BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4285
(533 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40937|RFC5_HUMAN Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1
Length = 340
Score = 232 bits (592), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 111/178 (62%), Positives = 135/178 (75%), Gaps = 11/178 (6%)
Query: 274 PTKTEITNILRWL-------LNE---SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P T+I N L W+ LN+ D+ I +FI+E+ LPHLL YGPPGTGKT+TI
Sbjct: 12 PAATKIRN-LPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTI 70
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
LACA++LY +F +MVLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAM
Sbjct: 71 LACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAM 130
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T DAQNALRR+IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 131 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/194 (46%), Positives = 125/194 (64%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILDWMLNQDFT 260
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ I + P S+ + L+ KM+DIEYRL+ GT+EKI
Sbjct: 261 TAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKI 320
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 321 QLSSLIAAFQVTRD 334
Score = 155 bits (391), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 130/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPP-----GTGKTSTI----LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEE 193
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 252
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 253 WMLNQDFTTAYR 264
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTEI L VHR++ P S+ + L+ KM+DI
Sbjct: 249 NILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI 308
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GT+EKIQLS+LIAAF RD
Sbjct: 309 EYRLSVGTNEKIQLSSLIAAFQVTRD 334
>sp|Q9D0F6|RFC5_MOUSE Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=2 SV=1
Length = 339
Score = 231 bits (590), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 38 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 97
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 98 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 157
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 158 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 187
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 124/194 (63%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+++E V+++ DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 200
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
KA++ LS GDMR+ LNILQS A +V E+T++T ++ + LD +++
Sbjct: 201 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANILDWMLNQDFT 259
Query: 118 -----------------QDIISTIEI-------PESMLVDLVLKMSDIEYRLAAGTSEKI 153
DI++ + + P S+ + L+ KM+DIEYRL+ GTSEKI
Sbjct: 260 TAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKI 319
Query: 154 QLSALIAAFNSARD 167
QLS+LIAAF RD
Sbjct: 320 QLSSLIAAFQVTRD 333
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/252 (42%), Positives = 129/252 (51%), Gaps = 68/252 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL +L+SHQDI+STI+ I E L L+L G + I L
Sbjct: 22 VEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPP-----GTGKTSTI----LAC 72
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 73 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 132
Query: 218 AQNALRRKL---------------------------------PVTP-------------- 230
AQNALRR + P+TP
Sbjct: 133 AQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEE 192
Query: 231 ------DGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P KT+I NIL
Sbjct: 193 NVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANILD 251
Query: 285 WLLNESMDLCYK 296
W+LN+ YK
Sbjct: 252 WMLNQDFTTAYK 263
Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 59/86 (68%), Gaps = 9/86 (10%)
Query: 448 NIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
NI+ W Y I E+K KGLAL DILTE+ L VHR++ P S+ + L+ KM+DI
Sbjct: 248 NILDWMLNQDFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADI 307
Query: 499 EYRLAAGTSEKIQLSALIAAFNSARD 524
EYRL+ GTSEKIQLS+LIAAF RD
Sbjct: 308 EYRLSVGTSEKIQLSSLIAAFQVTRD 333
>sp|O14003|RFC3_SCHPO Replication factor C subunit 3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc3 PE=1 SV=2
Length = 342
Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/296 (44%), Positives = 174/296 (58%), Gaps = 64/296 (21%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + +FI N +PH+LFYGPPGTGKT+TILACARK+Y + ++ELNASDDRGI
Sbjct: 42 DIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYG-PNYRNQLMELNASDDRGI 100
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
VR+QI FAST+ + S++K+IILDEADAMT AQNALRR+IEK+T NVRFCIICNY+
Sbjct: 101 DAVREQIKNFASTRQIFASTFKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYI 160
Query: 412 SKIPPAIQSRCTRFRFGPL----------------------DSSLIMSRLD--------- 440
+KI PAIQSRCTRFRF PL D+ + + RL
Sbjct: 161 NKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDMRKALN 220
Query: 441 --------YD-----------------DISFF-------NIIIWYIKIQEIKIEKGLALT 468
YD DI +F +I + I IK +KGLAL
Sbjct: 221 ILQACHAAYDHIDVSAIYNCVGHPHPSDIDYFLKSIMNDEFVIAFNTISSIKQQKGLALQ 280
Query: 469 DILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
DILT I + LEI + + ++ +++ IE+R++ G SEKIQLSA+IA+ + D
Sbjct: 281 DILTCIFEALDELEIKPNAKIFILDQLATIEHRMSFGCSEKIQLSAMIASIKTGVD 336
Score = 139 bits (350), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/194 (41%), Positives = 117/194 (60%), Gaps = 28/194 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNY++KI+PAIQSRCTRFRF PL I +D+VI+ E N+ PD
Sbjct: 144 IEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDA 203
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL----VSRVEKYRPSTL-DELV 115
K A++ LS GDMRK LNILQ+ A+ D ++ I+ + S ++ + S + DE V
Sbjct: 204 KMAVLRLSKGDMRKALNILQACHAAY-DHIDVSAIYNCVGHPHPSDIDYFLKSIMNDEFV 262
Query: 116 ---------------SHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ QDI++ I EI + + ++ +++ IE+R++ G SEKI
Sbjct: 263 IAFNTISSIKQQKGLALQDILTCIFEALDELEIKPNAKIFILDQLATIEHRMSFGCSEKI 322
Query: 154 QLSALIAAFNSARD 167
QLSA+IA+ + D
Sbjct: 323 QLSAMIASIKTGVD 336
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 124/247 (50%), Gaps = 61/247 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE-IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
VEKYRP+ L+++VSH+DIIST+E S V +L + GT + + A
Sbjct: 26 VEKYRPANLEDVVSHKDIISTLEKFISSNRVPHML------FYGPPGTGKTSTILACARK 79
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ +++ELNASDDRGI VR+QI FAST+ + S++K+IILDEADAMT AQNA
Sbjct: 80 IYGPNYRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAMTLAAQNA 139
Query: 222 LRR-----------------------------------KLP------------------V 228
LRR LP +
Sbjct: 140 LRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNI 199
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
PD K A++ LS GDMRK LNILQ+ A+ D ++ +YN VG+P ++I L+ ++N
Sbjct: 200 DPDAKMAVLRLSKGDMRKALNILQACHAAY-DHIDVSAIYNCVGHPHPSDIDYFLKSIMN 258
Query: 289 ESMDLCY 295
+ + +
Sbjct: 259 DEFVIAF 265
>sp|P34429|RFC5_CAEEL Probable replication factor C subunit 5 OS=Caenorhabditis elegans
GN=F44B9.8 PE=3 SV=3
Length = 368
Score = 215 bits (547), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 99/154 (64%), Positives = 119/154 (77%), Gaps = 9/154 (5%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +FI+ LPHLLFYGPPGTGKTTT+LA AR++Y+ + +MVLELNASD+RGI +VR+
Sbjct: 53 LTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSPTKMASMVLELNASDERGIDVVRN 112
Query: 357 QIFQFASTKTMHKSS---------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII 407
I FA TK + S +KL+ILDEADAMT DAQNALRR+IEK+T NVRFCII
Sbjct: 113 TIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCII 172
Query: 408 CNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
CNYL+ I PAIQSRCTRFRF PLD LI+ RL+Y
Sbjct: 173 CNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEY 206
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 109/182 (59%), Gaps = 28/182 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYL+ I PAIQSRCTRFRF PLD LI+ RL+Y++E E++ +TPDG
Sbjct: 160 IEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVETEQLKMTPDG 219
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYR----------PS- 109
K A++ +S GDMR V+N LQS A + D V+E+T++ + K PS
Sbjct: 220 KDALLIVSKGDMRTVINTLQSTAMSF-DTVSENTVYQCIGQPTPKEMKEVVKTLLNDPSK 278
Query: 110 ---------------TLDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
L ++++H D + T++IP+ + ++ + ++E L+ G S +
Sbjct: 279 KCMNTIQTKLFENGYALQDVITHLHDFVFTLDIPDEAMSAIITGLGEVEENLSTGCSNET 338
Query: 154 QL 155
QL
Sbjct: 339 QL 340
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 121/256 (47%), Gaps = 71/256 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS LDELV+H+ I+ T+ I L L+ Y L+A
Sbjct: 32 VEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLF------YGPPGTGKTTTVLAAARQ 85
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------YKLIILDEA 211
++ + VLELNASD+RGI +VR+ I FA TK + S +KL+ILDEA
Sbjct: 86 MYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEA 145
Query: 212 DAMTNDAQNALRR----------------------------------------------- 224
DAMT DAQNALRR
Sbjct: 146 DAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLE 205
Query: 225 ------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTE 278
+L +TPDGK A++ +S GDMR V+N LQS A + D V+E+TVY +G PT E
Sbjct: 206 YIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSF-DTVSENTVYQCIGQPTPKE 264
Query: 279 ITNILRWLLNESMDLC 294
+ +++ LLN+ C
Sbjct: 265 MKEVVKTLLNDPSKKC 280
Score = 37.4 bits (85), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
IQ E G AL D++T + V L+IP+ + ++ + ++E L+ G S + QL
Sbjct: 284 IQTKLFENGYALQDVITHLHDFVFTLDIPDEAMSAIITGLGEVEENLSTGCSNETQL 340
>sp|O74111|RFC3_BLAAD Replication factor C subunit 3 OS=Blastobotrys adeninivorans
GN=RFC3 PE=3 SV=1
Length = 338
Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 91/145 (62%), Positives = 114/145 (78%), Gaps = 1/145 (0%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I +F++E +LPHLLF+GPPGTGKTTTI+A AR++Y K + M+LELNASD+RGI +VRD
Sbjct: 41 IKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIYGK-NYRNMILELNASDERGIDVVRD 99
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+ + S +KL+ILDEADAMTN AQNALRRIIEK++ + RFCI+ NY K+ P
Sbjct: 100 QIKTFASTRQIFSSGFKLVILDEADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNP 159
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY 441
A+ SRCTRFRF PL I RL +
Sbjct: 160 ALLSRCTRFRFSPLKEDAIKHRLAH 184
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/260 (33%), Positives = 130/260 (50%), Gaps = 64/260 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+TLDE+ H+ +I+TI+ + E L L+ + GT + + A+
Sbjct: 20 VEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLL-------FHGPPGTGKTTTIIAVAR 72
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ +LELNASD+RGI +VRDQI FAST+ + S +KL+ILDEADAMTN AQN
Sbjct: 73 QIYGKNYRNMILELNASDERGIDVVRDQIKTFASTRQIFSSGFKLVILDEADAMTNAAQN 132
Query: 221 ALRR-------------------KL--------------PVTPDGKK------------- 234
ALRR KL P+ D K
Sbjct: 133 ALRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRLAHVIEQESVD 192
Query: 235 -------AIIDLSDGDMRKVLNILQS--AATAHADEVNEDTVYNSVGYPTKTEITNILRW 285
+++ LS GDMR+ LN+LQ+ A+ ++++E+ VY+ VG P +I +L+
Sbjct: 193 LSPEAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVYDCVGSPRPADIRTVLQA 252
Query: 286 LLNESMDLCYKINRFIDENE 305
+L+ S + +I +++
Sbjct: 253 VLDGSWESALHTFSYIKQSK 272
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 111/206 (53%), Gaps = 35/206 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK++ + RFCI+ NY K+ PA+ SRCTRFRF PL I RL +VIEQE V+++P+
Sbjct: 138 IEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKEDAIKHRLAHVIEQESVDLSPEA 197
Query: 61 KKAIIDLSDGDMRKVLNILQS--AATAHADEVNEDTIF------------TLLVSRVEKY 106
++++ LS GDMR+ LN+LQ+ A+ ++++E+ ++ T+L + ++
Sbjct: 198 FQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVYDCVGSPRPADIRTVLQAVLDGS 257
Query: 107 RPSTL---------------DELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE 151
S L D L + +++ + L+ +S+IE+RL++G +E
Sbjct: 258 WESALHTFSYIKQSKGLALADMLTAFAVEFQKLDLQNKTRIALLDGLSEIEWRLSSGGNE 317
Query: 152 KIQLSALIAAFNSARDKLEVLELNAS 177
IQ SA I + +EL AS
Sbjct: 318 SIQTSATIGVIKQS------MELEAS 337
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 459 IKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 518
IK KGLAL D+LT ++ +L++ + L+ +S+IE+RL++G +E IQ SA I
Sbjct: 268 IKQSKGLALADMLTAFAVEFQKLDLQNKTRIALLDGLSEIEWRLSSGGNESIQTSATIGV 327
Query: 519 FNSARDKLEA 528
+ + LEA
Sbjct: 328 IKQSME-LEA 336
>sp|P38629|RFC3_YEAST Replication factor C subunit 3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC3 PE=1 SV=1
Length = 340
Score = 199 bits (506), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/158 (59%), Positives = 118/158 (74%), Gaps = 8/158 (5%)
Query: 289 ESMDLCYKIN-------RFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVL 341
E++D Y N +F+DE +LPHLLFYGPPGTGKT+TI+A AR++Y K ++ MVL
Sbjct: 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVL 80
Query: 342 ELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTN 401
ELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNALRR+IE++T N
Sbjct: 81 ELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKN 140
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RFC++ NY K+ PA+ SRCTRFRF PL I R+
Sbjct: 141 TRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRI 178
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 124/255 (48%), Gaps = 63/255 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TLDE+ ++I+T+ VD K+ + + GT + + AL
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVR----KFVDEG-KLPHLLFYGPPGTGKTSTIVALAREI 70
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
VLELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNAL
Sbjct: 71 YGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNAL 130
Query: 223 RR-----------------------------------------------------KLPVT 229
RR KL ++
Sbjct: 131 RRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLS 190
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTVYNSVGYPTKTEITNILRW 285
P+ +KA+I+LS+GDMR+VLN+LQS DE+++D +Y G P +++ +L+
Sbjct: 191 PNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKS 250
Query: 286 LLNESMDLC-YKINR 299
+L + Y +N+
Sbjct: 251 ILEDDWGTAHYTLNK 265
