: 303 QLDALLAYFTLA 314
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 106/239 (44%), Gaps = 59/239 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP LDE+V ++I+ ++ M + + AGT + AL
Sbjct: 6 VEKYRPKNLDEVVGQKEIVERLKSYVK-----AKSMPHLLFAGPAGTGKTTCAIALAREL 60
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
+ ELNASD+RGIGIVR +I ++A T + +K+I LDEADA+T DAQ AL
Sbjct: 61 FGDNWRSSFHELNASDERGIGIVRTKIKEYARTAAPNDVGFKIIFLDEADALTPDAQAAL 120
Query: 223 RRKL-----------------------------------------------------PVT 229
RR + +T
Sbjct: 121 RRTMEMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLKAEDIKKRLRYIAENEGKEIT 180
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
D AI+ +S GDMRK +NILQ +A A +D ++E TVY + G + ++ +++ L
Sbjct: 181 DDALDAIVYISSGDMRKAINILQMSA-AISDTIDEGTVYKATGIAKREDVEEVVKKALG 238
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 45/68 (66%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
K+ ++ +E GL+ D++ +I +++ L I + + V+L+ + +IE+R+ G +E+IQL A
Sbjct: 247 KLNKLLVELGLSGEDVIKQIHRVIYDLPIDDRLKVELLDRTGEIEFRMVEGANERIQLDA 306
Query: 515 LIAAFNSA 522
L+A F A
Sbjct: 307 LLAYFTLA 314
>gi|441432472|ref|YP_007354514.1| putative replication factor C small subunit [Acanthamoeba polyphaga
moumouvirus]
gi|440383552|gb|AGC02078.1| putative replication factor C small subunit [Acanthamoeba polyphaga
moumouvirus]
Length = 369
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 101/146 (69%), Gaps = 9/146 (6%)
Query: 303 ENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362
+ E+ H LFYGPPGTGKT+ ILA R+++ K F V+E NASDDRGI VR++I A
Sbjct: 38 KGEMTHFLFYGPPGTGKTSAILAMGREIF-KEHFPTRVIEFNASDDRGINAVREKITNEA 96
Query: 363 S---TKTMHKS-----SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
T ++ SYK+IILDEAD+MT++AQ+ALR IIE+++T RFC ICNY++KI
Sbjct: 97 KKYVTSIINPDGTIIPSYKIIILDEADSMTDEAQDALRVIIEQYSTTTRFCFICNYITKI 156
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLD 440
AI+SRC+ F LD ++++L+
Sbjct: 157 TDAIKSRCSAVYFKKLDDECMVNKLN 182
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 58/81 (71%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE+++T RFC ICNY++KIT AI+SRC+ F LD ++++L+ + +E + ++ D
Sbjct: 137 IEQYSTTTRFCFICNYITKITDAIKSRCSAVYFKKLDDECMVNKLNEISIKESMKLSKDI 196
Query: 61 KKAIIDLSDGDMRKVLNILQS 81
+ II++S+GDMRK + +LQ+
Sbjct: 197 LETIIEVSNGDMRKAIMLLQN 217
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 13/132 (9%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V +EKYRP L ++ +++I + S +M+ + GT + + A+
Sbjct: 8 VPWIEKYRPRRLQDIAQSENLIKLFKNSTSKG-----EMTHFLFYGPPGTGKTSAILAMG 62
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFAS---TKTMHKS-----SYKLIILDEA 211
V+E NASDDRGI VR++I A T ++ SYK+IILDEA
Sbjct: 63 REIFKEHFPTRVIEFNASDDRGINAVREKITNEAKKYVTSIINPDGTIIPSYKIIILDEA 122
Query: 212 DAMTNDAQNALR 223
D+MT++AQ+ALR
Sbjct: 123 DSMTDEAQDALR 134
>gi|448381294|ref|ZP_21561497.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
gi|445663102|gb|ELZ15856.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
Length = 330
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 118/206 (57%), Gaps = 34/206 (16%)
Query: 274 PTKTEITNILRWL----------LNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P KTE+ W+ + D+ ++ ++++++LPHLLF GP GTGKTT
Sbjct: 13 PGKTEV-----WIEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGTGKTTAA 67
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
A AR++Y + LELNASD RGI +VRD+I FA + + S+++I LDEADA+
Sbjct: 68 QAIAREVYDD-DWRENFLELNASDQRGIDVVRDRIKDFARS-SFGGYSHRIIFLDEADAL 125
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDD 443
T+DAQ+ALRR +E+F+ N RF + CNY S+I IQSRC FRF L I +
Sbjct: 126 TSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEA------ 179
Query: 444 ISFFNIIIWYIKIQEIKIEKGLALTD 469
+++EI +G+ +TD
Sbjct: 180 -----------QVREIAANEGIDVTD 194
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 101/193 (52%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF L I +++ + E ++VT DG
Sbjct: 137 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIAANEGIDVTDDG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ-- 118
A++ +DGDMRK +N LQ+AA + V+E+T+F + + RP ++ +V H
Sbjct: 197 VDALVFAADGDMRKAINGLQAAAV-MGETVDEETVFAITAT----ARPEEVEAMVEHAID 251
Query: 119 ----------------------DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
D+I + ++PE V L+ ++ +++YR+ G
Sbjct: 252 GDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEGA 311
Query: 150 SEKIQLSALIAAF 162
+E++QL A++A+
Sbjct: 312 NERLQLEAMLASL 324
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 103/222 (46%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP L ++ H DI+ +E ++ D+ + L AG + + +A A
Sbjct: 20 IEKYRPELLADIKGHTDIVPRLEN--------YVEQDDLPHLLFAGPAGTGKTTAAQAIA 71
Query: 163 NSARD---KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D + LELNASD RGI +VRD+I FA + + S+++I LDEADA+T+DAQ
Sbjct: 72 REVYDDDWRENFLELNASDQRGIDVVRDRIKDFARS-SFGGYSHRIIFLDEADALTSDAQ 130
Query: 220 NALRRKL---------------------PV------------------------------ 228
+ALRR + P+
Sbjct: 131 SALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIAANEGI 190
Query: 229 --TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
T DG A++ +DGDMRK +N LQ+AA + V+E+TV+
Sbjct: 191 DVTDDGVDALVFAADGDMRKAINGLQAAAV-MGETVDEETVF 231
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 41/64 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ E+GLA D++ ++ ++PE V L+ ++ +++YR+ G +E++QL A+
Sbjct: 261 LEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEGANERLQLEAM 320
Query: 516 IAAF 519
+A+
Sbjct: 321 LASL 324
>gi|358332382|dbj|GAA51055.1| replication factor C subunit 3/5 [Clonorchis sinensis]
Length = 403
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/97 (67%), Positives = 78/97 (80%)
Query: 343 LNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNV 402
LNASD RGI +VR+Q+ FASTK++ +KL+ILDEAD+MT DAQNALRRI+EKFT N
Sbjct: 152 LNASDARGINVVREQVLSFASTKSLFAGKFKLVILDEADSMTKDAQNALRRIVEKFTENT 211
Query: 403 RFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RFC+ICNYLSKI PAIQSRCT+FRF P+ + RL
Sbjct: 212 RFCLICNYLSKIIPAIQSRCTKFRFAPVSFQQMQPRL 248
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 118/197 (59%), Gaps = 28/197 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EKFT N RFC+ICNYLSKI PAIQSRCT+FRF P+ + RL + EKV +T DG
Sbjct: 204 VEKFTENTRFCLICNYLSKIIPAIQSRCTKFRFAPVSFQQMQPRLKEIATTEKVVLTDDG 263
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLV----SRVEKYRPSTLDELVS 116
KAI + GDMRK +N++QSAA + A +++E +++ + + + S L+E +
Sbjct: 264 MKAIYRFTSGDMRKAINLMQSAAMS-APKIDESSVYACVAYPSPAEIRSLTDSMLNEPIH 322
Query: 117 H----------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
QDI++ I P+S+ DL++ ++++E+R++ G SE++
Sbjct: 323 SAFKNMLATKNLKGIALQDILTELHPLVMKINFPDSVRCDLIIALAELEHRMSVGASERL 382
Query: 154 QLSALIAAFNSARDKLE 170
QL+AL+A+F A+ LE
Sbjct: 383 QLAALVASFARAKSSLE 399
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 89/176 (50%), Gaps = 54/176 (30%)
Query: 174 LNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRR--------- 224
LNASD RGI +VR+Q+ FASTK++ +KL+ILDEAD+MT DAQNALRR
Sbjct: 152 LNASDARGINVVREQVLSFASTKSLFAGKFKLVILDEADSMTKDAQNALRRIVEKFTENT 211
Query: 225 --------------------------------------------KLPVTPDGKKAIIDLS 240
K+ +T DG KAI +
Sbjct: 212 RFCLICNYLSKIIPAIQSRCTKFRFAPVSFQQMQPRLKEIATTEKVVLTDDGMKAIYRFT 271
Query: 241 DGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYK 296
GDMRK +N++QSAA + A +++E +VY V YP+ EI ++ +LNE + +K
Sbjct: 272 SGDMRKAINLMQSAAMS-APKIDESSVYACVAYPSPAEIRSLTDSMLNEPIHSAFK 326
>gi|448337480|ref|ZP_21526557.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
gi|445625386|gb|ELY78746.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
Length = 330
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 110/176 (62%), Gaps = 17/176 (9%)
Query: 274 PTKTEITNILRWL----------LNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P KTE+ W+ + D+ ++ ++++++LPHLLF GP GTGKTT
Sbjct: 13 PGKTEV-----WIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAA 67
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
+ AR++Y + LELNASD RGI +VRD+I FA + + S+++I LDEADA+
Sbjct: 68 KSIAREVYDD-DWQENFLELNASDQRGIDVVRDRIKDFARS-SFGGYSHRIIFLDEADAL 125
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
T+DAQ+ALRR +E+F+ N RF + CNY S+I IQSRC FRF L + I +++
Sbjct: 126 TSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELSADAIEAQV 181
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 101/193 (52%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF L + I +++ + E + VT DG
Sbjct: 137 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELSADAIEAQVREIAATEDIAVTDDG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ-- 118
A++ +DGDMRK +N LQ+AA + V+E+T+F + + RP ++ +V H
Sbjct: 197 VDALVYAADGDMRKAINALQAAAV-MGETVDEETVFAITAT----ARPEEVEAMVDHAID 251
Query: 119 ----------------------DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
D+I + ++PE V L+ ++ +++YR+ G
Sbjct: 252 GDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEGA 311
Query: 150 SEKIQLSALIAAF 162
+E++QL A++A+
Sbjct: 312 NERLQLEAMLASL 324
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 103/222 (46%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP LD++ H DI+ ++ ++ D+ + L AG + + +A +
Sbjct: 20 IEKYRPERLDDIKGHTDIVPRLKN--------YVEQDDLPHLLFAGPAGTGKTTAAKSIA 71
Query: 163 NSARD---KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D + LELNASD RGI +VRD+I FA + + S+++I LDEADA+T+DAQ
Sbjct: 72 REVYDDDWQENFLELNASDQRGIDVVRDRIKDFARS-SFGGYSHRIIFLDEADALTSDAQ 130
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 131 SALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELSADAIEAQVREIAATEDI 190
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
VT DG A++ +DGDMRK +N LQ+AA + V+E+TV+
Sbjct: 191 AVTDDGVDALVYAADGDMRKAINALQAAAV-MGETVDEETVF 231
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 41/64 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ E+GLA D++ ++ ++PE V L+ ++ +++YR+ G +E++QL A+
Sbjct: 261 LEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEGANERLQLEAM 320
Query: 516 IAAF 519
+A+
Sbjct: 321 LASL 324
>gi|443925216|gb|ELU44103.1| DNA replication factor [Rhizoctonia solani AG-1 IA]
Length = 302
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 127/248 (51%), Gaps = 40/248 (16%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I RFI++N LPHLLFYGPPGTGKT+TI+A AR++Y + +LELNASDDRGI
Sbjct: 50 DITSTIERFIEKNRLPHLLFYGPPGTGKTSTIVAVARRIYGN-DYKKQILELNASDDRGI 108
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVR---FCIIC 408
+VR+QI QFA T+T+ +KLIILDEAD MT AQ ALRR E+ R ++C
Sbjct: 109 EVVREQIKQFAETRTLFNKGFKLIILDEADMMTQAAQAALRRGREEGEYGYRERKVGLVC 168
Query: 409 ---------NYLSKIPPAIQSRCTRFRFGPLDSSLIM---SRLDYDDISFFNIIIW---- 452
Y I P + + G + +L + S YD I I
Sbjct: 169 LAFAFRSWMEYRVNITPEGKQALLKLSKGDMRRALNVLQASHAAYDRIDESEIYTCTGNP 228
Query: 453 --------------------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLV 492
Y + ++K E+GLAL D+L+ LE P + V L+
Sbjct: 229 HPSDIEHLVNSMMSDDFGTSYQLVMKMKTERGLALQDLLSGAYEYFEMLEFPPAARVHLL 288
Query: 493 LKMSDIEY 500
K++ IEY
Sbjct: 289 DKLATIEY 296
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 132/240 (55%), Gaps = 39/240 (16%)
Query: 89 EVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLA 146
EV E+ + VEKYRP TL ++VSHQDI STIE I ++ L L+ +
Sbjct: 20 EVPEENFKDDTLPWVEKYRPVTLSDVVSHQDITSTIERFIEKNRLPHLL-------FYGP 72
Query: 147 AGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLI 206
GT + + A+ K ++LELNASDDRGI +VR+QI QFA T+T+ +KLI
Sbjct: 73 PGTGKTSTIVAVARRIYGNDYKKQILELNASDDRGIEVVREQIKQFAETRTLFNKGFKLI 132
Query: 207 ILDEADAMTNDAQNALRR-----------------------------KLPVTPDGKKAII 237
ILDEAD MT AQ ALRR ++ +TP+GK+A++
Sbjct: 133 ILDEADMMTQAAQAALRRGREEGEYGYRERKVGLVCLAFAFRSWMEYRVNITPEGKQALL 192
Query: 238 DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYKI 297
LS GDMR+ LN+LQ++ A+ D ++E +Y G P ++I +++ ++++ Y++
Sbjct: 193 KLSKGDMRRALNVLQASHAAY-DRIDESEIYTCTGNPHPSDIEHLVNSMMSDDFGTSYQL 251
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 28/118 (23%)
Query: 53 KVNVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL-------------- 98
+VN+TP+GK+A++ LS GDMR+ LN+LQ++ A+ D ++E I+T
Sbjct: 180 RVNITPEGKQALLKLSKGDMRRALNVLQASHAAY-DRIDESEIYTCTGNPHPSDIEHLVN 238
Query: 99 ------------LVSRVEKYRPSTLDELVSHQ-DIISTIEIPESMLVDLVLKMSDIEY 143
LV +++ R L +L+S + +E P + V L+ K++ IEY
Sbjct: 239 SMMSDDFGTSYQLVMKMKTERGLALQDLLSGAYEYFEMLEFPPAARVHLLDKLATIEY 296
>gi|448509973|ref|ZP_21615854.1| replication factor C small subunit, partial [Halorubrum distributum
JCM 9100]
gi|445696314|gb|ELZ48405.1| replication factor C small subunit, partial [Halorubrum distributum
JCM 9100]
Length = 208
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 96/139 (69%), Gaps = 2/139 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +I ++++PHLLF GP G GKTT A AR++Y + + LELNASD RGI
Sbjct: 35 EIVERLQSYIAQDDVPHLLFSGPAGVGKTTAATAIAREIYGEDNWRGNFLELNASDQRGI 94
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA ++ ++++ LDE+D++T+DAQ+ALRR +E+F+ N RF + CNY
Sbjct: 95 DVVRDRIKGFA--RSSFGGDFRIVFLDESDSLTDDAQSALRRTMEQFSDNTRFILSCNYS 152
Query: 412 SKIPPAIQSRCTRFRFGPL 430
SKI IQSRC FRF PL
Sbjct: 153 SKIIDPIQSRCAVFRFSPL 171
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 93/178 (52%), Gaps = 27/178 (15%)
Query: 80 QSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMS 139
Q+AATA E+ +EKYRP TLD++ ++I+ ++ +
Sbjct: 7 QAAATATGREI-----------WIEKYRPQTLDDIHGQEEIVERLQ--------SYIAQD 47
Query: 140 DIEYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST 195
D+ + L +G + + +A A + + LELNASD RGI +VRD+I FA
Sbjct: 48 DVPHLLFSGPAGVGKTTAATAIAREIYGEDNWRGNFLELNASDQRGIDVVRDRIKGFA-- 105
Query: 196 KTMHKSSYKLIILDEADAMTNDAQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQS 253
++ ++++ LDE+D++T+DAQ+ALRR + D + I LS K+++ +QS
Sbjct: 106 RSSFGGDFRIVFLDESDSLTDDAQSALRRTMEQFSDNTRFI--LSCNYSSKIIDPIQS 161
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF PL + + + E++ VT G
Sbjct: 136 MEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEEIEVTDAG 195
Query: 61 KKAIIDLSDGDMR 73
A++ +DGDMR
Sbjct: 196 VDALVYAADGDMR 208
>gi|452001809|gb|EMD94268.1| hypothetical protein COCHEDRAFT_1028190 [Cochliobolus
heterostrophus C5]
Length = 1071
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 103/170 (60%), Gaps = 27/170 (15%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
++R + + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR
Sbjct: 711 LSRTMQSSNLPHMLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVRQ 770
Query: 357 QIFQFASTKTMHKSSY---------------------------KLIILDEADAMTNDAQN 389
++ FA + +Y K+I+LDEAD+MT DAQ+
Sbjct: 771 KVKDFARQQLSVAPTYNVMVEDKSGTGEGGMVRYRDKYPCPPFKIIVLDEADSMTQDAQS 830
Query: 390 ALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
ALRR +E ++ RFC++CNY+++I + SRC++FRF LD + R+
Sbjct: 831 ALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVKRV 880
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 39/155 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL E+ + + I ++ ++ S++ + L G + S ++A
Sbjct: 690 VEKYRPKTLSEVTAQDNTI--------QVLSRTMQSSNLPHMLFYGPPGTGKTSTILALA 741
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSY--------------- 203
+ K VLELNASD+RGI IVR ++ FA + +Y
Sbjct: 742 KELYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMVEDKSGTGEGGM 801
Query: 204 ------------KLIILDEADAMTNDAQNALRRKL 226
K+I+LDEAD+MT DAQ+ALRR +
Sbjct: 802 VRYRDKYPCPPFKIIVLDEADSMTQDAQSALRRTM 836
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF LD + R+ + E V +
Sbjct: 836 METYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVKRVSDIAALENVRLDDGV 895
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++ ++DGD+RK + LQSAA
Sbjct: 896 AEELVRVADGDLRKAITFLQSAA 918
>gi|435850632|ref|YP_007312218.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
gi|433661262|gb|AGB48688.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
Length = 333
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++ LPHLLF GPPG GKT T ++ A++L+ + + ELNASD+RGI +VR
Sbjct: 42 RLKSYVKSRNLPHLLFSGPPGVGKTATAVSIAKELFADS-WRENFTELNASDERGIDVVR 100
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+I FA T + + +K+I LDEADA+T+DAQ ALRR +E++T N RF + CNY SKI
Sbjct: 101 TKIKSFAKTSPIGGADFKIIFLDEADALTSDAQAALRRTMERYTNNCRFILSCNYSSKII 160
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSRC +RF PL + R+ +
Sbjct: 161 EPIQSRCAVYRFRPLSDDAVTERVRF 186
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 102/189 (53%), Gaps = 28/189 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E++T N RF + CNY SKI IQSRC +RF PL + R+ +V E + V DG
Sbjct: 140 MERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAVTERVRFVASNEGIEVATDG 199
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVS------------------- 101
+AI ++ GDMRK +N LQ+A+ + V++DTI+ + +
Sbjct: 200 MEAIKYVAQGDMRKAINALQAASLVD-NVVHKDTIYKITATARPEQITDLINTALSGNFM 258
Query: 102 RVEKYRPS-TLDELVSHQDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
KY LD+ +S +D++ I IP+ +V+L+ + ++++R+A G +E+I
Sbjct: 259 AARKYLDELLLDQGLSGEDVVGQIYRAMFNISIPQEKMVELIDVIGEVDFRIAEGANERI 318
Query: 154 QLSALIAAF 162
QL ALIA F
Sbjct: 319 QLEALIAHF 327
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 105/236 (44%), Gaps = 63/236 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP LD++V + I+ ++ + L L+ + A S +L A
Sbjct: 22 IEKYRPMRLDDIVGQTEAIARLKSYVKSRNLPHLLFSGPPGVGKTATAVSIAKELFA--- 78
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+S R+ ELNASD+RGI +VR +I FA T + + +K+I LDEADA+T+DAQ
Sbjct: 79 --DSWRENF--TELNASDERGIDVVRTKIKSFAKTSPIGGADFKIIFLDEADALTSDAQA 134
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR +
Sbjct: 135 ALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAVTERVRFVASNEGIE 194
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
V DG +AI ++ GDMRK +N LQ+A+ + V++DT+Y +IT+++
Sbjct: 195 VATDGMEAIKYVAQGDMRKAINALQAASLVD-NVVHKDTIYKITATARPEQITDLI 249
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 44/64 (68%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+ E+ +++GL+ D++ +I + + IP+ +V+L+ + ++++R+A G +E+IQL AL
Sbjct: 264 LDELLLDQGLSGEDVVGQIYRAMFNISIPQEKMVELIDVIGEVDFRIAEGANERIQLEAL 323
Query: 516 IAAF 519
IA F
Sbjct: 324 IAHF 327
>gi|406603613|emb|CCH44868.1| Replication factor C small subunit [Wickerhamomyces ciferrii]
Length = 256
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/102 (68%), Positives = 78/102 (76%)
Query: 339 MVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF 398
MVLELNASDDRGI +VR+QI FAST + YKLIILDEADAMTN AQNALRRIIEK+
Sbjct: 1 MVLELNASDDRGIDVVRNQIKNFASTMQIFSKGYKLIILDEADAMTNVAQNALRRIIEKY 60
Query: 399 TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
T N RFCI+ NY K+ PA+ SRCTRFRF PL S I L+
Sbjct: 61 TKNTRFCILANYAHKLNPALLSRCTRFRFSPLTESSIQENLN 102
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 104/189 (55%), Gaps = 29/189 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY K+ PA+ SRCTRFRF PL S I L+ +I +E++ +T D
Sbjct: 57 IEKYTKNTRFCILANYAHKLNPALLSRCTRFRFSPLTESSIQENLNKIIIKEQLKLTNDA 116
Query: 61 KKAIIDLSDGDMRKVLNILQS--AATAHADEVNEDTIF------------TLL------- 99
+ A++ LS GDMRK LN+LQ+ AA +E++E+ I+ T+L
Sbjct: 117 QAALLKLSKGDMRKALNVLQACKAAIDEGNEISEEMIYESVGAPHPKDIETILDSILKDD 176
Query: 100 ----VSRVEKYRP----STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE 151
+S + K + + +D L +I+ ++ +++ + +IEY ++ G +E
Sbjct: 177 WSSSISTLTKIKQLKGLALIDLLQGFVEILDQYQLKTRTRAEILKGLGEIEYAISKGGNE 236
Query: 152 KIQLSALIA 160
KIQ SA I
Sbjct: 237 KIQSSASIG 245
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 87/174 (50%), Gaps = 55/174 (31%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRR------ 224
VLELNASDDRGI +VR+QI FAST + YKLIILDEADAMTN AQNALRR
Sbjct: 2 VLELNASDDRGIDVVRNQIKNFASTMQIFSKGYKLIILDEADAMTNVAQNALRRIIEKYT 61
Query: 225 -----------------------------------------------KLPVTPDGKKAII 237
+L +T D + A++
Sbjct: 62 KNTRFCILANYAHKLNPALLSRCTRFRFSPLTESSIQENLNKIIIKEQLKLTNDAQAALL 121
Query: 238 DLSDGDMRKVLNILQS--AATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNE 289
LS GDMRK LN+LQ+ AA +E++E+ +Y SVG P +I IL +L +
Sbjct: 122 KLSKGDMRKALNVLQACKAAIDEGNEISEEMIYESVGAPHPKDIETILDSILKD 175
>gi|310831185|ref|YP_003969828.1| putative replication factor C subunit [Cafeteria roenbergensis
virus BV-PW1]
gi|309386369|gb|ADO67229.1| putative replication factor C subunit [Cafeteria roenbergensis
virus BV-PW1]
Length = 320
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 95/135 (70%), Gaps = 1/135 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I + + + LP+L+F+G PGTGKT+ I + A KL Q + +VLELNASDDRGI ++RD
Sbjct: 38 IYQMVKKGVLPNLIFHGSPGTGKTSFIFSLA-KLIFGDQIDNLVLELNASDDRGINVIRD 96
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
+I F S + S KL+ILDEADAMT +AQ AL ++EK+ VRFC+ICNY KI
Sbjct: 97 EIKDFTSKDNLFGSGLKLVILDEADAMTQEAQLALIYLMEKYCEKVRFCLICNYYYKILD 156
Query: 417 AIQSRCTRFRFGPLD 431
+I+SRC+ FRF PLD
Sbjct: 157 SIKSRCSVFRFLPLD 171
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 24/187 (12%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+ VRFC+ICNY KI +I+SRC+ FRF PLD ++ + ++++EK+N+
Sbjct: 135 MEKYCEKVRFCLICNYYYKILDSIKSRCSVFRFLPLDINISTIIIKDILKKEKINLNSKT 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNE---------------DTIFTLLVSRVEK 105
I+ GD+RK +N+ QS ++N I +L + K
Sbjct: 195 IDKIVHFGHGDIRKSINLCQSICITEK-KINTKFINLLIGDISDSEIKKIIKILYDKNIK 253
Query: 106 YRP------STLDEL-VSHQDIISTI-EIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 157
YR LD+ +S ++I+ + + +L D ++K++++EY++ T K L
Sbjct: 254 YRKKFTLILKYLDKTGISLSNLINIVFNNMDDLLSDKIIKLAELEYKVKQSTFSKTYLYL 313
Query: 158 LIAAFNS 164
+A F+S
Sbjct: 314 FVAIFHS 320
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 69/122 (56%), Gaps = 9/122 (7%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP+ ++ + +TI + + +L +L+ S TS L+ LI
Sbjct: 17 IEKYRPTNFKDIKGQNLVKNTIYQMVKKGVLPNLIFHGSP----GTGKTSFIFSLAKLI- 71
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
F D L VLELNASDDRGI ++RD+I F S + S KL+ILDEADAMT +AQ
Sbjct: 72 -FGDQIDNL-VLELNASDDRGINVIRDEIKDFTSKDNLFGSGLKLVILDEADAMTQEAQL 129
Query: 221 AL 222
AL
Sbjct: 130 AL 131
>gi|448342324|ref|ZP_21531276.1| replication factor C small subunit [Natrinema gari JCM 14663]
gi|445626315|gb|ELY79664.1| replication factor C small subunit [Natrinema gari JCM 14663]
Length = 330
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 110/176 (62%), Gaps = 17/176 (9%)
Query: 274 PTKTEITNILRWL----------LNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P KTE+ W+ + D+ ++ ++++++LPHLLF GP GTGKTT
Sbjct: 13 PGKTEV-----WIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAA 67
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
+ AR++Y + LELNASD RGI +VRD+I FA + + S+++I LDEADA+
Sbjct: 68 KSIAREVYDD-DWQENFLELNASDQRGIDVVRDRIKDFARS-SFGGYSHRIIFLDEADAL 125
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
T+DAQ+ALRR +E+F+ N RF + CNY S+I IQSRC FRF L + I +++
Sbjct: 126 TSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTADAIEAQV 181
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 100/193 (51%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF L + I +++ + E + VT DG
Sbjct: 137 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTADAIEAQVREIAATEDIAVTDDG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ-- 118
A++ +DGDMRK +N LQ+AA + V+E T+F + + RP ++ +V H
Sbjct: 197 VDALVYAADGDMRKAINALQAAAV-MGETVDEGTVFAITAT----ARPEEVEAMVEHAID 251
Query: 119 ----------------------DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
D+I + ++PE V L+ ++ +++YR+ G
Sbjct: 252 GDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEGA 311
Query: 150 SEKIQLSALIAAF 162
+E++QL A++A+
Sbjct: 312 NERLQLEAMLASL 324
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 102/222 (45%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP LD++ H DI+ ++ ++ D+ + L AG + + +A +
Sbjct: 20 IEKYRPERLDDIKGHTDIVPRLKN--------YVEQDDLPHLLFAGPAGTGKTTAAKSIA 71
Query: 163 NSARD---KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D + LELNASD RGI +VRD+I FA + + S+++I LDEADA+T+DAQ
Sbjct: 72 REVYDDDWQENFLELNASDQRGIDVVRDRIKDFARS-SFGGYSHRIIFLDEADALTSDAQ 130
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 131 SALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTADAIEAQVREIAATEDI 190
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
VT DG A++ +DGDMRK +N LQ+AA + V+E TV+
Sbjct: 191 AVTDDGVDALVYAADGDMRKAINALQAAAV-MGETVDEGTVF 231
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 41/64 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ E+GLA D++ ++ ++PE V L+ ++ +++YR+ G +E++QL A+
Sbjct: 261 LEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEGANERLQLEAM 320
Query: 516 IAAF 519
+A+
Sbjct: 321 LASL 324
>gi|71654128|ref|XP_815689.1| replication factor C, subunit 2 [Trypanosoma cruzi strain CL
Brener]
gi|70880763|gb|EAN93838.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 96/147 (65%), Gaps = 13/147 (8%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST- 364
+PH LF+GPPGTGKTT ILA AR+L+ ++ V E+NASDDRGI ++R+++ FA T
Sbjct: 53 MPHFLFHGPPGTGKTTAILAVARELFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTA 112
Query: 365 --KTMHK----------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
HK +KLIILDEADA+ DAQ ALRR++E F+ RFCI+CNY+S
Sbjct: 113 VGNVGHKVQSDGQVYPVPQFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVS 172
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+I I SRC ++RF PL + R+
Sbjct: 173 RIIDPIASRCAKYRFKPLVRETLYDRI 199
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 30/184 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ RFCI+CNY+S+I I SRC ++RF PL + R+ + + E++ V+
Sbjct: 155 MEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVRETLYDRIREIAKMEEITVSDAS 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF----TLLVSRVEKYRP-------- 108
+A+ +S GD+R + LQ A AH ++ ++ ++ + +EKY
Sbjct: 215 LEALDRVSGGDLRSAIMYLQYAQKAHGSDLTKENFLEVSGSVPMELLEKYLKALVTKDFD 274
Query: 109 ---STLDELVS------------HQDIISTIEIPESMLV--DLVLKMSDIEYRLAAGTSE 151
S E+V HQ I+ + P + LV + LK+ D+E RL+ G E
Sbjct: 275 GMYSLTKEIVGQGFPASQLLSQLHQYIVGS-SCPLNSLVRSRIALKLCDVERRLSDGGDE 333
Query: 152 KIQL 155
+QL
Sbjct: 334 FLQL 337
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL E+ S ++ + + + M + GT + + A+
Sbjct: 22 VEKYRPMTLSEVKSQEEAVCALRAS----LQSSASMPHFLFHGPPGTGKTTAILAVAREL 77
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST---KTMHK----------SSYKLIIL 208
F V E+NASDDRGI ++R+++ FA T HK +KLIIL
Sbjct: 78 FGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGNVGHKVQSDGQVYPVPQFKLIIL 137
Query: 209 DEADAMTNDAQNALRRKL 226
DEADA+ DAQ ALRR +
Sbjct: 138 DEADALLPDAQAALRRMM 155
>gi|71408237|ref|XP_806535.1| replication factor C, subunit 2 [Trypanosoma cruzi strain CL
Brener]
gi|70870309|gb|EAN84684.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 96/147 (65%), Gaps = 13/147 (8%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST- 364
+PH LF+GPPGTGKTT ILA AR+L+ ++ V E+NASDDRGI ++R+++ FA T
Sbjct: 53 MPHFLFHGPPGTGKTTAILAVARELFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTA 112
Query: 365 --KTMHK----------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
HK +KLIILDEADA+ DAQ ALRR++E F+ RFCI+CNY+S
Sbjct: 113 VGSVGHKVQSDGQVYPVPQFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVS 172
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+I I SRC ++RF PL + R+
Sbjct: 173 RIIDPIASRCAKYRFKPLVRETLYDRI 199
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 90/184 (48%), Gaps = 30/184 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ RFCI+CNY+S+I I SRC ++RF PL + R+ + + E++ V+
Sbjct: 155 MEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVRETLYDRIREIAKMEEITVSDAS 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF----TLLVSRVEKYRP-------- 108
+A+ +S GD+R + LQ A AH ++ ++ ++ + +EKY
Sbjct: 215 LEALDRVSGGDLRSAIMYLQYAQKAHGSDLTKENFLEVSGSVPMELLEKYLKALVTKDFD 274
Query: 109 ---STLDELVS------------HQDIISTIEIPESMLV--DLVLKMSDIEYRLAAGTSE 151
S E+V HQ II + P + LV + LK+ D+E RL+ G E
Sbjct: 275 GMYSLTKEIVGQGFPASQLLSQLHQYIIGS-SCPLNSLVRSRIALKLCDVERRLSDGGDE 333
Query: 152 KIQL 155
+QL
Sbjct: 334 FLQL 337
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL E+ S ++ + + + M + GT + + A+
Sbjct: 22 VEKYRPMTLSEVKSQEEAVCALRAS----LQPSASMPHFLFHGPPGTGKTTAILAVAREL 77
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST---KTMHK----------SSYKLIIL 208
F V E+NASDDRGI ++R+++ FA T HK +KLIIL
Sbjct: 78 FGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGSVGHKVQSDGQVYPVPQFKLIIL 137
Query: 209 DEADAMTNDAQNALRRKL 226
DEADA+ DAQ ALRR +
Sbjct: 138 DEADALLPDAQAALRRMM 155
>gi|407851932|gb|EKG05623.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 96/147 (65%), Gaps = 13/147 (8%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST- 364
+PH LF+GPPGTGKTT ILA AR+L+ ++ V E+NASDDRGI ++R+++ FA T
Sbjct: 53 MPHFLFHGPPGTGKTTAILAVARELFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTA 112
Query: 365 --KTMHK----------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
HK +KLIILDEADA+ DAQ ALRR++E F+ RFCI+CNY+S
Sbjct: 113 VGNVGHKVQSDGQVYPVPQFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVS 172
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+I I SRC ++RF PL + R+
Sbjct: 173 RIIDPIASRCAKYRFKPLVRETLYDRI 199
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 38/188 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ RFCI+CNY+S+I I SRC ++RF PL + R+ + + E++ V+
Sbjct: 155 MEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVRETLYDRIREIAKMEEITVSDAS 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF----TLLVSRVEKYRPSTLDELVS 116
+A+ +S GD+R + LQ A AH ++ ++ ++ + +EKY L LVS
Sbjct: 215 LEALDRVSGGDLRSAIMYLQYAQKAHGSDLTKENFLEVSGSVPMELLEKY----LKALVS 270
Query: 117 ---------------------------HQDIISTIEIPESMLV--DLVLKMSDIEYRLAA 147
HQ II + P + LV + LK+ D+E RL+
Sbjct: 271 KEFDGMYSLTKEIVGQGFPASQLLSQLHQYIIGS-SCPLNSLVRSRIALKLCDVERRLSD 329
Query: 148 GTSEKIQL 155
G E +QL
Sbjct: 330 GGDEFLQL 337
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL E+ S ++ + + + M + GT + + A+
Sbjct: 22 VEKYRPMTLSEVKSQEEAVCALRAS----LQSSASMPHFLFHGPPGTGKTTAILAVAREL 77
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST---KTMHK----------SSYKLIIL 208
F V E+NASDDRGI ++R+++ FA T HK +KLIIL
Sbjct: 78 FGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGNVGHKVQSDGQVYPVPQFKLIIL 137
Query: 209 DEADAMTNDAQNALRRKL 226
DEADA+ DAQ ALRR +
Sbjct: 138 DEADALLPDAQAALRRMM 155
>gi|443926001|gb|ELU44750.1| replication factor C [Rhizoctonia solani AG-1 IA]
Length = 1949
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 102/160 (63%), Gaps = 28/160 (17%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA--STKT 366
+LFYGPPGTGKT+TILA +R+L+ F VLELNASD+RGI IVR++I FA + +
Sbjct: 1 MLFYGPPGTGKTSTILALSRQLFGPELFRTRVLELNASDERGISIVREKIKNFARQTPRA 60
Query: 367 MHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK------- 413
+S YK+IILDEAD+MT DAQ ALRRI+E + RFC++CNY+++
Sbjct: 61 AEANSKYPCPPYKIIILDEADSMTQDAQAALRRIMENYAKITRFCLVCNYVTRCVELNLT 120
Query: 414 ------------IPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
I P + SRC++FRF PLD S SRL++
Sbjct: 121 GLFPSKYLVNRIIEP-LASRCSKFRFHPLDVSSTRSRLEH 159
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 22/156 (14%)
Query: 1 IEKFTTNVRFCIICNYLSK------------------ITPAIQSRCTRFRFGPLDSSLIM 42
+E + RFC++CNY+++ I + SRC++FRF PLD S
Sbjct: 95 MENYAKITRFCLVCNYVTRCVELNLTGLFPSKYLVNRIIEPLASRCSKFRFHPLDVSSTR 154
Query: 43 SRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSR 102
SRL+++++ E ++++P+ A+I SDGD+R+ + LQSAA A + +I +
Sbjct: 155 SRLEHIVKLENIDISPEAVTALISTSDGDLRRSITYLQSAARLSASQEPSPSISASDIQE 214
Query: 103 VEKYRPSTLDELVSHQDIISTIEIP-ESMLVDLVLK 137
+ P D +++ IE+P E M +D V K
Sbjct: 215 IAGVVP---DAVMNRFSSAVGIELPDEGMDIDRVAK 247
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 45/65 (69%), Gaps = 8/65 (12%)
Query: 168 KLEVLELNASDDRGIGIVRDQIFQFA--STKTMHKSS------YKLIILDEADAMTNDAQ 219
+ VLELNASD+RGI IVR++I FA + + +S YK+IILDEAD+MT DAQ
Sbjct: 29 RTRVLELNASDERGISIVREKIKNFARQTPRAAEANSKYPCPPYKIIILDEADSMTQDAQ 88
Query: 220 NALRR 224
ALRR
Sbjct: 89 AALRR 93
>gi|407416746|gb|EKF37786.1| replication factor C, subunit 2, putative [Trypanosoma cruzi
marinkellei]
Length = 445
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 96/147 (65%), Gaps = 13/147 (8%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST- 364
+PH LF+GPPGTGKTT ILA AR+L+ ++ V E+NASDDRGI ++R+++ FA T
Sbjct: 151 MPHFLFHGPPGTGKTTAILAVARELFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTA 210
Query: 365 --KTMHK----------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
HK +KLIILDEADA+ DAQ ALRR++E F+ RFCI+CNY+S
Sbjct: 211 VGNVGHKVQSDGQVYPVPQFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVS 270
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+I I SRC ++RF PL + R+
Sbjct: 271 RIIDPIASRCAKYRFKPLVREALYDRI 297
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 28/183 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ RFCI+CNY+S+I I SRC ++RF PL + R+ + + EK+ V+
Sbjct: 253 MEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVREALYDRIREIAKMEKLTVSDAS 312
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF----TLLVSRVEKYRP-------- 108
+A+ +S GD+R + LQ A AH ++ ++ ++ + +EKY
Sbjct: 313 LEALDRVSGGDLRSAIMYLQYAQKAHGSDLTKENFLEVSGSVPMELLEKYLKALVTKDFD 372
Query: 109 ---STLDELVSH-----------QDIISTIEIPESML--VDLVLKMSDIEYRLAAGTSEK 152
S ELV Q I ++ P + L + LK+ D+E RL+ G E
Sbjct: 373 GMYSLTKELVGQGFPASQLLSQLQQYIISLSCPLNSLERSRIALKLCDVERRLSDGGDEF 432
Query: 153 IQL 155
+QL
Sbjct: 433 LQL 435
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 104/272 (38%), Gaps = 71/272 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL+E+ S ++ +S + + M + GT + + A+
Sbjct: 120 VEKYRPMTLNEVKSQEEAVSALRAS----LQSSASMPHFLFHGPPGTGKTTAILAVAREL 175
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST---KTMHK----------SSYKLIIL 208
F V E+NASDDRGI ++R+++ FA T HK +KLIIL
Sbjct: 176 FGPDYVHSRVREMNASDDRGIQVIREKVKVFAQTAVGNVGHKVQSDGQVYPVPQFKLIIL 235
Query: 209 DEADAMTNDAQNALRR-------------------------------------------- 224
DEADA+ DAQ ALRR
Sbjct: 236 DEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVREALYD 295
Query: 225 ---------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPT 275
KL V+ +A+ +S GD+R + LQ A AH ++ ++ G
Sbjct: 296 RIREIAKMEKLTVSDASLEALDRVSGGDLRSAIMYLQYAQKAHGSDLTKENFLEVSGSVP 355
Query: 276 KTEITNILRWLLNESMDLCYKINRFIDENELP 307
+ L+ L+ + D Y + + + P
Sbjct: 356 MELLEKYLKALVTKDFDGMYSLTKELVGQGFP 387
>gi|282164500|ref|YP_003356885.1| replication factor C small subunit [Methanocella paludicola SANAE]
gi|282156814|dbj|BAI61902.1| replication factor C small subunit [Methanocella paludicola SANAE]
Length = 332
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++ LPHLLF GPPG GKT +A A+ ++ N ELNASD+RGI +VR
Sbjct: 38 RLKSYVKTGNLPHLLFSGPPGVGKTACAVALAKDMFGDTWQNNFT-ELNASDERGIDVVR 96
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+ I FA T + + +K+I LDEADA+T+DAQ+ALRR +E++T RF I CNY SKI
Sbjct: 97 NNIKNFARTAPLGDARFKIIFLDEADALTSDAQSALRRTMERYTATCRFIISCNYSSKII 156
Query: 416 PAIQSRCTRFRFGPL 430
IQSRC +RFGPL
Sbjct: 157 EPIQSRCAVYRFGPL 171
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 97/188 (51%), Gaps = 26/188 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E++T RF I CNY SKI IQSRC +RFGPL I + + + E + +T DG
Sbjct: 136 MERYTATCRFIISCNYSSKIIEPIQSRCAVYRFGPLGPKDIETMARRIEKGEGIKITKDG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRP------------ 108
AII ++ GDMR+ +N LQSA+T D E T +R ++
Sbjct: 196 LDAIIYVARGDMRRAVNALQSASTVSKDITAEAVYETTSTARPKEIEEMLKLALNGQFMD 255
Query: 109 --STLDEL-----VSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
+ LD+L +S DII I + E +LV LV ++ + ++RL G +E+IQ
Sbjct: 256 SRNKLDDLLIKYGLSGSDIIDQIYASMFSLGLDEDVLVALVDRIGEADFRLTEGGNERIQ 315
Query: 155 LSALIAAF 162
+ AL+A F
Sbjct: 316 VEALLAHF 323
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 128/290 (44%), Gaps = 88/290 (30%)
Query: 89 EVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG 148
E+ D ++T EKYRP TLDE++ + I+ ++ +K ++ + L +G
Sbjct: 10 EMASDDVWT------EKYRPKTLDEVIGQEQIVRRLK--------SYVKTGNLPHLLFSG 55
Query: 149 TSEKIQLSALIAAFNSARDKL------EVLELNASDDRGIGIVRDQIFQFASTKTMHKSS 202
+ + +A A+D ELNASD+RGI +VR+ I FA T + +
Sbjct: 56 PPGVGKTACAVAL---AKDMFGDTWQNNFTELNASDERGIDVVRNNIKNFARTAPLGDAR 112
Query: 203 YKLIILDEADAMTNDAQNALRRKL---------------------------------PVT 229
+K+I LDEADA+T+DAQ+ALRR + P+
Sbjct: 113 FKIIFLDEADALTSDAQSALRRTMERYTATCRFIISCNYSSKIIEPIQSRCAVYRFGPLG 172
Query: 230 P--------------------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYN 269
P DG AII ++ GDMR+ +N LQSA+T D + + VY
Sbjct: 173 PKDIETMARRIEKGEGIKITKDGLDAIIYVARGDMRRAVNALQSASTVSKD-ITAEAVYE 231
Query: 270 SVGYPTKTEITNILRWLLNESMDLCYKINRFID-ENELPHLLF-YGPPGT 317
+ EI +L+ LN +F+D N+L LL YG G+
Sbjct: 232 TTSTARPKEIEEMLKLALN---------GQFMDSRNKLDDLLIKYGLSGS 272
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 43/65 (66%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
K+ ++ I+ GL+ +DI+ +I + L + E +LV LV ++ + ++RL G +E+IQ+ A
Sbjct: 259 KLDDLLIKYGLSGSDIIDQIYASMFSLGLDEDVLVALVDRIGEADFRLTEGGNERIQVEA 318
Query: 515 LIAAF 519
L+A F
Sbjct: 319 LLAHF 323
>gi|448357101|ref|ZP_21545808.1| replication factor C small subunit [Natrialba chahannaoensis JCM
10990]
gi|445650274|gb|ELZ03200.1| replication factor C small subunit [Natrialba chahannaoensis JCM
10990]
Length = 339
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 99/144 (68%), Gaps = 2/144 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ R++++++LPHL+F GP GTGKTT A AR++Y + LELNASD RGI +VR
Sbjct: 50 RLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDD-DWRENFLELNASDQRGIDVVR 108
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA + +++I LDEADA+T+DAQ+ALRR +E+F+ N RF + CNY S+I
Sbjct: 109 DRIKDFARA-SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQII 167
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC FRF L + I +++
Sbjct: 168 DPIQSRCAVFRFTQLTETAIEAQV 191
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 101/193 (52%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF L + I +++ + + + VT DG
Sbjct: 147 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIAADQDIEVTDDG 206
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ-- 118
A++ +DGDMRK +N LQ+AA + V+E+T+F + + RP ++++V
Sbjct: 207 VDALVYAADGDMRKAINALQAAAV-MGETVDEETVFAITAT----ARPEEVEQMVDQAIA 261
Query: 119 ----------------------DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
D+I + +IPE V L+ ++ ++++R+ G
Sbjct: 262 GDFTAARASLEDLLTDRGLAGGDVIDQLHRSAWEFDIPEQETVRLLEQLGEVDFRITEGA 321
Query: 150 SEKIQLSALIAAF 162
+E++QL A++A+
Sbjct: 322 NERLQLEAMLASL 334
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 106/234 (45%), Gaps = 68/234 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP LDE+ H++I+ ++ ++ D+ + + AG + + +A A
Sbjct: 30 IEKYRPERLDEIKGHENIVPRLQ--------RYVEQDDLPHLMFAGPAGTGKTTAAQAIA 81
Query: 163 NSARD---KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D + LELNASD RGI +VRD+I FA + +++I LDEADA+T+DAQ
Sbjct: 82 REVYDDDWRENFLELNASDQRGIDVVRDRIKDFARA-SFGGYDHRIIFLDEADALTSDAQ 140
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 141 SALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIAADQDI 200
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY--NSVGYPTKTE 278
VT DG A++ +DGDMRK +N LQ+AA + V+E+TV+ + P + E
Sbjct: 201 EVTDDGVDALVYAADGDMRKAINALQAAAV-MGETVDEETVFAITATARPEEVE 253
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 41/64 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ ++GLA D++ ++ +IPE V L+ ++ ++++R+ G +E++QL A+
Sbjct: 271 LEDLLTDRGLAGGDVIDQLHRSAWEFDIPEQETVRLLEQLGEVDFRITEGANERLQLEAM 330
Query: 516 IAAF 519
+A+
Sbjct: 331 LASL 334
>gi|448354529|ref|ZP_21543285.1| replication factor C small subunit [Natrialba hulunbeirensis JCM
10989]
gi|445637417|gb|ELY90567.1| replication factor C small subunit [Natrialba hulunbeirensis JCM
10989]
Length = 339
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 99/144 (68%), Gaps = 2/144 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ R++++++LPHL+F GP GTGKTT A AR++Y + LELNASD RGI +VR
Sbjct: 50 RLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDD-DWRENFLELNASDQRGIDVVR 108
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA + +++I LDEADA+T+DAQ+ALRR +E+F+ N RF + CNY S+I
Sbjct: 109 DRIKDFARA-SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQII 167
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC FRF L + I +++
Sbjct: 168 DPIQSRCAVFRFTQLTETAIEAQV 191
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 101/193 (52%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF L + I +++ + + + VT DG
Sbjct: 147 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIAADQDIEVTDDG 206
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ-- 118
A++ +DGDMRK +N LQ+AA + V+E+T+F + + RP ++E+V
Sbjct: 207 VDALVYAADGDMRKAINALQAAAV-MGETVDEETVFAITAT----ARPEEVEEMVDQAIA 261
Query: 119 ----------------------DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
D+I + +IPE V L+ ++ ++++R+ G
Sbjct: 262 GDFTAARASLEDLLTDRGLAGGDVIDQLHRSAWEFDIPEKETVRLLERLGEVDFRITEGA 321
Query: 150 SEKIQLSALIAAF 162
+E++QL A++A+
Sbjct: 322 NERLQLEAMLASL 334
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 102/222 (45%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP LDE+ H++I+ ++ ++ D+ + + AG + + +A A
Sbjct: 30 IEKYRPEYLDEIKGHENIVPRLQ--------RYVEQDDLPHLMFAGPAGTGKTTAAQAIA 81
