Query psy4285
Match_columns 533
No_of_seqs 620 out of 5557
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 21:38:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0991|consensus 100.0 1.5E-34 3.3E-39 254.6 18.5 238 287-526 29-330 (333)
2 PLN03025 replication factor C 100.0 1.3E-29 2.8E-34 250.9 26.3 239 288-528 16-318 (319)
3 KOG0989|consensus 100.0 4.9E-30 1.1E-34 236.1 18.9 236 287-523 38-345 (346)
4 KOG2035|consensus 100.0 3.6E-28 7.7E-33 220.0 23.1 240 288-529 16-349 (351)
5 KOG0991|consensus 99.9 1E-26 2.2E-31 205.3 12.1 201 101-307 16-271 (333)
6 KOG0990|consensus 99.9 9.1E-26 2E-30 209.1 16.5 239 288-526 44-354 (360)
7 PRK04132 replication factor C 99.9 3.5E-24 7.6E-29 229.6 25.0 213 309-522 567-844 (846)
8 PRK08451 DNA polymerase III su 99.9 7.1E-23 1.5E-27 210.5 26.5 234 287-522 16-335 (535)
9 PRK07003 DNA polymerase III su 99.9 1.1E-22 2.3E-27 211.8 25.3 154 287-442 18-190 (830)
10 KOG2035|consensus 99.9 1.9E-24 4.1E-29 195.9 10.4 166 1-168 151-345 (351)
11 PRK14956 DNA polymerase III su 99.9 8.9E-23 1.9E-27 205.4 23.3 154 287-442 20-192 (484)
12 PRK00440 rfc replication facto 99.9 3.8E-22 8.2E-27 198.9 27.0 234 288-522 20-316 (319)
13 PRK12323 DNA polymerase III su 99.9 1.3E-22 2.8E-27 208.7 22.3 154 287-442 18-195 (700)
14 PRK14949 DNA polymerase III su 99.9 3.3E-22 7.1E-27 212.2 24.8 233 287-522 18-357 (944)
15 KOG0733|consensus 99.9 3.7E-22 8E-27 198.8 21.3 151 307-476 546-728 (802)
16 PRK07994 DNA polymerase III su 99.9 1E-21 2.2E-26 206.0 24.4 154 287-442 18-190 (647)
17 KOG0730|consensus 99.9 1.3E-22 2.8E-27 204.9 16.8 307 140-479 220-650 (693)
18 PRK14963 DNA polymerase III su 99.9 4.2E-21 9.2E-26 198.5 26.5 219 287-508 16-328 (504)
19 PRK14952 DNA polymerase III su 99.9 4.8E-21 1E-25 200.0 25.3 153 288-442 16-189 (584)
20 COG2256 MGS1 ATPase related to 99.9 2.5E-22 5.4E-27 192.3 14.3 214 288-514 27-301 (436)
21 PRK12402 replication factor C 99.9 7.3E-21 1.6E-25 191.1 25.4 229 288-519 18-336 (337)
22 PRK14958 DNA polymerase III su 99.9 2.3E-21 5E-26 201.0 21.8 154 287-442 18-190 (509)
23 PRK05563 DNA polymerase III su 99.9 6.4E-21 1.4E-25 200.4 25.4 154 287-442 18-190 (559)
24 PRK14960 DNA polymerase III su 99.9 7.2E-21 1.6E-25 196.4 23.8 154 287-442 17-189 (702)
25 PHA02544 44 clamp loader, smal 99.9 1.7E-20 3.6E-25 186.6 24.9 228 288-524 24-314 (316)
26 PRK14965 DNA polymerase III su 99.9 7.7E-21 1.7E-25 200.8 23.7 154 287-442 18-190 (576)
27 PRK07993 DNA polymerase III su 99.9 1.1E-20 2.5E-25 185.9 22.3 152 288-441 5-178 (334)
28 COG2812 DnaX DNA polymerase II 99.9 3.6E-21 7.8E-26 195.3 18.7 153 288-442 19-190 (515)
29 PRK14961 DNA polymerase III su 99.9 2.9E-20 6.2E-25 187.0 24.8 153 288-442 19-190 (363)
30 PRK06305 DNA polymerase III su 99.9 2.2E-20 4.8E-25 191.6 24.4 237 287-526 19-353 (451)
31 PRK08691 DNA polymerase III su 99.9 2.1E-20 4.5E-25 195.0 24.2 154 287-442 18-190 (709)
32 PRK07133 DNA polymerase III su 99.9 2.1E-20 4.7E-25 196.9 24.1 154 287-442 20-189 (725)
33 PRK14964 DNA polymerase III su 99.9 2.3E-20 4.9E-25 190.4 23.4 153 288-442 16-187 (491)
34 PRK07764 DNA polymerase III su 99.9 2.5E-20 5.4E-25 201.9 24.5 154 287-442 17-191 (824)
35 PRK14951 DNA polymerase III su 99.9 2.2E-20 4.8E-25 195.6 22.3 153 288-442 19-195 (618)
36 PF13177 DNA_pol3_delta2: DNA 99.9 3E-21 6.5E-26 171.0 13.0 141 289-431 1-162 (162)
37 KOG0989|consensus 99.9 2.8E-21 6.2E-26 178.5 12.5 162 1-163 153-342 (346)
38 PRK06964 DNA polymerase III su 99.9 7.9E-20 1.7E-24 179.1 23.1 150 289-442 5-203 (342)
39 PRK05707 DNA polymerase III su 99.9 1.1E-19 2.3E-24 178.6 24.1 139 301-441 16-176 (328)
40 PRK06871 DNA polymerase III su 99.9 8.8E-20 1.9E-24 177.5 22.7 153 288-442 5-178 (325)
41 PRK07399 DNA polymerase III su 99.9 4.6E-20 1E-24 180.2 20.3 153 287-442 6-194 (314)
42 PRK08769 DNA polymerase III su 99.8 1.4E-19 3E-24 175.9 22.9 154 287-442 6-184 (319)
43 PRK08058 DNA polymerase III su 99.8 9.8E-20 2.1E-24 180.3 22.2 155 286-442 7-181 (329)
44 PRK14957 DNA polymerase III su 99.8 1.8E-19 3.9E-24 186.5 24.9 154 287-442 18-190 (546)
45 PRK07940 DNA polymerase III su 99.8 1.2E-19 2.6E-24 182.0 22.6 153 287-441 7-187 (394)
46 PRK05896 DNA polymerase III su 99.8 1.7E-19 3.6E-24 186.6 24.0 153 288-442 19-190 (605)
47 PRK14962 DNA polymerase III su 99.8 2.9E-19 6.3E-24 183.4 24.3 154 287-442 16-188 (472)
48 PRK09111 DNA polymerase III su 99.8 3E-19 6.4E-24 187.7 24.5 154 287-442 26-203 (598)
49 PRK06647 DNA polymerase III su 99.8 3.2E-19 6.9E-24 186.8 24.2 154 287-442 18-190 (563)
50 PRK06645 DNA polymerase III su 99.8 4.9E-19 1.1E-23 182.3 24.9 154 287-442 23-199 (507)
51 PRK14969 DNA polymerase III su 99.8 3.1E-19 6.7E-24 186.5 23.8 153 288-442 19-190 (527)
52 PRK14971 DNA polymerase III su 99.8 5.8E-19 1.3E-23 187.0 25.2 154 287-442 19-192 (614)
53 PRK14948 DNA polymerase III su 99.8 6.3E-19 1.4E-23 186.6 25.1 154 287-442 18-192 (620)
54 PRK04132 replication factor C 99.8 3.7E-20 8.1E-25 198.9 15.4 163 1-164 654-843 (846)
55 COG0470 HolB ATPase involved i 99.8 4E-19 8.7E-24 177.6 21.8 138 303-440 20-178 (325)
56 PRK06090 DNA polymerase III su 99.8 1.2E-18 2.6E-23 169.1 24.0 153 288-442 6-179 (319)
57 PRK14955 DNA polymerase III su 99.8 6.1E-19 1.3E-23 179.4 22.9 154 287-442 18-198 (397)
58 PRK05564 DNA polymerase III su 99.8 1.3E-18 2.8E-23 172.1 23.9 153 287-441 6-163 (313)
59 PRK14953 DNA polymerase III su 99.8 1.9E-18 4.1E-23 178.3 25.0 154 287-442 18-190 (486)
60 PRK14959 DNA polymerase III su 99.8 1.3E-18 2.9E-23 180.9 23.7 153 288-442 19-190 (624)
61 PRK05917 DNA polymerase III su 99.8 3.5E-18 7.6E-23 162.4 24.6 224 293-524 5-278 (290)
62 PRK14954 DNA polymerase III su 99.8 2.2E-18 4.7E-23 181.4 24.6 154 287-442 18-198 (620)
63 COG1222 RPT1 ATP-dependent 26S 99.8 3.9E-19 8.4E-24 167.8 15.0 189 263-477 145-368 (406)
64 PLN03025 replication factor C 99.8 2.7E-19 5.9E-24 177.2 14.3 164 1-165 123-312 (319)
65 TIGR02397 dnaX_nterm DNA polym 99.8 6.4E-18 1.4E-22 171.0 23.9 154 287-442 16-188 (355)
66 PRK09112 DNA polymerase III su 99.8 4.7E-18 1E-22 168.3 22.2 154 287-442 25-212 (351)
67 PRK14950 DNA polymerase III su 99.8 7.6E-18 1.7E-22 179.1 24.9 154 287-442 18-191 (585)
68 TIGR01243 CDC48 AAA family ATP 99.8 3.2E-18 6.8E-23 187.7 22.3 149 308-477 489-668 (733)
69 PF05496 RuvB_N: Holliday junc 99.8 7.7E-19 1.7E-23 158.2 14.3 141 288-442 27-191 (233)
70 COG1223 Predicted ATPase (AAA+ 99.8 2.1E-19 4.5E-24 161.8 9.9 151 306-477 151-330 (368)
71 PRK07471 DNA polymerase III su 99.8 3.2E-18 6.8E-23 170.5 18.9 154 287-442 21-212 (365)
72 KOG2028|consensus 99.8 3.9E-19 8.4E-24 167.2 11.3 210 296-514 152-431 (554)
73 PRK08699 DNA polymerase III su 99.8 3.7E-17 7.9E-22 160.5 22.3 150 289-442 5-184 (325)
74 KOG0990|consensus 99.8 6.9E-19 1.5E-23 163.6 8.8 185 99-289 28-275 (360)
75 PRK14970 DNA polymerase III su 99.8 9.9E-17 2.2E-21 162.5 25.3 153 288-442 20-179 (367)
76 TIGR00678 holB DNA polymerase 99.8 6.7E-18 1.4E-22 154.5 13.5 145 296-442 3-167 (188)
77 TIGR02639 ClpA ATP-dependent C 99.8 1.4E-16 3E-21 174.2 25.1 291 139-442 204-661 (731)
78 PRK07276 DNA polymerase III su 99.7 1.3E-16 2.8E-21 152.5 20.5 150 288-442 5-174 (290)
79 PRK04195 replication factor C 99.7 9.9E-17 2.2E-21 167.5 21.4 146 289-442 18-172 (482)
80 KOG0735|consensus 99.7 1.1E-16 2.4E-21 162.6 20.7 148 308-476 703-880 (952)
81 KOG0736|consensus 99.7 3.1E-16 6.8E-21 160.8 22.6 113 308-432 707-844 (953)
82 TIGR03345 VI_ClpV1 type VI sec 99.7 2.3E-16 5E-21 173.4 20.4 154 281-442 562-779 (852)
83 COG2255 RuvB Holliday junction 99.7 1.9E-16 4.1E-21 145.2 16.1 141 288-442 29-193 (332)
84 CHL00095 clpC Clp protease ATP 99.7 4.9E-16 1.1E-20 171.8 20.5 153 282-442 506-731 (821)
85 PRK07003 DNA polymerase III su 99.7 4.3E-17 9.3E-22 170.3 11.0 102 1-102 143-244 (830)
86 PRK07132 DNA polymerase III su 99.7 4.5E-15 9.7E-20 143.4 23.8 149 293-442 4-161 (299)
87 PRK14956 DNA polymerase III su 99.7 6.7E-17 1.4E-21 163.1 11.6 101 1-101 145-245 (484)
88 PRK11034 clpA ATP-dependent Cl 99.7 9.2E-16 2E-20 165.5 20.7 209 226-442 371-665 (758)
89 KOG0733|consensus 99.7 1.8E-16 3.8E-21 158.7 13.4 147 308-475 225-405 (802)
90 PRK13342 recombination factor 99.7 2.8E-15 6.1E-20 153.7 22.4 144 288-442 15-163 (413)
91 PRK08451 DNA polymerase III su 99.7 2.2E-16 4.8E-21 162.7 13.8 163 1-163 141-333 (535)
92 PRK05818 DNA polymerase III su 99.7 9.5E-16 2.1E-20 142.5 16.5 125 305-430 5-147 (261)
93 COG2812 DnaX DNA polymerase II 99.7 1.2E-16 2.6E-21 162.5 11.4 108 1-108 143-250 (515)
94 PRK13341 recombination factor 99.7 5.4E-16 1.2E-20 166.4 16.3 145 288-442 31-180 (725)
95 CHL00195 ycf46 Ycf46; Provisio 99.7 2.7E-15 5.9E-20 154.3 19.9 151 308-479 261-442 (489)
96 KOG0738|consensus 99.7 2.8E-16 6E-21 149.5 10.9 149 308-477 247-428 (491)
97 PRK12323 DNA polymerase III su 99.7 1.8E-16 4E-21 163.7 10.3 102 1-102 148-249 (700)
98 KOG0734|consensus 99.7 5E-16 1.1E-20 153.1 11.3 179 308-508 339-547 (752)
99 KOG0727|consensus 99.6 4.7E-15 1E-19 133.3 14.2 164 262-442 148-338 (408)
100 TIGR00635 ruvB Holliday juncti 99.6 4.8E-15 1E-19 146.6 14.6 141 288-442 7-171 (305)
101 PRK07994 DNA polymerase III su 99.6 2.1E-15 4.5E-20 158.7 12.3 101 1-101 143-243 (647)
102 PRK00080 ruvB Holliday junctio 99.6 2.1E-14 4.5E-19 143.0 18.7 141 288-442 28-192 (328)
103 KOG0739|consensus 99.6 1.3E-15 2.8E-20 140.0 8.8 144 308-472 168-341 (439)
104 TIGR02881 spore_V_K stage V sp 99.6 1.2E-14 2.5E-19 140.0 15.9 133 305-442 41-190 (261)
105 TIGR03346 chaperone_ClpB ATP-d 99.6 9.9E-14 2.1E-18 154.0 24.4 153 285-442 565-775 (852)
106 PRK14700 recombination factor 99.6 4.1E-15 8.8E-20 139.9 11.3 114 5-118 6-133 (300)
107 PRK03992 proteasome-activating 99.6 1.2E-14 2.5E-19 147.4 15.3 150 307-477 166-348 (389)
108 PLN00020 ribulose bisphosphate 99.6 6.2E-15 1.3E-19 142.0 12.1 126 309-442 151-310 (413)
109 COG0542 clpA ATP-binding subun 99.6 5.4E-14 1.2E-18 148.6 20.2 157 283-442 489-704 (786)
110 PRK14957 DNA polymerase III su 99.6 5.2E-15 1.1E-19 153.5 12.3 111 1-115 143-253 (546)
111 PRK14949 DNA polymerase III su 99.6 4.7E-15 1E-19 158.2 12.0 100 1-100 143-242 (944)
112 PRK14958 DNA polymerase III su 99.6 4E-15 8.6E-20 154.7 10.3 105 1-105 143-247 (509)
113 CHL00181 cbbX CbbX; Provisiona 99.6 3.4E-14 7.4E-19 137.5 15.6 132 306-442 59-208 (287)
114 PTZ00454 26S protease regulato 99.6 2.7E-14 5.8E-19 143.9 15.4 151 307-478 180-363 (398)
115 PRK14952 DNA polymerase III su 99.6 8.3E-15 1.8E-19 153.4 11.6 102 1-102 142-244 (584)
116 PRK14951 DNA polymerase III su 99.6 1.2E-14 2.6E-19 152.7 12.1 112 1-112 148-259 (618)
117 TIGR02640 gas_vesic_GvpN gas v 99.6 4.9E-14 1.1E-18 135.3 15.4 156 294-457 11-216 (262)
118 KOG0728|consensus 99.6 2.2E-14 4.8E-19 128.9 11.9 162 264-442 142-330 (404)
119 TIGR01241 FtsH_fam ATP-depende 99.6 2.8E-14 6.2E-19 149.7 14.9 150 307-477 89-271 (495)
120 PRK14960 DNA polymerase III su 99.6 9.7E-15 2.1E-19 151.4 10.9 102 1-102 142-243 (702)
121 TIGR02880 cbbX_cfxQ probable R 99.6 9.5E-14 2.1E-18 134.6 17.1 126 308-442 60-207 (284)
122 PRK14964 DNA polymerase III su 99.6 1.2E-14 2.6E-19 148.7 10.9 103 1-103 140-242 (491)
123 PF00004 AAA: ATPase family as 99.6 2E-14 4.3E-19 123.5 10.5 106 309-425 1-127 (132)
124 PRK10865 protein disaggregatio 99.6 3.5E-13 7.6E-18 149.0 22.9 152 286-442 569-778 (857)
125 PRK08691 DNA polymerase III su 99.5 1.4E-14 3E-19 151.7 9.9 103 1-103 143-245 (709)
126 KOG0652|consensus 99.5 1.5E-13 3.3E-18 124.2 15.1 121 308-440 207-352 (424)
127 PRK14965 DNA polymerase III su 99.5 1.5E-14 3.3E-19 153.1 9.9 102 1-102 143-244 (576)
128 KOG0729|consensus 99.5 1.2E-13 2.6E-18 125.2 14.1 120 308-439 213-357 (435)
129 COG0464 SpoVK ATPases of the A 99.5 1.4E-13 3.1E-18 144.9 17.1 159 308-480 278-461 (494)
130 TIGR03689 pup_AAA proteasome A 99.5 2.5E-13 5.5E-18 139.5 18.2 134 307-442 217-377 (512)
131 PRK06581 DNA polymerase III su 99.5 1.8E-12 3.8E-17 117.8 21.1 145 296-442 4-160 (263)
132 PRK14971 DNA polymerase III su 99.5 1.1E-13 2.3E-18 147.1 14.7 98 1-98 145-242 (614)
133 PTZ00361 26 proteosome regulat 99.5 7.6E-14 1.7E-18 141.5 12.6 148 308-476 219-399 (438)
134 PRK14969 DNA polymerase III su 99.5 3.3E-14 7.2E-19 148.8 10.2 102 1-102 143-244 (527)
135 PRK14961 DNA polymerase III su 99.5 6.2E-14 1.3E-18 141.2 11.7 102 1-102 143-244 (363)
136 TIGR00763 lon ATP-dependent pr 99.5 1.3E-13 2.8E-18 151.8 14.8 148 282-442 317-504 (775)
137 PRK06305 DNA polymerase III su 99.5 1.6E-13 3.4E-18 141.2 14.4 165 1-165 145-349 (451)
138 COG0466 Lon ATP-dependent Lon 99.5 9.1E-14 2E-18 142.8 12.3 126 307-442 351-507 (782)
139 PRK05563 DNA polymerase III su 99.5 7.3E-14 1.6E-18 147.3 12.0 103 1-103 143-245 (559)
140 CHL00176 ftsH cell division pr 99.5 5E-13 1.1E-17 142.0 18.0 157 307-478 217-400 (638)
141 KOG0731|consensus 99.5 1.9E-13 4.1E-18 143.4 14.5 154 309-477 347-529 (774)
142 TIGR02902 spore_lonB ATP-depen 99.5 5.2E-13 1.1E-17 140.4 17.0 155 288-442 68-275 (531)
143 PRK07133 DNA polymerase III su 99.5 1.3E-13 2.7E-18 146.1 11.7 101 1-101 142-242 (725)
144 PRK07764 DNA polymerase III su 99.5 1.2E-13 2.6E-18 150.3 11.8 102 1-102 144-246 (824)
145 CHL00206 ycf2 Ycf2; Provisiona 99.5 2.4E-13 5.3E-18 152.7 14.0 150 308-478 1632-1854(2281)
146 PRK08084 DNA replication initi 99.5 2.1E-13 4.6E-18 128.7 11.7 141 289-442 28-179 (235)
147 TIGR01242 26Sp45 26S proteasom 99.5 2.3E-13 4.9E-18 137.5 12.5 149 307-476 157-338 (364)
148 PRK06645 DNA polymerase III su 99.5 1.6E-13 3.4E-18 141.8 11.2 104 1-104 152-258 (507)
149 PRK09111 DNA polymerase III su 99.5 1.7E-13 3.6E-18 144.6 11.5 102 1-102 156-257 (598)
150 PRK05896 DNA polymerase III su 99.5 1.2E-13 2.6E-18 143.4 10.0 100 1-100 143-242 (605)
151 PRK00440 rfc replication facto 99.5 7.5E-13 1.6E-17 131.9 15.1 164 1-165 126-316 (319)
152 COG2256 MGS1 ATPase related to 99.5 3.1E-13 6.6E-18 130.4 11.5 113 6-118 131-256 (436)
153 PRK14963 DNA polymerase III su 99.5 3E-13 6.4E-18 140.4 12.0 102 1-103 140-241 (504)
154 KOG0726|consensus 99.5 5.8E-13 1.3E-17 122.4 12.3 122 308-442 221-367 (440)
155 PRK14959 DNA polymerase III su 99.5 2.8E-13 6.1E-18 141.5 10.8 100 1-100 143-242 (624)
156 KOG0737|consensus 99.5 4.7E-13 1E-17 127.7 11.4 159 308-477 129-307 (386)
157 PRK06893 DNA replication initi 99.4 6.5E-13 1.4E-17 125.0 12.1 124 306-442 39-173 (229)
158 PTZ00112 origin recognition co 99.4 2.3E-12 5.1E-17 135.8 17.1 149 294-442 768-948 (1164)
159 KOG0744|consensus 99.4 1.3E-12 2.9E-17 121.9 13.4 130 309-442 180-339 (423)
160 PRK14962 DNA polymerase III su 99.4 4.7E-13 1E-17 137.8 11.6 102 1-102 141-242 (472)
161 PRK06647 DNA polymerase III su 99.4 5.2E-13 1.1E-17 140.3 11.8 101 1-101 143-243 (563)
162 KOG0742|consensus 99.4 1.5E-12 3.3E-17 124.9 13.3 160 307-477 385-588 (630)
163 KOG0743|consensus 99.4 3.9E-12 8.5E-17 124.9 16.5 149 309-475 238-414 (457)
164 KOG1969|consensus 99.4 2.5E-12 5.4E-17 132.0 15.5 128 309-442 329-480 (877)
165 PRK12402 replication factor C 99.4 2.3E-12 4.9E-17 129.5 14.3 161 1-162 149-336 (337)
166 PRK14954 DNA polymerase III su 99.4 9.6E-13 2.1E-17 139.0 11.7 100 1-100 151-255 (620)
167 PRK13531 regulatory ATPase Rav 99.4 6.7E-12 1.5E-16 126.7 17.2 206 280-498 15-239 (498)
168 PRK08485 DNA polymerase III su 99.4 2.3E-13 5E-18 120.2 5.8 83 1-84 78-173 (206)
169 TIGR03420 DnaA_homol_Hda DnaA 99.4 1.6E-12 3.4E-17 122.8 12.0 141 289-442 21-171 (226)
170 PRK08727 hypothetical protein; 99.4 4.7E-12 1E-16 119.4 14.5 122 308-442 43-174 (233)
171 KOG2004|consensus 99.4 1.5E-12 3.2E-17 133.3 11.6 140 290-442 416-595 (906)
172 PRK10787 DNA-binding ATP-depen 99.4 1.1E-12 2.3E-17 143.1 11.4 126 306-442 349-505 (784)
173 PRK14953 DNA polymerase III su 99.4 1.3E-12 2.9E-17 135.2 11.4 102 1-102 143-244 (486)
174 cd00009 AAA The AAA+ (ATPases 99.4 2.8E-12 6.1E-17 112.0 11.9 133 293-428 6-150 (151)
175 TIGR02928 orc1/cdc6 family rep 99.4 1.4E-11 3E-16 125.3 18.5 143 299-442 33-211 (365)
176 TIGR02974 phageshock_pspF psp 99.4 6.8E-12 1.5E-16 124.1 15.0 168 308-488 24-220 (329)
177 PRK14948 DNA polymerase III su 99.4 1.9E-12 4.1E-17 137.6 11.5 100 1-101 145-244 (620)
178 PRK10733 hflB ATP-dependent me 99.4 3.7E-12 8E-17 137.1 13.9 152 307-479 186-370 (644)
179 PHA02244 ATPase-like protein 99.4 1.3E-11 2.9E-16 120.3 16.0 122 297-432 112-263 (383)
180 COG0465 HflB ATP-dependent Zn 99.4 1.6E-12 3.5E-17 134.1 10.2 149 308-477 185-366 (596)
181 PRK07993 DNA polymerase III su 99.4 9E-13 1.9E-17 130.1 7.7 76 1-81 132-207 (334)
182 PRK08903 DnaA regulatory inact 99.4 6.6E-12 1.4E-16 118.5 13.0 136 289-441 24-168 (227)
183 COG2204 AtoC Response regulato 99.4 1.2E-11 2.5E-16 124.6 15.2 182 308-507 166-375 (464)
184 PRK00411 cdc6 cell division co 99.4 6E-11 1.3E-15 121.8 20.5 144 297-442 46-219 (394)
185 PRK05342 clpX ATP-dependent pr 99.4 6.3E-12 1.4E-16 127.1 12.8 119 273-397 59-213 (412)
186 KOG1969|consensus 99.3 5.9E-12 1.3E-16 129.3 12.1 154 101-259 260-519 (877)
187 COG1474 CDC6 Cdc6-related prot 99.3 6.3E-12 1.4E-16 125.3 11.5 150 292-442 28-202 (366)
188 TIGR02639 ClpA ATP-dependent C 99.3 4.8E-12 1E-16 138.8 11.5 151 288-442 185-357 (731)
189 PRK06526 transposase; Provisio 99.3 7.8E-13 1.7E-17 125.5 4.2 160 240-412 31-202 (254)
190 TIGR01243 CDC48 AAA family ATP 99.3 1.6E-11 3.4E-16 135.1 15.0 147 308-475 214-390 (733)
191 KOG0651|consensus 99.3 1.4E-11 3E-16 114.6 12.1 123 308-442 168-314 (388)
192 PRK08181 transposase; Validate 99.3 1.6E-12 3.5E-17 123.9 5.9 160 240-412 38-210 (269)
193 KOG0740|consensus 99.3 7.7E-12 1.7E-16 123.9 10.8 152 308-480 188-370 (428)
194 PRK07399 DNA polymerase III su 99.3 4.3E-12 9.3E-17 124.3 8.4 78 1-82 148-225 (314)
195 TIGR01650 PD_CobS cobaltochela 99.3 3E-11 6.5E-16 116.7 14.0 128 308-442 66-232 (327)
196 PRK14955 DNA polymerase III su 99.3 6.6E-12 1.4E-16 128.0 9.6 102 1-102 151-257 (397)
197 TIGR03345 VI_ClpV1 type VI sec 99.3 5.7E-11 1.2E-15 131.2 17.5 148 288-442 190-362 (852)
198 PRK05642 DNA replication initi 99.3 2.8E-11 6E-16 114.2 13.0 122 307-441 46-177 (234)
199 PF07728 AAA_5: AAA domain (dy 99.3 3.4E-12 7.4E-17 110.7 6.3 109 308-422 1-139 (139)
200 PRK11331 5-methylcytosine-spec 99.3 3.7E-11 8.1E-16 120.4 14.3 148 293-442 183-371 (459)
201 TIGR02903 spore_lon_C ATP-depe 99.3 2.9E-11 6.3E-16 129.2 14.0 154 289-442 158-365 (615)
202 TIGR02397 dnaX_nterm DNA polym 99.3 1.2E-11 2.6E-16 125.1 10.6 102 1-102 141-242 (355)
203 TIGR00382 clpX endopeptidase C 99.3 2.3E-11 5E-16 122.2 12.2 131 273-410 65-247 (413)
204 PRK14970 DNA polymerase III su 99.3 2.2E-11 4.7E-16 123.6 11.9 100 1-100 132-231 (367)
205 KOG0730|consensus 99.3 4.6E-11 1E-15 122.0 13.8 151 307-477 219-397 (693)
206 PRK09112 DNA polymerase III su 99.3 8.5E-12 1.8E-16 123.9 8.4 80 1-82 165-244 (351)
207 COG1221 PspF Transcriptional r 99.3 2.9E-11 6.3E-16 119.6 12.0 179 308-498 103-305 (403)
208 PF07726 AAA_3: ATPase family 99.3 4.8E-12 1E-16 104.0 5.4 108 308-423 1-130 (131)
209 PRK06090 DNA polymerase III su 99.3 8.3E-12 1.8E-16 121.6 7.9 72 1-80 132-203 (319)
210 PRK08769 DNA polymerase III su 99.3 8.6E-12 1.9E-16 121.6 7.9 75 1-81 137-211 (319)
211 PRK13407 bchI magnesium chelat 99.3 7.1E-11 1.5E-15 116.0 14.4 156 287-442 10-215 (334)
212 KOG0741|consensus 99.3 6.1E-12 1.3E-16 124.5 6.8 149 309-471 259-445 (744)
213 COG0714 MoxR-like ATPases [Gen 99.3 7.7E-10 1.7E-14 110.3 21.9 145 290-442 29-202 (329)
214 PRK06871 DNA polymerase III su 99.3 9.8E-12 2.1E-16 121.4 8.1 76 1-81 131-206 (325)
215 PF07724 AAA_2: AAA domain (Cd 99.3 9.5E-12 2.1E-16 110.8 7.3 101 307-412 4-131 (171)
216 PRK11608 pspF phage shock prot 99.3 1.1E-10 2.4E-15 115.6 15.4 168 308-488 31-227 (326)
217 PRK14950 DNA polymerase III su 99.3 2.4E-11 5.1E-16 129.7 11.3 101 1-101 144-244 (585)
218 PF00308 Bac_DnaA: Bacterial d 99.2 5.9E-11 1.3E-15 110.6 12.0 130 308-442 36-178 (219)
219 PRK09183 transposase/IS protei 99.2 7.5E-12 1.6E-16 119.6 5.8 165 240-412 35-207 (259)
220 COG3829 RocR Transcriptional r 99.2 1.1E-10 2.4E-15 117.3 14.2 168 308-488 270-466 (560)
221 PRK10865 protein disaggregatio 99.2 1.2E-10 2.5E-15 129.1 15.3 148 288-442 181-353 (857)
222 PHA02544 44 clamp loader, smal 99.2 1.6E-10 3.5E-15 114.9 14.7 162 1-164 125-311 (316)
223 TIGR01817 nifA Nif-specific re 99.2 1.8E-10 3.8E-15 122.6 15.4 167 308-488 221-415 (534)
224 PRK05707 DNA polymerase III su 99.2 2.3E-11 5E-16 119.8 8.0 76 1-80 130-205 (328)
225 CHL00081 chlI Mg-protoporyphyr 99.2 4.4E-10 9.6E-15 110.6 16.8 155 287-442 19-231 (350)
226 PRK15424 propionate catabolism 99.2 3.7E-10 8.1E-15 117.7 17.0 181 308-497 244-460 (538)
227 PRK11034 clpA ATP-dependent Cl 99.2 5E-11 1.1E-15 129.1 10.9 145 290-442 191-361 (758)
228 PRK05022 anaerobic nitric oxid 99.2 3.3E-10 7.1E-15 119.4 16.2 168 308-488 212-407 (509)
229 TIGR02329 propionate_PrpR prop 99.2 6.5E-10 1.4E-14 116.1 18.0 171 307-488 236-437 (526)
230 PRK12422 chromosomal replicati 99.2 1E-10 2.2E-15 120.0 11.8 128 308-442 143-283 (445)
231 PRK14088 dnaA chromosomal repl 99.2 6.3E-11 1.4E-15 121.9 10.0 132 307-442 131-275 (440)
232 PRK14086 dnaA chromosomal repl 99.2 7.9E-11 1.7E-15 122.7 10.7 129 309-442 317-458 (617)
233 PRK10820 DNA-binding transcrip 99.2 3.6E-10 7.7E-15 119.1 15.9 168 308-488 229-424 (520)
234 TIGR02030 BchI-ChlI magnesium 99.2 8.7E-10 1.9E-14 108.6 17.5 155 288-442 7-218 (337)
235 PRK00149 dnaA chromosomal repl 99.2 1.2E-10 2.6E-15 121.1 11.7 130 308-442 150-292 (450)
236 PRK15429 formate hydrogenlyase 99.2 3.3E-10 7.1E-15 124.0 15.5 168 308-488 401-596 (686)
237 COG0593 DnaA ATPase involved i 99.2 1.4E-10 3E-15 115.2 10.9 130 307-442 114-256 (408)
238 PF05673 DUF815: Protein of un 99.2 3.9E-10 8.4E-15 103.6 12.7 141 291-442 37-206 (249)
239 PRK11388 DNA-binding transcrip 99.2 5E-10 1.1E-14 121.8 15.8 175 308-496 350-548 (638)
240 TIGR03346 chaperone_ClpB ATP-d 99.2 1.6E-10 3.5E-15 128.6 12.1 148 288-442 176-348 (852)
241 PRK14087 dnaA chromosomal repl 99.2 3.5E-10 7.6E-15 116.5 13.5 130 308-442 143-287 (450)
242 PRK05818 DNA polymerase III su 99.1 1.1E-10 2.4E-15 108.9 8.5 73 1-82 112-194 (261)
243 PRK06620 hypothetical protein; 99.1 6.1E-10 1.3E-14 103.3 13.3 108 307-442 45-159 (214)
244 TIGR00362 DnaA chromosomal rep 99.1 1.6E-10 3.5E-15 118.6 10.5 129 308-442 138-280 (405)
245 COG3604 FhlA Transcriptional r 99.1 5.5E-10 1.2E-14 110.9 13.2 177 308-497 248-451 (550)
246 CHL00095 clpC Clp protease ATP 99.1 1.1E-09 2.3E-14 121.8 17.2 146 289-442 183-353 (821)
247 PRK09087 hypothetical protein; 99.1 4.7E-10 1E-14 104.9 11.9 126 293-442 32-165 (226)
248 PRK07940 DNA polymerase III su 99.1 9.5E-11 2E-15 118.1 7.7 76 1-81 141-216 (394)
249 PF00158 Sigma54_activat: Sigm 99.1 8.5E-11 1.8E-15 104.4 6.5 117 307-426 23-166 (168)