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 113/201 (56%), Gaps = 40/201 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T N RFC++ NY K+TPA+ SRCTRFRF PL I R+ V+ EK+ ++P+
Sbjct: 134 IERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNA 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATA----HADEVNEDTIFTLLVSRVEKYRPS------- 109
+KA+I+LS+GDMR+VLN+LQS DE+++D I+ + RPS
Sbjct: 194 EKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAP----RPSDLKAVLK 249
Query: 110 ------------TLDELVSHQ-----DIISTI-------EIP-ESMLVDLVLKMSDIEYR 144
TL+++ S + D+I I E+ E V L+ K++DIEY
Sbjct: 250 SILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYS 309
Query: 145 LAAGTSEKIQLSALIAAFNSA 165
++ G +++IQ SA+I A ++
Sbjct: 310 ISKGGNDQIQGSAVIGAIKAS 330
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIP-ESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
+ + +++ KGLAL D++ I ++ E+ E V L+ K++DIEY ++ G +++IQ
Sbjct: 260 HYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQ 319
Query: 512 LSALIAAFNSA 522
SA+I A ++
Sbjct: 320 GSAVIGAIKAS 330
>sp|Q54ST4|RFC5_DICDI Probable replication factor C subunit 5 OS=Dictyostelium discoideum
GN=rfc5 PE=3 SV=1
Length = 347
Score = 191 bits (485), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/141 (65%), Positives = 109/141 (77%), Gaps = 3/141 (2%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I + ID N LPHLLFYGPPGTGKT+TI A ARKLY ++ MVLELNASDDRGI
Sbjct: 43 DITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYGD-NYSRMVLELNASDDRGI 101
Query: 352 GIVRDQIFQFASTKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+VR+QI FAS+ ++ YKLIILDEAD+MTN AQ ALRR+IEK+T RFCI+CN
Sbjct: 102 DVVREQIKTFASSMFFFNTTVPYKLIILDEADSMTNIAQTALRRVIEKYTKTTRFCIVCN 161
Query: 410 YLSKIPPAIQSRCTRFRFGPL 430
Y+ KI PA+QSRCTRFRF PL
Sbjct: 162 YVIKIIPALQSRCTRFRFSPL 182
Score = 129 bits (324), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 109/195 (55%), Gaps = 28/195 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T RFCI+CNY+ KI PA+QSRCTRFRF PL + RL +IE+E V V
Sbjct: 147 IEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKENVKVDSKA 206
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTIFTLL-------------------- 99
A+++L GDMRK LNILQS + + D + E+ I+
Sbjct: 207 MNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPMPSDIELMVDWLLNSDY 266
Query: 100 ------VSRVEKYRPSTLDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
+S ++K + +L+++++ Q + I++ +L L+ +SDIEY L+ G+SEK
Sbjct: 267 EEAFQNISDLKKKKGLSLNDIIATLQKFVVQIDLDNVILCKLLSHLSDIEYNLSIGSSEK 326
Query: 153 IQLSALIAAFNSARD 167
+QL +L+ F +RD
Sbjct: 327 LQLGSLVGCFQLSRD 341
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 116/242 (47%), Gaps = 61/242 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP LD+L++H+DI TI + L+D + + + GT + + A+
Sbjct: 27 VEKYRPKNLDDLIAHEDITQTI----TKLIDNN-TLPHLLFYGPPGTGKTSTIQAIARKL 81
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS--YKLIILDEADAMTNDAQN 220
VLELNASDDRGI +VR+QI FAS+ ++ YKLIILDEAD+MTN AQ
Sbjct: 82 YGDNYSRMVLELNASDDRGIDVVREQIKTFASSMFFFNTTVPYKLIILDEADSMTNIAQT 141
Query: 221 ALRR-----------------------------------KLPVTP--------------- 230
ALRR LP P
Sbjct: 142 ALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKENVK 201
Query: 231 -DGK--KAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTVYNSVGYPTKTEITNILRWL 286
D K A+++L GDMRK LNILQS + + D + E+ +Y GYP ++I ++ WL
Sbjct: 202 VDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPMPSDIELMVDWL 261
Query: 287 LN 288
LN
Sbjct: 262 LN 263
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 63/107 (58%), Gaps = 12/107 (11%)
Query: 421 RCTRFRFGPLDSSLIMSRL---DYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLL 477
+CT + P D L++ L DY++ +F NI ++K +KGL+L DI+ +
Sbjct: 244 KCTGYPM-PSDIELMVDWLLNSDYEE-AFQNI-------SDLKKKKGLSLNDIIATLQKF 294
Query: 478 VHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
V ++++ +L L+ +SDIEY L+ G+SEK+QL +L+ F +RD
Sbjct: 295 VVQIDLDNVILCKLLSHLSDIEYNLSIGSSEKLQLGSLVGCFQLSRD 341
>sp|A3MS28|RFCS_PYRCJ Replication factor C small subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcS PE=3 SV=1
Length = 326
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 75/144 (52%), Positives = 101/144 (70%), Gaps = 1/144 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ LPHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGIG++R
Sbjct: 27 RLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGIGVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S+I
Sbjct: 86 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
I SRC FRF P+ L+ RL
Sbjct: 146 DPIISRCAVFRFSPMPRHLMAERL 169
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 11/137 (8%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALIA 160
EKYRP + +E+V +++ ++ L + V K ++ + L GT + L
Sbjct: 8 EKYRPRSFEEVVDLEEV-------KARLREFV-KAGNLPHLLFYGPPGTGKTTMALVLAR 59
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELNASD+RGIG++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ
Sbjct: 60 ELYGEYWRENTLELNASDERGIGVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQ 119
Query: 221 ALRRKLPVTPDGKKAII 237
ALRR + + + I+
Sbjct: 120 ALRRIMEIYAQNTRFIL 136
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 36/202 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S+I I SRC FRF P+ L+ RL + E V + D
Sbjct: 125 MEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLREIARSEGVELKDDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDEL------ 114
I ++S+GDMRK +N+LQ AA V++ + S RPS + EL
Sbjct: 185 IDLIYEISEGDMRKAINLLQVAAA-----VSKVVDANAVASAAAAVRPSDVLELFNLAMG 239
Query: 115 ------------------VSHQDIIST-------IEIPESMLVDLVLKMSDIEYRLAAGT 149
V+ D+I +++ + + ++ +S+++YRL G
Sbjct: 240 GDLAKARDKLRELMYIKGVAGVDLIRVFQRELIRMQLDDDVKAEVAELLSEVDYRLTQGA 299
Query: 150 SEKIQLSALIAAFNSARDKLEV 171
E+IQL + S K+ V
Sbjct: 300 DEEIQLMYFLMKLGSIGKKIRV 321
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
K++E+ KG+A D++ + R+++ + + ++ +S+++YRL G E+IQL
Sbjct: 248 KLRELMYIKGVAGVDLIRVFQRELIRMQLDDDVKAEVAELLSEVDYRLTQGADEEIQLMY 307
Query: 515 LIAAFNSARDKLEAPP 530
+ S K+ P
Sbjct: 308 FLMKLGSIGKKIRVAP 323
>sp|A1RSA2|RFCS1_PYRIL Replication factor C small subunit 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 101/146 (69%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ +PHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGI ++R
Sbjct: 27 RLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGINVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S+I
Sbjct: 86 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
I SRC FRF P+ L+ RL Y
Sbjct: 146 DPIISRCAVFRFSPMPRHLMAERLKY 171
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 28/201 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S+I I SRC FRF P+ L+ RL Y+ + E V V D
Sbjct: 125 MEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLKYIAKSEGVEVKEDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI---------------FTLLVS---- 101
I +LS+GDMRK +NILQ AA + V+ + + F L +S
Sbjct: 185 IDLIYELSEGDMRKAINILQVAAATNKI-VDRNVVAAAAAAIRPTDIVELFNLALSGDYL 243
Query: 102 -RVEKYRPSTLDELVSHQDIISTIE-------IPESMLVDLVLKMSDIEYRLAAGTSEKI 153
EK R + V+ D I + + + ++ ++D++YRL G E+I
Sbjct: 244 KAREKMRELMYVKGVAGVDFIRAFQRELIRMSLDDETKAEVAELLADVDYRLTQGADEEI 303
Query: 154 QLSALIAAFNSARDKLEVLEL 174
QLS +A S K+ L
Sbjct: 304 QLSYFLAKLGSIGKKIRAASL 324
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 92/209 (44%), Gaps = 60/209 (28%)
Query: 104 EKYRPSTLDELVSHQDIISTI-EIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
EKYRP + DE+V +++ S + E +S M + + GT + L
Sbjct: 8 EKYRPRSFDEVVDLEEVKSRLREFVKSG------NMPHLLFYGPPGTGKTTMALVLAREL 61
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
+ LELNASD+RGI ++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ AL
Sbjct: 62 YGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQAL 121
Query: 223 RRKLPVTPDGKKAII--------------------------------------------- 237
RR + + + I+
Sbjct: 122 RRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLKYIAKSEGVEVK 181
Query: 238 --------DLSDGDMRKVLNILQSAATAH 258
+LS+GDMRK +NILQ AA +
Sbjct: 182 EDAIDLIYELSEGDMRKAINILQVAAATN 210
Score = 39.7 bits (91), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
K++E+ KG+A D + + R+ + + ++ ++D++YRL G E+IQLS
Sbjct: 248 KMRELMYVKGVAGVDFIRAFQRELIRMSLDDETKAEVAELLADVDYRLTQGADEEIQLSY 307
Query: 515 LIAAFNSARDKLEA---PP 530
+A S K+ A PP
Sbjct: 308 FLAKLGSIGKKIRAASLPP 326
>sp|Q8ZYK4|RFCS1_PYRAE Replication factor C small subunit 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 102/146 (69%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ +PHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGI ++R
Sbjct: 27 RLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGINVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S+I
Sbjct: 86 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
I SRC FRF P+ SL+ RL +
Sbjct: 146 DPIISRCAVFRFSPMPRSLMAERLKF 171
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 26/190 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S+I I SRC FRF P+ SL+ RL ++ + E V + D
Sbjct: 125 MEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKNEGVELREDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH-----------------AD--EVNEDTIFTLLVS 101
I +LS+GDMRK +N+LQ AA + AD E+ I V
Sbjct: 185 INMIYELSEGDMRKAINLLQVAAATNKVVDANAVASAAIAVRPADIIELFNLAISGDFVK 244
Query: 102 RVEKYRPSTLDELVSHQDIISTIE-------IPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
EK R + ++ D I + I + + ++ ++D++YRL G E+IQ
Sbjct: 245 AREKLRELMYLKGIAGADFIRAFQRELIRMPIDDDIKAEIAELLADVDYRLTQGADEEIQ 304
Query: 155 LSALIAAFNS 164
L+ L+ +
Sbjct: 305 LTYLLTKLGA 314
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 62/210 (29%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP + DE+V +++ ++ L + V M + + GT + L
Sbjct: 8 EKYRPRSFDEVVDLEEV-------KARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARE 60
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ A
Sbjct: 61 LYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQA 120
Query: 222 LRRKLPVTPDGKKAII-------------------------------------------- 237
LRR + + + I+
Sbjct: 121 LRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKNEGVEL 180
Query: 238 ---------DLSDGDMRKVLNILQSAATAH 258
+LS+GDMRK +N+LQ AA +
Sbjct: 181 REDAINMIYELSEGDMRKAINLLQVAAATN 210
Score = 35.8 bits (81), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 37/67 (55%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
K++E+ KG+A D + + R+ I + + ++ ++D++YRL G E+IQL+
Sbjct: 248 KLRELMYLKGIAGADFIRAFQRELIRMPIDDDIKAEIAELLADVDYRLTQGADEEIQLTY 307
Query: 515 LIAAFNS 521
L+ +
Sbjct: 308 LLTKLGA 314
>sp|Q09843|RFC2_SCHPO Replication factor C subunit 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc2 PE=1 SV=1
Length = 340
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 103/144 (71%), Gaps = 6/144 (4%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS 363
N LPH+LFYG PGTGKT+TILA +R+L+ + VLELNASD+RGI I+R+++ FA
Sbjct: 50 NNLPHMLFYGSPGTGKTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAK 109
Query: 364 TKTMHK------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
T +K +K+IILDEAD+MT DAQ ALRR +E + RFC+ICNY+++I
Sbjct: 110 TTVTNKVDGYPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDP 169
Query: 418 IQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC+++RF PLD+ ++ RL++
Sbjct: 170 LSSRCSKYRFKPLDNENMVKRLEF 193
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 28/191 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RFC+ICNY+++I + SRC+++RF PLD+ ++ RL+++ + V++ P
Sbjct: 147 MESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIAADQAVSMEPGV 206
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA------DEVNE--------------DTIFTLLV 100
A+++ S GDMRK + LQSAA H V E DT +T V
Sbjct: 207 VNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEELAGAVPYNIIRSLLDTAYTKNV 266
Query: 101 SRVEKYRPSTLDELVSHQDIISTIE---IPESMLVDLV-----LKMSDIEYRLAAGTSEK 152
S +E E S I+S + + E L V +K+S+++ RL G E
Sbjct: 267 SNIETLSRDVAAEGYSTGIILSQLHDVLLKEETLSSPVKYKIFMKLSEVDKRLNDGADET 326
Query: 153 IQLSALIAAFN 163
+QL L+++ +
Sbjct: 327 LQLLDLLSSIS 337
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 78/134 (58%), Gaps = 18/134 (13%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VE YRP TLD++ S + ST+++ + L+ +++ + L G+ + S ++A
Sbjct: 22 VELYRPKTLDQVSSQE---STVQVLKKTLLS-----NNLPHMLFYGSPGTGKTSTILALS 73
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK------SSYKLIILDEAD 212
F K VLELNASD+RGI I+R+++ FA T +K +K+IILDEAD
Sbjct: 74 RELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTNKVDGYPCPPFKIIILDEAD 133
Query: 213 AMTNDAQNALRRKL 226
+MT DAQ ALRR +
Sbjct: 134 SMTQDAQAALRRTM 147
>sp|A4WGV2|RFCS1_PYRAR Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 102/146 (69%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ +PHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGI ++R
Sbjct: 27 RLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGINVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S+I
Sbjct: 86 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYVSRII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
I SRC FRF P+ SL+ RL +
Sbjct: 146 DPIISRCAVFRFSPMPRSLMAERLRH 171
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP + DE+V +++ ++ L + V M + + GT + L
Sbjct: 8 EKYRPRSFDEVVDLEEV-------KARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARE 60
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ A
Sbjct: 61 LYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQA 120
Query: 222 LRR 224
LRR
Sbjct: 121 LRR 123
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S+I I SRC FRF P+ SL+ RL ++ + E + + D
Sbjct: 125 MEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRHIAKSEGIELRDDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQ-SAATAHADEVNEDTIFTLLVSRVEKYRPSTLDEL 114
I ++S+GDMRK +N+LQ +AAT+ + N T ++ RP+ + EL
Sbjct: 185 IDLIYEVSEGDMRKAINLLQVAAATSKVVDANAVASATTMI------RPADVVEL 233
>sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1
Length = 320
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 100/146 (68%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ +PHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGI ++R
Sbjct: 27 RLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGINVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S I
Sbjct: 86 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYISGII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSR RF PL ++SRL Y
Sbjct: 146 EPIQSRVVMIRFNPLPKEAVISRLRY 171