Query: 163 NSARD---KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D + LELNASD RGI +VRD+I FA + +++I LDEADA+T+DAQ
Sbjct: 82 REVYDDDWRENFLELNASDQRGIDVVRDRIKDFARA-SFGGYDHRIIFLDEADALTSDAQ 140
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 141 SALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIAADQDI 200
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
VT DG A++ +DGDMRK +N LQ+AA + V+E+TV+
Sbjct: 201 EVTDDGVDALVYAADGDMRKAINALQAAAV-MGETVDEETVF 241
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 41/64 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ ++GLA D++ ++ +IPE V L+ ++ ++++R+ G +E++QL A+
Sbjct: 271 LEDLLTDRGLAGGDVIDQLHRSAWEFDIPEKETVRLLERLGEVDFRITEGANERLQLEAM 330
Query: 516 IAAF 519
+A+
Sbjct: 331 LASL 334
>gi|289581577|ref|YP_003480043.1| replication factor C [Natrialba magadii ATCC 43099]
gi|448283016|ref|ZP_21474295.1| replication factor C small subunit [Natrialba magadii ATCC 43099]
gi|289531130|gb|ADD05481.1| Replication factor C [Natrialba magadii ATCC 43099]
gi|445574724|gb|ELY29212.1| replication factor C small subunit [Natrialba magadii ATCC 43099]
Length = 341
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 99/144 (68%), Gaps = 2/144 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ R++++++LPHL+F GP GTGKTT A AR++Y + LELNASD RGI +VR
Sbjct: 52 RLQRYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYDD-DWRENFLELNASDQRGIDVVR 110
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA + +++I LDEADA+T+DAQ+ALRR +E+F+ N RF + CNY S+I
Sbjct: 111 DRIKDFARA-SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQII 169
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC FRF L + I +++
Sbjct: 170 DPIQSRCAVFRFTQLTETAIEAQV 193
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 101/193 (52%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF L + I +++ + + + VT DG
Sbjct: 149 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIAADQDIEVTDDG 208
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ-- 118
A++ +DGDMRK +N LQ+AA + V+E+T+F + + RP ++E+V
Sbjct: 209 VDALVYAADGDMRKAINALQAAAV-MGETVDEETVFAITAT----ARPEEVEEMVEQAIA 263
Query: 119 ----------------------DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
D+I + +IPE V L+ ++ ++++R+ G
Sbjct: 264 GDFTAARASLEDLLTDRGLAGGDVIDQLHRSAWEFDIPEQETVRLLERLGEVDFRITEGA 323
Query: 150 SEKIQLSALIAAF 162
+E++QL A++A+
Sbjct: 324 NERLQLEAMLASL 336
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 102/222 (45%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP LDE+ H++I+ ++ ++ D+ + + AG + + +A A
Sbjct: 32 IEKYRPEYLDEIKGHENIVPRLQ--------RYVEQDDLPHLMFAGPAGTGKTTAAQAIA 83
Query: 163 NSARD---KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D + LELNASD RGI +VRD+I FA + +++I LDEADA+T+DAQ
Sbjct: 84 REVYDDDWRENFLELNASDQRGIDVVRDRIKDFARA-SFGGYDHRIIFLDEADALTSDAQ 142
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 143 SALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQLTETAIEAQVREIAADQDI 202
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
VT DG A++ +DGDMRK +N LQ+AA + V+E+TV+
Sbjct: 203 EVTDDGVDALVYAADGDMRKAINALQAAAV-MGETVDEETVF 243
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 41/64 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ ++GLA D++ ++ +IPE V L+ ++ ++++R+ G +E++QL A+
Sbjct: 273 LEDLLTDRGLAGGDVIDQLHRSAWEFDIPEQETVRLLERLGEVDFRITEGANERLQLEAM 332
Query: 516 IAAF 519
+A+
Sbjct: 333 LASL 336
>gi|311977902|ref|YP_003987022.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|82050828|sp|Q5UQ72.1|RFCS4_MIMIV RecName: Full=Putative replication factor C small subunit L510;
Short=RFC small subunit L510; AltName: Full=Clamp loader
small subunit L510
gi|55417124|gb|AAV50774.1| putative replication factor C subunit [Acanthamoeba polyphaga
mimivirus]
gi|308204876|gb|ADO18677.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|339061447|gb|AEJ34751.1| putative replication factor C subunit [Acanthamoeba polyphaga
mimivirus]
gi|351737669|gb|AEQ60704.1| putative replication factor C small subunit [Acanthamoeba
castellanii mamavirus]
gi|398257335|gb|EJN40943.1| putative replication factor C subunit [Acanthamoeba polyphaga
lentillevirus]
Length = 363
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/152 (48%), Positives = 99/152 (65%), Gaps = 11/152 (7%)
Query: 303 ENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362
+ E+ H LFYGPPGTGKT+ ILA R+++ K F V+E NASDDRGI VR++I A
Sbjct: 37 KGEMTHFLFYGPPGTGKTSAILAMGREIF-KEHFQNRVIEFNASDDRGINAVREKITNEA 95
Query: 363 STKTMHKS--------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
SYK+IILDEAD+MT++AQ+ALR IIE+++T RFC ICNY++KI
Sbjct: 96 KKYVAEIKLEDGTIIPSYKIIILDEADSMTDEAQDALRVIIEQYSTATRFCFICNYITKI 155
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLDYDDISF 446
AI+SRC+ F L ++ +L +DIS
Sbjct: 156 TDAIKSRCSSVYFKKLSDECMVEKL--NDISL 185
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE+++T RFC ICNY++KIT AI+SRC+ F L ++ +L+ + +E + + +
Sbjct: 136 IEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDECMVEKLNDISLKESMELPKNI 195
Query: 61 KKAIIDLSDGDMRKVLNILQS 81
IID+S+GDMRK + +LQ+
Sbjct: 196 LHTIIDVSNGDMRKAIMLLQN 216
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 25/138 (18%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V +EKYRP L+++ Q+++ L K ++ + L G + SA++
Sbjct: 7 VPWIEKYRPKKLEDITQSQNLLD--------LFKNSTKKGEMTHFLFYGPPGTGKTSAIL 58
Query: 160 AAFNSARDKLE------VLELNASDDRGIGIVRDQIFQFASTKTMHKS--------SYKL 205
A R+ + V+E NASDDRGI VR++I A SYK+
Sbjct: 59 AM---GREIFKEHFQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKI 115
Query: 206 IILDEADAMTNDAQNALR 223
IILDEAD+MT++AQ+ALR
Sbjct: 116 IILDEADSMTDEAQDALR 133
>gi|396471841|ref|XP_003838965.1| hypothetical protein LEMA_P026380.1 [Leptosphaeria maculans JN3]
gi|312215534|emb|CBX95486.1| hypothetical protein LEMA_P026380.1 [Leptosphaeria maculans JN3]
Length = 434
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 103/180 (57%), Gaps = 37/180 (20%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
++R + + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR
Sbjct: 57 LSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYGPDLLKSRVLELNASDERGISIVRQ 116
Query: 357 QIFQFASTKTMHKSSY-------------------------------------KLIILDE 379
++ FA + SY K+I+LDE
Sbjct: 117 KVKDFARQQLSLAPSYSVMVEDKAAAGRGEDEAAGTGEKKMARYRDVYPCPPFKIIVLDE 176
Query: 380 ADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
AD+MT DAQ+ALRR +E ++ RFC++CNY+++I + SRC++FRF LD + R+
Sbjct: 177 ADSMTQDAQSALRRTMETYSRVTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVRRV 236
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 51/83 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF LD + R+ + E V + P
Sbjct: 192 METYSRVTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVRRVADIARLEGVALDPGV 251
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++ +++GD+RK + LQS A
Sbjct: 252 AEELVRVAEGDLRKAITFLQSGA 274
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 77/165 (46%), Gaps = 49/165 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL E V+ QD +TI+I + L+ S++ + L G + S ++A
Sbjct: 36 VEKYRPKTLSE-VTAQD--NTIQI-----LSRTLQSSNLPHMLFYGPPGTGKTSTILALA 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSY--------------- 203
+ K VLELNASD+RGI IVR ++ FA + SY
Sbjct: 88 KQLYGPDLLKSRVLELNASDERGISIVRQKVKDFARQQLSLAPSYSVMVEDKAAAGRGED 147
Query: 204 ----------------------KLIILDEADAMTNDAQNALRRKL 226
K+I+LDEAD+MT DAQ+ALRR +
Sbjct: 148 EAAGTGEKKMARYRDVYPCPPFKIIVLDEADSMTQDAQSALRRTM 192
>gi|322705612|gb|EFY97196.1| activator 1 41 kDa subunit [Metarhizium anisopliae ARSEF 23]
Length = 314
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/142 (49%), Positives = 96/142 (67%), Gaps = 10/142 (7%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS----- 363
+LFYGPPGTGKT+TILA A++L+ + VLELNASD+RGI IVR+++ FA
Sbjct: 1 MLFYGPPGTGKTSTILALAKELFGPEMMKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 364 -----TKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418
+K +K+IILDEAD+MT DAQ+ALRR +E ++ RFC+ICNY+++I +
Sbjct: 61 PAPGYSKKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 120
Query: 419 QSRCTRFRFGPLDSSLIMSRLD 440
SRC++FRF LD RL+
Sbjct: 121 ASRCSKFRFKSLDQGNARKRLE 142
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD RL+ + E V +
Sbjct: 97 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARKRLEEIASAEGVPLEDGA 156
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+RK + LQSAA
Sbjct: 157 IDALIRCSEGDLRKAITFLQSAA 179
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 46/75 (61%), Gaps = 10/75 (13%)
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS----------TKTMHKSSYKLIILDEA 211
F K VLELNASD+RGI IVR+++ FA +K +K+IILDEA
Sbjct: 23 FGPEMMKSRVLELNASDERGISIVREKVKNFARMQLTNPAPGYSKKYPCPPFKIIILDEA 82
Query: 212 DAMTNDAQNALRRKL 226
D+MT DAQ+ALRR +
Sbjct: 83 DSMTQDAQSALRRTM 97
>gi|300709601|ref|YP_003735415.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|448297629|ref|ZP_21487674.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|299123284|gb|ADJ13623.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|445578957|gb|ELY33355.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
Length = 329
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 100/144 (69%), Gaps = 2/144 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ R+++ ++LP+LLF G G GKTT A AR++Y + + LELNASDDRGI +VR
Sbjct: 39 RLERYVERDDLPNLLFSGSAGIGKTTCATAIAREVYGE-DWRDNFLELNASDDRGIDVVR 97
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+I +FA + SY++I LDEAD++T+DAQ+ALRR +E+F++N RF + CNY SKI
Sbjct: 98 GRIKEFARA-SFGGYSYRIIFLDEADSLTSDAQSALRRTMEQFSSNTRFILSCNYSSKII 156
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC FRF P+ + + R+
Sbjct: 157 DPIQSRCAVFRFSPISDAAVGERI 180
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 104/192 (54%), Gaps = 28/192 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F++N RF + CNY SKI IQSRC FRF P+ + + R+ + E + +T G
Sbjct: 136 MEQFSSNTRFILSCNYSSKIIDPIQSRCAVFRFSPISDAAVGERIREIAHIEGIEITDGG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVS-RVEKYRP----------- 108
+A++ +DGDMR+ +N LQ+AA + V+E+ ++T+ + R E+
Sbjct: 196 VEALVYAADGDMRRAVNSLQAAAV-MGETVDEEVVYTITATARPEEIEAMVTSALEGDFT 254
Query: 109 ---STLDELVSHQ-----DIISTIE-------IPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+TLD+L+S++ DII + + + V + ++ + +YR+ G +E+I
Sbjct: 255 TARATLDDLLSNKGLSGGDIIDQLHRSVWDLGLSDREAVRTLDRIGETDYRITEGANERI 314
Query: 154 QLSALIAAFNSA 165
QL A +A+ A
Sbjct: 315 QLEAFLASLTLA 326
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 100/221 (45%), Gaps = 64/221 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL E++ ++I +E + L +L+ S AG + +A+
Sbjct: 19 VEKYRPGTLGEVIGQEEITDRLERYVERDDLPNLLFSGS-------AGIGKTTCATAIAR 71
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELNASDDRGI +VR +I +FA + SY++I LDEAD++T+DAQ+
Sbjct: 72 EVYGEDWRDNFLELNASDDRGIDVVRGRIKEFARA-SFGGYSYRIIFLDEADSLTSDAQS 130
Query: 221 ALRRKL-----------------------------------------------------P 227
ALRR +
Sbjct: 131 ALRRTMEQFSSNTRFILSCNYSSKIIDPIQSRCAVFRFSPISDAAVGERIREIAHIEGIE 190
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
+T G +A++ +DGDMR+ +N LQ+AA + V+E+ VY
Sbjct: 191 ITDGGVEALVYAADGDMRRAVNSLQAAAV-MGETVDEEVVY 230
>gi|322697954|gb|EFY89728.1| activator 1 41 kDa subunit [Metarhizium acridum CQMa 102]
Length = 314
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 97/142 (68%), Gaps = 10/142 (7%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH 368
+LFYGPPGTGKT+TILA A++L+ + VLELNASD+RGI IVR+++ FA + +
Sbjct: 1 MLFYGPPGTGKTSTILALAKELFGPEMMKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 369 KSS----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418
+ +K+IILDEAD+MT DAQ+ALRR +E ++ RFC+ICNY+++I +
Sbjct: 61 PTPGYSKRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 120
Query: 419 QSRCTRFRFGPLDSSLIMSRLD 440
SRC++FRF LD RL+
Sbjct: 121 ASRCSKFRFKSLDQGNARKRLE 142
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD RL+ + E V +
Sbjct: 97 METYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARKRLEEIASAEGVPLEDGA 156
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
A+I S+GD+RK + LQSAA
Sbjct: 157 IDALIRCSEGDLRKAITFLQSAA 179
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 10/75 (13%)
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----------YKLIILDEA 211
F K VLELNASD+RGI IVR+++ FA + + + +K+IILDEA
Sbjct: 23 FGPEMMKSRVLELNASDERGISIVREKVKNFARMQLTNPTPGYSKRYPCPPFKIIILDEA 82
Query: 212 DAMTNDAQNALRRKL 226
D+MT DAQ+ALRR +
Sbjct: 83 DSMTQDAQSALRRTM 97
>gi|11499642|ref|NP_070884.1| replication factor C small subunit [Archaeoglobus fulgidus DSM
4304]
gi|42559325|sp|O28219.1|RFCS_ARCFU RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=afRFC small subunit; Short=afRFCsm
gi|110590966|pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
gi|110590967|pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
gi|110590968|pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
gi|110590969|pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
gi|110590970|pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
gi|110590971|pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
gi|110590972|pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
gi|110590973|pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
gi|110590974|pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
gi|2648471|gb|AAB89191.1| activator 1, replication factor C, 35 KD subunit [Archaeoglobus
fulgidus DSM 4304]
Length = 319
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 99/148 (66%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +++ +PHLLF GPPGTGKT T +A AR L+ + + +E+NASD+RGI
Sbjct: 24 EVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERGI 82
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR +I +FA T + + +K+I LDEADA+T DAQ ALRR +E ++ + RF + CNY+
Sbjct: 83 DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
S+I IQSRC FRF P+ + RL
Sbjct: 143 SRIIEPIQSRCAVFRFKPVPKEAMKKRL 170
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 104/195 (53%), Gaps = 36/195 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ + RF + CNY+S+I IQSRC FRF P+ + RL + E+E V +T DG
Sbjct: 126 MEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDG 185
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
+A+I +S GD RK +N LQ AA A + V+ DTI+ + + RP + EL+
Sbjct: 186 LEALIYISGGDFRKAINALQGAA-AIGEVVDADTIYQITAT----ARPEEMTELIQTALK 240
Query: 116 -------------------SHQDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGT 149
S +DI++ ++ I +S+ V L+ K+ ++++RL G
Sbjct: 241 GNFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGA 300
Query: 150 SEKIQLSALIAAFNS 164
+E+IQL A +A ++
Sbjct: 301 NERIQLDAYLAYLST 315
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 111/245 (45%), Gaps = 71/245 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TLDE+V ++I ++ ++ +I + L +G + + IA
Sbjct: 8 VEKYRPRTLDEVVGQDEVIQRLK--------GYVERKNIPHLLFSGPPGTGKTATAIAL- 58
Query: 163 NSARD------KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
ARD + +E+NASD+RGI +VR +I +FA T + + +K+I LDEADA+T
Sbjct: 59 --ARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA 116
Query: 217 DAQNALRRKL---------------------------------PV--------------- 228
DAQ ALRR + PV
Sbjct: 117 DAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK 176
Query: 229 -----TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
T DG +A+I +S GD RK +N LQ AA A + V+ DT+Y E+T ++
Sbjct: 177 EGVKITEDGLEALIYISGGDFRKAINALQGAA-AIGEVVDADTIYQITATARPEEMTELI 235
Query: 284 RWLLN 288
+ L
Sbjct: 236 QTALK 240
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 39/61 (63%)
Query: 461 IEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 520
+E G++ DI+ ++ + + I +S+ V L+ K+ ++++RL G +E+IQL A +A +
Sbjct: 255 VEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLS 314
Query: 521 S 521
+
Sbjct: 315 T 315
>gi|433637069|ref|YP_007282829.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
gi|433288873|gb|AGB14696.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
Length = 329
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 109/174 (62%), Gaps = 19/174 (10%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ +++++++LPHL+F GP G GKT + A AR+LY + + LELNASD+RGI +VR
Sbjct: 39 RLRKYVEQDDLPHLMFAGPAGVGKTASAGAIARELYGE-DWREHFLELNASDERGIDVVR 97
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA + + Y++I LDEADA+T+DAQ+ALRR +E+F+ N RF + CNY S+I
Sbjct: 98 DRIKNFARS-SFGGVKYRIIFLDEADALTSDAQSALRRTMEQFSHNTRFILSCNYSSQII 156
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTD 469
IQSRC FRF L I + + +EI +G++LTD
Sbjct: 157 DPIQSRCAVFRFTELSDEAIEA-----------------QTREIAETEGISLTD 193
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 105/195 (53%), Gaps = 28/195 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF L I ++ + E E +++T DG
Sbjct: 136 MEQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEAQTREIAETEGISLTDDG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVS----RVEKY---------- 106
A++ + GDMRK +N LQ+AA +EV+E +F + + VEK
Sbjct: 196 VDALVYAAAGDMRKAINGLQAAAVM-GEEVDEAAVFAITSTARPEEVEKMVDQAIGGDFT 254
Query: 107 -RPSTLDELVSHQ-----DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+TL++L++ + D+I + ++ E V L+ ++ +++YR+ G +E++
Sbjct: 255 AARATLEDLLTDRGLAGGDVIDQLHRSAWEFDLGEHETVRLLERLGEVDYRITEGANERL 314
Query: 154 QLSALIAAFNSARDK 168
QL A++A A D+
Sbjct: 315 QLEAMLAHLALASDE 329
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 106/234 (45%), Gaps = 68/234 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE--KIQLSALIA 160
+EKYRP +LD++ H++I+ + ++ D+ + + AG + K + IA
Sbjct: 19 IEKYRPESLDDVKGHENIVPRLR--------KYVEQDDLPHLMFAGPAGVGKTASAGAIA 70
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D E LELNASD+RGI +VRD+I FA + + Y++I LDEADA+T+DAQ
Sbjct: 71 RELYGEDWREHFLELNASDERGIDVVRDRIKNFARS-SFGGVKYRIIFLDEADALTSDAQ 129
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 130 SALRRTMEQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEAQTREIAETEGI 189
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY--NSVGYPTKTE 278
+T DG A++ + GDMRK +N LQ+AA +EV+E V+ S P + E
Sbjct: 190 SLTDDGVDALVYAAAGDMRKAINGLQAAAVM-GEEVDEAAVFAITSTARPEEVE 242
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 42/70 (60%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ ++GLA D++ ++ ++ E V L+ ++ +++YR+ G +E++QL A+
Sbjct: 260 LEDLLTDRGLAGGDVIDQLHRSAWEFDLGEHETVRLLERLGEVDYRITEGANERLQLEAM 319
Query: 516 IAAFNSARDK 525
+A A D+
Sbjct: 320 LAHLALASDE 329
>gi|209877196|ref|XP_002140040.1| replication factor C, subunit 4 [Cryptosporidium muris RN66]
gi|209555646|gb|EEA05691.1| replication factor C, subunit 4, putative [Cryptosporidium muris
RN66]
Length = 335
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 93/146 (63%), Gaps = 10/146 (6%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
+PHLLFYGPPGTGKT+ ILA R+L+ +F LELNASD+RGI +VR++I +
Sbjct: 41 MPHLLFYGPPGTGKTSAILALCRELFGNDEFRNRTLELNASDERGINVVREKIKTWTRQV 100
Query: 366 TMHKS----------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+K++ILDEA+ MT+DAQ+ALRRIIE N RF IICNY++KI
Sbjct: 101 VYSNKINPITGRKIPPWKVVILDEAEMMTSDAQSALRRIIETSAKNTRFVIICNYINKII 160
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC +FRF P+ RL++
Sbjct: 161 EPLASRCAKFRFQPISFKAQRERLNF 186
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 54/89 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE N RF IICNY++KI + SRC +FRF P+ RL+++ +QE + P+
Sbjct: 140 IETSAKNTRFVIICNYINKIIEPLASRCAKFRFQPISFKAQRERLNFICQQENIICEPEV 199
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE 89
++DLS GD+R+ + ILQS +++E
Sbjct: 200 FDILVDLSQGDLRRAITILQSTCELYSEE 228
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 105/259 (40%), Gaps = 77/259 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP + ++ +++ ++ VL+ ++ + L G + SA++A
Sbjct: 11 VEKYRPRQIADIYHQTEVVK--------MLKNVLEFGNMPHLLFYGPPGTGKTSAILALC 62
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS----------SYKLIIL 208
F + + LELNASD+RGI +VR++I + +K++IL
Sbjct: 63 RELFGNDEFRNRTLELNASDERGINVVREKIKTWTRQVVYSNKINPITGRKIPPWKVVIL 122
Query: 209 DEADAMTNDAQNALRR------------------------------KLPVTPDGKKA--- 235
DEA+ MT+DAQ+ALRR K P KA
Sbjct: 123 DEAEMMTSDAQSALRRIIETSAKNTRFVIICNYINKIIEPLASRCAKFRFQPISFKAQRE 182
Query: 236 --------------------IIDLSDGDMRKVLNILQSAATAHADE--VNEDTVYNSVGY 273
++DLS GD+R+ + ILQS +++E V +V G
Sbjct: 183 RLNFICQQENIICEPEVFDILVDLSQGDLRRAITILQSTCELYSEEEIVKATSVIEVAGI 242
Query: 274 PTKTEITNILRWLLNESMD 292
P + I+ + + +D
Sbjct: 243 PPLSVAEGIMNFCFTKDID 261
>gi|448376175|ref|ZP_21559459.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
gi|445658193|gb|ELZ11016.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
Length = 329
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 109/174 (62%), Gaps = 19/174 (10%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ +++++++LPHL+F GP G GKT + A AR+LY + + LELNASD+RGI +VR
Sbjct: 39 RLRKYVEQDDLPHLMFAGPAGVGKTASAGAIARELYGE-DWREHFLELNASDERGIDVVR 97
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA + + Y++I LDEADA+T+DAQ+ALRR +E+F+ N RF + CNY S+I
Sbjct: 98 DRIKNFARS-SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSHNTRFILSCNYSSQII 156
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTD 469
IQSRC FRF L I + + +EI +G++LTD
Sbjct: 157 DPIQSRCAVFRFTELSDEAIEA-----------------QTREIAETEGISLTD 193
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 103/187 (55%), Gaps = 28/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF L I ++ + E E +++T DG
Sbjct: 136 MEQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEAQTREIAETEGISLTDDG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-VSRVEKYR------------ 107
A++ + GDMRK +N LQ+AA +EV+E+ +F + +R E+
Sbjct: 196 VDALVYAAAGDMRKAINGLQAAAVM-GEEVDEEAVFAITSTARPEEVERMVDQAIGGDFT 254
Query: 108 --PSTLDELVSHQ-----DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+TL++L++ + D+I + ++ E V L+ ++ +++YR+ G +E++
Sbjct: 255 AARATLEDLLTDRGLAGGDVIDQLHRSAWEFDLGEHETVRLLERLGEVDYRITEGANERL 314
Query: 154 QLSALIA 160
QL A++A
Sbjct: 315 QLEAMLA 321
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 107/234 (45%), Gaps = 68/234 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE--KIQLSALIA 160
+EKYRP +LD++ H++I+ + ++ D+ + + AG + K + IA
Sbjct: 19 IEKYRPESLDDVKGHENIVPRLR--------KYVEQDDLPHLMFAGPAGVGKTASAGAIA 70
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D E LELNASD+RGI +VRD+I FA + + Y++I LDEADA+T+DAQ
Sbjct: 71 RELYGEDWREHFLELNASDERGIDVVRDRIKNFARS-SFGGVEYRIIFLDEADALTSDAQ 129
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 130 SALRRTMEQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEAQTREIAETEGI 189
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY--NSVGYPTKTE 278
+T DG A++ + GDMRK +N LQ+AA +EV+E+ V+ S P + E
Sbjct: 190 SLTDDGVDALVYAAAGDMRKAINGLQAAAVM-GEEVDEEAVFAITSTARPEEVE 242
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 39/62 (62%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ ++GLA D++ ++ ++ E V L+ ++ +++YR+ G +E++QL A+
Sbjct: 260 LEDLLTDRGLAGGDVIDQLHRSAWEFDLGEHETVRLLERLGEVDYRITEGANERLQLEAM 319
Query: 516 IA 517
+A
Sbjct: 320 LA 321
>gi|308487512|ref|XP_003105951.1| CRE-RFC-4 protein [Caenorhabditis remanei]
gi|308254525|gb|EFO98477.1| CRE-RFC-4 protein [Caenorhabditis remanei]
Length = 362
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 99/154 (64%), Gaps = 19/154 (12%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA-- 362
+LPHLLFYGPPGTGKT+T LA R+L+ + F VL+LNASD+RGI +VR ++ +F
Sbjct: 47 DLPHLLFYGPPGTGKTSTALAFCRQLFPRNIFQDRVLDLNASDERGISVVRQKVSRFIVL 106
Query: 363 -STKTMHKSSY----------------KLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
S ++ S+ K+IILDE DAMT +AQ A+RR+IE F+ RF
Sbjct: 107 LSNHSLQIQSFSKTTLSTNCKEDVLKLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFI 166
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+ICNY+S++ P + SRC +FRF L S + + RL
Sbjct: 167 LICNYVSRLIPPVVSRCAKFRFKSLPSEVQVQRL 200
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE F+ RF +ICNY+S++ P + SRC +FRF L S + + RL + + E+ ++ D
Sbjct: 156 IEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPSEVQVQRLRTICDAEETPMSNDE 215
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+++ S+GD+R+ + LQS A
Sbjct: 216 LMQVMEYSEGDLRRAVCTLQSLA 238
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 35/163 (21%)
Query: 87 ADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLA 146
A+++ D + +++ EKYRP TLD+ ++HQD + T ++ L+ D+ + L
Sbjct: 2 AEQIQVDNKKSKVLTWTEKYRPKTLDD-IAHQDEVVT-------MLKGALQGKDLPHLLF 53
Query: 147 AG------TSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFA---STKT 197
G TS + + N +D+ VL+LNASD+RGI +VR ++ +F S +
Sbjct: 54 YGPPGTGKTSTALAFCRQLFPRNIFQDR--VLDLNASDERGISVVRQKVSRFIVLLSNHS 111
Query: 198 MHKSSY----------------KLIILDEADAMTNDAQNALRR 224
+ S+ K+IILDE DAMT +AQ A+RR
Sbjct: 112 LQIQSFSKTTLSTNCKEDVLKLKIIILDEVDAMTREAQAAMRR 154
>gi|339257864|ref|XP_003369118.1| replication factor C subunit 4 [Trichinella spiralis]
gi|316966678|gb|EFV51223.1| replication factor C subunit 4 [Trichinella spiralis]
Length = 357
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 110/181 (60%), Gaps = 19/181 (10%)
Query: 278 EITNILRWLL--NESMDLCYKINRFI----------DENELPHLLFYGPPGTGKTTTILA 325
E+ +L+ L N+ + LC I F+ D +P+LLFYGPPGTGKT+ ILA
Sbjct: 26 EVVAVLKKSLTSNDKLRLCLMILYFVEHLIRFANILDNYFIPNLLFYGPPGTGKTSAILA 85
Query: 326 CARKLYTKAQFNAMVLELNASDDRGIGIVRDQI---FQFASTKTMHKSS----YKLIILD 378
R+++ + VLELNASD+RGI ++RD++ QFA+++ K++ILD
Sbjct: 86 LCRQIFGSEIYRDRVLELNASDERGIDVIRDKVKLFSQFAASEITEGGKKCPPLKMVILD 145
Query: 379 EADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSR 438
EAD+MT AQ ALRR +E+ + RFC+ICNY+S I I SRC +FRF PL + + R
Sbjct: 146 EADSMTKQAQAALRRTMERESKTTRFCLICNYISCIIEPITSRCAKFRFKPLTLEIQIER 205
Query: 439 L 439
L
Sbjct: 206 L 206
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 52/84 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+ + RFC+ICNY+S I I SRC +FRF PL + + RL + E E V++
Sbjct: 162 MERESKTTRFCLICNYISCIIEPITSRCAKFRFKPLTLEIQIERLRKICENESVSIDDAA 221
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT 84
++I DGD+R+ +N LQSAA+
Sbjct: 222 LSSLISFCDGDLRRAINTLQSAAS 245
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 67/151 (44%), Gaps = 62/151 (41%)
Query: 166 RDKLEVLELNASDDRGIGIVRDQI---FQFASTKTMHKSS----YKLIILDEADAMTNDA 218
RD+ VLELNASD+RGI ++RD++ QFA+++ K++ILDEAD+MT A
Sbjct: 97 RDR--VLELNASDERGIDVIRDKVKLFSQFAASEITEGGKKCPPLKMVILDEADSMTKQA 154
Query: 219 QNALRRKL---------------------PVTPDGKK----------------------- 234
Q ALRR + P+T K
Sbjct: 155 QAALRRTMERESKTTRFCLICNYISCIIEPITSRCAKFRFKPLTLEIQIERLRKICENES 214
Query: 235 ---------AIIDLSDGDMRKVLNILQSAAT 256
++I DGD+R+ +N LQSAA+
Sbjct: 215 VSIDDAALSSLISFCDGDLRRAINTLQSAAS 245
>gi|448346878|ref|ZP_21535757.1| replication factor C small subunit [Natrinema altunense JCM 12890]
gi|445631215|gb|ELY84447.1| replication factor C small subunit [Natrinema altunense JCM 12890]
Length = 330
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 105/167 (62%), Gaps = 17/167 (10%)
Query: 274 PTKTEITNILRWL----------LNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P KTE+ W+ + D+ ++ ++++++LPHLLF GP GTGKTT
Sbjct: 13 PGKTEV-----WIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGTGKTTAA 67
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
+ AR++Y + LELNASD RGI +VRD+I FA + + S+++I LDEADA+
Sbjct: 68 KSIAREVYDD-DWQENFLELNASDQRGIDVVRDRIKDFARS-SFGGYSHRIIFLDEADAL 125
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
T+DAQ+ALRR +E+F+ N RF + CNY S+I IQSRC FRF L
Sbjct: 126 TSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTEL 172
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 100/193 (51%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF L I +++ + E + VT DG
Sbjct: 137 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTVDAIEAQVREIAATEDIAVTDDG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ-- 118
A++ +DGDMRK +N LQ+AA + V+E+T+F + + RP ++ +V H
Sbjct: 197 VDALVYAADGDMRKAINALQAAAV-MGETVDEETVFAITAT----ARPEEVEAMVEHAID 251
Query: 119 ----------------------DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
D+I + ++PE V L+ ++ +++YR+ G
Sbjct: 252 GDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEGA 311
Query: 150 SEKIQLSALIAAF 162
+E++QL A++A+
Sbjct: 312 NERLQLEAMLASL 324
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 103/222 (46%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP LD++ H DI+ ++ ++ D+ + L AG + + +A +
Sbjct: 20 IEKYRPERLDDIKGHTDIVPRLKN--------YVEQDDLPHLLFAGPAGTGKTTAAKSIA 71
Query: 163 NSARD---KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D + LELNASD RGI +VRD+I FA + + S+++I LDEADA+T+DAQ
Sbjct: 72 REVYDDDWQENFLELNASDQRGIDVVRDRIKDFARS-SFGGYSHRIIFLDEADALTSDAQ 130
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 131 SALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTVDAIEAQVREIAATEDI 190
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
VT DG A++ +DGDMRK +N LQ+AA + V+E+TV+
Sbjct: 191 AVTDDGVDALVYAADGDMRKAINALQAAAV-MGETVDEETVF 231
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 41/64 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ E+GLA D++ ++ ++PE V L+ ++ +++YR+ G +E++QL A+
Sbjct: 261 LEDLLTERGLAGGDVIDQLHRSAWEFDVPERATVRLLERLGEVDYRITEGANERLQLEAM 320
Query: 516 IAAF 519
+A+
Sbjct: 321 LASL 324
>gi|448364052|ref|ZP_21552646.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
gi|445644940|gb|ELY97947.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
Length = 331
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 98/144 (68%), Gaps = 2/144 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ R++++++LPHL+F GP GTGKTT A AR++Y + LELNASD RGI +VR
Sbjct: 42 RLERYVEQDDLPHLMFAGPAGTGKTTAAQAIAREVYGD-DWRENFLELNASDQRGIDVVR 100
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA + +++I LDEADA+T+DAQ+ALRR +E+F+ N RF + CNY S+I
Sbjct: 101 DRIKDFARA-SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQII 159
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC FRF L I +++
Sbjct: 160 DPIQSRCAVFRFTELTEDAIEAQV 183
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 104/193 (53%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF L I +++ + E E + VT DG
Sbjct: 139 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIAETEGIEVTDDG 198
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
A++ +DGDMRK +N LQ+AA + V+E+T+F + + RP ++E+V H
Sbjct: 199 VDALVYAADGDMRKAINALQAAAV-MGETVDEETVFAITAT----ARPEEVEEMVDHAIA 253
Query: 118 ----------QDIIS------------------TIEIPESMLVDLVLKMSDIEYRLAAGT 149
+D+++ T +IPE V L+ ++ ++++R+ G
Sbjct: 254 GDFTAARAALEDLLTDRGLAGGDVIDQLHRSAWTFDIPEQATVRLLERLGEVDFRITEGA 313
Query: 150 SEKIQLSALIAAF 162
+E++QL A++A+
Sbjct: 314 NERLQLEAMLASL 326
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 100/221 (45%), Gaps = 64/221 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP LDE+ H++I+ +E + + L L+ + AGT + A+
Sbjct: 22 IEKYRPERLDEIKGHENIVPRLERYVEQDDLPHLM-------FAGPAGTGKTTAAQAIAR 74
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELNASD RGI +VRD+I FA + +++I LDEADA+T+DAQ+
Sbjct: 75 EVYGDDWRENFLELNASDQRGIDVVRDRIKDFARA-SFGGYDHRIIFLDEADALTSDAQS 133
Query: 221 ALRRKL-----------------------------------------------------P 227
ALRR +
Sbjct: 134 ALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIAETEGIE 193
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
VT DG A++ +DGDMRK +N LQ+AA + V+E+TV+
Sbjct: 194 VTDDGVDALVYAADGDMRKAINALQAAAV-MGETVDEETVF 233
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 41/64 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ ++GLA D++ ++ +IPE V L+ ++ ++++R+ G +E++QL A+
Sbjct: 263 LEDLLTDRGLAGGDVIDQLHRSAWTFDIPEQATVRLLERLGEVDFRITEGANERLQLEAM 322
Query: 516 IAAF 519
+A+
Sbjct: 323 LASL 326
>gi|448304145|ref|ZP_21494089.1| replication factor C small subunit [Natronorubrum sulfidifaciens
JCM 14089]
gi|445591898|gb|ELY46094.1| replication factor C small subunit [Natronorubrum sulfidifaciens
JCM 14089]
Length = 329
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 99/144 (68%), Gaps = 2/144 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ R+I++++LPHL+F GP GTGKTT + AR++Y + LELNASD RGI +VR
Sbjct: 40 RLQRYIEQDDLPHLMFAGPAGTGKTTAAQSIAREVYDD-DWRENFLELNASDQRGIDVVR 98
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA + + +++I LDEADA+T+DAQ+ALRR +E+F+ N RF + CNY S+I
Sbjct: 99 DRIKDFARS-SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQII 157
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC FRF L I +++
Sbjct: 158 DPIQSRCAVFRFTELSEDAIEAQI 181
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 101/193 (52%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF L I +++ + E E + VT DG
Sbjct: 137 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELSEDAIEAQIREIAEIEGITVTDDG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ-- 118
A++ +DGDMRK +N LQ+AA + V+E+T+F + + RP ++ +V H
Sbjct: 197 IDALVYAADGDMRKAINALQAAAVM-GETVDEETVFAITST----ARPEEVEAMVDHAID 251
Query: 119 ----------------------DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
D+I + +IPE V L+ ++ +++YR+ G
Sbjct: 252 GDFTAARAALEDLLMERGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLGEVDYRITEGA 311
Query: 150 SEKIQLSALIAAF 162
+E++QL A++A+
Sbjct: 312 NERLQLEAMLASL 324
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 107/234 (45%), Gaps = 68/234 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP LDE+ H++I+ ++ ++ D+ + + AG + + +A +
Sbjct: 20 IEKYRPERLDEIKGHENIVPRLQ--------RYIEQDDLPHLMFAGPAGTGKTTAAQSIA 71
Query: 163 NSARD---KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D + LELNASD RGI +VRD+I FA + + +++I LDEADA+T+DAQ
Sbjct: 72 REVYDDDWRENFLELNASDQRGIDVVRDRIKDFARS-SFGGYDHRIIFLDEADALTSDAQ 130
Query: 220 NALRRKLP---------------------------------------------------- 227
+ALRR +
Sbjct: 131 SALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELSEDAIEAQIREIAEIEGI 190
Query: 228 -VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY--NSVGYPTKTE 278
VT DG A++ +DGDMRK +N LQ+AA + V+E+TV+ S P + E
Sbjct: 191 TVTDDGIDALVYAADGDMRKAINALQAAAV-MGETVDEETVFAITSTARPEEVE 243
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 42/64 (65%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ +E+GLA D++ ++ +IPE V L+ ++ +++YR+ G +E++QL A+
Sbjct: 261 LEDLLMERGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLGEVDYRITEGANERLQLEAM 320
Query: 516 IAAF 519
+A+
Sbjct: 321 LASL 324
>gi|383319632|ref|YP_005380473.1| replication factor C small subunit [Methanocella conradii HZ254]
gi|379321002|gb|AFC99954.1| replication factor C small subunit [Methanocella conradii HZ254]
Length = 322
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 97/148 (65%), Gaps = 4/148 (2%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++ LPHLLF GPPG GKT +A A+ ++ A N + ELNASD+RGI +VR
Sbjct: 28 RLKSYVKSGNLPHLLFSGPPGVGKTACAVALAKDMFGDAWQNNFI-ELNASDERGIEVVR 86
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+ I FA T + ++ +K+I LDEADA+T DAQ+ALRR +E++T RF I CNY SKI
Sbjct: 87 NNIKNFARTSPLGEARFKVIFLDEADALTADAQSALRRTMERYTATCRFIISCNYSSKII 146
Query: 416 PAIQSRCTRFRF---GPLDSSLIMSRLD 440
IQSRC +RF GP D ++ R++
Sbjct: 147 EPIQSRCAIYRFGLLGPKDVETMVRRIE 174
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 104/189 (55%), Gaps = 28/189 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E++T RF I CNY SKI IQSRC +RFG L + + + + + E + V+PDG
Sbjct: 126 MERYTATCRFIISCNYSSKIIEPIQSRCAIYRFGLLGPKDVETMVRRIEKGEHIKVSPDG 185
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF-TLLVSRVEKYRP----------- 108
+A+I ++ GDMR+ +N LQSA+T V D +F T+ ++R ++
Sbjct: 186 LEALIYVARGDMRRAINALQSASTV-TKHVTADVVFETMSIARPKEIEDMLKLALNGQFM 244
Query: 109 ---STLDEL-----VSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ LD+L +S D++ I + E +LVDLV ++ + ++RL G +E+I
Sbjct: 245 DARNKLDDLLIKYGLSGNDVVDQIYSAMFALGLDEGVLVDLVDRIGEADFRLTEGANERI 304
Query: 154 QLSALIAAF 162
Q+ AL+A F
Sbjct: 305 QVEALLAHF 313
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 123/273 (45%), Gaps = 78/273 (28%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA--- 160
EKYRP TLD+++ + I+ ++ +K ++ + L +G + + +A
Sbjct: 9 EKYRPKTLDDVIGQEQIVRRLKS--------YVKSGNLPHLLFSGPPGVGKTACAVALAK 60
Query: 161 -AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
F A +ELNASD+RGI +VR+ I FA T + ++ +K+I LDEADA+T DAQ
Sbjct: 61 DMFGDAWQN-NFIELNASDERGIEVVRNNIKNFARTSPLGEARFKVIFLDEADALTADAQ 119
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 120 SALRRTMERYTATCRFIISCNYSSKIIEPIQSRCAIYRFGLLGPKDVETMVRRIEKGEHI 179
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
V+PDG +A+I ++ GDMR+ +N LQSA+T V D V+ ++ EI ++L+
Sbjct: 180 KVSPDGLEALIYVARGDMRRAINALQSASTV-TKHVTADVVFETMSIARPKEIEDMLKLA 238
Query: 287 LNESMDLCYKINRFID-ENELPHLLF-YGPPGT 317
LN +F+D N+L LL YG G
Sbjct: 239 LN---------GQFMDARNKLDDLLIKYGLSGN 262
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 43/65 (66%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
K+ ++ I+ GL+ D++ +I + L + E +LVDLV ++ + ++RL G +E+IQ+ A
Sbjct: 249 KLDDLLIKYGLSGNDVVDQIYSAMFALGLDEGVLVDLVDRIGEADFRLTEGANERIQVEA 308
Query: 515 LIAAF 519
L+A F
Sbjct: 309 LLAHF 313
>gi|374628354|ref|ZP_09700739.1| replication factor C small subunit [Methanoplanus limicola DSM
2279]
gi|373906467|gb|EHQ34571.1| replication factor C small subunit [Methanoplanus limicola DSM
2279]
Length = 325
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++ LPHLLF G G GKTT+ +A A++ Y + +N E+NASD+RGI
Sbjct: 25 EIVSRLKSYVKTKSLPHLLFTGTAGIGKTTSAVALAKEFYGE-HWNVNFREMNASDERGI 83
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI QFA T + + +K++ LDEADA+TNDAQ ALRR +E + RF + CNY
Sbjct: 84 DVVRNQIKQFARTAPIGGAEFKILFLDEADALTNDAQAALRRTMENYARTCRFILSCNYS 143
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI IQSRC +RF PLD I L
Sbjct: 144 SKIIDPIQSRCAIYRFRPLDREAITEEL 171
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 98/221 (44%), Gaps = 63/221 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP LD++V ++I+S ++ + L L+ + AG + AL
Sbjct: 9 IEKYRPKRLDDVVGQKEIVSRLKSYVKTKSLPHLLFTGT-------AGIGKTTSAVALAK 61
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
F + E+NASD+RGI +VR+QI QFA T + + +K++ LDEADA+TNDAQ
Sbjct: 62 EFYGEHWNVNFREMNASDERGIDVVRNQIKQFARTAPIGGAEFKILFLDEADALTNDAQA 121
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR L
Sbjct: 122 ALRRTMENYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAITEELMHIAENEGLT 181
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
++ D AII +S GDMRK +N LQ AA E+ E+ ++
Sbjct: 182 LSEDAISAIIYVSAGDMRKAINALQGAAIIDP-EIKEEMIF 221
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 29/188 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF + CNY SKI IQSRC +RF PLD I L ++ E E + ++ D
Sbjct: 127 MENYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAITEELMHIAENEGLTLSEDA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL--------------------- 99
AII +S GDMRK +N LQ AA E+ E+ IF +
Sbjct: 187 ISAIIYVSAGDMRKAINALQGAAIIDP-EIKEEMIFEITSTAKPDEILELLEIIIEADFD 245
Query: 100 -----VSRVEKYRPSTLDELVS--HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+ + R +EL++ ++ I+S I + ++++ + + ++R++ G+
Sbjct: 246 GAGHKLDELTVKRGIAPNELINQLYRTIVSHKTIGRELKLEMISHLGETDFRISEGSDPG 305
Query: 153 IQLSALIA 160
IQ+ ALIA
Sbjct: 306 IQMEALIA 313
>gi|110590957|pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
gi|110590958|pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
gi|110590959|pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
gi|110590960|pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 97/144 (67%), Gaps = 1/144 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ +++ +PHLLF GPPGTGKT T +A AR L+ + + +E+NASD+RGI +VR
Sbjct: 28 RLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERGIDVVR 86
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+I +FA T + + +K+I LDEADA+T DAQ ALRR +E ++ + RF + CNY+S+I
Sbjct: 87 HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRII 146
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC FRF P+ + RL
Sbjct: 147 EPIQSRCAVFRFKPVPKEAMKKRL 170
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 104/226 (46%), Gaps = 71/226 (31%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TLDE+V ++I ++ ++ +I + L +G + + IA
Sbjct: 8 VEKYRPRTLDEVVGQDEVIQRLK--------GYVERKNIPHLLFSGPPGTGKTATAIAL- 58
Query: 163 NSARD------KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
ARD + +E+NASD+RGI +VR +I +FA T + + +K+I LDEADA+T
Sbjct: 59 --ARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA 116
Query: 217 DAQNALRRKL---------------------------------PV--------------- 228
DAQ ALRR + PV
Sbjct: 117 DAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK 176
Query: 229 -----TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYN 269
T DG +A+I +S GD RK +N LQ AA A + V+ DT+Y
Sbjct: 177 EGVKITEDGLEALIYISGGDFRKAINALQGAA-AIGEVVDADTIYQ 221
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ + RF + CNY+S+I IQSRC FRF P+ + RL + E+E V +T DG
Sbjct: 126 MEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDG 185
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVS 101
+A+I +S GD RK +N LQ AA A + V+ DTI+ + +
Sbjct: 186 LEALIYISGGDFRKAINALQGAA-AIGEVVDADTIYQITAT 225
>gi|76801102|ref|YP_326110.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