250 PRK06964 DNA polymerase III su 99.1 1.1E-10 2.3E-15 115.0 7.7 72 1-80 156-227 (342)
251 PRK05564 DNA polymerase III su 99.1 1.6E-10 3.4E-15 114.4 8.5 76 1-80 117-192 (313)
252 TIGR00390 hslU ATP-dependent p 99.1 1.2E-09 2.7E-14 108.2 13.9 72 371-442 247-345 (441)
253 TIGR01448 recD_rel helicase, p 99.1 2.1E-09 4.6E-14 117.0 17.1 99 308-411 340-453 (720)
254 PRK05201 hslU ATP-dependent pr 99.1 1.2E-09 2.5E-14 108.4 13.6 72 371-442 249-347 (443)
255 COG1219 ClpX ATP-dependent pro 99.1 1E-08 2.2E-13 96.1 18.9 125 267-397 43-202 (408)
256 PRK07276 DNA polymerase III su 99.1 2.1E-10 4.5E-15 110.0 7.9 72 1-80 128-199 (290)
257 PRK08058 DNA polymerase III su 99.1 2.2E-10 4.8E-15 113.7 8.0 74 1-81 134-207 (329)
258 PRK07132 DNA polymerase III su 99.1 3.1E-10 6.7E-15 109.9 8.3 73 1-80 114-186 (299)
259 PF06068 TIP49: TIP49 C-termin 99.1 6E-10 1.3E-14 107.6 10.0 70 372-442 279-360 (398)
260 PF01695 IstB_IS21: IstB-like 99.1 8.4E-11 1.8E-15 105.7 3.8 100 299-411 42-150 (178)
261 PRK07471 DNA polymerase III su 99.0 3.9E-10 8.4E-15 112.7 8.1 77 1-81 165-241 (365)
262 COG1224 TIP49 DNA helicase TIP 99.0 2.3E-09 5.1E-14 101.8 12.7 70 372-442 292-373 (450)
263 TIGR02915 PEP_resp_reg putativ 99.0 4E-09 8.6E-14 110.2 15.3 168 308-488 164-359 (445)
264 PRK12377 putative replication 99.0 3.4E-10 7.4E-15 106.6 6.5 107 307-422 102-222 (248)
265 TIGR00678 holB DNA polymerase 99.0 3.5E-10 7.6E-15 103.4 6.4 69 1-75 120-188 (188)
266 KOG0741|consensus 99.0 1.1E-08 2.5E-13 101.7 17.3 123 308-442 540-685 (744)
267 PRK10923 glnG nitrogen regulat 99.0 3.2E-09 6.8E-14 111.7 14.5 168 308-488 163-358 (469)
268 COG0470 HolB ATPase involved i 99.0 1.3E-10 2.7E-15 116.2 3.7 74 1-85 133-206 (325)
269 TIGR02442 Cob-chelat-sub cobal 99.0 2E-08 4.4E-13 108.2 20.4 155 287-441 6-212 (633)
270 KOG0732|consensus 99.0 5.3E-09 1.1E-13 113.4 14.4 151 308-470 301-478 (1080)
271 KOG0735|consensus 99.0 9E-09 2E-13 105.9 14.7 168 305-478 430-621 (952)
272 smart00350 MCM minichromosome 99.0 1.9E-09 4.1E-14 113.3 9.3 131 307-442 237-399 (509)
273 PRK11361 acetoacetate metaboli 99.0 1.2E-08 2.7E-13 106.9 15.4 168 308-488 168-363 (457)
274 PF01078 Mg_chelatase: Magnesi 99.0 5.5E-10 1.2E-14 100.6 4.3 119 288-410 6-158 (206)
275 TIGR02031 BchD-ChlD magnesium 99.0 4E-08 8.7E-13 104.7 19.2 134 305-442 15-173 (589)
276 PRK06921 hypothetical protein; 99.0 1.6E-09 3.4E-14 103.9 7.7 111 307-422 118-240 (266)
277 TIGR00602 rad24 checkpoint pro 98.9 4.1E-09 8.9E-14 111.6 11.3 154 288-442 87-286 (637)
278 PRK08116 hypothetical protein; 98.9 1.7E-09 3.7E-14 103.9 7.7 115 308-431 116-250 (268)
279 PRK05917 DNA polymerase III su 98.9 1.3E-09 2.8E-14 104.2 6.8 58 1-73 119-176 (290)
280 PRK04195 replication factor C 98.9 5.5E-09 1.2E-13 109.5 12.3 93 6-99 129-222 (482)
281 PRK13342 recombination factor 98.9 7.1E-09 1.5E-13 106.6 12.3 110 6-116 119-235 (413)
282 KOG2028|consensus 98.9 5E-09 1.1E-13 99.7 9.8 112 6-117 249-385 (554)
283 PRK08485 DNA polymerase III su 98.9 3.4E-08 7.4E-13 87.6 14.3 92 345-441 33-137 (206)
284 PRK15115 response regulator Gl 98.9 1.9E-08 4.2E-13 105.0 14.6 169 307-488 158-354 (444)
285 COG1484 DnaC DNA replication p 98.9 9.1E-10 2E-14 104.7 4.2 98 306-412 105-210 (254)
286 KOG1051|consensus 98.9 7.5E-08 1.6E-12 104.0 19.0 119 283-410 560-710 (898)
287 KOG1942|consensus 98.9 1.5E-08 3.3E-13 93.7 11.7 71 371-442 296-379 (456)
288 PRK07952 DNA replication prote 98.9 2.9E-09 6.3E-14 100.1 7.1 113 307-430 100-234 (244)
289 KOG1514|consensus 98.9 9.1E-08 2E-12 98.9 18.4 150 292-442 407-588 (767)
290 PF13173 AAA_14: AAA domain 98.9 1.5E-08 3.2E-13 86.3 10.4 119 308-435 4-127 (128)
291 PRK06835 DNA replication prote 98.9 3.9E-09 8.4E-14 103.8 7.6 118 307-430 184-317 (329)
292 TIGR01818 ntrC nitrogen regula 98.9 2.6E-08 5.6E-13 104.7 14.3 168 308-488 159-354 (463)
293 COG2607 Predicted ATPase (AAA+ 98.9 3.1E-08 6.6E-13 89.5 12.4 141 291-442 70-238 (287)
294 smart00382 AAA ATPases associa 98.9 3.1E-08 6.7E-13 85.5 12.0 107 307-422 3-138 (148)
295 PF14532 Sigma54_activ_2: Sigm 98.9 4.6E-09 9.9E-14 90.7 6.4 101 308-425 23-131 (138)
296 PRK06581 DNA polymerase III su 98.9 7.9E-09 1.7E-13 94.2 8.1 81 1-84 113-193 (263)
297 PRK13341 recombination factor 98.8 1.3E-08 2.7E-13 110.1 10.2 111 6-116 136-263 (725)
298 COG3283 TyrR Transcriptional r 98.8 2.4E-08 5.2E-13 95.0 10.7 170 308-489 229-420 (511)
299 KOG2227|consensus 98.8 6.9E-08 1.5E-12 95.4 14.1 228 298-527 167-466 (529)
300 TIGR00764 lon_rel lon-related 98.8 7.5E-08 1.6E-12 102.8 15.5 54 370-423 216-292 (608)
301 TIGR03015 pepcterm_ATPase puta 98.8 1.3E-07 2.7E-12 91.8 15.3 131 308-442 45-204 (269)
302 COG1239 ChlI Mg-chelatase subu 98.8 3E-07 6.5E-12 90.5 17.6 157 286-442 18-231 (423)
303 TIGR00368 Mg chelatase-related 98.8 3.3E-08 7.2E-13 102.6 10.3 147 287-437 194-398 (499)
304 COG0542 clpA ATP-binding subun 98.7 1.5E-07 3.2E-12 100.4 14.1 147 288-442 173-345 (786)
305 PF12774 AAA_6: Hydrolytic ATP 98.7 2.5E-07 5.3E-12 86.5 13.5 121 309-442 35-179 (231)
306 PTZ00111 DNA replication licen 98.7 3.3E-08 7.2E-13 106.9 8.4 129 307-438 493-652 (915)
307 COG1220 HslU ATP-dependent pro 98.7 2.4E-07 5.3E-12 87.7 12.8 72 371-442 250-348 (444)
308 PRK10365 transcriptional regul 98.7 2.8E-07 6E-12 96.3 14.5 175 308-496 164-366 (441)
309 PF05621 TniB: Bacterial TniB 98.7 7.5E-07 1.6E-11 84.9 15.2 156 270-436 36-219 (302)
310 PRK13765 ATP-dependent proteas 98.6 4.7E-07 1E-11 96.4 15.1 46 286-333 32-77 (637)
311 KOG0745|consensus 98.6 9.8E-08 2.1E-12 93.1 8.9 85 307-397 227-331 (564)
312 PRK08084 DNA replication initi 98.6 2.5E-07 5.5E-12 87.4 11.1 94 6-99 130-233 (235)
313 PRK08939 primosomal protein Dn 98.6 1.2E-07 2.7E-12 92.5 9.2 95 307-412 157-262 (306)
314 PRK09862 putative ATP-dependen 98.6 1.2E-07 2.6E-12 98.0 9.1 144 289-436 195-394 (506)
315 KOG2680|consensus 98.6 1.8E-06 4E-11 80.5 15.4 70 372-442 289-370 (454)
316 PF08542 Rep_fac_C: Replicatio 98.6 8.1E-07 1.8E-11 70.2 11.2 86 430-519 3-89 (89)
317 PRK10875 recD exonuclease V su 98.6 1.6E-07 3.5E-12 99.8 9.2 100 308-410 169-301 (615)
318 PF13401 AAA_22: AAA domain; P 98.6 1.3E-07 2.8E-12 80.8 7.0 101 308-410 6-125 (131)
319 smart00763 AAA_PrkA PrkA AAA d 98.6 7.5E-07 1.6E-11 87.5 12.7 62 370-431 235-314 (361)
320 PF12775 AAA_7: P-loop contain 98.6 4.2E-07 9.2E-12 87.4 10.9 138 300-442 29-192 (272)
321 KOG2170|consensus 98.5 2.7E-07 5.8E-12 86.3 8.6 134 279-413 76-227 (344)
322 KOG0736|consensus 98.5 5.1E-07 1.1E-11 94.2 11.2 127 307-442 432-575 (953)
323 PF05729 NACHT: NACHT domain 98.5 8.4E-07 1.8E-11 79.0 11.0 131 309-441 3-161 (166)
324 PRK08727 hypothetical protein; 98.5 7.2E-07 1.6E-11 84.2 10.9 94 7-100 126-229 (233)
325 PF01637 Arch_ATPase: Archaeal 98.5 1.9E-07 4.1E-12 88.3 6.7 145 290-442 4-203 (234)
326 KOG0480|consensus 98.5 1.9E-06 4.2E-11 88.1 13.7 125 307-438 379-537 (764)
327 PF13604 AAA_30: AAA domain; P 98.5 3.2E-07 6.9E-12 84.1 7.5 99 308-412 20-132 (196)
328 TIGR02902 spore_lonB ATP-depen 98.5 6E-07 1.3E-11 94.8 10.6 94 4-98 230-328 (531)
329 KOG0478|consensus 98.5 1.4E-06 3.1E-11 89.7 12.5 128 308-442 464-625 (804)
330 TIGR01447 recD exodeoxyribonuc 98.5 4.2E-07 9E-12 96.5 8.9 100 308-410 162-295 (586)
331 TIGR02688 conserved hypothetic 98.4 5.3E-06 1.1E-10 82.7 15.3 97 299-411 204-313 (449)
332 COG0606 Predicted ATPase with 98.4 1E-07 2.2E-12 95.2 3.0 146 287-434 181-383 (490)
333 TIGR00635 ruvB Holliday juncti 98.4 1.6E-06 3.5E-11 85.8 11.6 95 7-101 129-228 (305)
334 TIGR01128 holA DNA polymerase 98.4 2E-06 4.3E-11 85.0 12.1 102 1-103 71-179 (302)
335 PRK10536 hypothetical protein; 98.4 3.4E-07 7.3E-12 85.5 5.9 38 371-411 176-213 (262)
336 PRK00080 ruvB Holliday junctio 98.4 1.5E-06 3.3E-11 86.7 10.9 92 8-99 151-247 (328)
337 PF03215 Rad17: Rad17 cell cyc 98.4 1.4E-06 3E-11 90.8 10.6 129 308-442 47-225 (519)
338 PRK06620 hypothetical protein; 98.4 2.9E-06 6.2E-11 78.8 11.3 78 21-98 129-212 (214)
339 COG1618 Predicted nucleotide k 98.4 1.1E-06 2.3E-11 74.8 7.6 25 309-333 8-32 (179)
340 PHA00729 NTP-binding motif con 98.4 5.7E-06 1.2E-10 76.1 12.9 114 305-442 16-139 (226)
341 PF00931 NB-ARC: NB-ARC domain 98.4 1.2E-06 2.5E-11 86.0 8.5 131 308-442 21-169 (287)
342 KOG1968|consensus 98.3 2.6E-06 5.7E-11 93.1 11.3 126 309-442 360-501 (871)
343 PF03266 NTPase_1: NTPase; In 98.3 7.1E-07 1.5E-11 79.3 5.5 63 371-436 95-164 (168)
344 PRK13406 bchD magnesium chelat 98.3 2.5E-05 5.4E-10 82.8 17.9 129 305-437 24-176 (584)
345 COG3267 ExeA Type II secretory 98.3 5.8E-06 1.2E-10 76.1 11.3 172 267-442 13-212 (269)
346 PRK08699 DNA polymerase III su 98.3 5.2E-07 1.1E-11 89.0 4.9 65 1-73 137-201 (325)
347 CHL00195 ycf46 Ycf46; Provisio 98.3 1E-05 2.2E-10 84.0 14.0 189 17-216 123-332 (489)
348 PHA02774 E1; Provisional 98.3 5.4E-06 1.2E-10 85.5 11.4 118 293-430 420-555 (613)
349 PRK06893 DNA replication initi 98.3 6.1E-06 1.3E-10 77.7 11.0 93 7-99 125-227 (229)
350 PRK09087 hypothetical protein; 98.3 4.9E-06 1.1E-10 77.9 10.0 94 7-100 117-220 (226)
351 COG3284 AcoR Transcriptional a 98.3 4.1E-06 8.8E-11 86.5 9.7 172 308-498 338-536 (606)
352 COG1241 MCM2 Predicted ATPase 98.3 4.8E-07 1E-11 95.7 3.0 127 307-440 320-480 (682)
353 PF00493 MCM: MCM2/3/5 family 98.2 1.6E-07 3.6E-12 93.2 -0.7 118 307-431 58-209 (331)
354 PF00910 RNA_helicase: RNA hel 98.2 2.2E-06 4.9E-11 70.2 6.1 73 309-397 1-79 (107)
355 PHA02624 large T antigen; Prov 98.2 2.8E-05 6.1E-10 80.7 15.3 128 293-443 417-573 (647)
356 KOG1970|consensus 98.2 6.6E-06 1.4E-10 83.2 10.4 128 309-442 113-279 (634)
357 TIGR02881 spore_V_K stage V sp 98.2 4.5E-06 9.7E-11 80.4 8.5 86 1-86 137-238 (261)
358 PRK05642 DNA replication initi 98.2 1.3E-05 2.8E-10 75.7 10.9 93 7-99 130-232 (234)
359 COG4650 RtcR Sigma54-dependent 98.2 4.4E-06 9.6E-11 77.7 7.1 90 308-397 210-308 (531)
360 PRK04296 thymidine kinase; Pro 98.1 2.3E-05 5E-10 71.5 11.3 93 309-410 5-115 (190)
361 TIGR02768 TraA_Ti Ti-type conj 98.1 7.7E-06 1.7E-10 89.9 9.0 96 308-410 370-476 (744)
362 TIGR00602 rad24 checkpoint pro 98.1 1.3E-05 2.8E-10 85.4 9.2 66 20-85 256-330 (637)
363 PTZ00112 origin recognition co 98.1 2.4E-05 5.2E-10 84.0 10.8 93 5-97 900-1001(1164)
364 PRK08903 DnaA regulatory inact 98.0 5.6E-05 1.2E-09 71.2 11.7 93 8-100 123-224 (227)
365 PRK13889 conjugal transfer rel 98.0 1.3E-05 2.8E-10 89.4 8.2 96 308-410 364-470 (988)
366 COG5271 MDN1 AAA ATPase contai 98.0 0.00011 2.5E-09 82.5 14.0 129 308-442 1545-1702(4600)
367 cd00561 CobA_CobO_BtuR ATP:cor 98.0 3.9E-05 8.5E-10 66.9 8.6 109 308-422 4-146 (159)
368 PF05970 PIF1: PIF1-like helic 98.0 1.5E-05 3.3E-10 80.5 7.0 116 292-411 8-151 (364)
369 cd01120 RecA-like_NTPases RecA 97.9 8.6E-05 1.9E-09 65.7 10.9 23 309-331 2-24 (165)
370 PF03969 AFG1_ATPase: AFG1-lik 97.9 5.1E-06 1.1E-10 83.0 3.1 117 306-430 62-201 (362)
371 COG5271 MDN1 AAA ATPase contai 97.9 8.8E-05 1.9E-09 83.3 12.3 135 309-452 891-1060(4600)
372 KOG2228|consensus 97.9 0.00017 3.6E-09 69.0 12.3 147 295-442 38-218 (408)
373 PF06309 Torsin: Torsin; Inte 97.9 6.9E-05 1.5E-09 61.9 8.3 60 275-334 15-81 (127)
374 TIGR02903 spore_lon_C ATP-depe 97.9 9.1E-05 2E-09 79.7 11.3 76 8-84 324-400 (615)
375 COG4088 Predicted nucleotide k 97.8 0.00012 2.6E-09 65.1 9.5 27 307-333 2-28 (261)
376 PF02562 PhoH: PhoH-like prote 97.8 2E-05 4.3E-10 71.8 4.8 102 308-412 21-157 (205)
377 TIGR03420 DnaA_homol_Hda DnaA 97.8 0.00014 3E-09 68.4 10.8 92 8-99 124-225 (226)
378 PRK13826 Dtr system oriT relax 97.8 8.1E-05 1.8E-09 83.6 10.4 96 308-410 399-505 (1102)
379 PRK05986 cob(I)alamin adenolsy 97.8 7.6E-05 1.7E-09 66.8 8.0 103 307-412 23-159 (191)
380 PF05496 RuvB_N: Holliday junc 97.8 3.7E-05 8E-10 70.2 6.0 78 7-84 149-227 (233)
381 KOG0477|consensus 97.8 1.1E-05 2.4E-10 82.3 2.9 123 308-439 484-645 (854)
382 CHL00181 cbbX CbbX; Provisiona 97.8 3.9E-05 8.4E-10 74.6 6.4 87 1-87 155-255 (287)
383 PF13191 AAA_16: AAA ATPase do 97.8 3.9E-05 8.4E-10 69.6 6.1 32 302-333 20-51 (185)
384 COG4619 ABC-type uncharacteriz 97.8 0.00019 4.2E-09 61.7 9.6 23 308-330 31-53 (223)
385 PF12780 AAA_8: P-loop contain 97.8 0.00022 4.8E-09 68.3 11.1 138 297-442 23-209 (268)
386 PRK05629 hypothetical protein; 97.8 0.0002 4.4E-09 71.1 11.2 102 2-103 89-193 (318)
387 PF04665 Pox_A32: Poxvirus A32 97.8 0.0014 3E-08 61.2 15.7 131 308-442 15-169 (241)
388 TIGR00708 cobA cob(I)alamin ad 97.8 0.00026 5.7E-09 62.5 10.4 106 308-422 7-148 (173)
389 PRK12422 chromosomal replicati 97.7 0.00018 3.9E-09 74.2 10.5 95 7-101 235-342 (445)
390 COG1373 Predicted ATPase (AAA+ 97.7 0.00046 9.9E-09 70.4 13.0 131 295-438 27-162 (398)
391 KOG1968|consensus 97.7 6.8E-05 1.5E-09 82.3 7.1 153 100-257 308-538 (871)
392 PRK07452 DNA polymerase III su 97.7 0.00027 5.8E-09 70.6 10.8 101 1-101 88-198 (326)
393 PRK00149 dnaA chromosomal repl 97.7 0.00021 4.6E-09 74.5 10.1 93 9-101 246-348 (450)
394 TIGR02880 cbbX_cfxQ probable R 97.7 6.1E-05 1.3E-09 73.2 5.5 87 1-87 154-254 (284)
395 PF05272 VirE: Virulence-assoc 97.7 0.00016 3.6E-09 65.9 8.0 99 309-429 55-169 (198)
396 PRK05574 holA DNA polymerase I 97.7 0.00056 1.2E-08 68.7 12.7 97 7-103 111-214 (340)
397 PF09848 DUF2075: Uncharacteri 97.6 0.00015 3.3E-09 73.1 8.3 22 309-330 4-25 (352)
398 PRK14532 adenylate kinase; Pro 97.6 0.00097 2.1E-08 60.8 12.6 23 308-330 2-24 (188)
399 PRK07914 hypothetical protein; 97.6 0.00062 1.3E-08 67.7 12.1 103 1-103 88-195 (320)
400 PRK13709 conjugal transfer nic 97.6 0.00023 5.1E-09 83.6 10.0 100 308-410 986-1099(1747)
401 cd01124 KaiC KaiC is a circadi 97.6 0.00042 9.1E-09 63.0 9.9 24 309-332 2-25 (187)
402 PRK14528 adenylate kinase; Pro 97.6 0.00084 1.8E-08 61.0 11.6 23 308-330 3-25 (186)
403 KOG0482|consensus 97.6 0.00036 7.7E-09 70.0 9.6 110 308-424 377-518 (721)
404 KOG0481|consensus 97.6 8.3E-05 1.8E-09 74.5 5.1 121 307-434 365-517 (729)
405 COG4178 ABC-type uncharacteriz 97.6 0.00029 6.2E-09 73.8 9.2 43 370-412 532-575 (604)
406 PRK14722 flhF flagellar biosyn 97.6 0.00097 2.1E-08 66.7 12.5 24 308-331 139-162 (374)
407 PRK14712 conjugal transfer nic 97.6 0.00029 6.2E-09 81.8 9.8 100 308-410 854-967 (1623)
408 COG1936 Predicted nucleotide k 97.6 0.0011 2.3E-08 57.8 10.8 140 308-480 2-156 (180)
409 PRK06851 hypothetical protein; 97.5 0.00028 6.1E-09 70.2 8.4 25 309-333 217-241 (367)
410 TIGR01618 phage_P_loop phage n 97.5 6.2E-05 1.3E-09 69.5 3.5 21 308-328 14-34 (220)
411 TIGR00362 DnaA chromosomal rep 97.5 0.00048 1E-08 70.9 10.3 96 7-102 232-337 (405)
412 COG3854 SpoIIIAA ncharacterize 97.5 0.00027 5.8E-09 64.0 7.1 92 306-408 137-250 (308)
413 TIGR02928 orc1/cdc6 family rep 97.5 0.00081 1.8E-08 68.3 11.8 92 6-97 164-269 (365)
414 PRK04841 transcriptional regul 97.5 0.0021 4.5E-08 73.6 16.1 140 307-452 33-214 (903)
415 PF13207 AAA_17: AAA domain; P 97.5 9.8E-05 2.1E-09 61.9 3.9 22 309-330 2-23 (121)
416 KOG3347|consensus 97.5 0.0001 2.2E-09 62.0 3.7 27 304-330 5-31 (176)
417 PF14516 AAA_35: AAA-like doma 97.5 0.0046 1E-07 61.6 16.1 142 308-452 33-228 (331)
418 cd00046 DEXDc DEAD-like helica 97.5 0.00055 1.2E-08 58.4 8.4 25 308-332 2-26 (144)
419 TIGR02858 spore_III_AA stage I 97.5 0.00047 1E-08 66.1 8.5 28 304-331 109-136 (270)
420 COG1223 Predicted ATPase (AAA+ 97.5 0.00016 3.6E-09 66.5 4.9 124 109-257 118-248 (368)
421 PRK06585 holA DNA polymerase I 97.5 0.0018 4E-08 65.1 13.1 104 1-104 102-212 (343)
422 PRK14088 dnaA chromosomal repl 97.4 0.00041 9E-09 71.8 8.3 93 8-100 228-330 (440)
423 TIGR01613 primase_Cterm phage/ 97.4 0.0014 3E-08 64.6 11.6 138 279-429 43-203 (304)
424 PF06144 DNA_pol3_delta: DNA p 97.4 0.00034 7.4E-09 62.7 6.6 83 1-83 85-171 (172)
425 PF00448 SRP54: SRP54-type pro 97.4 0.001 2.2E-08 60.8 9.4 102 309-411 4-126 (196)
426 PF13245 AAA_19: Part of AAA d 97.4 0.00033 7.1E-09 53.1 5.0 24 308-331 12-35 (76)
427 TIGR02237 recomb_radB DNA repa 97.4 0.00091 2E-08 62.1 9.1 35 309-346 15-49 (209)
428 PRK12608 transcription termina 97.4 0.0076 1.6E-07 59.9 15.6 29 304-332 131-159 (380)
429 PF05707 Zot: Zonular occluden 97.4 0.00021 4.5E-09 65.4 4.4 52 371-422 79-137 (193)
430 PRK13695 putative NTPase; Prov 97.3 0.0016 3.4E-08 58.5 10.0 65 370-437 95-166 (174)
431 cd01131 PilT Pilus retraction 97.3 0.0023 4.9E-08 58.8 11.2 24 308-331 3-26 (198)
432 PRK12723 flagellar biosynthesi 97.3 0.0027 5.9E-08 64.0 12.5 127 307-434 175-326 (388)
433 COG1126 GlnQ ABC-type polar am 97.3 0.001 2.2E-08 60.1 8.2 41 371-411 154-196 (240)
434 COG1485 Predicted ATPase [Gene 97.3 9.3E-05 2E-09 71.5 1.8 116 308-430 67-204 (367)
435 TIGR02760 TraI_TIGR conjugativ 97.3 0.00048 1E-08 83.1 8.1 96 308-409 448-565 (1960)
436 PRK14974 cell division protein 97.3 0.0046 1E-07 61.2 13.5 25 308-332 142-166 (336)
437 PRK08487 DNA polymerase III su 97.3 0.002 4.4E-08 64.2 11.1 102 1-103 95-201 (328)
438 PF01443 Viral_helicase1: Vira 97.3 0.00044 9.5E-09 65.4 6.0 21 309-329 1-21 (234)
439 PRK06067 flagellar accessory p 97.3 0.0024 5.2E-08 60.4 10.9 22 309-330 28-49 (234)
440 PF10443 RNA12: RNA12 protein; 97.3 0.012 2.7E-07 59.0 16.1 71 371-442 148-228 (431)
441 PF00519 PPV_E1_C: Papillomavi 97.3 0.0012 2.5E-08 65.0 8.6 134 276-430 231-383 (432)
442 PRK05800 cobU adenosylcobinami 97.3 0.0022 4.7E-08 57.2 9.8 23 308-330 3-25 (170)
443 COG1119 ModF ABC-type molybden 97.3 0.0016 3.5E-08 60.0 8.9 53 370-422 188-244 (257)
444 cd03228 ABCC_MRP_Like The MRP 97.3 0.00062 1.3E-08 61.0 6.3 45 370-414 113-158 (171)
445 PRK00411 cdc6 cell division co 97.2 0.0025 5.4E-08 65.5 11.6 93 7-99 173-279 (394)
446 PRK00279 adk adenylate kinase; 97.2 0.0047 1E-07 57.6 12.4 22 309-330 3-24 (215)
447 cd01128 rho_factor Transcripti 97.2 0.00055 1.2E-08 64.9 6.1 26 307-332 17-42 (249)
448 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.0058 1.3E-07 55.3 12.7 22 309-330 2-23 (183)
449 COG0703 AroK Shikimate kinase 97.2 0.0055 1.2E-07 53.9 11.6 32 307-344 3-34 (172)
450 PRK05703 flhF flagellar biosyn 97.2 0.0012 2.6E-08 67.8 8.7 112 308-422 223-354 (424)
451 PRK08118 topology modulation p 97.2 0.00032 6.9E-09 62.5 4.0 23 308-330 3-25 (167)
452 PTZ00202 tuzin; Provisional 97.2 0.019 4E-07 57.9 16.5 37 416-452 407-445 (550)
453 cd03214 ABC_Iron-Siderophores_ 97.2 0.0012 2.6E-08 59.7 7.6 43 370-412 114-159 (180)
454 cd03216 ABC_Carb_Monos_I This 97.2 0.0013 2.9E-08 58.3 7.7 100 308-412 28-143 (163)
455 PF06068 TIP49: TIP49 C-termin 97.2 0.0011 2.4E-08 65.0 7.6 78 6-83 306-396 (398)
456 cd03247 ABCC_cytochrome_bd The 97.2 0.00058 1.2E-08 61.6 5.3 45 370-414 115-160 (178)
457 PRK08533 flagellar accessory p 97.2 0.0031 6.8E-08 59.3 10.4 23 309-331 27-49 (230)
458 smart00487 DEXDc DEAD-like hel 97.2 0.00081 1.8E-08 61.2 6.4 41 371-411 129-170 (201)
459 cd01121 Sms Sms (bacterial rad 97.2 0.0026 5.6E-08 64.1 10.3 34 309-345 85-118 (372)
460 PLN02674 adenylate kinase 97.2 0.0048 1E-07 58.1 11.4 24 307-330 32-55 (244)
461 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0046 1E-07 53.6 10.5 94 308-412 28-128 (144)
462 cd03246 ABCC_Protease_Secretio 97.1 0.0012 2.7E-08 59.1 7.0 43 370-412 113-157 (173)
463 PRK14700 recombination factor 97.1 0.0033 7.3E-08 60.1 10.0 113 400-514 7-178 (300)
464 PRK09361 radB DNA repair and r 97.1 0.002 4.3E-08 60.6 8.5 25 309-333 26-50 (225)
465 PF07693 KAP_NTPase: KAP famil 97.1 0.0066 1.4E-07 60.5 12.6 41 370-410 171-213 (325)
466 PRK14087 dnaA chromosomal repl 97.1 0.0023 5E-08 66.4 9.3 92 9-100 241-346 (450)
467 PRK03839 putative kinase; Prov 97.1 0.00056 1.2E-08 61.8 4.1 23 308-330 2-24 (180)
468 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0034 7.3E-08 59.5 9.5 34 309-345 24-57 (237)
469 PRK00625 shikimate kinase; Pro 97.1 0.00059 1.3E-08 61.0 4.0 31 308-344 2-32 (173)
470 PF13479 AAA_24: AAA domain 97.1 0.0005 1.1E-08 63.9 3.8 63 308-383 5-80 (213)
471 PRK00131 aroK shikimate kinase 97.1 0.00067 1.4E-08 60.9 4.5 23 308-330 6-28 (175)
472 COG1124 DppF ABC-type dipeptid 97.0 0.0018 4E-08 59.5 7.1 52 370-422 158-212 (252)
473 PRK11823 DNA repair protein Ra 97.0 0.0034 7.4E-08 65.0 10.1 34 309-345 83-116 (446)
474 PF08433 KTI12: Chromatin asso 97.0 0.0037 8E-08 60.0 9.6 87 307-400 2-98 (270)
475 PRK13947 shikimate kinase; Pro 97.0 0.00069 1.5E-08 60.7 4.4 23 308-330 3-25 (171)
476 PRK13808 adenylate kinase; Pro 97.0 0.0069 1.5E-07 59.5 11.6 23 308-330 2-24 (333)
477 PRK09376 rho transcription ter 97.0 0.001 2.2E-08 66.2 5.8 29 304-332 167-195 (416)
478 PLN03210 Resistant to P. syrin 97.0 0.0046 1E-07 72.2 12.2 128 308-441 209-362 (1153)
479 cd00267 ABC_ATPase ABC (ATP-bi 97.0 0.0042 9.1E-08 54.7 9.2 96 308-412 27-141 (157)
480 PRK05907 hypothetical protein; 97.0 0.0091 2E-07 58.6 12.3 101 1-103 93-204 (311)
481 PRK14527 adenylate kinase; Pro 97.0 0.0064 1.4E-07 55.5 10.6 23 308-330 8-30 (191)
482 cd03222 ABC_RNaseL_inhibitor T 97.0 0.0067 1.5E-07 54.4 10.3 100 308-412 27-133 (177)
483 COG1125 OpuBA ABC-type proline 97.0 0.0039 8.5E-08 57.7 8.7 23 308-330 29-51 (309)
484 cd00544 CobU Adenosylcobinamid 97.0 0.0081 1.7E-07 53.4 10.6 21 309-329 2-22 (169)
485 cd02020 CMPK Cytidine monophos 97.0 0.011 2.3E-07 51.2 11.4 22 309-330 2-23 (147)
486 PF13671 AAA_33: AAA domain; P 97.0 0.00046 1E-08 59.7 2.6 22 309-330 2-23 (143)
487 TIGR02760 TraI_TIGR conjugativ 97.0 0.0019 4.2E-08 78.0 8.6 99 308-411 1038-1150(1960)
488 PRK04328 hypothetical protein; 97.0 0.0043 9.3E-08 59.2 9.4 22 309-330 26-47 (249)
489 TIGR01420 pilT_fam pilus retra 97.0 0.0051 1.1E-07 61.7 10.3 25 307-331 123-147 (343)
490 TIGR00150 HI0065_YjeE ATPase, 97.0 0.001 2.2E-08 56.2 4.3 25 308-332 24-48 (133)
491 COG1116 TauB ABC-type nitrate/ 97.0 0.0014 3E-08 60.8 5.5 23 308-330 31-53 (248)
492 KOG1808|consensus 97.0 0.003 6.5E-08 73.8 9.4 126 308-442 442-598 (1856)
493 KOG2543|consensus 96.9 0.0096 2.1E-07 58.3 11.4 135 308-442 32-192 (438)
494 KOG0479|consensus 96.9 0.0016 3.4E-08 66.7 6.3 112 308-427 336-480 (818)
495 TIGR02868 CydC thiol reductant 96.9 0.0017 3.8E-08 69.4 7.1 41 370-410 487-528 (529)
496 cd02019 NK Nucleoside/nucleoti 96.9 0.00088 1.9E-08 49.9 3.4 22 309-330 2-23 (69)
497 COG2255 RuvB Holliday junction 96.9 0.0086 1.9E-07 56.3 10.5 89 7-95 151-244 (332)
498 TIGR00767 rho transcription te 96.9 0.0024 5.1E-08 63.9 7.3 29 304-332 166-194 (415)
499 TIGR02238 recomb_DMC1 meiotic 96.9 0.011 2.4E-07 58.1 12.0 22 309-330 99-120 (313)
500 PF13238 AAA_18: AAA domain; P 96.9 0.00069 1.5E-08 57.3 3.0 22 309-330 1-22 (129)
No 1
>KOG0991|consensus
Probab=100.00 E-value=1.5e-34 Score=254.59 Aligned_cols=238 Identities=35% Similarity=0.558 Sum_probs=215.5
Q ss_pred hhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhccc
Q psy4285 287 LNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKT 366 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (533)
..|+++.++.+.-+...+..||++|.|||||||||.+.++|++++++. +...++++|+++.++.+++|+.++.|++.+.