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 107/243 (44%), Gaps = 67/243 (27%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP + DE+V +++ +S L + V M + + GT + L
Sbjct: 8 EKYRPRSFDEVVDLEEV-------KSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARE 60
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ A
Sbjct: 61 LYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQA 120
Query: 222 LRR-----------------------------------KLP------------------V 228
LRR LP +
Sbjct: 121 LRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENEGVKI 180
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
+ D + I + + GDMRK +N LQ AA A E+ ED V ++G + +LR L
Sbjct: 181 SDDALETIYEFTQGDMRKAINALQIAA-ATEKEITEDVVARALGMVS----PRLLRETLQ 235
Query: 289 ESM 291
E++
Sbjct: 236 EAL 238
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S I IQSR RF PL ++SRL Y+ E E V ++ D
Sbjct: 125 MEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENEGVKISDDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
+ I + + GDMRK +N LQ AA A E+ ED +
Sbjct: 185 LETIYEFTQGDMRKAINALQIAA-ATEKEITEDVV 218
>sp|Q99J62|RFC4_MOUSE Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1
Length = 364
Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 138/245 (56%), Gaps = 28/245 (11%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFNIIIWY-IKIQEIKIEKG 464
Y+S+I + SRC++FRF PL + RL + +++ N I Y +KI E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKA 241
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR- 523
+ L + L E+ E ++ D+ AG + + A +S
Sbjct: 242 ITF---LQSATRLTGGKEVSEDVITDI------------AGVIPAATIDGIFTACHSGSF 286
Query: 524 DKLEA 528
DKLEA
Sbjct: 287 DKLEA 291
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 28/188 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + E+E V + +
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEE 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDT---------------IFTLLVS--- 101
++ +S+GD+RK + LQSA EV+ED IFT S
Sbjct: 227 IAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIFTACHSGSF 286
Query: 102 -RVEKYRPSTLDE------LVS--HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
++E + +DE LV+ H II + + + K+++++ LA G E
Sbjct: 287 DKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDKCLADGADEH 346
Query: 153 IQLSALIA 160
+QL +L A
Sbjct: 347 LQLMSLCA 354
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ ++++ + L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQDEVVAVLRKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 150 DEADSMTSAAQAALRRTM 167
>sp|Q8ZWS2|RFCS2_PYRAE Replication factor C small subunit 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS2 PE=3 SV=1
Length = 319
Score = 159 bits (403), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 100/146 (68%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ +F+ +PHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGI ++R
Sbjct: 27 RLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGINVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S I
Sbjct: 86 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSGII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSR RF PL + +RL Y
Sbjct: 146 EPIQSRTVMIRFSPLPKEAVFARLRY 171
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 99/224 (44%), Gaps = 63/224 (28%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP + DE+V +++ ++ L V M + + GT + L
Sbjct: 8 EKYRPRSFDEVVDLEEV-------KARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARE 60
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ A
Sbjct: 61 LYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQA 120
Query: 222 LRR-----------------------------------KLP------------------V 228
LRR LP V
Sbjct: 121 LRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGVKV 180
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVG 272
+ D +AI + + GDMR+ +N LQ AAT + V E+ V ++G
Sbjct: 181 SDDALEAIYEFTQGDMRRAINALQIAATV-SKAVTEEVVAKALG 223
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S I IQSR RF PL + +RL Y+ E E V V+ D
Sbjct: 125 MEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGVKVSDDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
+AI + + GDMR+ +N LQ AAT + V E+ +
Sbjct: 185 LEAIYEFTQGDMRRAINALQIAATV-SKAVTEEVV 218
>sp|P35249|RFC4_HUMAN Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2
Length = 363
Score = 159 bits (402), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 137/246 (55%), Gaps = 30/246 (12%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFASTKTMHKSS-------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNI------IIWYIKIQEIKIEK 463
Y+S+I + SRC++FRF PL + RL D N+ I + +K+ E + K
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRL-LDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
+ L + L EI E ++ D+ AG ++ + AA S
Sbjct: 241 AITF---LQSATRLTGGKEITEKVITDI------------AGVIPAEKIDGVFAACQSGS 285
Query: 524 -DKLEA 528
DKLEA
Sbjct: 286 FDKLEA 291
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNE---------------DTIFTLLVS--- 101
++ +S+GD+RK + LQSA E+ E D +F S
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSF 286
Query: 102 -RVEKYRPSTLDELVSHQDIISTIE--IPESMLVD-----LVLKMSDIEYRLAAGTSEKI 153
++E +DE + +++ + + E+ L D + K+++++ LA G E +
Sbjct: 287 DKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHL 346
Query: 154 QLSALIA 160
QL +L A
Sbjct: 347 QLISLCA 353
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 19/138 (13%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V VEKYRP +DE+ +++++ ++ L+ +D+ L G + S ++
Sbjct: 38 VPWVEKYRPKCVDEVAFQEEVVAVLKKS--------LEGADLPNLLFYGPPGTGKTSTIL 89
Query: 160 AA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------YKLIIL 208
AA F +L VLELNASD+RGI +VR+++ FA S +K++IL
Sbjct: 90 AAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVIL 149
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT+ AQ ALRR +
Sbjct: 150 DEADSMTSAAQAALRRTM 167
>sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1
Length = 322
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 99/146 (67%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F+ +PHLLFYGPPGTGKTT L AR+LY + + LELNASD+RGI ++R
Sbjct: 27 RLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGE-YWRENTLELNASDERGINVIR 85
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T + K+ +KL+ILDEAD MT+DAQ ALRRI+E + N RF ++ NY+S I
Sbjct: 86 ERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEMYAQNTRFILLANYISGII 145
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSR RF PL + +RL Y
Sbjct: 146 EPIQSRTVMIRFSPLPKEAVFARLRY 171
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 101/224 (45%), Gaps = 63/224 (28%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVL--KMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP + DE+V +++ ++ L + V M + + GT + L
Sbjct: 8 EKYRPRSFDEVVDLEEV-------KARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARE 60
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R+++ +FA T + K+ +KL+ILDEAD MT+DAQ A
Sbjct: 61 LYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQA 120
Query: 222 LRR-----------------------------------KLP------------------V 228
LRR LP +
Sbjct: 121 LRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGVKI 180
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVG 272
+ D +AI + + GDMR+ +N LQ AAT E+ E+TV ++G
Sbjct: 181 SDDALEAIYEFTQGDMRRAINALQIAATT-GKEITEETVAKALG 223
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + N RF ++ NY+S I IQSR RF PL + +RL Y+ + E V ++ D
Sbjct: 125 MEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGVKISDDA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
+AI + + GDMR+ +N LQ AAT E+ E+T+
Sbjct: 185 LEAIYEFTQGDMRRAINALQIAATT-GKEITEETV 218
>sp|Q54MD4|RFC4_DICDI Probable replication factor C subunit 4 OS=Dictyostelium discoideum
GN=rfc4 PE=3 SV=1
Length = 347
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 103/158 (65%), Gaps = 8/158 (5%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + + ++ LPHLLFYGPPGTGKT+TILA A +Y VLELNASD+RGI
Sbjct: 29 DVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGPELMKQRVLELNASDERGI 88
Query: 352 GIVRDQIFQFAS---TKTMHKSS-----YKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+VR +I FA KT +S +KLIILDEAD+MT DAQ ALRR IE + R
Sbjct: 89 EVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEADSMTTDAQAALRRTIETTSKTTR 148
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
FC++CNY+S+I + SRC +FRF PLD+ + RL +
Sbjct: 149 FCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKF 186
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 27/182 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE + RFC++CNY+S+I + SRC +FRF PLD+ + RL ++ +QE +
Sbjct: 140 IETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFISQQEGIKCEESV 199
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT--------LLVSRVEKYRPSTLD 112
+AI +S+GDMRK + LQSA A++++ED I+ L+ V+ + ++ D
Sbjct: 200 YQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLIKQLVDCCKKNSFD 259
Query: 113 ELVSH-QDII------------------STIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
L S Q II +T ++ +S + +K+ +++ L G+ E +
Sbjct: 260 RLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGNVDRNLIDGSEEFL 319
Query: 154 QL 155
QL
Sbjct: 320 QL 321
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 75/139 (53%), Gaps = 20/139 (14%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
V KYRP T+D++ +D+IS ++ L ++ + L G + S ++A
Sbjct: 13 VAKYRPKTVDDVSYQEDVISALKKS--------LNTGNLPHLLFYGPPGTGKTSTILAIA 64
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS---TKTMHKSS-----YKLIILDE 210
+ K VLELNASD+RGI +VR +I FA KT +S +KLIILDE
Sbjct: 65 MDIYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDE 124
Query: 211 ADAMTNDAQNALRRKLPVT 229
AD+MT DAQ ALRR + T
Sbjct: 125 ADSMTTDAQAALRRTIETT 143
Score = 39.3 bits (90), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 234 KAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVG 272
+AI +S+GDMRK + LQSA A++++ED +YN G
Sbjct: 201 QAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAG 239
>sp|P40348|RFC2_YEAST Replication factor C subunit 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC2 PE=1 SV=1
Length = 353
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/146 (51%), Positives = 102/146 (69%), Gaps = 10/146 (6%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA--- 362
LPH+LFYGPPGTGKT+TILA ++LY + +LELNASD+RGI IVR+++ FA
Sbjct: 58 LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLT 117
Query: 363 -STKTMHK------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
S + H YK+IILDEAD+MT DAQ+ALRR +E ++ RFC+ICNY+++I
Sbjct: 118 VSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRII 177
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC++FRF LD+S + RL +
Sbjct: 178 DPLASRCSKFRFKALDASNAIDRLRF 203
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 13/127 (10%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD+S + RL ++ EQE V
Sbjct: 157 METYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGV 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAA-------------TAHADEVNEDTIFTLLVSRVEKYR 107
+ I+D+S GD+R+ + +LQSA+ + +E+ +L+ VEK +
Sbjct: 217 LERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVK 276
Query: 108 PSTLDEL 114
DE+
Sbjct: 277 SGDFDEI 283
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 22/138 (15%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP LDE+ + ++ ++ LK +++ + L G + S ++A
Sbjct: 28 VEKYRPKNLDEVTAQDHAVTVLK--------KTLKSANLPHMLFYGPPGTGKTSTILALT 79
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA----STKTMHK------SSYKLIIL 208
+ K +LELNASD+RGI IVR+++ FA S + H YK+IIL
Sbjct: 80 KELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIIL 139
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MT DAQ+ALRR +
Sbjct: 140 DEADSMTADAQSALRRTM 157
>sp|Q4JAB0|RFCS_SULAC Replication factor C small subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcS PE=3 SV=1
Length = 325
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +F+ E +PHLLF GPPGTGKTT LA R LY + LELNASD+RGI
Sbjct: 24 EIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGN-NYRQYFLELNASDERGI 82
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R+++ +FA T + +K+I+LDEAD MT DAQ ALRR +E +T RF + CNYL
Sbjct: 83 DVIRNKVKEFARTVASNNVPFKVILLDEADNMTADAQQALRRTMELYTETTRFILACNYL 142
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI IQSR FRF PL +++RL
Sbjct: 143 SKIIEPIQSRTALFRFYPLKKEDVVNRL 170
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 100/189 (52%), Gaps = 31/189 (16%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T RF + CNYLSKI IQSR FRF PL +++RL + + EKV P G
Sbjct: 126 MELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKVEFDPKG 185
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL--------------------V 100
+ I D++ GDMRK +N++Q AA+A+ ++ +T++ +L +
Sbjct: 186 IETIFDITQGDMRKAINVIQ-AASAYG-KITVETVYKVLGLAQPKEIREMLHLALSGKFL 243
Query: 101 SRVEKYRPSTLDELVSHQDII---------STIEIPESMLVDLVLKMSDIEYRLAAGTSE 151
+K R ++ +S +DII + I IP+ + V LV ++E+R+ G +
Sbjct: 244 QARDKLRELLINYGLSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVEFRIMEGADD 303
Query: 152 KIQLSALIA 160
+IQLSA +A
Sbjct: 304 EIQLSAFLA 312
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 110/240 (45%), Gaps = 64/240 (26%)
Query: 104 EKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP +LDE+V+ ++I+ ++ + E + L+ + GT + AL+
Sbjct: 9 EKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLL-------FAGPPGTGKTTAALALVRD 61
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R+++ +FA T + +K+I+LDEAD MT DAQ A
Sbjct: 62 LYGNNYRQYFLELNASDERGIDVIRNKVKEFARTVASNNVPFKVILLDEADNMTADAQQA 121
Query: 222 LRR-----------------------------------------------------KLPV 228
LRR K+
Sbjct: 122 LRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKVEF 181
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
P G + I D++ GDMRK +N++Q AA+A+ ++ +TVY +G EI +L L+
Sbjct: 182 DPKGIETIFDITQGDMRKAINVIQ-AASAYG-KITVETVYKVLGLAQPKEIREMLHLALS 239
Score = 38.9 bits (89), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 455 KIQEIKIEKGLALTDILTEI--SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
K++E+ I GL+ DI+ ++ L + + IP+ + V LV ++E+R+ G ++IQL
Sbjct: 248 KLRELLINYGLSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVEFRIMEGADDEIQL 307
Query: 513 SALIA 517
SA +A
Sbjct: 308 SAFLA 312
>sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcS PE=3
SV=1
Length = 327
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ RF+ + +PHLLF GPPGTGKTT LA LY + LELNASD+RGI