gi|83288436|sp|Q3ITJ2.1|RFCS_NATPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|76556967|emb|CAI48541.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 95/140 (67%), Gaps = 2/140 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++I +N+LPHLLF GP G GKTT A A+++Y + LELNASD RGI +VR
Sbjct: 35 RLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGD-DWRENFLELNASDQRGIDVVR 93
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA + +++I LDEADA+T+DAQ+ALRR +E+F+ N RF + CNY S+I
Sbjct: 94 DRIKSFARA-SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSDNTRFILSCNYSSQII 152
Query: 416 PAIQSRCTRFRFGPLDSSLI 435
IQSRC FRF PL + +
Sbjct: 153 DPIQSRCAVFRFSPLGDAAV 172
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 81/144 (56%), Gaps = 8/144 (5%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF PL + + ++ + + E + +T DG
Sbjct: 132 MEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGIELTDDG 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
A++ +DGDMRK +N LQ+AA V+E+ ++T+ + RP + E+V+
Sbjct: 192 VDALVYAADGDMRKAINGLQAAAVMGG-TVDEEAVYTITST----ARPEEIREMVTEAMD 246
Query: 118 QDIISTIEIPESMLVDLVLKMSDI 141
D + E++L D+ + DI
Sbjct: 247 GDFTAARSQLETLLTDVGIAGGDI 270
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 112/253 (44%), Gaps = 70/253 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE--KIQLSALIA 160
+EKYRP TLD++V H+ I ++ + +D+ + L AG + K + IA
Sbjct: 15 IEKYRPQTLDDIVGHESITERLK--------QYIAQNDLPHLLFAGPAGVGKTTAATAIA 66
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D E LELNASD RGI +VRD+I FA + +++I LDEADA+T+DAQ
Sbjct: 67 KEVYGDDWRENFLELNASDQRGIDVVRDRIKSFARA-SFGGYDHRIIFLDEADALTSDAQ 125
Query: 220 NALRRKL---------------------PV------------------------------ 228
+ALRR + P+
Sbjct: 126 SALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGI 185
Query: 229 --TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
T DG A++ +DGDMRK +N LQ+AA V+E+ VY EI R +
Sbjct: 186 ELTDDGVDALVYAADGDMRKAINGLQAAAVMGG-TVDEEAVYTITSTARPEEI----REM 240
Query: 287 LNESMDLCYKINR 299
+ E+MD + R
Sbjct: 241 VTEAMDGDFTAAR 253
>gi|195481163|ref|XP_002101540.1| GE15569 [Drosophila yakuba]
gi|194189064|gb|EDX02648.1| GE15569 [Drosophila yakuba]
Length = 353
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 137/225 (60%), Gaps = 31/225 (13%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP++L YGPPGTGKT+TILA +R+++ F +LELNASD+RGI +VR
Sbjct: 54 LRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGD-MFKDRILELNASDERGINVVRT 112
Query: 357 QIFQFA-----STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+I F+ S + K +K+IILDEAD+MT+ AQ+ALRR +EK + + RFC+ICN
Sbjct: 113 KIKNFSQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICN 172
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQE------IKIEK 463
Y+S+I I SRC++FRF L ++ RL Y + +KI+E +KI
Sbjct: 173 YVSRIIVPITSRCSKFRFKALGDDKVIDRLKY------ICAMEGVKIEEDAYKSIVKISG 226
Query: 464 GLALTDILTEISLL--VHRLEIPESML--VDLVLKMSDI--EYRL 502
G D+ I+ L +RL+ PE ++ DL +MS + EY L
Sbjct: 227 G----DLRRAITTLQSCYRLKGPEHIINTADL-FEMSGVIPEYYL 266
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + + RFC+ICNY+S+I I SRC++FRF L ++ RL Y+ E V + D
Sbjct: 158 MEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGDDKVIDRLKYICAMEGVKIEEDA 217
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE--VNEDTIFTL 98
K+I+ +S GD+R+ + LQS E +N +F +
Sbjct: 218 YKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTADLFEM 257
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 18/134 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP +D++V ++++ + ++ D+ L G + S ++AA
Sbjct: 33 VEKYRPRNVDDVVEQSEVVAVLR--------KCVEGGDLPNMLLYGPPGTGKTSTILAAS 84
Query: 163 NSARDKL---EVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLIILDEAD 212
+ +LELNASD+RGI +VR +I F+ S + K +K+IILDEAD
Sbjct: 85 RQIFGDMFKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEAD 144
Query: 213 AMTNDAQNALRRKL 226
+MT+ AQ+ALRR +
Sbjct: 145 SMTHAAQSALRRTM 158
>gi|288931716|ref|YP_003435776.1| Replication factor C [Ferroglobus placidus DSM 10642]
gi|288893964|gb|ADC65501.1| Replication factor C [Ferroglobus placidus DSM 10642]
Length = 321
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++ + +PHLLF GPPGTGKT T +A AR L+ + + +E+NASD+RGI
Sbjct: 23 EIIQRLKSYVKQKNIPHLLFAGPPGTGKTATAIALARDLFGEV-WRENFIEMNASDERGI 81
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR +I +FA T + + +K+I LDEADA+T DAQ ALRR +E ++ RF + CNY+
Sbjct: 82 DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKVCRFILSCNYV 141
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
S+I IQSRC F+F P+ + RL
Sbjct: 142 SRIIEPIQSRCAVFKFKPVPKEAMKKRL 169
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 75/130 (57%), Gaps = 17/130 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TLDE+V +II ++ +K +I + L AG + + IA
Sbjct: 7 VEKYRPKTLDEVVGQDEIIQRLKS--------YVKQKNIPHLLFAGPPGTGKTATAIAL- 57
Query: 163 NSARD------KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
ARD + +E+NASD+RGI +VR +I +FA T + + +K+I LDEADA+T
Sbjct: 58 --ARDLFGEVWRENFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA 115
Query: 217 DAQNALRRKL 226
DAQ ALRR +
Sbjct: 116 DAQAALRRTM 125
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 36/195 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CNY+S+I IQSRC F+F P+ + RL + E E + + +
Sbjct: 125 MEMYSKVCRFILSCNYVSRIIEPIQSRCAVFKFKPVPKEAMKKRLKEIAENEGLEIDDEA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
+ +I +S GD RK +N LQ AA A + + ++ + + RP L +++
Sbjct: 185 LEVLIYISGGDFRKAINALQGAA-ALDKRITPEILYQITAT----ARPEELRKIIDTALK 239
Query: 116 -------------------SHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
S +D++S + + E + V L+ K+ +I++RL G
Sbjct: 240 GNYLQAKDMLENLMAEYGMSGEDVVSQLFREIMYSNLDEKLKVVLIDKLGEIDFRLTEGA 299
Query: 150 SEKIQLSALIAAFNS 164
SE IQL+A +A ++
Sbjct: 300 SELIQLNAYLAFLST 314
>gi|448388975|ref|ZP_21565470.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
gi|445669262|gb|ELZ21874.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
Length = 330
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 98/144 (68%), Gaps = 2/144 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ R+++ ++LPHL+F GP GTGKTT A AR++Y + LELNASD RGI +VR
Sbjct: 40 RLQRYVERDDLPHLMFAGPAGTGKTTAAQAIAREVYDD-DWRENFLELNASDQRGIDVVR 98
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA + + +++I LDEADA+T+DAQ+ALRR +E+F+ N RF + CNY S+I
Sbjct: 99 DRIKDFARS-SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQII 157
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC FRF L I +++
Sbjct: 158 DPIQSRCAVFRFTELTEDAIEAQV 181
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 102/193 (52%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF L I +++ + E E + VT DG
Sbjct: 137 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIAENEGIEVTDDG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ-- 118
A++ +DGDMRK +N LQ+AA + V+E+T+F + + RP ++E+V H
Sbjct: 197 VDALVYAADGDMRKAINGLQAAAVM-GETVDEETVFAITAT----ARPEEVEEMVEHAID 251
Query: 119 ----------------------DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
D+I + +IPE V L+ ++ +++YR+ G
Sbjct: 252 GDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEFDIPELATVRLLERLGEVDYRITEGA 311
Query: 150 SEKIQLSALIAAF 162
+E++QL A++A+
Sbjct: 312 NERLQLEAMLASL 324
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 103/222 (46%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP LDE+ H++I+ ++ ++ D+ + + AG + + +A A
Sbjct: 20 IEKYRPERLDEIKGHENIVPRLQ--------RYVERDDLPHLMFAGPAGTGKTTAAQAIA 71
Query: 163 NSARD---KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D + LELNASD RGI +VRD+I FA + + +++I LDEADA+T+DAQ
Sbjct: 72 REVYDDDWRENFLELNASDQRGIDVVRDRIKDFARS-SFGGYDHRIIFLDEADALTSDAQ 130
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 131 SALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIAENEGI 190
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
VT DG A++ +DGDMRK +N LQ+AA + V+E+TV+
Sbjct: 191 EVTDDGVDALVYAADGDMRKAINGLQAAAV-MGETVDEETVF 231
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 41/64 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ E+GLA D++ ++ +IPE V L+ ++ +++YR+ G +E++QL A+
Sbjct: 261 LEDLLTERGLAGGDVIDQLHRSAWEFDIPELATVRLLERLGEVDYRITEGANERLQLEAM 320
Query: 516 IAAF 519
+A+
Sbjct: 321 LASL 324
>gi|336252796|ref|YP_004595903.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
gi|335336785|gb|AEH36024.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
Length = 336
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 111/176 (63%), Gaps = 17/176 (9%)
Query: 274 PTKTEITNILRWL-------LNE---SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P KTE+ W+ L+E D+ ++ ++++++LPHL+F GP GTGKTT
Sbjct: 19 PGKTEV-----WIEKYRPERLDEIKGHEDIIPRLKNYVEQDDLPHLMFAGPAGTGKTTAA 73
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
A AR++Y + LELNASD RGI +VRD+I FA + + +++I LDEADA+
Sbjct: 74 QAIAREIYDD-DWRENFLELNASDQRGIDVVRDRIKDFARS-SFGGYDHRIIFLDEADAL 131
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
T+DAQ+ALRR +E+F+ N RF + CNY S+I IQSRC FRF L + I +++
Sbjct: 132 TSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDNAIEAQV 187
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 102/193 (52%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF L + I +++ + + + VT DG
Sbjct: 143 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDNAIEAQVREIAADQDIEVTDDG 202
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ-- 118
A++ +DGDMRK +N LQ+AA + V+E+T+F + + RP ++E+V H
Sbjct: 203 VDALVYAADGDMRKAINALQAAAVM-GETVDEETVFAITAT----ARPEEVEEMVGHAID 257
Query: 119 ----------------------DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
D+I + +IPE V L+ ++ +++YR+ G
Sbjct: 258 GDFTAARAALEDLLTDRGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLGEVDYRITEGA 317
Query: 150 SEKIQLSALIAAF 162
+E++QL A++A+
Sbjct: 318 NERLQLEAMLASL 330
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 103/222 (46%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP LDE+ H+DII ++ ++ D+ + + AG + + +A A
Sbjct: 26 IEKYRPERLDEIKGHEDIIPRLKN--------YVEQDDLPHLMFAGPAGTGKTTAAQAIA 77
Query: 163 NSARD---KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D + LELNASD RGI +VRD+I FA + + +++I LDEADA+T+DAQ
Sbjct: 78 REIYDDDWRENFLELNASDQRGIDVVRDRIKDFARS-SFGGYDHRIIFLDEADALTSDAQ 136
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 137 SALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDNAIEAQVREIAADQDI 196
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
VT DG A++ +DGDMRK +N LQ+AA + V+E+TV+
Sbjct: 197 EVTDDGVDALVYAADGDMRKAINALQAAAVM-GETVDEETVF 237
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 41/64 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ ++GLA D++ ++ +IPE V L+ ++ +++YR+ G +E++QL A+
Sbjct: 267 LEDLLTDRGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLGEVDYRITEGANERLQLEAM 326
Query: 516 IAAF 519
+A+
Sbjct: 327 LASL 330
>gi|428673231|gb|EKX74144.1| replication factor C subunit 2, putative [Babesia equi]
Length = 228
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 99/155 (63%), Gaps = 10/155 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + I+ +PH++F+GPPGTGKT+ LA AR++Y VLELNASD+RGI +VRD
Sbjct: 31 MEQIIETFNMPHMIFHGPPGTGKTSAALAMARQIYGAEGMRERVLELNASDERGIDVVRD 90
Query: 357 QIFQFASTKTMHKS----------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
+I + + +YK+IILDEAD +T+DAQ ALRR+IE ++ RF +
Sbjct: 91 RIKTYTRINISNNKINPETKRVMPNYKMIILDEADMITSDAQAALRRVIENYSNISRFIL 150
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ICNYL KI I SRC+ F F P++ + + RL+Y
Sbjct: 151 ICNYLHKIIGPIYSRCSAFHFKPIEQNSQVDRLEY 185
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RF +ICNYL KI I SRC+ F F P++ + + RL+Y+ +QE + T
Sbjct: 139 IENYSNISRFILICNYLHKIIGPIYSRCSAFHFKPIEQNSQVDRLEYICKQEGIAYTTSA 198
Query: 61 KKAIIDLSDGDMRKVLNILQ 80
+ + +S GDMRK + ILQ
Sbjct: 199 LQFLTKISQGDMRKSITILQ 218
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 16/133 (12%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP L ++V +S +E +++ M + + GT + A+
Sbjct: 10 VEKYRPKKLSDVVFQTQAVSIME----QIIE-TFNMPHMIFHGPPGTGKTSAALAMARQI 64
Query: 163 NSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKS----------SYKLIILDEA 211
A E VLELNASD+RGI +VRD+I + + +YK+IILDEA
Sbjct: 65 YGAEGMRERVLELNASDERGIDVVRDRIKTYTRINISNNKINPETKRVMPNYKMIILDEA 124
Query: 212 DAMTNDAQNALRR 224
D +T+DAQ ALRR
Sbjct: 125 DMITSDAQAALRR 137
>gi|18859927|ref|NP_573245.1| CG8142 [Drosophila melanogaster]
gi|17862532|gb|AAL39743.1| LD35209p [Drosophila melanogaster]
gi|22832754|gb|AAF48768.2| CG8142 [Drosophila melanogaster]
Length = 353
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 105/152 (69%), Gaps = 8/152 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP++L YGPPGTGKT+TILA +R+++ F +LELNASD+RGI +VR
Sbjct: 54 LRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGD-MFKDRILELNASDERGINVVRT 112
Query: 357 QIFQFA-----STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+I F+ S + K +K+IILDEAD+MT+ AQ+ALRR +EK + + RFC+ICN
Sbjct: 113 KIKNFSQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICN 172
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
Y+S+I I SRC++FRF L ++ RL Y
Sbjct: 173 YVSRIIVPITSRCSKFRFKALGEDKVIDRLKY 204
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + + RFC+ICNY+S+I I SRC++FRF L ++ RL Y+ E E V + D
Sbjct: 158 MEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKYICEMEGVKIEDDA 217
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE--VNEDTIFTL 98
K+I+ +S GD+R+ + LQS E +N +F +
Sbjct: 218 YKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTADLFEM 257
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 18/134 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP +D++V ++++ + ++ D+ L G + S ++AA
Sbjct: 33 VEKYRPRNVDDVVEQSEVVAVLR--------KCVEGGDLPNMLLYGPPGTGKTSTILAAS 84
Query: 163 NSARDKL---EVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLIILDEAD 212
+ +LELNASD+RGI +VR +I F+ S + K +K+IILDEAD
Sbjct: 85 RQIFGDMFKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEAD 144
Query: 213 AMTNDAQNALRRKL 226
+MT+ AQ+ALRR +
Sbjct: 145 SMTHAAQSALRRTM 158
>gi|194892122|ref|XP_001977600.1| GG18160 [Drosophila erecta]
gi|190649249|gb|EDV46527.1| GG18160 [Drosophila erecta]
Length = 353
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 105/152 (69%), Gaps = 8/152 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP++L YGPPGTGKT+TILA +R+++ F +LELNASD+RGI +VR
Sbjct: 54 LRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGD-MFKDRILELNASDERGINVVRT 112
Query: 357 QIFQFA-----STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+I F+ S + K +K+IILDEAD+MT+ AQ+ALRR +EK + + RFC+ICN
Sbjct: 113 KIKNFSQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICN 172
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
Y+S+I I SRC++FRF L ++ RL Y
Sbjct: 173 YVSRIIVPITSRCSKFRFKALGEDKVIDRLKY 204
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + + RFC+ICNY+S+I I SRC++FRF L ++ RL Y+ E V + D
Sbjct: 158 MEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKYICGLEGVKIEEDA 217
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE--VNEDTIFTL 98
K+I+ +S GD+R+ + LQS E +N +F +
Sbjct: 218 YKSIVKISGGDLRRAITTLQSCYRLKGPEHTINTADLFEM 257
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 18/134 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP +D++V ++++ + ++ D+ L G + S ++AA
Sbjct: 33 VEKYRPRNVDDVVEQSEVVAVLR--------KCVEGGDLPNMLLYGPPGTGKTSTILAAS 84
Query: 163 NSARDKL---EVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLIILDEAD 212
+ +LELNASD+RGI +VR +I F+ S + K +K+IILDEAD
Sbjct: 85 RQIFGDMFKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEAD 144
Query: 213 AMTNDAQNALRRKL 226
+MT+ AQ+ALRR +
Sbjct: 145 SMTHAAQSALRRTM 158
>gi|300707470|ref|XP_002995941.1| hypothetical protein NCER_101043 [Nosema ceranae BRL01]
gi|239605186|gb|EEQ82270.1| hypothetical protein NCER_101043 [Nosema ceranae BRL01]
Length = 310
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 92/125 (73%), Gaps = 8/125 (6%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
+P++LFYGPPGTGKTT+I ++ + + N VLELNASD+RGI +VR+ I +FAST
Sbjct: 36 IPNMLFYGPPGTGKTTSI-----RIISNSLPNTSVLELNASDERGISVVRETIKEFAST- 89
Query: 366 TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRF 425
+ ++ KL++LDE D MT DAQNALRRI+E F++ RFC+I NY KI I SRC++F
Sbjct: 90 --YSNTIKLVVLDEVDFMTRDAQNALRRIMEDFSSTTRFCLIANYPKKIITPITSRCSKF 147
Query: 426 RFGPL 430
RF P+
Sbjct: 148 RFNPV 152
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 114/242 (47%), Gaps = 66/242 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE-IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
VEKYRP + DE+ +Q++I ++ I ES ++ +L + GT + + I
Sbjct: 6 VEKYRPKSFDEVEGNQEVIVCLKAIQESRVIPNML------FYGPPGTGK----TTSIRI 55
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+++ VLELNASD+RGI +VR+ I +FAST + ++ KL++LDE D MT DAQNA
Sbjct: 56 ISNSLPNTSVLELNASDERGISVVRETIKEFAST---YSNTIKLVVLDEVDFMTRDAQNA 112
Query: 222 LRRKL---------------------PVTPDG-----------KKAIIDL---------- 239
LRR + P+T +K+++++
Sbjct: 113 LRRIMEDFSSTTRFCLIANYPKKIITPITSRCSKFRFNPVKIFRKSVLEICKKENIEVEY 172
Query: 240 ---------SDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNES 290
S GDMR+V+N +Q+ + +N++TV + E I W L +S
Sbjct: 173 TGIDFLMKTSYGDMRRVVNDIQAIGKSFGI-INQETVLKFNSMLSTEEFKEIFDWFLCKS 231
Query: 291 MD 292
D
Sbjct: 232 YD 233
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 100/193 (51%), Gaps = 28/193 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F++ RFC+I NY KI I SRC++FRF P+ + + + ++E + V G
Sbjct: 117 MEDFSSTTRFCLIANYPKKIITPITSRCSKFRFNPV--KIFRKSVLEICKKENIEVEYTG 174
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI--FTLLVSRVE----------KYRP 108
++ S GDMR+V+N +Q+ + +N++T+ F ++S E K
Sbjct: 175 IDFLMKTSYGDMRRVVNDIQAIGKSFGI-INQETVLKFNSMLSTEEFKEIFDWFLCKSYD 233
Query: 109 STLDELVSHQDIIS----------TIEIPESML---VDLVLKMSDIEYRLAAGTSEKIQL 155
+ L +L S ++ S T + +S L ++++ KMSDIE RL G SEK+QL
Sbjct: 234 ALLRDLESIKETKSLDLANLLLLLTDHVVQSSLENKMEILKKMSDIECRLNLGCSEKLQL 293
Query: 156 SALIAAFNSARDK 168
L++ F R+K
Sbjct: 294 KGLVSIFILLRNK 306
>gi|294464739|gb|ADE77876.1| unknown [Picea sitchensis]
Length = 200
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 118/197 (59%), Gaps = 30/197 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T + RF +ICNY++KI PA+QSRCTRFRF PLD + + RL +VI +E+++VT DG
Sbjct: 1 MEKYTKSTRFALICNYVNKIIPALQSRCTRFRFAPLDPANVTERLRHVISEERLDVTEDG 60
Query: 61 KKAIIDLSDGDMRKVLNILQSA--ATAHADE--------------VNEDTIFTLLVSRVE 104
AI+ LS GDMRK LNILQS A+ H E + + + + L S
Sbjct: 61 LSAIVRLSCGDMRKALNILQSTQMASPHVTEEAVYLCTGNPMPKDIEQISFWLLNESFTN 120
Query: 105 KYRPSTLDELVSHQDI------------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
YR + E+ + + + I I++P ++ V L+ ++DIEYRLA GT+EK
Sbjct: 121 AYR--YISEMKTSKGLALVDVIREIPLFIFNIKMPAAIRVQLINALADIEYRLAFGTNEK 178
Query: 153 IQLSALIAAFNSARDKL 169
+QL +L++AF AR L
Sbjct: 179 LQLGSLVSAFTHARCAL 195
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 4/93 (4%)
Query: 440 DYDDISFF----NIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKM 495
D + ISF+ + Y I E+K KGLAL D++ EI L + +++P ++ V L+ +
Sbjct: 105 DIEQISFWLLNESFTNAYRYISEMKTSKGLALVDVIREIPLFIFNIKMPAAIRVQLINAL 164
Query: 496 SDIEYRLAAGTSEKIQLSALIAAFNSARDKLEA 528
+DIEYRLA GT+EK+QL +L++AF AR L A
Sbjct: 165 ADIEYRLAFGTNEKLQLGSLVSAFTHARCALVA 197
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 37/47 (78%)
Query: 395 IEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+EK+T + RF +ICNY++KI PA+QSRCTRFRF PLD + + RL +
Sbjct: 1 MEKYTKSTRFALICNYVNKIIPALQSRCTRFRFAPLDPANVTERLRH 47
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 201 SSYKLIILDEADAMTNDAQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHAD 260
+ ++ LD A+ +L VT DG AI+ LS GDMRK LNILQS A +
Sbjct: 29 TRFRFAPLDPANVTERLRHVISEERLDVTEDGLSAIVRLSCGDMRKALNILQSTQMA-SP 87
Query: 261 EVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYKINRFIDE 303
V E+ VY G P +I I WLLNES Y R+I E
Sbjct: 88 HVTEEAVYLCTGNPMPKDIEQISFWLLNESFTNAY---RYISE 127
>gi|255732489|ref|XP_002551168.1| activator 1 40 kDa subunit [Candida tropicalis MYA-3404]
gi|240131454|gb|EER31014.1| activator 1 40 kDa subunit [Candida tropicalis MYA-3404]
Length = 260
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 84/107 (78%), Gaps = 4/107 (3%)
Query: 339 MVLELNASDDRGIGIVRDQIFQFASTKTMHKSS----YKLIILDEADAMTNDAQNALRRI 394
MVLELNASDDRGI +VR+QI FAST+ + SS +KLIILDEADAMTN AQN+LRRI
Sbjct: 1 MVLELNASDDRGIDVVRNQIKNFASTRQIFTSSNGNQFKLIILDEADAMTNVAQNSLRRI 60
Query: 395 IEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
IEK+T N RFCI+ NY K+ PA+ SRCTRFRF P++ S I R++Y
Sbjct: 61 IEKYTKNCRFCILANYSHKLNPALISRCTRFRFTPIEESSIKERMNY 107
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 107/195 (54%), Gaps = 30/195 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY K+ PA+ SRCTRFRF P++ S I R++YVI +E V +T D
Sbjct: 61 IEKYTKNCRFCILANYSHKLNPALISRCTRFRFTPIEESSIKERMNYVIIKEGVKITDDA 120
Query: 61 KKAIIDLSDGDMRKVLNILQS--AATAHADE-VNEDTIFTLLVS---------------- 101
++++ LS GDMR+ LN+LQ+ AA DE +N D I+ + +
Sbjct: 121 LESLLKLSKGDMRRALNVLQACQAAKESQDEIINIDMIYECIGAPHPNDVETCLDSILKD 180
Query: 102 -------RVEKYRP----STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+ KY+ + +D + +I++ ++ +++ +SDIEY ++ G +
Sbjct: 181 DWTTAYLTMNKYKNVKGLALIDLITGFVEILNNYQLNMKTRAEILKGLSDIEYGISRGGN 240
Query: 151 EKIQLSALIAAFNSA 165
+KIQ SA+I A
Sbjct: 241 DKIQTSAIIGVIKDA 255
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 87/185 (47%), Gaps = 60/185 (32%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSS----YKLIILDEADAMTNDAQNALRR-- 224
VLELNASDDRGI +VR+QI FAST+ + SS +KLIILDEADAMTN AQN+LRR
Sbjct: 2 VLELNASDDRGIDVVRNQIKNFASTRQIFTSSNGNQFKLIILDEADAMTNVAQNSLRRII 61
Query: 225 ----------------------------KLPVTP-----------------------DGK 233
+ TP D
Sbjct: 62 EKYTKNCRFCILANYSHKLNPALISRCTRFRFTPIEESSIKERMNYVIIKEGVKITDDAL 121
Query: 234 KAIIDLSDGDMRKVLNILQS--AATAHADE-VNEDTVYNSVGYPTKTEITNILRWLLNES 290
++++ LS GDMR+ LN+LQ+ AA DE +N D +Y +G P ++ L +L +
Sbjct: 122 ESLLKLSKGDMRRALNVLQACQAAKESQDEIINIDMIYECIGAPHPNDVETCLDSILKDD 181
Query: 291 MDLCY 295
Y
Sbjct: 182 WTTAY 186
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y+ + + K KGLAL D++T +++ ++ +++ +SDIEY ++ G ++KIQ
Sbjct: 186 YLTMNKYKNVKGLALIDLITGFVEILNNYQLNMKTRAEILKGLSDIEYGISRGGNDKIQT 245
Query: 513 SALIAAFNSA 522
SA+I A
Sbjct: 246 SAIIGVIKDA 255
>gi|195345297|ref|XP_002039206.1| GM22851 [Drosophila sechellia]
gi|194134432|gb|EDW55948.1| GM22851 [Drosophila sechellia]
Length = 326
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 105/152 (69%), Gaps = 8/152 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP++L YGPPGTGKT+TILA +R+++ F +LELNASD+RGI +VR
Sbjct: 54 LRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGD-MFKDRILELNASDERGINVVRT 112
Query: 357 QIFQFA-----STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+I F+ S + K +K+IILDEAD+MT+ AQ+ALRR +EK + + RFC+ICN
Sbjct: 113 KIKNFSQISASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICN 172
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
Y+S+I I SRC++FRF L ++ RL Y
Sbjct: 173 YVSRIIVPITSRCSKFRFKALGEDKVIDRLKY 204
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 18/134 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP +D++V ++++ + ++ D+ L G + S ++AA
Sbjct: 33 VEKYRPRNVDDVVEQSEVVAVLR--------KCVEGGDLPNMLLYGPPGTGKTSTILAAS 84
Query: 163 NSARDKL---EVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLIILDEAD 212
+ +LELNASD+RGI +VR +I F+ S + K +K+IILDEAD
Sbjct: 85 RQIFGDMFKDRILELNASDERGINVVRTKIKNFSQISASSVRPDGKPCPPFKIIILDEAD 144
Query: 213 AMTNDAQNALRRKL 226
+MT+ AQ+ALRR +
Sbjct: 145 SMTHAAQSALRRTM 158
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + + RFC+ICNY+S+I I SRC++FRF L ++ RL Y+ E E G
Sbjct: 158 MEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKYICEMEGSCYRLKG 217
Query: 61 KKAIIDLSD 69
+ +I+ +D
Sbjct: 218 PEHVINTAD 226
>gi|330507468|ref|YP_004383896.1| replication factor C small subunit [Methanosaeta concilii GP6]
gi|328928276|gb|AEB68078.1| replication factor C small subunit [Methanosaeta concilii GP6]
Length = 323
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++ LPHLLF GPPG GKT ++ ++++ + N + ELNASD+RGI
Sbjct: 25 EIVRRLKSYVKTRNLPHLLFSGPPGVGKTAASISIVKEIFGETWRNNFI-ELNASDERGI 83
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
I+R ++ FA + ++ +K+I LDEADA+TNDAQ+ALRR +E+++ RF + CNY
Sbjct: 84 DIIRHKVKDFARMAPLGEADFKVIFLDEADALTNDAQSALRRTMERYSATTRFILSCNYS 143
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI IQSRC +RF PL + R+ +
Sbjct: 144 SKIIEPIQSRCAVYRFKPLSPEAVTKRIKF 173
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 106/192 (55%), Gaps = 33/192 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RF + CNY SKI IQSRC +RF PL + R+ ++ +E + V+ G
Sbjct: 127 MERYSATTRFILSCNYSSKIIEPIQSRCAVYRFKPLSPEAVTKRIKFIASEEGLRVSDGG 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-VSRVEKYRP----------- 108
AI ++ GDMRK +N LQ+AA DEV+E+TI+ + ++ E+ +
Sbjct: 187 LSAIEYVAGGDMRKAINALQAAALL-GDEVDEETIYQITSTAKPEEIKSFIKTAISGDFV 245
Query: 109 ---STLDEL-----VSHQDIISTIEIPESML----------VDLVLKMSDIEYRLAAGTS 150
+ LD+L +S QD++ I+I +ML V L+ ++ +I++R+ G +
Sbjct: 246 GARAILDDLLLSKGLSGQDVV--IQIHRAMLDLDDIADRDRVKLIDRIGEIDFRMTEGAN 303
Query: 151 EKIQLSALIAAF 162
E+IQL AL+A F
Sbjct: 304 ERIQLEALLAYF 315
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 109/238 (45%), Gaps = 65/238 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP LD++V +I+ ++ +K ++ + L +G + +A I+
Sbjct: 9 IEKYRPERLDDIVGQDEIVRRLK--------SYVKTRNLPHLLFSGPPGVGKTAASISIV 60
Query: 163 NSARDKL---EVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
+ +ELNASD+RGI I+R ++ FA + ++ +K+I LDEADA+TNDAQ
Sbjct: 61 KEIFGETWRNNFIELNASDERGIDIIRHKVKDFARMAPLGEADFKVIFLDEADALTNDAQ 120
Query: 220 NALRRKL---------------------------------PVTPD--------------- 231
+ALRR + P++P+
Sbjct: 121 SALRRTMERYSATTRFILSCNYSSKIIEPIQSRCAVYRFKPLSPEAVTKRIKFIASEEGL 180
Query: 232 -----GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
G AI ++ GDMRK +N LQ+AA DEV+E+T+Y EI + ++
Sbjct: 181 RVSDGGLSAIEYVAGGDMRKAINALQAAALL-GDEVDEETIYQITSTAKPEEIKSFIK 237
>gi|324508707|gb|ADY43673.1| Replication factor C subunit 4 [Ascaris suum]
Length = 354
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 99/153 (64%), Gaps = 8/153 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ-FNAMVLELNASDDRGIGIVR 355
+ + + +LP+LLFYGPPGTGKT+ +A R+L+ ++ VLE+NASD+RGI IVR
Sbjct: 53 LKKVLKGADLPNLLFYGPPGTGKTSAAVALCRELFKNPDVYSDRVLEMNASDERGINIVR 112
Query: 356 DQIFQFASTKTM-------HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
+I +FA H K+IILDEADAMT+ AQ ALRR +EK + + RF +IC
Sbjct: 113 TRIKEFARRAVSSRLPDGSHVLGLKVIILDEADAMTDAAQAALRRTMEKESRSTRFFLIC 172
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
NY+S+I P + SRC +FRF PL RL+Y
Sbjct: 173 NYISRIIPPLTSRCAKFRFKPLSLESQKERLEY 205
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + + RF +ICNY+S+I P + SRC +FRF PL RL+Y+ EQE V V
Sbjct: 159 MEKESRSTRFFLICNYISRIIPPLTSRCAKFRFKPLSLESQKERLEYICEQEDVEVEQAA 218
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH 86
+I+L GD+R+ + LQ+ ++ H
Sbjct: 219 LIELIELCGGDLRRSVTHLQTMSSCH 244
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 74/140 (52%), Gaps = 20/140 (14%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
+V VEKYRP +D++V +++S ++ VLK +D+ L G + SA
Sbjct: 28 VVPWVEKYRPRKVDDIVFQDEVVSVLK--------KVLKGADLPNLLFYGPPGTGKTSAA 79
Query: 159 IAAF-----NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTM-------HKSSYKLI 206
+A N VLE+NASD+RGI IVR +I +FA H K+I
Sbjct: 80 VALCRELFKNPDVYSDRVLEMNASDERGINIVRTRIKEFARRAVSSRLPDGSHVLGLKVI 139
Query: 207 ILDEADAMTNDAQNALRRKL 226
ILDEADAMT+ AQ ALRR +
Sbjct: 140 ILDEADAMTDAAQAALRRTM 159
>gi|195389432|ref|XP_002053381.1| GJ23369 [Drosophila virilis]
gi|194151467|gb|EDW66901.1| GJ23369 [Drosophila virilis]
Length = 356
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 104/152 (68%), Gaps = 8/152 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP++L YGPPGTGKT+TILA AR+++ + +LELNASD+RGI +VR
Sbjct: 57 LRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFGD-MYRDRILELNASDERGINVVRT 115
Query: 357 QIFQFASTKTMH-------KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+I FA + +K+I+LDEAD+MT+ AQ ALRR +EK + + RFC+ICN
Sbjct: 116 KIKNFAQLTASNVRPDGRSCPPFKIIVLDEADSMTHAAQAALRRTMEKESRSTRFCLICN 175
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
Y+S+I I SRC++FRF L + I++RL +
Sbjct: 176 YVSRIIVPITSRCSKFRFKALGETQIIARLQH 207
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + + RFC+ICNY+S+I I SRC++FRF L + I++RL ++ E E V + PD
Sbjct: 161 MEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIIARLQHICELEGVRIDPDA 220
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE--VNEDTIFTL 98
K+I+ +S GDMR+ + LQS E +N D + +
Sbjct: 221 YKSIVRISGGDMRRAITTLQSCYRLKGAEHTINTDDLLEM 260
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 94/217 (43%), Gaps = 75/217 (34%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP ++D++V ++++ + ++ +D+ L G + S ++AA
Sbjct: 36 VEKYRPRSVDDVVEQSEVVAVLR--------KCVEGADLPNMLLYGPPGTGKTSTILAAA 87
Query: 163 NS-----ARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH-------KSSYKLIILDE 210
RD+ +LELNASD+RGI +VR +I FA + +K+I+LDE
Sbjct: 88 RQIFGDMYRDR--ILELNASDERGINVVRTKIKNFAQLTASNVRPDGRSCPPFKIIVLDE 145
Query: 211 ADAMTNDAQNALRRKL---------------------PVT-------------------- 229
AD+MT+ AQ ALRR + P+T
Sbjct: 146 ADSMTHAAQAALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIIARL 205
Query: 230 ------------PDGKKAIIDLSDGDMRKVLNILQSA 254
PD K+I+ +S GDMR+ + LQS
Sbjct: 206 QHICELEGVRIDPDAYKSIVRISGGDMRRAITTLQSC 242
>gi|195038153|ref|XP_001990525.1| GH18198 [Drosophila grimshawi]
gi|193894721|gb|EDV93587.1| GH18198 [Drosophila grimshawi]
Length = 356
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/152 (46%), Positives = 106/152 (69%), Gaps = 8/152 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP++L YGPPGTGKT+TILA AR+++ + +LELNASD+RGI +VR
Sbjct: 57 LRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFGD-MYRERILELNASDERGINVVRT 115
Query: 357 QIFQFA-----STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+I FA S + + +K+I+LDEAD+MT+ AQ ALRR +EK + + RFC+ICN
Sbjct: 116 KIKNFAQLTASSVRPDGRPCPPFKIIVLDEADSMTHAAQAALRRTMEKESRSTRFCLICN 175
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
Y+S+I I SRC++FRF L + I++RL +
Sbjct: 176 YVSRIIVPITSRCSKFRFKALGETQIITRLQH 207
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 63/100 (63%), Gaps = 2/100 (2%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + + RFC+ICNY+S+I I SRC++FRF L + I++RL ++ + E V++ PD
Sbjct: 161 MEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIITRLQHICDLESVSIEPDA 220
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE--VNEDTIFTL 98
++I+ +S GDMR+ + LQS E +N D + +
Sbjct: 221 YQSIVKISGGDMRRAITTLQSCYRLKGAEHTINSDDLLEM 260
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 100/235 (42%), Gaps = 73/235 (31%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP ++D++V ++++ + ++ +D+ L G + S ++AA
Sbjct: 36 VEKYRPRSVDDVVEQSEVVAVLR--------KCVEGADLPNMLLYGPPGTGKTSTILAAA 87
Query: 163 NSARDKL---EVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLIILDEAD 212
+ +LELNASD+RGI +VR +I FA S + + +K+I+LDEAD
Sbjct: 88 RQIFGDMYRERILELNASDERGINVVRTKIKNFAQLTASSVRPDGRPCPPFKIIVLDEAD 147
Query: 213 AMTNDAQNALRRKL---------------------PVT---------------------- 229
+MT+ AQ ALRR + P+T
Sbjct: 148 SMTHAAQAALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIITRLQH 207
Query: 230 ----------PDGKKAIIDLSDGDMRKVLNILQSAATAHADE--VNEDTVYNSVG 272
PD ++I+ +S GDMR+ + LQS E +N D + G
Sbjct: 208 ICDLESVSIEPDAYQSIVKISGGDMRRAITTLQSCYRLKGAEHTINSDDLLEMSG 262
>gi|195111460|ref|XP_002000296.1| GI10150 [Drosophila mojavensis]
gi|193916890|gb|EDW15757.1| GI10150 [Drosophila mojavensis]
Length = 354
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 104/152 (68%), Gaps = 8/152 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP++L YGPPGTGKT+TILA AR+++ + +LELNASD+RGI +VR
Sbjct: 55 LRKCVEGADLPNMLLYGPPGTGKTSTILAAARQIFGD-MYRDRILELNASDERGINVVRT 113
Query: 357 QIFQFASTKTMH-------KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+I FA + +K+I+LDEAD+MT+ AQ ALRR +EK + + RFC+ICN
Sbjct: 114 KIKNFAQLTASNVRPDGRPCPPFKIIVLDEADSMTHAAQAALRRTMEKESRSTRFCLICN 173
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
Y+S+I I SRC++FRF L + I++RL +
Sbjct: 174 YVSRIIVPITSRCSKFRFKALGETQIIARLKH 205
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 57/82 (69%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + + RFC+ICNY+S+I I SRC++FRF L + I++RL ++ QE VN+ PD
Sbjct: 159 MEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIIARLKHICMQENVNIDPDA 218
Query: 61 KKAIIDLSDGDMRKVLNILQSA 82
K+I+ +S GDMR+ + LQS
Sbjct: 219 YKSIVKISGGDMRRAITTLQSC 240
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 75/217 (34%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP +++++V ++++ + ++ +D+ L G + S ++AA
Sbjct: 34 VEKYRPRSVEDVVEQSEVVAVLR--------KCVEGADLPNMLLYGPPGTGKTSTILAAA 85
Query: 163 NS-----ARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH-------KSSYKLIILDE 210
RD+ +LELNASD+RGI +VR +I FA + +K+I+LDE
Sbjct: 86 RQIFGDMYRDR--ILELNASDERGINVVRTKIKNFAQLTASNVRPDGRPCPPFKIIVLDE 143
Query: 211 ADAMTNDAQNALRRKL---------------------PVT-------------------- 229
AD+MT+ AQ ALRR + P+T
Sbjct: 144 ADSMTHAAQAALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGETQIIARL 203
Query: 230 ------------PDGKKAIIDLSDGDMRKVLNILQSA 254
PD K+I+ +S GDMR+ + LQS
Sbjct: 204 KHICMQENVNIDPDAYKSIVKISGGDMRRAITTLQSC 240
>gi|72390425|ref|XP_845507.1| replication factor C, subunit 2 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62360360|gb|AAX80776.1| replication factor C, subunit 2, putative [Trypanosoma brucei]
gi|70802042|gb|AAZ11948.1| replication factor C, subunit 2, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261328911|emb|CBH11889.1| replication factor C, subunit 2, putative [Trypanosoma brucei
gambiense DAL972]
Length = 347
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 93/147 (63%), Gaps = 13/147 (8%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST- 364
+PH LF+GPPGTGKTT ILA A +L+ + V ELNASDDRGI ++R+++ FA T
Sbjct: 53 MPHFLFHGPPGTGKTTAILAVAHELFGPDYIKSRVRELNASDDRGIQVIREKVKSFAQTA 112
Query: 365 ------------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
K +K+IILDEADA+ DAQ ALRR++E F+ RFCI+CNY++
Sbjct: 113 VGNVVQKVQSDGKIYPVPPFKVIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVT 172
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+I I SRC ++RF PL + R+
Sbjct: 173 RIIDPIASRCAKYRFKPLIKEALYERI 199
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 24/141 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
+EKYRP +LDE+ S ++++ L + + + + + L G + +A++A
Sbjct: 22 IEKYRPKSLDEVKSQEEVVQA-------LRSTLRQGASMPHFLFHGPPGTGKTTAILAVA 74
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST-------------KTMHKSSYKL 205
F K V ELNASDDRGI ++R+++ FA T K +K+
Sbjct: 75 HELFGPDYIKSRVRELNASDDRGIQVIREKVKSFAQTAVGNVVQKVQSDGKIYPVPPFKV 134
Query: 206 IILDEADAMTNDAQNALRRKL 226
IILDEADA+ DAQ ALRR +
Sbjct: 135 IILDEADALLPDAQAALRRMM 155
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 28/183 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ RFCI+CNY+++I I SRC ++RF PL + R+ V +E + ++
Sbjct: 155 MEDFSDVTRFCILCNYVTRIIDPIASRCAKYRFKPLIKEALYERISEVASRENIQISRSS 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF----TLLVSRVEKYRPS----TLD 112
A+ +S GD+R + LQ A A+ +++ ++ ++ S ++ Y + + D
Sbjct: 215 IDALDHVSGGDLRLAIMYLQYAQRANGNDLQKEDFVEVSGSVPASMMQTYLAALMMKSFD 274
Query: 113 E------------------LVSHQDIISTIEIP--ESMLVDLVLKMSDIEYRLAAGTSEK 152
E L QD I + P + + LK+ DIE RL+ G +
Sbjct: 275 EVRSVTKRLVQQGYPACQILAQLQDYIVSAACPLNSAQRGSIALKLCDIEKRLSDGCDDF 334
Query: 153 IQL 155
+QL
Sbjct: 335 VQL 337
>gi|291333464|gb|ADD93165.1| putative ATPase family associated with various cellular activities
AAA [uncultured archaeon MedDCM-OCT-S05-C724]
Length = 321
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 95/138 (68%), Gaps = 3/138 (2%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTK-AQFNAMVLELNASDDRGIGIV 354
++ ++ E+ +PHLLF GP G GKTT+ LA AR+++ + Q N + ELNASD+RGI +V
Sbjct: 26 RLKNYVKESSMPHLLFAGPAGIGKTTSALALAREMFGELWQHN--LHELNASDERGIDVV 83
Query: 355 RDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
R +I +FA T + + +K+I LDEADA+T AQ ALRR +EK++ RF + CNY SKI
Sbjct: 84 RGKIKEFARTAPLGEKGFKIIFLDEADALTGAAQAALRRTMEKYSRTCRFVMSCNYSSKI 143
Query: 415 PPAIQSRCTRFRFGPLDS 432
IQSRC FRF P+ +
Sbjct: 144 IDPIQSRCAVFRFRPIKA 161
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 104/189 (55%), Gaps = 28/189 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RF + CNY SKI IQSRC FRF P+ + + L +V +E V VT +
Sbjct: 124 MEKYSRTCRFVMSCNYSSKIIDPIQSRCAVFRFRPIKAEDLEKYLKFVASKENVKVTKEA 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF-TLLVSRVEKYRPS---------- 109
+++ L+ GD+R+ +N LQ AA A EV D ++ + +R E+ + +
Sbjct: 184 FESLTYLAQGDLRRAINGLQMAAAAKT-EVTPDVVYQAVAAARPEEVKDALESALAGNFS 242
Query: 110 ----TLDEL-----VSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
LD L ++ +D+ + +EIP+++ V ++ KM++ ++RL+ G + +I
Sbjct: 243 TAREKLDTLQITYGLAGEDVLRQMHRTVRDLEIPDNIKVLMIEKMAEADFRLSEGANSRI 302
Query: 154 QLSALIAAF 162
Q+ A++A+F
Sbjct: 303 QIEAVVASF 311
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 101/236 (42%), Gaps = 63/236 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP+ L E+V + + + ++ + ES + L+ + AG + AL
Sbjct: 6 IEKYRPNNLSEVVGQEAVTTRLKNYVKESSMPHLL-------FAGPAGIGKTTSALALAR 58
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ + ELNASD+RGI +VR +I +FA T + + +K+I LDEADA+T AQ
Sbjct: 59 EMFGELWQHNLHELNASDERGIDVVRGKIKEFARTAPLGEKGFKIIFLDEADALTGAAQA 118
Query: 221 ALRRKL-----------------------------------------------------P 227
ALRR +
Sbjct: 119 ALRRTMEKYSRTCRFVMSCNYSSKIIDPIQSRCAVFRFRPIKAEDLEKYLKFVASKENVK 178
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
VT + +++ L+ GD+R+ +N LQ AA A EV D VY +V E+ + L
Sbjct: 179 VTKEAFESLTYLAQGDLRRAINGLQMAAAAKT-EVTPDVVYQAVAAARPEEVKDAL 233
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 45/65 (69%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
K+ ++I GLA D+L ++ V LEIP+++ V ++ KM++ ++RL+ G + +IQ+ A
Sbjct: 247 KLDTLQITYGLAGEDVLRQMHRTVRDLEIPDNIKVLMIEKMAEADFRLSEGANSRIQIEA 306
Query: 515 LIAAF 519
++A+F
Sbjct: 307 VVASF 311
>gi|284163322|ref|YP_003401601.1| replication factor C [Haloterrigena turkmenica DSM 5511]
gi|284012977|gb|ADB58928.1| Replication factor C [Haloterrigena turkmenica DSM 5511]
Length = 330
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 108/174 (62%), Gaps = 19/174 (10%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++++ +ELP+L+F GP GTGKTT + AR++Y + LELNASD RGI +VR
Sbjct: 40 RLKQYVERDELPNLMFAGPAGTGKTTAAVGIAREIYGD-DWRENFLELNASDQRGIDVVR 98
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA + + S+++I LDEADA+T+DAQ+ALRR +E+F+ N RF + CNY S+I
Sbjct: 99 DRIKDFARS-SFGGYSHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQII 157
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTD 469
IQSRC FRF L I + +++EI +G+ +TD
Sbjct: 158 DPIQSRCAVFRFTELTEDAIEA-----------------QVREIAANEGIEVTD 194
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 101/193 (52%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF L I +++ + E + VT DG
Sbjct: 137 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIAANEGIEVTDDG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ-- 118
A++ +DGDMRK +N LQ+AA + V+E+T+F + + RP ++++V H
Sbjct: 197 VDALVYAADGDMRKAINGLQAAAV-MGETVDEETVFAITAT----ARPEEVEKMVEHAID 251
Query: 119 ----------------------DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
D+I + +IPE V L+ ++ +++YR+ G
Sbjct: 252 GDFTAARAALEDLLTERGLAGGDVIDQLHRSAWEFDIPEMATVRLLERLGEVDYRITEGA 311
Query: 150 SEKIQLSALIAAF 162
+E++QL A++A+
Sbjct: 312 NERLQLEAMLASL 324
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 98/226 (43%), Gaps = 74/226 (32%)
Query: 103 VEKYRPSTLDELVSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
+EKYRP LDE+ H++I+ + E+P M AGT +
Sbjct: 20 IEKYRPERLDEIKGHENIVPRLKQYVERDELPNLMFAG------------PAGTGKTTAA 67
Query: 156 SALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMT 215
+ + LELNASD RGI +VRD+I FA + + S+++I LDEADA+T
Sbjct: 68 VGIAREIYGDDWRENFLELNASDQRGIDVVRDRIKDFARS-SFGGYSHRIIFLDEADALT 126
Query: 216 NDAQNALRRKL------------------------------------------------- 226
+DAQ+ALRR +
Sbjct: 127 SDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQVREIAA 186
Query: 227 ----PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
VT DG A++ +DGDMRK +N LQ+AA + V+E+TV+
Sbjct: 187 NEGIEVTDDGVDALVYAADGDMRKAINGLQAAAV-MGETVDEETVF 231
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 41/64 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ E+GLA D++ ++ +IPE V L+ ++ +++YR+ G +E++QL A+
Sbjct: 261 LEDLLTERGLAGGDVIDQLHRSAWEFDIPEMATVRLLERLGEVDYRITEGANERLQLEAM 320
Query: 516 IAAF 519
+A+
Sbjct: 321 LASL 324
>gi|322368069|ref|ZP_08042638.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
gi|320552085|gb|EFW93730.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
Length = 325
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 98/150 (65%), Gaps = 2/150 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ +I+ N+LP+LLF G G GKTT +A A++LY + + + LELNASD+RGI
Sbjct: 33 DITARLKSYIERNDLPNLLFSGQAGIGKTTCAVAIAKELYGDS-WQSHFLELNASDERGI 91
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRDQI FA +++I LDEAD++T+DAQ ALRR +E+F+ RF + CNY
Sbjct: 92 DVVRDQIKNFARHDP-GAVDFQIIFLDEADSLTSDAQAALRRTMEQFSDKTRFIMSCNYS 150