T Consensus 29 IVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~-~ke~vLELNASdeRGIDvVRn~IK~FAQ~kv 107 (333)
T KOG0991|consen 29 IVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDS-YKEAVLELNASDERGIDVVRNKIKMFAQKKV 107 (333)
T ss_pred hhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChh-hhhHhhhccCccccccHHHHHHHHHHHHhhc
Confidence 368899999999999999999999999999999999999999998875 4678999999999999999999999998776
Q ss_pred CC-CCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC---
Q psy4285 367 MH-KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD--- 442 (533)
Q Consensus 367 ~~-~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~--- 442 (533)
.. +++.+++|+||+|+|+..+|.+|.+.||-++..++|.++||...++.+++.|||..++|..+++.++..+|..+
T Consensus 108 ~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~ 187 (333)
T KOG0991|consen 108 TLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKA 187 (333)
T ss_pred cCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHH
Confidence 55 36789999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ---------------------------------------------------HHHHHHHHHH---------HHHHHHHHHh
Q psy4285 443 ---------------------------------------------------DISFFNIIIW---------YIKIQEIKIE 462 (533)
Q Consensus 443 ---------------------------------------------------~~~~~~ll~~---------~~~l~~l~~~ 462 (533)
|.-+.+++.. ++.+..+ ..
T Consensus 188 Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~~~~~A~~il~~l-w~ 266 (333)
T KOG0991|consen 188 EKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKRNIDEALKILAEL-WK 266 (333)
T ss_pred hCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHhccHHHHHHHHHHH-HH
Confidence 3444444433 5666665 56
Q ss_pred cCCCHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhHh
Q psy4285 463 KGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKL 526 (533)
Q Consensus 463 ~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~~~~~~~~~~~~ 526 (533)
.|||+.||+..++++++..+.++..+.++++.++..++|+..|+.+.+++..+++++..+-++=
T Consensus 267 lgysp~Dii~~~FRv~K~~~~~E~~rlE~ikeig~thmrI~eGv~s~LQl~glla~l~~~~~k~ 330 (333)
T KOG0991|consen 267 LGYSPEDIITTLFRVVKNMDVAESLRLEFIKEIGLTHMRILEGVNSLLQLSGLLAKLCKVGEKA 330 (333)
T ss_pred cCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHhHHHhhHhHHHHHHHHHHHHHHhcccc
Confidence 7999999999999999999999999999999999999999999999999999999998776543
No 2
>PLN03025 replication factor C subunit; Provisional
Probab=99.97 E-value=1.3e-29 Score=250.88 Aligned_cols=239 Identities=37% Similarity=0.566 Sum_probs=203.8
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccC
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTM 367 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (533)
.|++++...|+.++..+..||++|+|||||||||+|+++|+++++.. +...++++++++.++.+.+++.++.+......
T Consensus 16 ~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~ 94 (319)
T PLN03025 16 VGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN-YKEAVLELNASDDRGIDVVRNKIKMFAQKKVT 94 (319)
T ss_pred cCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccc-CccceeeecccccccHHHHHHHHHHHHhcccc
Confidence 46778888888888888889999999999999999999999997764 34568889999888888899888877654322
Q ss_pred C-CCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC----
Q psy4285 368 H-KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD---- 442 (533)
Q Consensus 368 ~-~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~---- 442 (533)
. .+.++++||||+|.|+..++++|++.+|.++.+++||++||....+.++|+|||..+.|.+++++++..++..+
T Consensus 95 ~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~e 174 (319)
T PLN03025 95 LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAE 174 (319)
T ss_pred CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHc
Confidence 1 24589999999999999999999999999888999999999999999999999999999999999999999876
Q ss_pred --------------------------------------------------HHHHHHHHHH---------HHHHHHHHHhc
Q psy4285 443 --------------------------------------------------DISFFNIIIW---------YIKIQEIKIEK 463 (533)
Q Consensus 443 --------------------------------------------------~~~~~~ll~~---------~~~l~~l~~~~ 463 (533)
+..+..+++. +..+.++ ...
T Consensus 175 gi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~~~~~~~a~~~l~~l-l~~ 253 (319)
T PLN03025 175 KVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLKGKFDDACDGLKQL-YDL 253 (319)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH-HHc
Confidence 1122222222 3445555 456
Q ss_pred CCCHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhHhcC
Q psy4285 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEA 528 (533)
Q Consensus 464 ~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~~~~~~~~~~~~~~ 528 (533)
|+++.+|+..+++.+...++++..+.+++.+++++++|+..|+++.+||++|+++++.+.+.-.|
T Consensus 254 g~~~~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~a~~~~~~~~~~~~~~ 318 (319)
T PLN03025 254 GYSPTDIITTLFRVVKNYDMPEFLKLEYLREIGFAHMRICDGVGSLLQLSGLLAKLCLVRETAKA 318 (319)
T ss_pred CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999988888999999999999999999999999999999999999999876544
No 3
>KOG0989|consensus
Probab=99.97 E-value=4.9e-30 Score=236.09 Aligned_cols=236 Identities=37% Similarity=0.629 Sum_probs=201.8
Q ss_pred hhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhccc
Q psy4285 287 LNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKT 366 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (533)
..+|+.++..|...+.++..||+|||||||||||++|+++|++++|+..+...+.++|+++.+|...+++.++.|++...
T Consensus 38 ~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~ 117 (346)
T KOG0989|consen 38 LAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTV 117 (346)
T ss_pred hcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhh
Confidence 35788889999888888888999999999999999999999999997766777889999999999999999988876433
Q ss_pred CC-------CCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHh
Q psy4285 367 MH-------KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 367 ~~-------~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l 439 (533)
.. ...++|+|+||+|.|+.++|++|++.||.++.+++||++||+.+++++++.|||.+++|.++.++.+.++|
T Consensus 118 ~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL 197 (346)
T KOG0989|consen 118 LLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRL 197 (346)
T ss_pred ccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHH
Confidence 22 23469999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC-------------------------------------------------------HHHHHHHHHH---------HHH
Q psy4285 440 DYD-------------------------------------------------------DISFFNIIIW---------YIK 455 (533)
Q Consensus 440 ~~~-------------------------------------------------------~~~~~~ll~~---------~~~ 455 (533)
+.| .+.+.++++. ...
T Consensus 198 ~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S~d~~~~v~~ 277 (346)
T KOG0989|consen 198 EKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLDLLELALSADTPNTVKR 277 (346)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHHHHHHHHccChHHHHHH
Confidence 998 1112223322 223
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q psy4285 456 IQEIKIEKGLALTDILTEISLLVHRL-EIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523 (533)
Q Consensus 456 l~~l~~~~~~~~~di~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~~~~~~~~~ 523 (533)
+.++ ...|+++..+++++..++... ...+..+..+-..+...+.++..|.+..++|-.|..+.+.++
T Consensus 278 ~Rei-~~sg~~~~~lmsQLa~vi~~~~g~~d~~k~~~~~kl~~~~~~~~dg~~l~~~L~~L~~~~~ql~ 345 (346)
T KOG0989|consen 278 VREI-MRSGYSPLQLMSQLAEVIMDIIGLSDEQKAQISLKLFTRDKRLEDGEDLELALKDLLEAEKQLR 345 (346)
T ss_pred HHHH-HHhccCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhccchhhcchhHHHHHHHHHHHHHHHh
Confidence 3333 456999999999999999887 677888888888888999999999999999999998887764
No 4
>KOG2035|consensus
Probab=99.96 E-value=3.6e-28 Score=219.95 Aligned_cols=240 Identities=26% Similarity=0.431 Sum_probs=201.3
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccc-----------------------cCcceEEec
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ-----------------------FNAMVLELN 344 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~-----------------------~~~~~~~~~ 344 (533)
.++++....+......+..||+++|||+|+||.|.+.++.+++++.+. .....++++
T Consensus 16 ~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEit 95 (351)
T KOG2035|consen 16 IYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEIT 95 (351)
T ss_pred ccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeC
Confidence 445666667777777788899999999999999999999999998653 112356777
Q ss_pred CCCCCchh--HHHHHHHHHHhcccCC---CCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhh
Q psy4285 345 ASDDRGIG--IVRDQIFQFASTKTMH---KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419 (533)
Q Consensus 345 ~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~ 419 (533)
+++....+ .+.++++..+++.+.. ....+|++|-|+|.++.++|.+|.++||+|..++++|++||..+++.++++
T Consensus 96 PSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIr 175 (351)
T KOG2035|consen 96 PSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIR 175 (351)
T ss_pred hhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHh
Confidence 88765544 6788888888776543 346899999999999999999999999999999999999999999999999
Q ss_pred ccceeeeecCCCHHHHHHHhhcC-------------------------------------------------HHHHHH--
Q psy4285 420 SRCTRFRFGPLDSSLIMSRLDYD-------------------------------------------------DISFFN-- 448 (533)
Q Consensus 420 sR~~~i~~~~~~~~~~~~~l~~~-------------------------------------------------~~~~~~-- 448 (533)
|||..++.+.|+++++..++..+ +.|+.-
T Consensus 176 SRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i 255 (351)
T KOG2035|consen 176 SRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYI 255 (351)
T ss_pred hheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHH
Confidence 99999999999999999999887 111111
Q ss_pred ---------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhCCCChHHHHH
Q psy4285 449 ---------------IIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 513 (533)
Q Consensus 449 ---------------ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~ 513 (533)
+++.++.++++ ..++++|.-|+.++...+.. ..+...+.+++++++++++|+..|.+..+||+
T Consensus 256 ~e~a~~i~~eQs~~~L~~vR~~LYeL-L~~CIPP~~Ilk~Ll~~Ll~-~~d~~~k~~~~~~Aa~yEhRl~lG~KaIfHLE 333 (351)
T KOG2035|consen 256 QEIARVILKEQSPAKLLEVRGRLYEL-LSHCIPPNTILKELLEELLL-KCDTQLKLEVIQHAAKYEHRLRLGQKAIFHLE 333 (351)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHH-HhccCChHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHHhhcchhhhhHH
Confidence 12227777777 67899999999999988766 55788999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhcCC
Q psy4285 514 ALIAAFNSARDKLEAP 529 (533)
Q Consensus 514 ~~~~~~~~~~~~~~~~ 529 (533)
+|+|++|.+-..+.-.
T Consensus 334 aFVA~fM~iy~~~~~~ 349 (351)
T KOG2035|consen 334 AFVAKFMCIYKKFLSS 349 (351)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999998877544
No 5
>KOG0991|consensus
Probab=99.94 E-value=1e-26 Score=205.33 Aligned_cols=201 Identities=35% Similarity=0.471 Sum_probs=168.2
Q ss_pred hhccccchhHHHHHhchHHHHhhcCCChhhHHHHHhhccCccccccCCCChhhHHHHHHHHHhcccccceeeeecCCccc
Q psy4285 101 SRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDR 180 (533)
Q Consensus 101 ~~~ek~~~~~l~~lls~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~~~~e~nasd~~ 180 (533)
+|++||+|..+.++++|++.+..+.... . -....+....||||+|||+.+.+++..+.+...+..|+|+||||+|
T Consensus 16 ~wVeKYrP~~l~dIVGNe~tv~rl~via----~-~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR 90 (333)
T KOG0991|consen 16 PWVEKYRPSVLQDIVGNEDTVERLSVIA----K-EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER 90 (333)
T ss_pred hHHHhhCchHHHHhhCCHHHHHHHHHHH----H-cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc
Confidence 5999999999999999999887653210 0 1234567788999999999999999999988889999999999999
Q ss_pred chhhhHHHHhhhhhcccc-cCCCceEEEEcCccccCHHHHHHHHc-----------------------------------
Q psy4285 181 GIGIVRDQIFQFASTKTM-HKSSYKLIILDEADAMTNDAQNALRR----------------------------------- 224 (533)
Q Consensus 181 g~~~~~d~i~~~a~~~~l-~~~~~~~iilDE~d~l~~~a~~~LRr----------------------------------- 224 (533)
|++++|.+|+.||+++.. ++++.|++||||+|+|+..||++|||
T Consensus 91 GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRCAiLRys 170 (333)
T KOG0991|consen 91 GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPIQSRCAILRYS 170 (333)
T ss_pred ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhHHhhhHhhhhc
Confidence 999999999999998854 56677899999999999999999998
Q ss_pred ------------------cCCCChhHHHHHHHhccCchHHhhcHHHHHHhhcCCCCCccccccccCCCCHHHHHHHHHHH
Q psy4285 225 ------------------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWL 286 (533)
Q Consensus 225 ------------------~~~~~~~~l~~l~~~s~~di~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 286 (533)
.+++++++|++++..++||+|+++|.||+....+ .-++.+++|+..+.|++.-+...+...
T Consensus 171 klsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~-g~Vn~enVfKv~d~PhP~~v~~ml~~~ 249 (333)
T KOG0991|consen 171 KLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGF-GLVNQENVFKVCDEPHPLLVKKMLQAC 249 (333)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccc-cccchhhhhhccCCCChHHHHHHHHHH
Confidence 2589999999999999999999999999987764 456778899999999999999888766
Q ss_pred hhh-chhhhhhhcccccccCCC
Q psy4285 287 LNE-SMDLCYKINRFIDENELP 307 (533)
Q Consensus 287 ~~~-~~~~~~~l~~~~~~~~~~ 307 (533)
... -++..+.+..+.+.+..|
T Consensus 250 ~~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 250 LKRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred HhccHHHHHHHHHHHHHcCCCH
Confidence 543 245555566665555443
No 6
>KOG0990|consensus
Probab=99.94 E-value=9.1e-26 Score=209.07 Aligned_cols=239 Identities=46% Similarity=0.628 Sum_probs=210.5
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhccc-
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKT- 366 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 366 (533)
.++++.+..+.++...++.||+|+|||||||||+...+.|+.++++.++...+.++++++.++.+.+++.++.|+.+..
T Consensus 44 ~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~ 123 (360)
T KOG0990|consen 44 IKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQP 123 (360)
T ss_pred hcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhccc
Confidence 4678888888899999999999999999999999999999999997767778999999999999999999888877653
Q ss_pred -CCCC--CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC-
Q psy4285 367 -MHKS--SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD- 442 (533)
Q Consensus 367 -~~~~--~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~- 442 (533)
.+.. .++++|+||+|.|+.++||+|.+.++++..+++|++++|++..+.|+++|||..++|.|++..+...++.++
T Consensus 124 ~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~ 203 (360)
T KOG0990|consen 124 TTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIR 203 (360)
T ss_pred eeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCchhhcccccCCCCCCChhhhhhHHHHHH
Confidence 2333 789999999999999999999999999999999999999999999999999999999999999988888887
Q ss_pred ----------------------------------------------------------HHHHHHHHHH---------HHH
Q psy4285 443 ----------------------------------------------------------DISFFNIIIW---------YIK 455 (533)
Q Consensus 443 ----------------------------------------------------------~~~~~~ll~~---------~~~ 455 (533)
|.++++++++ +..
T Consensus 204 e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g~p~~~dI~~I~~~il~~~~~~~~~~ 283 (360)
T KOG0990|consen 204 ESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKGAPQPSDIRQIIEKRMNGEDIELMLD 283 (360)
T ss_pred hcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcCCCChhHHHHHHHHHhcCchHHHHhh
Confidence 5577777776 334
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhHh
Q psy4285 456 IQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKL 526 (533)
Q Consensus 456 l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~~~~~~~~~~~~ 526 (533)
+..+....|+.-.|++.++...+.....+..++..++..++.+++++..|-++..++.++++.|..-+..+
T Consensus 284 is~lk~~~gla~~d~i~~l~~~~~~~~~~~~~~~~I~~~l~~Ie~~ls~g~~~~~ql~aii~~~~~~~~~~ 354 (360)
T KOG0990|consen 284 DSELKKPKGLARQDRRAELEQRFAIVISKTPVEGHILYQLADIEERLSKGCMQKEQLKAIIKNFAAELKAL 354 (360)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 44444556788888999999888888888899999999999999999999999999999999998776544
No 7
>PRK04132 replication factor C small subunit; Provisional
Probab=99.93 E-value=3.5e-24 Score=229.63 Aligned_cols=213 Identities=43% Similarity=0.656 Sum_probs=184.5
Q ss_pred eeEeC--CCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHH
Q psy4285 309 LLFYG--PPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 386 (533)
Q Consensus 309 ~ll~G--ppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~ 386 (533)
-+..| |++.||||+|+++|+.+++.. ++..++++|+++.++.+.+++.++.+.+..+....+++|+||||+|+|+.+
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~-~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~ 645 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGEN-WRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQD 645 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhccc-ccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHH
Confidence 46778 999999999999999997753 567899999999999999999999887665543235789999999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC------------------------
Q psy4285 387 AQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD------------------------ 442 (533)
Q Consensus 387 ~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~------------------------ 442 (533)
+|++|+++||+|+.+++||++||.+..+.++|+|||..+.|.+++.+++..+|.++
T Consensus 646 AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDl 725 (846)
T PRK04132 646 AQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDM 725 (846)
T ss_pred HHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999999999999999999888754
Q ss_pred ------------------------------HHHHHHHHHH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q psy4285 443 ------------------------------DISFFNIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEI 483 (533)
Q Consensus 443 ------------------------------~~~~~~ll~~---------~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~ 483 (533)
+.++.+++.. +..+.++....|+++.+++..++..+...++
T Consensus 726 R~AIn~Lq~~~~~~~~It~~~V~~~~~~~~~~~I~~il~~~l~~~~~~ar~~l~ell~~~G~~~~~iL~~l~~~l~~~~i 805 (846)
T PRK04132 726 RRAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHREVFNLPI 805 (846)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHhCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 2233333332 3345555456899999999999999988788
Q ss_pred ChhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q psy4285 484 PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522 (533)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~~~~~~~~ 522 (533)
++..+..++..+++++.++..|+++.+||++|+++++.+
T Consensus 806 ~~~~k~~ll~~lae~e~rl~~G~n~~iqL~a~la~~~~~ 844 (846)
T PRK04132 806 DEPKKVELADKIGEYNFRLVEGANEMIQLEALLAQFTLM 844 (846)
T ss_pred CHHHHHHHHHHHHHHhHHHHCCCCHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999754
No 8
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.92 E-value=7.1e-23 Score=210.47 Aligned_cols=234 Identities=24% Similarity=0.323 Sum_probs=182.1
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc------------------cCcceEEecCCC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ------------------FNAMVLELNASD 347 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~------------------~~~~~~~~~~~~ 347 (533)
..||+.+...|..++..++.+| +||+||||+|||++|+++++.+.|... ....++++++++
T Consensus 16 iiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas 95 (535)
T PRK08451 16 LIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAAS 95 (535)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecccc
Confidence 4678889999999999999999 599999999999999999999987542 123467777776
Q ss_pred CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeee
Q psy4285 348 DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRF 427 (533)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~ 427 (533)
..+.+.+++.+......+ ..++++|+||||+|+|+.+++++|++.||+++++++||++|+.+..+.++|+|||..+.|
T Consensus 96 ~~gId~IRelie~~~~~P--~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F 173 (535)
T PRK08451 96 NRGIDDIRELIEQTKYKP--SMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRF 173 (535)
T ss_pred ccCHHHHHHHHHHHhhCc--ccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEc
Confidence 677888888876543222 135789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhhcC---------HH----------------------------------------------HHHHHHHH
Q psy4285 428 GPLDSSLIMSRLDYD---------DI----------------------------------------------SFFNIIIW 452 (533)
Q Consensus 428 ~~~~~~~~~~~l~~~---------~~----------------------------------------------~~~~ll~~ 452 (533)
.+++.+++..++.++ ++ .+.++++.
T Consensus 174 ~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~~~It~~~V~~~lg~~~~~~I~~li~a 253 (535)
T PRK08451 174 KQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLGLLDPSKLEDFFQA 253 (535)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999865 11 11111111
Q ss_pred -----H-HHHHHHHHhcCCCHHHHHHHHHHHHHhc------CCChhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q psy4285 453 -----Y-IKIQEIKIEKGLALTDILTEISLLVHRL------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 520 (533)
Q Consensus 453 -----~-~~l~~l~~~~~~~~~di~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~~~~~~ 520 (533)
. ..+..+....|++..+++..+...++.. ........+++..+.++...+..|.++.++++.++.++.
T Consensus 254 i~~~d~~~a~~~l~~L~g~~~~~~l~~l~~~l~~~~~~~~~~~~l~~l~r~~riL~~~k~~l~~g~~~~i~l~~~~~~~~ 333 (535)
T PRK08451 254 ILNQDKEKLFELLKELEDYEAEMVLDEMMLFLKEKFLSKDSEFSILLYERFFRILSSAKSLLKEGADDGFVLLLMLFKMK 333 (535)
T ss_pred HHhcCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 0 1111111224677777777777776632 123344566778899999999999999999999999888
Q ss_pred HH
Q psy4285 521 SA 522 (533)
Q Consensus 521 ~~ 522 (533)
..
T Consensus 334 ~~ 335 (535)
T PRK08451 334 EA 335 (535)
T ss_pred Hh
Confidence 73
No 9
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.91 E-value=1.1e-22 Score=211.75 Aligned_cols=154 Identities=25% Similarity=0.392 Sum_probs=134.2
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------------CcceEEecCCC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------------NAMVLELNASD 347 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------------~~~~~~~~~~~ 347 (533)
+.||+++++.|..++..++.+| +||+||+||||||+++.+++.+.|.... ...++++++.+
T Consensus 18 VIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas 97 (830)
T PRK07003 18 LVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAAS 97 (830)
T ss_pred HcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccc
Confidence 3589999999999999999888 6999999999999999999999875311 12467888877
Q ss_pred CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeee
Q psy4285 348 DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRF 427 (533)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~ 427 (533)
.++.+.+++++........ .++++|+||||+|+|+...+|+|+++||+++.+++||++||...+++++|+|||..+.|
T Consensus 98 ~rgVDdIReLIe~a~~~P~--~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~F 175 (830)
T PRK07003 98 NRGVDEMAALLERAVYAPV--DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNL 175 (830)
T ss_pred cccHHHHHHHHHHHHhccc--cCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEec
Confidence 7888888888776543322 35789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhhcC
Q psy4285 428 GPLDSSLIMSRLDYD 442 (533)
Q Consensus 428 ~~~~~~~~~~~l~~~ 442 (533)
.+++.+++.++|.++
T Consensus 176 k~Ls~eeIv~~L~~I 190 (830)
T PRK07003 176 KQMPAGHIVSHLERI 190 (830)
T ss_pred CCcCHHHHHHHHHHH
Confidence 999999999998876
No 10
>KOG2035|consensus
Probab=99.91 E-value=1.9e-24 Score=195.90 Aligned_cols=166 Identities=25% Similarity=0.408 Sum_probs=133.1
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+|++++|+|++||+.++|++||||||..+|++.|+++|+...|.+++++|++.++++.+..|++.|+||+|+|+-+||
T Consensus 151 MEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE 230 (351)
T KOG2035|consen 151 MEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLE 230 (351)
T ss_pred HHHHhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhhccccc------------h-------hHHHHHhchH---HH-Hh----hc--CCChhhH
Q psy4285 81 SAATAHADEVNEDTIFTLLVSRVEKYR------------P-------STLDELVSHQ---DI-IS----TI--EIPESML 131 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~~ek~~------------~-------~~l~~lls~~---~~-l~----~l--~~~~~~~ 131 (533)
.+...+. ..+.+. ..+..+.|+.|. | ..+|++++++ .+ ++ .+ +.+...+
T Consensus 231 ~~~~~n~-~~~a~~-~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~~~d~~~k 308 (351)
T KOG2035|consen 231 AVRVNNE-PFTANS-QVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLLKCDTQLK 308 (351)
T ss_pred HHHhccc-cccccC-CCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCchhH
Confidence 9988533 333321 112223333332 2 3466666554 22 11 11 3444556
Q ss_pred HHHHhhccCccccccCCCChhhHHHHHHHHHhccccc
Q psy4285 132 VDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDK 168 (533)
Q Consensus 132 ~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~ 168 (533)
..++...+.+++|+.-|.+.++|+++|++.||+.+.+
T Consensus 309 ~~~~~~Aa~yEhRl~lG~KaIfHLEaFVA~fM~iy~~ 345 (351)
T KOG2035|consen 309 LEVIQHAAKYEHRLRLGQKAIFHLEAFVAKFMCIYKK 345 (351)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHHH
Confidence 7778888999999999999999999999999987653
No 11
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.91 E-value=8.9e-23 Score=205.40 Aligned_cols=154 Identities=26% Similarity=0.405 Sum_probs=132.2
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc------------------cCcceEEecCCC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ------------------FNAMVLELNASD 347 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~------------------~~~~~~~~~~~~ 347 (533)
+.||+.+...|..++..++.+| +||+|||||||||+|+.+|+.+.|... ....++++++..
T Consensus 20 vVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas 99 (484)
T PRK14956 20 VIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAAS 99 (484)
T ss_pred HhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhh
Confidence 3588889999999999999888 799999999999999999999987531 112466777766
Q ss_pred CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeee
Q psy4285 348 DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRF 427 (533)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~ 427 (533)
..+.+.+++......... ..++++|+||||+|+|+.+++++|++.||+++.++.||++|+.+..++++|+|||..+.|
T Consensus 100 ~~gVd~IReL~e~l~~~p--~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f 177 (484)
T PRK14956 100 NRGIENIRELRDNVKFAP--MGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIF 177 (484)
T ss_pred cccHHHHHHHHHHHHhhh--hcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeee
Confidence 677888887766544322 135789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhhcC
Q psy4285 428 GPLDSSLIMSRLDYD 442 (533)
Q Consensus 428 ~~~~~~~~~~~l~~~ 442 (533)
.+++.+++.+++.++
T Consensus 178 ~~ls~~~i~~~L~~i 192 (484)
T PRK14956 178 KKVPLSVLQDYSEKL 192 (484)
T ss_pred cCCCHHHHHHHHHHH
Confidence 999999999999887
No 12
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.91 E-value=3.8e-22 Score=198.92 Aligned_cols=234 Identities=42% Similarity=0.713 Sum_probs=191.7
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccC
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTM 367 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (533)
.+++++...+..+++.+..++++|+||||||||++++++++.+.+.. +...++.++.++..+...+++.+..+....+.
T Consensus 20 ~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (319)
T PRK00440 20 VGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGIDVIRNKIKEFARTAPV 98 (319)
T ss_pred cCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchHHHHHHHHHHHhcCCC
Confidence 36777888888888888888899999999999999999999987654 24456777777766666666666666655544
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC-----
Q psy4285 368 HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD----- 442 (533)
Q Consensus 368 ~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~----- 442 (533)
.....++++|||+|.++.+.++.|++.++.++.++.+|+++|....+.+++.+||..+.|.+++++++..++.++
T Consensus 99 ~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~ 178 (319)
T PRK00440 99 GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEG 178 (319)
T ss_pred CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcC
Confidence 334678999999999999999999999999888999999999999999999999999999999999999988865
Q ss_pred -------------------------------------------------HHHHHHHHHH---------HHHHHHHHHhcC
Q psy4285 443 -------------------------------------------------DISFFNIIIW---------YIKIQEIKIEKG 464 (533)
Q Consensus 443 -------------------------------------------------~~~~~~ll~~---------~~~l~~l~~~~~ 464 (533)
+.++.++++. ...+..+....|
T Consensus 179 ~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~it~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~a~~~l~~ll~~~g 258 (319)
T PRK00440 179 IEITDDALEAIYYVSEGDMRKAINALQAAAATGKEVTEEAVYKITGTARPEEIREMIELALNGDFTEAREKLRDLMIDYG 258 (319)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Confidence 1222222221 444455444579
Q ss_pred CCHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q psy4285 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522 (533)
Q Consensus 465 ~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~~~~~~~~ 522 (533)
+++.+++..+...+....++.....+++..+.++++++..|.++.++++.|+++++.+
T Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~d~~~k~g~~~~~~le~~i~~~~~~ 316 (319)
T PRK00440 259 LSGEDIIKQIHREVWSLDIPEELKVELIDAIGEADFRITEGANERIQLEALLAKLALL 316 (319)
T ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 9999999998877666678888889999999999999999999999999999999875
No 13
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.90 E-value=1.3e-22 Score=208.67 Aligned_cols=154 Identities=26% Similarity=0.392 Sum_probs=134.7
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc-----------------------cCcceEE
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ-----------------------FNAMVLE 342 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~-----------------------~~~~~~~ 342 (533)
+.||+++.+.|..++..++.+| +||+||+||||||+|+.+++.+.|... ....+++
T Consensus 18 VIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviE 97 (700)
T PRK12323 18 LVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIE 97 (700)
T ss_pred HcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceE
Confidence 4689999999999999999999 699999999999999999999998320 0124677
Q ss_pred ecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccc
Q psy4285 343 LNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRC 422 (533)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~ 422 (533)
+++.+..+.+.+++++........ .++++|+||||+|+|+...+|+|+++||+++.++.||++||.+.+++++|+|||
T Consensus 98 IdAas~~gVDdIReLie~~~~~P~--~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRC 175 (700)
T PRK12323 98 MDAASNRGVDEMAQLLDKAVYAPT--AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC 175 (700)
T ss_pred ecccccCCHHHHHHHHHHHHhchh--cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHH
Confidence 888777888899998876544332 367899999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCHHHHHHHhhcC
Q psy4285 423 TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 423 ~~i~~~~~~~~~~~~~l~~~ 442 (533)
..+.|.+++.+++.++|.++
T Consensus 176 q~f~f~~ls~eei~~~L~~I 195 (700)
T PRK12323 176 LQFNLKQMPPGHIVSHLDAI 195 (700)
T ss_pred HhcccCCCChHHHHHHHHHH
Confidence 99999999999999998865
No 14
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.90 E-value=3.3e-22 Score=212.16 Aligned_cols=233 Identities=17% Similarity=0.242 Sum_probs=175.2
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------------CcceEEecCCC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------------NAMVLELNASD 347 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------------~~~~~~~~~~~ 347 (533)
+.||+.++..|+.++..++.+| +||+|||||||||+|+.+|+.+.|.... ...++++++.+
T Consensus 18 IIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas 97 (944)
T PRK14949 18 MVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAAS 97 (944)
T ss_pred hcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecccc
Confidence 3589999999999999999999 5999999999999999999999885311 12245666665
Q ss_pred CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeee
Q psy4285 348 DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRF 427 (533)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~ 427 (533)
..+.+.+|+++..+.... ..++++|+||||+|+|+.+++++|+++||+++.+++||++|+.+.++.++|+|||..+.|
T Consensus 98 ~~kVDdIReLie~v~~~P--~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~f 175 (944)
T PRK14949 98 RTKVDDTRELLDNVQYRP--SRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNL 175 (944)
T ss_pred ccCHHHHHHHHHHHHhhh--hcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeC
Confidence 567788888876654332 236789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhhcC-----------------------HHHHHHHH--------------------------------HH
Q psy4285 428 GPLDSSLIMSRLDYD-----------------------DISFFNII--------------------------------IW 452 (533)
Q Consensus 428 ~~~~~~~~~~~l~~~-----------------------~~~~~~ll--------------------------------~~ 452 (533)
.+++.+++..+|.++ +.++..++ +.
T Consensus 176 kpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~~~It~~~V~~llG~iD~~~V~~llks 255 (944)
T PRK14949 176 KSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQTMLGSIDEQHVIALLKA 255 (944)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999884 12111111 11
Q ss_pred ---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CC---------------------ChhHHHHHHHHHHHHH
Q psy4285 453 ---------YIKIQEIKIEKGLALTDILTEISLLVHRL---EI---------------------PESMLVDLVLKMSDIE 499 (533)
Q Consensus 453 ---------~~~l~~l~~~~~~~~~di~~~~~~~~~~~---~~---------------------~~~~~~~~~~~~~~~~ 499 (533)
...+..+ ...|..+.+++..+...++.. .. +.+....+++.+....