Sbjct: 26 DIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYGD-NYRQYFLELNASDERGI 84
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R+++ +FA T +K+++LDEAD MT DAQ ALRR +E +T RF + CNYL
Sbjct: 85 DVIRNKVKEFARTVAGGNVPFKVVLLDEADNMTADAQQALRRTMELYTETTRFILACNYL 144
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI IQSR FRF PL +++RL Y
Sbjct: 145 SKIIEPIQSRTALFRFYPLKKEDVVARLAY 174
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 96/187 (51%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T RF + CNYLSKI IQSR FRF PL +++RL Y+ + EKV
Sbjct: 128 MELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNEKVEYDQKA 187
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNEDTIFTL---LVSR 102
+ I D++ GDMRK +NILQ+++ A E+ E + L +
Sbjct: 188 LETIYDITQGDMRKAINILQASSVYGKVTVEAVYKVLGLAQPKEIREMIMLALQGNFLKA 247
Query: 103 VEKYRPSTLDELVSHQDIISTIE---------IPESMLVDLVLKMSDIEYRLAAGTSEKI 153
EK R ++ +S +DII I IP+ + V LV + ++EYR+ G ++I
Sbjct: 248 REKLRELLVNYGLSGEDIIKQIHREVTGNEINIPDDLKVLLVDYIGEVEYRIMEGADDEI 307
Query: 154 QLSALIA 160
QL+AL+A
Sbjct: 308 QLNALLA 314
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 103/233 (44%), Gaps = 60/233 (25%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP +LD++V+ +DI+ ++ + D M + + GT + AL+
Sbjct: 11 EKYRPRSLDDIVNQKDIVERLK---RFVKDK--NMPHLLFSGPPGTGKTTAALALVHDLY 65
Query: 164 SARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALR 223
+ LELNASD+RGI ++R+++ +FA T +K+++LDEAD MT DAQ ALR
Sbjct: 66 GDNYRQYFLELNASDERGIDVIRNKVKEFARTVAGGNVPFKVVLLDEADNMTADAQQALR 125
Query: 224 RKLPVTPDGKKAII---------------------------------------------- 237
R + + + + I+
Sbjct: 126 RTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNEKVEYDQ 185
Query: 238 -------DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
D++ GDMRK +NILQ A++ +V + VY +G EI ++
Sbjct: 186 KALETIYDITQGDMRKAINILQ--ASSVYGKVTVEAVYKVLGLAQPKEIREMI 236
Score = 40.8 bits (94), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 455 KIQEIKIEKGLALTDILTEISLLV--HRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
K++E+ + GL+ DI+ +I V + + IP+ + V LV + ++EYR+ G ++IQL
Sbjct: 250 KLRELLVNYGLSGEDIIKQIHREVTGNEINIPDDLKVLLVDYIGEVEYRIMEGADDEIQL 309
Query: 513 SALIA 517
+AL+A
Sbjct: 310 NALLA 314
>sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1
Length = 329
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 138/242 (57%), Gaps = 23/242 (9%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +F+ E +PHLLF GPPGTGKTT A L+ + + +LELNASD+RGI
Sbjct: 30 EIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFGE-NYRQYMLELNASDERGI 88
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ +FA T+ +K+++LDEAD MT DAQ ALRR++E +T RF +I NY
Sbjct: 89 DVIRSKVKEFARTRVAANIPFKIVLLDEADNMTADAQQALRRLMEMYTATTRFILIANYP 148
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEK-------G 464
SKI IQSRC FRF PL ++SRL W + ++++I++
Sbjct: 149 SKIIEPIQSRCAVFRFAPLKKEDVISRLK-----------WIAEQEKVEIDEEALEAIHD 197
Query: 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524
L+ D+ I++L + + + VD V K+ + + + IQL AL FN AR+
Sbjct: 198 LSEGDMRRAINILQAAAALGK-VTVDSVYKVVGLAH--PREIRQMIQL-ALAGNFNDARE 253
Query: 525 KL 526
KL
Sbjct: 254 KL 255
Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 99/187 (52%), Gaps = 27/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T RF +I NY SKI IQSRC FRF PL ++SRL ++ EQEKV + +
Sbjct: 132 MEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKVEIDEEA 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNEDTIFTL---LVSR 102
+AI DLS+GDMR+ +NILQ+AA AH E+ + L
Sbjct: 192 LEAIHDLSEGDMRRAINILQAAAALGKVTVDSVYKVVGLAHPREIRQMIQLALAGNFNDA 251
Query: 103 VEKYRPSTLDELVS--------HQDIIST-IEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
EK R ++ +S H++I ST I+IP+ + + +I++RL G ++I
Sbjct: 252 REKLRELMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAGEIQFRLVEGADDEI 311
Query: 154 QLSALIA 160
QL+A +A
Sbjct: 312 QLNAFLA 318
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 109/240 (45%), Gaps = 66/240 (27%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG---TSEKIQLSALIA 160
EKYRP TLDE+V ++I+S ++ +K ++ + L AG T + L
Sbjct: 15 EKYRPKTLDEIVDQEEIVSRLK--------QFVKERNMPHLLFAGPPGTGKTTAAHCLAH 66
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ +LELNASD+RGI ++R ++ +FA T+ +K+++LDEAD MT DAQ
Sbjct: 67 DLFGENYRQYMLELNASDERGIDVIRSKVKEFARTRVAANIPFKIVLLDEADNMTADAQQ 126
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR K+
Sbjct: 127 ALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKVE 186
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+ + +AI DLS+GDMR+ +NILQ+AA +V D+VY VG EI +++ L
Sbjct: 187 IDEEALEAIHDLSEGDMRRAINILQAAAA--LGKVTVDSVYKVVGLAHPREIRQMIQLAL 244
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHR------LEIPESMLVDLVLKMSDIEYRLAAGTSE 508
K++E+ I GL+ D++ + VHR ++IP+ + + +I++RL G +
Sbjct: 254 KLRELMINYGLSGVDVIKQ----VHREIFSTDIKIPDEFKIIIADLAGEIQFRLVEGADD 309
Query: 509 KIQLSALIA 517
+IQL+A +A
Sbjct: 310 EIQLNAFLA 318
>sp|Q8PVY4|RFCS_METMA Replication factor C small subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rfcS PE=3 SV=1
Length = 338
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 97/142 (68%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
++ LPHLLF GPPG GKT + ++ AR+++ + + ELNASD+RGI IVR++I
Sbjct: 40 YVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDLWRENFTELNASDERGIDIVRNKIK 99
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
FA T M + +K+I LDEADA+T+DAQ+ALRR +EKF++N RF + CNY SKI IQ
Sbjct: 100 NFAKTAPMGGAPFKIIFLDEADALTSDAQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQ 159
Query: 420 SRCTRFRFGPLDSSLIMSRLDY 441
SRC +RF L I RL+Y
Sbjct: 160 SRCAVYRFRRLSDKAIRERLEY 181
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 112/205 (54%), Gaps = 38/205 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EKF++N RF + CNY SKI IQSRC +RF L I RL+Y+ +++ +++T G
Sbjct: 135 MEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQDLSITDGG 194
Query: 61 KKAIIDLSDGDMRKVLNILQSA------------------ATAHADEVNEDTIFTLLVS- 101
+A+I ++ GDMRK +N LQ+A ATA+ +E+ ++ I T L
Sbjct: 195 YEALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEI-KNLIETALRGN 253
Query: 102 -RVEKYRPSTL--DELVSHQDIISTI-----EIPESMLVDLVLKMSDI----------EY 143
RV + + L +E +S +DI+ I E+ M++DL L DI ++
Sbjct: 254 FRVARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMILDLGLSERDIVGLVDIIGETDF 313
Query: 144 RLAAGTSEKIQLSALIAAFNSARDK 168
RL G SEKIQL AL+A F +R++
Sbjct: 314 RLTEGASEKIQLEALLAHFALSREE 338
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 121/265 (45%), Gaps = 71/265 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG------TSEKIQLS 156
+EKYRP L+++ ++ I E ++ + K ++ + L +G T+ + ++
Sbjct: 16 IEKYRPVRLNQVAGQEETI------ERLMSYVATK--NLPHLLFSGPPGVGKTASAVSIA 67
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
I + R+ ELNASD+RGI IVR++I FA T M + +K+I LDEADA+T+
Sbjct: 68 REIFGEDLWRENF--TELNASDERGIDIVRNKIKNFAKTAPMGGAPFKIIFLDEADALTS 125
Query: 217 DAQNALRRKL-------------------------------------------------- 226
DAQ+ALRR +
Sbjct: 126 DAQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKE 185
Query: 227 ---PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADE-VNEDTVYNSVGYPTKTEITNI 282
+T G +A+I ++ GDMRK +N LQ+AA ++ ++ +T+Y + EI N+
Sbjct: 186 QDLSITDGGYEALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEIKNL 245
Query: 283 LRWLLNESMDLCYK-INRFIDENEL 306
+ L + + K +NR + E L
Sbjct: 246 IETALRGNFRVARKELNRLLYEEGL 270
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 8/72 (11%)
Query: 462 EKGLALTDILTEI--------SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 513
E+GL+ DI+ +I +L++ L + E +V LV + + ++RL G SEKIQL
Sbjct: 267 EEGLSGEDIVGQIYRVVSEMDNLMILDLGLSERDIVGLVDIIGETDFRLTEGASEKIQLE 326
Query: 514 ALIAAFNSARDK 525
AL+A F +R++
Sbjct: 327 ALLAHFALSREE 338
>sp|P0C7N7|RFC2_PHANO Replication factor C subunit 2 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=RFC2 PE=3 SV=1
Length = 411
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 118/196 (60%), Gaps = 37/196 (18%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
++R + + LPH+LFYGPPGTGKT+TILA A++LY + VLELNASD+RGI IVR
Sbjct: 57 LSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYGPELMKSRVLELNASDERGISIVRQ 116
Query: 357 QIFQFASTKTMHKSSY--------------------------KLIILDEADAMTNDAQNA 390
++ FA + +Y K+I+LDEAD+MT DAQ+A
Sbjct: 117 KVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDKYSCPPFKIIVLDEADSMTQDAQSA 176
Query: 391 LRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNII 450
LRR +E ++ RFC++CNY+++I + SRC++FRF LD + R+ DDI+
Sbjct: 177 LRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVRRV--DDIA----- 229
Query: 451 IWYIKIQEIKIEKGLA 466
K++++K++ G++
Sbjct: 230 ----KLEDVKLDAGVS 241
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 53/83 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC++CNY+++I + SRC++FRF LD + R+D + + E V +
Sbjct: 181 METYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGV 240
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ ++ ++DGD+RK + LQSAA
Sbjct: 241 SEELVRVADGDLRKAITFLQSAA 263
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 77/154 (50%), Gaps = 38/154 (24%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP TL E V+ QD +TI+I + L+ S++ + L G + S ++A
Sbjct: 36 VEKYRPKTLSE-VTAQD--NTIQI-----LSRTLQSSNLPHMLFYGPPGTGKTSTILALA 87
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSY--------------- 203
+ K VLELNASD+RGI IVR ++ FA + +Y
Sbjct: 88 KQLYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMV 147
Query: 204 -----------KLIILDEADAMTNDAQNALRRKL 226
K+I+LDEAD+MT DAQ+ALRR +
Sbjct: 148 RYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTM 181
>sp|P60374|RFCS_NANEQ Replication factor C small subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcS PE=3 SV=1
Length = 322
Score = 152 bits (384), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 146/292 (50%), Gaps = 68/292 (23%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
F+++ +PHLLF GPPGTGKTT LA A +LY A + LELNASD+RGI ++R ++
Sbjct: 29 FVEKKNMPHLLFAGPPGTGKTTAALALAHELYGDA-WRENFLELNASDERGIDVIRHKVK 87
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
+FA K + +K++ LDEADA+T DAQ ALRRI+EK++ + RF + CNY SKI IQ
Sbjct: 88 EFARAKPIGDVPFKIVFLDEADALTRDAQQALRRIMEKYSQSTRFILSCNYFSKIIEPIQ 147
Query: 420 SRCTRFRFGPLD--------------SSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGL 465
SR T F+F PL+ LI+ D + ++I ++ + I I +
Sbjct: 148 SRVTVFKFKPLEKEAFRELINRIVKGEGLILENEDEIINALYDIAEGDLR-KAINILQAA 206
Query: 466 AL------TDILTEISLLVHRLEIPE--------------SMLVDLVL------------ 493
A+ D L EI+ + EI E SML+DL+L
Sbjct: 207 AMMSKTITVDRLYEIASIAKPKEIDEVLNKAMQGNFLEARSMLIDLMLKYGMSGEDVIKA 266
Query: 494 --------------------KMSDIEYRLAAGTSEKIQLSALIAAFNSARDK 525
K+ DIE+R+ G + +QL AL+A + K
Sbjct: 267 IQKRVWSLPISDREKLMILDKIGDIEFRIVEGADDLVQLDALLAWLGLGKYK 318
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 100/196 (51%), Gaps = 28/196 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ + RF + CNY SKI IQSR T F+F PL+ ++ +++ E + + +
Sbjct: 123 MEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKGEGLILENED 182
Query: 61 K--KAIIDLSDGDMRKVLNILQSAA----TAHADEVNE----------DTIF-------- 96
+ A+ D+++GD+RK +NILQ+AA T D + E D +
Sbjct: 183 EIINALYDIAEGDLRKAINILQAAAMMSKTITVDRLYEIASIAKPKEIDEVLNKAMQGNF 242
Query: 97 ----TLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
++L+ + KY S D + + Q + ++ I + + ++ K+ DIE+R+ G +
Sbjct: 243 LEARSMLIDLMLKYGMSGEDVIKAIQKRVWSLPISDREKLMILDKIGDIEFRIVEGADDL 302
Query: 153 IQLSALIAAFNSARDK 168
+QL AL+A + K
Sbjct: 303 VQLDALLAWLGLGKYK 318
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 9/123 (7%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLK--MSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP +D++++ ++I + L V K M + + GT + AL
Sbjct: 6 EKYRPKRIDDIINQEEI-------KKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHE 58
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
+ LELNASD+RGI ++R ++ +FA K + +K++ LDEADA+T DAQ A
Sbjct: 59 LYGDAWRENFLELNASDERGIDVIRHKVKEFARAKPIGDVPFKIVFLDEADALTRDAQQA 118
Query: 222 LRR 224
LRR
Sbjct: 119 LRR 121
Score = 33.1 bits (74), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 235 AIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
A+ D+++GD+RK +NILQ+AA + + D +Y EI +L
Sbjct: 187 ALYDIAEGDLRKAINILQAAAMM-SKTITVDRLYEIASIAKPKEIDEVL 234
>sp|Q9UXF5|RFCS_SULSO Replication factor C small subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rfcS
PE=1 SV=1
Length = 330
Score = 152 bits (383), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ +F+ E +PHLLF GPPGTGKTT LA LY + LELNASD+RGI ++R
Sbjct: 31 RLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYGD-NYTEYFLELNASDERGIDVIR 89
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA T +K+++LDEAD MT DAQ ALRR +E +T N RF + CNYLSKI
Sbjct: 90 NKVKEFARTVIPGDIPFKVVLLDEADNMTADAQQALRRTMELYTENTRFILACNYLSKII 149
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSR FRF PL +++RL Y
Sbjct: 150 EPIQSRTALFRFYPLKKEDVVNRLIY 175
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 35/191 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T N RF + CNYLSKI IQSR FRF PL +++RL Y+ + EK
Sbjct: 129 MELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNEKAEYDQKA 188
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT---------------AHADEVNE------------- 92
+ I D++ GDMRK +NILQ+A+ A EV E
Sbjct: 189 LETIYDITMGDMRKSINILQAASAYGKISVEAVFKVLGLAQPKEVREMINLALQGKFTQA 248
Query: 93 -DTIFTLLVSRVEKYRPSTLDELVS-HQDIIST-IEIPESMLVDLVLKMSDIEYRLAAGT 149
D + TLL++ Y S D + H++I S+ I+I E + V L+ + + E+R+ G
Sbjct: 249 RDKLRTLLIT----YGLSGEDIVKQIHREITSSEIQISEELRVLLLDYIGETEFRIIEGA 304
Query: 150 SEKIQLSALIA 160
++IQLSAL+A
Sbjct: 305 DDEIQLSALLA 315
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 106/240 (44%), Gaps = 64/240 (26%)
Query: 104 EKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
EKYRP TLD++V+ ++II ++ + E M + + GT + AL+
Sbjct: 12 EKYRPKTLDDIVNQREIIDRLKKFVKEK-------NMPHLLFAGPPGTGKTTAALALVHD 64
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNA 221
LELNASD+RGI ++R+++ +FA T +K+++LDEAD MT DAQ A
Sbjct: 65 LYGDNYTEYFLELNASDERGIDVIRNKVKEFARTVIPGDIPFKVVLLDEADNMTADAQQA 124
Query: 222 LRRKLPVTPDGKKAII-------------------------------------------- 237
LRR + + + + I+
Sbjct: 125 LRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNEKAEY 184
Query: 238 ---------DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
D++ GDMRK +NILQ AA+A+ +++ + V+ +G E+ ++ L
Sbjct: 185 DQKALETIYDITMGDMRKSINILQ-AASAYG-KISVEAVFKVLGLAQPKEVREMINLALQ 242