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI IQSRC FRFGP+ + + Y
Sbjct: 151 SKIIDPIQSRCAVFRFGPIPDDAVAGYVQY 180
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 105/189 (55%), Gaps = 28/189 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ RF + CNY SKI IQSRC FRFGP+ + + YV ++E + T DG
Sbjct: 134 MEQFSDKTRFIMSCNYSSKIIDPIQSRCAVFRFGPIPDDAVAGYVQYVADEEGIETTDDG 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-VSRVEKYRP----------- 108
+A++ +DGDMRK +N LQ+AA ++V+E+++F + +R E +
Sbjct: 194 IEALVYAADGDMRKAINALQAAAVM-GEQVDEESVFVITSTARPEDIKEMVRHAIDGDFT 252
Query: 109 ---STLDELVSHQ-----DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
S LDEL++ + DII + ++ + V ++ ++ + ++R+ G +E++
Sbjct: 253 RSRSILDELLTERGMAGGDIIDQLHRSIWEFDLDDDDAVRVLERVGEADFRITEGANERV 312
Query: 154 QLSALIAAF 162
QL A++A+
Sbjct: 313 QLEAMLASL 321
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 101/221 (45%), Gaps = 64/221 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD++ H DI + ++ I + L +L+ AG + A+
Sbjct: 17 VEKYRPQTLDDVAGHDDITARLKSYIERNDLPNLLFSGQ-------AGIGKTTCAVAIAK 69
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELNASD+RGI +VRDQI FA +++I LDEAD++T+DAQ
Sbjct: 70 ELYGDSWQSHFLELNASDERGIDVVRDQIKNFARHDP-GAVDFQIIFLDEADSLTSDAQA 128
Query: 221 ALRRKL---------------------PV------------------------------- 228
ALRR + P+
Sbjct: 129 ALRRTMEQFSDKTRFIMSCNYSSKIIDPIQSRCAVFRFGPIPDDAVAGYVQYVADEEGIE 188
Query: 229 -TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
T DG +A++ +DGDMRK +N LQ+AA ++V+E++V+
Sbjct: 189 TTDDGIEALVYAADGDMRKAINALQAAAVM-GEQVDEESVF 228
>gi|342181603|emb|CCC91083.1| putative replication factor C, subunit 2 [Trypanosoma congolense
IL3000]
Length = 347
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 92/147 (62%), Gaps = 13/147 (8%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST- 364
+PH LF+GPPGTGKTT ILA A +++ + V ELNASDDRGI ++R+++ FA
Sbjct: 53 MPHFLFHGPPGTGKTTAILAVAHEMFGPDYIKSRVRELNASDDRGIQVIREKVKSFAQAA 112
Query: 365 ------------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
K +KLIILDEADA+ DAQ ALRR++E F+ RFCI+CNY++
Sbjct: 113 VGTVQQKVQSDGKVYPVPPFKLIILDEADALLPDAQGALRRMMEDFSDVTRFCILCNYVT 172
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+I I SRC ++RF PL + R+
Sbjct: 173 RIIDPIASRCAKYRFKPLIKQALHERI 199
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 24/141 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +LDE+ S ++++ L +L+ + + + L G + +A++A
Sbjct: 22 VEKYRPKSLDEVKSQEEVVQA-------LRSTLLQGASMPHFLFHGPPGTGKTTAILAVA 74
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST-------------KTMHKSSYKL 205
F K V ELNASDDRGI ++R+++ FA K +KL
Sbjct: 75 HEMFGPDYIKSRVRELNASDDRGIQVIREKVKSFAQAAVGTVQQKVQSDGKVYPVPPFKL 134
Query: 206 IILDEADAMTNDAQNALRRKL 226
IILDEADA+ DAQ ALRR +
Sbjct: 135 IILDEADALLPDAQGALRRMM 155
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 52/93 (55%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ RFCI+CNY+++I I SRC ++RF PL + R+ V +E + ++
Sbjct: 155 MEDFSDVTRFCILCNYVTRIIDPIASRCAKYRFKPLIKQALHERISEVASRENIKISTAS 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNED 93
A+ +S GD+R + LQ A AH + + +
Sbjct: 215 MNALDHVSGGDLRLAIMYLQYAQKAHGNNLESE 247
>gi|218884000|ref|YP_002428382.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
gi|218765616|gb|ACL11015.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
Length = 326
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 96/150 (64%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +F++E +PH+LF GPPGTGKTT A LY + +LELNASD+R I
Sbjct: 26 EVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLAHDLYGD-DYRKYMLELNASDERKI 84
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ +FA T+ + +K+++LDEAD MT DAQ ALRR++E ++ RF + NY
Sbjct: 85 EVIRGKVKEFARTRVVGDVPFKIVLLDEADNMTADAQQALRRLMELYSATTRFILTANYP 144
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI IQSR FRF PL ++ RL Y
Sbjct: 145 SKIIEPIQSRTAIFRFSPLSREDVVGRLKY 174
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 35/191 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + NY SKI IQSR FRF PL ++ RL Y+ EK+
Sbjct: 128 MELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLSREDVVGRLKYICNAEKIECAEKA 187
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNE------------- 92
+ I +LS+GDMR+ +NILQ+AA AH EV E
Sbjct: 188 LETIYELSEGDMRRAINILQTAAALGEVVEEAVYKVLGMAHPREVREMINTALAGNFTEA 247
Query: 93 -DTIFTLLVSRVEKYRPSTLDELVS-HQDIIST-IEIPESMLVDLVLKMSDIEYRLAAGT 149
+ + TL++ +Y S LD + H++I S ++IP+ + V + +I++RL G
Sbjct: 248 RNKLRTLMI----EYGLSGLDIVKQIHREIFSQDVKIPDEIRVLIADLAGEIQFRLVEGA 303
Query: 150 SEKIQLSALIA 160
++IQL+A +A
Sbjct: 304 DDEIQLNAFLA 314
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 123/273 (45%), Gaps = 85/273 (31%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG--TSEKIQLSALIAA 161
EKYRP TLDE+V+ ++++ ++ ++ +I + L AG + K ++ +A
Sbjct: 11 EKYRPRTLDEVVNQKEVVVRLK--------KFVEEKNIPHMLFAGPPGTGKTTIAHCLAH 62
Query: 162 FNSARD-KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
D + +LELNASD+R I ++R ++ +FA T+ + +K+++LDEAD MT DAQ
Sbjct: 63 DLYGDDYRKYMLELNASDERKIEVIRGKVKEFARTRVVGDVPFKIVLLDEADNMTADAQQ 122
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR K+
Sbjct: 123 ALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLSREDVVGRLKYICNAEKIE 182
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVG--YPTK--------- 276
+ I +LS+GDMR+ +NILQ+AA EV E+ VY +G +P +
Sbjct: 183 CAEKALETIYELSEGDMRRAINILQTAAA--LGEVVEEAVYKVLGMAHPREVREMINTAL 240
Query: 277 ----TEITNILRWLLNE----SMDLCYKINRFI 301
TE N LR L+ E +D+ +I+R I
Sbjct: 241 AGNFTEARNKLRTLMIEYGLSGLDIVKQIHREI 273
>gi|374724905|gb|EHR76985.1| replication factor C small subunit [uncultured marine group II
euryarchaeote]
Length = 328
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 96/142 (67%), Gaps = 1/142 (0%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
+ ++ E PHLLF GPPGTGKTT +A + ++ + ++ +LE+NASD+R + +R ++
Sbjct: 41 YSEKKEFPHLLFAGPPGTGKTTAAMALTKDVFGE-EYRRNLLEMNASDERKLESIRTKVK 99
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
QFA T + +K+I LDEADA+TNDAQ ALRRI+E++ RF + CNY SKI IQ
Sbjct: 100 QFARTSPYGGAQFKIIFLDEADALTNDAQGALRRIMEQYAETCRFILSCNYSSKIIEPIQ 159
Query: 420 SRCTRFRFGPLDSSLIMSRLDY 441
SRC FRF PL + + +++ +
Sbjct: 160 SRCAVFRFRPLSDADVNAQIHH 181
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 29/188 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E++ RF + CNY SKI IQSRC FRF PL + + +++ +V E E V + D
Sbjct: 135 MEQYAETCRFILSCNYSSKIIEPIQSRCAVFRFRPLSDADVNAQIHHVAEIEGVKLEDDA 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT-------------LLVSRVEKYR 107
A+ +S GD+RK L LQ A+ + + D I+ L+ R + +
Sbjct: 195 GDALTRISQGDLRKALTGLQVASAINM-HITRDLIYETSATAPPEALHQYLMACRDDGFH 253
Query: 108 PSTLDELVS---------------HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+ H+++ + + E +DL M+++EYRL G E+
Sbjct: 254 AARRRLRELLDRYGLAGTDFVNQLHRELYTADFLNEDAKLDLTEWMAEVEYRLVEGGGEQ 313
Query: 153 IQLSALIA 160
IQL AL A
Sbjct: 314 IQLDALTA 321
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VE++RP + E+ I+ + + + + + GT + AL
Sbjct: 17 VERHRPQAVSEIRGQHAIVQRLAVYSEKK-----EFPHLLFAGPPGTGKTTAAMALTKDV 71
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
+ +LE+NASD+R + +R ++ QFA T + +K+I LDEADA+TNDAQ AL
Sbjct: 72 FGEEYRRNLLEMNASDERKLESIRTKVKQFARTSPYGGAQFKIIFLDEADALTNDAQGAL 131
Query: 223 RR 224
RR
Sbjct: 132 RR 133
>gi|269859525|ref|XP_002649487.1| replication factor C subunit [Enterocytozoon bieneusi H348]
gi|220067038|gb|EED44506.1| replication factor C subunit [Enterocytozoon bieneusi H348]
Length = 303
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/127 (56%), Positives = 90/127 (70%), Gaps = 11/127 (8%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAM-VLELNASDDRGIGIVRDQIFQFAS 363
+ P++LFYGPPGTGKTTTI K + N + +LELNASDDRGI IVR+QI QFA
Sbjct: 35 DFPNMLFYGPPGTGKTTTI-----KALIHNKINPINILELNASDDRGINIVRNQIKQFAE 89
Query: 364 TKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCT 423
T T +L+ILDEAD+M+ DAQNALRRI+E + N RFC+ICNY+ I IQSRC
Sbjct: 90 TST----QLRLVILDEADSMSRDAQNALRRIMEDY-ENCRFCLICNYVKNIIDPIQSRCA 144
Query: 424 RFRFGPL 430
+F+F +
Sbjct: 145 KFKFSNM 151
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 111/238 (46%), Gaps = 67/238 (28%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP+ L+ + + +II ++ +L ++ + GT + + ALI +
Sbjct: 8 EKYRPTDLNNICGNTNIIQCLKSFS------LLDFPNMLFYGPPGTGKTTTIKALI---H 58
Query: 164 SARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALR 223
+ + + +LELNASDDRGI IVR+QI QFA T T +L+ILDEAD+M+ DAQNALR
Sbjct: 59 NKINPINILELNASDDRGINIVRNQIKQFAETST----QLRLVILDEADSMSRDAQNALR 114
Query: 224 R--------KLPVTPDGKKAIID-------------LSD--------------------- 241
R + + + K IID ++D
Sbjct: 115 RIMEDYENCRFCLICNYVKNIIDPIQSRCAKFKFSNMTDEEVKCHALEIINKENIVIEDI 174
Query: 242 -----------GDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
GDMRK++N +Q + +++++ V +G + +I I WLLN
Sbjct: 175 EGISMLVSAANGDMRKLINDIQGIKKTY-NKIDKKHVQEFLGIVDQDQINKICGWLLN 231
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 29/182 (15%)
Query: 7 NVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTP-DGKKAII 65
N RFC+ICNY+ I IQSRC +F+F + + +I +E + + +G ++
Sbjct: 122 NCRFCLICNYVKNIIDPIQSRCAKFKFSNMTDEEVKCHALEIINKENIVIEDIEGISMLV 181
Query: 66 DLSDGDMRKVLNILQSAATA-------HADE----VNEDTIFTLL-------VSRVEKYR 107
++GDMRK++N +Q H E V++D I + +S Y
Sbjct: 182 SAANGDMRKLINDIQGIKKTYNKIDKKHVQEFLGIVDQDQINKICGWLLNPEISFKNAYM 241
Query: 108 PSTLDELVSHQDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+ L+E + + I+ T+++ ++ + +S+IEY LA G ++KIQLSAL+
Sbjct: 242 -AILNEDIECETILQEIFKKILTLKLDNKFVI--IQGLSEIEYALAKGCNDKIQLSALVG 298
Query: 161 AF 162
F
Sbjct: 299 LF 300
>gi|432099509|gb|ELK28652.1| Replication factor C subunit 4 [Myotis davidii]
Length = 427
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 102/183 (55%), Gaps = 40/183 (21%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 92 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGHELFRLRVLELNASDERGIQVVRE 151
Query: 357 QIFQFASTKTMHKSS----------------------------------------YKLII 376
++ FA S +K++I
Sbjct: 152 KVKNFAQLTVSGSRSECIIQEPQLPSHCNLAAPTLSFCPLVIIVRQSYGGKPCPPFKIVI 211
Query: 377 LDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIM 436
LDEAD+MT+ AQ ALRR +EK + RFC+ICNY+S+I + SRC++FRF PL +
Sbjct: 212 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQ 271
Query: 437 SRL 439
RL
Sbjct: 272 QRL 274
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 58/97 (59%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V ++ +G
Sbjct: 230 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEG 289
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT 97
++ +S+GD+RK + LQSA + D + T
Sbjct: 290 LSCLVQVSEGDLRKAITFLQSATRLTGGKEVTDKVIT 326
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 52/171 (30%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 68 VPWVEKYRPKCVDEVAFQEEVVAVLK--------KSLEGADLPNLLFYGPPGTGKTSTIL 119
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------------- 202
AA F +L VLELNASD+RGI +VR+++ FA S
Sbjct: 120 AAARELFGHELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSECIIQEPQLPSHC 179
Query: 203 ---------------------------YKLIILDEADAMTNDAQNALRRKL 226
+K++ILDEAD+MT+ AQ ALRR +
Sbjct: 180 NLAAPTLSFCPLVIIVRQSYGGKPCPPFKIVILDEADSMTSAAQAALRRTM 230
>gi|257076223|ref|ZP_05570584.1| replication factor C small subunit [Ferroplasma acidarmanus fer1]
Length = 318
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 92/144 (63%), Gaps = 1/144 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++N ++ + +PHL+F GP GTGKT+T +A A L+ + + +ELNAS+DRGI I+R
Sbjct: 26 RLNAYVKDKNIPHLIFAGPQGTGKTSTAIALAISLFGDS-WKENFMELNASNDRGIDIIR 84
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D I FA + + +K+I LDEAD +T DAQ ALRR +E F RF CNY SKI
Sbjct: 85 DNIKNFAKIRPSNDLGFKIIFLDEADHLTGDAQAALRRTMEMFYNTTRFIFSCNYSSKII 144
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
P IQSRC RF P+D + +RL
Sbjct: 145 PPIQSRCVVLRFKPIDRESMKNRL 168
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 25/185 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F RF CNY SKI P IQSRC RF P+D + +RL + ++E + D
Sbjct: 124 MEMFYNTTRFIFSCNYSSKIIPPIQSRCVVLRFKPIDRESMKNRLKDIAKKENFEIDDDS 183
Query: 61 KKAIIDLSDGDMRKVLNILQS-------AATA---HADEVNEDTIFTLLVSRVEK----- 105
AI ++SDGDMRK +N+LQ+ +ATA + E+N D L+ +E
Sbjct: 184 LDAIYEISDGDMRKAVNVLQAVKLSGKVSATAIYEISGEINRDEYKNLINMAIEGNFNDA 243
Query: 106 ----------YRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
Y S +D + I +I +++++ +++ E+R+ G ++ IQ+
Sbjct: 244 RNYLDKMLIDYGLSGIDIIKGMHSSIRGEQIAYKQKLEIIMALAEAEFRIVEGGTDNIQM 303
Query: 156 SALIA 160
AL+A
Sbjct: 304 DALLA 308
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 105/239 (43%), Gaps = 72/239 (30%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG------TSEKIQLSA 157
EKYRPS L +++ + I+ + + +K +I + + AG TS I L+
Sbjct: 7 EKYRPSKLSDVIGEKGNINRL--------NAYVKDKNIPHLIFAGPQGTGKTSTAIALA- 57
Query: 158 LIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
I+ F + K +ELNAS+DRGI I+RD I FA + + +K+I LDEAD +T D
Sbjct: 58 -ISLFGDSW-KENFMELNASNDRGIDIIRDNIKNFAKIRPSNDLGFKIIFLDEADHLTGD 115
Query: 218 AQNALRRKL---------------------------------PVTPDGKK---------- 234
AQ ALRR + P+ + K
Sbjct: 116 AQAALRRTMEMFYNTTRFIFSCNYSSKIIPPIQSRCVVLRFKPIDRESMKNRLKDIAKKE 175
Query: 235 ----------AIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
AI ++SDGDMRK +N+LQ A + +V+ +Y G + E N++
Sbjct: 176 NFEIDDDSLDAIYEISDGDMRKAVNVLQ--AVKLSGKVSATAIYEISGEINRDEYKNLI 232
>gi|429191613|ref|YP_007177291.1| DNA polymerase III, subunit gamma/tau [Natronobacterium gregoryi
SP2]
gi|448325250|ref|ZP_21514645.1| replication factor C small subunit [Natronobacterium gregoryi SP2]
gi|429135831|gb|AFZ72842.1| DNA polymerase III, gamma/tau subunit [Natronobacterium gregoryi
SP2]
gi|445616034|gb|ELY69670.1| replication factor C small subunit [Natronobacterium gregoryi SP2]
Length = 330
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 98/144 (68%), Gaps = 2/144 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ R++++++LPHL+F GP G GKT + A AR++Y + LELNASD RGI +VR
Sbjct: 40 RLKRYVEQDDLPHLMFAGPAGVGKTASAQAIAREVYGD-DWKENFLELNASDQRGIDVVR 98
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA + + +++I LDEADA+T+DAQ+ALRR +E+F+ N RF + CNY S+I
Sbjct: 99 DRIKDFARS-SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQII 157
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC FRF L + +++
Sbjct: 158 DPIQSRCAVFRFTELGDDAVETQI 181
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 101/193 (52%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF L + +++ + E + +T +G
Sbjct: 137 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELGDDAVETQIREIAATETIELTDNG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ-- 118
A++ +DGDMRK +N LQ+AA + V+E+T+F + + RP ++E+V H
Sbjct: 197 VDALVYAADGDMRKAINGLQAAAV-MGEVVDEETVFAITST----ARPEEVEEMVEHAID 251
Query: 119 ----------------------DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
D+I + +IPE V L+ ++ +++YR+ G
Sbjct: 252 GDFTAARAALEDLLMDRGLAGGDVIDQLHRSAWEFDIPERATVRLLERLGEVDYRITEGA 311
Query: 150 SEKIQLSALIAAF 162
+E++QL A++A+
Sbjct: 312 NERLQLEAMLASL 324
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 105/233 (45%), Gaps = 66/233 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP LDE+ H++I+ ++ + + L L+ + AG + A+
Sbjct: 20 IEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLM-------FAGPAGVGKTASAQAIAR 72
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
K LELNASD RGI +VRD+I FA + + +++I LDEADA+T+DAQ+
Sbjct: 73 EVYGDDWKENFLELNASDQRGIDVVRDRIKDFARS-SFGGYDHRIIFLDEADALTSDAQS 131
Query: 221 ALRRKL---------------------PV------------------------------- 228
ALRR + P+
Sbjct: 132 ALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELGDDAVETQIREIAATETIE 191
Query: 229 -TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY--NSVGYPTKTE 278
T +G A++ +DGDMRK +N LQ+AA + V+E+TV+ S P + E
Sbjct: 192 LTDNGVDALVYAADGDMRKAINGLQAAAV-MGEVVDEETVFAITSTARPEEVE 243
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 42/64 (65%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
++++ +++GLA D++ ++ +IPE V L+ ++ +++YR+ G +E++QL A+
Sbjct: 261 LEDLLMDRGLAGGDVIDQLHRSAWEFDIPERATVRLLERLGEVDYRITEGANERLQLEAM 320
Query: 516 IAAF 519
+A+
Sbjct: 321 LASL 324
>gi|195447178|ref|XP_002071099.1| GK25619 [Drosophila willistoni]
gi|194167184|gb|EDW82085.1| GK25619 [Drosophila willistoni]
Length = 355
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 100/150 (66%), Gaps = 8/150 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP++L YGPPGTGKT+TILA R+++ + +LELNASD+RGI +VR
Sbjct: 55 LKKCVEGADLPNMLLYGPPGTGKTSTILAAGRQIFGD-MYRDRILELNASDERGINVVRT 113
Query: 357 QIFQFASTKTMH-------KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+I FA + +K+IILDEAD+MT+ AQ ALRR +EK + + RFC+ICN
Sbjct: 114 KIKNFAQLSASNVRPDGRPCPPFKIIILDEADSMTHAAQAALRRTMEKESRSTRFCLICN 173
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I I SRCT+FRF L I+ RL
Sbjct: 174 YVSRIIVPITSRCTKFRFKSLGEDQIIERL 203
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 60/103 (58%), Gaps = 7/103 (6%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + + RFC+ICNY+S+I I SRCT+FRF L I+ RL + + E V + DG
Sbjct: 159 MEKESRSTRFCLICNYVSRIIVPITSRCTKFRFKSLGEDQIIERLKLICQAEGVQM--DG 216
Query: 61 K---KAIIDLSDGDMRKVLNILQSAATAHADE--VNEDTIFTL 98
+ K+I+ +S GDMR+ + LQS E +N +F +
Sbjct: 217 EESYKSIVRISGGDMRRAITTLQSCYRLKGPEHIINTQDLFEM 259
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 22/136 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP +++++V ++++ ++ ++ +D+ L G + S ++AA
Sbjct: 34 VEKYRPRSVEDVVEQSEVVAVLK--------KCVEGADLPNMLLYGPPGTGKTSTILAAG 85
Query: 163 NS-----ARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMH-------KSSYKLIILDE 210
RD+ +LELNASD+RGI +VR +I FA + +K+IILDE
Sbjct: 86 RQIFGDMYRDR--ILELNASDERGINVVRTKIKNFAQLSASNVRPDGRPCPPFKIIILDE 143
Query: 211 ADAMTNDAQNALRRKL 226
AD+MT+ AQ ALRR +
Sbjct: 144 ADSMTHAAQAALRRTM 159
>gi|399219086|emb|CCF75973.1| unnamed protein product [Babesia microti strain RI]
Length = 340
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 110/188 (58%), Gaps = 24/188 (12%)
Query: 276 KTEITNILRWL----------LNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILA 325
+ + N+L W+ ++ ++ +N+ + +PHL+FYGPPGTGKT+ LA
Sbjct: 8 ECQTVNMLPWVEKYRPKTISEVSHQINPVSALNQIVKTLNMPHLIFYGPPGTGKTSAALA 67
Query: 326 CARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA------------STKTMHKSSYK 373
AR+L+ K +LELNASDDRGI +VR++I +A + K M +K
Sbjct: 68 LARQLFGKDGLKERILELNASDDRGIDVVREKIKTYARLNISKNRINPETGKPM--PPWK 125
Query: 374 LIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSS 433
++ILDEAD MT+DAQ ALRR IE ++T RF ICNY+ KI + SRC+ RF P+
Sbjct: 126 IVILDEADMMTSDAQAALRRAIENYSTITRFIFICNYIYKIIDPLCSRCSLQRFQPIAKQ 185
Query: 434 LIMSRLDY 441
+SRL +
Sbjct: 186 AQISRLVF 193
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 120/275 (43%), Gaps = 86/275 (31%)
Query: 79 LQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLV--L 136
+ SA A VN ++ VEKYRP T+ E VSHQ I+ P S L +V L
Sbjct: 1 MTSADCAECQTVN-------MLPWVEKYRPKTISE-VSHQ--IN----PVSALNQIVKTL 46
Query: 137 KMSDIEYRLAAGTSEKIQLSALIAA-FNSARDKLEVLELNASDDRGIGIVRDQIFQFA-- 193
M + + GT + AL F K +LELNASDDRGI +VR++I +A
Sbjct: 47 NMPHLIFYGPPGTGKTSAALALARQLFGKDGLKERILELNASDDRGIDVVREKIKTYARL 106
Query: 194 ----------STKTMHKSSYKLIILDEADAMTNDAQNALRRKL----------------- 226
+ K M +K++ILDEAD MT+DAQ ALRR +
Sbjct: 107 NISKNRINPETGKPM--PPWKIVILDEADMMTSDAQAALRRAIENYSTITRFIFICNYIY 164
Query: 227 ----PVT---------PDGKKA------------------------IIDLSDGDMRKVLN 249
P+ P K+A ++ +S GD+R+ +
Sbjct: 165 KIIDPLCSRCSLQRFQPIAKQAQISRLVFICEQEKISSFTNEAMEALVRVSQGDLRRSIT 224
Query: 250 ILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
+LQ+ + + + + ED VY+ G P + + ++L+
Sbjct: 225 LLQTIGSLYKN-ITEDIVYDIAGIPPRVVVIDLLK 258
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKV-NVTPD 59
IE ++T RF ICNY+ KI + SRC+ RF P+ +SRL ++ EQEK+ + T +
Sbjct: 147 IENYSTITRFIFICNYIYKIIDPLCSRCSLQRFQPIAKQAQISRLVFICEQEKISSFTNE 206
Query: 60 GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF 96
+A++ +S GD+R+ + +LQ+ + + + + ED ++
Sbjct: 207 AMEALVRVSQGDLRRSITLLQTIGSLYKN-ITEDIVY 242
>gi|48477659|ref|YP_023365.1| replication factor C small subunit [Picrophilus torridus DSM 9790]
gi|50400868|sp|Q6L1I0.1|RFCS_PICTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|48430307|gb|AAT43172.1| replication factor C, small subunit [Picrophilus torridus DSM 9790]
Length = 318
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 90/140 (64%), Gaps = 1/140 (0%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
F+ +LPHL+F GP GTGKT+T +A +L+ + LELNASD+RGI I+R+ I
Sbjct: 30 FVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGD-DWKENFLELNASDERGIDIIRNNIK 88
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
FA + +K +K+I LDEAD +TN+AQ ALRR +E F + RF CNY SKI P IQ
Sbjct: 89 DFAKIRPSNKLGFKIIFLDEADQLTNEAQAALRRTMEMFYSTTRFIFSCNYSSKIIPPIQ 148
Query: 420 SRCTRFRFGPLDSSLIMSRL 439
SRC RF PLD + +L
Sbjct: 149 SRCVVLRFRPLDKEAMERKL 168
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 97/185 (52%), Gaps = 25/185 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F + RF CNY SKI P IQSRC RF PLD + +L + + EK ++ D
Sbjct: 124 MEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNEKFDIDDDS 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH----------ADEVNED---TIFTLLVSRVEKYR 107
AI ++SDGDMRK +N++Q+ + + E+N++ + +L ++
Sbjct: 184 LDAIYEISDGDMRKAINVMQAIQSTGEIKPSKIYEISGEINKNEYKNLISLSLNGAFSDA 243
Query: 108 PSTLDEL-----VSHQDIISTIE-------IPESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
S LD++ +S DII + I +++++ +++ E+R++ G S+ +Q+
Sbjct: 244 KSLLDKMLVDYGLSGIDIIRGMHSAIRNERIANRQKLEILIALAEFEFRISQGGSDNVQM 303
Query: 156 SALIA 160
AL+A
Sbjct: 304 DALLA 308
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 102/242 (42%), Gaps = 66/242 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
EKYRP LD+++ + I+T++ +K D+ + + AG + + S IA
Sbjct: 6 TEKYRPKRLDDVIGEDENINTLK--------SFVKNGDLPHLIFAGPAGTGKTSTAIALT 57
Query: 161 -AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
K LELNASD+RGI I+R+ I FA + +K +K+I LDEAD +TN+AQ
Sbjct: 58 IELFGDDWKENFLELNASDERGIDIIRNNIKDFAKIRPSNKLGFKIIFLDEADQLTNEAQ 117
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR K
Sbjct: 118 AALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNEKF 177
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
+ D AI ++SDGDMRK +N++Q A E+ +Y G K E N++
Sbjct: 178 DIDDDSLDAIYEISDGDMRKAINVMQ--AIQSTGEIKPSKIYEISGEINKNEYKNLISLS 235
Query: 287 LN 288
LN
Sbjct: 236 LN 237
>gi|84998148|ref|XP_953795.1| replication factor C subunit (RPC2 ) [Theileria annulata]
gi|65304792|emb|CAI73117.1| replication factor C subunit (RPC2 homologue) , putative [Theileria
annulata]
Length = 336
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 99/155 (63%), Gaps = 10/155 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + I+ +PH++F+GPPGTGKT+ LA AR++Y VLELNASD+RGI +VRD
Sbjct: 31 MEQIIETFNMPHMIFHGPPGTGKTSAALAMARQIYGLEGMRERVLELNASDERGIDVVRD 90
Query: 357 QIFQFASTKTMHK----------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
+I + + +YK+IILDEAD +T DAQ ALRR+IE +++ RF +
Sbjct: 91 RIKTYTRINISNNRVNPETNRVMPNYKMIILDEADMITADAQAALRRVIENYSSISRFIL 150
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ICNYL KI I SRC+ F F P++++ + RL Y
Sbjct: 151 ICNYLHKIIGPIYSRCSVFHFKPIETNSQIDRLKY 185
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 60/101 (59%), Gaps = 6/101 (5%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE +++ RF +ICNYL KI I SRC+ F F P++++ + RL Y+ QE + P
Sbjct: 139 IENYSSISRFILICNYLHKIIGPIYSRCSVFHFKPIETNSQIDRLKYICNQEGITFDP-- 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA---DEVNEDTIFTL 98
K + +S GDMRK + ILQ + A +E+ E+ I+++
Sbjct: 197 -KFLTTISSGDMRKSITILQVILGSTACLYNEITENAIYSV 236
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 73/250 (29%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGT---SEKIQLS 156
V VEKYRP + +++ +S +E +++ M + + GT S + ++
Sbjct: 7 VPWVEKYRPKKISDVIFQTQAVSIME----QIIE-TFNMPHMIFHGPPGTGKTSAALAMA 61
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK----------SSYKLI 206
I R++ VLELNASD+RGI +VRD+I + + +YK+I
Sbjct: 62 RQIYGLEGMRER--VLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMPNYKMI 119
Query: 207 ILDEADAMTNDAQNALRRKL---------------------------------PVTPDGK 233
ILDEAD +T DAQ ALRR + P+ + +
Sbjct: 120 ILDEADMITADAQAALRRVIENYSSISRFILICNYLHKIIGPIYSRCSVFHFKPIETNSQ 179
Query: 234 -----------------KAIIDLSDGDMRKVLNILQSAATAHA---DEVNEDTVYNSVGY 273
K + +S GDMRK + ILQ + A +E+ E+ +Y+ G
Sbjct: 180 IDRLKYICNQEGITFDPKFLTTISSGDMRKSITILQVILGSTACLYNEITENAIYSVSGK 239
Query: 274 PTKTEITNIL 283
P K + +I
Sbjct: 240 PPKRVVESIF 249
>gi|71033715|ref|XP_766499.1| replication factor C subunit 2 [Theileria parva strain Muguga]
gi|68353456|gb|EAN34216.1| replication factor C subunit 2, putative [Theileria parva]
Length = 335
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 99/155 (63%), Gaps = 10/155 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +PH++F+GPPGTGKT+ LA AR++Y VLELNASD+RGI +VRD
Sbjct: 31 MEQIVETFNMPHMIFHGPPGTGKTSAALAMARQIYGLEGMRERVLELNASDERGIDVVRD 90
Query: 357 QIFQFASTKTMHK----------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
+I + + +YK+IILDEAD +T DAQ ALRR+IE +++ RF +
Sbjct: 91 RIKTYTRINISNNRVNPETNRVMPNYKMIILDEADMITADAQAALRRVIENYSSISRFVL 150
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ICNYL KI I SRC+ F F P++++ + RL Y
Sbjct: 151 ICNYLHKIIGPIYSRCSVFHFKPIETNSQVDRLKY 185
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE +++ RF +ICNYL KI I SRC+ F F P++++ + RL Y+ QE +
Sbjct: 139 IENYSSISRFVLICNYLHKIIGPIYSRCSVFHFKPIETNSQVDRLKYICNQEGITFDQKA 198
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
+ + +S GDMRK + ILQS A + +E+ E+ I
Sbjct: 199 LEFLTTVSSGDMRKSITILQSTACLY-NEITENAI 232
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 20/138 (14%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGT---SEKIQLS 156
V VEKYRP + +++ +S +E +V+ M + + GT S + ++
Sbjct: 7 VPWVEKYRPKKISDVIFQTQAVSIME----QIVE-TFNMPHMIFHGPPGTGKTSAALAMA 61
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK----------SSYKLI 206
I R++ VLELNASD+RGI +VRD+I + + +YK+I
Sbjct: 62 RQIYGLEGMRER--VLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMPNYKMI 119
Query: 207 ILDEADAMTNDAQNALRR 224
ILDEAD +T DAQ ALRR
Sbjct: 120 ILDEADMITADAQAALRR 137
>gi|340054249|emb|CCC48545.1| putative replication factor C, subunit 2 [Trypanosoma vivax Y486]
Length = 347
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 93/147 (63%), Gaps = 13/147 (8%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
+PH LF+GPPGTGKTT ILA A++L+ + V ELNASDDRGI ++R+++ FA +
Sbjct: 53 MPHFLFHGPPGTGKTTAILAVAQELFGPDYIRSRVRELNASDDRGIQVIREKVKAFAQSA 112
Query: 366 TMHKSS-------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
+KLIILDEADA+ DAQ ALRR++E ++ RFCI+CNY+S
Sbjct: 113 VGGVGQKVQSDGNVYPVPPFKLIILDEADALLPDAQAALRRMMEDYSDVTRFCILCNYVS 172
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+I I SRC ++RF PL + R+
Sbjct: 173 RIIDPIASRCAKYRFKPLVRHALRERI 199
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFCI+CNY+S+I I SRC ++RF PL + R+ V +E + ++
Sbjct: 155 MEDYSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVRHALRERILEVATREGLRMSDAS 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEV-NEDTI 95
A+ S GDMR + LQ A AH D++ NED +
Sbjct: 215 IDALDRTSGGDMRLAIMYLQHAQKAHGDDLTNEDFV 250
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 24/141 (17%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +LDE+ S ++++ + + + + + + L G + +A++A
Sbjct: 22 VEKYRPKSLDEVKSQEEVVQALR-------STLRQGASMPHFLFHGPPGTGKTTAILAVA 74
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------------YKL 205
F + V ELNASDDRGI ++R+++ FA + +KL
Sbjct: 75 QELFGPDYIRSRVRELNASDDRGIQVIREKVKAFAQSAVGGVGQKVQSDGNVYPVPPFKL 134
Query: 206 IILDEADAMTNDAQNALRRKL 226
IILDEADA+ DAQ ALRR +
Sbjct: 135 IILDEADALLPDAQAALRRMM 155
>gi|313229768|emb|CBY18583.1| unnamed protein product [Oikopleura dioica]
Length = 350
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 117/193 (60%), Gaps = 18/193 (9%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
I+ ELP++LFYGPPGTGKT+TILA AR ++ + V ELNASD+RGI +VR+++
Sbjct: 55 LIEGKELPNMLFYGPPGTGKTSTILAMARDMFGNLA-SERVCELNASDERGIAVVREKVK 113
Query: 360 QFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
FA T + + +KLIILDEAD+MT AQ ALRR +E ++ + RFC++CNY+S
Sbjct: 114 NFAMTTANSQRADGKKCPNFKLIILDEADSMTKSAQEALRRTMEVYSKSTRFCLLCNYVS 173
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEK--GLALTDI 470
+I I SR +FRF L+ + Y+ I ++I E +E+ +A D+
Sbjct: 174 RIIDPITSRTAKFRF-----RLLPKEIQYNQIRHIR-EAENVQISENAVEELISVAAGDM 227
Query: 471 LTEISLL--VHRL 481
++ L +HRL
Sbjct: 228 RRAVNFLQSLHRL 240
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 58/95 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ + RFC++CNY+S+I I SR +FRF L + +++ ++ E E V ++ +
Sbjct: 156 MEVYSKSTRFCLLCNYVSRIIDPITSRTAKFRFRLLPKEIQYNQIRHIREAENVQISENA 215
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
+ +I ++ GDMR+ +N LQS H DE+ D +
Sbjct: 216 VEELISVAAGDMRRAVNFLQSLHRLHEDEITPDDV 250
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 23/139 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP ++++ + +++++ ML ++++ ++ L G + S ++A
Sbjct: 30 IEKYRPKGVNDVCAQEEVVA-------MLKAVLIEGKELPNMLFYGPPGTGKTSTILAM- 81
Query: 163 NSARDKL------EVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIILD 209
ARD V ELNASD+RGI +VR+++ FA T + + +KLIILD
Sbjct: 82 --ARDMFGNLASERVCELNASDERGIAVVREKVKNFAMTTANSQRADGKKCPNFKLIILD 139
Query: 210 EADAMTNDAQNALRRKLPV 228
EAD+MT AQ ALRR + V
Sbjct: 140 EADSMTKSAQEALRRTMEV 158
>gi|448312591|ref|ZP_21502333.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
gi|445601042|gb|ELY55036.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
Length = 330
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 108/174 (62%), Gaps = 19/174 (10%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++++++LPH++F GP G GKT + A AR++Y + LELNASD RGI +VR
Sbjct: 40 RLKNYVEQDDLPHIMFAGPAGVGKTASSQAIAREIYGD-DWRENFLELNASDQRGIDVVR 98
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA + + +Y++I LDEADA+T+DAQ+ALRR +E+F+ N RF + CNY S+I
Sbjct: 99 DRIKDFARS-SFGGYNYRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQII 157
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTD 469
IQSRC FRF L I + +++EI +G+A+TD
Sbjct: 158 DPIQSRCAVFRFTELTDDAIEA-----------------QVREIADTEGIAVTD 194
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 36/187 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF L I +++ + + E + VT DG
Sbjct: 137 MEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDAIEAQVREIADTEGIAVTDDG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ-- 118
A++ +DGDMRK +N LQ+AA + V+E+T+F + + RP ++ +V H
Sbjct: 197 VDALVYAADGDMRKAINGLQAAAV-MGETVDEETVFAITST----ARPEEVEAMVDHAIA 251
Query: 119 ----------------------DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
D+I + +IPE V L+ ++ +++YR+ G
Sbjct: 252 GDFTAARAALEDLLMERGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLGEVDYRITEGA 311
Query: 150 SEKIQLS 156
+E++QL
Sbjct: 312 NERLQLE 318
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 108/234 (46%), Gaps = 68/234 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE--KIQLSALIA 160
+EKYRP LDE+ H++II ++ ++ D+ + + AG + K S IA
Sbjct: 20 IEKYRPERLDEIKGHENIIPRLK--------NYVEQDDLPHIMFAGPAGVGKTASSQAIA 71
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D E LELNASD RGI +VRD+I FA + + +Y++I LDEADA+T+DAQ
Sbjct: 72 REIYGDDWRENFLELNASDQRGIDVVRDRIKDFARS-SFGGYNYRIIFLDEADALTSDAQ 130
Query: 220 NALRRKL----------------------------------------------------- 226
+ALRR +
Sbjct: 131 SALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDDAIEAQVREIADTEGI 190
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY--NSVGYPTKTE 278
VT DG A++ +DGDMRK +N LQ+AA + V+E+TV+ S P + E
Sbjct: 191 AVTDDGVDALVYAADGDMRKAINGLQAAAV-MGETVDEETVFAITSTARPEEVE 243
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 37/58 (63%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 513
++++ +E+GLA D++ ++ +IPE V L+ ++ +++YR+ G +E++QL
Sbjct: 261 LEDLLMERGLAGGDVIDQLHRSAWEFDIPEQATVRLLERLGEVDYRITEGANERLQLE 318
>gi|452820599|gb|EME27639.1| replication factor C subunit 2/4 [Galdieria sulphuraria]
Length = 321
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 91/146 (62%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ + LPHLL GPPG GKTT IL AR+L + F+ VLELNASDDRGI ++R
Sbjct: 26 RLQAVVHGGSLPHLLLSGPPGCGKTTMILCLARQLLGEEWFSQAVLELNASDDRGIDVIR 85
Query: 356 DQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
++ FA K ++ +K++ILDEAD+MT AQ ALRR +E + T RF + CN SKI
Sbjct: 86 SKVKTFAQQKMSLPSGKHKIVILDEADSMTEGAQQALRRTMEIYATTTRFALACNTPSKI 145
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLD 440
IQSRC R L+ S I RL+
Sbjct: 146 IEPIQSRCAVVRLRRLEDSEIAERLE 171
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 75/134 (55%), Gaps = 19/134 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TLDE+V + ++S ++ V+ + + L +G + + ++
Sbjct: 6 VEKYRPKTLDEVVGNPQVVSRLQA--------VVHGGSLPHLLLSGPPGCGKTTMILCL- 56
Query: 163 NSARDKL-------EVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAM 214
AR L VLELNASDDRGI ++R ++ FA K ++ +K++ILDEAD+M
Sbjct: 57 --ARQLLGEEWFSQAVLELNASDDRGIDVIRSKVKTFAQQKMSLPSGKHKIVILDEADSM 114
Query: 215 TNDAQNALRRKLPV 228
T AQ ALRR + +
Sbjct: 115 TEGAQQALRRTMEI 128
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 27/186 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + T RF + CN SKI IQSRC R L+ S I RL+ V+ E V G
Sbjct: 126 MEIYATTTRFALACNTPSKIIEPIQSRCAVVRLRRLEDSEIAERLEQVLRLENVEWENSG 185
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-------------------VS 101
+AI+ +DGDMR LN Q+ +++++ +F + V+
Sbjct: 186 LEAILFTADGDMRNALNNAQATVCGFG-KLSQENVFKVCDQPHPNLVKQILESALEQNVT 244
Query: 102 RVEKYRPSTLDELVSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
+ + S ++ S DI+ T+ E+ E + ++++ + ++ G + IQ
Sbjct: 245 KSNEILCSLWNKGYSALDIVQTLFRVARSHEMNEHLRLEVMKIVGKTHMKIMEGCASLIQ 304
Query: 155 LSALIA 160
L+AL +
Sbjct: 305 LTALTS 310
>gi|320100775|ref|YP_004176367.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
gi|319753127|gb|ADV64885.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
Length = 347
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +F++E +PH+LF GPPGTGKTT A LY + +LELNASD+R I
Sbjct: 47 EIVVRLKKFVEEKSIPHMLFAGPPGTGKTTMAHCLAHDLYGD-DYKKYMLELNASDERKI 105
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ +FA ++ + + +K+++LDEAD MT DAQ ALRR++E ++ RF + NY
Sbjct: 106 EVIRGKVKEFARSRVVGEVPFKIVLLDEADNMTADAQQALRRLMELYSATTRFILTANYP 165
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI IQSR FRF PL ++ RL Y
Sbjct: 166 SKIIEPIQSRTAIFRFSPLRKEDVVERLRY 195
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 70/244 (28%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG---TSEKIQLSALIA 160
EKYRP TLDE+V+ ++I+ ++ ++ I + L AG T + L
Sbjct: 32 EKYRPRTLDEVVNQKEIVVRLK--------KFVEEKSIPHMLFAGPPGTGKTTMAHCLAH 83
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
K +LELNASD+R I ++R ++ +FA ++ + + +K+++LDEAD MT DAQ
Sbjct: 84 DLYGDDYKKYMLELNASDERKIEVIRGKVKEFARSRVVGEVPFKIVLLDEADNMTADAQQ 143
Query: 221 ALRRKL---------------------PV---------TPDGKKAII------------- 237
ALRR + P+ +P K+ ++
Sbjct: 144 ALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLRKEDVVERLRYICNAEKVK 203
Query: 238 ----------DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+LS+GDMR+ +NILQ+ TA EV E+ VY +G E+ R +L
Sbjct: 204 CDERALETIYELSEGDMRRAINILQT--TAALGEVVEEAVYKVIGLAHPREV----REML 257
Query: 288 NESM 291
NE++
Sbjct: 258 NEAL 261
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 35/191 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + NY SKI IQSR FRF PL ++ RL Y+ EKV
Sbjct: 149 MELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLRKEDVVERLRYICNAEKVKCDERA 208
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNE------------- 92
+ I +LS+GDMR+ +NILQ+ A AH EV E
Sbjct: 209 LETIYELSEGDMRRAINILQTTAALGEVVEEAVYKVIGLAHPREVREMLNEALSGNFTEA 268
Query: 93 -DTIFTLLVSRVEKYRPSTLDELVS-HQDIIST-IEIPESMLVDLVLKMSDIEYRLAAGT 149
+ + TL++ +Y S +D + H++I S ++IP+ M V + +I++RL G
Sbjct: 269 RNKLRTLMI----EYGLSGVDIIRQIHKEIFSQEVKIPDEMRVLIADLAGEIQFRLVEGA 324
Query: 150 SEKIQLSALIA 160
++IQL+A +A
Sbjct: 325 DDEIQLNAFLA 335
>gi|390938548|ref|YP_006402286.1| replication factor C [Desulfurococcus fermentans DSM 16532]
gi|390191655|gb|AFL66711.1| Replication factor C [Desulfurococcus fermentans DSM 16532]
Length = 326
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +F++E +PH+LF GPPGTGKTT A LY + +LELNASD+R I
Sbjct: 26 EVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLAHDLYGD-DYRKYMLELNASDERKI 84
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ +FA + + +K+++LDEAD MT DAQ ALRR++E ++ RF + NY
Sbjct: 85 EVIRGKVKEFARARVVGDVPFKIVLLDEADNMTADAQQALRRLMELYSATTRFILTANYP 144
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI IQSR FRF PL ++ RL Y
Sbjct: 145 SKIIEPIQSRTAIFRFSPLSREDVVGRLKY 174
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 35/191 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + NY SKI IQSR FRF PL ++ RL Y+ EK+
Sbjct: 128 MELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLSREDVVGRLKYICNAEKIECAEKA 187
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNE------------- 92
+ I +LS+GDMR+ +NILQ+AA AH EV E
Sbjct: 188 LETIYELSEGDMRRAINILQTAAALGEVVEEAVYKVLGMAHPREVREMINTALAGNFTEA 247
Query: 93 -DTIFTLLVSRVEKYRPSTLDELVS-HQDIIST-IEIPESMLVDLVLKMSDIEYRLAAGT 149
+ + TL++ +Y S LD + H++I S ++IP+ + V + +I++RL G
Sbjct: 248 RNKLRTLMI----EYGLSGLDIVKQIHREIFSQDVKIPDEIRVLIADLAGEIQFRLVEGA 303
Query: 150 SEKIQLSALIA 160
++IQL+A +A
Sbjct: 304 DDEIQLNAFLA 314
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 122/273 (44%), Gaps = 85/273 (31%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG--TSEKIQLSALIAA 161
EKYRP TLDE+V+ ++++ ++ ++ +I + L AG + K ++ +A
Sbjct: 11 EKYRPRTLDEVVNQKEVVVRLK--------KFVEEKNIPHMLFAGPPGTGKTTIAHCLAH 62
Query: 162 FNSARD-KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
D + +LELNASD+R I ++R ++ +FA + + +K+++LDEAD MT DAQ
Sbjct: 63 DLYGDDYRKYMLELNASDERKIEVIRGKVKEFARARVVGDVPFKIVLLDEADNMTADAQQ 122
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR K+
Sbjct: 123 ALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLSREDVVGRLKYICNAEKIE 182
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVG--YPTK--------- 276
+ I +LS+GDMR+ +NILQ+AA EV E+ VY +G +P +
Sbjct: 183 CAEKALETIYELSEGDMRRAINILQTAAA--LGEVVEEAVYKVLGMAHPREVREMINTAL 240
Query: 277 ----TEITNILRWLLNE----SMDLCYKINRFI 301
TE N LR L+ E +D+ +I+R I
Sbjct: 241 AGNFTEARNKLRTLMIEYGLSGLDIVKQIHREI 273
>gi|194763220|ref|XP_001963731.1| GF21175 [Drosophila ananassae]
gi|190618656|gb|EDV34180.1| GF21175 [Drosophila ananassae]
Length = 352
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 105/152 (69%), Gaps = 8/152 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP++L YGPPGTGKT+TILA R+++ + +LELNASD+RGI +VR
Sbjct: 53 LRKCVEGGDLPNMLLYGPPGTGKTSTILAAGRQIFGD-MYKNRILELNASDERGINVVRT 111
Query: 357 QIFQFA-----STKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+I F+ S + + +K++ILDEAD+MT+ AQ+ALRR +EK + + RFC+ICN
Sbjct: 112 KIKTFSQLAASSVRPDGRPCPPFKIVILDEADSMTHAAQSALRRTMEKESQSTRFCLICN 171
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
Y+S+I I SRC++FRF L +++RL +
Sbjct: 172 YVSRIIVPITSRCSKFRFKSLGEEKVIARLQF 203
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + + RFC+ICNY+S+I I SRC++FRF L +++RL ++ EQE V + PD
Sbjct: 157 MEKESQSTRFCLICNYVSRIIVPITSRCSKFRFKSLGEEKVIARLQFICEQEGVQIDPDA 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE--VNEDTIFTL 98
K+I+ +S GD+R+ + LQS E +N +F +
Sbjct: 217 YKSIVKISGGDLRRAITTLQSCFRLKGPEHTINTADLFEM 256
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 71/215 (33%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP +D++V ++++ + ++ D+ L G + S ++AA
Sbjct: 32 VEKYRPRNVDDVVEQSEVVAVLR--------KCVEGGDLPNMLLYGPPGTGKTSTILAAG 83
Query: 163 NSARD---KLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKLIILDEAD 212
K +LELNASD+RGI +VR +I F+ S + + +K++ILDEAD
Sbjct: 84 RQIFGDMYKNRILELNASDERGINVVRTKIKTFSQLAASSVRPDGRPCPPFKIVILDEAD 143
Query: 213 AMTNDAQNALRRKL---------------------PVT---------------------- 229
+MT+ AQ+ALRR + P+T
Sbjct: 144 SMTHAAQSALRRTMEKESQSTRFCLICNYVSRIIVPITSRCSKFRFKSLGEEKVIARLQF 203
Query: 230 ----------PDGKKAIIDLSDGDMRKVLNILQSA 254
PD K+I+ +S GD+R+ + LQS
Sbjct: 204 ICEQEGVQIDPDAYKSIVKISGGDLRRAITTLQSC 238
>gi|255638181|gb|ACU19404.1| unknown [Glycine max]
Length = 149
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/134 (53%), Positives = 91/134 (67%), Gaps = 8/134 (5%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKT-- 366
+LFYGPPGTGKTTT LA A +L+ + VLELNASDDRGI +VR +I FA+
Sbjct: 1 MLFYGPPGTGKTTTALAIAHQLFGPELYKFRVLELNASDDRGINVVRTKIKDFAAVAVGT 60
Query: 367 -MHKSSY-----KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQS 420
KS Y K+I+LDEAD+MT DAQNALRR +E ++ RF ICNY+S+I + S
Sbjct: 61 NQRKSGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLAS 120
Query: 421 RCTRFRFGPLDSSL 434
RC +FRF PL +S+
Sbjct: 121 RCAKFRFKPLLNSM 134
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 45/67 (67%), Gaps = 8/67 (11%)
Query: 168 KLEVLELNASDDRGIGIVRDQIFQFASTKT---MHKSSY-----KLIILDEADAMTNDAQ 219