T Consensus 256 I~~~D~~aaL~~l~~L-l~~G~D~~~ILr~Ll~~lRDill~k~~~~~~~l~i~~e~i~~~a~~~s~~~L~~~ie~l~~a~ 334 (944)
T PRK14949 256 LTDADIGVLMQTCAQV-LAFGADAQEVLRSLLELLHQITLTQFAPAAAQQSLYSEQIRAFAEQLSPEQVQLYYQILLTGR 334 (944)
T ss_pred HHcCCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhccchhhccchHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2222222 345788888877777665432 11 1111223455666777
Q ss_pred HHHhCCCChHHHHHHHHHHHHHH
Q psy4285 500 YRLAAGTSEKIQLSALIAAFNSA 522 (533)
Q Consensus 500 ~~l~~g~~~~~~l~~~~~~~~~~ 522 (533)
.+|....+.++.++-++.++...
T Consensus 335 ~~L~~n~n~rl~lE~~LLrl~~~ 357 (944)
T PRK14949 335 KDLPHAPDPKSGLEMALLRAVAF 357 (944)
T ss_pred HHHhhCCChHHHHHHHHHHHHHc
Confidence 78888888888888887777643
No 15
>KOG0733|consensus
Probab=99.90 E-value=3.7e-22 Score=198.77 Aligned_cols=151 Identities=23% Similarity=0.223 Sum_probs=109.7
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
..+|++||||||||.+|+++|++. +..|+.+.+++.. +...+|..+... . ...++|+|+||+
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEa------g~NFisVKGPELlNkYVGESErAVR~vFqRA---R---~saPCVIFFDEi 613 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEA------GANFISVKGPELLNKYVGESERAVRQVFQRA---R---ASAPCVIFFDEI 613 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhc------cCceEeecCHHHHHHHhhhHHHHHHHHHHHh---h---cCCCeEEEecch
Confidence 349999999999999999999998 8889999887643 333444443222 1 246899999999
Q ss_pred CCCCH-----------HHHHHHHHHHHh--cCCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcC--
Q psy4285 381 DAMTN-----------DAQNALRRIIEK--FTTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYD-- 442 (533)
Q Consensus 381 d~l~~-----------~~~~~Ll~~le~--~~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~-- 442 (533)
|.|.+ ...|.|+.-|+. ...++.+|.+||+|+.+||++++ |++ .+++..|+.++..++|+.+
T Consensus 614 DaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 614 DALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred hhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 99954 345667777763 34678899999999999999999 996 5555677888888888776
Q ss_pred --------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy4285 443 --------DISFFNIIIWYIKIQEIKIEKGLALTDILTEISL 476 (533)
Q Consensus 443 --------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~ 476 (533)
.-++.++.. .....||++.|+.--+.+
T Consensus 694 n~k~pl~~dVdl~eia~-------~~~c~gftGADLaaLvre 728 (802)
T KOG0733|consen 694 NTKPPLSSDVDLDEIAR-------NTKCEGFTGADLAALVRE 728 (802)
T ss_pred cCCCCCCcccCHHHHhh-------cccccCCchhhHHHHHHH
Confidence 223444444 112348999887654443
No 16
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.89 E-value=1e-21 Score=205.97 Aligned_cols=154 Identities=23% Similarity=0.361 Sum_probs=132.3
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------------CcceEEecCCC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------------NAMVLELNASD 347 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------------~~~~~~~~~~~ 347 (533)
+.||+.+...|...+..++.+| +||+||+|+||||+|+.+|+.+.|.... ...++++++.+
T Consensus 18 ivGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas 97 (647)
T PRK07994 18 VVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAAS 97 (647)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccc
Confidence 3589999999999999999999 6999999999999999999999885321 11356677765
Q ss_pred CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeee
Q psy4285 348 DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRF 427 (533)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~ 427 (533)
..+.+.+++++..+..... .++++|+||||+|+|+...+|+|+++||+++.+++||++|+.+..+.++|+|||..+.|
T Consensus 98 ~~~VddiR~li~~~~~~p~--~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f 175 (647)
T PRK07994 98 RTKVEDTRELLDNVQYAPA--RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 (647)
T ss_pred cCCHHHHHHHHHHHHhhhh--cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeC
Confidence 5677888888766543322 36789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhhcC
Q psy4285 428 GPLDSSLIMSRLDYD 442 (533)
Q Consensus 428 ~~~~~~~~~~~l~~~ 442 (533)
.+++.+++..+|.++
T Consensus 176 ~~Ls~~ei~~~L~~i 190 (647)
T PRK07994 176 KALDVEQIRQQLEHI 190 (647)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999998764
No 17
>KOG0730|consensus
Probab=99.89 E-value=1.3e-22 Score=204.94 Aligned_cols=307 Identities=20% Similarity=0.225 Sum_probs=198.2
Q ss_pred CccccccCCCChhhHHHHHHHHHhcccccceeeeecCCcccchhhhH-HH--HhhhhhcccccCCCceEEEEcCccccCH
Q psy4285 140 DIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVR-DQ--IFQFASTKTMHKSSYKLIILDEADAMTN 216 (533)
Q Consensus 140 ~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~~~~e~nasd~~g~~~~~-d~--i~~~a~~~~l~~~~~~~iilDE~d~l~~ 216 (533)
....+++||+||+..+.+++.+.. ..+..+|++.+.+.--+. +. -+.|+...... .|.++++||+|.++.
T Consensus 220 g~Ll~gppg~Gkt~l~~aVa~e~~-----a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~--~psii~IdEld~l~p 292 (693)
T KOG0730|consen 220 GLLLYGPPGTGKTFLVRAVANEYG-----AFLFLINGPELISKFPGETESNLRKAFAEALKFQ--VPSIIFIDELDALCP 292 (693)
T ss_pred CccccCCCCCChHHHHHHHHHHhC-----ceeEecccHHHHHhcccchHHHHHHHHHHHhccC--CCeeEeHHhHhhhCC
Confidence 355788999999999999998887 578888888776665555 33 33444444322 277999999998873
Q ss_pred -----HH-----HH-----------------------------HHHc--------------------------cCCCC-h
Q psy4285 217 -----DA-----QN-----------------------------ALRR--------------------------KLPVT-P 230 (533)
Q Consensus 217 -----~a-----~~-----------------------------~LRr--------------------------~~~~~-~ 230 (533)
+. .. .+|| .|+.. .
T Consensus 293 ~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~ 372 (693)
T KOG0730|consen 293 KREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSD 372 (693)
T ss_pred cccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcch
Confidence 01 00 4563 13444 3
Q ss_pred hHHHHHHHhccCchHHhhcHHHHHHhhcCCCC-----------------------CccccccccCCCC--HHHHHHHHHH
Q psy4285 231 DGKKAIIDLSDGDMRKVLNILQSAATAHADEV-----------------------NEDTVYNSVGYPT--KTEITNILRW 285 (533)
Q Consensus 231 ~~l~~l~~~s~~di~~~L~~L~~~~~~~~~~~-----------------------~~~~~~~~~~~~~--~~~~~~~l~~ 285 (533)
..+..++..+.|.+-..+..|...+....... .+..-|.+.|... +..+...+.|
T Consensus 373 ~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~ 452 (693)
T KOG0730|consen 373 VDLEDIAVSTHGYVGADLAALCREASLQATRRTLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEW 452 (693)
T ss_pred hhHHHHHHHccchhHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhh
Confidence 56778888888888777777666554321111 1111234444321 1122222223
Q ss_pred HhhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCC------CCchhHHHHHHH
Q psy4285 286 LLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD------DRGIGIVRDQIF 359 (533)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 359 (533)
..... +.+.++- -..+..+|||||||||||++|+++|++. +..++.+.+++ +.++..+++.+.
T Consensus 453 p~~~p----e~F~r~G-i~ppkGVLlyGPPGC~KT~lAkalAne~------~~nFlsvkgpEL~sk~vGeSEr~ir~iF~ 521 (693)
T KOG0730|consen 453 PLKHP----EKFARFG-ISPPKGVLLYGPPGCGKTLLAKALANEA------GMNFLSVKGPELFSKYVGESERAIREVFR 521 (693)
T ss_pred hhhch----HHHHHhc-CCCCceEEEECCCCcchHHHHHHHhhhh------cCCeeeccCHHHHHHhcCchHHHHHHHHH
Confidence 22211 1111111 0122349999999999999999999998 67788887765 345566766655
Q ss_pred HHHhcccCCCCCcEEEEEeCCCCCCHHH-----------HHHHHHHHHh--cCCCcEEEEEeCCCCCCChhhhc--ccee
Q psy4285 360 QFASTKTMHKSSYKLIILDEADAMTNDA-----------QNALRRIIEK--FTTNVRFCIICNYLSKIPPAIQS--RCTR 424 (533)
Q Consensus 360 ~~~~~~~~~~~~~~vliiDE~d~l~~~~-----------~~~Ll~~le~--~~~~~~~I~~~n~~~~l~~~l~s--R~~~ 424 (533)
...+ ..++|+|+||+|.+..+. .+.|++-|+. ..+++.+|.+||+++.+|++++| |++.
T Consensus 522 kAR~------~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~ 595 (693)
T KOG0730|consen 522 KARQ------VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDR 595 (693)
T ss_pred HHhh------cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccce
Confidence 4433 345899999999986543 3556666653 34689999999999999999999 9964
Q ss_pred -eeecCCCHHHHHHHhhcC-------HH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy4285 425 -FRFGPLDSSLIMSRLDYD-------DI-SFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVH 479 (533)
Q Consensus 425 -i~~~~~~~~~~~~~l~~~-------~~-~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~ 479 (533)
+.+++|+.+...++++.. +. ++.++.+ .+.|||+.|+..-+.++.+
T Consensus 596 iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~---------~T~g~SGAel~~lCq~A~~ 650 (693)
T KOG0730|consen 596 IIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ---------ATEGYSGAEIVAVCQEAAL 650 (693)
T ss_pred eEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH---------HhccCChHHHHHHHHHHHH
Confidence 555556655566666554 22 5566666 8899999999888777653
No 18
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.89 E-value=4.2e-21 Score=198.51 Aligned_cols=219 Identities=26% Similarity=0.312 Sum_probs=175.2
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc-----------------cCcceEEecCCCC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ-----------------FNAMVLELNASDD 348 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~-----------------~~~~~~~~~~~~~ 348 (533)
+.||+.+...|..++..++.+| +||+|||||||||+|+++|+.+.|... ....++++++++.
T Consensus 16 vvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~ 95 (504)
T PRK14963 16 VVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASN 95 (504)
T ss_pred hcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEeccccc
Confidence 3688889999999999999999 499999999999999999999987431 2234777887766
Q ss_pred CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeec
Q psy4285 349 RGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFG 428 (533)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~ 428 (533)
.+.+.+++....... .+. .+.++|+||||+|.++...+++|++.+++++.++.+|++++.+..+.+++.|||..+.|.
T Consensus 96 ~~vd~iR~l~~~~~~-~p~-~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~ 173 (504)
T PRK14963 96 NSVEDVRDLREKVLL-APL-RGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFR 173 (504)
T ss_pred CCHHHHHHHHHHHhh-ccc-cCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEec
Confidence 777788876544433 222 357899999999999999999999999999899999999999999999999999999999
Q ss_pred CCCHHHHHHHhhcC------------------------------------------------------HHHHHHHHHH--
Q psy4285 429 PLDSSLIMSRLDYD------------------------------------------------------DISFFNIIIW-- 452 (533)
Q Consensus 429 ~~~~~~~~~~l~~~------------------------------------------------------~~~~~~ll~~-- 452 (533)
+++.+++.+++.++ +.++.++++.
T Consensus 174 ~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al~ 253 (504)
T PRK14963 174 RLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAALA 253 (504)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 99999999999875 1122222222
Q ss_pred -------HHHHHHHHHhcCCCHHHHHHHHHHHHH-------------hcCCChhHHHHHHHHHHHHHHHHhCCCCh
Q psy4285 453 -------YIKIQEIKIEKGLALTDILTEISLLVH-------------RLEIPESMLVDLVLKMSDIEYRLAAGTSE 508 (533)
Q Consensus 453 -------~~~l~~l~~~~~~~~~di~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 508 (533)
...+.++ ...|.++.+++..+.+.++ ..++++......++.+++.++++..|++.
T Consensus 254 ~~d~~~Al~~l~~L-l~~G~~~~~Il~~L~~~~r~ll~~k~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 328 (504)
T PRK14963 254 QGDAAEALSGAAQL-YRDGFAARTLVEGLLEAFRAALYAELGLGGGPRLEGAEPRLLAAMTALDEQMERFARRSDA 328 (504)
T ss_pred cCCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhccCcccccccCcHHHHHHHHHHHHHHHHHHhccch
Confidence 3344444 4468999999999888877 34556777888999999999999999863
No 19
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=4.8e-21 Score=200.02 Aligned_cols=153 Identities=25% Similarity=0.338 Sum_probs=132.3
Q ss_pred hhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc--------------------cCcceEEecCC
Q psy4285 288 NESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ--------------------FNAMVLELNAS 346 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~--------------------~~~~~~~~~~~ 346 (533)
.||+.+.+.|..++..++.+| +||+||+||||||+|+.+|+.+.|... ....+++++++
T Consensus 16 vGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaa 95 (584)
T PRK14952 16 VGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAA 95 (584)
T ss_pred cCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccc
Confidence 589999999999999999999 699999999999999999999987431 12346677777
Q ss_pred CCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeee
Q psy4285 347 DDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFR 426 (533)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~ 426 (533)
...+.+.++++........ ..+.++|+||||+|+|+..++|+|++.||+++.++.||++|+.+.++.++|+|||..+.
T Consensus 96 s~~gvd~iRel~~~~~~~P--~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~ 173 (584)
T PRK14952 96 SHGGVDDTRELRDRAFYAP--AQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYP 173 (584)
T ss_pred cccCHHHHHHHHHHHHhhh--hcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEE
Confidence 6678888888765543322 13678999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHhhcC
Q psy4285 427 FGPLDSSLIMSRLDYD 442 (533)
Q Consensus 427 ~~~~~~~~~~~~l~~~ 442 (533)
|.+++.+++.++|.++
T Consensus 174 F~~l~~~~i~~~L~~i 189 (584)
T PRK14952 174 FRLLPPRTMRALIARI 189 (584)
T ss_pred eeCCCHHHHHHHHHHH
Confidence 9999999999999775
No 20
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.88 E-value=2.5e-22 Score=192.33 Aligned_cols=214 Identities=24% Similarity=0.272 Sum_probs=160.5
Q ss_pred hhchhhh---hhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhc
Q psy4285 288 NESMDLC---YKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364 (533)
Q Consensus 288 ~~~~~~~---~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (533)
.||++++ .-+.++++.+..++++|||||||||||+|+.||... +..|..+++.. .+.+.+++.+....+.
T Consensus 27 vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~------~~~f~~~sAv~-~gvkdlr~i~e~a~~~ 99 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT------NAAFEALSAVT-SGVKDLREIIEEARKN 99 (436)
T ss_pred cChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh------CCceEEecccc-ccHHHHHHHHHHHHHH
Confidence 4566555 357788899999999999999999999999999987 77888998877 5777788877766444
Q ss_pred ccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEe--CCCCCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 365 KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC--NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 365 ~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~--n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
.. .+...||||||+++++...|..|+..+|. ..+.+|.+| |+...+.++|+|||.++.|.|++.+++...+.+.
T Consensus 100 ~~--~gr~tiLflDEIHRfnK~QQD~lLp~vE~--G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 100 RL--LGRRTILFLDEIHRFNKAQQDALLPHVEN--GTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred Hh--cCCceEEEEehhhhcChhhhhhhhhhhcC--CeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHH
Confidence 33 24678999999999999999999999985 335666655 7777999999999999999999999999999983
Q ss_pred ---------------------------HHHHHHHHHH---------------HHHHHHHH-------HhcCCCHHHHHHH
Q psy4285 443 ---------------------------DISFFNIIIW---------------YIKIQEIK-------IEKGLALTDILTE 473 (533)
Q Consensus 443 ---------------------------~~~~~~ll~~---------------~~~l~~l~-------~~~~~~~~di~~~ 473 (533)
.+|.+..++. .+.+.++. ...|-.++|+++.
T Consensus 176 ~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA 255 (436)
T COG2256 176 LLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISA 255 (436)
T ss_pred HhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHH
Confidence 2334433333 11222211 2345677899999
Q ss_pred HHHHHHhcCCChhHHHHHHHHH-------HHHHHHHhCCCChHHHHHH
Q psy4285 474 ISLLVHRLEIPESMLVDLVLKM-------SDIEYRLAAGTSEKIQLSA 514 (533)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~g~~~~~~l~~ 514 (533)
+++.++.++. +...+++.++ .++.+||..-+++.+++++
T Consensus 256 ~hKSvRGSD~--dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAd 301 (436)
T COG2256 256 LHKSVRGSDP--DAALYYLARMIEAGEDPLYIARRLVRIASEDIGLAD 301 (436)
T ss_pred HHHhhccCCc--CHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCC
Confidence 9999998772 2333444333 2678888888888877543
No 21
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.88 E-value=7.3e-21 Score=191.14 Aligned_cols=229 Identities=31% Similarity=0.480 Sum_probs=176.2
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC------------------
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR------------------ 349 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------------------ 349 (533)
.|++.+...+..++..+..||++|+||||||||++|+++++.+.+.. ....+..+++++..
T Consensus 18 ~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 96 (337)
T PRK12402 18 LGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP-WENNFTEFNVADFFDQGKKYLVEDPRFAHFLG 96 (337)
T ss_pred cCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-cccceEEechhhhhhcchhhhhcCcchhhhhh
Confidence 36788888888888888888999999999999999999999987653 12334555554311
Q ss_pred --------chhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhcc
Q psy4285 350 --------GIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSR 421 (533)
Q Consensus 350 --------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR 421 (533)
..+.+++.++.+....+. ....++|||||++.++.+.++.|++.++.++.++++|++++.+..+.+++++|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr 175 (337)
T PRK12402 97 TDKRIRSSKIDNFKHVLKEYASYRPL-SADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSR 175 (337)
T ss_pred hhhhhccchHHHHHHHHHHHHhcCCC-CCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCC
Confidence 112233333344333322 24568999999999999999999999998888899999998888899999999
Q ss_pred ceeeeecCCCHHHHHHHhhcC------------------------------------------HHH-------------H
Q psy4285 422 CTRFRFGPLDSSLIMSRLDYD------------------------------------------DIS-------------F 446 (533)
Q Consensus 422 ~~~i~~~~~~~~~~~~~l~~~------------------------------------------~~~-------------~ 446 (533)
|..+.|.+++.+++..++.++ .++ +
T Consensus 176 ~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~~~~~It~~~v~~~~~~~~~~~~i 255 (337)
T PRK12402 176 CLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALAAGEITMEAAYEALGDVGTDEVI 255 (337)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCCHHHH
Confidence 999999999999999998875 111 2
Q ss_pred HHHHHH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy4285 447 FNIIIW---------YIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517 (533)
Q Consensus 447 ~~ll~~---------~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~~~ 517 (533)
.++++. ...+..+....|+++.++...+...+... ++.....+++..+.++++++..|.++.++++.|++
T Consensus 256 ~~l~~ai~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~~-~~~~~l~~~~~~l~~~d~~lk~g~~~~~~le~~i~ 334 (337)
T PRK12402 256 ESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELLRVARSR-YRGDNLARLHRLAADADARLTDGANDRIQLEALLA 334 (337)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 222221 33344443457999999999988776554 78888889999999999999999999999999998
Q ss_pred HH
Q psy4285 518 AF 519 (533)
Q Consensus 518 ~~ 519 (533)
++
T Consensus 335 ~~ 336 (337)
T PRK12402 335 EL 336 (337)
T ss_pred hh
Confidence 75
No 22
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=2.3e-21 Score=200.98 Aligned_cols=154 Identities=23% Similarity=0.343 Sum_probs=134.5
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------------CcceEEecCCC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------------NAMVLELNASD 347 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------------~~~~~~~~~~~ 347 (533)
..||+.++..|..++..++.+| +||+|||||||||+|+.+|+.+.|.... ...+++++++.
T Consensus 18 ivGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas 97 (509)
T PRK14958 18 VIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAAS 97 (509)
T ss_pred hcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccc
Confidence 3589999999999999999999 7999999999999999999999885421 12377888877
Q ss_pred CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeee
Q psy4285 348 DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRF 427 (533)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~ 427 (533)
..+.+.+++.+........ .++++|+||||+|+|+.+++++|+++||++++++.||++|+.+.+++++++|||..+.|
T Consensus 98 ~~~v~~iR~l~~~~~~~p~--~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f 175 (509)
T PRK14958 98 RTKVEDTRELLDNIPYAPT--KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHL 175 (509)
T ss_pred cCCHHHHHHHHHHHhhccc--cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhc
Confidence 7888889988776544332 35789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhhcC
Q psy4285 428 GPLDSSLIMSRLDYD 442 (533)
Q Consensus 428 ~~~~~~~~~~~l~~~ 442 (533)
.+++.+++.+++.++
T Consensus 176 ~~l~~~~i~~~l~~i 190 (509)
T PRK14958 176 AQLPPLQIAAHCQHL 190 (509)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999887776
No 23
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.88 E-value=6.4e-21 Score=200.43 Aligned_cols=154 Identities=29% Similarity=0.449 Sum_probs=132.9
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc------------------cCcceEEecCCC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ------------------FNAMVLELNASD 347 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~------------------~~~~~~~~~~~~ 347 (533)
+.||+.+...|..++..++.+| +||+||+|||||++|+.+|+.+.|... ....+++++++.
T Consensus 18 viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas 97 (559)
T PRK05563 18 VVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAAS 97 (559)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccc
Confidence 3588999999999999998889 799999999999999999999987542 123567777777
Q ss_pred CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeee
Q psy4285 348 DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRF 427 (533)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~ 427 (533)
..+.+.+++........+. .+.++|+||||+|+|+..++++|++++|+++.++.||++|+.+..++++++|||..+.|
T Consensus 98 ~~~vd~ir~i~~~v~~~p~--~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f 175 (559)
T PRK05563 98 NNGVDEIRDIRDKVKYAPS--EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDF 175 (559)
T ss_pred cCCHHHHHHHHHHHhhCcc--cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEec
Confidence 7788888887766443322 36789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhhcC
Q psy4285 428 GPLDSSLIMSRLDYD 442 (533)
Q Consensus 428 ~~~~~~~~~~~l~~~ 442 (533)
.+++.+++..++..+
T Consensus 176 ~~~~~~ei~~~L~~i 190 (559)
T PRK05563 176 KRISVEDIVERLKYI 190 (559)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999764
No 24
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.88 E-value=7.2e-21 Score=196.41 Aligned_cols=154 Identities=23% Similarity=0.350 Sum_probs=132.8
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc------------------cCcceEEecCCC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ------------------FNAMVLELNASD 347 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~------------------~~~~~~~~~~~~ 347 (533)
+.||+.+.+.|..++..++.+| +||+|||||||||+|+++|+.+.|... ....++++++++
T Consensus 17 VIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs 96 (702)
T PRK14960 17 LVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAAS 96 (702)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccc
Confidence 3588999999999999999888 699999999999999999999987431 122467788877
Q ss_pred CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeee
Q psy4285 348 DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRF 427 (533)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~ 427 (533)
..+.+.+++.+........ .++++|+||||+|+|+...+++|++.||+++.++.||++|+.+..++++++|||..+.|
T Consensus 97 ~~~VddIReli~~~~y~P~--~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feF 174 (702)
T PRK14960 97 RTKVEDTRELLDNVPYAPT--QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTL 174 (702)
T ss_pred cCCHHHHHHHHHHHhhhhh--cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeec
Confidence 6788888888766543322 35789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhhcC
Q psy4285 428 GPLDSSLIMSRLDYD 442 (533)
Q Consensus 428 ~~~~~~~~~~~l~~~ 442 (533)
.+++.+++.+++.++
T Consensus 175 kpLs~eEI~k~L~~I 189 (702)
T PRK14960 175 RPLAVDEITKHLGAI 189 (702)
T ss_pred cCCCHHHHHHHHHHH
Confidence 999999999999876
No 25
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.87 E-value=1.7e-20 Score=186.56 Aligned_cols=228 Identities=22% Similarity=0.304 Sum_probs=167.1
Q ss_pred hhchhhhhhhcccccccCCCce-eEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhccc
Q psy4285 288 NESMDLCYKINRFIDENELPHL-LFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKT 366 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~-ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (533)
.++++....+..++..+..+|+ +++||||+|||++++++++.+ +..+..+++++.. .+.+++.+..+....+
T Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~------~~~~~~i~~~~~~-~~~i~~~l~~~~~~~~ 96 (316)
T PHA02544 24 ILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV------GAEVLFVNGSDCR-IDFVRNRLTRFASTVS 96 (316)
T ss_pred cCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh------CccceEeccCccc-HHHHHHHHHHHHHhhc
Confidence 5778888888888888888885 559999999999999999987 4466778877733 5556665555554432
Q ss_pred CCCCCcEEEEEeCCCCC-CHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC---
Q psy4285 367 MHKSSYKLIILDEADAM-TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD--- 442 (533)
Q Consensus 367 ~~~~~~~vliiDE~d~l-~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~--- 442 (533)
. .+.++++||||+|.+ ..+.++.|...+++++.++++|++||....++++++|||..+.|..|+.++..+++...
T Consensus 97 ~-~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~ 175 (316)
T PHA02544 97 L-TGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVR 175 (316)
T ss_pred c-cCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHH
Confidence 2 246789999999999 66778888888999989999999999999999999999999999888888765443221
Q ss_pred -------------HHHHHHHHH----------------------------------------H-----HHHHHHHHHhcC
Q psy4285 443 -------------DISFFNIII----------------------------------------W-----YIKIQEIKIEKG 464 (533)
Q Consensus 443 -------------~~~~~~ll~----------------------------------------~-----~~~l~~l~~~~~ 464 (533)
++.+..+++ + ...+......-+
T Consensus 176 ~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~~~~i~~~~l~~~~~~~~~~l~~~l~~~d~~~~~~~~~~~~ 255 (316)
T PHA02544 176 CKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYASTGKIDAGILSEVTNSDIDDVVEALKAKDFKAVRALAPNYA 255 (316)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCHHHHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 111111111 1 111111112224
Q ss_pred CCHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHh
Q psy4285 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524 (533)
Q Consensus 465 ~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~~~~~~~~~~ 524 (533)
.++.+++..+.+.+.. ..+.....++.+.++..+.++..|.++.+++++|++++|.-|+
T Consensus 256 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~le~~l~~~~~~~~ 314 (316)
T PHA02544 256 NDYASFVGKLYDELYP-QVTPPSIIRLIEIIGENNQYHGFAADQEIHLLYLLTQLMLECE 314 (316)
T ss_pred cCHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence 5555666666555544 3456677788999999999999999999999999999997653
No 26
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.87 E-value=7.7e-21 Score=200.82 Aligned_cols=154 Identities=29% Similarity=0.467 Sum_probs=132.3
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------------CcceEEecCCC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------------NAMVLELNASD 347 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------------~~~~~~~~~~~ 347 (533)
+.||+++...|..++..++.+| +||+||+|+|||++|+.+++.+.|.... ...++++++..
T Consensus 18 iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s 97 (576)
T PRK14965 18 LTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGAS 97 (576)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccC
Confidence 3588899999999999999888 6999999999999999999999885421 22366777776
Q ss_pred CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeee
Q psy4285 348 DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRF 427 (533)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~ 427 (533)
..+.+.++++........ ..+.++|+||||+|+|+..++|+|+++||+++.++.||++|+.+.++.++|+|||..+.|
T Consensus 98 ~~~v~~ir~l~~~~~~~p--~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f 175 (576)
T PRK14965 98 NTGVDDIRELRENVKYLP--SRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDF 175 (576)
T ss_pred ccCHHHHHHHHHHHHhcc--ccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhc
Confidence 677888888766554332 236789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhhcC
Q psy4285 428 GPLDSSLIMSRLDYD 442 (533)
Q Consensus 428 ~~~~~~~~~~~l~~~ 442 (533)
.+++.+++..++..+
T Consensus 176 ~~l~~~~i~~~L~~i 190 (576)
T PRK14965 176 RRIPLQKIVDRLRYI 190 (576)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999998864
No 27
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.87 E-value=1.1e-20 Score=185.87 Aligned_cols=152 Identities=20% Similarity=0.263 Sum_probs=128.9
Q ss_pred hhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc------------------cCcceEEecCC--
Q psy4285 288 NESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ------------------FNAMVLELNAS-- 346 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~------------------~~~~~~~~~~~-- 346 (533)
.|+....+.+...+.+++.+| +||+||+|+||+++|.++|+.+.|... ....+..+.+.
T Consensus 5 PWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~ 84 (334)
T PRK07993 5 PWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG 84 (334)
T ss_pred CCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc
Confidence 466777888888889999999 789999999999999999999998532 11223444332
Q ss_pred -CCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceee
Q psy4285 347 -DDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRF 425 (533)
Q Consensus 347 -~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i 425 (533)
...+.+.+|+..+.+..... .++++|+|||++|+|+.+++|+|+|+|||||.++.||++|+.++.++|+|+|||..+
T Consensus 85 ~~~I~idqiR~l~~~~~~~~~--~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~ 162 (334)
T PRK07993 85 KSSLGVDAVREVTEKLYEHAR--LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLH 162 (334)
T ss_pred cccCCHHHHHHHHHHHhhccc--cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccc
Confidence 23678899998777665543 478999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHhhc
Q psy4285 426 RFGPLDSSLIMSRLDY 441 (533)
Q Consensus 426 ~~~~~~~~~~~~~l~~ 441 (533)
.|.+++.+++...|.+
T Consensus 163 ~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 163 YLAPPPEQYALTWLSR 178 (334)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 9999999999998854
No 28
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.87 E-value=3.6e-21 Score=195.28 Aligned_cols=153 Identities=29% Similarity=0.443 Sum_probs=136.9
Q ss_pred hhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc-c-----------------CcceEEecCCCC
Q psy4285 288 NESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ-F-----------------NAMVLELNASDD 348 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~-~-----------------~~~~~~~~~~~~ 348 (533)
.||+.+...|...+..++..| .+|+||.||||||+||.+|+.+.|... . ...++++++...
T Consensus 19 vGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn 98 (515)
T COG2812 19 VGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASN 98 (515)
T ss_pred cccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhc
Confidence 689999999999999999999 899999999999999999999998752 1 133566677777
Q ss_pred CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeec
Q psy4285 349 RGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFG 428 (533)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~ 428 (533)
.+.+.+|++.......+. .++++|+||||++|++..+.|+||+++||||.++.||++|..+.+++++++|||+.+.|.
T Consensus 99 ~gVddiR~i~e~v~y~P~--~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fk 176 (515)
T COG2812 99 TGVDDIREIIEKVNYAPS--EGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFK 176 (515)
T ss_pred cChHHHHHHHHHhccCCc--cccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhcccccccc
Confidence 789999998776544433 478999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhcC
Q psy4285 429 PLDSSLIMSRLDYD 442 (533)
Q Consensus 429 ~~~~~~~~~~l~~~ 442 (533)
.++.+++...|..+
T Consensus 177 ri~~~~I~~~L~~i 190 (515)
T COG2812 177 RLDLEEIAKHLAAI 190 (515)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999998
No 29
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.87 E-value=2.9e-20 Score=186.98 Aligned_cols=153 Identities=23% Similarity=0.372 Sum_probs=126.9
Q ss_pred hhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccccC------------------cceEEecCCCC
Q psy4285 288 NESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQFN------------------AMVLELNASDD 348 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~------------------~~~~~~~~~~~ 348 (533)
.||+.+.+.+..++..++.+| ++|+||||+||||+|+++|+.+.|..... ..+.+++++..
T Consensus 19 iGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~ 98 (363)
T PRK14961 19 IGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASR 98 (363)
T ss_pred cChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEeccccc
Confidence 588999999999999888888 69999999999999999999998743211 13455555544
Q ss_pred CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeec
Q psy4285 349 RGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFG 428 (533)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~ 428 (533)
.+.+.+++.+......+ ..+.++|+||||+|+++..++++|++.+|+++.++.||++|+....+.++++|||..+.|.
T Consensus 99 ~~v~~ir~i~~~~~~~p--~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~ 176 (363)
T PRK14961 99 TKVEEMREILDNIYYSP--SKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLK 176 (363)
T ss_pred CCHHHHHHHHHHHhcCc--ccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCC
Confidence 56667777665543322 1356789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhcC
Q psy4285 429 PLDSSLIMSRLDYD 442 (533)
Q Consensus 429 ~~~~~~~~~~l~~~ 442 (533)
+++.+++.+++.++
T Consensus 177 ~l~~~el~~~L~~~ 190 (363)
T PRK14961 177 IISEEKIFNFLKYI 190 (363)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998874
No 30
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.87 E-value=2.2e-20 Score=191.57 Aligned_cols=237 Identities=23% Similarity=0.328 Sum_probs=177.4
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc-------------------cCcceEEecCC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ-------------------FNAMVLELNAS 346 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~-------------------~~~~~~~~~~~ 346 (533)
..||+.++..+..++..++.+| +||+||||+|||++|+++|+.+.|... ....++.+++.
T Consensus 19 iiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~ 98 (451)
T PRK06305 19 ILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGA 98 (451)
T ss_pred hcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeecc
Confidence 3578888889999999888888 899999999999999999999987521 11245666665
Q ss_pred CCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeee
Q psy4285 347 DDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFR 426 (533)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~ 426 (533)
...+.+.++........... .+.++|+||||+|.++...++.|++.+|+++.++.+|++||....+.++|+|||..+.
T Consensus 99 ~~~gid~ir~i~~~l~~~~~--~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~ 176 (451)
T PRK06305 99 SHRGIEDIRQINETVLFTPS--KSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMH 176 (451)
T ss_pred ccCCHHHHHHHHHHHHhhhh--cCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEe
Confidence 55667777766544332221 3578999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHhhcC---------HHHHHHHHHH---------------------------------------------
Q psy4285 427 FGPLDSSLIMSRLDYD---------DISFFNIIIW--------------------------------------------- 452 (533)
Q Consensus 427 ~~~~~~~~~~~~l~~~---------~~~~~~ll~~--------------------------------------------- 452 (533)
|.+++++++.+++..+ ++.+..++..