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 455 KIQEIKIEKGLALTDILTEI--SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
K++ + I GL+ DI+ +I + ++I E + V L+ + + E+R+ G ++IQL
Sbjct: 251 KLRTLLITYGLSGEDIVKQIHREITSSEIQISEELRVLLLDYIGETEFRIIEGADDEIQL 310
Query: 513 SALIA 517
SAL+A
Sbjct: 311 SALLA 315
>sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcS PE=3 SV=3
Length = 325
Score = 152 bits (383), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 102/146 (69%), Gaps = 1/146 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ +F+ + +PHLLF GPPGTGKTT A A L+ + + +LELNASD+RGI ++R
Sbjct: 30 RLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFGE-NYRQYMLELNASDERGINVIR 88
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA ++T + +K+++LDEAD MT+DAQ ALRR++E +++ RF +I NY SKI
Sbjct: 89 EKVKEFARSRTPPEIPFKIVLLDEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKII 148
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSRC FRF PL ++ RL Y
Sbjct: 149 DPIQSRCAFFRFQPLSKQDVIERLRY 174
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 39/204 (19%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +++ RF +I NY SKI IQSRC FRF PL ++ RL Y+ E E V+ +
Sbjct: 128 MELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGVDYEEEA 187
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVS---- 116
AI ++S+GDMRK +N+LQ+A ++ +V D ++ + V +P + E+++
Sbjct: 188 LDAIYEISEGDMRKAINVLQAA--SYLGKVTVDAVYRV----VGMAKPREVREMLATALK 241
Query: 117 ----------------------------HQDIIST-IEIPESMLVDLVLKMSDIEYRLAA 147
H+++ ST +++PE + V + ++ YRL
Sbjct: 242 GDFTAARSLLRKIMIEYGMSGEDVARQIHRELFSTELKMPEELRVLAADYLGEVHYRLVE 301
Query: 148 GTSEKIQLSALIAAFNSARDKLEV 171
G+ + IQLSA +A KLEV
Sbjct: 302 GSDDDIQLSAFLAWLTMMSRKLEV 325
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 112/237 (47%), Gaps = 66/237 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG---TSEKIQLSALI 159
VEKYRP +LD++V + ++ ++ +K ++ + L AG T + AL
Sbjct: 10 VEKYRPRSLDDIVDQKHVVERLK--------QFVKQRNMPHLLFAGPPGTGKTTAAHALA 61
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
+ +LELNASD+RGI ++R+++ +FA ++T + +K+++LDEAD MT+DAQ
Sbjct: 62 HDLFGENYRQYMLELNASDERGINVIREKVKEFARSRTPPEIPFKIVLLDEADNMTSDAQ 121
Query: 220 NALRRKL---------------------PV---------TPDGKKAII------------ 237
ALRR + P+ P K+ +I
Sbjct: 122 QALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGV 181
Query: 238 -----------DLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
++S+GDMRK +N+LQ+A ++ +V D VY VG E+ +L
Sbjct: 182 DYEEEALDAIYEISEGDMRKAINVLQAA--SYLGKVTVDAVYRVVGMAKPREVREML 236
Score = 40.0 bits (92), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 456 IQEIKIEKGLALTDILTEI--SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 513
+++I IE G++ D+ +I L L++PE + V + ++ YRL G+ + IQLS
Sbjct: 251 LRKIMIEYGMSGEDVARQIHRELFSTELKMPEELRVLAADYLGEVHYRLVEGSDDDIQLS 310
Query: 514 ALIAAFNSARDKLE 527
A +A KLE
Sbjct: 311 AFLAWLTMMSRKLE 324
>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic
archaeon RC-I GN=rfcS PE=3 SV=1
Length = 322
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 98/138 (71%), Gaps = 1/138 (0%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
++ LPHLLF GPPG GKT +A AR+LY + +++ +ELNASD+RGI +VR+ I
Sbjct: 32 YVKSGNLPHLLFSGPPGVGKTACAVALARELYGET-WHSNFIELNASDERGIDVVRNNIK 90
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
FA T + ++ +K+I LDEADA+T+DAQ+ALRR +E++ RF I CNY SKI IQ
Sbjct: 91 NFARTAPLGEAKFKIIFLDEADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQ 150
Query: 420 SRCTRFRFGPLDSSLIMS 437
SRC +RFGPL+++ I +
Sbjct: 151 SRCAVYRFGPLNATDITT 168
Score = 102 bits (255), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 104/198 (52%), Gaps = 31/198 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E++ RF I CNY SKI IQSRC +RFGPL+++ I + + + + E + + DG
Sbjct: 126 MERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNEGLKIEKDG 185
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKY-------------- 106
A+I ++ GDMR+ +N LQSAAT A ++ D I+ + K
Sbjct: 186 MDALIYVARGDMRRAINALQSAATI-AKDITADVIYQTTSTAKPKEIEDMLKLALNGQFM 244
Query: 107 -RPSTLDEL-----VSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+ LDEL +S DII I + E +LV LV ++ + ++RL G SE+I
Sbjct: 245 DSRNKLDELLITYGLSGTDIIDQIYRSMFELGLDEDVLVALVDRIGEADFRLTEGASERI 304
Query: 154 QLSALIAAF---NSARDK 168
Q+ AL+A F +AR K
Sbjct: 305 QIEALLAHFKMQGAARSK 322
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 126/284 (44%), Gaps = 82/284 (28%)
Query: 92 EDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE 151
ED I+T EKYRP L++++ HQ I L+ V K ++ + L +G
Sbjct: 3 EDEIWT------EKYRPRRLEDVIGHQQITRR-------LISYV-KSGNLPHLLFSGPPG 48
Query: 152 KIQLSALIAAFNSARDKL---EVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIIL 208
+ + +A + +ELNASD+RGI +VR+ I FA T + ++ +K+I L
Sbjct: 49 VGKTACAVALARELYGETWHSNFIELNASDERGIDVVRNNIKNFARTAPLGEAKFKIIFL 108
Query: 209 DEADAMTNDAQNALRR-------------------------------------------- 224
DEADA+T+DAQ+ALRR
Sbjct: 109 DEADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITT 168
Query: 225 ---------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPT 275
L + DG A+I ++ GDMR+ +N LQSAAT A ++ D +Y +
Sbjct: 169 GITRIAKNEGLKIEKDGMDALIYVARGDMRRAINALQSAATI-AKDITADVIYQTTSTAK 227
Query: 276 KTEITNILRWLLNESMDLCYKINRFID-ENELPHLLF-YGPPGT 317
EI ++L+ LN +F+D N+L LL YG GT
Sbjct: 228 PKEIEDMLKLALN---------GQFMDSRNKLDELLITYGLSGT 262
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
K+ E+ I GL+ TDI+ +I + L + E +LV LV ++ + ++RL G SE+IQ+ A
Sbjct: 249 KLDELLITYGLSGTDIIDQIYRSMFELGLDEDVLVALVDRIGEADFRLTEGASERIQIEA 308
Query: 515 LIAAF---NSARDK 525
L+A F +AR K
Sbjct: 309 LLAHFKMQGAARSK 322
>sp|A1RWU7|RFCS_THEPD Replication factor C small subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcS PE=3 SV=1
Length = 325
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ F+ +PHLLF GPPGTGKTT LA A LY ++ + LELNASD+RGI
Sbjct: 23 EIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYGES-WRDNTLELNASDERGI 81
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R +I +A T + +KL+ILDEAD MT DAQ ALRR +E F+ N RF +I NY
Sbjct: 82 DVIRSRIKDYARTLPIGDVPFKLVILDEADNMTGDAQQALRRTMELFSRNTRFILIANYA 141
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI IQSRC FRF PL RL +
Sbjct: 142 SKIIEPIQSRCAVFRFQPLPKGDAFQRLRW 171
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 39/194 (20%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F+ N RF +I NY SKI IQSRC FRF PL RL ++ +QE + V
Sbjct: 125 MELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQEGITVDDGA 184
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVS---- 116
+AI + S GD+RK +N LQ AA+A + V E+ ++ L RV +P + E++
Sbjct: 185 LEAIWEESQGDLRKAINTLQ-AASAISRNVTEEVVYAAL-GRV---KPKEVREMIESALK 239
Query: 117 ----------------------------HQDIIS--TIEIPESMLVDLVLKMSDIEYRLA 146
H++++S ++ + ++ L +L++ + + YR+
Sbjct: 240 GNLLEARDKLRLLLYNYGLSGVDIIRFIHREVLSQKSVRLDDATLAELLVLVGETNYRIV 299
Query: 147 AGTSEKIQLSALIA 160
G+ ++IQL AL++
Sbjct: 300 EGSDDEIQLMALLS 313
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 110/239 (46%), Gaps = 69/239 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP +LDE+V ++I+ ++ +K ++ + L AG + +A +A
Sbjct: 7 VEKYRPRSLDEIVDQEEIVKRLK--------EFVKNKNMPHLLFAGPPGTGKTTAALALA 58
Query: 163 N-----SARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
+ S RD LELNASD+RGI ++R +I +A T + +KL+ILDEAD MT D
Sbjct: 59 HDLYGESWRDN--TLELNASDERGIDVIRSRIKDYARTLPIGDVPFKLVILDEADNMTGD 116
Query: 218 AQNALRRKL---------------------PVT-----------PDGK------------ 233
AQ ALRR + P+ P G
Sbjct: 117 AQQALRRTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQE 176
Query: 234 ---------KAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
+AI + S GD+RK +N LQ AA+A + V E+ VY ++G E+ ++
Sbjct: 177 GITVDDGALEAIWEESQGDLRKAINTLQ-AASAISRNVTEEVVYAALGRVKPKEVREMI 234
>sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1
Length = 334
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 97/146 (66%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++ LPHLLF GPPG GKT + ++ AR+++ + + ELNASD+RGI +VR
Sbjct: 32 RLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDLWRENFTELNASDERGIDVVR 91
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+I FA T M + +K+I LDEADA+T+DAQ+ALRR +E+F+ N RF + CNY S+I
Sbjct: 92 TKIKNFAKTAPMGGAEFKIIFLDEADALTSDAQSALRRTMERFSNNCRFILSCNYSSRII 151
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSRC FRF L I RL+Y
Sbjct: 152 EPIQSRCAVFRFRRLSDEAIRKRLEY 177
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 105/198 (53%), Gaps = 36/198 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF L I RL+Y+ + + +++T DG
Sbjct: 131 MERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQVLSITEDG 190
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE-VNEDTIFTLLVS------------------ 101
+A++ +S GDMRK +N LQ+AA ++ ++ TI+ +
Sbjct: 191 YEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTATANPEDIRNLIETALRGNF 250
Query: 102 RVEKYRPSTL--DELVSHQDIISTI-----EIPESMLVDLVLK----------MSDIEYR 144
RV + + L +E +S +DI+ I E+ M++DL L + +I++R
Sbjct: 251 RVARKELNRLLYEEGLSGEDIVGQIYRAISEMDNRMILDLGLSEKRIVELVDIIGEIDFR 310
Query: 145 LAAGTSEKIQLSALIAAF 162
L G +EKIQL AL+A F
Sbjct: 311 LTEGATEKIQLEALLAHF 328
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 120/265 (45%), Gaps = 71/265 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG------TSEKIQLS 156
+EKYRP LD++ ++ TIE +S + ++ + L +G T+ + ++
Sbjct: 12 IEKYRPVRLDQVAGQEE---TIERLKSYVA-----TKNLPHLLFSGPPGVGKTASAVSIA 63
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
I + R+ ELNASD+RGI +VR +I FA T M + +K+I LDEADA+T+
Sbjct: 64 REIFGEDLWRENF--TELNASDERGIDVVRTKIKNFAKTAPMGGAEFKIIFLDEADALTS 121
Query: 217 DAQNALRRKL-------------------------------------------------- 226
DAQ+ALRR +
Sbjct: 122 DAQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKD 181
Query: 227 ---PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADE-VNEDTVYNSVGYPTKTEITNI 282
+T DG +A++ +S GDMRK +N LQ+AA ++ ++ T+Y + +I N+
Sbjct: 182 QVLSITEDGYEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTATANPEDIRNL 241
Query: 283 LRWLLNESMDLCYK-INRFIDENEL 306
+ L + + K +NR + E L
Sbjct: 242 IETALRGNFRVARKELNRLLYEEGL 266
Score = 40.8 bits (94), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 8/66 (12%)
Query: 462 EKGLALTDILTEI--------SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 513
E+GL+ DI+ +I + ++ L + E +V+LV + +I++RL G +EKIQL
Sbjct: 263 EEGLSGEDIVGQIYRAISEMDNRMILDLGLSEKRIVELVDIIGEIDFRLTEGATEKIQLE 322
Query: 514 ALIAAF 519
AL+A F
Sbjct: 323 ALLAHF 328
>sp|Q9HN27|RFCS_HALSA Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rfcS PE=3
SV=1
Length = 322
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 101/148 (68%), Gaps = 2/148 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ ++D ++LPHLLF GP GTGKT + ++ A++LY + LELNASD+RGI
Sbjct: 29 DITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGD-DWQDNFLELNASDERGI 87
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + + +Y++I LDEADA+T+DAQ+ALRR +E+F+ N RF + CNY
Sbjct: 88 DVVRDRIKDFARS-SFGGHNYRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYS 146
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI IQSRC FRF L + + L
Sbjct: 147 SKIIDPIQSRCAVFRFAQLGDDAVAAHL 174
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 106/188 (56%), Gaps = 28/188 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF L + + L + E E + T DG
Sbjct: 130 MEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLEHTDDG 189
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLV-SRVEKYRP----------- 108
A++ +DGDMR+ +N LQ AA+A D VNE+T++ + +R E+
Sbjct: 190 IDALVYAADGDMRRAINALQ-AASATGDSVNEETVYAITATARPEEIETMVTEALGGDFA 248
Query: 109 ---STLDELVSHQ-----DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+TLD+L++++ DII + ++ E+ V L+ ++ + +YR+A G +E++
Sbjct: 249 AARATLDDLLTNRGLAGGDIIDQVHRSVWEFDVEEAAAVRLLDRLGEADYRIAEGANERV 308
Query: 154 QLSALIAA 161
QL AL+A+
Sbjct: 309 QLEALLAS 316
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 105/222 (47%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG--TSEKIQLSALIA 160
VEKYRP L+++V H DI ++ + D+ + L AG + K S IA
Sbjct: 13 VEKYRPERLEDVVGHPDITERLQS--------YVDRDDLPHLLFAGPAGTGKTASSVSIA 64
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D + LELNASD+RGI +VRD+I FA + + +Y++I LDEADA+T+DAQ
Sbjct: 65 KELYGDDWQDNFLELNASDERGIDVVRDRIKDFARS-SFGGHNYRVIFLDEADALTDDAQ 123
Query: 220 NALRRKL---------------------PV------------------------------ 228
+ALRR + P+
Sbjct: 124 SALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGL 183
Query: 229 --TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
T DG A++ +DGDMR+ +N LQ AA+A D VNE+TVY
Sbjct: 184 EHTDDGIDALVYAADGDMRRAINALQ-AASATGDSVNEETVY 224
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 37/56 (66%)
Query: 463 KGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 518
+GLA DI+ ++ V ++ E+ V L+ ++ + +YR+A G +E++QL AL+A+
Sbjct: 261 RGLAGGDIIDQVHRSVWEFDVEEAAAVRLLDRLGEADYRIAEGANERVQLEALLAS 316
>sp|B0R7H7|RFCS_HALS3 Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1
Length = 322
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 101/148 (68%), Gaps = 2/148 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ ++D ++LPHLLF GP GTGKT + ++ A++LY + LELNASD+RGI
Sbjct: 29 DITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGD-DWQDNFLELNASDERGI 87
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VRD+I FA + + +Y++I LDEADA+T+DAQ+ALRR +E+F+ N RF + CNY
Sbjct: 88 DVVRDRIKDFARS-SFGGHNYRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYS 146
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI IQSRC FRF L + + L
Sbjct: 147 SKIIDPIQSRCAVFRFAQLGDDAVAAHL 174
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 106/188 (56%), Gaps = 28/188 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY SKI IQSRC FRF L + + L + E E + T DG
Sbjct: 130 MEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLEHTDDG 189
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLV-SRVEKYRP----------- 108
A++ +DGDMR+ +N LQ AA+A D VNE+T++ + +R E+
Sbjct: 190 IDALVYAADGDMRRAINALQ-AASATGDSVNEETVYAITATARPEEIETMVTEALGGDFA 248
Query: 109 ---STLDELVSHQ-----DIISTI-------EIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+TLD+L++++ DII + ++ E+ V L+ ++ + +YR+A G +E++
Sbjct: 249 AARATLDDLLTNRGLAGGDIIDQVHRSVWEFDVEEAAAVRLLDRLGEADYRIAEGANERV 308
Query: 154 QLSALIAA 161
QL AL+A+
Sbjct: 309 QLEALLAS 316