K VLELNASDDRGI +VR +I FA+ KS Y K+I+LDEAD+MT DAQ
Sbjct: 29 KFRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKSGYPCPPFKIIVLDEADSMTEDAQ 88
Query: 220 NALRRKL 226
NALRR +
Sbjct: 89 NALRRTM 95
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSL 40
+E ++ RF ICNY+S+I + SRC +FRF PL +S+
Sbjct: 95 METYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLLNSM 134
>gi|403221343|dbj|BAM39476.1| replication factor C subunit [Theileria orientalis strain Shintoku]
Length = 336
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 99/156 (63%), Gaps = 11/156 (7%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG-IGIVR 355
+ + I+ +PH++F+GPPGTGKT+ LA AR++Y VLELNASD+RG I +VR
Sbjct: 31 MEQIIETFNMPHMIFHGPPGTGKTSAALAMARQIYGLEGMRERVLELNASDERGRIDVVR 90
Query: 356 DQIFQFASTKTMHKS----------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
D+I + + +YK+IILDEAD +T DAQ ALRR+IE ++ RF
Sbjct: 91 DRIKTYTRINISNNKINPETNRVMPNYKIIILDEADMITADAQAALRRVIENYSGISRFI 150
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ICNYL KI I SRC+ F F P+D+S + RL+Y
Sbjct: 151 LICNYLHKIIGPIYSRCSVFHFKPIDTSSQVKRLEY 186
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RF +ICNYL KI I SRC+ F F P+D+S + RL+Y+ +E +
Sbjct: 140 IENYSGISRFILICNYLHKIIGPIYSRCSVFHFKPIDTSSQVKRLEYICSKEGIKYDTKA 199
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
+ + +S GDMRK + ILQS A+ + +E+ E+ ++++
Sbjct: 200 LEFLTKVSSGDMRKGITILQSTASLY-NEITENAVYSV 236
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 71/139 (51%), Gaps = 21/139 (15%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGT---SEKIQLS 156
V VEKYRP L +++ +S +E +++ M + + GT S + ++
Sbjct: 7 VPWVEKYRPKKLSDVIFQTQAVSIME----QIIE-TFNMPHMIFHGPPGTGKTSAALAMA 61
Query: 157 ALIAAFNSARDKLEVLELNASDDRG-IGIVRDQIFQFASTKTMHKS----------SYKL 205
I R++ VLELNASD+RG I +VRD+I + + +YK+
Sbjct: 62 RQIYGLEGMRER--VLELNASDERGRIDVVRDRIKTYTRINISNNKINPETNRVMPNYKI 119
Query: 206 IILDEADAMTNDAQNALRR 224
IILDEAD +T DAQ ALRR
Sbjct: 120 IILDEADMITADAQAALRR 138
>gi|395645923|ref|ZP_10433783.1| Replication factor C small subunit [Methanofollis liminatans DSM
4140]
gi|395442663|gb|EJG07420.1| Replication factor C small subunit [Methanofollis liminatans DSM
4140]
Length = 322
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 96/149 (64%), Gaps = 3/149 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKA-QFNAMVLELNASDDRG 350
++ ++ ++ LPHLLF GP G GKTT +A AR+ + + Q N ELNASD+RG
Sbjct: 25 EIVERLRSYVRSGSLPHLLFTGPAGVGKTTAAVALAREFFGETWQMN--FRELNASDERG 82
Query: 351 IGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
I +VR+QI QFA T + +++K++ LDEADA+T DAQ ALRR +E + RF + CNY
Sbjct: 83 IDVVRNQIKQFARTSPLGGATFKVLFLDEADALTPDAQAALRRTMENYAQTCRFILSCNY 142
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI IQSRC +RF LD + + ++
Sbjct: 143 SSKIIDPIQSRCAIYRFKGLDEAAVAEQV 171
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 114/263 (43%), Gaps = 71/263 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP TL+++V ++I+ + + L L+ + AG + AL
Sbjct: 9 IEKYRPQTLEDMVGQEEIVERLRSYVRSGSLPHLL-------FTGPAGVGKTTAAVALAR 61
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
F ++ ELNASD+RGI +VR+QI QFA T + +++K++ LDEADA+T DAQ
Sbjct: 62 EFFGETWQMNFRELNASDERGIDVVRNQIKQFARTSPLGGATFKVLFLDEADALTPDAQA 121
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR ++
Sbjct: 122 ALRRTMENYAQTCRFILSCNYSSKIIDPIQSRCAIYRFKGLDEAAVAEQVRRVAAAEEIS 181
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+T D AI +++GDMRK LN LQ AA +D ++ +Y + EI ++L
Sbjct: 182 LTDDAVHAIAYIAEGDMRKALNALQGAAIL-SDRIDARMIYETTSTAKPEEIADLL---- 236
Query: 288 NESMDLCYKINRFIDENELPHLL 310
LC K + + L HLL
Sbjct: 237 ----GLCTKGDFTGAQGALRHLL 255
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 30/190 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF + CNY SKI IQSRC +RF LD + + ++ V E++++T D
Sbjct: 127 MENYAQTCRFILSCNYSSKIIDPIQSRCAIYRFKGLDEAAVAEQVRRVAAAEEISLTDDA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAA----------------TAHADEVNEDTIFTLLVSRVE 104
AI +++GDMRK LN LQ AA TA +E+ + + L
Sbjct: 187 VHAIAYIAEGDMRKALNALQGAAILSDRIDARMIYETTSTAKPEEIAD--LLGLCTKGDF 244
Query: 105 KYRPSTLDELVSHQDI------------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
L L+ ++ I +++ ++ ++ V + + + ++R++ G +
Sbjct: 245 TGAQGALRHLLRNRGIAPGELINQCFRALTSYQMDTALKVAYIDHIGEADFRISEGADAE 304
Query: 153 IQLSALIAAF 162
IQ+ ALIA F
Sbjct: 305 IQMDALIALF 314
>gi|124801405|ref|XP_001349685.1| replication factor C, subunit 2 [Plasmodium falciparum 3D7]
gi|3845290|gb|AAC71957.1| replication factor C, subunit 2 [Plasmodium falciparum 3D7]
Length = 330
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 96/146 (65%), Gaps = 10/146 (6%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA--- 362
+PHL+F+GPPGTGKT+ I A A +L+ K + VLELNASDDRGI +VR++I +
Sbjct: 37 MPHLIFHGPPGTGKTSAINALAHELFGKENISERVLELNASDDRGINVVREKIKAYTRIS 96
Query: 363 -STKTMHKS------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
S +H S+KL++LDEAD MT DAQ+ALRRIIE ++ RF +ICNY+ KI
Sbjct: 97 ISKNKIHSETKEVLPSWKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKIS 156
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
I SRC+ +RF + ++ +L Y
Sbjct: 157 DPIFSRCSCYRFQSIPINIKKEKLLY 182
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 22/149 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LD++V + + M++ V++ ++ + + G + SA+ A
Sbjct: 7 VEKYRPKRLDDIVHQNNAV--------MMLKEVVRTKNMPHLIFHGPPGTGKTSAINALA 58
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA----STKTMHKS------SYKLIIL 208
F VLELNASDDRGI +VR++I + S +H S+KL++L
Sbjct: 59 HELFGKENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVL 118
Query: 209 DEADAMTNDAQNALRRKLPVTPDGKKAII 237
DEAD MT DAQ+ALRR + + + + I+
Sbjct: 119 DEADMMTEDAQSALRRIIEIYSNVTRFIL 147
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 94/192 (48%), Gaps = 30/192 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RF +ICNY+ KI+ I SRC+ +RF + ++ +L Y+ + E +++ D
Sbjct: 136 IEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYICQNENIDIVDDA 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH----------ADEVNEDTIFTLLVSRVEKYRPST 110
+ II+ ++GD+R+ ++ILQ + + + D I ++ +
Sbjct: 196 LEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDVSGLPSDNIVYKIIDACKMKDLKL 255
Query: 111 LDELVSHQDII------------------STIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+++ V QDII + E +S+ ++L++S +YRL G ++
Sbjct: 256 VEKTV--QDIIEDGFDVAYIFKSFNNYFVTNTEYEDSLKYQILLELSRHDYRLHCGATQY 313
Query: 153 IQLSALIAAFNS 164
IQL + ++ +S
Sbjct: 314 IQLLSFASSVHS 325
>gi|397780149|ref|YP_006544622.1| Replication factor C small subunit [Methanoculleus bourgensis MS2]
gi|396938651|emb|CCJ35906.1| Replication factor C small subunit Short=RFC small subunit
[Methanoculleus bourgensis MS2]
Length = 324
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/149 (45%), Positives = 96/149 (64%), Gaps = 3/149 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKA-QFNAMVLELNASDDRG 350
D+ ++ ++ LPHLLF G G GKTT +A AR+L+ + Q N E+NASD+RG
Sbjct: 27 DIVVRLQSYVRTGNLPHLLFTGSAGIGKTTAAVALARELFGDSWQMN--FREMNASDERG 84
Query: 351 IGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
I +VR+QI +FA T + +++K++ LDEADA+T DAQ ALRR +E + RF + CNY
Sbjct: 85 IDVVRNQIKEFARTSPLAGATFKVLFLDEADALTTDAQAALRRTMETYARTCRFILSCNY 144
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI IQSRC +RF PLD ++ +
Sbjct: 145 SSKIIDPIQSRCAIYRFRPLDREAVIEEI 173
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 101/236 (42%), Gaps = 63/236 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP LDE+V QDI+ ++ + L L+ S AG + AL
Sbjct: 11 IEKYRPRRLDEMVGQQDIVVRLQSYVRTGNLPHLLFTGS-------AGIGKTTAAVALAR 63
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
++ E+NASD+RGI +VR+QI +FA T + +++K++ LDEADA+T DAQ
Sbjct: 64 ELFGDSWQMNFREMNASDERGIDVVRNQIKEFARTSPLAGATFKVLFLDEADALTTDAQA 123
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR L
Sbjct: 124 ALRRTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEEITRIAAIEGLT 183
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
VT AI+ ++ GDMRK +N LQ AA E++E+ +Y EI +L
Sbjct: 184 VTEGALDAIVYVASGDMRKAINALQGAAILRP-EIDEEMIYEITATARPDEIDELL 238
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF + CNY SKI IQSRC +RF PLD ++ + + E + VT
Sbjct: 129 METYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEEITRIAAIEGLTVTEGA 188
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDEL------ 114
AI+ ++ GDMRK +N LQ AA E++E+ I+ + + RP +DEL
Sbjct: 189 LDAIVYVASGDMRKAINALQGAAILRP-EIDEEMIYEITAT----ARPDEIDELLDLSME 243
Query: 115 ------------------VSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
++ ++I+ ++P + V L+ + + ++RL+ G
Sbjct: 244 GRFDEAEQALSELIRGRGIAPNELINQCYRSLVRRDLPRPLKVRLIDALGETDFRLSEGA 303
Query: 150 SEKIQLSALIAAF 162
S IQ+ AL+A F
Sbjct: 304 SSDIQMEALLAKF 316
>gi|11559504|gb|AAG37987.1|AF071409_1 replication factor C subunit 2 [Plasmodium falciparum]
Length = 330
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 96/146 (65%), Gaps = 10/146 (6%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA--- 362
+PHL+F+GPPGTGKT+ I A A +L+ K + VLELNASDDRGI +VR++I +
Sbjct: 37 MPHLIFHGPPGTGKTSAINALAHELFGKENISERVLELNASDDRGINVVREKIKAYTRIS 96
Query: 363 -STKTMHKS------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
S +H S+KL++LDEAD MT DAQ+ALRRIIE ++ RF +ICNY+ KI
Sbjct: 97 ISKNKIHSETKEVLPSWKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKIS 156
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
I SRC+ +RF + ++ +L Y
Sbjct: 157 DPIFSRCSCYRFQSIPINIKKEKLLY 182
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 22/149 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LD++V + + M++ V++ ++ + + G + SA+ A
Sbjct: 7 VEKYRPKRLDDIVHQNNAV--------MMLKEVVRTKNMPHLIFHGPPGTGKTSAINALA 58
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA----STKTMHKS------SYKLIIL 208
F VLELNASDDRGI +VR++I + S +H S+KL++L
Sbjct: 59 HELFGKENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVL 118
Query: 209 DEADAMTNDAQNALRRKLPVTPDGKKAII 237
DEAD MT DAQ+ALRR + + + + I+
Sbjct: 119 DEADMMTEDAQSALRRIIEIYSNVTRFIL 147
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 93/192 (48%), Gaps = 30/192 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RF +ICNY+ KI+ I SRC+ +RF + ++ +L Y+ + E +++ D
Sbjct: 136 IEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYICQNENIDIVDDA 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH----------ADEVNEDTIFTLLVSRVEKYRPST 110
+ II+ ++GD+R+ ++ILQ + + + D I ++ +
Sbjct: 196 LEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDVSGLPSDNIVYKIIDACKMKDLKL 255
Query: 111 LDELVSHQDII------------------STIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+++ V QDII + E +S+ ++L++ +YRL G ++
Sbjct: 256 VEKTV--QDIIEDGFDVAYIFKSFNNYFVTNTEYEDSLKYQILLELFRHDYRLHCGATQY 313
Query: 153 IQLSALIAAFNS 164
IQL + ++ +S
Sbjct: 314 IQLLSFASSVHS 325
>gi|156088043|ref|XP_001611428.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798682|gb|EDO07860.1| conserved hypothetical protein [Babesia bovis]
Length = 336
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 98/155 (63%), Gaps = 10/155 (6%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ ++ ++PH++F+GPPGTGKT+ LA AR++Y VLELNASD+RGI +VR+
Sbjct: 29 MRHIVESYDMPHMIFHGPPGTGKTSAALAIARQIYGPEGMKERVLELNASDERGINVVRE 88
Query: 357 QIFQFA---------STKTMH-KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
+I + +T+T ++K+IILDEAD +T DAQ ALRRIIE F+ RF +
Sbjct: 89 RIKTYTRLNISSNRVNTQTGRVMPNFKMIILDEADMITPDAQAALRRIIENFSNISRFIL 148
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ICNY+ KI I SRC+ F F P+ + RL Y
Sbjct: 149 ICNYVHKIIGPIYSRCSAFHFKPISQDAQIERLRY 183
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 118/268 (44%), Gaps = 79/268 (29%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP++LD++V H + ++T+ +++ D+ + + G + SA +
Sbjct: 5 VPWVEKYRPASLDDIVFHTNAMTTMR--------HIVESYDMPHMIFHGPPGTGKTSAAL 56
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFA---------STKTMH-KSSYKL 205
A + K VLELNASD+RGI +VR++I + +T+T ++K+
Sbjct: 57 AIARQIYGPEGMKERVLELNASDERGINVVRERIKTYTRLNISSNRVNTQTGRVMPNFKM 116
Query: 206 IILDEADAMTNDAQNALRRKL---------------------------------PVTPDG 232
IILDEAD +T DAQ ALRR + P++ D
Sbjct: 117 IILDEADMITPDAQAALRRIIENFSNISRFILICNYVHKIIGPIYSRCSAFHFKPISQDA 176
Query: 233 K--------------------KAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVG 272
+ + +S GDMR+ + ILQS A+ ++V E+ V N G
Sbjct: 177 QIERLRYICTAESLEYEDHALDFLTQVSQGDMRRSVTILQSTASLF-NKVTEEAVRNVSG 235
Query: 273 YPTKTEITNILRWLLNESMD---LCYKI 297
YP K + I + D LC KI
Sbjct: 236 YPPKEIVNEIFATCKGTTQDVEELCKKI 263
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE F+ RF +ICNY+ KI I SRC+ F F P+ + RL Y+ E +
Sbjct: 137 IENFSNISRFILICNYVHKIIGPIYSRCSAFHFKPISQDAQIERLRYICTAESLEYEDHA 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
+ +S GDMR+ + ILQS A+ ++V E+ +
Sbjct: 197 LDFLTQVSQGDMRRSVTILQSTASLF-NKVTEEAV 230
>gi|68070283|ref|XP_677053.1| replication factor C, subunit 2 [Plasmodium berghei strain ANKA]
gi|56497014|emb|CAH96737.1| replication factor C, subunit 2, putative [Plasmodium berghei]
Length = 330
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 98/151 (64%), Gaps = 10/151 (6%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
I +PHL+F+GPPGTGKT+ I A A +L+ K N VLELNASDDRGI +VR++I
Sbjct: 32 IKTKNMPHLIFHGPPGTGKTSAINALAHELFGKENINERVLELNASDDRGINVVREKIKA 91
Query: 361 FA---------STKTMHK-SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+ +T+T + +KL++LDEAD MT DAQ+ALRRIIE ++ RF +ICNY
Sbjct: 92 YTRISISKNKINTETNEQLPPWKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNY 151
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ KI I SRC+ +RF + ++ +L Y
Sbjct: 152 IHKISDPIYSRCSCYRFQGIPINIKKEKLLY 182
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 74/135 (54%), Gaps = 20/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD++V + IS ML +++ M + + GT + ++AL
Sbjct: 7 VEKYRPKKLDDIVHQTNAIS-------MLKEVIKTKNMPHLIFHGPPGTGKTSAINALAH 59
Query: 161 A-FNSARDKLEVLELNASDDRGIGIVRDQIFQFA---------STKTMHK-SSYKLIILD 209
F VLELNASDDRGI +VR++I + +T+T + +KL++LD
Sbjct: 60 ELFGKENINERVLELNASDDRGINVVREKIKAYTRISISKNKINTETNEQLPPWKLVVLD 119
Query: 210 EADAMTNDAQNALRR 224
EAD MT DAQ+ALRR
Sbjct: 120 EADMMTEDAQSALRR 134
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 99/190 (52%), Gaps = 26/190 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RF +ICNY+ KI+ I SRC+ +RF + ++ +L Y+ + E ++++ +
Sbjct: 136 IEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKEKLLYICKNENIDISDNA 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA----DEV-------NEDTIFTLLVS-RVEKYR- 107
II+ + GD+R+ +++LQ A + D V D I ++ S +++ ++
Sbjct: 196 LSKIIETTQGDLRRAVSVLQLCACIDSKITVDSVLDVSGLPGNDVILKIVNSCKMKNFKI 255
Query: 108 -PSTLDELVSHQDIISTI------------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
T+ +++ +S I +I +S+ +++++S ++RL G ++ IQ
Sbjct: 256 LEKTIQDIIEDGFDVSYIFKALNEYFVMSQDINDSIKYQILMELSRHDFRLHNGATKYIQ 315
Query: 155 LSALIAAFNS 164
L + ++ +S
Sbjct: 316 LMSFASSVHS 325
>gi|432959658|ref|XP_004086351.1| PREDICTED: replication factor C subunit 2-like [Oryzias latipes]
Length = 355
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/145 (50%), Positives = 96/145 (66%), Gaps = 2/145 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI +VR
Sbjct: 60 RLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGSAMKDA-VLELNASNDRGIDVVR 118
Query: 356 DQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
++I FA K T+ K +K+IILDEAD+MT+ AQ ALRRI+E ++ RF + CN KI
Sbjct: 119 NKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRIMEIYSKTTRFALACNASDKI 178
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC R+ L I+SRL
Sbjct: 179 IEPIQSRCAVLRYAKLTDGQILSRL 203
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 117/251 (46%), Gaps = 64/251 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V +++ +S +E+ E + ++++ GT + + L
Sbjct: 40 VEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 92
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A + K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 93 ALLGSAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 152
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR +L
Sbjct: 153 QALRRIMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYAKLTDGQILSRLQEVIEKERL 212
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
V+ DG +A+I S GDMR+ LN LQS + +N + V+ P + ++L
Sbjct: 213 SVSDDGLEAVIFTSQGDMRQALNNLQSTHSGFG-YINSENVFKVCDEPHPLLVKSMLGHC 271
Query: 287 LNESMDLCYKI 297
++ ++D YK+
Sbjct: 272 VDGNIDEAYKV 282
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 27/190 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L I+SRL VIE+E+++V+ DG
Sbjct: 159 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYAKLTDGQILSRLQEVIEKERLSVSDDG 218
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT--------LLVSRVEKYRPSTLD 112
+A+I S GDMR+ LN LQS + +N + +F L+ S + +D
Sbjct: 219 LEAVIFTSQGDMRQALNNLQSTHSGFG-YINSENVFKVCDEPHPLLVKSMLGHCVDGNID 277
Query: 113 E---LVSH--------QDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
E +V H +DII I ++ E + ++ + ++ R+A G + +Q
Sbjct: 278 EAYKVVEHLWGLGYSPEDIIGNIFRVCKTYQMAEYLKLEFIKEIGYTNMRVAEGVNSLLQ 337
Query: 155 LSALIAAFNS 164
++ L+ S
Sbjct: 338 MAGLLGRLCS 347
>gi|310831184|ref|YP_003969827.1| putative replication factor C subunit [Cafeteria roenbergensis
virus BV-PW1]
gi|309386368|gb|ADO67228.1| putative replication factor C subunit [Cafeteria roenbergensis
virus BV-PW1]
Length = 314
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 96/146 (65%), Gaps = 3/146 (2%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I ID + LPHL+FYGPPGTGKT+TILA +++ E NAS+DRGI +R+
Sbjct: 29 IKNLIDNHNLPHLIFYGPPGTGKTSTILAVCNEIFPDEIKYNRCFEFNASNDRGIKFIRE 88
Query: 357 QIFQFASTKTMHKSS---YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
+I + ++ K + + K+IILDE D +T D+Q ALRRI+E ++N RFC+ICNY +K
Sbjct: 89 KIKKISNQKIKNYPNTPHIKIIILDEVDTLTTDSQYALRRIMENSSSNTRFCLICNYPNK 148
Query: 414 IPPAIQSRCTRFRFGPLDSSLIMSRL 439
+ I SRC +FRF P+ + ++ +L
Sbjct: 149 LIEPIISRCAQFRFKPIPTKIMEEKL 174
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++N RFC+ICNY +K+ I SRC +FRF P+ + ++ +L +++QEK+ D
Sbjct: 130 MENSSSNTRFCLICNYPNKLIEPIISRCAQFRFKPIPTKIMEEKLTDILKQEKIKNKKDI 189
Query: 61 KKAIIDLSDGDMRKVLNILQ 80
II+ S GD+R ++ LQ
Sbjct: 190 TNLIIENSYGDLRLSISYLQ 209
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 69/128 (53%), Gaps = 15/128 (11%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP L+E++ + I +++ ++ ++ + + G + S ++A N
Sbjct: 9 EKYRPKKLNEIIHQNETI--------LVIKNLIDNHNLPHLIFYGPPGTGKTSTILAVCN 60
Query: 164 SA-RDKLE---VLELNASDDRGIGIVRDQIFQFASTKTMHKSS---YKLIILDEADAMTN 216
D+++ E NAS+DRGI +R++I + ++ K + + K+IILDE D +T
Sbjct: 61 EIFPDEIKYNRCFEFNASNDRGIKFIREKIKKISNQKIKNYPNTPHIKIIILDEVDTLTT 120
Query: 217 DAQNALRR 224
D+Q ALRR
Sbjct: 121 DSQYALRR 128
>gi|327401750|ref|YP_004342589.1| replication factor C small subunit [Archaeoglobus veneficus SNP6]
gi|327317258|gb|AEA47874.1| Replication factor C small subunit [Archaeoglobus veneficus SNP6]
Length = 322
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 94/140 (67%), Gaps = 1/140 (0%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
+++ +PHLLF GPPGTGKT + +A AR L+ + + +E+NASD+RGI +VR +I
Sbjct: 33 YVERKNIPHLLFAGPPGTGKTASAIALARDLFGE-NWRDNFIEMNASDERGIDVVRHKIK 91
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
+FA T + + +K+I LDEADA+T DAQ ALRR +E ++ RF + CNY+S+I IQ
Sbjct: 92 EFARTAPIGDAPFKIIFLDEADALTPDAQAALRRTMEMYSKICRFILSCNYVSRIIEPIQ 151
Query: 420 SRCTRFRFGPLDSSLIMSRL 439
SRC F+F P+ + RL
Sbjct: 152 SRCAVFKFRPVPPEAMRKRL 171
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 103/196 (52%), Gaps = 30/196 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CNY+S+I IQSRC F+F P+ + RL + E E V +T DG
Sbjct: 127 MEMYSKICRFILSCNYVSRIIEPIQSRCAVFKFRPVPPEAMRKRLLEICENEGVKITEDG 186
Query: 61 KKAIIDLSDGDMRKVLNILQSA----------------ATAHADEVNEDTIFTLLVSRVE 104
+A+I +S+GD RK +N LQ A ATA +E+ + + T L +
Sbjct: 187 LEALIYVSNGDFRKAINALQGAAALGKVVDAEAIYQITATARPEELA-NLLETALEGKFM 245
Query: 105 KYRPSTLDEL-----VSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+ R S LD+L +S +D++S + + E M V L+ K+ +I++RL G E+
Sbjct: 246 EAR-SILDKLMIEYGMSGEDVVSQLFREILSSGMDEKMKVLLIDKLGEIDFRLTEGAHER 304
Query: 153 IQLSALIAAFNSARDK 168
IQL A +A ++ K
Sbjct: 305 IQLDAYLAYLSTVGKK 320
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 109/240 (45%), Gaps = 71/240 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TL E+V +++I L+ V + +I + L AG + ++ IA
Sbjct: 9 VEKYRPRTLKEVVGQEEVIQR-------LMGYVER-KNIPHLLFAGPPGTGKTASAIAL- 59
Query: 163 NSARD------KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
ARD + +E+NASD+RGI +VR +I +FA T + + +K+I LDEADA+T
Sbjct: 60 --ARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGDAPFKIIFLDEADALTP 117
Query: 217 DAQNALRRKL---------------------------------PVTP------------- 230
DAQ ALRR + PV P
Sbjct: 118 DAQAALRRTMEMYSKICRFILSCNYVSRIIEPIQSRCAVFKFRPVPPEAMRKRLLEICEN 177
Query: 231 -------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
DG +A+I +S+GD RK +N LQ AA A V+ + +Y E+ N+L
Sbjct: 178 EGVKITEDGLEALIYVSNGDFRKAINALQGAA-ALGKVVDAEAIYQITATARPEELANLL 236
>gi|124485340|ref|YP_001029956.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
gi|158512813|sp|A2SQT3.1|RFCS_METLZ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|124362881|gb|ABN06689.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
Length = 321
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 92/144 (63%), Gaps = 1/144 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ ++ LPHLLF G G GKTT +A AR+++ +N ELNASD+RGI
Sbjct: 25 DVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMFGDT-WNMNFRELNASDERGI 83
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI QFA T + +++K++ LDEADA+T DAQ ALRR +E + RF + CNY
Sbjct: 84 DVVRNQIKQFARTAPLGDATFKILFLDEADALTQDAQAALRRTMENYAETCRFILSCNYS 143
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLI 435
SKI IQSRC +RF PL I
Sbjct: 144 SKIIDPIQSRCAIYRFRPLTDEAI 167
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 115/270 (42%), Gaps = 69/270 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP L E+V QD++ + + L L+ S AG + AL
Sbjct: 9 IEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGS-------AGVGKTTCAVALAR 61
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ ELNASD+RGI +VR+QI QFA T + +++K++ LDEADA+T DAQ
Sbjct: 62 EMFGDTWNMNFRELNASDERGIDVVRNQIKQFARTAPLGDATFKILFLDEADALTQDAQA 121
Query: 221 ALRRKL---------------------------------PVTPD---------GKK---- 234
ALRR + P+T + KK
Sbjct: 122 ALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIARIAKKEGIT 181
Query: 235 -------AIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
AI +S GDMRK +N LQ AA +D V + +Y EIT++L L
Sbjct: 182 IDEGAYVAITYVSLGDMRKAINALQGAAIV-SDHVTAENIYAITSNAKPQEITDLLARCL 240
Query: 288 NESMDLCYKI------NRFIDENELPHLLF 311
+ ++ ++ I NEL + L+
Sbjct: 241 EGDFETAERMLHALMYDKGIAPNELLNQLY 270
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 29/188 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF + CNY SKI IQSRC +RF PL I + + ++E + +
Sbjct: 127 MENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIARIAKKEGITIDEGA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL-----------LVSRVEKYRPS 109
AI +S GDMRK +N LQ AA +D V + I+ + L++R +
Sbjct: 187 YVAITYVSLGDMRKAINALQGAAIV-SDHVTAENIYAITSNAKPQEITDLLARCLEGDFE 245
Query: 110 TLDELVS-----------------HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
T + ++ +++I + + + VDL+ + + ++R++ G
Sbjct: 246 TAERMLHALMYDKGIAPNELLNQLYREISRSETLDRRLKVDLIDHLGEADFRMSEGADAD 305
Query: 153 IQLSALIA 160
IQ+ AL+A
Sbjct: 306 IQMDALLA 313
>gi|440490537|gb|ELQ70082.1| replication factor C subunit 3 [Magnaporthe oryzae P131]
Length = 373
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 141/300 (47%), Gaps = 79/300 (26%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ +N+F+D N LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 63 DILATVNKFVDANRLPHLLLYGPPGTGKTSTILALARRIYGADNVRQMVLELNASDDRGI 122
Query: 352 GIVRDQIFQFASTK-------------------------TMHKSSYKLIILDEADAMTND 386
+VR+QI FASTK T SYKLIILDEADAMTN
Sbjct: 123 DVVREQIKTFASTKQIFTLGSTKPAAASSSASTSNNPSATRPTPSYKLIILDEADAMTNT 182
Query: 387 A--------QNALR---------RIIEKFTTN---------VRFC----------IICNY 410
A +N L+ R++E+ T N VR + +
Sbjct: 183 AQMALRRIMENPLKEADIRVLVDRVVEEETVNIRPDAVDALVRLARGDMRRALNVLQACH 242
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISF----------------FNIIIWYI 454
S P ++ + P+ I Y+ I+ +++
Sbjct: 243 ASSTP--LREKGAAADDKPVVRDTITVETIYNCIAAPPPEAIKEILDTLLATSDVVSCLG 300
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
I +K +GLAL DI+T +S + +LE+ +++ + +++IE+R+A G E +Q A
Sbjct: 301 TINALKTTRGLALADIITALSEELVKLEVKPEVMITWLDGLAEIEHRVAGGAGEAVQTGA 360
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 114/252 (45%), Gaps = 69/252 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP +L ++ HQDI++T+ + VD ++ + GT + + AL
Sbjct: 47 VEKYRPVSLADVSGHQDILATV----NKFVD-ANRLPHLLLYGPPGTGKTSTILALARRI 101
Query: 163 NSARD-KLEVLELNASDDRGIGIVRDQIFQFASTK------------------------- 196
A + + VLELNASDDRGI +VR+QI FASTK
Sbjct: 102 YGADNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGSTKPAAASSSASTSNNPSA 161
Query: 197 TMHKSSYKLIILDEADAMTNDAQNALRR----------------------KLPVTPDGKK 234
T SYKLIILDEADAMTN AQ ALRR + + PD
Sbjct: 162 TRPTPSYKLIILDEADAMTNTAQMALRRIMENPLKEADIRVLVDRVVEEETVNIRPDAVD 221
Query: 235 AIIDLSDGDMRKVLNILQSAATAHA----------------DEVNEDTVYNSVGYPTKTE 278
A++ L+ GDMR+ LN+LQ+ + D + +T+YN + P
Sbjct: 222 ALVRLARGDMRRALNVLQACHASSTPLREKGAAADDKPVVRDTITVETIYNCIAAPPPEA 281
Query: 279 ITNILRWLLNES 290
I IL LL S
Sbjct: 282 IKEILDTLLATS 293
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 44/190 (23%)
Query: 12 IICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGD 71
II + +T Q R PL + I +D V+E+E VN+ PD A++ L+ GD
Sbjct: 171 IILDEADAMTNTAQMALRRIMENPLKEADIRVLVDRVVEEETVNIRPDAVDALVRLARGD 230
Query: 72 MRKVLNILQSAATAHA----------------DEVNEDTIFTLLVSRVEKYRPSTLDELV 115
MR+ LN+LQ+ + D + +TI+ + + + LD L+
Sbjct: 231 MRRALNVLQACHASSTPLREKGAAADDKPVVRDTITVETIYNCIAAPPPEAIKEILDTLL 290
Query: 116 SHQDIIST----------------------------IEIPESMLVDLVLKMSDIEYRLAA 147
+ D++S +E+ +++ + +++IE+R+A
Sbjct: 291 ATSDVVSCLGTINALKTTRGLALADIITALSEELVKLEVKPEVMITWLDGLAEIEHRVAG 350
Query: 148 GTSEKIQLSA 157
G E +Q A
Sbjct: 351 GAGEAVQTGA 360
>gi|126179196|ref|YP_001047161.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
gi|150415672|sp|A3CUX9.1|RFCS_METMJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|125861990|gb|ABN57179.1| replication factor C small subunit [Methanoculleus marisnigri JR1]
Length = 322
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 93/145 (64%), Gaps = 1/145 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ ++ LPHLLF G G GKTT +A AR+ + + + E+NASD+RGI
Sbjct: 25 DIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFGDS-WQTNFREMNASDERGI 83
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI +FA T + +++K++ LDEADA+T DAQ ALRR +E + RF + CNY
Sbjct: 84 DVVRNQIKEFARTSPLAGATFKILFLDEADALTTDAQAALRRTMETYARTCRFILSCNYS 143
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIM 436
SKI IQSRC +RF PLD ++
Sbjct: 144 SKIIDPIQSRCAIYRFRPLDREAVI 168
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 116/286 (40%), Gaps = 73/286 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP LDE+V +DI+ ++ + L L+ S AG + AL
Sbjct: 9 IEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGS-------AGIGKTTAAVALAR 61
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
F + E+NASD+RGI +VR+QI +FA T + +++K++ LDEADA+T DAQ
Sbjct: 62 EFFGDSWQTNFREMNASDERGIDVVRNQIKEFARTSPLAGATFKILFLDEADALTTDAQA 121
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR L
Sbjct: 122 ALRRTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEETRRIAAAEGLT 181
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
VT AI+ ++ GDMRK +N LQ AA D ++E+T++ EI
Sbjct: 182 VTEGALDAIVYVASGDMRKAINALQGAAILRTD-IDEETIFEITATARPEEI-------- 232
Query: 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTK 333
+E +DL I DE E L G I C R L +
Sbjct: 233 DELLDL--SIGGRFDEAEQALLELTHVRGIAPNELINQCYRALVQR 276
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF + CNY SKI IQSRC +RF PLD ++ + E + VT
Sbjct: 127 METYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEETRRIAAAEGLTVTEGA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDEL------ 114
AI+ ++ GDMRK +N LQ AA D ++E+TIF + + RP +DEL
Sbjct: 187 LDAIVYVASGDMRKAINALQGAAILRTD-IDEETIFEITAT----ARPEEIDELLDLSIG 241
Query: 115 ------------VSHQDIISTIE-------------IPESMLVDLVLKMSDIEYRLAAGT 149
++H I+ E I ++ V L+ + + ++RL+ G
Sbjct: 242 GRFDEAEQALLELTHVRGIAPNELINQCYRALVQRDIDRTLKVKLIDALGETDFRLSEGA 301
Query: 150 SEKIQLSALIAAF 162
S IQ+ AL+A F
Sbjct: 302 SSDIQMEALLARF 314
>gi|452825574|gb|EME32570.1| replication factor C [Galdieria sulphuraria]
Length = 354
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 107/177 (60%), Gaps = 13/177 (7%)
Query: 278 EITNILRWLLNESMDLCYK------INRFIDENELPHLLFYGPPGTGKTTTILACARKLY 331
E+ + ++ N+ DL Y+ ++ + LPH LFYGPPGTGKT+ LA ++L+
Sbjct: 8 ELPWVEKYRPNKIKDLVYQQEAAQLLHNCLTSGNLPHCLFYGPPGTGKTSAALAFCKELF 67
Query: 332 TKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKS-------SYKLIILDEADAMT 384
+ VLELNASD+RGI +VR++I +FA +K+IILDEADA+T
Sbjct: 68 PPEIYKDRVLELNASDERGIKVVREKIKRFAQGSVSSAQFEGFPCPPFKIIILDEADAIT 127
Query: 385 NDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
DAQ ALRR +E+F+ RF ++CNY++++ + SRC +FRF L L + RL Y
Sbjct: 128 PDAQTALRRTMEQFSKITRFFLLCNYVTRVIDPLASRCAKFRFRSLPMQLQVDRLRY 184
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 71/135 (52%), Gaps = 19/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
VEKYRP+ + +LV Q+ + L+ L ++ + L G + SA +A
Sbjct: 12 VEKYRPNKIKDLVYQQE--------AAQLLHNCLTSGNLPHCLFYGPPGTGKTSAALAFC 63
Query: 161 --AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS-------SYKLIILDEA 211
F K VLELNASD+RGI +VR++I +FA +K+IILDEA
Sbjct: 64 KELFPPEIYKDRVLELNASDERGIKVVREKIKRFAQGSVSSAQFEGFPCPPFKIIILDEA 123
Query: 212 DAMTNDAQNALRRKL 226
DA+T DAQ ALRR +
Sbjct: 124 DAITPDAQTALRRTM 138
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 61/112 (54%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ RF ++CNY++++ + SRC +FRF L L + RL Y+++QE + V+ D
Sbjct: 138 MEQFSKITRFFLLCNYVTRVIDPLASRCAKFRFRSLPMQLQVDRLRYIVDQEGIMVSDDI 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLD 112
+ + +GD+R+ + L+SA D I + RV + S +D
Sbjct: 198 LQTLTSCCNGDLRRAIMTLESAYCLARGSNITDEIINSVTWRVPDHVISQID 249
>gi|88602285|ref|YP_502463.1| replication factor C small subunit [Methanospirillum hungatei JF-1]
gi|110287812|sp|Q2FQT9.1|RFCS_METHJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|88187747|gb|ABD40744.1| replication factor C small subunit [Methanospirillum hungatei JF-1]
Length = 323
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 93/139 (66%), Gaps = 1/139 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++ + E+PHLLF G GTGKTT +A AR+ + + + ELNASD+RGI
Sbjct: 25 EIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALAREFFGE-DWQMNFRELNASDERGI 83
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI QFA T S++K++ LDEADA+T DAQ+ALRR +E + RF + CNY
Sbjct: 84 DVVRNQIKQFARTSPFGGSTFKILFLDEADALTTDAQSALRRTMETYAQTCRFILSCNYS 143
Query: 412 SKIPPAIQSRCTRFRFGPL 430
+KI IQSRC +RF PL
Sbjct: 144 AKIIDPIQSRCAIYRFRPL 162
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 106/236 (44%), Gaps = 63/236 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLK--MSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP L++++ Q+II L V K M + + AGT + AL
Sbjct: 9 IEKYRPRVLEDIIGQQEIIER-------LRSYVAKREMPHLLFTGNAGTGKTTAAVALAR 61
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
F ++ ELNASD+RGI +VR+QI QFA T S++K++ LDEADA+T DAQ+
Sbjct: 62 EFFGEDWQMNFRELNASDERGIDVVRNQIKQFARTSPFGGSTFKILFLDEADALTTDAQS 121
Query: 221 ALRRKL---------------------PVT---------PDGKKAIIDL----------- 239
ALRR + P+ P G++A+ ++
Sbjct: 122 ALRRTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSEMVKRISADQNLT 181
Query: 240 ------------SDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
+ GDMRK +N LQ AA D ++ D ++ EI +++
Sbjct: 182 VTEEVIDAIFYVAQGDMRKAINALQGAAILGRD-ISPDMIFAITATARPEEIDDLI 236
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF + CNY +KI IQSRC +RF PL + + + + + VT +
Sbjct: 127 METYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSEMVKRISADQNLTVTEEV 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDEL------ 114
AI ++ GDMRK +N LQ AA D ++ D IF + + RP +D+L
Sbjct: 187 IDAIFYVAQGDMRKAINALQGAAILGRD-ISPDMIFAITAT----ARPEEIDDLIDLSLA 241
Query: 115 ------------------VSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
++ Q++IS + ++PE++ V L+ + + ++RL+ G
Sbjct: 242 GNFLGAGSSLQALLHDRGIAPQELISQLYRAVVKRDLPEAVKVRLIDSLGETDFRLSEGA 301
Query: 150 SEKIQLSALIAAF 162
IQ+ +LIA F
Sbjct: 302 GSDIQMQSLIAKF 314
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 41/64 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+Q + ++G+A ++++++ V + ++PE++ V L+ + + ++RL+ G IQ+ +L
Sbjct: 251 LQALLHDRGIAPQELISQLYRAVVKRDLPEAVKVRLIDSLGETDFRLSEGAGSDIQMQSL 310
Query: 516 IAAF 519
IA F
Sbjct: 311 IAKF 314
>gi|253745639|gb|EET01440.1| Replication factor C, sub 2 [Giardia intestinalis ATCC 50581]
Length = 351
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 112/193 (58%), Gaps = 22/193 (11%)
Query: 298 NRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQ 357
R I+ +PH+L YGP GTGKTT + A + + + A V E NAS DRGI IVR++
Sbjct: 28 KRCIESGNMPHMLLYGPAGTGKTTLVHAMMHEFFGPRFWRARVNEFNASTDRGIKIVRER 87
Query: 358 IFQFAST---------KTMHKSS-YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII 407
I A T K ++ +++I+LDEADA+T ++Q ALRRIIE ++ RFCI+
Sbjct: 88 IKSIARTVIAVAPEDVKALYPCPDFQVIVLDEADALTRESQAALRRIIEDYSETTRFCIL 147
Query: 408 CNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIK---IEKG 464
CNY S+I I SRC RF F PL +LI+ RL I Y ++ +++ +
Sbjct: 148 CNYPSQIIAPIVSRCARFAFSPLPQTLIIDRLT---------AICYAEMHQLRNANEQLS 198
Query: 465 LALTDILTEISLL 477
L +D L+E+++L
Sbjct: 199 LLASDALSEVAIL 211
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 65/151 (43%), Gaps = 31/151 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVN----- 55
IE ++ RFCI+CNY S+I I SRC RF F PL +LI+ RL + E
Sbjct: 135 IEDYSETTRFCILCNYPSQIIAPIVSRCARFAFSPLPQTLIIDRLTAICYAEMHQLRNAN 194
Query: 56 -----VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPST 110
+ D + LS GDMR + +LQ T S E+ P
Sbjct: 195 EQLSLLASDALSEVAILSQGDMRAAITLLQ-------------TTVQFCQSMGEELSPEH 241
Query: 111 LDELVSHQDIISTIEIPESMLVDLVLKMSDI 141
+ L +IP+ ++ L+ KM+D+
Sbjct: 242 VRLLAG--------KIPDELIASLIEKMTDV 264
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 69/140 (49%), Gaps = 32/140 (22%)
Query: 104 EKYRPSTLDELVSHQD--------IISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
EK+RP LD +V HQD I + +P +L AGT + +
Sbjct: 7 EKHRPLALDRIV-HQDHAVRAAKRCIESGNMPHMLLYG------------PAGTGKTTLV 53
Query: 156 SALIAAFNSAR-DKLEVLELNASDDRGIGIVRDQIFQFAST---------KTMHKSS-YK 204
A++ F R + V E NAS DRGI IVR++I A T K ++ ++
Sbjct: 54 HAMMHEFFGPRFWRARVNEFNASTDRGIKIVRERIKSIARTVIAVAPEDVKALYPCPDFQ 113
Query: 205 LIILDEADAMTNDAQNALRR 224
+I+LDEADA+T ++Q ALRR
Sbjct: 114 VIVLDEADALTRESQAALRR 133
>gi|386002033|ref|YP_005920332.1| replication factor C small subunit [Methanosaeta harundinacea 6Ac]
gi|357210089|gb|AET64709.1| Replication factor C small subunit [Methanosaeta harundinacea 6Ac]
Length = 368
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 96/148 (64%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++ +PHLLF GPPG GKT ++ R+L+ + ++ +ELNASD+RGI
Sbjct: 68 EIVKRLKSYVRSRNVPHLLFSGPPGVGKTAAAISMVRELFGE-EWRGNFIELNASDERGI 126
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR ++ FA + + +K+I LDEADA+TNDAQ+ALRR +E++++ RF + CNY
Sbjct: 127 DVVRHKVKDFARIAPLGNAEFKVIFLDEADALTNDAQSALRRTMERYSSICRFVLSCNYS 186
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI IQSRC +RF L + R+
Sbjct: 187 SKIIEPIQSRCAVYRFRSLSEEAVSERM 214
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 105/193 (54%), Gaps = 32/193 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E++++ RF + CNY SKI IQSRC +RF L + R+ + E E V VTP+G
Sbjct: 170 MERYSSICRFVLSCNYSSKIIEPIQSRCAVYRFRSLSEEAVSERMKTIAEAEGVKVTPEG 229
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLV-SRVEKYR------------ 107
+AI+ ++ GDMRK +N LQ AA+ + V E+TI+ + +R E+ R
Sbjct: 230 MRAIVYVARGDMRKAINALQ-AASLMEESVTEETIYQITATARPEQIRDLMKTALAGNFT 288
Query: 108 --PSTLDEL-----VSHQDIISTI-----------EIPESMLVDLVLKMSDIEYRLAAGT 149
S LD+L +S +D+I I E+ LV L+ ++ +I++R+ G
Sbjct: 289 QARSLLDDLLLVQGLSGEDVIIQIHRQTLSLLDSHELSGPTLVRLMDRIGEIDFRMTEGA 348
Query: 150 SEKIQLSALIAAF 162
+E+IQL AL+A F
Sbjct: 349 NERIQLEALLAYF 361
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 111/238 (46%), Gaps = 65/238 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP +LD++V ++I+ ++ ++ ++ + L +G + +A I+
Sbjct: 52 IEKYRPMSLDDVVGQEEIVKRLKS--------YVRSRNVPHLLFSGPPGVGKTAAAISMV 103
Query: 163 N---SARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
+ +ELNASD+RGI +VR ++ FA + + +K+I LDEADA+TNDAQ
Sbjct: 104 RELFGEEWRGNFIELNASDERGIDVVRHKVKDFARIAPLGNAEFKVIFLDEADALTNDAQ 163
Query: 220 NALRRKL---------------------PV------------------------------ 228
+ALRR + P+
Sbjct: 164 SALRRTMERYSSICRFVLSCNYSSKIIEPIQSRCAVYRFRSLSEEAVSERMKTIAEAEGV 223
Query: 229 --TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
TP+G +AI+ ++ GDMRK +N LQ AA+ + V E+T+Y +I ++++
Sbjct: 224 KVTPEGMRAIVYVARGDMRKAINALQ-AASLMEESVTEETIYQITATARPEQIRDLMK 280
>gi|308159615|gb|EFO62141.1| Replication factor C, sub 2 [Giardia lamblia P15]
Length = 351
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 94/153 (61%), Gaps = 10/153 (6%)
Query: 298 NRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQ 357
R I+ +PH+L YGP GTGKTT I A + + + A V E NAS DRGI IVR++
Sbjct: 28 KRCIESGNMPHMLLYGPAGTGKTTLIHAMMHEFFGPRFWRARVNEFNASTDRGIKIVRER 87
Query: 358 IFQFAST---------KTMHKSS-YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII 407
I A T K ++ +++IILDEADA+T ++Q ALRRIIE F+ RFCII
Sbjct: 88 IKSIARTVIAVAPDDVKAVYPCPDFQVIILDEADALTRESQAALRRIIEDFSETTRFCII 147
Query: 408 CNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
CNY S+I I SRC RF F L SLI+ RL+
Sbjct: 148 CNYPSQIIAPIVSRCARFAFSSLPQSLIIDRLE 180
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE F+ RFCIICNY S+I I SRC RF F L SLI+ RL+ + E +
Sbjct: 135 IEDFSETTRFCIICNYPSQIIAPIVSRCARFAFSSLPQSLIIDRLEAICYAEMHQLRNAN 194
Query: 61 KK----------AIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPST 110
+K + LS GDMR + +LQ+ ++ +
Sbjct: 195 EKLSSSASEALGEVATLSQGDMRAAITLLQATV---------------------QFCQNM 233
Query: 111 LDELVSHQDIISTIEIPESMLVDLVLKMSDI 141
+EL + +IP+ ++ L+ KM+D+
Sbjct: 234 GEELSPKHVYLLAGKIPDELIASLIEKMTDV 264
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 69/140 (49%), Gaps = 32/140 (22%)
Query: 104 EKYRPSTLDELVSHQD--------IISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
EK+RP +LD V HQD I + +P +L AGT + +
Sbjct: 7 EKHRPMSLDR-VMHQDHAVRAAKRCIESGNMPHMLLYG------------PAGTGKTTLI 53
Query: 156 SALIAAFNSAR-DKLEVLELNASDDRGIGIVRDQIFQFAST---------KTMHKSS-YK 204
A++ F R + V E NAS DRGI IVR++I A T K ++ ++
Sbjct: 54 HAMMHEFFGPRFWRARVNEFNASTDRGIKIVRERIKSIARTVIAVAPDDVKAVYPCPDFQ 113
Query: 205 LIILDEADAMTNDAQNALRR 224
+IILDEADA+T ++Q ALRR
Sbjct: 114 VIILDEADALTRESQAALRR 133
>gi|397621040|gb|EJK66073.1| hypothetical protein THAOC_13022 [Thalassiosira oceanica]
Length = 363
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 97/172 (56%), Gaps = 33/172 (19%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
++ N LPHLLFYGPPG G+ + C R+LY +Q VLELNASD+RGI +VRD+I
Sbjct: 36 VETNRLPHLLFYGPPG-GRFHSTHKC-RQLYEPSQLKRRVLELNASDERGISVVRDKIKH 93
Query: 361 FAS-------------------------------TKTMHKSSYKLIILDEADAMTNDAQN 389
FAS +K +K+IILDEAD +T DAQ
Sbjct: 94 FASLAIGSSSGGGSKKNFFAKKGDGEAMDAEEAPSKKYPNPPFKIIILDEADTVTRDAQA 153
Query: 390 ALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ALRR+IE ++ RF +ICNY+++I + SRC +FRF PL + + R+ Y
Sbjct: 154 ALRRVIEAYSKVTRFVLICNYVTRIIEPLASRCAKFRFAPLPEASMKERIMY 205
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RF +ICNY+++I + SRC +FRF PL + + R+ Y+ +QE+ + +
Sbjct: 159 IEAYSKVTRFVLICNYVTRIIEPLASRCAKFRFAPLPEASMKERIMYISKQEQCHFEDEK 218
Query: 61 KKAIID----LSDGDMRKVLNILQSA 82
+ +ID LS GDMR+ + LQSA
Sbjct: 219 EAEVIDEILTLSQGDMRRAVTTLQSA 244
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 74/156 (47%), Gaps = 43/156 (27%)
Query: 103 VEKYRPSTLDELVSHQ-DIISTI--EIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
VEKYRP +L++ VSHQ +IIST+ + + L L+ Y G +
Sbjct: 11 VEKYRPRSLED-VSHQTEIISTLTNAVETNRLPHLLF------YGPPGGRFHSTHKCRQL 63
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFAS------------------------- 194
+ ++ K VLELNASD+RGI +VRD+I FAS
Sbjct: 64 --YEPSQLKRRVLELNASDERGISVVRDKIKHFASLAIGSSSGGGSKKNFFAKKGDGEAM 121
Query: 195 ------TKTMHKSSYKLIILDEADAMTNDAQNALRR 224
+K +K+IILDEAD +T DAQ ALRR
Sbjct: 122 DAEEAPSKKYPNPPFKIIILDEADTVTRDAQAALRR 157
>gi|300123151|emb|CBK24424.2| unnamed protein product [Blastocystis hominis]
Length = 314
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/139 (49%), Positives = 95/139 (68%), Gaps = 2/139 (1%)
Query: 302 DENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQF 361
+ LPH+L GPPGTGKTT++L A + A + V+ELNASDDRGI +VR++I F
Sbjct: 32 ETGNLPHILLAGPPGTGKTTSMLCLAHAMLGDA-YKTAVIELNASDDRGIDVVREKIKLF 90