T Consensus 177 f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~~~It~~~V~~l~~~~~~~~vf~L~~ 256 (451)
T PRK06305 177 LKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKALGLLSQDSLYTLDE 256 (451)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHHCCCCHHHHHHHHH
Confidence 9999999999988864 1111111111
Q ss_pred ----------HHHHHHHHHhcCCCHHHHHHHHHHHHHh--------------cCCChhHHHHHHHHHHHHHHHHhCCCCh
Q psy4285 453 ----------YIKIQEIKIEKGLALTDILTEISLLVHR--------------LEIPESMLVDLVLKMSDIEYRLAAGTSE 508 (533)
Q Consensus 453 ----------~~~l~~l~~~~~~~~~di~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 508 (533)
...+..+ ...|..+..++..+...++. ..++.+...+++..+.++++++..|.+.
T Consensus 257 ai~~~d~~~al~~l~~L-~~~g~~~~~iL~~L~~~fR~ll~vk~~~~~~~~a~~~s~~~L~~ii~~l~e~d~~lk~~~~~ 335 (451)
T PRK06305 257 AITTQNYAQALEPVTDA-MNSGVAPAHFLHDLTLFFRNILLKQYNKQLSSVATKYSSEQLLEIIDFLGESAKHIQLTIFE 335 (451)
T ss_pred HHHcCCHHHHHHHHHHH-HHcCcCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 1111122 23455665554444322222 1456666678889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHh
Q psy4285 509 KIQLSALIAAFNSARDKL 526 (533)
Q Consensus 509 ~~~l~~~~~~~~~~~~~~ 526 (533)
.+.++.|+.++..+..++
T Consensus 336 k~~lE~lll~l~~~~~~~ 353 (451)
T PRK06305 336 KTFLETVIIHLIRIYQRP 353 (451)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999998876543
No 31
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.87 E-value=2.1e-20 Score=194.98 Aligned_cols=154 Identities=25% Similarity=0.386 Sum_probs=131.5
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------------CcceEEecCCC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------------NAMVLELNASD 347 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------------~~~~~~~~~~~ 347 (533)
+.||+.++..|..++..++.+| +||+||+|||||++|+.+++.+.|.... ...+++++++.
T Consensus 18 IIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs 97 (709)
T PRK08691 18 LVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAAS 97 (709)
T ss_pred HcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccc
Confidence 3688999999999999999888 7999999999999999999999876321 11346677777
Q ss_pred CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeee
Q psy4285 348 DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRF 427 (533)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~ 427 (533)
..+.+.+++.+...... +. .++++|+||||+|+|+...+++|++.||+++.++.||++|+.+.++.++++|||..+.|
T Consensus 98 ~~gVd~IRelle~a~~~-P~-~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f 175 (709)
T PRK08691 98 NTGIDNIREVLENAQYA-PT-AGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVL 175 (709)
T ss_pred cCCHHHHHHHHHHHHhh-hh-hCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhc
Confidence 77888888887653322 21 25679999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhhcC
Q psy4285 428 GPLDSSLIMSRLDYD 442 (533)
Q Consensus 428 ~~~~~~~~~~~l~~~ 442 (533)
.+++.+++.++|.++
T Consensus 176 ~~Ls~eeI~~~L~~I 190 (709)
T PRK08691 176 RNMTAQQVADHLAHV 190 (709)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999876
No 32
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.87 E-value=2.1e-20 Score=196.88 Aligned_cols=154 Identities=30% Similarity=0.484 Sum_probs=130.3
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc---------------CcceEEecCCCCCc
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF---------------NAMVLELNASDDRG 350 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~---------------~~~~~~~~~~~~~~ 350 (533)
..||+.+...|..++..++.+| +||+||+|+|||++|+++|+.+.|.... ...++++++....+
T Consensus 20 IiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~ 99 (725)
T PRK07133 20 IVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNG 99 (725)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCC
Confidence 3588999999999999999899 6999999999999999999999885321 12245555554466
Q ss_pred hhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCC
Q psy4285 351 IGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430 (533)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~ 430 (533)
.+.+++++......+. .++++|+||||+|+|+..++++|++.||+++..+.||++|+.+..++++|+|||..+.|.++
T Consensus 100 vd~IReLie~~~~~P~--~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L 177 (725)
T PRK07133 100 VDEIRELIENVKNLPT--QSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRI 177 (725)
T ss_pred HHHHHHHHHHHHhchh--cCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCC
Confidence 7778887766544332 36789999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhhcC
Q psy4285 431 DSSLIMSRLDYD 442 (533)
Q Consensus 431 ~~~~~~~~l~~~ 442 (533)
+.+++.++|..+
T Consensus 178 ~~eeI~~~L~~i 189 (725)
T PRK07133 178 SEDEIVSRLEFI 189 (725)
T ss_pred CHHHHHHHHHHH
Confidence 999999999764
No 33
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.87 E-value=2.3e-20 Score=190.45 Aligned_cols=153 Identities=24% Similarity=0.340 Sum_probs=135.4
Q ss_pred hhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc------------------cCcceEEecCCCC
Q psy4285 288 NESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ------------------FNAMVLELNASDD 348 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~------------------~~~~~~~~~~~~~ 348 (533)
.||+.+.+.|..++..++.+| +||+||||+||||+|+.+|+.+.|..+ ....++++++++.
T Consensus 16 iGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~ 95 (491)
T PRK14964 16 VGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASN 95 (491)
T ss_pred cCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccC
Confidence 588999999999999999887 999999999999999999999877532 2345788898888
Q ss_pred CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeec
Q psy4285 349 RGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFG 428 (533)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~ 428 (533)
.+.+.+++.+......+ ..+.++|+||||+|+++.+++++|++.||++++++.||++|+...++.++++|||..+.|.
T Consensus 96 ~~vddIR~Iie~~~~~P--~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~ 173 (491)
T PRK14964 96 TSVDDIKVILENSCYLP--ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQ 173 (491)
T ss_pred CCHHHHHHHHHHHHhcc--ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecc
Confidence 88999999877654433 2367899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhcC
Q psy4285 429 PLDSSLIMSRLDYD 442 (533)
Q Consensus 429 ~~~~~~~~~~l~~~ 442 (533)
+++.+++.+++.++
T Consensus 174 ~l~~~el~~~L~~i 187 (491)
T PRK14964 174 KIPTDKLVEHLVDI 187 (491)
T ss_pred cccHHHHHHHHHHH
Confidence 99999999999986
No 34
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.86 E-value=2.5e-20 Score=201.87 Aligned_cols=154 Identities=25% Similarity=0.331 Sum_probs=132.0
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc--------------------cCcceEEecC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ--------------------FNAMVLELNA 345 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~--------------------~~~~~~~~~~ 345 (533)
+.||+.+.+.|..++..++.+| +||+||+|||||++|+.|++.++|... ....++++++
T Consensus 17 iiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eida 96 (824)
T PRK07764 17 VIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDA 96 (824)
T ss_pred hcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecc
Confidence 3578999999999999999999 799999999999999999999988432 1234667777
Q ss_pred CCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceee
Q psy4285 346 SDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRF 425 (533)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i 425 (533)
....+.+.++++........ ..++++|+||||+|+|+...+|+|+++||+++.+++||++|+..+++.++|+|||..+
T Consensus 97 as~~~Vd~iR~l~~~~~~~p--~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v 174 (824)
T PRK07764 97 ASHGGVDDARELRERAFFAP--AESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHY 174 (824)
T ss_pred cccCCHHHHHHHHHHHHhch--hcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEE
Confidence 66677888888655433222 2367899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHhhcC
Q psy4285 426 RFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 426 ~~~~~~~~~~~~~l~~~ 442 (533)
.|.+++.+++.++|.++
T Consensus 175 ~F~~l~~~~l~~~L~~i 191 (824)
T PRK07764 175 PFRLVPPEVMRGYLERI 191 (824)
T ss_pred EeeCCCHHHHHHHHHHH
Confidence 99999999999998875
No 35
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=2.2e-20 Score=195.63 Aligned_cols=153 Identities=24% Similarity=0.392 Sum_probs=133.2
Q ss_pred hhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc-----------------------cCcceEEe
Q psy4285 288 NESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ-----------------------FNAMVLEL 343 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~-----------------------~~~~~~~~ 343 (533)
.||+.++..|..++..++.+| +||+||+||||||+|+.+|+.+.|... ....++++
T Consensus 19 iGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~el 98 (618)
T PRK14951 19 VGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTEL 98 (618)
T ss_pred cCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeec
Confidence 478999999999999999999 699999999999999999999988421 11246777
Q ss_pred cCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccce
Q psy4285 344 NASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCT 423 (533)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~ 423 (533)
++.+..+.+.+++.+........ .++++|+||||+|+|+...+|+|++.||+++.++.||++|+.+.+++++++|||.
T Consensus 99 daas~~~Vd~iReli~~~~~~p~--~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~ 176 (618)
T PRK14951 99 DAASNRGVDEVQQLLEQAVYKPV--QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCL 176 (618)
T ss_pred CcccccCHHHHHHHHHHHHhCcc--cCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhce
Confidence 77777788889988876543332 3678999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHHHhhcC
Q psy4285 424 RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 424 ~i~~~~~~~~~~~~~l~~~ 442 (533)
.+.|.+++.+++.++|.++
T Consensus 177 ~~~f~~Ls~eei~~~L~~i 195 (618)
T PRK14951 177 QFNLRPMAPETVLEHLTQV 195 (618)
T ss_pred eeecCCCCHHHHHHHHHHH
Confidence 9999999999999999875
No 36
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.86 E-value=3e-21 Score=170.95 Aligned_cols=141 Identities=37% Similarity=0.568 Sum_probs=109.9
Q ss_pred hchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc-----------------CcceEEecCCCC--
Q psy4285 289 ESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF-----------------NAMVLELNASDD-- 348 (533)
Q Consensus 289 ~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~-----------------~~~~~~~~~~~~-- 348 (533)
||+.+.+.|...+..++.|| +||+||+|+||+++|+++++.++|.... ...+..+.....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 67788888999999999999 7999999999999999999999986643 234555555543
Q ss_pred -CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeee
Q psy4285 349 -RGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRF 427 (533)
Q Consensus 349 -~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~ 427 (533)
.+.+.+++....+..... .++++|+||||+|.|+.+++|+|+++||+|+.+++||++|+.++.+.|+++|||..+.|
T Consensus 81 ~i~i~~ir~i~~~~~~~~~--~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~ 158 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSLSPS--EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRF 158 (162)
T ss_dssp SBSHHHHHHHHHHCTSS-T--TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE
T ss_pred hhhHHHHHHHHHHHHHHHh--cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEec
Confidence 467888877666544332 36799999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy4285 428 GPLD 431 (533)
Q Consensus 428 ~~~~ 431 (533)
.+++
T Consensus 159 ~~ls 162 (162)
T PF13177_consen 159 RPLS 162 (162)
T ss_dssp ----
T ss_pred CCCC
Confidence 8864
No 37
>KOG0989|consensus
Probab=99.86 E-value=2.8e-21 Score=178.45 Aligned_cols=162 Identities=30% Similarity=0.508 Sum_probs=126.1
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||.++.+|||||+||+.++|+++|.|||+.|+|+++.++++.++|+.||.+||+++++++++.|+..|+||+|+|+++||
T Consensus 153 mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 153 MEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred HhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhh-h-------------------hccccchhHHHH------HhchH-HHHhh-cCCChhhHH
Q psy4285 81 SAATAHADEVNEDTIFTLLV-S-------------------RVEKYRPSTLDE------LVSHQ-DIIST-IEIPESMLV 132 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~-~-------------------~~ek~~~~~l~~------lls~~-~~l~~-l~~~~~~~~ 132 (533)
+++. .++.|+...+.+.++ . ..+++...-+.. ++++. +++.. ++..+..+.
T Consensus 233 sls~-~gk~It~~~~~e~~~GvVp~~~l~~lle~a~S~d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~~g~~d~~k~ 311 (346)
T KOG0989|consen 233 SLSL-LGKRITTSLVNEELAGVVPDEKLLDLLELALSADTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDIIGLSDEQKA 311 (346)
T ss_pred Hhhc-cCcccchHHHHHHHhccCCHHHHHHHHHHHHccChHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccccchHHHH
Confidence 9998 556677554333222 1 111111111111 11211 22222 256667777
Q ss_pred HHHhhccCccccccCCCChhhHHHHHHHHHh
Q psy4285 133 DLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163 (533)
Q Consensus 133 ~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~ 163 (533)
.+..++...+.+...|++.+.++..+.....
T Consensus 312 ~~~~kl~~~~~~~~dg~~l~~~L~~L~~~~~ 342 (346)
T KOG0989|consen 312 QISLKLFTRDKRLEDGEDLELALKDLLEAEK 342 (346)
T ss_pred HHHHHHHhccchhhcchhHHHHHHHHHHHHH
Confidence 7778888899999999999999887776543
No 38
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.86 E-value=7.9e-20 Score=179.08 Aligned_cols=150 Identities=21% Similarity=0.294 Sum_probs=118.5
Q ss_pred hchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc--C-----------------cceEEecCC--
Q psy4285 289 ESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF--N-----------------AMVLELNAS-- 346 (533)
Q Consensus 289 ~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~--~-----------------~~~~~~~~~-- 346 (533)
|+......+... .++.+| +||+||+|+||+++|+.+|+.+.|.... + ..+..+.+.
T Consensus 5 W~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~ 82 (342)
T PRK06964 5 WQTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEAL 82 (342)
T ss_pred ccHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc
Confidence 444455555554 457777 8999999999999999999999986421 0 112223211
Q ss_pred ---------------------------CCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC
Q psy4285 347 ---------------------------DDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFT 399 (533)
Q Consensus 347 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~ 399 (533)
...+.+.+++......... ..++.+|+|||++|+|+.+++|+|+++||||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~--~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp 160 (342)
T PRK06964 83 AAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGT--HRGGARVVVLYPAEALNVAAANALLKTLEEPP 160 (342)
T ss_pred cccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCC--ccCCceEEEEechhhcCHHHHHHHHHHhcCCC
Confidence 1245678888766544332 24688999999999999999999999999999
Q ss_pred CCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 400 TNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 400 ~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
+++.||++|+.++.++|+|+|||..+.|.+++.+++.++|...
T Consensus 161 ~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 161 PGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999864
No 39
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.86 E-value=1.1e-19 Score=178.57 Aligned_cols=139 Identities=23% Similarity=0.320 Sum_probs=116.4
Q ss_pred ccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------------CcceEEecCC---CCCchhHHHHHH
Q psy4285 301 IDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------------NAMVLELNAS---DDRGIGIVRDQI 358 (533)
Q Consensus 301 ~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------------~~~~~~~~~~---~~~~~~~~~~~~ 358 (533)
+..++.+| +||+||+|+|||++|+.+|+.+.|.... ...+..+.+. ...+.+.+|+..
T Consensus 16 ~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~ 95 (328)
T PRK05707 16 AGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELV 95 (328)
T ss_pred HHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHH
Confidence 34477788 8999999999999999999999985321 1133444332 345788999987
Q ss_pred HHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHH
Q psy4285 359 FQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSR 438 (533)
Q Consensus 359 ~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~ 438 (533)
..+...+. .++.+|+|||++|+|+.+++|+|+++||||+.++.||++|+.+..++|+|+|||..+.|.+++.+++.++
T Consensus 96 ~~~~~~~~--~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~ 173 (328)
T PRK05707 96 SFVVQTAQ--LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQW 173 (328)
T ss_pred HHHhhccc--cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHH
Confidence 76655443 4688999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhc
Q psy4285 439 LDY 441 (533)
Q Consensus 439 l~~ 441 (533)
|..
T Consensus 174 L~~ 176 (328)
T PRK05707 174 LQQ 176 (328)
T ss_pred HHH
Confidence 875
No 40
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.85 E-value=8.8e-20 Score=177.50 Aligned_cols=153 Identities=22% Similarity=0.274 Sum_probs=128.2
Q ss_pred hhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------------CcceEEecCC--
Q psy4285 288 NESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------------NAMVLELNAS-- 346 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------------~~~~~~~~~~-- 346 (533)
.|+......+...+.+++.+| +||+||+|+||+++|+.+|+.+.|.... ...+..+.+.
T Consensus 5 PW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~ 84 (325)
T PRK06871 5 PWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDN 84 (325)
T ss_pred cchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccC
Confidence 455666777888888899999 7899999999999999999999985421 1224444332
Q ss_pred CCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeee
Q psy4285 347 DDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFR 426 (533)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~ 426 (533)
...+.+.+|+..+.....+. .++.+|+|||++|+|+..++|+|+++|||||+++.||++|+.++.++|+++|||..+.
T Consensus 85 ~~I~id~iR~l~~~~~~~~~--~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~ 162 (325)
T PRK06871 85 KDIGVDQVREINEKVSQHAQ--QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWL 162 (325)
T ss_pred CCCCHHHHHHHHHHHhhccc--cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEe
Confidence 33578889988776654443 4688999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHhhcC
Q psy4285 427 FGPLDSSLIMSRLDYD 442 (533)
Q Consensus 427 ~~~~~~~~~~~~l~~~ 442 (533)
|.+++.+++.++|...
T Consensus 163 ~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 163 IHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999888764
No 41
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.85 E-value=4.6e-20 Score=180.20 Aligned_cols=153 Identities=21% Similarity=0.290 Sum_probs=124.0
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------CcceEEecCC-------
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------NAMVLELNAS------- 346 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------~~~~~~~~~~------- 346 (533)
..||+.+...+...+..++.+| +||+||+|+||+++|.++|+.++|.... ...+..+.+.
T Consensus 6 iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~ 85 (314)
T PRK07399 6 LIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKL 85 (314)
T ss_pred hCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccc
Confidence 4688999999999999999877 8999999999999999999999886411 1112222211
Q ss_pred ----------------CCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 347 ----------------DDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 347 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
.....+.+++....+ ...+. .++++|+|||++|.|+..++|+|+++||+|+ ++.||++|+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l-~~~p~-~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 86 ITASEAEEAGLKRKAPPQIRLEQIREIKRFL-SRPPL-EAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred cchhhhhhccccccccccCcHHHHHHHHHHH-ccCcc-cCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECC
Confidence 012244666654443 33332 4689999999999999999999999999998 8899999999
Q ss_pred CCCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 411 ~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
++.+.|+|+|||..+.|.+++++++.++|.+.
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~ 194 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRL 194 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999876
No 42
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.85 E-value=1.4e-19 Score=175.88 Aligned_cols=154 Identities=24% Similarity=0.286 Sum_probs=126.7
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc---------------CcceEEe--cCCC-
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF---------------NAMVLEL--NASD- 347 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~---------------~~~~~~~--~~~~- 347 (533)
..|+......+...+..++.|| +||+||+|+||+++|.++|+.++|.... ...+..+ .+..
T Consensus 6 yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~ 85 (319)
T PRK08769 6 SPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT 85 (319)
T ss_pred cccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc
Confidence 3466777888888889999999 8999999999999999999999986421 1123333 2211
Q ss_pred ------CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhcc
Q psy4285 348 ------DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSR 421 (533)
Q Consensus 348 ------~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR 421 (533)
..+.+.+++.......... .++.+|+|||++|.|+.+++|+|+++||||+.++.||++|+.++.+.|+|+||
T Consensus 86 ~~k~~~~I~idqIR~l~~~~~~~p~--~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR 163 (319)
T PRK08769 86 GDKLRTEIVIEQVREISQKLALTPQ--YGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR 163 (319)
T ss_pred cccccccccHHHHHHHHHHHhhCcc--cCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh
Confidence 1346778877665544433 36789999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCHHHHHHHhhcC
Q psy4285 422 CTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 422 ~~~i~~~~~~~~~~~~~l~~~ 442 (533)
|..+.|.+|+.+++..+|...
T Consensus 164 Cq~i~~~~~~~~~~~~~L~~~ 184 (319)
T PRK08769 164 CQRLEFKLPPAHEALAWLLAQ 184 (319)
T ss_pred heEeeCCCcCHHHHHHHHHHc
Confidence 999999999999999999765
No 43
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.85 E-value=9.8e-20 Score=180.27 Aligned_cols=155 Identities=26% Similarity=0.355 Sum_probs=128.0
Q ss_pred HhhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------------CcceEEecCC
Q psy4285 286 LLNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------------NAMVLELNAS 346 (533)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------------~~~~~~~~~~ 346 (533)
+..+|+.+.+.+...+..++.+| +||+||+|+|||++|+.+++.+.|.... ...+..+...
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 34458899999999999999999 6999999999999999999999886411 1122233221
Q ss_pred -CCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceee
Q psy4285 347 -DDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRF 425 (533)
Q Consensus 347 -~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i 425 (533)
...+.+.+++....+...+ ..++++|+||||+|.|+.+++|+|++.||+||+++.||++|+.+.++.|+|+|||..+
T Consensus 87 ~~~i~id~ir~l~~~~~~~~--~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i 164 (329)
T PRK08058 87 GQSIKKDQIRYLKEEFSKSG--VESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVV 164 (329)
T ss_pred cccCCHHHHHHHHHHHhhCC--cccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceee
Confidence 2245667888776665443 2467899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHhhcC
Q psy4285 426 RFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 426 ~~~~~~~~~~~~~l~~~ 442 (533)
.|.+++.+++.+++...
T Consensus 165 ~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 165 EFRPLPPESLIQRLQEE 181 (329)
T ss_pred eCCCCCHHHHHHHHHHc
Confidence 99999999999888764
No 44
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=1.8e-19 Score=186.49 Aligned_cols=154 Identities=22% Similarity=0.340 Sum_probs=130.3
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------------CcceEEecCCC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------------NAMVLELNASD 347 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------------~~~~~~~~~~~ 347 (533)
..||+.+...|..++..++.+| +||+||||+||||+|+.+|+.+.|.... ...++++++..
T Consensus 18 iiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas 97 (546)
T PRK14957 18 VAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAAS 97 (546)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeeccc
Confidence 3588888889999999988888 7899999999999999999999874321 12455666655
Q ss_pred CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeee
Q psy4285 348 DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRF 427 (533)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~ 427 (533)
..+.+.+++.+..+.... ..++++|+||||+|+|+..++++|++.||+++.++.||++|+....+.++++|||..+.|
T Consensus 98 ~~gvd~ir~ii~~~~~~p--~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f 175 (546)
T PRK14957 98 RTGVEETKEILDNIQYMP--SQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHL 175 (546)
T ss_pred ccCHHHHHHHHHHHHhhh--hcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEe
Confidence 567777888776654332 236789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhhcC
Q psy4285 428 GPLDSSLIMSRLDYD 442 (533)
Q Consensus 428 ~~~~~~~~~~~l~~~ 442 (533)
.+++.+++..++.++
T Consensus 176 ~~Ls~~eI~~~L~~i 190 (546)
T PRK14957 176 KHISQADIKDQLKII 190 (546)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999888874
No 45
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.85 E-value=1.2e-19 Score=182.00 Aligned_cols=153 Identities=20% Similarity=0.318 Sum_probs=124.1
Q ss_pred hhhchhhhhhhcccccccC---------CCc-eeEeCCCCCChHHHHHHHHHHHcccccc-----------------Ccc
Q psy4285 287 LNESMDLCYKINRFIDENE---------LPH-LLFYGPPGTGKTTTILACARKLYTKAQF-----------------NAM 339 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~---------~~~-~ll~GppGtGKT~la~~la~~l~~~~~~-----------------~~~ 339 (533)
+.||+.+...|+.++..++ .+| +||+||||+|||++|+++|+.+.|.... ...
T Consensus 7 IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD 86 (394)
T PRK07940 7 LVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPD 86 (394)
T ss_pred ccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 3578888888888887765 677 8999999999999999999999886310 111
Q ss_pred eEEecCC-CCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhh
Q psy4285 340 VLELNAS-DDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418 (533)
Q Consensus 340 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l 418 (533)
+..+.+. ...+.+.+++.+......+. .++++|+||||+|.|+...+|+|+++||+++.++.||++|+.+..++|+|
T Consensus 87 ~~~i~~~~~~i~i~~iR~l~~~~~~~p~--~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTI 164 (394)
T PRK07940 87 VRVVAPEGLSIGVDEVRELVTIAARRPS--TGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTI 164 (394)
T ss_pred EEEeccccccCCHHHHHHHHHHHHhCcc--cCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHH
Confidence 2223221 23456778887766544332 36789999999999999999999999999999999999999999999999
Q ss_pred hccceeeeecCCCHHHHHHHhhc
Q psy4285 419 QSRCTRFRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 419 ~sR~~~i~~~~~~~~~~~~~l~~ 441 (533)
+|||..+.|.+|+.+++.++|.+
T Consensus 165 rSRc~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 165 RSRCRHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred HhhCeEEECCCCCHHHHHHHHHH
Confidence 99999999999999999999863
No 46
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.85 E-value=1.7e-19 Score=186.62 Aligned_cols=153 Identities=29% Similarity=0.390 Sum_probs=131.1
Q ss_pred hhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------------CcceEEecCCCC
Q psy4285 288 NESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------------NAMVLELNASDD 348 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------------~~~~~~~~~~~~ 348 (533)
.||+.+...+..++..++.+| +||+||||+|||++|+.+|+.+.|..+. ...+++++++..
T Consensus 19 IGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~ 98 (605)
T PRK05896 19 IGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASN 98 (605)
T ss_pred cCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccc
Confidence 488888999999998888888 8999999999999999999999875421 124566776666
Q ss_pred CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeec
Q psy4285 349 RGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFG 428 (533)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~ 428 (533)
.+.+.+++.+..+...+. .++++|+||||+|+|+..++++|++.||+++.++.+|++|+.+..+.++++|||..+.|.
T Consensus 99 igVd~IReIi~~~~~~P~--~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~ 176 (605)
T PRK05896 99 NGVDEIRNIIDNINYLPT--TFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFK 176 (605)
T ss_pred cCHHHHHHHHHHHHhchh--hCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccC
Confidence 778888887766554332 356899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhcC
Q psy4285 429 PLDSSLIMSRLDYD 442 (533)
Q Consensus 429 ~~~~~~~~~~l~~~ 442 (533)
+++.+++..++..+
T Consensus 177 ~Ls~~eL~~~L~~i 190 (605)
T PRK05896 177 KLNNSELQELLKSI 190 (605)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999874
No 47
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=2.9e-19 Score=183.41 Aligned_cols=154 Identities=32% Similarity=0.479 Sum_probs=128.9
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc------------------cCcceEEecCCC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ------------------FNAMVLELNASD 347 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~------------------~~~~~~~~~~~~ 347 (533)
..||+++...|..++..++.+| +||+|||||||||+|+++|+.+.|... ....++.++++.
T Consensus 16 ivGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~ 95 (472)
T PRK14962 16 VVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS 95 (472)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc
Confidence 3577888888888899888888 799999999999999999999977431 112467788876
Q ss_pred CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeee
Q psy4285 348 DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRF 427 (533)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~ 427 (533)
..+.+.+++.... ....+. .+..+|+||||+|+++.+.++.|++.+++++.++.+|++|+.+..+.++++|||..+.|
T Consensus 96 ~~gid~iR~i~~~-~~~~p~-~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f 173 (472)
T PRK14962 96 NRGIDEIRKIRDA-VGYRPM-EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEF 173 (472)
T ss_pred cCCHHHHHHHHHH-HhhChh-cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEE
Confidence 6778888765443 333322 35788999999999999999999999999999999999998888999999999999999
Q ss_pred cCCCHHHHHHHhhcC
Q psy4285 428 GPLDSSLIMSRLDYD 442 (533)
Q Consensus 428 ~~~~~~~~~~~l~~~ 442 (533)
.+++.+++..++..+
T Consensus 174 ~~l~~~el~~~L~~i 188 (472)
T PRK14962 174 RNISDELIIKRLQEV 188 (472)
T ss_pred CCccHHHHHHHHHHH
Confidence 999999999998886
No 48
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.84 E-value=3e-19 Score=187.74 Aligned_cols=154 Identities=25% Similarity=0.410 Sum_probs=132.8
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc-----------------------CcceEE
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF-----------------------NAMVLE 342 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~-----------------------~~~~~~ 342 (533)
+.||+.+++.|..++..++.+| +||+||+|+|||++|+.+|+.+.|.... ...+++
T Consensus 26 liGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e 105 (598)
T PRK09111 26 LIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLE 105 (598)
T ss_pred hcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEE
Confidence 3588999999999999999888 9999999999999999999999875311 123566
Q ss_pred ecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccc
Q psy4285 343 LNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRC 422 (533)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~ 422 (533)
+++....+.+.+++.+...... +. .+.++|+||||+|+|+...+++|++.||+++.++.||++|+...++.++++|||
T Consensus 106 ~~a~s~~gvd~IReIie~~~~~-P~-~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRc 183 (598)
T PRK09111 106 MDAASHTGVDDIREIIESVRYR-PV-SARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRC 183 (598)
T ss_pred ecccccCCHHHHHHHHHHHHhc-hh-cCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhhe
Confidence 6666667888899887654333 32 367899999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCHHHHHHHhhcC
Q psy4285 423 TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 423 ~~i~~~~~~~~~~~~~l~~~ 442 (533)
..+.|.+++.+++..++.++
T Consensus 184 q~~~f~~l~~~el~~~L~~i 203 (598)
T PRK09111 184 QRFDLRRIEADVLAAHLSRI 203 (598)
T ss_pred eEEEecCCCHHHHHHHHHHH
Confidence 99999999999999999886
No 49
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.84 E-value=3.2e-19 Score=186.79 Aligned_cols=154 Identities=27% Similarity=0.388 Sum_probs=128.3
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------------CcceEEecCCC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------------NAMVLELNASD 347 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------------~~~~~~~~~~~ 347 (533)
..||+.+...|..++..++.+| +||+||||+|||++|+++|+.+.|..+. ...++.+++..
T Consensus 18 iiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas 97 (563)
T PRK06647 18 LEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS 97 (563)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcc
Confidence 3588999999999999999998 8999999999999999999999875311 12345566554
Q ss_pred CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeee
Q psy4285 348 DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRF 427 (533)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~ 427 (533)
..+.+.+++........ + ..++++|+||||+|+|+..++++|++.+|+++.++.||++|+.+..+.++|+|||..+.|
T Consensus 98 ~~~vddIr~l~e~~~~~-p-~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f 175 (563)
T PRK06647 98 NTSVQDVRQIKEEIMFP-P-ASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNF 175 (563)
T ss_pred cCCHHHHHHHHHHHHhc-h-hcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEe
Confidence 45667777665443322 2 236789999999999999999999999999999999999999889999999999999999
Q ss_pred cCCCHHHHHHHhhcC
Q psy4285 428 GPLDSSLIMSRLDYD 442 (533)
Q Consensus 428 ~~~~~~~~~~~l~~~ 442 (533)
.+++.+++.+++.++
T Consensus 176 ~~l~~~el~~~L~~i 190 (563)
T PRK06647 176 RLLSLEKIYNMLKKV 190 (563)
T ss_pred cCCCHHHHHHHHHHH
Confidence 999999999888765
No 50
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.84 E-value=4.9e-19 Score=182.28 Aligned_cols=154 Identities=25% Similarity=0.342 Sum_probs=132.0
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc----------------------cCcceEEe
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ----------------------FNAMVLEL 343 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~----------------------~~~~~~~~ 343 (533)
..||+.++..|...+..++.+| +||+|||||||||+|+.+|+.+.|... ....++++
T Consensus 23 liGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~ei 102 (507)
T PRK06645 23 LQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEI 102 (507)
T ss_pred hcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEe
Confidence 3688888999988888888776 899999999999999999999987531 11346777
Q ss_pred cCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccce
Q psy4285 344 NASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCT 423 (533)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~ 423 (533)
++.+..+.+.+++.+...... + ..+.++|+||||+|+++...+++|++.+|+++.++.||++|+...+++++++|||.
T Consensus 103 daas~~~vd~Ir~iie~a~~~-P-~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~ 180 (507)
T PRK06645 103 DAASKTSVDDIRRIIESAEYK-P-LQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ 180 (507)
T ss_pred eccCCCCHHHHHHHHHHHHhc-c-ccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcce
Confidence 777667888898887665433 3 23678999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCHHHHHHHhhcC
Q psy4285 424 RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 424 ~i~~~~~~~~~~~~~l~~~ 442 (533)
.+.|.+++.+++.+++.++
T Consensus 181 ~~ef~~ls~~el~~~L~~i 199 (507)
T PRK06645 181 RYDLRRLSFEEIFKLLEYI 199 (507)
T ss_pred EEEccCCCHHHHHHHHHHH
Confidence 9999999999999999876
No 51
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=3.1e-19 Score=186.46 Aligned_cols=153 Identities=24% Similarity=0.391 Sum_probs=130.2
Q ss_pred hhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------------CcceEEecCCCC
Q psy4285 288 NESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------------NAMVLELNASDD 348 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------------~~~~~~~~~~~~ 348 (533)
.||+.++..|..++..++.+| +||+||||+||||+|+.+|+.+.|.... ...+++++++..
T Consensus 19 vGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~ 98 (527)
T PRK14969 19 VGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASN 98 (527)
T ss_pred cCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeecccc
Confidence 588999999999999999999 6999999999999999999999885321 113556666655
Q ss_pred CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeec
Q psy4285 349 RGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFG 428 (533)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~ 428 (533)
.+.+.+++.+...... + ..++++|+||||+|+|+.+++|+|++.||+++.++.||++|+.+..+.++++|||..+.|.