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 105/222 (47%), Gaps = 66/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG--TSEKIQLSALIA 160
VEKYRP L+++V H DI ++ + D+ + L AG + K S IA
Sbjct: 13 VEKYRPERLEDVVGHPDITERLQS--------YVDRDDLPHLLFAGPAGTGKTASSVSIA 64
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D + LELNASD+RGI +VRD+I FA + + +Y++I LDEADA+T+DAQ
Sbjct: 65 KELYGDDWQDNFLELNASDERGIDVVRDRIKDFARS-SFGGHNYRVIFLDEADALTDDAQ 123
Query: 220 NALRRKL---------------------PV------------------------------ 228
+ALRR + P+
Sbjct: 124 SALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGL 183
Query: 229 --TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
T DG A++ +DGDMR+ +N LQ AA+A D VNE+TVY
Sbjct: 184 EHTDDGIDALVYAADGDMRRAINALQ-AASATGDSVNEETVY 224
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 37/56 (66%)
Query: 463 KGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 518
+GLA DI+ ++ V ++ E+ V L+ ++ + +YR+A G +E++QL AL+A+
Sbjct: 261 RGLAGGDIIDQVHRSVWEFDVEEAAAVRLLDRLGEADYRIAEGANERVQLEALLAS 316
>sp|Q8TSX5|RFCS_METAC Replication factor C small subunit OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rfcS
PE=3 SV=1
Length = 338
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 98/146 (67%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++ LPHLLF GPPG GKT + ++ AR+++ + + ELNASD+RGI IVR
Sbjct: 36 RLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDLWRENFTELNASDERGIDIVR 95
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
++I FA T + + +K+I LDEADA+T DAQ+ALRR +E+F++N RF + CNY SKI
Sbjct: 96 NKIKNFAKTAPIGGAPFKIIFLDEADALTADAQSALRRTMERFSSNCRFILSCNYSSKII 155
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDY 441
IQSRC +RF L I RL+Y
Sbjct: 156 EPIQSRCAVYRFRRLSDEAIKERLEY 181
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 107/203 (52%), Gaps = 36/203 (17%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F++N RF + CNY SKI IQSRC +RF L I RL+Y+ + +++T G
Sbjct: 135 MERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQGLSITEGG 194
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE-VNEDTIFTLLVS------------------ 101
+A+I ++ GDMRK +N LQ+AA D+ ++ +TI+ +
Sbjct: 195 YEALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPEEIKNLIETALRGNF 254
Query: 102 RVEKYRPSTL--DELVSHQDIISTI-----EIPESMLVDLVLKMSDI----------EYR 144
R+ + + L +E +S +DI+ I E+ M++DL L DI ++R
Sbjct: 255 RIARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMVLDLGLTERDIVALVDVIGETDFR 314
Query: 145 LAAGTSEKIQLSALIAAFNSARD 167
L G SEKIQL AL+A F +R+
Sbjct: 315 LTEGASEKIQLEALLAHFALSRE 337
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 121/265 (45%), Gaps = 71/265 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG------TSEKIQLS 156
+EKYRP L++ V+ QD TIE +S + ++ + L +G T+ + ++
Sbjct: 16 IEKYRPVRLNQ-VAGQD--ETIERLKSYVA-----TKNLPHLLFSGPPGVGKTASAVSIA 67
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
I + R+ ELNASD+RGI IVR++I FA T + + +K+I LDEADA+T
Sbjct: 68 REIFGEDLWRENF--TELNASDERGIDIVRNKIKNFAKTAPIGGAPFKIIFLDEADALTA 125
Query: 217 DAQNALRR---------------------------------------------------- 224
DAQ+ALRR
Sbjct: 126 DAQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGD 185
Query: 225 -KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADE-VNEDTVYNSVGYPTKTEITNI 282
L +T G +A+I ++ GDMRK +N LQ+AA D+ ++ +T+Y + EI N+
Sbjct: 186 QGLSITEGGYEALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPEEIKNL 245
Query: 283 LRWLLNESMDLCYK-INRFIDENEL 306
+ L + + K +NR + E L
Sbjct: 246 IETALRGNFRIARKELNRLLYEEGL 270
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 462 EKGLALTDILTEI--------SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 513
E+GL+ DI+ +I +L+V L + E +V LV + + ++RL G SEKIQL
Sbjct: 267 EEGLSGEDIVGQIYRVVSEMDNLMVLDLGLTERDIVALVDVIGETDFRLTEGASEKIQLE 326
Query: 514 ALIAAFNSARD 524
AL+A F +R+
Sbjct: 327 ALLAHFALSRE 337
>sp|P53016|RFC4_CAEEL Replication factor C subunit 4 OS=Caenorhabditis elegans GN=rfc-4
PE=1 SV=1
Length = 334
Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 96/140 (68%), Gaps = 5/140 (3%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LPHLLFYGPPGTGKT+ LA R+L+ K F+ VL+LNASD+RGI +VR +I F+ +
Sbjct: 47 DLPHLLFYGPPGTGKTSAALAFCRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKS 106
Query: 365 KTMHKS-----SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
H K+IILDE DAMT +AQ A+RR+IE F+ RF +ICNY+S++ P +
Sbjct: 107 SLGHSHREDVLKLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVV 166
Query: 420 SRCTRFRFGPLDSSLIMSRL 439
SRC +FRF L + + + RL
Sbjct: 167 SRCAKFRFKSLPAEIQVQRL 186
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE F+ RF +ICNY+S++ P + SRC +FRF L + + + RL + + E ++ D
Sbjct: 142 IEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGTPMSDDE 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
K +++ S+GD+R+ + LQS A
Sbjct: 202 LKQVMEYSEGDLRRAVCTLQSLA 224
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 75/137 (54%), Gaps = 21/137 (15%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
+++ EKYRP TLD+ +++QD + T ++ L+ D+ + L G + SA
Sbjct: 14 VLTWTEKYRPKTLDD-IAYQDEVVT-------MLKGALQGRDLPHLLFYGPPGTGKTSAA 65
Query: 159 IA------AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKS-----SYKLII 207
+A N D+ VL+LNASD+RGI +VR +I F+ + H K+II
Sbjct: 66 LAFCRQLFPKNIFHDR--VLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIII 123
Query: 208 LDEADAMTNDAQNALRR 224
LDE DAMT +AQ A+RR
Sbjct: 124 LDEVDAMTREAQAAMRR 140
>sp|Q5UZE5|RFCS_HALMA Replication factor C small subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rfcS PE=3 SV=2
Length = 325
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 94/135 (69%), Gaps = 2/135 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++ N+L H+LF GP GTGKTT A AR+LY + LELNASD+RGI +VR
Sbjct: 37 RLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGD-DWREHFLELNASDERGIDVVR 95
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA T + Y++I LDEADA+T+DAQ+ALRR +E+F+ NVRF + CNY S+I
Sbjct: 96 DRIKNFART-SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQII 154
Query: 416 PAIQSRCTRFRFGPL 430
IQSRC FRF PL
Sbjct: 155 DPIQSRCAVFRFSPL 169
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 28/189 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ NVRF + CNY S+I IQSRC FRF PL + + + +E + +T DG
Sbjct: 134 MEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDG 193
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-VSRVEKYRP----------- 108
A++ +DGDMRK +N LQ AA+ D V+E ++ + +R E+ R
Sbjct: 194 LDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFT 252
Query: 109 ---STLDELVSHQDI------------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
+TLD L++ + I I +I + V ++ ++ + +YR+ G +E++
Sbjct: 253 ASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDDAAVRVLERIGETDYRITRGANERV 312
Query: 154 QLSALIAAF 162
QL A++A+
Sbjct: 313 QLEAMLASL 321
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 109/239 (45%), Gaps = 60/239 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
+EKYRP TLD+++ H++I+ ++ S +S + + AGT + +A+
Sbjct: 17 IEKYRPQTLDDVMGHENIVGRLKSYVSRN-----DLSHMLFSGPAGTGKTTCATAIAREL 71
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
+ LELNASD+RGI +VRD+I FA T + Y++I LDEADA+T+DAQ+AL
Sbjct: 72 YGDDWREHFLELNASDERGIDVVRDRIKNFART-SFGGVEYRIIFLDEADALTSDAQSAL 130
Query: 223 RRKL-----------------------------------------------------PVT 229
RR + +T
Sbjct: 131 RRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELT 190
Query: 230 PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN 288
DG A++ +DGDMRK +N LQ AA+ D V+E VY EI +++ L+
Sbjct: 191 EDGLDALVYAADGDMRKAINGLQ-AASVSGDTVDESAVYAITSTARPEEIRTMVQSALD 248
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 36/58 (62%)
Query: 462 EKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 519
E+G+A DI+ ++ + +I + V ++ ++ + +YR+ G +E++QL A++A+
Sbjct: 264 EEGIAGGDIIDQLHRSIWEFDIDDDAAVRVLERIGETDYRITRGANERVQLEAMLASL 321
>sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1
Length = 315
Score = 149 bits (375), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 101/148 (68%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++++ +PHLLF G PG GKTT LA A+ LY + + LELN+SD+RGI
Sbjct: 22 EIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGET-WRENFLELNSSDERGI 80
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ FA TK + + +K+I LDE+DA+T+DAQNALRR +EK++ RF + CNY
Sbjct: 81 DVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYP 140
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI P IQSRC FRF PL + ++ L
Sbjct: 141 SKIIPPIQSRCAIFRFSPLKTEDLVENL 168
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 28/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RF + CNY SKI P IQSRC FRF PL + ++ L + E+E + + G
Sbjct: 124 MEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKENLTLEKGG 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------------------LV 100
AII +S+GDMRK +N+LQ+AA A +D V E+ ++ + V
Sbjct: 184 IDAIIYVSEGDMRKAINVLQTAA-AVSDTVTEEIVYKVASKARPDEIKKMTQLALNGKFV 242
Query: 101 SRVEKYRPSTLDELVSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
E+ +D +S +DI + ++I E V LV + + ++R+ G++E+I
Sbjct: 243 ESREQLYNLMIDWGMSGEDILIQIFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERI 302
Query: 154 QLSALIA 160
QLSAL+A
Sbjct: 303 QLSALLA 309
Score = 99.0 bits (245), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 107/241 (44%), Gaps = 63/241 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLK--MSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL E+V H +II L + V K M + + + G + AL
Sbjct: 6 VEKYRPQTLSEVVGHHEIIKR-------LTNYVEKKSMPHLLFSGSPGVGKTTAALALAK 58
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELN+SD+RGI ++R ++ FA TK + + +K+I LDE+DA+T+DAQN
Sbjct: 59 DLYGETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQN 118
Query: 221 ALRRKLPVTPD------------------------------------------------- 231
ALRR + D
Sbjct: 119 ALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKENLT 178
Query: 232 ----GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
G AII +S+GDMRK +N+LQ+AA A +D V E+ VY EI + + L
Sbjct: 179 LEKGGIDAIIYVSEGDMRKAINVLQTAA-AVSDTVTEEIVYKVASKARPDEIKKMTQLAL 237
Query: 288 N 288
N
Sbjct: 238 N 238
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 461 IEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
I+ G++ DIL +I V L+I E V LV + + ++R+ G++E+IQLSAL+A
Sbjct: 253 IDWGMSGEDILIQIFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQLSALLA 309
>sp|Q5UP47|RFCS3_MIMIV Putative replication factor C small subunit L499 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_L499 PE=3 SV=1
Length = 344
Score = 149 bits (375), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 102/154 (66%), Gaps = 7/154 (4%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + +FI+ LPHLLF+GP G+GKT+TI CAR++Y K N M+LELNAS++RGI
Sbjct: 36 DIILSLKKFIESRTLPHLLFFGPSGSGKTSTIKCCAREIYGK-YINYMILELNASNERGI 94
Query: 352 GIVRDQIFQFASTKTM------HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
VR +I F S+K+ + +KL+ILDE D+MT +AQ LR+ IEK + RFC
Sbjct: 95 ETVRTKIKNFVSSKSSIFLPMGVRDIFKLVILDEIDSMTVEAQGMLRQTIEKNSGTTRFC 154
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+ICN + KI A+QSRC FRF PL+ + RL
Sbjct: 155 LICNDIDKINIALQSRCASFRFSPLNELDMHGRL 188
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK + RFC+ICN + KI A+QSRC FRF PL+ + RL + E V +
Sbjct: 144 IEKNSGTTRFCLICNDIDKINIALQSRCASFRFSPLNELDMHGRLSDICRLEGVKYEKEA 203
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL 98
+II +S GDMR +N LQ +N + ++ +
Sbjct: 204 INSIIKISKGDMRSAINTLQHVNLVIGGSINTEDVYKI 241
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 13/131 (9%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE-IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA 161
VEKYRP +D ++S++DII +++ ES + +L + +G+ + +
Sbjct: 20 VEKYRPQEIDHIISNRDIILSLKKFIESRTLPHLL------FFGPSGSGKTSTIKCCARE 73
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTM------HKSSYKLIILDEADAMT 215
+LELNAS++RGI VR +I F S+K+ + +KL+ILDE D+MT
Sbjct: 74 IYGKYINYMILELNASNERGIETVRTKIKNFVSSKSSIFLPMGVRDIFKLVILDEIDSMT 133
Query: 216 NDAQNALRRKL 226
+AQ LR+ +
Sbjct: 134 VEAQGMLRQTI 144
>sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1
Length = 315
Score = 149 bits (375), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 104/154 (67%), Gaps = 3/154 (1%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++++ +PHLLF G PG GKTT LA A+ LY + + LELN+SD+RGI
Sbjct: 22 EIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGET-WRENFLELNSSDERGI 80
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ FA TK + + +K+I LDE+DA+T+DAQNALRR +EK++ RF + CNY
Sbjct: 81 DVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYP 140
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDIS 445
SKI P IQSRC FRF PL + ++ L DIS
Sbjct: 141 SKIIPPIQSRCAIFRFSPLKTEDLVENL--KDIS 172
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 28/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RF + CNY SKI P IQSRC FRF PL + ++ L + E+E + + G
Sbjct: 124 MEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKGG 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------------------LV 100
AII +S+GDMRK +N+LQ+AA A +D V E+ ++ + V
Sbjct: 184 IDAIIYVSEGDMRKAINVLQTAA-AVSDTVTEEIVYKVASKARPDEIKKMTHLALNGKFV 242
Query: 101 SRVEKYRPSTLDELVSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
E+ +D +S +DI + ++I E V LV + + ++R+ G++E+I
Sbjct: 243 EAKEQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERI 302
Query: 154 QLSALIA 160
QLSAL+A
Sbjct: 303 QLSALLA 309
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 108/241 (44%), Gaps = 63/241 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLK--MSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL E+V H +II L + V K M + + + G + AL
Sbjct: 6 VEKYRPETLPEVVGHHEIIKR-------LTNYVEKKSMPHLLFSGSPGVGKTTAALALAK 58
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELN+SD+RGI ++R ++ FA TK + + +K+I LDE+DA+T+DAQN
Sbjct: 59 DLYGETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQN 118
Query: 221 ALRRKL---------------------PV-------------TPDGKKAIIDLS------ 240
ALRR + P+ T D + + D+S
Sbjct: 119 ALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLT 178
Query: 241 -------------DGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+GDMRK +N+LQ+AA A +D V E+ VY EI + L
Sbjct: 179 LEKGGIDAIIYVSEGDMRKAINVLQTAA-AVSDTVTEEIVYKVASKARPDEIKKMTHLAL 237
Query: 288 N 288
N
Sbjct: 238 N 238
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 461 IEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
I+ G++ DIL ++ V L+I E V LV + + ++R+ G++E+IQLSAL+A