Query: 362 ASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQS 420
A +K ++ + S+KL++LDEAD+MT AQ ALRRI+E +++ RF ++CN SKI IQS
Sbjct: 91 AQSKVSLPEGSHKLVLLDEADSMTPAAQQALRRIMELYSSTTRFALVCNISSKIIEPIQS 150
Query: 421 RCTRFRFGPLDSSLIMSRL 439
RC RF L + I+ RL
Sbjct: 151 RCAILRFNRLKDTEILDRL 169
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 112/247 (45%), Gaps = 68/247 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG---TSEKIQLSALI 159
+EK+RP L+++V +++ I +++ + + ++ + L AG T + + L
Sbjct: 6 IEKHRPQCLEDIVGNEETIKRMKV--------ITETGNLPHILLAGPPGTGKTTSMLCLA 57
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDA 218
A K V+ELNASDDRGI +VR++I FA +K ++ + S+KL++LDEAD+MT A
Sbjct: 58 HAMLGDAYKTAVIELNASDDRGIDVVREKIKLFAQSKVSLPEGSHKLVLLDEADSMTPAA 117
Query: 219 QNALRR-----------------------------------------------------K 225
Q ALRR K
Sbjct: 118 QQALRRIMELYSSTTRFALVCNISSKIIEPIQSRCAILRFNRLKDTEILDRLLHICEEEK 177
Query: 226 LPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHA-DEVNEDTVYNSVGYPTKTEITNILR 284
+ T DG A++ +DGD+R +N LQ AT + + VNE+ V P I++
Sbjct: 178 ITYTNDGLSALLFCADGDLRVAVNSLQ--ATFYGFNVVNEENVIKVCDQPPPVVAKQIVQ 235
Query: 285 WLLNESM 291
+++ M
Sbjct: 236 CCVSKDM 242
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 29/187 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +++ RF ++CN SKI IQSRC RF L + I+ RL ++ E+EK+ T DG
Sbjct: 125 MELYSSTTRFALVCNISSKIIEPIQSRCAILRFNRLKDTEILDRLLHICEEEKITYTNDG 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-DEVNEDTIFTL---------------LVSRVE 104
A++ +DGD+R +N LQ AT + + VNE+ + + VS+
Sbjct: 185 LSALLFCADGDLRVAVNSLQ--ATFYGFNVVNEENVIKVCDQPPPVVAKQIVQCCVSKDM 242
Query: 105 KYRPSTLDEL----VSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
S + +L S DI+ TI ++ E + ++ + ++ + R+A G + +
Sbjct: 243 VGARSGMTQLWNLGYSSSDIVGTIFKVTKDADLTEKLKLEFLKEIGICQLRIAEGATTLL 302
Query: 154 QLSALIA 160
QL L+A
Sbjct: 303 QLLGLVA 309
>gi|159115639|ref|XP_001708042.1| Replication factor C, sub 2 [Giardia lamblia ATCC 50803]
gi|157436151|gb|EDO80368.1| Replication factor C, sub 2 [Giardia lamblia ATCC 50803]
Length = 351
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 93/153 (60%), Gaps = 10/153 (6%)
Query: 298 NRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQ 357
R I+ +PH+L YGP GTGKTT I A + + + A V E NAS DRGI IVR++
Sbjct: 28 KRCIESGNMPHMLLYGPAGTGKTTLIHAMMHEFFGPRFWRARVSEFNASTDRGIKIVRER 87
Query: 358 IFQFAST---------KTMHKSS-YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII 407
I A T K ++ +++IILDEADA+T ++Q ALRRIIE F+ RFCII
Sbjct: 88 IKSIARTVIAVAPDDVKAVYPCPDFQVIILDEADALTRESQAALRRIIEDFSETTRFCII 147
Query: 408 CNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
CNY S+I I SRC RF F L LI+ RL+
Sbjct: 148 CNYPSQIIAPIVSRCARFAFSSLPRPLIIDRLE 180
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE F+ RFCIICNY S+I I SRC RF F L LI+ RL+ + E +
Sbjct: 135 IEDFSETTRFCIICNYPSQIIAPIVSRCARFAFSSLPRPLIIDRLESICYAEMHQLRNAN 194
Query: 61 KK----------AIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPST 110
+K + LS GDMR + +LQ AT + E E+ P
Sbjct: 195 EKLSSSASEALGEVATLSQGDMRAAITLLQ--ATVQFCQNME-----------EELSPKH 241
Query: 111 LDELVSHQDIISTIEIPESMLVDLVLKMSDI 141
+ L +IP+ ++ L+ KM+D+
Sbjct: 242 VHLLAG--------KIPDELIASLIEKMTDV 264
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 69/140 (49%), Gaps = 32/140 (22%)
Query: 104 EKYRPSTLDELVSHQD--------IISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
EK+RP LD ++ HQD I + +P +L AGT + +
Sbjct: 7 EKHRPLLLDRIM-HQDHAVRAAKRCIESGNMPHMLLYG------------PAGTGKTTLI 53
Query: 156 SALIAAFNSAR-DKLEVLELNASDDRGIGIVRDQIFQFAST---------KTMHKSS-YK 204
A++ F R + V E NAS DRGI IVR++I A T K ++ ++
Sbjct: 54 HAMMHEFFGPRFWRARVSEFNASTDRGIKIVRERIKSIARTVIAVAPDDVKAVYPCPDFQ 113
Query: 205 LIILDEADAMTNDAQNALRR 224
+IILDEADA+T ++Q ALRR
Sbjct: 114 VIILDEADALTRESQAALRR 133
>gi|55926133|ref|NP_446238.1| replication factor C subunit 2 [Rattus norvegicus]
gi|81884071|sp|Q641W4.1|RFC2_RAT RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 subunit C2
gi|51980598|gb|AAH82110.1| Replication factor C (activator 1) 2 [Rattus norvegicus]
gi|149063102|gb|EDM13425.1| replication factor C (activator 1) 2, isoform CRA_b [Rattus
norvegicus]
Length = 349
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 108/177 (61%), Gaps = 12/177 (6%)
Query: 274 PTKTEITNILRWL-------LNE---SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P+KT L W+ LNE + D ++ F E +P+++ GPPGTGKTT+I
Sbjct: 22 PSKTTGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSI 81
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADA 382
L AR L A +A VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+
Sbjct: 82 LCLARALLGPALKDA-VLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADS 140
Query: 383 MTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
MT+ AQ ALRR +E ++ RF + CN KI IQSRC R+ L + ++SRL
Sbjct: 141 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRL 197
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 120/267 (44%), Gaps = 72/267 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 34 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 86
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 87 ALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 146
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR K+
Sbjct: 147 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKV 206
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P T DG +AII + GDMR+ LN LQS + +N + V+ P + +++
Sbjct: 207 PYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFG-YINSENVFKVCDEPHPLLVKEMIQHC 265
Query: 287 LNESMDLCYKINRFIDENELPHLLFYG 313
++ ++D YKI L HL G
Sbjct: 266 VDANIDEAYKI--------LAHLWHLG 284
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + ++SRL VIE+EKV T DG
Sbjct: 153 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPYTDDG 212
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 213 LEAIIFTAQGDMRQALNNLQSTFSGFG-YINSENVFKV----CDEPHPLLVKEMIQHCVD 267
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+D+I T + E + ++ + ++ ++A G +
Sbjct: 268 ANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVN 327
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 328 SLLQMAGLLA 337
>gi|219852692|ref|YP_002467124.1| replication factor C small subunit [Methanosphaerula palustris
E1-9c]
gi|219546951|gb|ACL17401.1| Replication factor C [Methanosphaerula palustris E1-9c]
Length = 326
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 88/131 (67%), Gaps = 1/131 (0%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
++ LPHLLF G G GKTT +A AR+ + +A ++ E+NASD+RGI +VR+QI
Sbjct: 34 YVKGRSLPHLLFTGSAGIGKTTAAVALAREFFGEA-WHINFREMNASDERGIDVVRNQIK 92
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
QFA T + + +K++ LDEADA+T DAQ ALRR +E ++ RF + CNY SKI IQ
Sbjct: 93 QFARTSPLEGAEFKILFLDEADALTTDAQAALRRTMETYSRGCRFILSCNYSSKIIDPIQ 152
Query: 420 SRCTRFRFGPL 430
SRC +RF PL
Sbjct: 153 SRCAIYRFRPL 163
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 106/239 (44%), Gaps = 61/239 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLK-MSDIEYRLAAGTSEKIQLSALIAA 161
+E+YRP+ L DI+ EI E ++ + + + + + +AG + AL
Sbjct: 10 IERYRPTRL------ADIVGQDEITERLISYVKGRSLPHLLFTGSAGIGKTTAAVALARE 63
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
F + E+NASD+RGI +VR+QI QFA T + + +K++ LDEADA+T DAQ A
Sbjct: 64 FFGEAWHINFREMNASDERGIDVVRNQIKQFARTSPLEGAEFKILFLDEADALTTDAQAA 123
Query: 222 LRRKL---------------------PV-------------------------------- 228
LRR + P+
Sbjct: 124 LRRTMETYSRGCRFILSCNYSSKIIDPIQSRCAIYRFRPLTPEAISEEIGKIAGKEGITV 183
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
TPD +AI+ ++ GDMRK +N LQ A+ + ++++ VY EI +L +L
Sbjct: 184 TPDAIEAIVYIAQGDMRKAINALQGASIV-SKSIDQEMVYAITSSARPDEIEELLGLIL 241
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 36/191 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CNY SKI IQSRC +RF PL I + + +E + VTPD
Sbjct: 128 METYSRGCRFILSCNYSSKIIDPIQSRCAIYRFRPLTPEAISEEIGKIAGKEGITVTPDA 187
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVS---- 116
+AI+ ++ GDMRK +N LQ A+ + ++++ ++ + S RP ++EL+
Sbjct: 188 IEAIVYIAQGDMRKAINALQGASIV-SKSIDQEMVYAITSS----ARPDEIEELLGLILV 242
Query: 117 --------------HQDIISTIEI-------------PESMLVDLVLKMSDIEYRLAAGT 149
H I+ E+ + V L+ + + ++RL+ G
Sbjct: 243 GDFEGAEAVLLALMHTRGIAPAELLGQVYRALSGRSMERELKVALIGHLGETDFRLSEGA 302
Query: 150 SEKIQLSALIA 160
S +Q+ AL+A
Sbjct: 303 SPDLQMEALLA 313
>gi|116753581|ref|YP_842699.1| replication factor C small subunit [Methanosaeta thermophila PT]
gi|116665032|gb|ABK14059.1| replication factor C small subunit [Methanosaeta thermophila PT]
Length = 305
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++ LPHLLF GPPG GKT ++ R+++ + + + ELNASD+RGI
Sbjct: 5 EIVRRLKSYVATRNLPHLLFSGPPGVGKTAAAISIVREIFGEGWRDNFI-ELNASDERGI 63
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR ++ FA + + +K+I LDEADA+T+DAQ+ALRR +E+++ RF + CNY
Sbjct: 64 DVVRTKVKDFARMAPLGGAEFKVIFLDEADALTSDAQSALRRTMERYSATCRFILSCNYS 123
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI IQSRC +RF L I R+ Y
Sbjct: 124 SKIIEPIQSRCAVYRFRALTPDAIEKRIRY 153
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 108/187 (57%), Gaps = 28/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RF + CNY SKI IQSRC +RF L I R+ Y+ EQE V VT DG
Sbjct: 107 MERYSATCRFILSCNYSSKIIEPIQSRCAVYRFRALTPDAIEKRIRYIAEQEGVEVTEDG 166
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-VSRVEKYR------------ 107
+AI ++ GDMRK +N LQ+AA +D+V+ +TI+ + ++R E+ R
Sbjct: 167 IEAINYVARGDMRKAINALQAAALI-SDKVDMNTIYQITSMARPEQIRNLIKMAISGDFA 225
Query: 108 --PSTLDEL-----VSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ LD+L +S QD++ I ++P++ V ++ ++ +I++R+ G +E+I
Sbjct: 226 GARNELDDLLLVQGLSGQDVVVQIHREMLDLDVPDADKVRMINRIGEIDFRITEGANERI 285
Query: 154 QLSALIA 160
QL ALIA
Sbjct: 286 QLEALIA 292
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 54/170 (31%)
Query: 172 LELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRKL----- 226
+ELNASD+RGI +VR ++ FA + + +K+I LDEADA+T+DAQ+ALRR +
Sbjct: 53 IELNASDERGIDVVRTKVKDFARMAPLGGAEFKVIFLDEADALTSDAQSALRRTMERYSA 112
Query: 227 ----------------PV--------------------------------TPDGKKAIID 238
P+ T DG +AI
Sbjct: 113 TCRFILSCNYSSKIIEPIQSRCAVYRFRALTPDAIEKRIRYIAEQEGVEVTEDGIEAINY 172
Query: 239 LSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
++ GDMRK +N LQ+AA +D+V+ +T+Y +I N+++ ++
Sbjct: 173 VARGDMRKAINALQAAALI-SDKVDMNTIYQITSMARPEQIRNLIKMAIS 221
>gi|432330756|ref|YP_007248899.1| DNA polymerase III, gamma/tau subunit [Methanoregula formicicum
SMSP]
gi|432137465|gb|AGB02392.1| DNA polymerase III, gamma/tau subunit [Methanoregula formicicum
SMSP]
Length = 322
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 91/139 (65%), Gaps = 1/139 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ +++ ++ LPHLLF G G GKTT + AR+ + + + ELNASD+RGI
Sbjct: 25 EIVERLSSYVRSGNLPHLLFTGSAGVGKTTAAVTLAREFF-RDSWQMNFRELNASDERGI 83
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI QFA T + ++++K++ LDEADA+T DAQ ALRR +E + RF + CNY
Sbjct: 84 DVVRNQIKQFARTTPLGEATFKILFLDEADALTTDAQAALRRTMESYAQTCRFILSCNYS 143
Query: 412 SKIPPAIQSRCTRFRFGPL 430
SKI IQSRC +RF PL
Sbjct: 144 SKIIDPIQSRCAIYRFKPL 162
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 113/270 (41%), Gaps = 69/270 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP L ++V +I+ + + L L+ S AG + L
Sbjct: 9 IEKYRPQKLADIVGQDEIVERLSSYVRSGNLPHLLFTGS-------AGVGKTTAAVTLAR 61
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
F ++ ELNASD+RGI +VR+QI QFA T + ++++K++ LDEADA+T DAQ
Sbjct: 62 EFFRDSWQMNFRELNASDERGIDVVRNQIKQFARTTPLGEATFKILFLDEADALTTDAQA 121
Query: 221 ALRRKL---------------------------------PVTPDGKK------------- 234
ALRR + P+ P+ +
Sbjct: 122 ALRRTMESYAQTCRFILSCNYSSKIIDPIQSRCAIYRFKPLGPEAVREEVRRIASREGLT 181
Query: 235 -------AIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
AI+ ++ GDMRK +N LQ AA + ++E VY+ EI +L L
Sbjct: 182 ITDGAMDAIVYIAQGDMRKAINALQGAAIINP-AIDEKRVYSITSTARPEEIDELLSLSL 240
Query: 288 NESMDLCYKI------NRFIDENELPHLLF 311
D + R I NEL + ++
Sbjct: 241 TGDFDGAESLLAQLLHERGIAPNELINQMY 270
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 93/193 (48%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF + CNY SKI IQSRC +RF PL + + + +E + +T
Sbjct: 127 MESYAQTCRFILSCNYSSKIIDPIQSRCAIYRFKPLGPEAVREEVRRIASREGLTITDGA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVS---- 116
AI+ ++ GDMRK +N LQ AA + ++E ++++ RP +DEL+S
Sbjct: 187 MDAIVYIAQGDMRKAINALQGAAIINP-AIDEKRVYSI----TSTARPEEIDELLSLSLT 241
Query: 117 --------------HQ------DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
H+ ++I+ + E+P + V L+ + + ++RL+ G
Sbjct: 242 GDFDGAESLLAQLLHERGIAPNELINQMYRALLKREMPRELKVRLIDHLGESDFRLSEGA 301
Query: 150 SEKIQLSALIAAF 162
+ IQ+ AL+A F
Sbjct: 302 NSDIQMEALVARF 314
>gi|268325481|emb|CBH39069.1| replication factor C, small subunit [uncultured archaeon]
gi|268325789|emb|CBH39377.1| replication factor C, small subunit [uncultured archaeon]
Length = 322
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 92/145 (63%), Gaps = 1/145 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ ++ + LPHL+F GP G GKT +A AR+ Y + ELNASD+RGI +VR+
Sbjct: 29 LQSYVKKRNLPHLIFSGPAGVGKTAAAVAMAREFYDDT-WAENFTELNASDERGIEVVRN 87
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
I FA T + +++K+I LDEADA+T+ AQ+ALRR +E+++ RF + CNY SKI
Sbjct: 88 TIKNFARTMPIGDAAFKIIFLDEADALTDAAQSALRRTMERYSGTCRFILSCNYSSKIIE 147
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSRC+ +RF L I SR Y
Sbjct: 148 PIQSRCSVYRFKSLSYDAIASRAKY 172
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 98/188 (52%), Gaps = 27/188 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RF + CNY SKI IQSRC+ +RF L I SR Y+ + E + ++ D
Sbjct: 126 MERYSGTCRFILSCNYSSKIIEPIQSRCSVYRFKSLSYDAIASRAKYIADTEGLTLSEDA 185
Query: 61 KKAIIDLSDGDMRKVLNILQSA----------------ATAHADEVN---EDTIFTLLVS 101
+AI +S GDMR+ +N LQSA ATA DE+ E + +
Sbjct: 186 LRAINYVSMGDMRRAINALQSASVLSNEIKPEMIYEITATARPDEIEALIETAMAGEFLD 245
Query: 102 RVEKYRPSTLDELVSHQDIIST-------IEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
++K +D+ +S +I++ ++I V+L+ ++ + +YR+ G +E+IQ
Sbjct: 246 ALDKL-GVLIDKGISGDEILAQMHRLAIKMDISARQKVELMDRIGETDYRITEGANERIQ 304
Query: 155 LSALIAAF 162
L ALIA+
Sbjct: 305 LDALIASL 312
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 64/257 (24%)
Query: 104 EKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP L+E+ + II ++ + + L L+ + AG + A+
Sbjct: 9 EKYRPRKLEEVSGQEAIIRNLQSYVKKRNLPHLI-------FSGPAGVGKTAAAVAMARE 61
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
F ELNASD+RGI +VR+ I FA T + +++K+I LDEADA+T+ AQ+A
Sbjct: 62 FYDDTWAENFTELNASDERGIEVVRNTIKNFARTMPIGDAAFKIIFLDEADALTDAAQSA 121
Query: 222 LRR-----------------------------------------------------KLPV 228
LRR L +
Sbjct: 122 LRRTMERYSGTCRFILSCNYSSKIIEPIQSRCSVYRFKSLSYDAIASRAKYIADTEGLTL 181
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR-WLL 287
+ D +AI +S GDMR+ +N LQSA+ ++E+ + +Y EI ++ +
Sbjct: 182 SEDALRAINYVSMGDMRRAINALQSASVL-SNEIKPEMIYEITATARPDEIEALIETAMA 240
Query: 288 NESMDLCYKINRFIDEN 304
E +D K+ ID+
Sbjct: 241 GEFLDALDKLGVLIDKG 257
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 39/59 (66%)
Query: 461 IEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 519
I+KG++ +IL ++ L +++I V+L+ ++ + +YR+ G +E+IQL ALIA+
Sbjct: 254 IDKGISGDEILAQMHRLAIKMDISARQKVELMDRIGETDYRITEGANERIQLDALIASL 312
>gi|303390791|ref|XP_003073626.1| replication factor C [Encephalitozoon intestinalis ATCC 50506]
gi|303302773|gb|ADM12266.1| replication factor C [Encephalitozoon intestinalis ATCC 50506]
Length = 309
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 95/143 (66%), Gaps = 4/143 (2%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
++ ID ++PHLLF GPPGTGKTT ARKL + +LELNASD+RGI VR
Sbjct: 26 VSLIIDSKDMPHLLFAGPPGTGKTTCAKILARKLLPSKEG---LLELNASDERGIETVRT 82
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
I FA + + S+K+IILDEAD+MT AQ A+RR++E ++ RF +ICN L+KI
Sbjct: 83 TIKSFAQRR-IKDCSFKVIILDEADSMTTAAQQAMRRVMEVHSSECRFILICNTLTKIFE 141
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC RF +++S+I+ RL
Sbjct: 142 PIQSRCAILRFDRIENSMILERL 164
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 56/85 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF +ICN L+KI IQSRC RF +++S+I+ RL + + E + ++ +
Sbjct: 120 MEVHSSECRFILICNTLTKIFEPIQSRCAILRFDRIENSMILERLREISKDEGIKISKEA 179
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA 85
I++LSDGDMR+ LNILQ+ ++
Sbjct: 180 LDLIVELSDGDMRQSLNILQACISS 204
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 73/127 (57%), Gaps = 10/127 (7%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS-ALIAA 161
V KYRP+ + +++ +Q T+E LV L++ D+ + L AG + + A I A
Sbjct: 5 VNKYRPNEVQDVIGNQ---MTVE-----LVSLIIDSKDMPHLLFAGPPGTGKTTCAKILA 56
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
K +LELNASD+RGI VR I FA + + S+K+IILDEAD+MT AQ A
Sbjct: 57 RKLLPSKEGLLELNASDERGIETVRTTIKSFAQRR-IKDCSFKVIILDEADSMTTAAQQA 115
Query: 222 LRRKLPV 228
+RR + V
Sbjct: 116 MRRVMEV 122
>gi|196010307|ref|XP_002115018.1| hypothetical protein TRIADDRAFT_28707 [Trichoplax adhaerens]
gi|190582401|gb|EDV22474.1| hypothetical protein TRIADDRAFT_28707, partial [Trichoplax
adhaerens]
Length = 315
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/149 (48%), Positives = 98/149 (65%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E LP+++ GPPGTGKTT+IL AR+L + +A VLELNAS+DRGI
Sbjct: 17 DTISRLEVFAKEGNLPNIVIAGPPGTGKTTSILCIARQLLGTSMKDA-VLELNASNDRGI 75
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 76 DVVRNKIKMFAQKKVTLPLGKHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNT 135
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC RF L+ S I++RL
Sbjct: 136 SEKIIEPIQSRCAVLRFTRLNDSQILARL 164
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 117/270 (43%), Gaps = 74/270 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP LDE+V ++D IS +E+ E L ++V+ GT + + +
Sbjct: 1 IEKYRPKQLDEVVGNEDTISRLEVFAKEGNLPNIVIAG-------PPGTGKTTSILCIAR 53
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
K VLELNAS+DRGI +VR++I FA K T+ +K+IILDEAD+MT+ AQ
Sbjct: 54 QLLGTSMKDAVLELNASNDRGIDVVRNKIKMFAQKKVTLPLGKHKIIILDEADSMTDGAQ 113
Query: 220 NALRRKLPV--------------------------------------------------- 228
ALRR + +
Sbjct: 114 QALRRTMEIYSKTTRFALACNTSEKIIEPIQSRCAVLRFTRLNDSQILARLMEVCRQESV 173
Query: 229 --TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
T DG +A+I + GDMR+ LN LQS VN + V+ P I +++
Sbjct: 174 IATNDGLEAVIFTAQGDMRQALNNLQSTYAGFG-HVNSENVFKVCDEPHPLLIKQMIQAS 232
Query: 287 LNESMDLCYKINRFIDENELPHL--LFYGP 314
+ ++D YK+ L HL L Y P
Sbjct: 233 IECNIDEAYKV--------LSHLWQLGYSP 254
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC RF L+ S I++RL V QE V T DG
Sbjct: 120 MEIYSKTTRFALACNTSEKIIEPIQSRCAVLRFTRLNDSQILARLMEVCRQESVIATNDG 179
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
+A+I + GDMR+ LN LQS VN + +F +
Sbjct: 180 LEAVIFTAQGDMRQALNNLQSTYAGFG-HVNSENVFKV 216
>gi|11177922|ref|NP_064406.1| replication factor C subunit 2 [Mus musculus]
gi|23813636|sp|Q9WUK4.1|RFC2_MOUSE RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40
gi|4972952|gb|AAD34861.1|AF139987_4 replication factor C, 40kDa subunit [Mus musculus]
gi|9800515|gb|AAF99332.1|AF289664_3 RFC2 [Mus musculus]
gi|18606185|gb|AAH23028.1| Replication factor C (activator 1) 2 [Mus musculus]
gi|26344918|dbj|BAC36108.1| unnamed protein product [Mus musculus]
gi|68534875|gb|AAH99370.1| Replication factor C (activator 1) 2 [Mus musculus]
gi|74185767|dbj|BAE32762.1| unnamed protein product [Mus musculus]
gi|148687476|gb|EDL19423.1| replication factor C (activator 1) 2, isoform CRA_a [Mus musculus]
Length = 349
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 108/177 (61%), Gaps = 12/177 (6%)
Query: 274 PTKTEITNILRWL-------LNE---SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P+KT L W+ LNE + D ++ F E +P+++ GPPGTGKTT+I
Sbjct: 22 PSKTAGHYELPWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSI 81
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADA 382
L AR L A +A VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+
Sbjct: 82 LCLARALLGPALKDA-VLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADS 140
Query: 383 MTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
MT+ AQ ALRR +E ++ RF + CN KI IQSRC R+ L + +++RL
Sbjct: 141 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRL 197
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 120/267 (44%), Gaps = 72/267 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 34 VEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 86
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 87 ALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 146
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR K+
Sbjct: 147 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKV 206
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P T DG +AII + GDMR+ LN LQS + +N + V+ P + +++
Sbjct: 207 PYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFG-YINSENVFKVCDEPHPLLVKEMIQHC 265
Query: 287 LNESMDLCYKINRFIDENELPHLLFYG 313
++ ++D YKI L HL G
Sbjct: 266 VDANIDEAYKI--------LAHLWHLG 284
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + +++RL VIE+EKV T DG
Sbjct: 153 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDG 212
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 213 LEAIIFTAQGDMRQALNNLQSTFSGFG-YINSENVFKV----CDEPHPLLVKEMIQHCVD 267
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+D+I T + E + ++ + ++ ++A G +
Sbjct: 268 ANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVN 327
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 328 SLLQMAGLLA 337
>gi|70951019|ref|XP_744784.1| replication factor C, subunit 2 [Plasmodium chabaudi chabaudi]
gi|56524878|emb|CAH75042.1| replication factor C, subunit 2, putative [Plasmodium chabaudi
chabaudi]
Length = 330
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 99/151 (65%), Gaps = 10/151 (6%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
I +PHL+F+GPPGTGKT+ I A A +L+ K + VLELNASDDRGI +VR++I
Sbjct: 32 IKTKNMPHLIFHGPPGTGKTSAINALAHELFGKENISERVLELNASDDRGITVVREKIKA 91
Query: 361 F-----ASTKTMHKSS-----YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+ + K ++++ +KL++LDEAD MT DAQ+ALRRIIE ++ RF +ICNY
Sbjct: 92 YTRISISKNKINNETNEPLPPWKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNY 151
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ KI I SRC+ +RF + ++ +L Y
Sbjct: 152 IHKISDPIYSRCSCYRFQGIPLNIKKEKLLY 182
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 75/135 (55%), Gaps = 20/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD++V + IS ML +++ M + + GT + ++AL
Sbjct: 7 VEKYRPKKLDDIVHQTNAIS-------MLKEVIKTKNMPHLIFHGPPGTGKTSAINALAH 59
Query: 161 A-FNSARDKLEVLELNASDDRGIGIVRDQIFQF-----ASTKTMHKSS-----YKLIILD 209
F VLELNASDDRGI +VR++I + + K ++++ +KL++LD
Sbjct: 60 ELFGKENISERVLELNASDDRGITVVREKIKAYTRISISKNKINNETNEPLPPWKLVVLD 119
Query: 210 EADAMTNDAQNALRR 224
EAD MT DAQ+ALRR
Sbjct: 120 EADMMTEDAQSALRR 134
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 97/190 (51%), Gaps = 26/190 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RF +ICNY+ KI+ I SRC+ +RF + ++ +L Y+ E +N++ D
Sbjct: 136 IEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPLNIKKEKLLYICNNENINISDDA 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNE-----------DTIFTLLVS-RVEKYR- 107
II+ + GD+R+ +++LQ + + E D I ++ S +V+ ++
Sbjct: 196 LTKIIETTQGDLRRAVSVLQLCSCIDSKITVESVLDISGLPDNDIILKIVDSCKVKDFKI 255
Query: 108 -PSTLDELVSHQDIISTI------------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
T+ +++ +S I +I +S+ +++++S ++RL G ++ IQ
Sbjct: 256 LEKTIQDIIEDGFDVSYIFKALNEYFVMCQDINDSIKYQILMELSRHDFRLHNGATKYIQ 315
Query: 155 LSALIAAFNS 164
L + ++ +S
Sbjct: 316 LMSFASSVHS 325
>gi|391337930|ref|XP_003743317.1| PREDICTED: replication factor C subunit 2-like [Metaseiulus
occidentalis]
Length = 322
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F + +P+++ GPPG GKTTTIL C +L + F VLELNAS+DRGI +VR
Sbjct: 28 RLEVFSRQGNVPNIILCGPPGVGKTTTIL-CLARLLLGSSFREAVLELNASNDRGIDVVR 86
Query: 356 DQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
++I FA TK T+ +K+IILDEAD+MT AQ ALRR +E F+ RF + CN KI
Sbjct: 87 NKIKMFAQTKVTLPPGRHKIIILDEADSMTEGAQQALRRTMENFSKTTRFALACNTSDKI 146
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC RFG L + +++++
Sbjct: 147 IEPIQSRCAVIRFGKLSDAQVLAKI 171
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 77/130 (59%), Gaps = 10/130 (7%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 157
V VEKYRP E+V +++ ++ +E+ + + +++L G + I A
Sbjct: 5 VPWVEKYRPEKFTEIVGNEETVARLEVFSRQGNVPNIILCGPP-----GVGKTTTILCLA 59
Query: 158 LIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTN 216
+ +S R+ VLELNAS+DRGI +VR++I FA TK T+ +K+IILDEAD+MT
Sbjct: 60 RLLLGSSFREA--VLELNASNDRGIDVVRNKIKMFAQTKVTLPPGRHKIIILDEADSMTE 117
Query: 217 DAQNALRRKL 226
AQ ALRR +
Sbjct: 118 GAQQALRRTM 127
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ RF + CN KI IQSRC RFG L + +++++ + +E V+ DG
Sbjct: 127 MENFSKTTRFALACNTSDKIIEPIQSRCAVIRFGKLSDAQVLAKIIDICRKENVSYAEDG 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH 117
+A++ + GDMR+ + LQS VN +F + ++ P + E++ +
Sbjct: 187 LEALVYTAQGDMRQAIGNLQSTHVGFG-HVNGKNVFKV----CDEPHPLIIKEMIEY 238
>gi|82539183|ref|XP_724000.1| replication factor C, 40 kDa subunit [Plasmodium yoelii yoelii
17XNL]
gi|23478491|gb|EAA15565.1| replication factor C, 40 kDa subunit [Plasmodium yoelii yoelii]
Length = 330
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 94/151 (62%), Gaps = 10/151 (6%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
I +PHL+F+GPPGTGKT+ I A A +L+ K + VLELNASDDRGI +VR++I
Sbjct: 32 IKTKNMPHLIFHGPPGTGKTSAINALAHELFGKENISERVLELNASDDRGINVVREKIKA 91
Query: 361 FA----------STKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+ S +KL++LDEAD MT DAQ+ALRRIIE ++ RF +ICNY
Sbjct: 92 YTRISISKNKINSENNEPLPPWKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNY 151
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ KI I SRC+ +RF + ++ +L Y
Sbjct: 152 IHKISDPIYSRCSCYRFQGIPINIKKEKLLY 182
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 70/135 (51%), Gaps = 20/135 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD++V + IS ML +++ M + + GT + ++AL
Sbjct: 7 VEKYRPKKLDDIVHQTNAIS-------MLKEVIKTKNMPHLIFHGPPGTGKTSAINALAH 59
Query: 161 A-FNSARDKLEVLELNASDDRGIGIVRDQIFQFA----------STKTMHKSSYKLIILD 209
F VLELNASDDRGI +VR++I + S +KL++LD
Sbjct: 60 ELFGKENISERVLELNASDDRGINVVREKIKAYTRISISKNKINSENNEPLPPWKLVVLD 119
Query: 210 EADAMTNDAQNALRR 224
EAD MT DAQ+ALRR
Sbjct: 120 EADMMTEDAQSALRR 134
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 100/190 (52%), Gaps = 26/190 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RF +ICNY+ KI+ I SRC+ +RF + ++ +L Y+ + E ++++ +
Sbjct: 136 IEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKEKLLYICKNENIDISDNA 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA----DEV-------NEDTIFTLLVS-RVEKYR- 107
II+ + GD+R+ +++LQ + + D V + D I ++ S +++ ++
Sbjct: 196 LSKIIETTQGDLRRAVSVLQLCSCIDSKITVDSVLDVSGLPDNDVILKIVDSCKMKDFKI 255
Query: 108 -PSTLDELVSHQDIISTI------------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
T+ +++ +S I +I +S+ +++++S ++RL G ++ IQ
Sbjct: 256 LEKTVQDIIEDGFDVSYIFKSLNEYFVMCQDINDSIKYQILMELSRHDFRLHNGATKYIQ 315
Query: 155 LSALIAAFNS 164
L + ++ +S
Sbjct: 316 LMSFASSVHS 325
>gi|154151216|ref|YP_001404834.1| replication factor C small subunit [Methanoregula boonei 6A8]
gi|166225154|sp|A7I8Y0.1|RFCS_METB6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|153999768|gb|ABS56191.1| Replication factor C [Methanoregula boonei 6A8]
Length = 322
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 91/140 (65%), Gaps = 3/140 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKA-QFNAMVLELNASDDRG 350
D+ +++ ++ LPHLLF G G GKTT + AR+ + + Q N ELNASD+RG
Sbjct: 25 DIVERLSSYVKSGNLPHLLFTGSAGVGKTTAAVTLAREFFGDSWQMN--FRELNASDERG 82
Query: 351 IGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
I +VR+QI +FA T+ +++K++ LDEADA+T DAQ ALRR +E + RF + CNY
Sbjct: 83 IDVVRNQIKEFARTRPAGDAAFKILFLDEADALTTDAQAALRRTMESYAKTCRFILSCNY 142
Query: 411 LSKIPPAIQSRCTRFRFGPL 430
SKI IQSRC +RF PL
Sbjct: 143 SSKIIDPIQSRCAIYRFRPL 162
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 94/188 (50%), Gaps = 26/188 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF + CNY SKI IQSRC +RF PL + + + +E ++VTP+
Sbjct: 127 MESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAVKEEITRIAAREHLDVTPEA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAA----------------TAHADEVNEDTIFTL------ 98
A++ ++ GDMRK +N LQ AA A +E+ E +L
Sbjct: 187 MDAMVYIAQGDMRKAINALQGAAILSATIEAPMVYAITSNARPEEIGELLTLSLSGDFDG 246
Query: 99 ---LVSRVEKYRPSTLDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
L++R+ + R +EL++ ++ ++ + V+L+ + + ++RL+ G S IQ
Sbjct: 247 AEALLTRLLRERGIAPNELINQCYRALTKRDMDRVLKVELIDALGETDFRLSEGASSDIQ 306
Query: 155 LSALIAAF 162
+ ALIA F
Sbjct: 307 MEALIARF 314
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 101/245 (41%), Gaps = 63/245 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP+ L ++V DI+ + + L L+ S AG + L
Sbjct: 9 IEKYRPAKLADIVGQDDIVERLSSYVKSGNLPHLLFTGS-------AGVGKTTAAVTLAR 61
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
F ++ ELNASD+RGI +VR+QI +FA T+ +++K++ LDEADA+T DAQ
Sbjct: 62 EFFGDSWQMNFRELNASDERGIDVVRNQIKEFARTRPAGDAAFKILFLDEADALTTDAQA 121
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR L
Sbjct: 122 ALRRTMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAVKEEITRIAAREHLD 181
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
VTP+ A++ ++ GDMRK +N LQ AA A + VY EI +L L
Sbjct: 182 VTPEAMDAMVYIAQGDMRKAINALQGAAILSA-TIEAPMVYAITSNARPEEIGELLTLSL 240
Query: 288 NESMD 292
+ D
Sbjct: 241 SGDFD 245
>gi|301769425|ref|XP_002920130.1| PREDICTED: replication factor C subunit 2-like isoform 1
[Ailuropoda melanoleuca]
Length = 352
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 96/149 (64%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A F VLELNAS+DRGI
Sbjct: 53 DTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA-FKDAVLELNASNDRGI 111
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 112 DVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 171
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC R+ L + +++RL
Sbjct: 172 SDKIIEPIQSRCAVLRYTKLSDAQVLARL 200
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 120/267 (44%), Gaps = 72/267 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 89
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 90 ALLGPAFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 149
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR K+
Sbjct: 150 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKV 209
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P T DG +A+I + GDMR+ LN +QS + +N + V+ P + +++
Sbjct: 210 PYTDDGLEAVIFTAQGDMRQALNNVQSTFSGFGF-INSENVFKVCDEPHPLLVKEMVQHC 268
Query: 287 LNESMDLCYKINRFIDENELPHLLFYG 313
+N ++D YKI L HL G
Sbjct: 269 VNANVDEAYKI--------LAHLWHLG 287
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 91/190 (47%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + +++RL V+EQEKV T DG
Sbjct: 156 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDG 215
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+A+I + GDMR+ LN +QS + +N + +F + ++ P + E+V H
Sbjct: 216 LEAVIFTAQGDMRQALNNVQSTFSGFGF-INSENVFKV----CDEPHPLLVKEMVQHCVN 270
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+DII T ++ E + ++ + ++ ++A G +
Sbjct: 271 ANVDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVN 330
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 331 SLLQMAGLLA 340
>gi|198426342|ref|XP_002130063.1| PREDICTED: similar to Replication factor C (activator 1) 2, 40kDa
[Ciona intestinalis]
Length = 336
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 95/145 (65%), Gaps = 2/145 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F +E +P+++ GPPG GKTT+I+ AR + A ++ VLELNAS+DRGI +VR
Sbjct: 40 RLEVFANEGNVPNIIIAGPPGAGKTTSIMCLARTMLG-ASYDVAVLELNASNDRGIDVVR 98
Query: 356 DQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN KI
Sbjct: 99 NKIKMFAQKKVTLPKGKHKIIILDEADSMTSGAQQALRRTMEIYSKTTRFALACNQSDKI 158
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC R+ L I+SRL
Sbjct: 159 IEPIQSRCAVLRYSKLSDEQILSRL 183
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 10/129 (7%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+ L ++V ++ +S +E+ E + ++++ G + + L
Sbjct: 20 VEKYRPTKLSDVVGNEATVSRLEVFANEGNVPNIIIAGP-------PGAGKTTSIMCLAR 72
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A + VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 73 TMLGASYDVAVLELNASNDRGIDVVRNKIKMFAQKKVTLPKGKHKIIILDEADSMTSGAQ 132
Query: 220 NALRRKLPV 228
ALRR + +
Sbjct: 133 QALRRTMEI 141
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 27/186 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L I+SRL VI++E V G
Sbjct: 139 MEIYSKTTRFALACNQSDKIIEPIQSRCAVLRYSKLSDEQILSRLMEVIDKEGVRYDDSG 198
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT--------LLVSRVEKYRPSTLD 112
+A++ + GDMR+ LN LQS + +N D +F LL + ++ + LD
Sbjct: 199 LEALLFTAQGDMRQALNNLQSTHQGFS-FINSDNVFKVCDEPHPLLLKTMLDHCVKADLD 257
Query: 113 E---LVSH--------QDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
E ++H DII+ I +IPE + ++ + +++ R+ G + +Q
Sbjct: 258 EAYKTINHLWAMGYSPDDIITNIFRVLKTHDIPEYVKLEFIKLVAETHMRIVQGVNSLLQ 317
Query: 155 LSALIA 160
LSAL+A
Sbjct: 318 LSALVA 323
>gi|45382983|ref|NP_990861.1| replication factor C subunit 2 [Gallus gallus]
gi|1703053|sp|P53033.1|RFC2_CHICK RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40
gi|527669|gb|AAA20552.1| replication factor C/activator 1 subunit [Gallus gallus]
Length = 359
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/149 (48%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI
Sbjct: 60 DTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDA-VLELNASNDRGI 118
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 119 DVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 178
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC R+ L S I++RL
Sbjct: 179 SDKIIEPIQSRCAVLRYTKLTDSQILARL 207
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 120/270 (44%), Gaps = 74/270 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 44 VEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGP-------PGTGKTTSILCLAR 96
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 97 ALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 156
Query: 220 NALRRKL----------------------------------------------------- 226
ALRR +
Sbjct: 157 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDV 216
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P T DG +AII + GDMR+ LN LQS + +N + V+ P + +++
Sbjct: 217 PYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGF-INSENVFKVCDEPHPLLVKEMIQHC 275
Query: 287 LNESMDLCYKINRFIDENELPHL--LFYGP 314
+N ++D YKI L HL L Y P
Sbjct: 276 INANIDEAYKI--------LAHLWRLGYSP 297
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 91/190 (47%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L S I++RL ++E+E V T DG
Sbjct: 163 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDG 222
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 223 LEAIIFTAQGDMRQALNNLQSTYSGFGF-INSENVFKV----CDEPHPLLVKEMIQHCIN 277
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+D+I T ++PE + ++ + ++ ++A G +
Sbjct: 278 ANIDEAYKILAHLWRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVN 337
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 338 SLLQMAGLLA 347
>gi|225426826|ref|XP_002283246.1| PREDICTED: replication factor C subunit 2 [Vitis vinifera]
gi|297742576|emb|CBI34725.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 92/138 (66%), Gaps = 2/138 (1%)
Query: 303 ENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362
+ +P+L+ GPPGTGKTT++LA A +L A + VLELNASDDRGI +VR++I FA
Sbjct: 42 DGNMPNLILSGPPGTGKTTSVLALAHELL-GANYREAVLELNASDDRGIDVVRNKIKMFA 100
Query: 363 STK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSR 421
K T+ S+K++ILDEAD+MT AQ ALRR +E ++ + RF + CN SKI IQSR
Sbjct: 101 QKKVTLPSGSHKIVILDEADSMTTGAQQALRRTMEIYSNSTRFALACNISSKIIEPIQSR 160
Query: 422 CTRFRFGPLDSSLIMSRL 439
C RF L I+ RL
Sbjct: 161 CAIVRFSRLSDQEILGRL 178
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 120/262 (45%), Gaps = 65/262 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+ + ++V ++D +S +++ + + +L+L GT + + AL
Sbjct: 15 VEKYRPTKVADIVGNEDTVSRLQVIARDGNMPNLILSGP-------PGTGKTTSVLALAH 67
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A + VLELNASDDRGI +VR++I FA K T+ S+K++ILDEAD+MT AQ
Sbjct: 68 ELLGANYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPSGSHKIVILDEADSMTTGAQ 127
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR K+
Sbjct: 128 QALRRTMEIYSNSTRFALACNISSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVEAEKV 187
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P P+G +AII +DGDMR+ LN LQ+ + VN++ V+ P + N++R +
Sbjct: 188 PFVPEGLEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKVCDQPHPLHVKNMVRNV 246
Query: 287 LNESM-DLCYKINRFIDENELP 307
L D CY + + D P
Sbjct: 247 LEGKFDDACYGLKQLYDLGYSP 268
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ + RF + CN SKI IQSRC RF L I+ RL V+E EKV P+G
Sbjct: 134 MEIYSNSTRFALACNISSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVEAEKVPFVPEG 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
+AII +DGDMR+ LN LQ+ + VN++ +F +
Sbjct: 194 LEAIIFTADGDMRQALNNLQATYSGF-RFVNQENVFKV 230
>gi|449282866|gb|EMC89612.1| Replication factor C subunit 2, partial [Columba livia]
Length = 316
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/149 (48%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI
Sbjct: 17 DTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDA-VLELNASNDRGI 75
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 76 DVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 135
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC R+ L S I++RL
Sbjct: 136 SDKIIEPIQSRCAVLRYTKLTDSQILARL 164
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 120/270 (44%), Gaps = 74/270 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 1 VEKYRPMKLCEIVGNEDTVSRLEVFAKEGNVPNIIIAGP-------PGTGKTTSILCLAR 53
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 54 ALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 113
Query: 220 NALRRKL----------------------------------------------------- 226
ALRR +
Sbjct: 114 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDV 173
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P T DG +AII + GDMR+ LN LQS + +N + V+ P + +++
Sbjct: 174 PYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGF-INSENVFKVCDEPHPLLVKEMIQHC 232
Query: 287 LNESMDLCYKINRFIDENELPHL--LFYGP 314
+N ++D YKI L HL L Y P
Sbjct: 233 VNANIDEAYKI--------LAHLWRLGYAP 254
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 91/190 (47%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L S I++RL ++E+E V T DG
Sbjct: 120 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDG 179
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 180 LEAIIFTAQGDMRQALNNLQSTYSGFGF-INSENVFKV----CDEPHPLLVKEMIQHCVN 234
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+D+I T ++PE + ++ + ++ ++A G +
Sbjct: 235 ANIDEAYKILAHLWRLGYAPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVN 294
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 295 SLLQMAGLLA 304
>gi|326931171|ref|XP_003211707.1| PREDICTED: replication factor C subunit 2-like [Meleagris
gallopavo]
Length = 360
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/149 (48%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI
Sbjct: 61 DTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDA-VLELNASNDRGI 119
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 120 DVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 179
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC R+ L S I++RL
Sbjct: 180 SDKIIEPIQSRCAVLRYTKLTDSQILARL 208
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 120/270 (44%), Gaps = 74/270 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 45 VEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGP-------PGTGKTTSILCLAR 97
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 98 ALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 157
Query: 220 NALRRKL----------------------------------------------------- 226
ALRR +
Sbjct: 158 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDV 217
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P T DG +AII + GDMR+ LN LQS + +N + V+ P + +++
Sbjct: 218 PYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGF-INSENVFKVCDEPHPLLVKEMIQHC 276
Query: 287 LNESMDLCYKINRFIDENELPHL--LFYGP 314
+N ++D YKI L HL L Y P
Sbjct: 277 INANIDEAYKI--------LAHLWRLGYSP 298
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 91/190 (47%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L S I++RL ++E+E V T DG
Sbjct: 164 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDG 223
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 224 LEAIIFTAQGDMRQALNNLQSTYSGFGF-INSENVFKV----CDEPHPLLVKEMIQHCIN 278
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+D+I T ++PE + ++ + ++ ++A G +
Sbjct: 279 ANIDEAYKILAHLWRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVN 338
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 339 SLLQMAGLLA 348