T Consensus 99 ~~vd~ir~l~~~~~~~-p-~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~ 176 (527)
T PRK14969 99 TQVDAMRELLDNAQYA-P-TRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLK 176 (527)
T ss_pred CCHHHHHHHHHHHhhC-c-ccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcC
Confidence 6778888877654332 2 2367899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhcC
Q psy4285 429 PLDSSLIMSRLDYD 442 (533)
Q Consensus 429 ~~~~~~~~~~l~~~ 442 (533)
+++.+++.+++.++
T Consensus 177 ~l~~~~i~~~L~~i 190 (527)
T PRK14969 177 QMPPPLIVSHLQHI 190 (527)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999888765
No 52
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=5.8e-19 Score=186.96 Aligned_cols=154 Identities=28% Similarity=0.414 Sum_probs=131.2
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc-------------------cCcceEEecCC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ-------------------FNAMVLELNAS 346 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~-------------------~~~~~~~~~~~ 346 (533)
+.||+.+...|..++..++.+| +||+||+|+|||++|+.+|+.+.|... ....+..+++.
T Consensus 19 viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~ 98 (614)
T PRK14971 19 VVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAA 98 (614)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEeccc
Confidence 3588899999999999999999 799999999999999999999986421 12345667776
Q ss_pred CCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeee
Q psy4285 347 DDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFR 426 (533)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~ 426 (533)
+..+.+.++..+...... + ..++++|+||||+|+|+.+++++|++.||+++.++.||++|+...++.++|+|||..+.
T Consensus 99 ~~~~vd~Ir~li~~~~~~-P-~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~ 176 (614)
T PRK14971 99 SNNSVDDIRNLIEQVRIP-P-QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFD 176 (614)
T ss_pred ccCCHHHHHHHHHHHhhC-c-ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheee
Confidence 656677888877655333 2 23678999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHhhcC
Q psy4285 427 FGPLDSSLIMSRLDYD 442 (533)
Q Consensus 427 ~~~~~~~~~~~~l~~~ 442 (533)
|.+++.+++..++..+
T Consensus 177 f~~ls~~ei~~~L~~i 192 (614)
T PRK14971 177 FNRIQVADIVNHLQYV 192 (614)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 9999999999999764
No 53
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.83 E-value=6.3e-19 Score=186.61 Aligned_cols=154 Identities=25% Similarity=0.384 Sum_probs=128.4
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc--------------------CcceEEecC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF--------------------NAMVLELNA 345 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~--------------------~~~~~~~~~ 345 (533)
..|++.+...|..++..++.+| +||+||||+|||++|+++|+.+.|.... ...++++++
T Consensus 18 liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~ 97 (620)
T PRK14948 18 LVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDA 97 (620)
T ss_pred ccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEec
Confidence 4578888888988888887655 8999999999999999999999884311 123556666
Q ss_pred CCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceee
Q psy4285 346 SDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRF 425 (533)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i 425 (533)
....+.+.+++.+...... + ..+.++|+||||+|+|+.+++++|++.||+++..+.||++|+.+..+.++|+|||..+
T Consensus 98 ~~~~~vd~IReii~~a~~~-p-~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~ 175 (620)
T PRK14948 98 ASNTGVDNIRELIERAQFA-P-VQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRF 175 (620)
T ss_pred cccCCHHHHHHHHHHHhhC-h-hcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEE
Confidence 6557778888887654332 2 2357899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHhhcC
Q psy4285 426 RFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 426 ~~~~~~~~~~~~~l~~~ 442 (533)
.|.+++.+++..++.++
T Consensus 176 ~f~~l~~~ei~~~L~~i 192 (620)
T PRK14948 176 DFRRIPLEAMVQHLSEI 192 (620)
T ss_pred EecCCCHHHHHHHHHHH
Confidence 99999999999888753
No 54
>PRK04132 replication factor C small subunit; Provisional
Probab=99.83 E-value=3.7e-20 Score=198.87 Aligned_cols=163 Identities=39% Similarity=0.686 Sum_probs=133.3
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+||++++||++||++++|+|||+|||++|+|++++.+++.++|+++|++|++.++++++..|+..|+||+|+|+|+||
T Consensus 654 lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 654 MEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred hhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhhcc-------------ccc--hhHHHHHh-----chHHHHhh-------cCCChhhHHH
Q psy4285 81 SAATAHADEVNEDTIFTLLVSRVE-------------KYR--PSTLDELV-----SHQDIIST-------IEIPESMLVD 133 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~~e-------------k~~--~~~l~~ll-----s~~~~l~~-------l~~~~~~~~~ 133 (533)
.++.. ...|+.+.+..+.+.... ++. ...+++++ +..+++.+ ..+++..+..
T Consensus 734 ~~~~~-~~~It~~~V~~~~~~~~~~~I~~il~~~l~~~~~~ar~~l~ell~~~G~~~~~iL~~l~~~l~~~~i~~~~k~~ 812 (846)
T PRK04132 734 AAAAL-DDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHREVFNLPIDEPKKVE 812 (846)
T ss_pred HHHHh-cCCCCHHHHHHHhCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 98764 346888776543321100 000 11244443 12233332 2467778888
Q ss_pred HHhhccCccccccCCCChhhHHHHHHHHHhc
Q psy4285 134 LVLKMSDIEYRLAAGTSEKIQLSALIAAFNS 164 (533)
Q Consensus 134 ~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~ 164 (533)
++..++++++++..|+++.+|+++|++.++.
T Consensus 813 ll~~lae~e~rl~~G~n~~iqL~a~la~~~~ 843 (846)
T PRK04132 813 LADKIGEYNFRLVEGANEMIQLEALLAQFTL 843 (846)
T ss_pred HHHHHHHHhHHHHCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999864
No 55
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.83 E-value=4e-19 Score=177.63 Aligned_cols=138 Identities=45% Similarity=0.685 Sum_probs=114.6
Q ss_pred ccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc------------------cCcceEEecCCCCCchhHHHHHHHHHHh
Q psy4285 303 ENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ------------------FNAMVLELNASDDRGIGIVRDQIFQFAS 363 (533)
Q Consensus 303 ~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (533)
.++.+| +||+||||+|||++|.++|+.++|... ....++++++++.+..+...+.++.+..
T Consensus 20 ~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~ 99 (325)
T COG0470 20 SGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAE 99 (325)
T ss_pred cCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHH
Confidence 557888 999999999999999999999987652 2357899999998775544444444443
Q ss_pred cccCC--CCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhh
Q psy4285 364 TKTMH--KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440 (533)
Q Consensus 364 ~~~~~--~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~ 440 (533)
..... .++.+|+||||+|.|+.+++++|++++|+++.+++||++||.+..+.++|+|||..+.|.+++.........
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCCchHHHHHHHhh
Confidence 32222 367899999999999999999999999999999999999999999999999999999999977666666655
No 56
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.83 E-value=1.2e-18 Score=169.09 Aligned_cols=153 Identities=20% Similarity=0.293 Sum_probs=127.3
Q ss_pred hhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc-----------------CcceEEecCC---
Q psy4285 288 NESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF-----------------NAMVLELNAS--- 346 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~-----------------~~~~~~~~~~--- 346 (533)
.|+......+...+..++.+| +||+||.|+||+++|+.+|+.+.|.... ...+..+.+.
T Consensus 6 PWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~ 85 (319)
T PRK06090 6 PWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEG 85 (319)
T ss_pred ccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCC
Confidence 456677778888888899999 8999999999999999999999986421 1234444432
Q ss_pred CCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeee
Q psy4285 347 DDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFR 426 (533)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~ 426 (533)
...+.+.+|+.......... .++++|+|||++|+|+..++|+|++++||||+++.||++|+.++.+.|+|+|||..+.
T Consensus 86 ~~I~vdqiR~l~~~~~~~~~--~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~ 163 (319)
T PRK06090 86 KSITVEQIRQCNRLAQESSQ--LNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWV 163 (319)
T ss_pred CcCCHHHHHHHHHHHhhCcc--cCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEe
Confidence 23567788877655443332 4678999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHhhcC
Q psy4285 427 FGPLDSSLIMSRLDYD 442 (533)
Q Consensus 427 ~~~~~~~~~~~~l~~~ 442 (533)
|.+|+++++.++|...
T Consensus 164 ~~~~~~~~~~~~L~~~ 179 (319)
T PRK06090 164 VTPPSTAQAMQWLKGQ 179 (319)
T ss_pred CCCCCHHHHHHHHHHc
Confidence 9999999999998765
No 57
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.83 E-value=6.1e-19 Score=179.35 Aligned_cols=154 Identities=23% Similarity=0.341 Sum_probs=128.1
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc--------------------------Ccc
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF--------------------------NAM 339 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~--------------------------~~~ 339 (533)
..||+.+...|..++.+++.+| +||+||||+||||+|+++|+.+.|.... ...
T Consensus 18 iiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n 97 (397)
T PRK14955 18 ITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLN 97 (397)
T ss_pred ccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCC
Confidence 3578888889999999999999 8999999999999999999999884211 112
Q ss_pred eEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhh
Q psy4285 340 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419 (533)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~ 419 (533)
+..+++.+..+.+.+++........+ ..+.++|+||||+|.++...++.|++.+|++++.+.||++++....+.++++
T Consensus 98 ~~~~~~~~~~~id~Ir~l~~~~~~~p--~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~ 175 (397)
T PRK14955 98 ISEFDAASNNSVDDIRLLRENVRYGP--QKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIA 175 (397)
T ss_pred eEeecccccCCHHHHHHHHHHHhhch--hcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHH
Confidence 44555555556777877665553332 2367899999999999999999999999999999999999988889999999
Q ss_pred ccceeeeecCCCHHHHHHHhhcC
Q psy4285 420 SRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 420 sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
+||..+.|.+++.+++.+++..+
T Consensus 176 sR~~~v~f~~l~~~ei~~~l~~~ 198 (397)
T PRK14955 176 SRCQRFNFKRIPLEEIQQQLQGI 198 (397)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHH
Confidence 99999999999999999888874
No 58
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.83 E-value=1.3e-18 Score=172.07 Aligned_cols=153 Identities=25% Similarity=0.378 Sum_probs=127.7
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc--CcceEEecCC--CCCchhHHHHHHHHH
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF--NAMVLELNAS--DDRGIGIVRDQIFQF 361 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~ 361 (533)
..||+.+.+.+...+..++.+| ++|+||+|+|||++|+.+++.+.|.... ...+..+... ...+.+.+++....+
T Consensus 6 i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~ 85 (313)
T PRK05564 6 IIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEV 85 (313)
T ss_pred ccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHH
Confidence 3478888888999999999999 6999999999999999999999886421 2234444442 234566788877655
Q ss_pred HhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhc
Q psy4285 362 ASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 362 ~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~ 441 (533)
...+ ..++++|+|||++|.|+.+++|+|++.+|++|+++.||++|+.++.+.|+++|||..+.|.+++++++..++.+
T Consensus 86 ~~~p--~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~ 163 (313)
T PRK05564 86 NKKP--YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISY 163 (313)
T ss_pred hcCc--ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHH
Confidence 4333 24689999999999999999999999999999999999999999999999999999999999999999988864
No 59
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=1.9e-18 Score=178.31 Aligned_cols=154 Identities=29% Similarity=0.396 Sum_probs=128.5
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------------CcceEEecCCC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------------NAMVLELNASD 347 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------------~~~~~~~~~~~ 347 (533)
..||+.+...+..++..++.+| +||+||||+|||++|+.+|+.+.|.... ...+++++++.
T Consensus 18 iiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas 97 (486)
T PRK14953 18 VIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAAS 97 (486)
T ss_pred ccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCcc
Confidence 3588999999999999988888 6899999999999999999999863211 12355566666
Q ss_pred CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeee
Q psy4285 348 DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRF 427 (533)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~ 427 (533)
..+.+.++....... ..+. .+.++|+||||+|+++..++++|++.+++++.++.+|++|+....++++++|||..+.|
T Consensus 98 ~~gvd~ir~I~~~~~-~~P~-~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f 175 (486)
T PRK14953 98 NRGIDDIRALRDAVS-YTPI-KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIF 175 (486)
T ss_pred CCCHHHHHHHHHHHH-hCcc-cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEc
Confidence 577777777654433 3332 36789999999999999999999999999999999999999888999999999999999
Q ss_pred cCCCHHHHHHHhhcC
Q psy4285 428 GPLDSSLIMSRLDYD 442 (533)
Q Consensus 428 ~~~~~~~~~~~l~~~ 442 (533)
.+++.+++..++.++
T Consensus 176 ~~ls~~el~~~L~~i 190 (486)
T PRK14953 176 SKPTKEQIKEYLKRI 190 (486)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999988885
No 60
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=1.3e-18 Score=180.88 Aligned_cols=153 Identities=27% Similarity=0.389 Sum_probs=128.2
Q ss_pred hhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc------------------cCcceEEecCCCC
Q psy4285 288 NESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ------------------FNAMVLELNASDD 348 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~------------------~~~~~~~~~~~~~ 348 (533)
.||+.+...|..++..++.+| +||+||||||||++|+.+|+.+.|... ....++++++...
T Consensus 19 iGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~ 98 (624)
T PRK14959 19 AGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASN 98 (624)
T ss_pred cCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccc
Confidence 478888999999999887666 889999999999999999999988521 1223667777666
Q ss_pred CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeec
Q psy4285 349 RGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFG 428 (533)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~ 428 (533)
.+.+.++.+...+.... ..+.++|+||||+|+|+...+++|++.||+++.++.||++|+.+..+.++|+|||..+.|.
T Consensus 99 ~~Id~iR~L~~~~~~~p--~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~ 176 (624)
T PRK14959 99 RGIDDAKRLKEAIGYAP--MEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFT 176 (624)
T ss_pred cCHHHHHHHHHHHHhhh--hcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccC
Confidence 67777877554443222 2357899999999999999999999999999899999999999999999999999999999
Q ss_pred CCCHHHHHHHhhcC
Q psy4285 429 PLDSSLIMSRLDYD 442 (533)
Q Consensus 429 ~~~~~~~~~~l~~~ 442 (533)
+++.+++.++|..+
T Consensus 177 pLs~~eL~~~L~~i 190 (624)
T PRK14959 177 RLSEAGLEAHLTKV 190 (624)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999864
No 61
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.82 E-value=3.5e-18 Score=162.42 Aligned_cols=224 Identities=17% Similarity=0.182 Sum_probs=151.8
Q ss_pred hhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc----------cCcceEEecCCC---CCchhHHHHHH
Q psy4285 293 LCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ----------FNAMVLELNASD---DRGIGIVRDQI 358 (533)
Q Consensus 293 ~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~----------~~~~~~~~~~~~---~~~~~~~~~~~ 358 (533)
..+.+...++.++.+| +||+||+|+||+++|.++|+.++|... ....+..+.+.. ..+.+.+++..
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~ 84 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIK 84 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHH
Confidence 4556777888889999 789999999999999999999998531 122333343221 24678888877
Q ss_pred HHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCC-----HH
Q psy4285 359 FQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLD-----SS 433 (533)
Q Consensus 359 ~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~-----~~ 433 (533)
+.+...+ ..++++|+|||++|+|+.+++|+|+++|||||+++.||++|+.++.++|+++|||..+.|.++. ++
T Consensus 85 ~~~~~~p--~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~~~~~i~~~ 162 (290)
T PRK05917 85 KQIWIHP--YESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPMEEKTLVSKE 162 (290)
T ss_pred HHHhhCc--cCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccchhccCCCHH
Confidence 7665443 2478999999999999999999999999999999999999999999999999999999998754 23
Q ss_pred HHHHHhhcC--HHHHHH----------------------HHHH-HHHHHHHH-HhcCCC-----HHHHHHHHHHHHHhcC
Q psy4285 434 LIMSRLDYD--DISFFN----------------------IIIW-YIKIQEIK-IEKGLA-----LTDILTEISLLVHRLE 482 (533)
Q Consensus 434 ~~~~~l~~~--~~~~~~----------------------ll~~-~~~l~~l~-~~~~~~-----~~di~~~~~~~~~~~~ 482 (533)
+....+... ..++.+ +++. ...+.++. ...|.. ..|....+. ...
T Consensus 163 ~~~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~re~~~~~L~~ll~~~RD~l~~~~~~~~~~l~~~d~~~~l~----~~~ 238 (290)
T PRK05917 163 DIAYLIGYAQGKESVTEVGQIVKGSADTDKQVLRDKTKAMLEVLLQLFRDRFLLALKVPASALAYPDLLKEIL----TLP 238 (290)
T ss_pred HHHHHHHHhCCChhHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhccHHHHHHHH----hcc
Confidence 332222111 011111 1111 00011100 111111 112221111 111
Q ss_pred CChhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHh
Q psy4285 483 IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524 (533)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~~~~~~~~~~ 524 (533)
......+++.+.+..+++..+++..+.++.++-++..+..
T Consensus 239 --~~~l~~~i~~i~~a~~~l~~N~N~~l~le~l~l~l~~~~~ 278 (290)
T PRK05917 239 --VLPLEKVLSIIERAVQALDNSSSAPSCLEWVALQLWSLKN 278 (290)
T ss_pred --cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 1113356888889999999999999999999888877654
No 62
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=2.2e-18 Score=181.40 Aligned_cols=154 Identities=24% Similarity=0.375 Sum_probs=129.1
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc--------------------------Ccc
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF--------------------------NAM 339 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~--------------------------~~~ 339 (533)
..||+.+...|+.++..++.+| +||+|||||||||+|+.+|+.+.|.... ...
T Consensus 18 ivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n 97 (620)
T PRK14954 18 ITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLN 97 (620)
T ss_pred hcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCC
Confidence 3588999999999999999999 8999999999999999999999884311 113
Q ss_pred eEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhh
Q psy4285 340 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419 (533)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~ 419 (533)
+..+++....+.+.+++....+...+ ..+.++|+||||+|.|+...+++|++.||+++..+.||++|+...++.++|+
T Consensus 98 ~~~~d~~s~~~vd~Ir~l~e~~~~~P--~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~ 175 (620)
T PRK14954 98 ISEFDAASNNSVDDIRQLRENVRYGP--QKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIA 175 (620)
T ss_pred eEEecccccCCHHHHHHHHHHHHhhh--hcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHH
Confidence 44555545556778887766554322 2367899999999999999999999999999999999999998899999999
Q ss_pred ccceeeeecCCCHHHHHHHhhcC
Q psy4285 420 SRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 420 sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
|||..+.|.+++.+++..++.++
T Consensus 176 SRc~~vef~~l~~~ei~~~L~~i 198 (620)
T PRK14954 176 SRCQRFNFKRIPLDEIQSQLQMI 198 (620)
T ss_pred hhceEEecCCCCHHHHHHHHHHH
Confidence 99999999999999999888863
No 63
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3.9e-19 Score=167.79 Aligned_cols=189 Identities=22% Similarity=0.339 Sum_probs=130.0
Q ss_pred CccccccccCCCCHH--HHHHHHHHHhhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcce
Q psy4285 263 NEDTVYNSVGYPTKT--EITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMV 340 (533)
Q Consensus 263 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~ 340 (533)
.++..|.++|...++ .+.+.+. ++.-+.+....+. -..+..+|||||||||||.+|+|+|++. +..|
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VE-LPL~~PElF~~~G----I~PPKGVLLYGPPGTGKTLLAkAVA~~T------~AtF 213 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVE-LPLKNPELFEELG----IDPPKGVLLYGPPGTGKTLLAKAVANQT------DATF 213 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhc-ccccCHHHHHHcC----CCCCCceEeeCCCCCcHHHHHHHHHhcc------CceE
Confidence 456678888775432 2333322 2222333332221 1122349999999999999999999986 7889
Q ss_pred EEecCCC------CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHh-----c
Q psy4285 341 LELNASD------DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN-----------DAQNALRRIIEK-----F 398 (533)
Q Consensus 341 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~~~~Ll~~le~-----~ 398 (533)
+.+.+|+ +.+...+|+.+.-. .. ..++|+||||+|.+.. +.|..++++|.+ +
T Consensus 214 IrvvgSElVqKYiGEGaRlVRelF~lA-re-----kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 214 IRVVGSELVQKYIGEGARLVRELFELA-RE-----KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred EEeccHHHHHHHhccchHHHHHHHHHH-hh-----cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 9999886 34556666654432 22 4678999999999843 567777777654 4
Q ss_pred CCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcC--------HHHHHHHHHHHHHHHHHHHhcCCCH
Q psy4285 399 TTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYD--------DISFFNIIIWYIKIQEIKIEKGLAL 467 (533)
Q Consensus 399 ~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~--------~~~~~~ll~~~~~l~~l~~~~~~~~ 467 (533)
..++++|++||+++.|||+|++ ||+ .+.|+.|+.+...+++.-. .-++..+.. .+.|+|+
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~---------~~~g~sG 358 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLAR---------LTEGFSG 358 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHH---------hcCCCch
Confidence 6789999999999999999999 995 8888888877777777655 223444444 6778888
Q ss_pred HHHHHHHHHH
Q psy4285 468 TDILTEISLL 477 (533)
Q Consensus 468 ~di~~~~~~~ 477 (533)
.|+-.-+.++
T Consensus 359 AdlkaictEA 368 (406)
T COG1222 359 ADLKAICTEA 368 (406)
T ss_pred HHHHHHHHHH
Confidence 8876665543
No 64
>PLN03025 replication factor C subunit; Provisional
Probab=99.81 E-value=2.7e-19 Score=177.19 Aligned_cols=164 Identities=34% Similarity=0.496 Sum_probs=133.5
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+|+++++|||+||+.++++|+|+|||++++|++++++++..+|+++++++|+.+++++++.++..++||+|+|+|.||
T Consensus 123 lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq 202 (319)
T PLN03025 123 MEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQ 202 (319)
T ss_pred HhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhhccccc---------------hhHHHHHhc----hHHHH-------hhcCCChhhHHHH
Q psy4285 81 SAATAHADEVNEDTIFTLLVSRVEKYR---------------PSTLDELVS----HQDII-------STIEIPESMLVDL 134 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~~ek~~---------------~~~l~~lls----~~~~l-------~~l~~~~~~~~~~ 134 (533)
.++. ..+.|+.+.+.++.+...+... ...+++++. ..+++ ...++++..+..+
T Consensus 203 ~~~~-~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~~~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~~~~~~~~~~~ 281 (319)
T PLN03025 203 ATHS-GFGFVNQENVFKVCDQPHPLHVKNIVRNCLKGKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNYDMPEFLKLEY 281 (319)
T ss_pred HHHh-cCCCCCHHHHHHHcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 7765 3446888777654332111110 012444432 22232 2335677788889
Q ss_pred HhhccCccccccCCCChhhHHHHHHHHHhcc
Q psy4285 135 VLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 165 (533)
Q Consensus 135 ~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~ 165 (533)
+..++++++|+..|+++.+|+++|++.++..
T Consensus 282 ~~~~~~~~~~~~~g~~~~~~l~a~~~~~~~~ 312 (319)
T PLN03025 282 LREIGFAHMRICDGVGSLLQLSGLLAKLCLV 312 (319)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999754
No 65
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.80 E-value=6.4e-18 Score=170.98 Aligned_cols=154 Identities=28% Similarity=0.429 Sum_probs=127.1
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------------CcceEEecCCC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------------NAMVLELNASD 347 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------------~~~~~~~~~~~ 347 (533)
..|++.....+..++..++.+| +||+||||+|||++|+++++.+.|.... ...++.+++..
T Consensus 16 iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~ 95 (355)
T TIGR02397 16 VIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS 95 (355)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc
Confidence 3578888888888888888888 7999999999999999999999875311 12356666665
Q ss_pred CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeee
Q psy4285 348 DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRF 427 (533)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~ 427 (533)
..+.+.+++.+..... .+ ..++++|+||||+|.++...++.|++.+++++.++.+|++|+.+..+.+++++||..+.|
T Consensus 96 ~~~~~~~~~l~~~~~~-~p-~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~ 173 (355)
T TIGR02397 96 NNGVDDIREILDNVKY-AP-SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDF 173 (355)
T ss_pred cCCHHHHHHHHHHHhc-Cc-ccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEc
Confidence 5566667776655432 22 236788999999999999999999999999999999999999998899999999999999
Q ss_pred cCCCHHHHHHHhhcC
Q psy4285 428 GPLDSSLIMSRLDYD 442 (533)
Q Consensus 428 ~~~~~~~~~~~l~~~ 442 (533)
.+++++++.+++..+
T Consensus 174 ~~~~~~~l~~~l~~~ 188 (355)
T TIGR02397 174 KRIPLEDIVERLKKI 188 (355)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999864
No 66
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.80 E-value=4.7e-18 Score=168.33 Aligned_cols=154 Identities=24% Similarity=0.383 Sum_probs=127.0
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc-----c-------------------CcceE
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ-----F-------------------NAMVL 341 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~-----~-------------------~~~~~ 341 (533)
+.||+++...+..++..++.+| +||+||+|+|||++|+.+|+.+.|... . ...+.
T Consensus 25 l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~ 104 (351)
T PRK09112 25 LFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLL 104 (351)
T ss_pred ccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEE
Confidence 4689999999999999999999 899999999999999999999988310 0 01122
Q ss_pred EecCC---------CCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q psy4285 342 ELNAS---------DDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412 (533)
Q Consensus 342 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~ 412 (533)
.+..+ ...+.+.+++....+..... .++++|+||||+|.|+..++|+|++.+|+++.++.||++|+.+.
T Consensus 105 ~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~--~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~ 182 (351)
T PRK09112 105 HITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSG--DGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSG 182 (351)
T ss_pred EeecccccccccccccCCHHHHHHHHHHhhhccc--cCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChh
Confidence 23211 12345677776655544432 36789999999999999999999999999999999999999999
Q ss_pred CCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 413 KIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 413 ~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
.+.|+++|||..+.|.+++.+++.++|.+.
T Consensus 183 ~llptIrSRc~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 183 RLLPTIRSRCQPISLKPLDDDELKKALSHL 212 (351)
T ss_pred hccHHHHhhccEEEecCCCHHHHHHHHHHh
Confidence 999999999999999999999999999874
No 67
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=7.6e-18 Score=179.11 Aligned_cols=154 Identities=26% Similarity=0.387 Sum_probs=128.0
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc-------------------CcceEEecCC
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF-------------------NAMVLELNAS 346 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~-------------------~~~~~~~~~~ 346 (533)
+.||+.+...|..++..++.+| +||+||||+|||++|+.+++.+.|.... ...+++++++
T Consensus 18 iiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~ 97 (585)
T PRK14950 18 LVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAA 97 (585)
T ss_pred hcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEecc
Confidence 3588889999999888888888 6999999999999999999999874310 1235566665
Q ss_pred CCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeee
Q psy4285 347 DDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFR 426 (533)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~ 426 (533)
...+.+.+++.+..... .+. .+.++|+||||+|+|+.+.++.|++.+|+++.++.||++++....+.++++|||..+.
T Consensus 98 ~~~~vd~ir~ii~~~~~-~p~-~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~ 175 (585)
T PRK14950 98 SHTSVDDAREIIERVQF-RPA-LARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFD 175 (585)
T ss_pred ccCCHHHHHHHHHHHhh-Ccc-cCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceee
Confidence 55677778877654432 222 3578999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHhhcC
Q psy4285 427 FGPLDSSLIMSRLDYD 442 (533)
Q Consensus 427 ~~~~~~~~~~~~l~~~ 442 (533)
|.+++..++..++..+
T Consensus 176 f~~l~~~el~~~L~~~ 191 (585)
T PRK14950 176 FHRHSVADMAAHLRKI 191 (585)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999888765
No 68
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.80 E-value=3.2e-18 Score=187.74 Aligned_cols=149 Identities=21% Similarity=0.261 Sum_probs=107.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC------CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD------RGIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
++|||||||||||++|+++|+++ +..++.+++++. .+...++..+..... ..++||||||+|
T Consensus 489 giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~------~~p~iifiDEid 556 (733)
T TIGR01243 489 GVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPEILSKWVGESEKAIREIFRKARQ------AAPAIIFFDEID 556 (733)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHhhcccCcHHHHHHHHHHHHHh------cCCEEEEEEChh
Confidence 48999999999999999999997 567777776542 223344444333221 356899999999
Q ss_pred CCCH------------HHHHHHHHHHHh--cCCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcC--
Q psy4285 382 AMTN------------DAQNALRRIIEK--FTTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYD-- 442 (533)
Q Consensus 382 ~l~~------------~~~~~Ll~~le~--~~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~-- 442 (533)
.+.+ ...+.|+..|+. ...++.+|++||.++.+|+++++ ||+ .+.+++|+.++..+++...
T Consensus 557 ~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~ 636 (733)
T TIGR01243 557 AIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR 636 (733)
T ss_pred hhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc
Confidence 8742 234567777763 35678899999999999999997 995 7777888888888777543
Q ss_pred ------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy4285 443 ------DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLL 477 (533)
Q Consensus 443 ------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~ 477 (533)
..++..+.+ .+.|+++.|+..-+.++
T Consensus 637 ~~~~~~~~~l~~la~---------~t~g~sgadi~~~~~~A 668 (733)
T TIGR01243 637 SMPLAEDVDLEELAE---------MTEGYTGADIEAVCREA 668 (733)
T ss_pred CCCCCccCCHHHHHH---------HcCCCCHHHHHHHHHHH
Confidence 123444444 67899999987655444
No 69
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.80 E-value=7.7e-19 Score=158.15 Aligned_cols=141 Identities=18% Similarity=0.219 Sum_probs=96.8
Q ss_pred hhchhhhhhhccccc-----ccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHH
Q psy4285 288 NESMDLCYKINRFID-----ENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~-----~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (533)
.||+++...+.-+++ ....+|++||||||+||||+|+.+|+++ +..+..++++.......+...+..+
T Consensus 27 iGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~------~~~~~~~sg~~i~k~~dl~~il~~l- 99 (233)
T PF05496_consen 27 IGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL------GVNFKITSGPAIEKAGDLAAILTNL- 99 (233)
T ss_dssp -S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC------T--EEEEECCC--SCHHHHHHHHT--
T ss_pred cCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc------CCCeEeccchhhhhHHHHHHHHHhc-
Confidence 456666655544332 2346789999999999999999999998 6677777776655555555444332
Q ss_pred hcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC------------------CCcEEEEEeCCCCCCChhhhcccee
Q psy4285 363 STKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFT------------------TNVRFCIICNYLSKIPPAIQSRCTR 424 (533)
Q Consensus 363 ~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~------------------~~~~~I~~~n~~~~l~~~l~sR~~~ 424 (533)
...+||||||+++++...++.|+..||.+. +...+|.+|+....+.+++++||..
T Consensus 100 -------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi 172 (233)
T PF05496_consen 100 -------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGI 172 (233)
T ss_dssp --------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSE
T ss_pred -------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcce
Confidence 246799999999999999999999999641 3366888889999999999999975
Q ss_pred -eeecCCCHHHHHHHhhcC
Q psy4285 425 -FRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 425 -i~~~~~~~~~~~~~l~~~ 442 (533)
.++..|+.+++.+++.+.
T Consensus 173 ~~~l~~Y~~~el~~Iv~r~ 191 (233)
T PF05496_consen 173 VLRLEFYSEEELAKIVKRS 191 (233)
T ss_dssp EEE----THHHHHHHHHHC
T ss_pred ecchhcCCHHHHHHHHHHH
Confidence 579999999999999876
No 70
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.80 E-value=2.1e-19 Score=161.80 Aligned_cols=151 Identities=26% Similarity=0.313 Sum_probs=118.5
Q ss_pred CCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCch------hHHHHHHHHHHhcccCCCCCcEEEEEeC
Q psy4285 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI------GIVRDQIFQFASTKTMHKSSYKLIILDE 379 (533)
Q Consensus 306 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDE 379 (533)
+.++|||||||||||++|+++|++. ..+++.++++...+. ..++++..... +..++|+||||
T Consensus 151 PknVLFyGppGTGKTm~Akalane~------kvp~l~vkat~liGehVGdgar~Ihely~rA~------~~aPcivFiDE 218 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEA------KVPLLLVKATELIGEHVGDGARRIHELYERAR------KAAPCIVFIDE 218 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhccc------CCceEEechHHHHHHHhhhHHHHHHHHHHHHH------hcCCeEEEehh
Confidence 4579999999999999999999987 788898988775443 34444433222 24689999999
Q ss_pred CCCCCH------------HHHHHHHHHHHh--cCCCcEEEEEeCCCCCCChhhhccc-eeeeecCCCHHHHHHHhhcC--
Q psy4285 380 ADAMTN------------DAQNALRRIIEK--FTTNVRFCIICNYLSKIPPAIQSRC-TRFRFGPLDSSLIMSRLDYD-- 442 (533)
Q Consensus 380 ~d~l~~------------~~~~~Ll~~le~--~~~~~~~I~~~n~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~-- 442 (533)
+|.+.. +..|+|+.-|+. ...++..|++||++..||++++||| ..+.|.-|++++...+++..
T Consensus 219 ~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 219 LDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred hhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 999854 346888888874 2456889999999999999999999 59999999999999999886
Q ss_pred ------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy4285 443 ------DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLL 477 (533)
Q Consensus 443 ------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~ 477 (533)
..+++.+.. .+.|+|++||...+++.
T Consensus 299 ~~Plpv~~~~~~~~~---------~t~g~SgRdikekvlK~ 330 (368)
T COG1223 299 KFPLPVDADLRYLAA---------KTKGMSGRDIKEKVLKT 330 (368)
T ss_pred hCCCccccCHHHHHH---------HhCCCCchhHHHHHHHH
Confidence 223444444 78899999998777653
No 71
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.79 E-value=3.2e-18 Score=170.49 Aligned_cols=154 Identities=26% Similarity=0.379 Sum_probs=127.5
Q ss_pred hhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccccC----------------------------
Q psy4285 287 LNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQFN---------------------------- 337 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~---------------------------- 337 (533)
+.||+.+...|.+.+..++.+| +||+||+|+||+++|.++|+.++|....+
T Consensus 21 iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~H 100 (365)
T PRK07471 21 LFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAH 100 (365)
T ss_pred ccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCC
Confidence 3589999999999999999999 89999999999999999999998854210
Q ss_pred cceEEecC--C-------CCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEe
Q psy4285 338 AMVLELNA--S-------DDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408 (533)
Q Consensus 338 ~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~ 408 (533)
..+..+.. . .....+.+++....+.... ..++++|+||||+|.++...+|+|++++|+++.++.||++|
T Consensus 101 PDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~--~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t 178 (365)
T PRK07471 101 GGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTA--AEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVS 178 (365)
T ss_pred CCeEEEecccccccccccccccHHHHHHHHHHhCcCc--ccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 11223322 1 1234667777765554332 24678999999999999999999999999999999999999
Q ss_pred CCCCCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 409 NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 409 n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
+.++.+.++++|||..+.|.+++.+++.++|.+.