Sbjct: 253 IDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQLSALLA 309
>sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcS PE=3 SV=1
Length = 315
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 100/148 (67%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++++ +PHLLF G PG GKTT LA A+ LY + LELN+SD+RGI
Sbjct: 22 EIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDT-WRENFLELNSSDERGI 80
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ FA TK + + +K+I LDE+DA+T+DAQNALRR +EK++ RF + CNY
Sbjct: 81 DVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYP 140
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI P IQSRC FRF PL + ++ L
Sbjct: 141 SKIIPPIQSRCAIFRFSPLKTEDLVENL 168
Score = 105 bits (263), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 103/187 (55%), Gaps = 28/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RF + CNY SKI P IQSRC FRF PL + ++ L + E+E +N+ G
Sbjct: 124 MEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLEKGG 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------------------LV 100
AII +S+GDMRK +N+LQ+AA A +DE+ E+ ++ + V
Sbjct: 184 IDAIIYVSEGDMRKAINVLQTAA-AVSDEITEEIVYKVASKARPDEIKKMTQLALNGKFV 242
Query: 101 SRVEKYRPSTLDELVSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
E+ +D +S +DI + ++I E V LV + + ++R+ G++E+I
Sbjct: 243 EAREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERI 302
Query: 154 QLSALIA 160
QLSAL+A
Sbjct: 303 QLSALLA 309
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 108/241 (44%), Gaps = 63/241 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLK--MSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL E+V H +II L + V K M + + + G + AL
Sbjct: 6 VEKYRPETLSEVVGHHEIIKR-------LTNYVEKKSMPHLLFSGSPGVGKTTAALALAK 58
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELN+SD+RGI ++R ++ FA TK + + +K+I LDE+DA+T+DAQN
Sbjct: 59 DLYGDTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQN 118
Query: 221 ALRRKLPVTPD------------------------------------------------- 231
ALRR + D
Sbjct: 119 ALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLN 178
Query: 232 ----GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
G AII +S+GDMRK +N+LQ+AA A +DE+ E+ VY EI + + L
Sbjct: 179 LEKGGIDAIIYVSEGDMRKAINVLQTAA-AVSDEITEEIVYKVASKARPDEIKKMTQLAL 237
Query: 288 N 288
N
Sbjct: 238 N 238
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 461 IEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
I+ G++ DIL ++ V L+I E V LV + + ++R+ G++E+IQLSAL+A
Sbjct: 253 IDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQLSALLA 309
>sp|A9A6K6|RFCS_METM6 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1
Length = 315
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 100/148 (67%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++++ +PHLLF G PG GKTT LA A+ LY + LELN+SD+RGI
Sbjct: 22 EIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDT-WRENFLELNSSDERGI 80
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ FA TK + + +K+I LDE+DA+T+DAQNALRR +EK++ RF + CNY
Sbjct: 81 DVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYP 140
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI P IQSRC FRF PL + ++ L
Sbjct: 141 SKIIPPIQSRCAIFRFSPLKTEDLVENL 168
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 28/187 (14%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RF + CNY SKI P IQSRC FRF PL + ++ L + E+E + + G
Sbjct: 124 MEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKGG 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL--------------------LV 100
AII +S+GDMRK +N+LQ+AA A +D V E+ ++ + V
Sbjct: 184 IDAIIYVSEGDMRKAINVLQTAA-AVSDTVTEEIVYKVASKARPDEIKKMTQLALNGKFV 242
Query: 101 SRVEKYRPSTLDELVSHQDI-------ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKI 153
E+ +D +S +DI + ++I E V LV + + ++R+ G++E+I
Sbjct: 243 EAREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERI 302
Query: 154 QLSALIA 160
QLSAL+A
Sbjct: 303 QLSALLA 309
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 109/241 (45%), Gaps = 63/241 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLK--MSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL E+V H +II L + V K M + + + G + AL
Sbjct: 6 VEKYRPETLPEVVGHHEIIKR-------LTNYVEKKSMPHLLFSGSPGVGKTTAALALAK 58
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ LELN+SD+RGI ++R ++ FA TK + + +K+I LDE+DA+T+DAQN
Sbjct: 59 DLYGDTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQN 118
Query: 221 ALRRKL---------------------PV-------------TPDGKKAIIDLS------ 240
ALRR + P+ T D + + D+S
Sbjct: 119 ALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLT 178
Query: 241 -------------DGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+GDMRK +N+LQ+AA A +D V E+ VY EI + + L
Sbjct: 179 LEKGGIDAIIYVSEGDMRKAINVLQTAA-AVSDTVTEEIVYKVASKARPDEIKKMTQLAL 237
Query: 288 N 288
N
Sbjct: 238 N 238
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 461 IEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
I+ G++ DIL ++ V L+I E V LV + + ++R+ G++E+IQLSAL+A
Sbjct: 253 IDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQLSALLA 309
>sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1
Length = 315
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 99/148 (66%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++++ +PHLLF G PG GKTT L A+ LY + LELN+SD+RGI
Sbjct: 22 EIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGNT-WKENFLELNSSDERGI 80
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
++R ++ FA TK + + +K+I LDE+DA+T+DAQNALRR +EK++ RF + CNY
Sbjct: 81 DVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYP 140
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
SKI P IQSRC FRF PL + ++ L
Sbjct: 141 SKIIPPIQSRCAIFRFSPLKTEDLVKNL 168
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 98/186 (52%), Gaps = 26/186 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK++ RF + CNY SKI P IQSRC FRF PL + ++ L + E+E +NV G
Sbjct: 124 MEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKESINVEKSG 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT----------------AHADEVNEDTIFTL---LVS 101
AII +S+GDMRK +N+LQ+ A A DE+ + T L V
Sbjct: 184 MDAIIYVSEGDMRKAINVLQTGAAVSKNINETVIYKVASKARPDEIKKMTELALNGKFVE 243
Query: 102 RVEKYRPSTLDELVSHQDII-------STIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
E+ +D +S +DII +EI E V LV + + ++R+ G +E+IQ
Sbjct: 244 AREQLYKLMIDWGMSGEDIIIQIFREVPNLEISEKEKVHLVEAIGECDFRIVEGANERIQ 303
Query: 155 LSALIA 160
LSAL+A
Sbjct: 304 LSALLA 309
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 116/258 (44%), Gaps = 75/258 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP LDE+V HQ+II L + V K S + + L +G+ + AA
Sbjct: 6 VEKYRPENLDEVVGHQEIIKR-------LKNYVEKKS-MPHLLFSGSP---GVGKTTAAL 54
Query: 163 NSARD------KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
A+D K LELN+SD+RGI ++R ++ FA TK + + +K+I LDE+DA+T+
Sbjct: 55 CLAKDLYGNTWKENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTS 114
Query: 217 DAQNALRRKLPVTPD--------------------------------------------- 231
DAQNALRR + D
Sbjct: 115 DAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEK 174
Query: 232 --------GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
G AII +S+GDMRK +N+LQ+ A A + +NE +Y EI +
Sbjct: 175 ESINVEKSGMDAIIYVSEGDMRKAINVLQTGA-AVSKNINETVIYKVASKARPDEIKKMT 233
Query: 284 RWLLN----ESMDLCYKI 297
LN E+ + YK+
Sbjct: 234 ELALNGKFVEAREQLYKL 251
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 455 KIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSA 514
++ ++ I+ G++ DI+ +I V LEI E V LV + + ++R+ G +E+IQLSA
Sbjct: 247 QLYKLMIDWGMSGEDIIIQIFREVPNLEISEKEKVHLVEAIGECDFRIVEGANERIQLSA 306
Query: 515 LIA 517
L+A
Sbjct: 307 LLA 309
>sp|Q5UQ72|RFCS4_MIMIV Putative replication factor C small subunit L510 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R510 PE=3 SV=1
Length = 363
Score = 145 bits (366), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 74/152 (48%), Positives = 99/152 (65%), Gaps = 11/152 (7%)
Query: 303 ENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362
+ E+ H LFYGPPGTGKT+ ILA R+++ K F V+E NASDDRGI VR++I A
Sbjct: 37 KGEMTHFLFYGPPGTGKTSAILAMGREIF-KEHFQNRVIEFNASDDRGINAVREKITNEA 95
Query: 363 STKTMHKS--------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
SYK+IILDEAD+MT++AQ+ALR IIE+++T RFC ICNY++KI
Sbjct: 96 KKYVAEIKLEDGTIIPSYKIIILDEADSMTDEAQDALRVIIEQYSTATRFCFICNYITKI 155
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRLDYDDISF 446
AI+SRC+ F L ++ +L +DIS
Sbjct: 156 TDAIKSRCSSVYFKKLSDECMVEKL--NDISL 185
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE+++T RFC ICNY++KIT AI+SRC+ F L ++ +L+ + +E + + +
Sbjct: 136 IEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDECMVEKLNDISLKESMELPKNI 195
Query: 61 KKAIIDLSDGDMRKVLNILQS 81
IID+S+GDMRK + +LQ+
Sbjct: 196 LHTIIDVSNGDMRKAIMLLQN 216
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 25/138 (18%)
Query: 100 VSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 159
V +EKYRP L+++ Q+++ L K ++ + L G + SA++
Sbjct: 7 VPWIEKYRPKKLEDITQSQNLLD--------LFKNSTKKGEMTHFLFYGPPGTGKTSAIL 58
Query: 160 AAFNSARDKLE------VLELNASDDRGIGIVRDQIFQFASTKTMHKS--------SYKL 205
A R+ + V+E NASDDRGI VR++I A SYK+
Sbjct: 59 AM---GREIFKEHFQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKI 115
Query: 206 IILDEADAMTNDAQNALR 223
IILDEAD+MT++AQ+ALR
Sbjct: 116 IILDEADSMTDEAQDALR 133
>sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcS PE=1 SV=1
Length = 319
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 99/148 (66%), Gaps = 1/148 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ +++ +PHLLF GPPGTGKT T +A AR L+ + + +E+NASD+RGI
Sbjct: 24 EVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERGI 82
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR +I +FA T + + +K+I LDEADA+T DAQ ALRR +E ++ + RF + CNY+
Sbjct: 83 DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
S+I IQSRC FRF P+ + RL
Sbjct: 143 SRIIEPIQSRCAVFRFKPVPKEAMKKRL 170
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 104/195 (53%), Gaps = 36/195 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ + RF + CNY+S+I IQSRC FRF P+ + RL + E+E V +T DG
Sbjct: 126 MEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDG 185
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV----- 115
+A+I +S GD RK +N LQ AA A + V+ DTI+ + + RP + EL+
Sbjct: 186 LEALIYISGGDFRKAINALQGAA-AIGEVVDADTIYQITAT----ARPEEMTELIQTALK 240
Query: 116 -------------------SHQDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGT 149
S +DI++ ++ I +S+ V L+ K+ ++++RL G
Sbjct: 241 GNFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGA 300
Query: 150 SEKIQLSALIAAFNS 164
+E+IQL A +A ++
Sbjct: 301 NERIQLDAYLAYLST 315
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 111/245 (45%), Gaps = 71/245 (28%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TLDE+V ++I ++ ++ +I + L +G + + IA
Sbjct: 8 VEKYRPRTLDEVVGQDEVIQRLK--------GYVERKNIPHLLFSGPPGTGKTATAIAL- 58
Query: 163 NSARD------KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 216
ARD + +E+NASD+RGI +VR +I +FA T + + +K+I LDEADA+T
Sbjct: 59 --ARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA 116
Query: 217 DAQNALRRKL---------------------------------PV--------------- 228
DAQ ALRR + PV
Sbjct: 117 DAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK 176
Query: 229 -----TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
T DG +A+I +S GD RK +N LQ AA A + V+ DT+Y E+T ++
Sbjct: 177 EGVKITEDGLEALIYISGGDFRKAINALQGAA-AIGEVVDADTIYQITATARPEEMTELI 235
Query: 284 RWLLN 288
+ L
Sbjct: 236 QTALK 240
Score = 39.7 bits (91), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 39/61 (63%)
Query: 461 IEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 520
+E G++ DI+ ++ + + I +S+ V L+ K+ ++++RL G +E+IQL A +A +
Sbjct: 255 VEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLS 314
Query: 521 S 521
+
Sbjct: 315 T 315
>sp|Q3ITJ2|RFCS_NATPD Replication factor C small subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1
Length = 325
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 95/140 (67%), Gaps = 2/140 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++I +N+LPHLLF GP G GKTT A A+++Y + LELNASD RGI +VR
Sbjct: 35 RLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGD-DWRENFLELNASDQRGIDVVR 93
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
D+I FA + +++I LDEADA+T+DAQ+ALRR +E+F+ N RF + CNY S+I
Sbjct: 94 DRIKSFARA-SFGGYDHRIIFLDEADALTSDAQSALRRTMEQFSDNTRFILSCNYSSQII 152
Query: 416 PAIQSRCTRFRFGPLDSSLI 435
IQSRC FRF PL + +
Sbjct: 153 DPIQSRCAVFRFSPLGDAAV 172
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 81/144 (56%), Gaps = 8/144 (5%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+F+ N RF + CNY S+I IQSRC FRF PL + + ++ + + E + +T DG
Sbjct: 132 MEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGIELTDDG 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
A++ +DGDMRK +N LQ+AA V+E+ ++T+ + RP + E+V+
Sbjct: 192 VDALVYAADGDMRKAINGLQAAAVMGG-TVDEEAVYTITST----ARPEEIREMVTEAMD 246
Query: 118 QDIISTIEIPESMLVDLVLKMSDI 141
D + E++L D+ + DI
Sbjct: 247 GDFTAARSQLETLLTDVGIAGGDI 270
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 112/253 (44%), Gaps = 70/253 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE--KIQLSALIA 160
+EKYRP TLD++V H+ I ++ + +D+ + L AG + K + IA
Sbjct: 15 IEKYRPQTLDDIVGHESITERLK--------QYIAQNDLPHLLFAGPAGVGKTTAATAIA 66
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
D E LELNASD RGI +VRD+I FA + +++I LDEADA+T+DAQ
Sbjct: 67 KEVYGDDWRENFLELNASDQRGIDVVRDRIKSFARA-SFGGYDHRIIFLDEADALTSDAQ 125
Query: 220 NALRRKL---------------------PV------------------------------ 228
+ALRR + P+
Sbjct: 126 SALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGI 185
Query: 229 --TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
T DG A++ +DGDMRK +N LQ+AA V+E+ VY EI R +
Sbjct: 186 ELTDDGVDALVYAADGDMRKAINGLQAAAVMGG-TVDEEAVYTITSTARPEEI----REM 240
Query: 287 LNESMDLCYKINR 299
+ E+MD + R
Sbjct: 241 VTEAMDGDFTAAR 253
>sp|Q6L1I0|RFCS_PICTO Replication factor C small subunit OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=rfcS PE=3 SV=1
Length = 318
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 90/140 (64%), Gaps = 1/140 (0%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
F+ +LPHL+F GP GTGKT+T +A +L+ + LELNASD+RGI I+R+ I
Sbjct: 30 FVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGD-DWKENFLELNASDERGIDIIRNNIK 88
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
FA + +K +K+I LDEAD +TN+AQ ALRR +E F + RF CNY SKI P IQ