>gi|348517074|ref|XP_003446060.1| PREDICTED: replication factor C subunit 2-like [Oreochromis
niloticus]
Length = 357
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/145 (48%), Positives = 95/145 (65%), Gaps = 2/145 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F E +P+++ GPPGTGKTT+IL AR L + +A VLELNAS+DRGI +VR
Sbjct: 62 RLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGTSMKDA-VLELNASNDRGIDVVR 120
Query: 356 DQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
++I FA K T+ K +K+IILDEAD+MT+ AQ ALRRI+E ++ RF + CN KI
Sbjct: 121 NKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRIMEIYSKTTRFALACNASDKI 180
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC R+ L I+ RL
Sbjct: 181 IEPIQSRCAVLRYSKLTDGQILVRL 205
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 116/251 (46%), Gaps = 64/251 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V +++ +S +E+ E + ++++ GT + + L
Sbjct: 42 VEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 94
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 95 ALLGTSMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 154
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR +L
Sbjct: 155 QALRRIMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQILVRLQEVVEKERL 214
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
V+ DG +AII + GDMR+ LN LQS + +N + V+ P + ++L
Sbjct: 215 SVSDDGLEAIIFTAQGDMRQALNNLQSTHSGFG-YINSENVFKVCDEPHPLMVKSMLGHC 273
Query: 287 LNESMDLCYKI 297
++ ++D YK+
Sbjct: 274 VDGNIDEAYKV 284
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 91/194 (46%), Gaps = 35/194 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L I+ RL V+E+E+++V+ DG
Sbjct: 161 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQILVRLQEVVEKERLSVSDDG 220
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + ++ H
Sbjct: 221 LEAIIFTAQGDMRQALNNLQSTHSGFG-YINSENVFKV----CDEPHPLMVKSMLGHCVD 275
Query: 118 --------------------QDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTS 150
+DII I ++ E + ++ + ++ R+A G +
Sbjct: 276 GNIDEAYKVVEQLWALGYSPEDIIGNIFRVCKTYQMAEYLKLEFIKEIGYTHMRIAEGVN 335
Query: 151 EKIQLSALIAAFNS 164
+Q++ L+A S
Sbjct: 336 SLLQMAGLLARLCS 349
>gi|348041239|ref|NP_001013344.2| replication factor C subunit 2 [Danio rerio]
Length = 353
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 2/141 (1%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI +VR++I
Sbjct: 62 FAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAMKDA-VLELNASNDRGIDVVRNKIK 120
Query: 360 QFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418
FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN KI I
Sbjct: 121 MFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPI 180
Query: 419 QSRCTRFRFGPLDSSLIMSRL 439
QSRC R+ L IM RL
Sbjct: 181 QSRCAVLRYSKLRDEQIMMRL 201
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 115/251 (45%), Gaps = 64/251 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V +++ +S +E+ E + ++++ GT + + L
Sbjct: 38 VEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 90
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 91 ALLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 150
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR L
Sbjct: 151 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKENL 210
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
VT DG +AII + GDMR+ LN LQS + +N + V+ P + ++L
Sbjct: 211 HVTNDGLEAIIFTAQGDMRQALNNLQSTNSGFG-YINSENVFKVCDEPHPLLVKSMLEHC 269
Query: 287 LNESMDLCYKI 297
+N ++D YKI
Sbjct: 270 VNANIDEAYKI 280
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 27/186 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L IM RL V+E+E ++VT DG
Sbjct: 157 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKENLHVTNDG 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT--------LLVSRVEKYRPSTLD 112
+AII + GDMR+ LN LQS + +N + +F L+ S +E + +D
Sbjct: 217 LEAIIFTAQGDMRQALNNLQSTNSGFG-YINSENVFKVCDEPHPLLVKSMLEHCVNANID 275
Query: 113 EL-----------VSHQDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
E S +DII T ++ E + ++ + ++ ++A G + +Q
Sbjct: 276 EAYKIIEQLWSLGYSPEDIIGNIFRVCKTFQMAEYLKLEYIKEIGYTHMKVAEGVNSLLQ 335
Query: 155 LSALIA 160
++ L+
Sbjct: 336 MAGLLG 341
>gi|193605856|ref|XP_001945771.1| PREDICTED: replication factor C subunit 2-like isoform 1
[Acyrthosiphon pisum]
gi|328696454|ref|XP_003240029.1| PREDICTED: replication factor C subunit 2-like isoform 2
[Acyrthosiphon pisum]
Length = 363
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 98/156 (62%), Gaps = 6/156 (3%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ +F +P+++ GPPG GKTTTILA AR L A F VLELNAS DRGI VR
Sbjct: 69 RLEKFSSCGNVPNIIIAGPPGVGKTTTILALARILLGGA-FKEAVLELNASSDRGIDTVR 127
Query: 356 DQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
++I FA K T+ +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN KI
Sbjct: 128 NKIKMFAQQKVTLPPGRHKIIILDEADSMTDGAQQALRRTMELWSNTTRFALACNNSDKI 187
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISF 446
AIQSRC R+G L +M+++ +++SF
Sbjct: 188 IEAIQSRCAMLRYGKLSDQEVMTQMLKVCKSEEVSF 223
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 25/193 (12%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI AIQSRC R+G L +M+++ V + E+V+ + DG
Sbjct: 168 MELWSNTTRFALACNNSDKIIEAIQSRCAMLRYGKLSDQEVMTQMLKVCKSEEVSFSADG 227
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA--HADEVNE----DTIFTLLVSRV----EKYRPST 110
+A++ + GDMR+ LN LQS H D N D LLV + S
Sbjct: 228 LEAVVFTAQGDMRQALNNLQSTWNGFRHVDSTNVFKVCDEPHPLLVKEMLLECADQNISK 287
Query: 111 LDELVSH--------QDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
++++H +DII+ I EI ES+ + V ++ R+ G + +QL
Sbjct: 288 AYKIMAHLWKLGYAPEDIITNIFRVAKHLEIKESLKLKFVQEIGMAHIRIVEGMNSLLQL 347
Query: 156 SALIAAFNSARDK 168
S L+A + K
Sbjct: 348 SGLLAKLCTVSAK 360
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 122/310 (39%), Gaps = 79/310 (25%)
Query: 63 AIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIIS 122
A+ID +G N+L + V D L +EKYRP + ++V +++ +
Sbjct: 14 AVIDPMEGCSTSTNNVL-TTVPPQTKTVKSD----LNTPWIEKYRPKSFTDIVGNEETVL 68
Query: 123 TIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGI 182
+E S + +I G + + AL K VLELNAS DRGI
Sbjct: 69 RLEKFSS-----CGNVPNIIIAGPPGVGKTTTILALARILLGGAFKEAVLELNASSDRGI 123
Query: 183 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRKLPV------------- 228
VR++I FA K T+ +K+IILDEAD+MT+ AQ ALRR + +
Sbjct: 124 DTVRNKIKMFAQQKVTLPPGRHKIIILDEADSMTDGAQQALRRTMELWSNTTRFALACNN 183
Query: 229 ----------------------------------------TPDGKKAIIDLSDGDMRKVL 248
+ DG +A++ + GDMR+ L
Sbjct: 184 SDKIIEAIQSRCAMLRYGKLSDQEVMTQMLKVCKSEEVSFSADGLEAVVFTAQGDMRQAL 243
Query: 249 NILQSAATA--HADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYKINRFIDENEL 306
N LQS H D N V+ P + +L ++++ YKI +
Sbjct: 244 NNLQSTWNGFRHVDSTN---VFKVCDEPHPLLVKEMLLECADQNISKAYKI--------M 292
Query: 307 PHL--LFYGP 314
HL L Y P
Sbjct: 293 AHLWKLGYAP 302
>gi|167999374|ref|XP_001752392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696292|gb|EDQ82631.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 333
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 290 SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR 349
+ D+ ++ +P+L+F GPPGTGKTT+ILA A +L F VLELNASDDR
Sbjct: 33 NQDVVARLQVIAQGGNMPNLIFSGPPGTGKTTSILALAHELL-GPNFKEAVLELNASDDR 91
Query: 350 GIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
GI +VR++I FA K T+ +K+++LDEAD+MT AQ ALRR +E ++ RF + C
Sbjct: 92 GIDVVRNKIKMFAQKKVTLPPGRHKVVLLDEADSMTAGAQQALRRTMEIYSNTTRFALAC 151
Query: 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
N SKI IQSRC RF L S I+ RL
Sbjct: 152 NLSSKIIEPIQSRCAIVRFSRLSDSEILDRL 182
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 111/247 (44%), Gaps = 60/247 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP + ++V +QD+++ +++ + M ++ + GT + + AL
Sbjct: 19 VEKYRPHRVADIVGNQDVVARLQV-----IAQGGNMPNLIFSGPPGTGKTTSILALAHEL 73
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNA 221
K VLELNASDDRGI +VR++I FA K T+ +K+++LDEAD+MT AQ A
Sbjct: 74 LGPNFKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVLLDEADSMTAGAQQA 133
Query: 222 LRR-----------------------------------------------------KLPV 228
LRR K+P
Sbjct: 134 LRRTMEIYSNTTRFALACNLSSKIIEPIQSRCAIVRFSRLSDSEILDRLLRVVEAEKVPY 193
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
P+G +A++ +DGDMR+ LN LQ+ + VN+D V+ P I++ +
Sbjct: 194 VPEGLEAVVFTADGDMRQALNNLQATFSGF-QFVNQDNVFRVCDQPHPLLAQQIIKHCIA 252
Query: 289 ESMDLCY 295
++D Y
Sbjct: 253 GNIDDAY 259
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 97/194 (50%), Gaps = 27/194 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN SKI IQSRC RF L S I+ RL V+E EKV P+G
Sbjct: 138 MEIYSNTTRFALACNLSSKIIEPIQSRCAIVRFSRLSDSEILDRLLRVVEAEKVPYVPEG 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF-------TLLVSRVEKY------- 106
+A++ +DGDMR+ LN LQ+ + VN+D +F LL ++ K+
Sbjct: 198 LEAVVFTADGDMRQALNNLQATFSGF-QFVNQDNVFRVCDQPHPLLAQQIIKHCIAGNID 256
Query: 107 -RPSTLDEL----VSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
+ L +L S DII+T+ E+ E + ++ + ++ R+A G +Q
Sbjct: 257 DAYTGLKQLYDMGYSATDIITTLFRVVKNYEMVEFLKLEFIREVGFAHMRIADGVGTLLQ 316
Query: 155 LSALIAAFNSARDK 168
LS L+A R++
Sbjct: 317 LSGLLAKLCKVRER 330
>gi|410898978|ref|XP_003962974.1| PREDICTED: replication factor C subunit 2-like [Takifugu rubripes]
Length = 350
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 96/145 (66%), Gaps = 2/145 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F E +P+++ GPPGTGKTT+IL AR L + +A VLELNAS+DRGI +VR
Sbjct: 55 RLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGASTKDA-VLELNASNDRGIDVVR 113
Query: 356 DQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
++I FA K T+ + +K+IILDEAD+MT+ AQ ALRRI+E ++ RF + CN KI
Sbjct: 114 NKIKMFAQQKVTLPRGRHKIIILDEADSMTDGAQQALRRIMEIYSKTTRFALACNASDKI 173
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC R+ L I++RL
Sbjct: 174 IEPIQSRCAVLRYSKLTDGQILARL 198
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 116/251 (46%), Gaps = 64/251 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V +++ +S +E+ E + ++++ GT + + L
Sbjct: 35 VEKYRPLKLNEVVGNEETVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 87
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A A K VLELNAS+DRGI +VR++I FA K T+ + +K+IILDEAD+MT+ AQ
Sbjct: 88 ALLGASTKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIILDEADSMTDGAQ 147
Query: 220 NALRRKLPVTP--------------------------------DGK-------------- 233
ALRR + + DG+
Sbjct: 148 QALRRIMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQILARLQEVVEKEAL 207
Query: 234 -------KAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
+A+I + GDMR+ LN LQS A VN + V+ P + ++L
Sbjct: 208 SVSDDGLEAVIFTAQGDMRQALNNLQS-TNAGFGFVNSENVFKVCDEPHPLLVKSMLGHC 266
Query: 287 LNESMDLCYKI 297
++ ++D YK+
Sbjct: 267 VDGNIDEAYKV 277
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 31/192 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L I++RL V+E+E ++V+ DG
Sbjct: 154 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQILARLQEVVEKEALSVSDDG 213
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT-------LLVSRV---------- 103
+A+I + GDMR+ LN LQS A VN + +F LLV +
Sbjct: 214 LEAVIFTAQGDMRQALNNLQS-TNAGFGFVNSENVFKVCDEPHPLLVKSMLGHCVDGNID 272
Query: 104 EKYRPSTLDEL----VSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEK 152
E Y+ +++L S +DII I ++ E + ++ + ++ R+A G +
Sbjct: 273 EAYK--VVEQLWALGYSPEDIIGNIFRVCKTYQMAEYLKLEFIKEIGYTHMRVAEGVNSL 330
Query: 153 IQLSALIAAFNS 164
+Q++ L+ S
Sbjct: 331 LQMAGLLGRLCS 342
>gi|449479599|ref|XP_002192072.2| PREDICTED: replication factor C subunit 2-like [Taeniopygia
guttata]
Length = 310
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 103/160 (64%), Gaps = 6/160 (3%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI
Sbjct: 11 DTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDA-VLELNASNDRGI 69
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 70 DVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 129
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISF 446
KI IQSRC R+ L + I++RL + +D+++
Sbjct: 130 SDKIIEPIQSRCAVLRYTKLTDAQILARLLKIVEKEDVAY 169
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 114/262 (43%), Gaps = 74/262 (28%)
Query: 111 LDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDK 168
L E+V ++D +S +E+ E + ++++ GT + + L A K
Sbjct: 3 LSEIVGNEDTVSRLEVFAKEGNVPNIIIAGP-------PGTGKTTSILCLARALLGPALK 55
Query: 169 LEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRKLP 227
VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +
Sbjct: 56 DAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTME 115
Query: 228 V-----------------------------------------------------TPDGKK 234
+ T DG +
Sbjct: 116 IYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLKIVEKEDVAYTDDGLE 175
Query: 235 AIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLC 294
AII + GDMR+ LN LQS + +N + V+ P + +++ +N ++D
Sbjct: 176 AIIFTAQGDMRQALNNLQSTYSGFG-FINSENVFKVCDEPHPLLVKEMIQHCINANIDEA 234
Query: 295 YKINRFIDENELPHL--LFYGP 314
YKI L HL L Y P
Sbjct: 235 YKI--------LAHLWRLGYSP 248
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + I++RL ++E+E V T DG
Sbjct: 114 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLKIVEKEDVAYTDDG 173
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 174 LEAIIFTAQGDMRQALNNLQSTYSGFG-FINSENVFKV----CDEPHPLLVKEMIQHCIN 228
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+D+I T ++PE + ++ + ++ ++A G +
Sbjct: 229 ANIDEAYKILAHLWRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVN 288
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 289 SLLQMAGLLA 298
>gi|60477744|gb|AAH90779.1| Zgc:110810 [Danio rerio]
gi|182890088|gb|AAI64018.1| Zgc:110810 protein [Danio rerio]
Length = 349
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 2/141 (1%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI +VR++I
Sbjct: 58 FAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAMKDA-VLELNASNDRGIDVVRNKIK 116
Query: 360 QFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418
FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN KI I
Sbjct: 117 MFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPI 176
Query: 419 QSRCTRFRFGPLDSSLIMSRL 439
QSRC R+ L IM RL
Sbjct: 177 QSRCAVLRYSKLRDEQIMMRL 197
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 115/251 (45%), Gaps = 64/251 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V +++ +S +E+ E + ++++ GT + + L
Sbjct: 34 VEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 86
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 87 ALLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 146
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR L
Sbjct: 147 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKENL 206
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
VT DG +AII + GDMR+ LN LQS + +N + V+ P + ++L
Sbjct: 207 HVTNDGLEAIIFTAQGDMRQALNNLQSTNSGFG-YINSENVFKVCDEPHPLLVKSMLEHC 265
Query: 287 LNESMDLCYKI 297
+N ++D YKI
Sbjct: 266 VNANIDEAYKI 276
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 27/186 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L IM RL V+E+E ++VT DG
Sbjct: 153 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKENLHVTNDG 212
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT--------LLVSRVEKYRPSTLD 112
+AII + GDMR+ LN LQS + +N + +F L+ S +E + +D
Sbjct: 213 LEAIIFTAQGDMRQALNNLQSTNSGFG-YINSENVFKVCDEPHPLLVKSMLEHCVNANID 271
Query: 113 EL-----------VSHQDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
E S +DII T ++ E + ++ + ++ ++A G + +Q
Sbjct: 272 EAYKIIEQLWSLGYSPEDIIGNIFRVCKTFQMAEYLKLEYIKEIGYTHMKVAEGVNSLLQ 331
Query: 155 LSALIA 160
++ L+
Sbjct: 332 MAGLLG 337
>gi|355716182|gb|AES05529.1| replication factor C 2, 40kDa [Mustela putorius furo]
Length = 351
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 96/149 (64%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A F VLELNAS+DRGI
Sbjct: 53 DTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGSA-FKDAVLELNASNDRGI 111
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ + +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 112 DVVRNKIKMFAQQKVTLPRGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 171
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC R+ L + +++RL
Sbjct: 172 SDKIIEPIQSRCAVLRYTKLSDAQVLARL 200
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 121/267 (45%), Gaps = 72/267 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 89
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A + K VLELNAS+DRGI +VR++I FA K T+ + +K+IILDEAD+MT+ AQ
Sbjct: 90 ALLGSAFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIILDEADSMTDGAQ 149
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR K+
Sbjct: 150 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLAVLEQEKV 209
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P T DG +A+I + GDMR+ LN +QS + +N + V+ P + +L+
Sbjct: 210 PYTDDGLEAVIFTAQGDMRQALNNVQSTFSGFGF-INSENVFKVCDEPHPLLVKEMLQHC 268
Query: 287 LNESMDLCYKINRFIDENELPHLLFYG 313
+N ++D YKI L HL G
Sbjct: 269 VNANIDEAYKI--------LAHLWHLG 287
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + +++RL V+EQEKV T DG
Sbjct: 156 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLAVLEQEKVPYTDDG 215
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+A+I + GDMR+ LN +QS + +N + +F + ++ P + E++ H
Sbjct: 216 LEAVIFTAQGDMRQALNNVQSTFSGFGF-INSENVFKV----CDEPHPLLVKEMLQHCVN 270
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+DII T ++ E + ++++ ++ ++A G +
Sbjct: 271 ANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEIIKEIGYTHMKIAEGVN 330
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 331 SLLQMAGLLA 340
>gi|395843019|ref|XP_003794301.1| PREDICTED: replication factor C subunit 2 [Otolemur garnettii]
Length = 352
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 101/157 (64%), Gaps = 5/157 (3%)
Query: 287 LNESM---DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLEL 343
LNE + D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLEL
Sbjct: 45 LNEVVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAMKDA-VLEL 103
Query: 344 NASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNV 402
NAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++
Sbjct: 104 NASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTT 163
Query: 403 RFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RF + CN KI IQSRC R+ L + I++RL
Sbjct: 164 RFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARL 200
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 120/267 (44%), Gaps = 72/267 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 37 VEKYRPIKLNEVVGNEDTVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 89
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 90 ALLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 149
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR K+
Sbjct: 150 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLNVIEKEKV 209
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P T DG +AII + GDMR+ LN LQS + +N + V+ P + +++
Sbjct: 210 PYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKVCDEPHPLLVKEMIQHC 268
Query: 287 LNESMDLCYKINRFIDENELPHLLFYG 313
++ ++D YKI L HL G
Sbjct: 269 VDANIDEAYKI--------LAHLWHLG 287
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + I++RL VIE+EKV T DG
Sbjct: 156 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLNVIEKEKVPYTDDG 215
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 216 LEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKV----CDEPHPLLVKEMIQHCVD 270
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+D+I T ++ E + ++ + ++ ++A G +
Sbjct: 271 ANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKVAEGVN 330
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 331 SLLQMAGLLA 340
>gi|410984622|ref|XP_003998626.1| PREDICTED: replication factor C subunit 2 isoform 1 [Felis catus]
Length = 352
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 96/149 (64%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A F VLELNAS+DRGI
Sbjct: 53 DTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA-FKDAVLELNASNDRGI 111
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ K +K++ILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 112 DVVRNKIKMFAQQKVTLPKGRHKIMILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 171
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC R+ L + +++RL
Sbjct: 172 SDKIIEPIQSRCAVLRYTKLSDAQVLARL 200
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 118/267 (44%), Gaps = 72/267 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 37 VEKYRPVKLSEIVGNEDTVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 89
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K++ILDEAD+MT+ AQ
Sbjct: 90 ALLGPAFKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIMILDEADSMTDGAQ 149
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR K+
Sbjct: 150 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLMTVLEQEKV 209
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
T DG +AII + GDMR+ LN LQS + +N + V+ P + +++
Sbjct: 210 QYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKVCDEPHPLLVKEMIQHC 268
Query: 287 LNESMDLCYKINRFIDENELPHLLFYG 313
+N ++D YKI L HL G
Sbjct: 269 VNANIDEAYKI--------LAHLWHLG 287
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + +++RL V+EQEKV T DG
Sbjct: 156 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLMTVLEQEKVQYTDDG 215
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 216 LEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKV----CDEPHPLLVKEMIQHCVN 270
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+DII T ++ E + ++ + ++ ++A G +
Sbjct: 271 ANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVN 330
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 331 SLLQMAGLLA 340
>gi|221052961|ref|XP_002257855.1| replication factor C, subunit 2 [Plasmodium knowlesi strain H]
gi|193807687|emb|CAQ38391.1| replication factor C, subunit 2, putative [Plasmodium knowlesi
strain H]
Length = 330
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 93/138 (67%), Gaps = 12/138 (8%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA--- 362
+PHL+F+GPPGTGKT+ I A A +L+ + + VLELNASDDRGI +VR++I +
Sbjct: 37 MPHLIFHGPPGTGKTSAINALAHELFGRDNISERVLELNASDDRGINVVREKIKAYTRIS 96
Query: 363 -STKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
S ++ + +KL++LDEAD MT DAQ+ALRRIIE ++ RF +ICNY+ KI
Sbjct: 97 ISKNKINSETNETLPPWKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKIS 156
Query: 416 PAIQSRCTRFRFG--PLD 431
I SRC+ +RF P+D
Sbjct: 157 DPIYSRCSCYRFQGIPID 174
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 22/136 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD++V + +S ML ++V M + + GT + ++AL
Sbjct: 7 VEKYRPKKLDDIVHQTNAVS-------MLKEVVRTKNMPHLIFHGPPGTGKTSAINALAH 59
Query: 161 AFNSARDKL--EVLELNASDDRGIGIVRDQIFQFA----STKTMHKSS------YKLIIL 208
RD + VLELNASDDRGI +VR++I + S ++ + +KL++L
Sbjct: 60 EL-FGRDNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWKLVVL 118
Query: 209 DEADAMTNDAQNALRR 224
DEAD MT DAQ+ALRR
Sbjct: 119 DEADMMTEDAQSALRR 134
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 90/190 (47%), Gaps = 26/190 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RF +ICNY+ KI+ I SRC+ +RF + + +L Y+ + E +N+ D
Sbjct: 136 IEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPIDVKKEKLLYICKSEGINILDDA 195
Query: 61 KKAIIDLSDGDMRKVLNILQ---------------SAATAHADEVNEDTIFTLLVSRVEK 105
II+ + GD+R+ ++ILQ + AD++ I + ++
Sbjct: 196 LDKIIETTQGDLRRAVSILQLCSCIDPMITLESVLDVSGLPADDIISKIIDACKMKDLKN 255
Query: 106 YRPSTLDELVSHQDI-----------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
+ D + D+ + E +S+ ++L++S +YRL +G ++ IQ
Sbjct: 256 VEKAVQDIIEDGYDVAYIFKSLNNYFVMNTEYQDSVKSQILLELSRHDYRLHSGATKYIQ 315
Query: 155 LSALIAAFNS 164
L + ++ +S
Sbjct: 316 LMSFASSVHS 325
>gi|213513822|ref|NP_001134786.1| replication factor C subunit 2 [Salmo salar]
gi|209735998|gb|ACI68868.1| Replication factor C subunit 2 [Salmo salar]
Length = 353
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI +VR
Sbjct: 58 RLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAMKDA-VLELNASNDRGIDVVR 116
Query: 356 DQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN KI
Sbjct: 117 NKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKI 176
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC R+ L IM RL
Sbjct: 177 IEPIQSRCAVLRYTKLRDEQIMMRL 201
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 114/251 (45%), Gaps = 64/251 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V +++ +S +E+ E + ++++ GT + + L
Sbjct: 38 VEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 90
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 91 ALLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 150
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR L
Sbjct: 151 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLRDEQIMMRLLEVVERENL 210
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
+ DG +AII + GDMR+ LN LQS + +N + V+ P + ++L
Sbjct: 211 VTSNDGLEAIIFTAQGDMRQALNNLQSTNSGFG-YINSENVFKVCDEPHPLLVKSMLEHC 269
Query: 287 LNESMDLCYKI 297
+N ++D YKI
Sbjct: 270 VNANIDEAYKI 280
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 27/190 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L IM RL V+E+E + + DG
Sbjct: 157 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLRDEQIMMRLLEVVERENLVTSNDG 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT--------LLVSRVEKYRPSTLD 112
+AII + GDMR+ LN LQS + +N + +F L+ S +E + +D
Sbjct: 217 LEAIIFTAQGDMRQALNNLQSTNSGFG-YINSENVFKVCDEPHPLLVKSMLEHCVNANID 275
Query: 113 EL-----------VSHQDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
E S +DII T ++PE + ++ + ++ ++A G + +Q
Sbjct: 276 EAYKIIEQLWALGYSPEDIIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKVAEGVNSLLQ 335
Query: 155 LSALIAAFNS 164
++ L+ S
Sbjct: 336 MAGLLGRLCS 345
>gi|339264352|ref|XP_003366698.1| hypothetical protein Tsp_15369 [Trichinella spiralis]
gi|316956812|gb|EFV46929.1| hypothetical protein Tsp_15369 [Trichinella spiralis]
Length = 235
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 91/137 (66%), Gaps = 7/137 (5%)
Query: 310 LFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI---FQFASTKT 366
LFYGPPGTGKT+ ILA R+++ + VLELNASD+RGI ++RD++ QFA+++
Sbjct: 5 LFYGPPGTGKTSAILALCRQIFGSEIYRDRVLELNASDERGIDVIRDKVKLFSQFAASEI 64
Query: 367 MHKSS----YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRC 422
K++ILDEAD+MT AQ ALRR +E+ + RFC+ICNY+S I I SRC
Sbjct: 65 TEGGKKCPPLKMVILDEADSMTKQAQAALRRTMERESKTTRFCLICNYISCIIEPITSRC 124
Query: 423 TRFRFGPLDSSLIMSRL 439
+FRF PL + + RL
Sbjct: 125 AKFRFKPLTLEIQIERL 141
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 52/84 (61%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+ + RFC+ICNY+S I I SRC +FRF PL + + RL + E E V++
Sbjct: 97 MERESKTTRFCLICNYISCIIEPITSRCAKFRFKPLTLEIQIERLRKICENESVSIDDAA 156
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT 84
++I DGD+R+ +N LQSAA+
Sbjct: 157 LSSLISFCDGDLRRAINTLQSAAS 180
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 67/151 (44%), Gaps = 62/151 (41%)
Query: 166 RDKLEVLELNASDDRGIGIVRDQI---FQFASTKTMHKSS----YKLIILDEADAMTNDA 218
RD+ VLELNASD+RGI ++RD++ QFA+++ K++ILDEAD+MT A
Sbjct: 32 RDR--VLELNASDERGIDVIRDKVKLFSQFAASEITEGGKKCPPLKMVILDEADSMTKQA 89
Query: 219 QNALRRKL---------------------PVTPDGKK----------------------- 234
Q ALRR + P+T K
Sbjct: 90 QAALRRTMERESKTTRFCLICNYISCIIEPITSRCAKFRFKPLTLEIQIERLRKICENES 149
Query: 235 ---------AIIDLSDGDMRKVLNILQSAAT 256
++I DGD+R+ +N LQSAA+
Sbjct: 150 VSIDDAALSSLISFCDGDLRRAINTLQSAAS 180
>gi|304314452|ref|YP_003849599.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
gi|302587911|gb|ADL58286.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
Length = 317
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 94/149 (63%), Gaps = 8/149 (5%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKL---YTKAQFNAMVLELNASDDRGIG 352
++ R+++E +P+L+F GP G GKTTT LA AR++ Y + F LELNASD RGI
Sbjct: 26 RLKRYVEERSMPNLMFTGPAGVGKTTTALALAREILGEYWRQNF----LELNASDARGID 81
Query: 353 IVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
VR I F K + + +++I LDE D MT DAQ+ALRR +E +T F + CNY S
Sbjct: 82 TVRTSIKNFCRLKPVG-APFRIIFLDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSS 140
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
KI IQSRC FRF PL I+SRL+Y
Sbjct: 141 KIIDPIQSRCAIFRFLPLKGRHIISRLEY 169
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 99/194 (51%), Gaps = 34/194 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T F + CNY SKI IQSRC FRF PL I+SRL+Y+ EQE + P
Sbjct: 123 MEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGRHIISRLEYIAEQEGLEYEPQA 182
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSR-----VEKYRPSTLD--- 112
++ ++GD+RK +NILQSAA+ +++ E +I+ +VSR V K + LD
Sbjct: 183 LDTVVYFAEGDLRKAINILQSAASL-GEKITESSIYE-VVSRARPKDVRKMIMTILDGKF 240
Query: 113 -------------ELVSHQDIISTI-----------EIPESMLVDLVLKMSDIEYRLAAG 148
+ +S +D+++ I I + L+ + + ++R+ G
Sbjct: 241 MEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGSIEGERYIKLIEAVGEYDFRIREG 300
Query: 149 TSEKIQLSALIAAF 162
+ +IQL AL+A F
Sbjct: 301 ANPRIQLEALLARF 314
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 101/241 (41%), Gaps = 64/241 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD++V + II ++ + E M ++ + AG + AL
Sbjct: 6 VEKYRPQKLDDIVGQEHIIPRLKRYVEER-------SMPNLMFTGPAGVGKTTTALALAR 58
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELNASD RGI VR I F K + + +++I LDE D MT DAQ+
Sbjct: 59 EILGEYWRQNFLELNASDARGIDTVRTSIKNFCRLKPVG-APFRIIFLDEVDNMTKDAQH 117
Query: 221 ALRRK---------------------------------LPVT------------------ 229
ALRR+ LP+
Sbjct: 118 ALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGRHIISRLEYIAEQEGLE 177
Query: 230 --PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
P ++ ++GD+RK +NILQSAA+ +++ E ++Y V ++ ++ +L
Sbjct: 178 YEPQALDTVVYFAEGDLRKAINILQSAASL-GEKITESSIYEVVSRARPKDVRKMIMTIL 236
Query: 288 N 288
+
Sbjct: 237 D 237
>gi|73957665|ref|XP_546916.2| PREDICTED: replication factor C subunit 2 isoform 1 [Canis lupus
familiaris]
Length = 352
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI
Sbjct: 53 DTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDA-VLELNASNDRGI 111
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 112 DVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 171
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC R+ L + +++RL
Sbjct: 172 SDKIIEPIQSRCAVLRYTKLSDAQVLARL 200
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 120/267 (44%), Gaps = 72/267 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGP-------PGTGKTTSILCLAR 89
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 90 ALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 149
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR K+
Sbjct: 150 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKV 209
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P T DG +A+I + GDMR+ LN +QS + +N + V+ P + +++
Sbjct: 210 PYTDDGLEAVIFTAQGDMRQALNNVQSTFSGFGF-INSENVFKVCDEPHPLLVKEMIQHC 268
Query: 287 LNESMDLCYKINRFIDENELPHLLFYG 313
+N ++D YKI L HL G
Sbjct: 269 VNANIDEAYKI--------LAHLWHLG 287
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + +++RL V+EQEKV T DG
Sbjct: 156 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDG 215
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+A+I + GDMR+ LN +QS + +N + +F + ++ P + E++ H
Sbjct: 216 LEAVIFTAQGDMRQALNNVQSTFSGFGF-INSENVFKV----CDEPHPLLVKEMIQHCVN 270
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+DII T ++ E + ++ + ++ ++A G +
Sbjct: 271 ANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVN 330
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 331 SLLQMAGLLA 340
>gi|31563534|ref|NP_852136.1| replication factor C subunit 2 isoform 1 [Homo sapiens]
gi|2507300|sp|P35250.3|RFC2_HUMAN RecName: Full=Replication factor C subunit 2; AltName:
Full=Activator 1 40 kDa subunit; Short=A1 40 kDa
subunit; AltName: Full=Activator 1 subunit 2; AltName:
Full=Replication factor C 40 kDa subunit; Short=RF-C 40
kDa subunit; Short=RFC40
gi|1590811|gb|AAB09786.1| replication factor C, 40-kDa subunit [Homo sapiens]
gi|2914760|gb|AAC04860.1| replication factor C subunit 2 [Homo sapiens]
gi|30172692|gb|AAP22334.1| unknown [Homo sapiens]
gi|119590013|gb|EAW69607.1| replication factor C (activator 1) 2, 40kDa, isoform CRA_b [Homo
sapiens]
gi|119590014|gb|EAW69608.1| replication factor C (activator 1) 2, 40kDa, isoform CRA_b [Homo
sapiens]
gi|197692187|dbj|BAG70057.1| replication factor C 2 isoform 1 [Homo sapiens]
gi|208967280|dbj|BAG73654.1| replication factor C (activator 1) 2 [synthetic construct]
Length = 354
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A +AM LELNAS+DRGI
Sbjct: 55 DTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAM-LELNASNDRGI 113
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 114 DVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 173
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC R+ L + I++RL
Sbjct: 174 SDKIIEPIQSRCAVLRYTKLTDAQILTRL 202
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 120/267 (44%), Gaps = 72/267 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 39 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 91
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K +LELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 92 ALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 151
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR ++
Sbjct: 152 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERV 211
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P T DG +AII + GDMR+ LN LQS + +N + V+ P + +++
Sbjct: 212 PYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKVCDEPHPLLVKEMIQHC 270
Query: 287 LNESMDLCYKINRFIDENELPHLLFYG 313
+N ++D YKI L HL G
Sbjct: 271 VNANIDEAYKI--------LAHLWHLG 289
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + I++RL VIE+E+V T DG
Sbjct: 158 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDG 217
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 218 LEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKV----CDEPHPLLVKEMIQHCVN 272
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+DII T ++ E + ++ + ++ ++A G +
Sbjct: 273 ANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVN 332
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 333 SLLQMAGLLA 342
>gi|197692437|dbj|BAG70182.1| replication factor C 2 isoform 1 [Homo sapiens]
Length = 354
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A +AM LELNAS+DRGI
Sbjct: 55 DTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAM-LELNASNDRGI 113
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 114 DVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 173
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC R+ L + I++RL
Sbjct: 174 SDKIIEPIQSRCAVLRYTKLTDAQILTRL 202
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 120/267 (44%), Gaps = 72/267 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 39 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 91
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K +LELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 92 ALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 151
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR ++
Sbjct: 152 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERV 211
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P T DG +AII + GDMR+ LN LQS + +N + V+ P + +++
Sbjct: 212 PYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKVCDEPHPLLVKEMIQHC 270
Query: 287 LNESMDLCYKINRFIDENELPHLLFYG 313
+N ++D YKI L HL G
Sbjct: 271 VNANIDEAYKI--------LAHLWHLG 289
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + I++RL VIE+E+V T DG
Sbjct: 158 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDG 217
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 218 LEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKV----CDEPHPLLVKEMIQHCVN 272
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+DII T ++ E + ++ + ++ ++A G +
Sbjct: 273 ANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVN 332
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 333 SLLQMAGLLA 342
>gi|114613995|ref|XP_001149874.1| PREDICTED: replication factor C subunit 2 isoform 4 [Pan
troglodytes]
gi|410213960|gb|JAA04199.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410213962|gb|JAA04200.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250164|gb|JAA13049.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250166|gb|JAA13050.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250168|gb|JAA13051.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250170|gb|JAA13052.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
gi|410250172|gb|JAA13053.1| replication factor C (activator 1) 2, 40kDa [Pan troglodytes]
Length = 354
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A +AM LELNAS+DRGI
Sbjct: 55 DTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAM-LELNASNDRGI 113
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 114 DVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 173
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC R+ L + I++RL
Sbjct: 174 SDKIIEPIQSRCAVLRYTKLTDAQILTRL 202
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 120/267 (44%), Gaps = 72/267 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 39 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 91
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K +LELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 92 ALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 151
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR ++
Sbjct: 152 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERV 211
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P T DG +AII + GDMR+ LN LQS + +N + V+ P + +++
Sbjct: 212 PYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKVCDEPHPLLVKEMIQHC 270
Query: 287 LNESMDLCYKINRFIDENELPHLLFYG 313
+N ++D YKI L HL G
Sbjct: 271 VNANIDEAYKI--------LAHLWHLG 289
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + I++RL VIE+E+V T DG
Sbjct: 158 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDG 217
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 218 LEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKV----CDEPHPLLVKEMIQHCVN 272
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+DII T ++ E + ++ + ++ ++A G +
Sbjct: 273 ANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVN 332
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 333 SLLQMAGLLA 342
>gi|156093657|ref|XP_001612867.1| replication factor C subunit 2 [Plasmodium vivax Sal-1]
gi|148801741|gb|EDL43140.1| replication factor C subunit 2, putative [Plasmodium vivax]
Length = 330
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/132 (49%), Positives = 90/132 (68%), Gaps = 10/132 (7%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA--- 362
+PHL+F+GPPGTGKT+ I A A +L+ + + VLELNASDDRGI +VR++I +
Sbjct: 37 MPHLIFHGPPGTGKTSAINALAHELFGRDNISERVLELNASDDRGINVVREKIKAYTRIS 96
Query: 363 -STKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
S ++ + +KL++LDEAD MT DAQ+ALRRIIE ++ RF +ICNY+ KI
Sbjct: 97 ISKNKINSETNETLPPWKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKIS 156
Query: 416 PAIQSRCTRFRF 427
I SRC+ +RF
Sbjct: 157 DPIYSRCSCYRF 168
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 22/136 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD++V + +S ML ++V M + + GT + ++AL
Sbjct: 7 VEKYRPKKLDDIVHQTNAVS-------MLKEVVRTKNMPHLIFHGPPGTGKTSAINALAH 59
Query: 161 AFNSARDKL--EVLELNASDDRGIGIVRDQIFQFA----STKTMHKSS------YKLIIL 208
RD + VLELNASDDRGI +VR++I + S ++ + +KL++L
Sbjct: 60 EL-FGRDNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWKLVVL 118
Query: 209 DEADAMTNDAQNALRR 224
DEAD MT DAQ+ALRR
Sbjct: 119 DEADMMTEDAQSALRR 134
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 91/190 (47%), Gaps = 26/190 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RF +ICNY+ KI+ I SRC+ +RF + ++ +L Y+ + E +N+ D
Sbjct: 136 IEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKDKLLYICKSEGINILDDA 195
Query: 61 KKAIIDLSDGDMRKVLNILQ---------------SAATAHADEVNEDTIFTLLVSRVEK 105
II+ + GD+R+ ++ILQ + AD++ I + ++
Sbjct: 196 LDKIIETTQGDLRRAVSILQLCSCIDPMITLESVLDVSGLPADDIISKIIDACKMKDLKN 255
Query: 106 YRPSTLDELVSHQDI-----------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
+ D + D+ + E +S+ ++L++S +YRL +G ++ IQ
Sbjct: 256 VEKAVQDVIEDGYDVAYIFKSLNNYFVMNTEYQDSVKSQILLELSRHDYRLHSGATKYIQ 315
Query: 155 LSALIAAFNS 164
L + ++ +S
Sbjct: 316 LMSFASSVHS 325
>gi|327289387|ref|XP_003229406.1| PREDICTED: replication factor C subunit 2-like [Anolis
carolinensis]
Length = 329
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 96/149 (64%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI
Sbjct: 30 DTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDA-VLELNASNDRGI 88
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 89 DVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 148
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC R+ L +++RL
Sbjct: 149 SDKIIEPIQSRCAVLRYSKLTDGQVLARL 177
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 119/270 (44%), Gaps = 74/270 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 14 VEKYRPLKLSEIVGNEDTVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 66