T Consensus 179 ~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 179 HAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred CCchhchHHhhccceEEECCCCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999875
No 72
>KOG2028|consensus
Probab=99.79 E-value=3.9e-19 Score=167.24 Aligned_cols=210 Identities=20% Similarity=0.255 Sum_probs=151.2
Q ss_pred hhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEE
Q psy4285 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLI 375 (533)
Q Consensus 296 ~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 375 (533)
.|+.++++++.|.++||||||||||++|+.++.....+ ...++++++... +...+|..++....... +..+..||
T Consensus 152 llrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~---SyrfvelSAt~a-~t~dvR~ife~aq~~~~-l~krkTil 226 (554)
T KOG2028|consen 152 LLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH---SYRFVELSATNA-KTNDVRDIFEQAQNEKS-LTKRKTIL 226 (554)
T ss_pred HHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC---ceEEEEEecccc-chHHHHHHHHHHHHHHh-hhcceeEE
Confidence 46778899999999999999999999999999876333 356788887763 44556666554333222 23567899
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEe--CCCCCCChhhhccceeeeecCCCHHHHHHHhhcC-----------
Q psy4285 376 ILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC--NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD----------- 442 (533)
Q Consensus 376 iiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~--n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~----------- 442 (533)
||||+++++...|..|+-.+|.. .+.+|.+| |....+..+|.|||.++.+.+++.+.+..+|.+-
T Consensus 227 FiDEiHRFNksQQD~fLP~VE~G--~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~ 304 (554)
T KOG2028|consen 227 FIDEIHRFNKSQQDTFLPHVENG--DITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPT 304 (554)
T ss_pred EeHHhhhhhhhhhhcccceeccC--ceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccC
Confidence 99999999999999999999753 36666655 6777999999999999999999999999999883
Q ss_pred ----------------------HHHHHHHHHHHHHH---------------------HH-------HHHhcCCCHHHHHH
Q psy4285 443 ----------------------DISFFNIIIWYIKI---------------------QE-------IKIEKGLALTDILT 472 (533)
Q Consensus 443 ----------------------~~~~~~ll~~~~~l---------------------~~-------l~~~~~~~~~di~~ 472 (533)
.+|.+..++..+.. .+ +....|-.+++.++
T Consensus 305 ~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntIS 384 (554)
T KOG2028|consen 305 DPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTIS 384 (554)
T ss_pred CCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhccceecccchhHHHHHH
Confidence 12222222211100 00 11223556677788
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHH-------HHHHHHhCCCChHHHHHH
Q psy4285 473 EISLLVHRLEIPESMLVDLVLKMS-------DIEYRLAAGTSEKIQLSA 514 (533)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~g~~~~~~l~~ 514 (533)
.+++.++..+ .+...+++.++. ++.+||.+=+++.++|.+
T Consensus 385 A~HKSmRG~D--~nAslY~LaRMLegGEdPLYVARRlvR~ASEDIGlaD 431 (554)
T KOG2028|consen 385 ALHKSMRGSD--QNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLAD 431 (554)
T ss_pred HHHHhhcCCc--cchHHHHHHHHHccCCCcHHHHHHHHHHhhcccCcCC
Confidence 8888887755 345556666665 789999999998887653
No 73
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.78 E-value=3.7e-17 Score=160.47 Aligned_cols=150 Identities=22% Similarity=0.311 Sum_probs=118.8
Q ss_pred hchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc-------------------CcceEEecCCC-
Q psy4285 289 ESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF-------------------NAMVLELNASD- 347 (533)
Q Consensus 289 ~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~-------------------~~~~~~~~~~~- 347 (533)
|+......+... .++.+| +||+||+|+|||++|+.+|+.+.|..+. ...+..+.+..
T Consensus 5 W~~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~ 82 (325)
T PRK08699 5 WHQEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD 82 (325)
T ss_pred ccHHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc
Confidence 344444444444 357778 8999999999999999999999885421 13355555421
Q ss_pred ---------CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhh
Q psy4285 348 ---------DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418 (533)
Q Consensus 348 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l 418 (533)
..+.+.+|+........+. .++.+|+++|+++.|+...+++|++++|+++.++.||++|+.+..+.+++
T Consensus 83 ~~~~g~~~~~I~id~iR~l~~~~~~~p~--~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti 160 (325)
T PRK08699 83 EPENGRKLLQIKIDAVREIIDNVYLTSV--RGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTI 160 (325)
T ss_pred cccccccCCCcCHHHHHHHHHHHhhCcc--cCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHH
Confidence 2467788887655543332 36789999999999999999999999999988899999999999999999
Q ss_pred hccceeeeecCCCHHHHHHHhhcC
Q psy4285 419 QSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 419 ~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
+|||..+.|.+++.+++..+|.+.
T Consensus 161 ~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 161 KSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred HHHhhhhcCCCCCHHHHHHHHHhc
Confidence 999999999999999999888753
No 74
>KOG0990|consensus
Probab=99.77 E-value=6.9e-19 Score=163.63 Aligned_cols=185 Identities=41% Similarity=0.504 Sum_probs=155.2
Q ss_pred hhhhccccchhHHHHHhchHHHHhhcCCChhhHHHHHhhccCccccccCCCChhhHHHHHHHHHhcccc-cceeeeecCC
Q psy4285 99 LVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD-KLEVLELNAS 177 (533)
Q Consensus 99 ~~~~~ek~~~~~l~~lls~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~-~~~~~e~nas 177 (533)
-.+|+++|+|..+.+++++.+++.++.- ......+.|..++++||+|++..+.+.+..+.+.+. +..++|+|+|
T Consensus 28 ~~pwvekyrP~~l~dv~~~~ei~st~~~-----~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 28 PQPWVEKYRPPFLGIVIKQEPIWSTENR-----YSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CCCCccCCCCchhhhHhcCCchhhHHHH-----hccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 3589999999999999999999876531 112234458889999999999999999999998654 7889999999
Q ss_pred cccchhhhHHHHhhhhhccc--ccCC--CceEEEEcCccccCHHHHHHHHc-----------------------------
Q psy4285 178 DDRGIGIVRDQIFQFASTKT--MHKS--SYKLIILDEADAMTNDAQNALRR----------------------------- 224 (533)
Q Consensus 178 d~~g~~~~~d~i~~~a~~~~--l~~~--~~~~iilDE~d~l~~~a~~~LRr----------------------------- 224 (533)
|.||++..+.++..||..++ +++. .+|++||||+|.|+.+||.+|||
T Consensus 103 d~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~qsRc 182 (360)
T KOG0990|consen 103 DDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQQSRC 182 (360)
T ss_pred CccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCchhhccc
Confidence 99999999999989998884 4565 78899999999999999999998
Q ss_pred ------------------------cCCCChhHHHHHHHhccCchHHhhcHHHHHHhhcCCCCCccc-----cccccCCCC
Q psy4285 225 ------------------------KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDT-----VYNSVGYPT 275 (533)
Q Consensus 225 ------------------------~~~~~~~~l~~l~~~s~~di~~~L~~L~~~~~~~~~~~~~~~-----~~~~~~~~~ 275 (533)
..+.++++..++...+.||++.+++.|+...... .++.+.. +|...|++.
T Consensus 183 trfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~-~~~~e~~~~~~~vy~c~g~p~ 261 (360)
T KOG0990|consen 183 TRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKV-MERKELNNPNDLVYQCKGAPQ 261 (360)
T ss_pred ccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-CCCCCCCCchhhHHHhcCCCC
Confidence 1367788889999999999999999999988764 3334444 899999999
Q ss_pred HHHHHHHHHHHhhh
Q psy4285 276 KTEITNILRWLLNE 289 (533)
Q Consensus 276 ~~~~~~~l~~~~~~ 289 (533)
+.++..++.|+..+
T Consensus 262 ~~dI~~I~~~il~~ 275 (360)
T KOG0990|consen 262 PSDIRQIIEKRMNG 275 (360)
T ss_pred hhHHHHHHHHHhcC
Confidence 99999999887654
No 75
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=9.9e-17 Score=162.53 Aligned_cols=153 Identities=29% Similarity=0.407 Sum_probs=125.3
Q ss_pred hhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc------cCcceEEecCCCCCchhHHHHHHHH
Q psy4285 288 NESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ------FNAMVLELNASDDRGIGIVRDQIFQ 360 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (533)
.||+.+...+...++.+..+| ++||||||+|||++|+++++.+.+... +...++++++....+.+.+++.+..
T Consensus 20 ig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~ 99 (367)
T PRK14970 20 VGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQ 99 (367)
T ss_pred CCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHH
Confidence 578888888888888887775 899999999999999999999977421 1233455665555556777776665
Q ss_pred HHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhh
Q psy4285 361 FASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440 (533)
Q Consensus 361 ~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~ 440 (533)
....+ ..++++++||||+|.++...++.|++.+++++..+.+|++|+....+.+++.|||..+.|.+++++++..++.
T Consensus 100 ~~~~p--~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~ 177 (367)
T PRK14970 100 VRIPP--QTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLA 177 (367)
T ss_pred Hhhcc--ccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHH
Confidence 43222 2356789999999999999999999999998888999999999999999999999999999999999998888
Q ss_pred cC
Q psy4285 441 YD 442 (533)
Q Consensus 441 ~~ 442 (533)
.+
T Consensus 178 ~~ 179 (367)
T PRK14970 178 GI 179 (367)
T ss_pred HH
Confidence 64
No 76
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.76 E-value=6.7e-18 Score=154.46 Aligned_cols=145 Identities=28% Similarity=0.453 Sum_probs=114.3
Q ss_pred hhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------------CcceEEecCC-CCCchhHHH
Q psy4285 296 KINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------------NAMVLELNAS-DDRGIGIVR 355 (533)
Q Consensus 296 ~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------------~~~~~~~~~~-~~~~~~~~~ 355 (533)
.+.+.+..++.+| +||+||||+|||++|+.+++.+.|.... ...+..+... ...+.+.++
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~ 82 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVR 82 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHH
Confidence 3556667777777 8999999999999999999999875210 0112222221 124556777
Q ss_pred HHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHH
Q psy4285 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLI 435 (533)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~ 435 (533)
..+..+.... ..+.++|+||||+|.++.+.++.|++.||++++++.+|++++.+..+.++++|||..+.|.+++.+++
T Consensus 83 ~i~~~~~~~~--~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~ 160 (188)
T TIGR00678 83 ELVEFLSRTP--QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEAL 160 (188)
T ss_pred HHHHHHccCc--ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHH
Confidence 6665544333 23678999999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHhhcC
Q psy4285 436 MSRLDYD 442 (533)
Q Consensus 436 ~~~l~~~ 442 (533)
.+++.+.
T Consensus 161 ~~~l~~~ 167 (188)
T TIGR00678 161 LQWLIRQ 167 (188)
T ss_pred HHHHHHc
Confidence 9888775
No 77
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.75 E-value=1.4e-16 Score=174.23 Aligned_cols=291 Identities=19% Similarity=0.253 Sum_probs=178.3
Q ss_pred cCccccccCCCChhhHHHHHHHHHhccc-----ccceeeeecCCccc-ch---hhhHHHHhhhhhcccccCCCceEEEEc
Q psy4285 139 SDIEYRLAAGTSEKIQLSALIAAFNSAR-----DKLEVLELNASDDR-GI---GIVRDQIFQFASTKTMHKSSYKLIILD 209 (533)
Q Consensus 139 ~~~~~~~~~G~~~~~~l~~~~~~~~~~~-----~~~~~~e~nasd~~-g~---~~~~d~i~~~a~~~~l~~~~~~~iilD 209 (533)
..+...|+||+|||.-+++++..+.... .+..++.+|.+..- |. +-.+.+++..-.... ...+.++|+|
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~--~~~~~ILfiD 281 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIE--KEPNAILFID 281 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHh--ccCCeEEEEe
Confidence 5677889999999999999998874321 14677888754432 11 111133322222110 1234599999
Q ss_pred CccccCH---------HHHHHH-------------------------------Hc-------------------------
Q psy4285 210 EADAMTN---------DAQNAL-------------------------------RR------------------------- 224 (533)
Q Consensus 210 E~d~l~~---------~a~~~L-------------------------------Rr------------------------- 224 (533)
|++.+.. ++++.| ||
T Consensus 282 Eih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~ 361 (731)
T TIGR02639 282 EIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKY 361 (731)
T ss_pred cHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHH
Confidence 9987752 223322 22
Q ss_pred ----cCCCChhHHHHHHHhccCch------HHhhcHHHHHHhhcC--------CCCCccc----cccccCCCCHH-----
Q psy4285 225 ----KLPVTPDGKKAIIDLSDGDM------RKVLNILQSAATAHA--------DEVNEDT----VYNSVGYPTKT----- 277 (533)
Q Consensus 225 ----~~~~~~~~l~~l~~~s~~di------~~~L~~L~~~~~~~~--------~~~~~~~----~~~~~~~~~~~----- 277 (533)
.+.++++++..++..+...+ ..+++.+.......+ ..++.+. +-...+.|...
T Consensus 362 e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~ 441 (731)
T TIGR02639 362 EEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHIPVKTVSVDD 441 (731)
T ss_pred HhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCCChhhhhhHH
Confidence 13577888888888776544 334544443332111 0122221 23344555321
Q ss_pred -----HHHHHHHHHhhhchhhhhhhccccccc--------CC-CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEe
Q psy4285 278 -----EITNILRWLLNESMDLCYKINRFIDEN--------EL-PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLEL 343 (533)
Q Consensus 278 -----~~~~~l~~~~~~~~~~~~~l~~~~~~~--------~~-~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 343 (533)
.+...+.....||+++++.+...+... ++ .+++|+||||||||++|+++|+.+ +..++.+
T Consensus 442 ~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l------~~~~~~~ 515 (731)
T TIGR02639 442 REKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL------GVHLERF 515 (731)
T ss_pred HHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh------cCCeEEE
Confidence 122233344578888887776665532 12 238999999999999999999988 3345555
Q ss_pred cCCCCCchhHHHHH---------------HHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc----------
Q psy4285 344 NASDDRGIGIVRDQ---------------IFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF---------- 398 (533)
Q Consensus 344 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~---------- 398 (533)
+.++......+... +..... ..+++|++|||+|++.++.++.|++++++.
T Consensus 516 d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~-----~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~v 590 (731)
T TIGR02639 516 DMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVR-----KHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKA 590 (731)
T ss_pred eCchhhhcccHHHHhcCCCCCcccchhhHHHHHHH-----hCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCccc
Confidence 54442221111111 111111 135689999999999999999999999864
Q ss_pred -CCCcEEEEEeCCCC-------------------------CCChhhhccce-eeeecCCCHHHHHHHhhcC
Q psy4285 399 -TTNVRFCIICNYLS-------------------------KIPPAIQSRCT-RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 399 -~~~~~~I~~~n~~~-------------------------~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~ 442 (533)
-.++.||+|||... .+.|.++.|+. .+.|.|++.+++.+++...
T Consensus 591 d~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~ 661 (731)
T TIGR02639 591 DFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKF 661 (731)
T ss_pred CCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHH
Confidence 24677999997531 25788899994 8999999999999888765
No 78
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.75 E-value=1.3e-16 Score=152.48 Aligned_cols=150 Identities=19% Similarity=0.341 Sum_probs=123.2
Q ss_pred hhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------------CcceEEecCC-C
Q psy4285 288 NESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------------NAMVLELNAS-D 347 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------------~~~~~~~~~~-~ 347 (533)
..|+.+...+...+..++.+| +||+|| +||+++|+.+|+.+.|.... ...+..+.+. .
T Consensus 5 ~~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~ 82 (290)
T PRK07276 5 QKQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQ 82 (290)
T ss_pred HHHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCC
Confidence 456778888999999999999 799996 68999999999999986421 1223333332 2
Q ss_pred CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeee
Q psy4285 348 DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRF 427 (533)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~ 427 (533)
..+.+.+|+..+.+...+. .++++|+|||++|+|+..++|+|++++|||++++.||++|+.++.+.|+|+|||..+.|
T Consensus 83 ~I~idqIR~l~~~~~~~p~--~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f 160 (290)
T PRK07276 83 VIKTDTIRELVKNFSQSGY--EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHF 160 (290)
T ss_pred cCCHHHHHHHHHHHhhCcc--cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeC
Confidence 2467889988777765543 46789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhhcC
Q psy4285 428 GPLDSSLIMSRLDYD 442 (533)
Q Consensus 428 ~~~~~~~~~~~l~~~ 442 (533)
.+ +.+++.+++...
T Consensus 161 ~~-~~~~~~~~L~~~ 174 (290)
T PRK07276 161 PK-NEAYLIQLLEQK 174 (290)
T ss_pred CC-cHHHHHHHHHHc
Confidence 76 788888887654
No 79
>PRK04195 replication factor C large subunit; Provisional
Probab=99.75 E-value=9.9e-17 Score=167.54 Aligned_cols=146 Identities=26% Similarity=0.380 Sum_probs=116.7
Q ss_pred hchhhhhhhcccccc---cC-CCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhc
Q psy4285 289 ESMDLCYKINRFIDE---NE-LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364 (533)
Q Consensus 289 ~~~~~~~~l~~~~~~---~~-~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (533)
+++.....+..|+.. +. .++++|+|||||||||+|+++|+.+ +..++++++++.+....++..+......
T Consensus 18 g~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el------~~~~ielnasd~r~~~~i~~~i~~~~~~ 91 (482)
T PRK04195 18 GNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY------GWEVIELNASDQRTADVIERVAGEAATS 91 (482)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEEcccccccHHHHHHHHHHhhcc
Confidence 455555555555543 22 3459999999999999999999998 6678999999888777777777666554
Q ss_pred ccCCCCCcEEEEEeCCCCCCH----HHHHHHHHHHHhcCCCcEEEEEeCCCCCCCh-hhhccceeeeecCCCHHHHHHHh
Q psy4285 365 KTMHKSSYKLIILDEADAMTN----DAQNALRRIIEKFTTNVRFCIICNYLSKIPP-AIQSRCTRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 365 ~~~~~~~~~vliiDE~d~l~~----~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~-~l~sR~~~i~~~~~~~~~~~~~l 439 (533)
........++|||||+|.+.. ...++|+++++. .+..+|++||.+..+.+ ++++||..+.|.+++.+++..++
T Consensus 92 ~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L 169 (482)
T PRK04195 92 GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVL 169 (482)
T ss_pred CcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHH
Confidence 443323678999999999976 567889999984 44678999999888887 89999999999999999999999
Q ss_pred hcC
Q psy4285 440 DYD 442 (533)
Q Consensus 440 ~~~ 442 (533)
..+
T Consensus 170 ~~i 172 (482)
T PRK04195 170 KRI 172 (482)
T ss_pred HHH
Confidence 886
No 80
>KOG0735|consensus
Probab=99.75 E-value=1.1e-16 Score=162.56 Aligned_cols=148 Identities=20% Similarity=0.243 Sum_probs=109.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC------CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD------RGIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
++|+|||||||||.+|.++|... +..++.+.+++. .++..+|..+.... ..+++|||+||+|
T Consensus 703 giLLyGppGcGKT~la~a~a~~~------~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~------~a~PCiLFFDEfd 770 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNS------NLRFISVKGPELLSKYIGASEQNVRDLFERAQ------SAKPCILFFDEFD 770 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhC------CeeEEEecCHHHHHHHhcccHHHHHHHHHHhh------ccCCeEEEecccc
Confidence 49999999999999999999987 778888888763 34455666544432 2578999999999
Q ss_pred CCCH-----------HHHHHHHHHHH--hcCCCcEEEEEeCCCCCCChhhhc--cceeeee-cCCCHHHHHHHhhcC---
Q psy4285 382 AMTN-----------DAQNALRRIIE--KFTTNVRFCIICNYLSKIPPAIQS--RCTRFRF-GPLDSSLIMSRLDYD--- 442 (533)
Q Consensus 382 ~l~~-----------~~~~~Ll~~le--~~~~~~~~I~~~n~~~~l~~~l~s--R~~~i~~-~~~~~~~~~~~l~~~--- 442 (533)
.+.+ ...|.|+..|+ |.-.++.++.+|.+++.+||+|++ |++...+ +.|++.+..+++..+
T Consensus 771 SiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s 850 (952)
T KOG0735|consen 771 SIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNS 850 (952)
T ss_pred ccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhc
Confidence 9965 45688888887 345678889999999999999999 8876555 456666666666655
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy4285 443 -----DISFFNIIIWYIKIQEIKIEKGLALTDILTEISL 476 (533)
Q Consensus 443 -----~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~ 476 (533)
..++.- +.. .+.|+++.|+-.-+.+
T Consensus 851 ~~~~~~vdl~~-------~a~--~T~g~tgADlq~ll~~ 880 (952)
T KOG0735|consen 851 LLKDTDVDLEC-------LAQ--KTDGFTGADLQSLLYN 880 (952)
T ss_pred cCCccccchHH-------Hhh--hcCCCchhhHHHHHHH
Confidence 122222 222 6789999998655544
No 81
>KOG0736|consensus
Probab=99.74 E-value=3.1e-16 Score=160.76 Aligned_cols=113 Identities=22% Similarity=0.294 Sum_probs=87.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC------CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD------RGIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
.+|||||||||||.+|+|+|.++ .-.|+.+.+++. .++..+|+.+.+.. .+.++|||+||+|
T Consensus 707 GILLYGPPGTGKTLlAKAVATEc------sL~FlSVKGPELLNMYVGqSE~NVR~VFerAR------~A~PCVIFFDELD 774 (953)
T KOG0736|consen 707 GILLYGPPGTGKTLLAKAVATEC------SLNFLSVKGPELLNMYVGQSEENVREVFERAR------SAAPCVIFFDELD 774 (953)
T ss_pred eeEEECCCCCchHHHHHHHHhhc------eeeEEeecCHHHHHHHhcchHHHHHHHHHHhh------ccCCeEEEecccc
Confidence 49999999999999999999998 677888887763 34556666544432 2578999999999
Q ss_pred CCCHH-------------HHHHHHHHHHh----cCCCcEEEEEeCCCCCCChhhhc--cceeeeecCCCH
Q psy4285 382 AMTND-------------AQNALRRIIEK----FTTNVRFCIICNYLSKIPPAIQS--RCTRFRFGPLDS 432 (533)
Q Consensus 382 ~l~~~-------------~~~~Ll~~le~----~~~~~~~I~~~n~~~~l~~~l~s--R~~~i~~~~~~~ 432 (533)
.+.+. ..+.|+.-|+. ....+.+|.+||+|+-+||+|++ ||+++.+-.+++
T Consensus 775 SlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~ 844 (953)
T KOG0736|consen 775 SLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNE 844 (953)
T ss_pred ccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCc
Confidence 99763 34556666664 34568889999999999999999 998777655543
No 82
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.72 E-value=2.3e-16 Score=173.42 Aligned_cols=154 Identities=23% Similarity=0.303 Sum_probs=107.7
Q ss_pred HHHHHHhhhchhhhhhhcccccc-------cCCC--ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCch
Q psy4285 281 NILRWLLNESMDLCYKINRFIDE-------NELP--HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351 (533)
Q Consensus 281 ~~l~~~~~~~~~~~~~l~~~~~~-------~~~~--~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 351 (533)
..+...+.||+..+..+...+.. ...| .++|+||||||||.+|+++|+.+++. ...++.++.++....
T Consensus 562 ~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~---~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 562 DRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG---EQNLITINMSEFQEA 638 (852)
T ss_pred HHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC---CcceEEEeHHHhhhh
Confidence 33444457777776666554432 2223 38999999999999999999998654 235555554432211
Q ss_pred hHHHH---------------HHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CCcEEE
Q psy4285 352 GIVRD---------------QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFT-----------TNVRFC 405 (533)
Q Consensus 352 ~~~~~---------------~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~-----------~~~~~I 405 (533)
..+.. .+..... ..+++||+|||++++.++.++.|++++++.. .++.||
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~-----~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI 713 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVR-----RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVIL 713 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHH-----hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEE
Confidence 11111 1111111 1356899999999999999999999999764 778999
Q ss_pred EEeCCCC-----------------------------CCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 406 IICNYLS-----------------------------KIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 406 ~~~n~~~-----------------------------~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
+|||... .+.|++++|+..+.|.|++.+++.+++...
T Consensus 714 ~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~ 779 (852)
T TIGR03345 714 LTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLK 779 (852)
T ss_pred EeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHH
Confidence 9998411 267889999999999999999999888765
No 83
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.72 E-value=1.9e-16 Score=145.22 Aligned_cols=141 Identities=16% Similarity=0.220 Sum_probs=111.5
Q ss_pred hhchhhhhhhcccccc-----cCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHH
Q psy4285 288 NESMDLCYKINRFIDE-----NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~-----~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (533)
.||+++.+++.-+++. ....|+||+||||.||||+|..+|+++ +..+...+++-......+...+...
T Consensus 29 iGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em------gvn~k~tsGp~leK~gDlaaiLt~L- 101 (332)
T COG2255 29 IGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL------GVNLKITSGPALEKPGDLAAILTNL- 101 (332)
T ss_pred cChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh------cCCeEecccccccChhhHHHHHhcC-
Confidence 4666666666544432 234689999999999999999999999 6666666666655555555544332
Q ss_pred hcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC------------------CCcEEEEEeCCCCCCChhhhccc-e
Q psy4285 363 STKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFT------------------TNVRFCIICNYLSKIPPAIQSRC-T 423 (533)
Q Consensus 363 ~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~------------------~~~~~I~~~n~~~~l~~~l~sR~-~ 423 (533)
...+||||||++++++...+.|+.+||.+. +...+|.+|.+...+..+|++|| .
T Consensus 102 -------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi 174 (332)
T COG2255 102 -------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGI 174 (332)
T ss_pred -------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCC
Confidence 467899999999999999999999999641 33568888899999999999999 5
Q ss_pred eeeecCCCHHHHHHHhhcC
Q psy4285 424 RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 424 ~i~~~~~~~~~~~~~l~~~ 442 (533)
..++..|+++++..++.+-
T Consensus 175 ~~rlefY~~~eL~~Iv~r~ 193 (332)
T COG2255 175 IQRLEFYTVEELEEIVKRS 193 (332)
T ss_pred eeeeecCCHHHHHHHHHHH
Confidence 8889999999999999886
No 84
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.71 E-value=4.9e-16 Score=171.85 Aligned_cols=153 Identities=21% Similarity=0.269 Sum_probs=107.9
Q ss_pred HHHHHhhhchhhhhhhccccccc-------CCC--ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchh
Q psy4285 282 ILRWLLNESMDLCYKINRFIDEN-------ELP--HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIG 352 (533)
Q Consensus 282 ~l~~~~~~~~~~~~~l~~~~~~~-------~~~--~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 352 (533)
.+...+.||++++..+...+... ..| .++|+||||||||++|+++|+.+++.. ..++.++.++.....
T Consensus 506 ~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~---~~~~~~d~s~~~~~~ 582 (821)
T CHL00095 506 TLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE---DAMIRLDMSEYMEKH 582 (821)
T ss_pred HhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc---cceEEEEchhccccc
Confidence 33445578888888776665422 112 379999999999999999999997752 355566554432211
Q ss_pred HHHHH---------------HHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCCcEEEE
Q psy4285 353 IVRDQ---------------IFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF-----------TTNVRFCI 406 (533)
Q Consensus 353 ~~~~~---------------~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~ 406 (533)
.+... +..... ..+++|++|||+|++.++.++.|++++|++ ..++.||+
T Consensus 583 ~~~~l~g~~~gyvg~~~~~~l~~~~~-----~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 583 TVSKLIGSPPGYVGYNEGGQLTEAVR-----KKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred cHHHhcCCCCcccCcCccchHHHHHH-----hCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 11111 111111 135689999999999999999999999974 36788999
Q ss_pred EeCCCCC-------------------------------------CChhhhccc-eeeeecCCCHHHHHHHhhcC
Q psy4285 407 ICNYLSK-------------------------------------IPPAIQSRC-TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 407 ~~n~~~~-------------------------------------l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~ 442 (533)
|||.... +.|.+++|+ ..+.|.|++.+++.+++...
T Consensus 658 Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~ 731 (821)
T CHL00095 658 TSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIM 731 (821)
T ss_pred eCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 9874311 346788898 68999999999998888665
No 85
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=4.3e-17 Score=170.30 Aligned_cols=102 Identities=24% Similarity=0.433 Sum_probs=94.4
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||||+.+++|||+||++++|++||+|||+.|+|++++.++|.++|++|+.+|++.++++.+..|++.++||+|+|+|+|+
T Consensus 143 LEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 143 LEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred HHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhCCCCcchhhHHhhhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLVSR 102 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~ 102 (533)
++.....+.|+.+.|..+++..
T Consensus 223 QAia~~~~~It~~~V~~~LG~~ 244 (830)
T PRK07003 223 QAIAYSANEVTETAVSGMLGAL 244 (830)
T ss_pred HHHHhccCCcCHHHHHHHhCCC
Confidence 8776555679998887766643
No 86
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.70 E-value=4.5e-15 Score=143.35 Aligned_cols=149 Identities=19% Similarity=0.240 Sum_probs=118.4
Q ss_pred hhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccc-----cCc--ceEEecC-CCCCchhHHHHHHHHHHh
Q psy4285 293 LCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQ-----FNA--MVLELNA-SDDRGIGIVRDQIFQFAS 363 (533)
Q Consensus 293 ~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~-----~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~ 363 (533)
+...+...++.++.+| .||+|+.|.||+++++.+++.+.|... -.+ .+..++. ....+.+.+++....+..
T Consensus 4 ~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~ 83 (299)
T PRK07132 4 WIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYF 83 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhcc
Confidence 3456667778888888 689999999999999999999988431 011 2333431 122456677776665533
Q ss_pred cccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 364 TKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 364 ~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
.+. ..++++|+|||++++++..++|+|++.||+||+++.+|++|+.+..+.|+++|||..+.|.+++++++..+|...
T Consensus 84 ~~~-~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 84 SSF-VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred CCc-ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 321 125889999999999999999999999999999999999999999999999999999999999999999888763
No 87
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=6.7e-17 Score=163.15 Aligned_cols=101 Identities=21% Similarity=0.313 Sum_probs=94.0
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||.+++|||+|+.+++|+|||+|||+.|+|++++.+++.++|+++|.++++.++++++..|++.|+||+|+|+++||
T Consensus 145 LEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLe 224 (484)
T PRK14956 145 LEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFME 224 (484)
T ss_pred hhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLVS 101 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~ 101 (533)
.+.......|+.+.|.++++.
T Consensus 225 q~i~~~~~~it~~~V~~~lg~ 245 (484)
T PRK14956 225 QAIVFTDSKLTGVKIRKMIGY 245 (484)
T ss_pred HHHHhCCCCcCHHHHHHHhCC
Confidence 877655557999988776653
No 88
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.70 E-value=9.2e-16 Score=165.46 Aligned_cols=209 Identities=21% Similarity=0.274 Sum_probs=132.1
Q ss_pred CCCChhHHHHHHHhccCch------HHhhcHHHHHHhhcC--------CCCCccc----cccccCCCCHH----------
Q psy4285 226 LPVTPDGKKAIIDLSDGDM------RKVLNILQSAATAHA--------DEVNEDT----VYNSVGYPTKT---------- 277 (533)
Q Consensus 226 ~~~~~~~l~~l~~~s~~di------~~~L~~L~~~~~~~~--------~~~~~~~----~~~~~~~~~~~---------- 277 (533)
+.++++++...++++...+ ..+++.|...+...+ ..++.+. +-...|.|...
T Consensus 371 v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~ 450 (758)
T PRK11034 371 VRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLK 450 (758)
T ss_pred CCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCChhhhhhhHHHHHH
Confidence 4667778877777665444 244555544432111 1112111 33445555321
Q ss_pred HHHHHHHHHhhhchhhhhhhccccccc--------CC-CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC
Q psy4285 278 EITNILRWLLNESMDLCYKINRFIDEN--------EL-PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD 348 (533)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~~l~~~~~~~--------~~-~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 348 (533)
.+...+...+.||+++++.+...+... ++ .+++|+||||||||++|+++|+.+ +..++.+++++.
T Consensus 451 ~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l------~~~~i~id~se~ 524 (758)
T PRK11034 451 NLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL------GIELLRFDMSEY 524 (758)
T ss_pred HHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh------CCCcEEeechhh
Confidence 122223334578888888777666521 11 248999999999999999999998 445666666554
Q ss_pred CchhHHHHHHHH------------HHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CCcEEE
Q psy4285 349 RGIGIVRDQIFQ------------FASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFT-----------TNVRFC 405 (533)
Q Consensus 349 ~~~~~~~~~~~~------------~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~-----------~~~~~I 405 (533)
.....+...++. +... ....+++|++|||+|++.++.++.|+++|++.. .++.||
T Consensus 525 ~~~~~~~~LiG~~~gyvg~~~~g~L~~~--v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI 602 (758)
T PRK11034 525 MERHTVSRLIGAPPGYVGFDQGGLLTDA--VIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLV 602 (758)
T ss_pred cccccHHHHcCCCCCcccccccchHHHH--HHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEE
Confidence 322222222110 0000 001356899999999999999999999998641 467799
Q ss_pred EEeCCC-------------------------CCCChhhhccce-eeeecCCCHHHHHHHhhcC
Q psy4285 406 IICNYL-------------------------SKIPPAIQSRCT-RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 406 ~~~n~~-------------------------~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~ 442 (533)
+|||.- ..+.|.++.|++ .+.|.|++.+++..++...