Sbjct: 89 DFAKIRPSNKLGFKIIFLDEADQLTNEAQAALRRTMEMFYSTTRFIFSCNYSSKIIPPIQ 148
Query: 420 SRCTRFRFGPLDSSLIMSRL 439
SRC RF PLD + +L
Sbjct: 149 SRCVVLRFRPLDKEAMERKL 168
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 97/185 (52%), Gaps = 25/185 (13%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F + RF CNY SKI P IQSRC RF PLD + +L + + EK ++ D
Sbjct: 124 MEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNEKFDIDDDS 183
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH----------ADEVNED---TIFTLLVSRVEKYR 107
AI ++SDGDMRK +N++Q+ + + E+N++ + +L ++
Sbjct: 184 LDAIYEISDGDMRKAINVMQAIQSTGEIKPSKIYEISGEINKNEYKNLISLSLNGAFSDA 243
Query: 108 PSTLDEL-----VSHQDIISTIE-------IPESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
S LD++ +S DII + I +++++ +++ E+R++ G S+ +Q+
Sbjct: 244 KSLLDKMLVDYGLSGIDIIRGMHSAIRNERIANRQKLEILIALAEFEFRISQGGSDNVQM 303
Query: 156 SALIA 160
AL+A
Sbjct: 304 DALLA 308
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 102/242 (42%), Gaps = 66/242 (27%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA-- 160
EKYRP LD+++ + I+T++ +K D+ + + AG + + S IA
Sbjct: 6 TEKYRPKRLDDVIGEDENINTLK--------SFVKNGDLPHLIFAGPAGTGKTSTAIALT 57
Query: 161 -AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
K LELNASD+RGI I+R+ I FA + +K +K+I LDEAD +TN+AQ
Sbjct: 58 IELFGDDWKENFLELNASDERGIDIIRNNIKDFAKIRPSNKLGFKIIFLDEADQLTNEAQ 117
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR K
Sbjct: 118 AALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNEKF 177
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
+ D AI ++SDGDMRK +N++Q A E+ +Y G K E N++
Sbjct: 178 DIDDDSLDAIYEISDGDMRKAINVMQ--AIQSTGEIKPSKIYEISGEINKNEYKNLISLS 235
Query: 287 LN 288
LN
Sbjct: 236 LN 237
Score = 33.1 bits (74), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 34/57 (59%)
Query: 461 IEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
++ GL+ DI+ + + I +++++ +++ E+R++ G S+ +Q+ AL+A
Sbjct: 252 VDYGLSGIDIIRGMHSAIRNERIANRQKLEILIALAEFEFRISQGGSDNVQMDALLA 308
>sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1
Length = 321
Score = 139 bits (349), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 92/144 (63%), Gaps = 1/144 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ ++ LPHLLF G G GKTT +A AR+++ +N ELNASD+RGI
Sbjct: 25 DVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMFGDT-WNMNFRELNASDERGI 83
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI QFA T + +++K++ LDEADA+T DAQ ALRR +E + RF + CNY
Sbjct: 84 DVVRNQIKQFARTAPLGDATFKILFLDEADALTQDAQAALRRTMENYAETCRFILSCNYS 143
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLI 435
SKI IQSRC +RF PL I
Sbjct: 144 SKIIDPIQSRCAIYRFRPLTDEAI 167
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 115/270 (42%), Gaps = 69/270 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP L E+V QD++ + + L L+ S AG + AL
Sbjct: 9 IEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGS-------AGVGKTTCAVALAR 61
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ ELNASD+RGI +VR+QI QFA T + +++K++ LDEADA+T DAQ
Sbjct: 62 EMFGDTWNMNFRELNASDERGIDVVRNQIKQFARTAPLGDATFKILFLDEADALTQDAQA 121
Query: 221 ALRRKL---------------------------------PVTPD---------GKK---- 234
ALRR + P+T + KK
Sbjct: 122 ALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIARIAKKEGIT 181
Query: 235 -------AIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
AI +S GDMRK +N LQ AA +D V + +Y EIT++L L
Sbjct: 182 IDEGAYVAITYVSLGDMRKAINALQGAAIV-SDHVTAENIYAITSNAKPQEITDLLARCL 240
Query: 288 NESMDLCYKI------NRFIDENELPHLLF 311
+ ++ ++ I NEL + L+
Sbjct: 241 EGDFETAERMLHALMYDKGIAPNELLNQLY 270
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 29/188 (15%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF + CNY SKI IQSRC +RF PL I + + ++E + +
Sbjct: 127 MENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIARIAKKEGITIDEGA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL-----------LVSRVEKYRPS 109
AI +S GDMRK +N LQ AA +D V + I+ + L++R +
Sbjct: 187 YVAITYVSLGDMRKAINALQGAAIV-SDHVTAENIYAITSNAKPQEITDLLARCLEGDFE 245
Query: 110 TLDELVS-----------------HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEK 152
T + ++ +++I + + + VDL+ + + ++R++ G
Sbjct: 246 TAERMLHALMYDKGIAPNELLNQLYREISRSETLDRRLKVDLIDHLGEADFRMSEGADAD 305
Query: 153 IQLSALIA 160
IQ+ AL+A
Sbjct: 306 IQMDALLA 313
>sp|A3CUX9|RFCS_METMJ Replication factor C small subunit OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=rfcS PE=3 SV=1
Length = 322
Score = 139 bits (349), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 93/145 (64%), Gaps = 1/145 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ ++ ++ LPHLLF G G GKTT +A AR+ + + + E+NASD+RGI
Sbjct: 25 DIVVRLQSYVKTGNLPHLLFTGSAGIGKTTAAVALAREFFGDS-WQTNFREMNASDERGI 83
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI +FA T + +++K++ LDEADA+T DAQ ALRR +E + RF + CNY
Sbjct: 84 DVVRNQIKEFARTSPLAGATFKILFLDEADALTTDAQAALRRTMETYARTCRFILSCNYS 143
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIM 436
SKI IQSRC +RF PLD ++
Sbjct: 144 SKIIDPIQSRCAIYRFRPLDREAVI 168
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 116/286 (40%), Gaps = 73/286 (25%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP LDE+V +DI+ ++ + L L+ S AG + AL
Sbjct: 9 IEKYRPRRLDEMVGQKDIVVRLQSYVKTGNLPHLLFTGS-------AGIGKTTAAVALAR 61
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
F + E+NASD+RGI +VR+QI +FA T + +++K++ LDEADA+T DAQ
Sbjct: 62 EFFGDSWQTNFREMNASDERGIDVVRNQIKEFARTSPLAGATFKILFLDEADALTTDAQA 121
Query: 221 ALRR-----------------------------------------------------KLP 227
ALRR L
Sbjct: 122 ALRRTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEETRRIAAAEGLT 181
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
VT AI+ ++ GDMRK +N LQ AA D ++E+T++ EI
Sbjct: 182 VTEGALDAIVYVASGDMRKAINALQGAAILRTD-IDEETIFEITATARPEEI-------- 232
Query: 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTK 333
+E +DL I DE E L G I C R L +
Sbjct: 233 DELLDL--SIGGRFDEAEQALLELTHVRGIAPNELINQCYRALVQR 276
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF + CNY SKI IQSRC +RF PLD ++ + E + VT
Sbjct: 127 METYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIEETRRIAAAEGLTVTEGA 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDEL------ 114
AI+ ++ GDMRK +N LQ AA D ++E+TIF + + RP +DEL
Sbjct: 187 LDAIVYVASGDMRKAINALQGAAILRTD-IDEETIFEITAT----ARPEEIDELLDLSIG 241
Query: 115 ------------VSHQDIISTIE-------------IPESMLVDLVLKMSDIEYRLAAGT 149
++H I+ E I ++ V L+ + + ++RL+ G
Sbjct: 242 GRFDEAEQALLELTHVRGIAPNELINQCYRALVQRDIDRTLKVKLIDALGETDFRLSEGA 301
Query: 150 SEKIQLSALIAAF 162
S IQ+ AL+A F
Sbjct: 302 SSDIQMEALLARF 314
Score = 32.3 bits (72), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 34/57 (59%)
Query: 463 KGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 519
+G+A +++ + + + +I ++ V L+ + + ++RL+ G S IQ+ AL+A F
Sbjct: 258 RGIAPNELINQCYRALVQRDIDRTLKVKLIDALGETDFRLSEGASSDIQMEALLARF 314
>sp|Q2FQT9|RFCS_METHJ Replication factor C small subunit OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=rfcS PE=3 SV=1
Length = 323
Score = 139 bits (349), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 93/139 (66%), Gaps = 1/139 (0%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
++ ++ ++ + E+PHLLF G GTGKTT +A AR+ + + + ELNASD+RGI
Sbjct: 25 EIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALAREFFGE-DWQMNFRELNASDERGI 83
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR+QI QFA T S++K++ LDEADA+T DAQ+ALRR +E + RF + CNY
Sbjct: 84 DVVRNQIKQFARTSPFGGSTFKILFLDEADALTTDAQSALRRTMETYAQTCRFILSCNYS 143
Query: 412 SKIPPAIQSRCTRFRFGPL 430
+KI IQSRC +RF PL
Sbjct: 144 AKIIDPIQSRCAIYRFRPL 162
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 106/236 (44%), Gaps = 63/236 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLK--MSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP L++++ Q+II L V K M + + AGT + AL
Sbjct: 9 IEKYRPRVLEDIIGQQEIIER-------LRSYVAKREMPHLLFTGNAGTGKTTAAVALAR 61
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
F ++ ELNASD+RGI +VR+QI QFA T S++K++ LDEADA+T DAQ+
Sbjct: 62 EFFGEDWQMNFRELNASDERGIDVVRNQIKQFARTSPFGGSTFKILFLDEADALTTDAQS 121
Query: 221 ALRRKL---------------------PVT---------PDGKKAIIDL----------- 239
ALRR + P+ P G++A+ ++
Sbjct: 122 ALRRTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSEMVKRISADQNLT 181
Query: 240 ------------SDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
+ GDMRK +N LQ AA D ++ D ++ EI +++
Sbjct: 182 VTEEVIDAIFYVAQGDMRKAINALQGAAILGRD-ISPDMIFAITATARPEEIDDLI 236
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 36/193 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF + CNY +KI IQSRC +RF PL + + + + + VT +
Sbjct: 127 METYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSEMVKRISADQNLTVTEEV 186
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDEL------ 114
AI ++ GDMRK +N LQ AA D ++ D IF + + RP +D+L
Sbjct: 187 IDAIFYVAQGDMRKAINALQGAAILGRD-ISPDMIFAITAT----ARPEEIDDLIDLSLA 241
Query: 115 ------------------VSHQDIISTI-------EIPESMLVDLVLKMSDIEYRLAAGT 149
++ Q++IS + ++PE++ V L+ + + ++RL+ G
Sbjct: 242 GNFLGAGSSLQALLHDRGIAPQELISQLYRAVVKRDLPEAVKVRLIDSLGETDFRLSEGA 301
Query: 150 SEKIQLSALIAAF 162
IQ+ +LIA F
Sbjct: 302 GSDIQMQSLIAKF 314
Score = 39.7 bits (91), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 41/64 (64%)
Query: 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+Q + ++G+A ++++++ V + ++PE++ V L+ + + ++RL+ G IQ+ +L
Sbjct: 251 LQALLHDRGIAPQELISQLYRAVVKRDLPEAVKVRLIDSLGETDFRLSEGAGSDIQMQSL 310
Query: 516 IAAF 519
IA F
Sbjct: 311 IAKF 314
>sp|Q641W4|RFC2_RAT Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2
SV=1
Length = 349
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 108/177 (61%), Gaps = 12/177 (6%)
Query: 274 PTKTEITNILRWL-------LNE---SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P+KT L W+ LNE + D ++ F E +P+++ GPPGTGKTT+I
Sbjct: 22 PSKTTGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSI 81
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADA 382
L AR L A +A VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+
Sbjct: 82 LCLARALLGPALKDA-VLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADS 140
Query: 383 MTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
MT+ AQ ALRR +E ++ RF + CN KI IQSRC R+ L + ++SRL
Sbjct: 141 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRL 197
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 120/267 (44%), Gaps = 72/267 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 34 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 86
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 87 ALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 146
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR K+
Sbjct: 147 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKV 206
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P T DG +AII + GDMR+ LN LQS + +N + V+ P + +++
Sbjct: 207 PYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFG-YINSENVFKVCDEPHPLLVKEMIQHC 265
Query: 287 LNESMDLCYKINRFIDENELPHLLFYG 313
++ ++D YKI L HL G
Sbjct: 266 VDANIDEAYKI--------LAHLWHLG 284
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + ++SRL VIE+EKV T DG
Sbjct: 153 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPYTDDG 212
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 213 LEAIIFTAQGDMRQALNNLQSTFSGFG-YINSENVFKV----CDEPHPLLVKEMIQHCVD 267
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+D+I T + E + ++ + ++ ++A G +
Sbjct: 268 ANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVN 327
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 328 SLLQMAGLLA 337
>sp|Q9WUK4|RFC2_MOUSE Replication factor C subunit 2 OS=Mus musculus GN=Rfc2 PE=2 SV=1
Length = 349
Score = 135 bits (340), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 108/177 (61%), Gaps = 12/177 (6%)
Query: 274 PTKTEITNILRWL-------LNE---SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P+KT L W+ LNE + D ++ F E +P+++ GPPGTGKTT+I
Sbjct: 22 PSKTAGHYELPWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSI 81
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADA 382
L AR L A +A VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+
Sbjct: 82 LCLARALLGPALKDA-VLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADS 140
Query: 383 MTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
MT+ AQ ALRR +E ++ RF + CN KI IQSRC R+ L + +++RL
Sbjct: 141 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRL 197
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 120/267 (44%), Gaps = 72/267 (26%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 34 VEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGP-------PGTGKTTSILCLAR 86
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 87 ALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 146
Query: 220 NALRR-----------------------------------------------------KL 226
ALRR K+
Sbjct: 147 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKV 206
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286
P T DG +AII + GDMR+ LN LQS + +N + V+ P + +++
Sbjct: 207 PYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFG-YINSENVFKVCDEPHPLLVKEMIQHC 265
Query: 287 LNESMDLCYKINRFIDENELPHLLFYG 313
++ ++D YKI L HL G
Sbjct: 266 VDANIDEAYKI--------LAHLWHLG 284
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 90/190 (47%), Gaps = 35/190 (18%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + +++RL VIE+EKV T DG
Sbjct: 153 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDG 212
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 213 LEAIIFTAQGDMRQALNNLQSTFSGFG-YINSENVFKV----CDEPHPLLVKEMIQHCVD 267
Query: 118 --------------------QDIIS-------TIEIPESMLVDLVLKMSDIEYRLAAGTS 150
+D+I T + E + ++ + ++ ++A G +
Sbjct: 268 ANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVN 327
Query: 151 EKIQLSALIA 160
+Q++ L+A
Sbjct: 328 SLLQMAGLLA 337
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,723,691
Number of Sequences: 539616
Number of extensions: 7200077
Number of successful extensions: 29456
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 326
Number of HSP's that attempted gapping in prelim test: 28092
Number of HSP's gapped (non-prelim): 1349
length of query: 533
length of database: 191,569,459
effective HSP length: 122
effective length of query: 411
effective length of database: 125,736,307
effective search space: 51677622177
effective search space used: 51677622177
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)