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 67 ALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 126
Query: 220 NALRRKLPV--------------------------------------------------- 228
ALRR + +
Sbjct: 127 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQVLARLMKIVEKENV 186
Query: 229 --TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
T DG +AII + GDMR+ LN LQS + VN + V+ P + +L
Sbjct: 187 QYTDDGLEAIIFTAQGDMRQALNNLQSTHSGFG-FVNSENVFKVCDEPHPLLVKEMLGHC 245
Query: 287 LNESMDLCYKINRFIDENELPHL--LFYGP 314
++ ++D YKI L HL L Y P
Sbjct: 246 VSANIDEAYKI--------LAHLWKLGYSP 267
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L +++RL ++E+E V T DG
Sbjct: 133 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLTDGQVLARLMKIVEKENVQYTDDG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + VN + +F + ++ P + E++ H
Sbjct: 193 LEAIIFTAQGDMRQALNNLQSTHSGFG-FVNSENVFKV----CDEPHPLLVKEMLGHCVS 247
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+DII T ++ E + ++ + ++ ++A G +
Sbjct: 248 ANIDEAYKILAHLWKLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVN 307
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 308 SLLQMAGLLA 317
>gi|32451662|gb|AAH54598.1| Rfc4 protein [Danio rerio]
Length = 202
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 92/125 (73%), Gaps = 7/125 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+LY + VLELNASD+RGI +VR+
Sbjct: 57 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPDLYRQRVLELNASDERGIQVVRE 116
Query: 357 QIFQF-----ASTKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ +F A T+ K+ +K+IILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 117 KVKRFAQLTVAGTRPDGKTCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICN 176
Query: 410 YLSKI 414
Y+S++
Sbjct: 177 YVSRL 181
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 25/141 (17%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 33 VPWVEKYRPKCVDEVAFQEEVVAVLK--------KSLEGADLPNLLFYGPPGTGKTSTIL 84
Query: 160 AAFNSARD-------KLEVLELNASDDRGIGIVRDQIFQFA-----STKTMHKSS--YKL 205
AA AR+ + VLELNASD+RGI +VR+++ +FA T+ K+ +K+
Sbjct: 85 AA---ARELYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCPPFKI 141
Query: 206 IILDEADAMTNDAQNALRRKL 226
IILDEAD+MT+ AQ ALRR +
Sbjct: 142 IILDEADSMTSAAQAALRRTM 162
>gi|384475811|ref|NP_001245051.1| replication factor C subunit 2 [Macaca mulatta]
gi|402863243|ref|XP_003895940.1| PREDICTED: replication factor C subunit 2 isoform 1 [Papio anubis]
gi|355560573|gb|EHH17259.1| hypothetical protein EGK_13612 [Macaca mulatta]
gi|355761341|gb|EHH61789.1| hypothetical protein EGM_19875 [Macaca fascicularis]
gi|383420507|gb|AFH33467.1| replication factor C subunit 2 isoform 1 [Macaca mulatta]
gi|384948612|gb|AFI37911.1| replication factor C subunit 2 isoform 1 [Macaca mulatta]
gi|387542032|gb|AFJ71643.1| replication factor C subunit 2 isoform 1 [Macaca mulatta]
Length = 352
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI
Sbjct: 53 DTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDA-VLELNASNDRGI 111
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 112 DVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 171
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC R+ L + I++RL
Sbjct: 172 SDKIIEPIQSRCAVLRYTKLTDAQILARL 200
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 120/267 (44%), Gaps = 72/267 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 89
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 90 ALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 149
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR ++
Sbjct: 150 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLMNVIEKERV 209
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P T DG +AII + GDMR+ LN LQS + +N + V+ P + +++
Sbjct: 210 PYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKVCDEPHPLLVKEMIQHC 268
Query: 287 LNESMDLCYKINRFIDENELPHLLFYG 313
+N ++D YKI L HL G
Sbjct: 269 VNANIDEAYKI--------LAHLWHLG 287
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + I++RL VIE+E+V T DG
Sbjct: 156 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLMNVIEKERVPYTDDG 215
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 216 LEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKV----CDEPHPLLVKEMIQHCVN 270
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+DII T ++ E + ++ + ++ ++A G +
Sbjct: 271 ANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVN 330
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 331 SLLQMAGLLA 340
>gi|449479988|ref|XP_002192040.2| PREDICTED: replication factor C subunit 2-like [Taeniopygia
guttata]
Length = 409
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 103/160 (64%), Gaps = 6/160 (3%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI
Sbjct: 207 DTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDA-VLELNASNDRGI 265
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 266 DVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 325
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISF 446
KI IQSRC R+ L + I++RL + +D+++
Sbjct: 326 SDKIIEPIQSRCAVLRYTKLTDAQILARLLKIVEKEDVAY 365
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 77/128 (60%), Gaps = 10/128 (7%)
Query: 102 RVEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
RVEKYRP L E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 190 RVEKYRPMKLSEIVGNEDTVSRLEVFAKEGNVPNIIIAGP-------PGTGKTTSILCLA 242
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDA 218
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ A
Sbjct: 243 RALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGA 302
Query: 219 QNALRRKL 226
Q ALRR +
Sbjct: 303 QQALRRTM 310
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + I++RL ++E+E V T DG
Sbjct: 310 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLKIVEKEDVAYTDDG 369
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
+AII + GDMR+ LN LQS + +N + +F +
Sbjct: 370 LEAIIFTAQGDMRQALNNLQSTYSGFG-FINSENVFKV 406
>gi|115655395|ref|XP_790650.2| PREDICTED: replication factor C subunit 2-like [Strongylocentrotus
purpuratus]
Length = 352
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/145 (47%), Positives = 93/145 (64%), Gaps = 2/145 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F E +P+++ GPPGTGKTT+IL AR + A F VLE+NAS++RGI +VR
Sbjct: 56 RLEVFSREGNVPNVIIAGPPGTGKTTSILCLARTMLG-ASFKDAVLEMNASNERGIDVVR 114
Query: 356 DQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
++I FA K T+ K +K+IILDEAD+MT AQ A+RR +E F+ RF + CN KI
Sbjct: 115 NKIKMFAQKKVTLPKGRHKIIILDEADSMTGAAQQAMRRTMEVFSKTTRFALACNASDKI 174
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC R+ L S I+ RL
Sbjct: 175 IEPIQSRCAVLRYSRLSDSQILKRL 199
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 10/129 (7%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP++L ++V +++ +S +E+ E + ++++ GT + + L
Sbjct: 36 VEKYRPTSLSDVVGNEETVSRLEVFSREGNVPNVIIAG-------PPGTGKTTSILCLAR 88
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLE+NAS++RGI +VR++I FA K T+ K +K+IILDEAD+MT AQ
Sbjct: 89 TMLGASFKDAVLEMNASNERGIDVVRNKIKMFAQKKVTLPKGRHKIIILDEADSMTGAAQ 148
Query: 220 NALRRKLPV 228
A+RR + V
Sbjct: 149 QAMRRTMEV 157
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 27/186 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ RF + CN KI IQSRC R+ L S I+ RL + E V+ DG
Sbjct: 155 MEVFSKTTRFALACNASDKIIEPIQSRCAVLRYSRLSDSQILKRLLEICAAENVDHAEDG 214
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
+AII + GDMR+ +N LQS + + +F + + S LD V
Sbjct: 215 LEAIIYTAQGDMRQAINNLQSTYAGFGS-ITSENVFKVCDEPHPQLIKSMLDHCVEADID 273
Query: 116 --------------SHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
S DII+ I ++ E + ++ + ++ R+A G + +Q
Sbjct: 274 KAYEIMHHMSHMGYSADDIITNIFRSCKTHQMAEYVKLEFIKEIGMTHMRIAEGVNSILQ 333
Query: 155 LSALIA 160
LS L+A
Sbjct: 334 LSGLLA 339
>gi|390371040|dbj|GAB64921.1| replication factor C subunit 2 [Plasmodium cynomolgi strain B]
Length = 342
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 96/146 (65%), Gaps = 10/146 (6%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA--- 362
+PHL+F+GPPGTGKT+ I A A +L+ + + VLELNASDDRGI +VR++I +
Sbjct: 49 MPHLIFHGPPGTGKTSAINALAHELFGRDNISERVLELNASDDRGINVVREKIKAYTRIS 108
Query: 363 -STKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
S ++ + +KL++LDEAD MT DAQ+ALRRIIE ++ RF +ICNY+ KI
Sbjct: 109 ISKNKINSETNETLPPWKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKIS 168
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
I SRC+ +RF + ++ +L Y
Sbjct: 169 DPIYSRCSCYRFQGIPINIKKEKLLY 194
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 22/136 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD++V + +S ML ++V M + + GT + ++AL
Sbjct: 19 VEKYRPKKLDDIVHQTNAVS-------MLKEVVRTKNMPHLIFHGPPGTGKTSAINALAH 71
Query: 161 AFNSARDKL--EVLELNASDDRGIGIVRDQIFQFA----STKTMHKSS------YKLIIL 208
RD + VLELNASDDRGI +VR++I + S ++ + +KL++L
Sbjct: 72 EL-FGRDNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWKLVVL 130
Query: 209 DEADAMTNDAQNALRR 224
DEAD MT DAQ+ALRR
Sbjct: 131 DEADMMTEDAQSALRR 146
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 91/190 (47%), Gaps = 26/190 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RF +ICNY+ KI+ I SRC+ +RF + ++ +L Y+ + E +N+ D
Sbjct: 148 IEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKEKLLYICKSEGINILDDA 207
Query: 61 KKAIIDLSDGDMRKVLNILQ---------------SAATAHADEVNEDTIFTLLVSRVEK 105
II+ + GD+R+ ++ILQ + AD++ I + ++
Sbjct: 208 LGKIIETTQGDLRRAVSILQLCSCIDPMITLESVLDVSGLPADDIISKIIDACKMKDLKN 267
Query: 106 YRPSTLDELVSHQDI-----------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
+ D + D+ + E +S+ ++L++S +YRL +G ++ IQ
Sbjct: 268 VEKAVQDIIEDGYDVAYIFKSLNNYFVMNTEYQDSVKSQILLELSRHDYRLHSGATKYIQ 327
Query: 155 LSALIAAFNS 164
L + ++ +S
Sbjct: 328 LMSFASSVHS 337
>gi|354484828|ref|XP_003504588.1| PREDICTED: replication factor C subunit 2-like [Cricetulus griseus]
Length = 325
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI
Sbjct: 26 DTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDA-VLELNASNDRGI 84
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 85 DVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 144
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC R+ L + +++RL
Sbjct: 145 SDKIIEPIQSRCAVLRYTKLTDAQVLTRL 173
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 121/268 (45%), Gaps = 72/268 (26%)
Query: 102 RVEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
RVEKYRP LDE+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 9 RVEKYRPIKLDEIVGNEDTVSRLEVFAKEGNVPNIIIAGP-------PGTGKTTSILCLA 61
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDA 218
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ A
Sbjct: 62 RALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGA 121
Query: 219 QNALRR-----------------------------------------------------K 225
Q ALRR K
Sbjct: 122 QQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEK 181
Query: 226 LPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
+P T DG +AII + GDMR+ LN LQS + +N + V+ P + +++
Sbjct: 182 VPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFG-YINSENVFKVCDEPHPLLVKEMIQH 240
Query: 286 LLNESMDLCYKINRFIDENELPHLLFYG 313
++ ++D YKI L HL G
Sbjct: 241 CVDANIDEAYKI--------LAHLWHLG 260
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + +++RL VIE+EKV T DG
Sbjct: 129 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDG 188
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 189 LEAIIFTAQGDMRQALNNLQSTFSGFG-YINSENVFKV----CDEPHPLLVKEMIQHCVD 243
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+DIIS T + E + ++ + ++ ++A G +
Sbjct: 244 ANIDEAYKILAHLWHLGYSPEDIISNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVN 303
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 304 SLLQMAGLLA 313
>gi|351707100|gb|EHB10019.1| Replication factor C subunit 4 [Heterocephalus glaber]
Length = 361
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 116/198 (58%), Gaps = 16/198 (8%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA A++L+ F + VLELN S +RGI +VR+
Sbjct: 94 LKKSLEGADLPNLLFYGPPGTGKTSTILAAAQELFGPELFRSRVLELNGSGERGIQVVRE 153
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALR +E+ T +RF CN
Sbjct: 154 KVKNFAQLAVPGSRSDGKPCPPFKVVILDEADSMTSAAQAALRYTMEESKT-IRF---CN 209
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+++I + SRC++FRF PL + RL +++ N I Y +K+ E + K
Sbjct: 210 YVNRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISNEGIAYLVKVSEGDLRKA 269
Query: 465 LALTDILTEISLLVHRLE 482
+ L S +LE
Sbjct: 270 ITLQSATQVTSGSFDKLE 287
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 20/135 (14%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKY P +DE V+ Q++++ ++ L+ +D+ L G + S ++
Sbjct: 71 VPWVEKYHPKCVDE-VAFQEVVAVLK--------KSLEGADLPNLLFYGPPGTGKTSTIL 121
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F + VLELN S +RGI +VR+++ FA S +K++IL
Sbjct: 122 AAAQELFGPELFRSRVLELNGSGERGIQVVREKVKNFAQLAVPGSRSDGKPCPPFKVVIL 181
Query: 209 DEADAMTNDAQNALR 223
DEAD+MT+ AQ ALR
Sbjct: 182 DEADSMTSAAQAALR 196
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 85/167 (50%), Gaps = 28/167 (16%)
Query: 5 TTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAI 64
+ +RFC NY+++I + SRC++FRF PL + RL + ++E V ++ +G +
Sbjct: 202 SKTIRFC---NYVNRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISNEGIAYL 258
Query: 65 IDLSDGDMRKVLNILQSAATAHADE-----------VNEDTIFTLLVSRVEKYRPSTLDE 113
+ +S+GD+RK + LQSA + +NE T LV++V D
Sbjct: 259 VKVSEGDLRKAIT-LQSATQVTSGSFDKLEAVVKNLINEGHAATQLVNQVR-------DA 310
Query: 114 LVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+V + ++ + +S++ + K+++ LA G E +QL +L A
Sbjct: 311 IVENDNL---SDKQKSIMTE---KLAEDGKCLADGADEHLQLISLCA 351
>gi|417399418|gb|JAA46724.1| Putative replication factor c subunit 2 [Desmodus rotundus]
Length = 350
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI
Sbjct: 51 DTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGSALKDA-VLELNASNDRGI 109
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ + +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 110 DVVRNKIKMFAQQKVTLPRGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 169
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC R+ L + I++RL
Sbjct: 170 SDKIIEPIQSRCAVLRYTKLTDAQILARL 198
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 119/267 (44%), Gaps = 72/267 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 35 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 87
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A + K VLELNAS+DRGI +VR++I FA K T+ + +K+IILDEAD+MT+ AQ
Sbjct: 88 ALLGSALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIILDEADSMTDGAQ 147
Query: 220 NALRRKLPV--------------------------------------------------- 228
ALRR + +
Sbjct: 148 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLTVIEKEKV 207
Query: 229 --TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
T DG +AII + GDMR+ LN LQS + +N + V+ P + +++
Sbjct: 208 QHTDDGLEAIIFTAQGDMRQALNNLQSTFSGFG-FINSENVFKVCDEPHPLLVKEMIQHC 266
Query: 287 LNESMDLCYKINRFIDENELPHLLFYG 313
+N +D YKI L HL G
Sbjct: 267 VNADIDGAYKI--------LAHLWHLG 285
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + I++RL VIE+EKV T DG
Sbjct: 154 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLTVIEKEKVQHTDDG 213
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 214 LEAIIFTAQGDMRQALNNLQSTFSGFG-FINSENVFKV----CDEPHPLLVKEMIQHCVN 268
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+DII T ++ E + ++ + ++ ++A G +
Sbjct: 269 ADIDGAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVN 328
Query: 151 EKIQLSALIA 160
+Q+S L+A
Sbjct: 329 SLLQMSGLLA 338
>gi|348568402|ref|XP_003469987.1| PREDICTED: replication factor C subunit 2-like [Cavia porcellus]
Length = 352
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI
Sbjct: 53 DTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAMKDA-VLELNASNDRGI 111
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ + +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 112 DVVRNKIKMFAQQKVTLPRGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 171
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC R+ L + +++RL
Sbjct: 172 SDKIIEPIQSRCAVLRYTKLTDAQVLARL 200
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 119/267 (44%), Gaps = 72/267 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 37 VEKYRPIKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 89
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ + +K+IILDEAD+MT+ AQ
Sbjct: 90 ALLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIILDEADSMTDGAQ 149
Query: 220 NALRRKL----------------------------------------------------- 226
ALRR +
Sbjct: 150 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLLSVIEKEAV 209
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P T DG +AII + GDMR+ LN LQS + +N + V+ P + +++
Sbjct: 210 PYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKVCDEPHPLLVKEMIQHC 268
Query: 287 LNESMDLCYKINRFIDENELPHLLFYG 313
++ ++D YKI L HL G
Sbjct: 269 VSANIDDAYKI--------LAHLWHLG 287
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + +++RL VIE+E V T DG
Sbjct: 156 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLARLLSVIEKEAVPYTDDG 215
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 216 LEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKV----CDEPHPLLVKEMIQHCVS 270
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+DII T ++ E + ++ + ++ R+A G +
Sbjct: 271 ANIDDAYKILAHLWHLGYSPEDIIGNVFRVCKTFQMAEYLKLEFIKEIGYTHMRVAEGVN 330
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 331 SLLQMAGLLA 340
>gi|426255304|ref|XP_004021294.1| PREDICTED: replication factor C subunit 2 [Ovis aries]
Length = 403
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI
Sbjct: 104 DTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDA-VLELNASNDRGI 162
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 163 DVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 222
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC R+ L + I++RL
Sbjct: 223 SDKIIEPIQSRCAVLRYTKLTDAQILARL 251
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 121/272 (44%), Gaps = 72/272 (26%)
Query: 98 LLVSRVEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
L +RVEKYRP L+E+V ++D +S +E+ E + ++++ GT + +
Sbjct: 83 FLKNRVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSI 135
Query: 156 SALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAM 214
L A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+M
Sbjct: 136 LCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSM 195
Query: 215 TNDAQNALRR-------------------------------------------------- 224
T+ AQ ALRR
Sbjct: 196 TDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLSVI 255
Query: 225 ---KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITN 281
K+ T DG +AII + GDMR+ LN LQS + +N + V+ P +
Sbjct: 256 EKEKVQYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGF-INSENVFKVCDEPHPLLVKE 314
Query: 282 ILRWLLNESMDLCYKINRFIDENELPHLLFYG 313
+++ ++ +D YKI L HL G
Sbjct: 315 MIQHCVSADIDEAYKI--------LAHLWHLG 338
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 92/190 (48%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + I++RL VIE+EKV T DG
Sbjct: 207 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLSVIEKEKVQYTDDG 266
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 267 LEAIIFTAQGDMRQALNNLQSTYSGFGF-INSENVFKV----CDEPHPLLVKEMIQHCVS 321
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+DIIS T ++ E + ++ + ++ ++A G +
Sbjct: 322 ADIDEAYKILAHLWHLGYSPEDIISNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVN 381
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 382 SLLQMAGLLA 391
>gi|290986773|ref|XP_002676098.1| predicted protein [Naegleria gruberi]
gi|284089698|gb|EFC43354.1| predicted protein [Naegleria gruberi]
Length = 337
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 95/139 (68%), Gaps = 1/139 (0%)
Query: 302 DENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQF 361
+E +P+L+ GPPGTGKTT+I+ AR L K + VLELNASD+R + +VR++I QF
Sbjct: 46 EEGNMPNLILSGPPGTGKTTSIMCLARSLLGKEVYKEAVLELNASDERTLDVVRNKIKQF 105
Query: 362 ASTKT-MHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQS 420
A K + + +K++ILDEAD+MT+ AQ A+RRI+E +++ RF + CN SKI IQS
Sbjct: 106 AQKKVNLPPNRHKIVILDEADSMTSAAQQAMRRIMEIYSSTTRFALACNDSSKIIEPIQS 165
Query: 421 RCTRFRFGPLDSSLIMSRL 439
RC R+ L + +++RL
Sbjct: 166 RCALVRYKRLTDAELLTRL 184
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +++ RF + CN SKI IQSRC R+ L + +++RL + E E V T DG
Sbjct: 140 MEIYSSTTRFALACNDSSKIIEPIQSRCALVRYKRLTDAELLTRLIVICELEHVQKTEDG 199
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA-----------DEVNEDTIFTLLVSRVEKYRPS 109
++I+ SDGDMR +N LQ+ D+ + I T++ S ++ S
Sbjct: 200 LESILYTSDGDMRNAINSLQATYQGFGIVNATNVFKVCDQPHPVAIQTIIGSCIQGDLMS 259
Query: 110 TLDELV-------SHQDIIST---------IEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ EL S QD+IST +++PE + + ++ D R++ G +
Sbjct: 260 SQKELTKLMGEGYSSQDVISTLSKVVRSGAVQMPEYAQLQFIKEIGDCHLRISDGVDTPL 319
Query: 154 QLSALIA 160
QL+AL+A
Sbjct: 320 QLTALLA 326
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 101/238 (42%), Gaps = 65/238 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VE+YRP +D++V +++ + + + E + +L+L GT + + L
Sbjct: 20 VERYRPIDMDDIVGNEEAVMRLRVIAEEGNMPNLILSG-------PPGTGKTTSIMCLAR 72
Query: 161 AF-NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKT-MHKSSYKLIILDEADAMTNDA 218
+ K VLELNASD+R + +VR++I QFA K + + +K++ILDEAD+MT+ A
Sbjct: 73 SLLGKEVYKEAVLELNASDERTLDVVRNKIKQFAQKKVNLPPNRHKIVILDEADSMTSAA 132
Query: 219 QNALRRKLPV-------------------------------------------------- 228
Q A+RR + +
Sbjct: 133 QQAMRRIMEIYSSTTRFALACNDSSKIIEPIQSRCALVRYKRLTDAELLTRLIVICELEH 192
Query: 229 ---TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
T DG ++I+ SDGDMR +N LQ+ VN V+ P I I+
Sbjct: 193 VQKTEDGLESILYTSDGDMRNAINSLQATYQGFGI-VNATNVFKVCDQPHPVAIQTII 249
>gi|313217116|emb|CBY38291.1| unnamed protein product [Oikopleura dioica]
gi|313225063|emb|CBY20856.1| unnamed protein product [Oikopleura dioica]
Length = 326
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 91/141 (64%), Gaps = 2/141 (1%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
F E LP+++ GPPG GKTT+IL AR + + FN VLELNAS+DRGI +VR++I
Sbjct: 36 FAKEGNLPNIIIAGPPGCGKTTSILCLARTMLGE-HFNEAVLELNASNDRGIDVVRNKIK 94
Query: 360 QFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418
FA K T+ +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN KI I
Sbjct: 95 MFAQKKCTLPAGKHKIIILDEADSMTSGAQQALRRTMEIYSKTTRFALACNNSEKIIEPI 154
Query: 419 QSRCTRFRFGPLDSSLIMSRL 439
QSRC RF L +++R+
Sbjct: 155 QSRCAVLRFSKLSDVQVLARI 175
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 75/132 (56%), Gaps = 16/132 (12%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSA--- 157
VEKYRP+ + ++ +Q+ + + + E L ++++ G + I A
Sbjct: 12 VEKYRPTFMSDIAGNQETVERLAVFAKEGNLPNIIIAGPP-----GCGKTTSILCLARTM 66
Query: 158 LIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTN 216
L FN A VLELNAS+DRGI +VR++I FA K T+ +K+IILDEAD+MT+
Sbjct: 67 LGEHFNEA-----VLELNASNDRGIDVVRNKIKMFAQKKCTLPAGKHKIIILDEADSMTS 121
Query: 217 DAQNALRRKLPV 228
AQ ALRR + +
Sbjct: 122 GAQQALRRTMEI 133
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 27/186 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC RF L +++R+ VI+ E V+ G
Sbjct: 131 MEIYSKTTRFALACNNSEKIIEPIQSRCAVLRFSKLSDVQVLARITEVIKHENVDYDQKG 190
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT-------LLVSRV------EKYR 107
+AI+ + GDMR+ LN LQ A + VN D +F L++S++ K
Sbjct: 191 LEAILFTAQGDMRQALNNLQ-ATHSGLGVVNSDNVFKVCDEPHPLMISKMLDFCLERKTN 249
Query: 108 PST--LDELVSH----QDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
+T + +L ++ +DII+T+ + PE + ++ + ++ R+ GT+ +Q
Sbjct: 250 EATGIIRQLYNYGYACEDIITTVFRVSKTHKSPELIKLEWIKQIGLAHMRIIEGTTTLVQ 309
Query: 155 LSALIA 160
L L++
Sbjct: 310 LIGLVS 315
>gi|297837097|ref|XP_002886430.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
lyrata]
gi|297332271|gb|EFH62689.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
lyrata]
Length = 334
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 91/138 (65%), Gaps = 2/138 (1%)
Query: 303 ENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362
+ +P+L+ GPPGTGKTT+ILA A +L + VLELNASDDRGI +VR++I FA
Sbjct: 46 DGNMPNLILSGPPGTGKTTSILALAHELLG-PNYKEAVLELNASDDRGIDVVRNKIKMFA 104
Query: 363 STK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSR 421
K T+ +K++ILDEAD+MT+ AQ ALRR IE ++ + RF + CN SKI IQSR
Sbjct: 105 QKKVTLPPGRHKVVILDEADSMTSGAQQALRRTIEIYSNSTRFALACNTSSKIIEPIQSR 164
Query: 422 CTRFRFGPLDSSLIMSRL 439
C RF L I+ RL
Sbjct: 165 CALVRFSRLSDQQILGRL 182
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 118/262 (45%), Gaps = 65/262 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS + ++V ++D +S +++ + + +L+L GT + + AL
Sbjct: 19 VEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGP-------PGTGKTTSILALAH 71
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
K VLELNASDDRGI +VR++I FA K T+ +K++ILDEAD+MT+ AQ
Sbjct: 72 ELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQ 131
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR +
Sbjct: 132 QALRRTIEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQQILGRLLVVVEAENV 191
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P P+G +AII +DGDMR+ LN LQ+ + VN++ V+ P + NI+R +
Sbjct: 192 PYVPEGLEAIIFTADGDMRQALNNLQATFSGFR-FVNQENVFKVCDQPHPLHVKNIVRNV 250
Query: 287 LNESM-DLCYKINRFIDENELP 307
L D C+ + + D P
Sbjct: 251 LESKFDDACHGLKQLYDLGYSP 272
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 27/193 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ + RF + CN SKI IQSRC RF L I+ RL V+E E V P+G
Sbjct: 138 IEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQQILGRLLVVVEAENVPYVPEG 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------LVSRVEKYRPSTLD 112
+AII +DGDMR+ LN LQ+ + VN++ +F + + + V S D
Sbjct: 198 LEAIIFTADGDMRQALNNLQATFSGFR-FVNQENVFKVCDQPHPLHVKNIVRNVLESKFD 256
Query: 113 ELV-----------SHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
+ S DII+T+ ++ E + ++ + + R+ G +Q
Sbjct: 257 DACHGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQ 316
Query: 155 LSALIAAFNSARD 167
L L+A + AR+
Sbjct: 317 LCGLLAKLSIARE 329
>gi|190346599|gb|EDK38722.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 256
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/101 (63%), Positives = 76/101 (75%)
Query: 339 MVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF 398
MVLELNASDDRGI +VR++I FAST + +KLIILDEAD+MT AQN+LRRIIEK+
Sbjct: 1 MVLELNASDDRGIDVVRNEIKNFASTMQIFSRGFKLIILDEADSMTAVAQNSLRRIIEKY 60
Query: 399 TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
T N RFCI+ NY K+ PA+ SRCTRFRF P+ S I L
Sbjct: 61 TKNTRFCILANYSHKLNPALISRCTRFRFHPISESAIKENL 101
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 105/195 (53%), Gaps = 30/195 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T N RFCI+ NY K+ PA+ SRCTRFRF P+ S I L VI +E +++ P
Sbjct: 57 IEKYTKNTRFCILANYSHKLNPALISRCTRFRFHPISESAIKENLQPVIVKEHLSIQPSA 116
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA---HADEVNEDTIFTLL------------------ 99
A++ LS GDMRK LN+LQ+ + DE++E I+ L
Sbjct: 117 VDALLRLSKGDMRKALNVLQACKASLSKDGDEIDETMIYDCLGAPQPQDIEGALDSILKD 176
Query: 100 --------VSRVEKYRPSTLDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+ +++K + L +L+S +I++ E+ + +D++ +S++EY +A G +
Sbjct: 177 EWTTAYLTIEKLKKQKGLALIDLISGIVEILNNYELKPATRIDILKGLSEVEYGIARGGN 236
Query: 151 EKIQLSALIAAFNSA 165
+KIQ SA++ A
Sbjct: 237 DKIQSSAIVGVIKEA 251
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 81/181 (44%), Gaps = 56/181 (30%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRR------ 224
VLELNASDDRGI +VR++I FAST + +KLIILDEAD+MT AQN+LRR
Sbjct: 2 VLELNASDDRGIDVVRNEIKNFASTMQIFSRGFKLIILDEADSMTAVAQNSLRRIIEKYT 61
Query: 225 -----------------------------------------------KLPVTPDGKKAII 237
L + P A++
Sbjct: 62 KNTRFCILANYSHKLNPALISRCTRFRFHPISESAIKENLQPVIVKEHLSIQPSAVDALL 121
Query: 238 DLSDGDMRKVLNILQSAATA---HADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLC 294
LS GDMRK LN+LQ+ + DE++E +Y+ +G P +I L +L +
Sbjct: 122 RLSKGDMRKALNVLQACKASLSKDGDEIDETMIYDCLGAPQPQDIEGALDSILKDEWTTA 181
Query: 295 Y 295
Y
Sbjct: 182 Y 182
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 47/70 (67%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
Y+ I+++K +KGLAL D+++ I +++ E+ + +D++ +S++EY +A G ++KIQ
Sbjct: 182 YLTIEKLKKQKGLALIDLISGIVEILNNYELKPATRIDILKGLSEVEYGIARGGNDKIQS 241
Query: 513 SALIAAFNSA 522
SA++ A
Sbjct: 242 SAIVGVIKEA 251
>gi|355571949|ref|ZP_09043157.1| Replication factor C small subunit [Methanolinea tarda NOBI-1]
gi|354825045|gb|EHF09280.1| Replication factor C small subunit [Methanolinea tarda NOBI-1]
Length = 321
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 90/140 (64%), Gaps = 1/140 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
+++ ++ LPHLLF G G GKTT +A AR+ + K ++ ELNASD+RGI +VR
Sbjct: 29 RLSSYVRTGNLPHLLFTGSAGVGKTTAAVALAREFF-KDSWHMNFRELNASDERGIDVVR 87
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+QI QFA T + + +K++ LDEADA+T DAQ ALRR +E + + RF + CNY S+I
Sbjct: 88 NQIKQFARTSPLGGAGFKILFLDEADALTPDAQAALRRTMESYASTCRFILSCNYSSRII 147
Query: 416 PAIQSRCTRFRFGPLDSSLI 435
IQSRC +RF L I
Sbjct: 148 DPIQSRCAIYRFRSLSPEAI 167
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 99/236 (41%), Gaps = 63/236 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP L ++V I+ + + L L+ S AG + AL
Sbjct: 9 IEKYRPVRLADIVGQDQIVERLSSYVRTGNLPHLLFTGS-------AGVGKTTAAVALAR 61
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
F + ELNASD+RGI +VR+QI QFA T + + +K++ LDEADA+T DAQ
Sbjct: 62 EFFKDSWHMNFRELNASDERGIDVVRNQIKQFARTSPLGGAGFKILFLDEADALTPDAQA 121
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR KL
Sbjct: 122 ALRRTMESYASTCRFILSCNYSSRIIDPIQSRCAIYRFRSLSPEAITKEILRIAENEKLT 181
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
+T + AII+++ GDMRK +N LQ AA + E+ D VY EI ++L
Sbjct: 182 ITGEAIDAIIEIAQGDMRKAINALQGAAIL-SPEITGDMVYAITATARPDEIEDLL 236
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 94/189 (49%), Gaps = 28/189 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + + RF + CNY S+I IQSRC +RF L I + + E EK+ +T +
Sbjct: 127 MESYASTCRFILSCNYSSRIIDPIQSRCAIYRFRSLSPEAITKEILRIAENEKLTITGEA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAA----------------TAHADEVNEDTIFTLL----- 99
AII+++ GDMRK +N LQ AA TA DE+ ED + T L
Sbjct: 187 IDAIIEIAQGDMRKAINALQGAAILSPEITGDMVYAITATARPDEI-EDLLSTSLSGDFE 245
Query: 100 -----VSRVEKYRPSTLDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ R+ R +EL++ ++ ++ E M V L+ ++ ++RL+ G S I
Sbjct: 246 GATAILHRLLNDRGIAPNELINQCYRALTRRDMEEDMRVALIDQLGTTDFRLSEGASSDI 305
Query: 154 QLSALIAAF 162
Q+ A+IA F
Sbjct: 306 QMEAMIARF 314
>gi|296192221|ref|XP_002743970.1| PREDICTED: replication factor C subunit 2 isoform 1 [Callithrix
jacchus]
Length = 352
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI
Sbjct: 53 DTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDA-VLELNASNDRGI 111
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR+++ FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 112 DVVRNKVKMFAQHKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 171
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC R+ L + I++RL
Sbjct: 172 SDKIIEPIQSRCAVLRYTKLTDAQILTRL 200
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 120/267 (44%), Gaps = 72/267 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 89
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR+++ FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 90 ALLGPALKDAVLELNASNDRGIDVVRNKVKMFAQHKVTLPKGRHKIIILDEADSMTDGAQ 149
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR ++
Sbjct: 150 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMSVIEKERV 209
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P T DG +AII + GDMR+ LN LQS + +N + V+ P + +++
Sbjct: 210 PHTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKVCDEPHPLLVKEMIQHC 268
Query: 287 LNESMDLCYKINRFIDENELPHLLFYG 313
+N ++D YKI L HL G
Sbjct: 269 VNANIDEAYKI--------LAHLWHLG 287
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + I++RL VIE+E+V T DG
Sbjct: 156 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMSVIEKERVPHTDDG 215
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 216 LEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKV----CDEPHPLLVKEMIQHCVN 270
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+DII T ++ E + ++ + ++ ++A G +
Sbjct: 271 ANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVN 330
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 331 SLLQMAGLLA 340
>gi|413919223|gb|AFW59155.1| hypothetical protein ZEAMMB73_461194 [Zea mays]
Length = 188
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 92/138 (66%), Gaps = 2/138 (1%)
Query: 303 ENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362
+ +P+L+ GPPGTGKTT+ILA A +L + +A VLELNASDDRG+ +VR++I FA
Sbjct: 43 DGNMPNLILSGPPGTGKTTSILALAHELLGPSYRDA-VLELNASDDRGLDVVRNKIKMFA 101
Query: 363 STK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSR 421
K T+ +K++ILDEAD+MT+ AQ ALRR +E ++ RF + CN SKI IQSR
Sbjct: 102 QKKVTLQPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 161
Query: 422 CTRFRFGPLDSSLIMSRL 439
C RF L I+ RL
Sbjct: 162 CAIVRFSRLSDQEILGRL 179
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 10/129 (7%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS + ++V + D ++ +E+ + + +L+L GT + + AL
Sbjct: 16 VEKYRPSRVADVVGNSDAVARLEVIARDGNMPNLILSGP-------PGTGKTTSILALAH 68
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
+ VLELNASDDRG+ +VR++I FA K T+ +K++ILDEAD+MT+ AQ
Sbjct: 69 ELLGPSYRDAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILDEADSMTSGAQ 128
Query: 220 NALRRKLPV 228
ALRR + +
Sbjct: 129 QALRRTMEI 137
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEK 53
+E ++ RF + CN SKI IQSRC RF L I+ RL V+ EK
Sbjct: 135 MEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAEK 187
>gi|294461526|gb|ADE76324.1| unknown [Picea sitchensis]
gi|294463669|gb|ADE77361.1| unknown [Picea sitchensis]
Length = 335
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 91/138 (65%), Gaps = 2/138 (1%)
Query: 303 ENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362
+ +P+L+ GPPGTGKTT+ILA A +L + + V+ELNASDDRGI +VR++I FA
Sbjct: 47 DGNMPNLILAGPPGTGKTTSILALAHELLG-SNYKEGVIELNASDDRGIDVVRNKIKMFA 105
Query: 363 STK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSR 421
K T+ +K+IILDEAD+MT AQ ALRR +E F+ + RF + CN +KI IQSR
Sbjct: 106 QKKVTLPPGRHKIIILDEADSMTGGAQQALRRTMEIFSNSTRFALACNTSAKIIEPIQSR 165
Query: 422 CTRFRFGPLDSSLIMSRL 439
C RF L I+ RL
Sbjct: 166 CAIVRFSKLSDQEILGRL 183
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 117/257 (45%), Gaps = 65/257 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS + ++V +QD +S +++ + + +L+L GT + + AL
Sbjct: 20 VEKYRPSKVSDIVGNQDALSRLQVIARDGNMPNLILAGP-------PGTGKTTSILALAH 72
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
+ K V+ELNASDDRGI +VR++I FA K T+ +K+IILDEAD+MT AQ
Sbjct: 73 ELLGSNYKEGVIELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTGGAQ 132
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR K+
Sbjct: 133 QALRRTMEIFSNSTRFALACNTSAKIIEPIQSRCAIVRFSKLSDQEILGRLMRVVEAEKV 192
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P+G +AII +DGDMR+ LN LQ+ + VN++ V+ P + ++++ +
Sbjct: 193 AYVPEGLEAIIFTADGDMRQALNNLQATYSGF-QFVNQENVFKVCDQPHPLHVKSMVQNV 251
Query: 287 LNESMD-LCYKINRFID 302
L + D C ++ D
Sbjct: 252 LEGNFDEACSRLKNLYD 268
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 94/193 (48%), Gaps = 27/193 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ + RF + CN +KI IQSRC RF L I+ RL V+E EKV P+G
Sbjct: 139 MEIFSNSTRFALACNTSAKIIEPIQSRCAIVRFSKLSDQEILGRLMRVVEAEKVAYVPEG 198
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------LVSRVEKYRPSTLD 112
+AII +DGDMR+ LN LQ+ + VN++ +F + + S V+ D
Sbjct: 199 LEAIIFTADGDMRQALNNLQATYSGF-QFVNQENVFKVCDQPHPLHVKSMVQNVLEGNFD 257
Query: 113 ELVSH-----------QDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
E S DII+T+ ++PE + ++ + + R++ G +Q
Sbjct: 258 EACSRLKNLYDLGYSATDIITTLFRVIKNYDMPEYLKLEFIRETGFAHMRISDGVGSLLQ 317
Query: 155 LSALIAAFNSARD 167
LS L+A + RD
Sbjct: 318 LSGLLAKLSIVRD 330
>gi|344289927|ref|XP_003416692.1| PREDICTED: replication factor C subunit 2-like [Loxodonta africana]
Length = 352
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI
Sbjct: 53 DTVSRLQVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDA-VLELNASNDRGI 111
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ + +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 112 DVVRNKIKMFAQQKVTLPRGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 171
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC R+ L + I++RL
Sbjct: 172 SDKIIEPIQSRCAVLRYTKLTDAQILARL 200
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 118/267 (44%), Gaps = 72/267 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +++ E + ++++ GT + + L
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLQVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 89
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ + +K+IILDEAD+MT+ AQ
Sbjct: 90 ALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPRGRHKIIILDEADSMTDGAQ 149
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR K+
Sbjct: 150 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLMDVIEKEKV 209
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
T DG +AII + GDMR+ LN LQS + +N + V+ P + +++
Sbjct: 210 QCTDDGLEAIIFTAQGDMRQALNNLQSTFSGFG-FINSENVFKVCDEPHPLLVKEMIQRC 268
Query: 287 LNESMDLCYKINRFIDENELPHLLFYG 313
+N +D YKI L HL G
Sbjct: 269 VNADIDEAYKI--------LAHLWHLG 287
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 95/186 (51%), Gaps = 27/186 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + I++RL VIE+EKV T DG
Sbjct: 156 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLMDVIEKEKVQCTDDG 215
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT-------LLVSR-VEKYRPSTLD 112
+AII + GDMR+ LN LQS + +N + +F LLV +++ + +D
Sbjct: 216 LEAIIFTAQGDMRQALNNLQSTFSGFG-FINSENVFKVCDEPHPLLVKEMIQRCVNADID 274
Query: 113 E---LVSH--------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
E +++H +DII T ++ E + ++ + ++ ++ G + +Q
Sbjct: 275 EAYKILAHLWHLGYSSEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIVEGVNSLLQ 334
Query: 155 LSALIA 160
++ L+A
Sbjct: 335 MAGLLA 340
>gi|428671876|gb|EKX72791.1| replication factor C subunit 4, putative [Babesia equi]
Length = 324
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 95/151 (62%), Gaps = 6/151 (3%)
Query: 303 ENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362
E +P+LL GPPGTGKTT++L AR++ AQF + V+ELNASDDRG+ +VR+ I FA
Sbjct: 36 EGNMPNLLLCGPPGTGKTTSVLCLAREMLG-AQFKSGVIELNASDDRGVDVVRESIKNFA 94
Query: 363 STK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSR 421
+ + +K++ILDE D+MT AQ ALRRI+E ++ RF + CN +KI IQSR
Sbjct: 95 KKSLILPPNKHKIVILDEVDSMTEAAQQALRRIMEIYSNTTRFALACNQSTKIIEPIQSR 154
Query: 422 CTRFRFGPLDSSLIMSRL----DYDDISFFN 448
C RF L ++ RL +D+ + N
Sbjct: 155 CAVIRFTKLKDEQVLQRLMDICKLEDLKYTN 185
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 110/250 (44%), Gaps = 64/250 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP +LDE++ + +I ++ E + +L+L GT + + L
Sbjct: 9 IEKYRPGSLDEIIGNPEITKRLQYIAKEGNMPNLLLCGP-------PGTGKTTSVLCLAR 61
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A+ K V+ELNASDDRG+ +VR+ I FA + + +K++ILDE D+MT AQ
Sbjct: 62 EMLGAQFKSGVIELNASDDRGVDVVRESIKNFAKKSLILPPNKHKIVILDEVDSMTEAAQ 121
Query: 220 NALRRKLPV--------------------------------------------------- 228
ALRR + +
Sbjct: 122 QALRRIMEIYSNTTRFALACNQSTKIIEPIQSRCAVIRFTKLKDEQVLQRLMDICKLEDL 181
Query: 229 --TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
T DG +A++ +DGD+R+ +N LQ+ +A D + ++ V+ P+ I +L
Sbjct: 182 KYTNDGMEALLFSADGDLRRAVNNLQN-VSAGFDLITKENVFKVCDIPSPDLIQKMLSDC 240
Query: 287 LNESMDLCYK 296
LN + + ++
Sbjct: 241 LNGNWRMAHE 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 87/186 (46%), Gaps = 27/186 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN +KI IQSRC RF L ++ RL + + E + T DG
Sbjct: 128 MEIYSNTTRFALACNQSTKIIEPIQSRCAVIRFTKLKDEQVLQRLMDICKLEDLKYTNDG 187
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL--------------------- 99
+A++ +DGD+R+ +N LQ+ +A D + ++ +F +
Sbjct: 188 MEALLFSADGDLRRAVNNLQN-VSAGFDLITKENVFKVCDIPSPDLIQKMLSDCLNGNWR 246
Query: 100 -----VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
+ + + S LD +++ + ++ + PE +L++ + ++ + G ++Q
Sbjct: 247 MAHEKAAELLELGHSPLDIIITMRSVLKSFNAPEHVLLEYIKGVALTHMTMVNGLITQLQ 306
Query: 155 LSALIA 160
L L+A
Sbjct: 307 LEKLLA 312
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,584,373,761
Number of Sequences: 23463169
Number of extensions: 295475446
Number of successful extensions: 1122791
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6663
Number of HSP's successfully gapped in prelim test: 5189
Number of HSP's that attempted gapping in prelim test: 1081055
Number of HSP's gapped (non-prelim): 36837
length of query: 533
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 386
effective length of database: 8,910,109,524
effective search space: 3439302276264
effective search space used: 3439302276264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)