T Consensus 603 ~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~ 665 (758)
T PRK11034 603 MTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKF 665 (758)
T ss_pred EeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHH
Confidence 999832 136789999995 8999999999998887654
No 89
>KOG0733|consensus
Probab=99.69 E-value=1.8e-16 Score=158.68 Aligned_cols=147 Identities=22% Similarity=0.291 Sum_probs=113.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCC------CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD------DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
.+|||||||||||.+|+++|.++ +.+++.+++++ +.+.+.+++.+....+ ..++|+||||+|
T Consensus 225 GvLlHGPPGCGKT~lA~AiAgel------~vPf~~isApeivSGvSGESEkkiRelF~~A~~------~aPcivFiDeID 292 (802)
T KOG0733|consen 225 GVLLHGPPGCGKTSLANAIAGEL------GVPFLSISAPEIVSGVSGESEKKIRELFDQAKS------NAPCIVFIDEID 292 (802)
T ss_pred ceeeeCCCCccHHHHHHHHhhhc------CCceEeecchhhhcccCcccHHHHHHHHHHHhc------cCCeEEEeeccc
Confidence 39999999999999999999998 88889888765 3456677777665443 357999999999
Q ss_pred CCCHHH-----------HHHHHHHHHhc------CCCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhhc
Q psy4285 382 AMTNDA-----------QNALRRIIEKF------TTNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 382 ~l~~~~-----------~~~Ll~~le~~------~~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~ 441 (533)
.+++.. ...|+..|++. ...+.+|.+||+|+.+||+|++ || ..|.+.-|+..+..++|..
T Consensus 293 AI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~ 372 (802)
T KOG0733|consen 293 AITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRI 372 (802)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHH
Confidence 998643 24477777753 2457899999999999999998 89 4899999999998888887
Q ss_pred C--------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 442 D--------DISFFNIIIWYIKIQEIKIEKGLALTDILTEIS 475 (533)
Q Consensus 442 ~--------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~ 475 (533)
+ +-+..++.. .+.||.+.|+..-+.
T Consensus 373 ~~~~lrl~g~~d~~qlA~---------lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 373 ICRGLRLSGDFDFKQLAK---------LTPGFVGADLMALCR 405 (802)
T ss_pred HHhhCCCCCCcCHHHHHh---------cCCCccchhHHHHHH
Confidence 6 223344444 677888887654433
No 90
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.69 E-value=2.8e-15 Score=153.66 Aligned_cols=144 Identities=25% Similarity=0.338 Sum_probs=111.5
Q ss_pred hhchhhhhh---hcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhc
Q psy4285 288 NESMDLCYK---INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364 (533)
Q Consensus 288 ~~~~~~~~~---l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (533)
.|+++.+.. +..++..+..++++|+|||||||||+|+.+++.+ +..+..+++.. .+.+.+++.+......
T Consensus 15 vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~------~~~~~~l~a~~-~~~~~ir~ii~~~~~~ 87 (413)
T PRK13342 15 VGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT------DAPFEALSAVT-SGVKDLREVIEEARQR 87 (413)
T ss_pred cCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeccc-ccHHHHHHHHHHHHHh
Confidence 456666555 7777888887889999999999999999999987 55677777765 3455566665554332
Q ss_pred ccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEe--CCCCCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 365 KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC--NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 365 ~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~--n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
.. .+...+|||||+|+++...++.|+..+++. .+.+|.+| |....++++++|||..+.|.+++.+++..++.+.
T Consensus 88 ~~--~g~~~vL~IDEi~~l~~~~q~~LL~~le~~--~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~ 163 (413)
T PRK13342 88 RS--AGRRTILFIDEIHRFNKAQQDALLPHVEDG--TITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRA 163 (413)
T ss_pred hh--cCCceEEEEechhhhCHHHHHHHHHHhhcC--cEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHH
Confidence 21 246789999999999999999999999863 35555554 4455899999999999999999999998888763
No 91
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=2.2e-16 Score=162.71 Aligned_cols=163 Identities=19% Similarity=0.296 Sum_probs=124.8
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+||++++|||+|+.+++|+|||+|||+.|+|++++.+++..||.+++.++|+.++++++..+++.++||+|+|++.|+
T Consensus 141 LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLd 220 (535)
T PRK08451 141 LEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLD 220 (535)
T ss_pred HhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhhccccc-----------hhH----HHHHhc--hHHHHh----hcC---------CChhh
Q psy4285 81 SAATAHADEVNEDTIFTLLVSRVEKYR-----------PST----LDELVS--HQDIIS----TIE---------IPESM 130 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~~ek~~-----------~~~----l~~lls--~~~~l~----~l~---------~~~~~ 130 (533)
.+.....+.||.+.+.++++....... ... +.++.+ ...++. .++ .....
T Consensus 221 qai~~~~~~It~~~V~~~lg~~~~~~I~~li~ai~~~d~~~a~~~l~~L~g~~~~~~l~~l~~~l~~~~~~~~~~~~l~~ 300 (535)
T PRK08451 221 QAIIYCKNAITESKVADMLGLLDPSKLEDFFQAILNQDKEKLFELLKELEDYEAEMVLDEMMLFLKEKFLSKDSEFSILL 300 (535)
T ss_pred HHHHhcCCCCCHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhcccccccHHH
Confidence 887755557888887766553221111 111 111110 001111 010 11122
Q ss_pred HHHHHhhccCccccccCCCChhhHHHHHHHHHh
Q psy4285 131 LVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163 (533)
Q Consensus 131 ~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~ 163 (533)
+.+.+..++.+...+..|.++.+++++++.++.
T Consensus 301 l~r~~riL~~~k~~l~~g~~~~i~l~~~~~~~~ 333 (535)
T PRK08451 301 YERFFRILSSAKSLLKEGADDGFVLLLMLFKMK 333 (535)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345556677888899999999999999998876
No 92
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.69 E-value=9.5e-16 Score=142.47 Aligned_cols=125 Identities=14% Similarity=0.119 Sum_probs=100.9
Q ss_pred CCCc-eeEeCCCCCChHHHHHHHHHHHccccccC----------------cceEEecC-CCCCchhHHHHHHHHHHhccc
Q psy4285 305 ELPH-LLFYGPPGTGKTTTILACARKLYTKAQFN----------------AMVLELNA-SDDRGIGIVRDQIFQFASTKT 366 (533)
Q Consensus 305 ~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~----------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 366 (533)
..|| +||+||+|+||..+|.++|+.+.|....+ ..+..+.+ ....+.+.+++..+.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s- 83 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPS- 83 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCc-
Confidence 3456 89999999999999999999998864211 12222222 22356778888877765332
Q ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCC
Q psy4285 367 MHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430 (533)
Q Consensus 367 ~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~ 430 (533)
...++++|+|||++|+|+.+++|+|++++||||+++.||++|+.++.++|+++|||..+.|+++
T Consensus 84 ~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~ 147 (261)
T PRK05818 84 VESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSK 147 (261)
T ss_pred hhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCCh
Confidence 1124689999999999999999999999999999999999999999999999999999999887
No 93
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.69 E-value=1.2e-16 Score=162.50 Aligned_cols=108 Identities=25% Similarity=0.385 Sum_probs=100.1
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
+||||.+++|||+|+.+++|.+||+||||.|.|++++.++|...|..|+.+|++.++++++..+++.++|++|.++++|+
T Consensus 143 LEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLD 222 (515)
T COG2812 143 LEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLD 222 (515)
T ss_pred cccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhhccccch
Q psy4285 81 SAATAHADEVNEDTIFTLLVSRVEKYRP 108 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~~ek~~~ 108 (533)
++....++.||.+.+.+++|.....+..
T Consensus 223 q~i~~~~~~It~~~v~~~lG~~~~~~~~ 250 (515)
T COG2812 223 QAIAFGEGEITLESVRDMLGLTDIEKLL 250 (515)
T ss_pred HHHHccCCcccHHHHHHHhCCCCHHHHH
Confidence 9988766779999998888765444333
No 94
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.68 E-value=5.4e-16 Score=166.45 Aligned_cols=145 Identities=23% Similarity=0.283 Sum_probs=106.7
Q ss_pred hhchhhh---hhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhc
Q psy4285 288 NESMDLC---YKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364 (533)
Q Consensus 288 ~~~~~~~---~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (533)
.|+++.+ ..+.+++..+..++++|+|||||||||+|+++++.+ ...++.+++.. .+...+++.+......
T Consensus 31 vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~------~~~f~~lna~~-~~i~dir~~i~~a~~~ 103 (725)
T PRK13341 31 VGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT------RAHFSSLNAVL-AGVKDLRAEVDRAKER 103 (725)
T ss_pred cCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh------cCcceeehhhh-hhhHHHHHHHHHHHHH
Confidence 3566655 356777788888899999999999999999999986 44556666654 3334444444433221
Q ss_pred ccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEe--CCCCCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 365 KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC--NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 365 ~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~--n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
... .....+|||||+|+++...+++|+..+++. .+.+|.+| |....++++++|||..+.|.+++.+++..++.+.
T Consensus 104 l~~-~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g--~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~ 180 (725)
T PRK13341 104 LER-HGKRTILFIDEVHRFNKAQQDALLPWVENG--TITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRA 180 (725)
T ss_pred hhh-cCCceEEEEeChhhCCHHHHHHHHHHhcCc--eEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHH
Confidence 111 135679999999999999999999999752 34445444 4445789999999999999999999988888664
No 95
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.67 E-value=2.7e-15 Score=154.28 Aligned_cols=151 Identities=17% Similarity=0.132 Sum_probs=110.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC------CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD------RGIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
.+||+||||||||++|+++|+++ +.+++.++.+.. .+...+++.+..... ..++||+|||+|
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~------~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~------~~P~IL~IDEID 328 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDW------QLPLLRLDVGKLFGGIVGESESRMRQMIRIAEA------LSPCILWIDEID 328 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHh------CCCEEEEEhHHhcccccChHHHHHHHHHHHHHh------cCCcEEEehhhh
Confidence 49999999999999999999998 667777776432 233445554433221 356899999999
Q ss_pred CCCHH------------HHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcC----
Q psy4285 382 AMTND------------AQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYD---- 442 (533)
Q Consensus 382 ~l~~~------------~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~---- 442 (533)
.+... ..+.|+..|++....+.+|+|||.++.+|+++++ ||+ .+.++.|+.++..+++...
T Consensus 329 ~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~ 408 (489)
T CHL00195 329 KAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF 408 (489)
T ss_pred hhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc
Confidence 87431 2345677777766778899999999999999987 895 6777888888888887755
Q ss_pred -H-----HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy4285 443 -D-----ISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVH 479 (533)
Q Consensus 443 -~-----~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~ 479 (533)
| .++..+.+ .+.||++.||...+.++..
T Consensus 409 ~~~~~~~~dl~~La~---------~T~GfSGAdI~~lv~eA~~ 442 (489)
T CHL00195 409 RPKSWKKYDIKKLSK---------LSNKFSGAEIEQSIIEAMY 442 (489)
T ss_pred CCCcccccCHHHHHh---------hcCCCCHHHHHHHHHHHHH
Confidence 1 11222222 6789999999887776654
No 96
>KOG0738|consensus
Probab=99.67 E-value=2.8e-16 Score=149.55 Aligned_cols=149 Identities=22% Similarity=0.255 Sum_probs=106.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
.+|++||||||||.+|+++|.++ +..|+.++.++.. +++.+|- +...+... .+.+|||||||
T Consensus 247 gvLm~GPPGTGKTlLAKAvATEc------~tTFFNVSsstltSKwRGeSEKlvRl-LFemARfy-----APStIFiDEID 314 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATEC------GTTFFNVSSSTLTSKWRGESEKLVRL-LFEMARFY-----APSTIFIDEID 314 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHhh------cCeEEEechhhhhhhhccchHHHHHH-HHHHHHHh-----CCceeehhhHH
Confidence 49999999999999999999998 7788888877642 2333433 33333321 45799999999
Q ss_pred CCCH------------HHHHHHHHHHHhc------CCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC-
Q psy4285 382 AMTN------------DAQNALRRIIEKF------TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD- 442 (533)
Q Consensus 382 ~l~~------------~~~~~Ll~~le~~------~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~- 442 (533)
.+.. ...+.||-.|+.- ...+.++.+||.|..||+++++||.+-.+-|+|+.+.+.-|.++
T Consensus 315 slcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~ 394 (491)
T KOG0738|consen 315 SLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKIL 394 (491)
T ss_pred HHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHh
Confidence 9843 2356788888732 22356666789999999999999976666666666666666555
Q ss_pred --------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy4285 443 --------DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLL 477 (533)
Q Consensus 443 --------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~ 477 (533)
|-.+..+.+ ..+|||+.||...+.++
T Consensus 395 l~~~~~~~~~~~~~lae---------~~eGySGaDI~nvCreA 428 (491)
T KOG0738|consen 395 LRSVELDDPVNLEDLAE---------RSEGYSGADITNVCREA 428 (491)
T ss_pred hccccCCCCccHHHHHH---------HhcCCChHHHHHHHHHH
Confidence 333444444 67899999998777654
No 97
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.8e-16 Score=163.67 Aligned_cols=102 Identities=23% Similarity=0.386 Sum_probs=93.9
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||||+++++|||+||++++|++||+|||+.|+|++++.+++.++|++++.++++.++++++..|++.++||+|+|+++++
T Consensus 148 LEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLd 227 (700)
T PRK12323 148 LEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTD 227 (700)
T ss_pred hccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhCCCCcchhhHHhhhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLVSR 102 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~ 102 (533)
.+.......|+.+.|.++++..
T Consensus 228 Qaia~~~~~It~~~V~~~LG~~ 249 (700)
T PRK12323 228 QAIAYSAGNVSEEAVRGMLGAI 249 (700)
T ss_pred HHHHhccCCcCHHHHHHHhCCC
Confidence 8765555578888887776643
No 98
>KOG0734|consensus
Probab=99.66 E-value=5e-16 Score=153.09 Aligned_cols=179 Identities=20% Similarity=0.201 Sum_probs=123.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC------CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD------RGIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
.+||+||||||||.+||++|-+. +.+|+...+++. .+...+|+++..... ..++||||||+|
T Consensus 339 GVLLvGPPGTGKTlLARAvAGEA------~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~------~APcIIFIDEiD 406 (752)
T KOG0734|consen 339 GVLLVGPPGTGKTLLARAVAGEA------GVPFFYASGSEFDEMFVGVGARRVRDLFAAAKA------RAPCIIFIDEID 406 (752)
T ss_pred ceEEeCCCCCchhHHHHHhhccc------CCCeEeccccchhhhhhcccHHHHHHHHHHHHh------cCCeEEEEechh
Confidence 39999999999999999999887 888898888863 466778877655432 357999999999
Q ss_pred CCCHH-----------HHHHHHHHHHhc--CCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcC---
Q psy4285 382 AMTND-----------AQNALRRIIEKF--TTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYD--- 442 (533)
Q Consensus 382 ~l~~~-----------~~~~Ll~~le~~--~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~--- 442 (533)
.+... ..|.|+--|+.+ ...+.+|.+||.++.||++|.+ ||+ .+..+.|+..-..++|...
T Consensus 407 avG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k 486 (752)
T KOG0734|consen 407 AVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK 486 (752)
T ss_pred hhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc
Confidence 98531 224444445533 4568888899999999999999 995 7777778877777777665
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhCCCCh
Q psy4285 443 -----DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSE 508 (533)
Q Consensus 443 -----~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 508 (533)
.-|..-+.. .+.|+++.|+.+-+..+..+...++.... -+..+.....|+-.|+..
T Consensus 487 i~~~~~VD~~iiAR---------GT~GFsGAdLaNlVNqAAlkAa~dga~~V-tM~~LE~akDrIlMG~ER 547 (752)
T KOG0734|consen 487 IPLDEDVDPKIIAR---------GTPGFSGADLANLVNQAALKAAVDGAEMV-TMKHLEFAKDRILMGPER 547 (752)
T ss_pred CCcccCCCHhHhcc---------CCCCCchHHHHHHHHHHHHHHHhcCcccc-cHHHHhhhhhheeecccc
Confidence 112222222 77899999988777665444333332221 123444455566666543
No 99
>KOG0727|consensus
Probab=99.63 E-value=4.7e-15 Score=133.29 Aligned_cols=164 Identities=28% Similarity=0.379 Sum_probs=110.6
Q ss_pred CCccccccccCCCC--HHHHHHHHHHHhhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcc
Q psy4285 262 VNEDTVYNSVGYPT--KTEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAM 339 (533)
Q Consensus 262 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~ 339 (533)
..++..|.+.|... .+.+.+... +...+.++.+++. -..+..+|+|||||||||.+++++|+.- ...
T Consensus 148 ekpdvsy~diggld~qkqeireave-lplt~~~ly~qig----idpprgvllygppg~gktml~kava~~t------~a~ 216 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVE-LPLTHADLYKQIG----IDPPRGVLLYGPPGTGKTMLAKAVANHT------TAA 216 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHh-ccchHHHHHHHhC----CCCCcceEEeCCCCCcHHHHHHHHhhcc------chh
Confidence 35566788888754 334444432 2222333333332 2223349999999999999999999875 678
Q ss_pred eEEecCCC------CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHh-----
Q psy4285 340 VLELNASD------DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN-----------DAQNALRRIIEK----- 397 (533)
Q Consensus 340 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~~~~Ll~~le~----- 397 (533)
++.+.+++ +.+...++..++- +. ++.+.++||||+|.+.. +.|..|+.++..
T Consensus 217 firvvgsefvqkylgegprmvrdvfrl-ak-----enapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfd 290 (408)
T KOG0727|consen 217 FIRVVGSEFVQKYLGEGPRMVRDVFRL-AK-----ENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFD 290 (408)
T ss_pred eeeeccHHHHHHHhccCcHHHHHHHHH-Hh-----ccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcC
Confidence 88888876 2344445544332 22 24678999999998843 456666666653
Q ss_pred cCCCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhhcC
Q psy4285 398 FTTNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 398 ~~~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~~ 442 (533)
...|+.+|++||+.+.+||++++ |+ .++.|+-|+..+-+-+...+
T Consensus 291 q~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~ti 338 (408)
T KOG0727|consen 291 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTI 338 (408)
T ss_pred cccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhh
Confidence 35789999999999999999998 77 48899877766655554444
No 100
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.62 E-value=4.8e-15 Score=146.58 Aligned_cols=141 Identities=17% Similarity=0.255 Sum_probs=102.8
Q ss_pred hhchhhhhhhccccc-----ccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHH
Q psy4285 288 NESMDLCYKINRFID-----ENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~-----~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (533)
.|+++..+.+..++. .+..++++|+||||||||++|+++|+.+ +..+....++.......+...+...
T Consensus 7 iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~------~~~~~~~~~~~~~~~~~l~~~l~~~- 79 (305)
T TIGR00635 7 IGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM------GVNLKITSGPALEKPGDLAAILTNL- 79 (305)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh------CCCEEEeccchhcCchhHHHHHHhc-
Confidence 456666666666554 2345579999999999999999999988 3333333333222222333322221
Q ss_pred hcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC------------------CCcEEEEEeCCCCCCChhhhccc-e
Q psy4285 363 STKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFT------------------TNVRFCIICNYLSKIPPAIQSRC-T 423 (533)
Q Consensus 363 ~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~------------------~~~~~I~~~n~~~~l~~~l~sR~-~ 423 (533)
..+.+|||||++.++...++.|+.++++.. +...+|.+||.+..++++++||| .
T Consensus 80 -------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~ 152 (305)
T TIGR00635 80 -------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGI 152 (305)
T ss_pred -------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcce
Confidence 245799999999999999999998887432 23678888899999999999999 4
Q ss_pred eeeecCCCHHHHHHHhhcC
Q psy4285 424 RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 424 ~i~~~~~~~~~~~~~l~~~ 442 (533)
.+.|.+++.+++.+++.+.
T Consensus 153 ~~~l~~l~~~e~~~il~~~ 171 (305)
T TIGR00635 153 ILRLEFYTVEELAEIVSRS 171 (305)
T ss_pred EEEeCCCCHHHHHHHHHHH
Confidence 6799999999999999876
No 101
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=2.1e-15 Score=158.71 Aligned_cols=101 Identities=24% Similarity=0.437 Sum_probs=93.7
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++++|||+|+.+++|++||+|||+.|+|++++.+++.++|++++.++++.++++++..|+..|+||+|+|+++++
T Consensus 143 LEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lld 222 (647)
T PRK07994 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTD 222 (647)
T ss_pred HHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLVS 101 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~ 101 (533)
.+....+..|+.+.+.++++.
T Consensus 223 qaia~~~~~it~~~v~~~lg~ 243 (647)
T PRK07994 223 QAIASGNGQVTTDDVSAMLGT 243 (647)
T ss_pred HHHHhcCCCcCHHHHHHHHcc
Confidence 887655557888888776654
No 102
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.62 E-value=2.1e-14 Score=143.02 Aligned_cols=141 Identities=16% Similarity=0.220 Sum_probs=102.1
Q ss_pred hhchhhhhhhccccc-----ccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHH
Q psy4285 288 NESMDLCYKINRFID-----ENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~-----~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (533)
.|+++....+..++. ....++++|+||||||||++|+++|+.+ +..+...+++.......+...+...
T Consensus 28 vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l------~~~~~~~~~~~~~~~~~l~~~l~~l- 100 (328)
T PRK00080 28 IGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM------GVNIRITSGPALEKPGDLAAILTNL- 100 (328)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh------CCCeEEEecccccChHHHHHHHHhc-
Confidence 355555555544433 2234579999999999999999999998 3334444443322333333332221
Q ss_pred hcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC------------------CCcEEEEEeCCCCCCChhhhccc-e
Q psy4285 363 STKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFT------------------TNVRFCIICNYLSKIPPAIQSRC-T 423 (533)
Q Consensus 363 ~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~------------------~~~~~I~~~n~~~~l~~~l~sR~-~ 423 (533)
..+++|||||+|.++...++.|+.+++++. +...+|++||....++++++||| .
T Consensus 101 -------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~ 173 (328)
T PRK00080 101 -------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGI 173 (328)
T ss_pred -------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCe
Confidence 346799999999999888888888887542 23678889999999999999999 5
Q ss_pred eeeecCCCHHHHHHHhhcC
Q psy4285 424 RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 424 ~i~~~~~~~~~~~~~l~~~ 442 (533)
.+.|.+++.+++.+++.+.
T Consensus 174 ~~~l~~~~~~e~~~il~~~ 192 (328)
T PRK00080 174 VQRLEFYTVEELEKIVKRS 192 (328)
T ss_pred eeecCCCCHHHHHHHHHHH
Confidence 7899999999999999876
No 103
>KOG0739|consensus
Probab=99.62 E-value=1.3e-15 Score=140.01 Aligned_cols=144 Identities=22% Similarity=0.273 Sum_probs=108.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
.+||||||||||+.+|+++|.+. +..++.++.++.. +.+.+++++.. +. +..+.|+||||+|
T Consensus 168 giLLyGPPGTGKSYLAKAVATEA------nSTFFSvSSSDLvSKWmGESEkLVknLFem-AR-----e~kPSIIFiDEiD 235 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKWMGESEKLVKNLFEM-AR-----ENKPSIIFIDEID 235 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhc------CCceEEeehHHHHHHHhccHHHHHHHHHHH-HH-----hcCCcEEEeehhh
Confidence 39999999999999999999987 6788888887742 33344443322 21 2467899999999
Q ss_pred CCCHH-----------HHHHHHHHHHh---cCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC-----
Q psy4285 382 AMTND-----------AQNALRRIIEK---FTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD----- 442 (533)
Q Consensus 382 ~l~~~-----------~~~~Ll~~le~---~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~----- 442 (533)
.+... ....|+-.|.. -...+.++.+||-+..||.+|++||..-.+-|+++...+..+.++
T Consensus 236 slcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~t 315 (439)
T KOG0739|consen 236 SLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDT 315 (439)
T ss_pred hhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCC
Confidence 88531 12234444442 245677888899999999999999988888899999999998887
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q psy4285 443 -----DISFFNIIIWYIKIQEIKIEKGLALTDILT 472 (533)
Q Consensus 443 -----~~~~~~ll~~~~~l~~l~~~~~~~~~di~~ 472 (533)
..+++++.. .+.|||+.||.-
T Consensus 316 p~~LT~~d~~eL~~---------kTeGySGsDisi 341 (439)
T KOG0739|consen 316 PHVLTEQDFKELAR---------KTEGYSGSDISI 341 (439)
T ss_pred ccccchhhHHHHHh---------hcCCCCcCceEE
Confidence 566777666 788999988643
No 104
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.61 E-value=1.2e-14 Score=139.96 Aligned_cols=133 Identities=18% Similarity=0.235 Sum_probs=92.0
Q ss_pred CCCceeEeCCCCCChHHHHHHHHHHHccccc-cCcceEEecCCCCCchh--HHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQ-FNAMVLELNASDDRGIG--IVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 305 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
..+|++|+||||||||++|+++|+.+..... ....++.+++++..+.. .....+...... ...+||||||+|
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~-----a~~~VL~IDE~~ 115 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKK-----ALGGVLFIDEAY 115 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHh-----ccCCEEEEechh
Confidence 3457999999999999999999998743221 12345555554432211 001111111111 234699999999
Q ss_pred CCC--------HHHHHHHHHHHHhcCCCcEEEEEeCCCC-----CCChhhhccc-eeeeecCCCHHHHHHHhhcC
Q psy4285 382 AMT--------NDAQNALRRIIEKFTTNVRFCIICNYLS-----KIPPAIQSRC-TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 382 ~l~--------~~~~~~Ll~~le~~~~~~~~I~~~n~~~-----~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~ 442 (533)
.+. .+.++.|++.+++...++.+|++++... .++|+++||| ..+.|++++.+++.+++.+.
T Consensus 116 ~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~ 190 (261)
T TIGR02881 116 SLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERM 190 (261)
T ss_pred hhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHH
Confidence 975 3567889999998777777777764332 4789999999 57999999999999888766
No 105
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.61 E-value=9.9e-14 Score=154.05 Aligned_cols=153 Identities=20% Similarity=0.272 Sum_probs=104.5
Q ss_pred HHhhhchhhhhhhccccccc--------CC-CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHH
Q psy4285 285 WLLNESMDLCYKINRFIDEN--------EL-PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355 (533)
Q Consensus 285 ~~~~~~~~~~~~l~~~~~~~--------~~-~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (533)
..+.||+.++..+...+... ++ ..++|+||||||||++|+++++.+++. ...++.++.+.........
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~---~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD---EDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC---CCcEEEEechhhcccchHH
Confidence 34566776666665555432 12 238999999999999999999998765 3456666665432222111
Q ss_pred HHHH------------HHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCCC
Q psy4285 356 DQIF------------QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNYLS 412 (533)
Q Consensus 356 ~~~~------------~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~~ 412 (533)
..++ .+.... ...++.||+|||+++++++.++.|+++|++. -.++.||+|||...
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v--~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~ 719 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAV--RRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGS 719 (852)
T ss_pred HhcCCCCCccCcccccHHHHHH--HcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcch
Confidence 1110 000000 0134679999999999999999999999875 25677999998722
Q ss_pred -------------------------CCChhhhccc-eeeeecCCCHHHHHHHhhcC
Q psy4285 413 -------------------------KIPPAIQSRC-TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 413 -------------------------~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~ 442 (533)
.+.|.+..|+ ..+.|.|++.+++.+++...
T Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~ 775 (852)
T TIGR03346 720 QFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQ 775 (852)
T ss_pred HhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHH
Confidence 2457788888 58899999999988887665
No 106
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.61 E-value=4.1e-15 Score=139.87 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=96.0
Q ss_pred CCceEEEEEc--CCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhc------CCCCCHHHHHHHHHhcCCCHHHHH
Q psy4285 5 TTNVRFCIIC--NYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQE------KVNVTPDGKKAIIDLSDGDMRKVL 76 (533)
Q Consensus 5 ~~~~~~il~~--~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~g~~r~a~ 76 (533)
.+.+.+|-+| ||++.|+|+|+|||++|.|++++.+++...|++++..+ ++.+++++++.|+..|+||.|+|+
T Consensus 6 ~G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aL 85 (300)
T PRK14700 6 SGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKIL 85 (300)
T ss_pred CCcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHH
Confidence 4667777777 99999999999999999999999999999999998742 367999999999999999999999
Q ss_pred HHHHHHHHhC-C-C--CcchhhHHhhhhhhccccchh--HHHHHhchH
Q psy4285 77 NILQSAATAH-A-D--EVNEDTIFTLLVSRVEKYRPS--TLDELVSHQ 118 (533)
Q Consensus 77 ~~l~~~~~~~-~-~--~i~~~~i~~~~~~~~ek~~~~--~l~~lls~~ 118 (533)
|.||.++... . . .||.+.+.+.++.....|+.+ .||+++|-.
T Consensus 86 N~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf 133 (300)
T PRK14700 86 NLLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAF 133 (300)
T ss_pred HHHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHH
Confidence 9999976522 1 1 289999988888777777754 799998643
No 107
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.60 E-value=1.2e-14 Score=147.39 Aligned_cols=150 Identities=24% Similarity=0.327 Sum_probs=105.3
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
.+++|+||||||||++|+++|+.+ +..++.+++++.. +...++..+.... ...++||||||+
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~~------~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~------~~~p~IlfiDEi 233 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSELVQKFIGEGARLVRELFELAR------EKAPSIIFIDEI 233 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHHh------CCCEEEeehHHHhHhhccchHHHHHHHHHHHH------hcCCeEEEEech
Confidence 459999999999999999999987 5566777665431 2223333322211 134679999999
Q ss_pred CCCC-----------HHHHHHHHHHHHh-----cCCCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhhc
Q psy4285 381 DAMT-----------NDAQNALRRIIEK-----FTTNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 381 d~l~-----------~~~~~~Ll~~le~-----~~~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~ 441 (533)
|.+. .+.+..+.+++.+ ...++.+|++||.++.+++++++ || ..+.|++|+.++..+++..
T Consensus 234 D~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~ 313 (389)
T PRK03992 234 DAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKI 313 (389)
T ss_pred hhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHH
Confidence 9983 3344555555543 13478899999999999999997 88 4799999999999998886
Q ss_pred C------H--HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy4285 442 D------D--ISFFNIIIWYIKIQEIKIEKGLALTDILTEISLL 477 (533)
Q Consensus 442 ~------~--~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~ 477 (533)
. + .++..+.. .+.|+++.|+..-+.++
T Consensus 314 ~~~~~~~~~~~~~~~la~---------~t~g~sgadl~~l~~eA 348 (389)
T PRK03992 314 HTRKMNLADDVDLEELAE---------LTEGASGADLKAICTEA 348 (389)
T ss_pred HhccCCCCCcCCHHHHHH---------HcCCCCHHHHHHHHHHH
Confidence 5 1 12333333 66789988877655444
No 108
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.60 E-value=6.2e-15 Score=141.98 Aligned_cols=126 Identities=15% Similarity=0.153 Sum_probs=94.8
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC------CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCC
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD------RGIGIVRDQIFQFASTKTMHKSSYKLIILDEADA 382 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~ 382 (533)
++||||||||||.+|+++|+++ +..++.+++++. .+...+++.+........ ....++||||||+|.
T Consensus 151 llL~GPPGcGKTllAraiA~el------g~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~-~~~aPcVLFIDEIDA 223 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKM------GIEPIVMSAGELESENAGEPGKLIRQRYREAADIIK-KKGKMSCLFINDLDA 223 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHc------CCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhh-ccCCCeEEEEehhhh
Confidence 8999999999999999999998 777888887653 345667776655443210 124689999999998
Q ss_pred CCHH-----------H-HHHHHHHHHh--------------cCCCcEEEEEeCCCCCCChhhhc--cceeeeecCCCHHH
Q psy4285 383 MTND-----------A-QNALRRIIEK--------------FTTNVRFCIICNYLSKIPPAIQS--RCTRFRFGPLDSSL 434 (533)
Q Consensus 383 l~~~-----------~-~~~Ll~~le~--------------~~~~~~~I~~~n~~~~l~~~l~s--R~~~i~~~~~~~~~ 434 (533)
+.+. . ...|+..++. ....+.+|.|||+++.|+|+|++ ||+... ..|+.++
T Consensus 224 ~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i-~lPd~e~ 302 (413)
T PLN00020 224 GAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY-WAPTRED 302 (413)
T ss_pred cCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee-CCCCHHH
Confidence 8542 1 1346666553 24568899999999999999999 998754 4788888
Q ss_pred HHHHhhcC
Q psy4285 435 IMSRLDYD 442 (533)
Q Consensus 435 ~~~~l~~~ 442 (533)
..+++..+
T Consensus 303 R~eIL~~~ 310 (413)
T PLN00020 303 RIGVVHGI 310 (413)
T ss_pred HHHHHHHH
Confidence 88888765
No 109
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.4e-14 Score=148.58 Aligned_cols=157 Identities=22% Similarity=0.296 Sum_probs=117.2
Q ss_pred HHHHhhhchhhhhhhccccccc-------CCC--ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhH
Q psy4285 283 LRWLLNESMDLCYKINRFIDEN-------ELP--HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGI 353 (533)
Q Consensus 283 l~~~~~~~~~~~~~l~~~~~~~-------~~~--~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 353 (533)
+...+.||++++..+...+... +.| .++|.||+|+|||.+|+++|..+++. ...++.++.|+......
T Consensus 489 L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~---e~aliR~DMSEy~EkHs 565 (786)
T COG0542 489 LKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD---EQALIRIDMSEYMEKHS 565 (786)
T ss_pred HhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC---CccceeechHHHHHHHH
Confidence 3345578888887776665532 223 38999999999999999999999776 46788888888766666
Q ss_pred HHHHHHHHHhccc----------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCCC
Q psy4285 354 VRDQIFQFASTKT----------MHKSSYKLIILDEADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNYLS 412 (533)
Q Consensus 354 ~~~~~~~~~~~~~----------~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~~ 412 (533)
+..+++.-...-. ....+++|+++||+++..++..+.|+++|+.. -.|+.+|+|||.-.
T Consensus 566 VSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs 645 (786)
T COG0542 566 VSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGS 645 (786)
T ss_pred HHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccch
Confidence 6655443111100 01246899999999999999999999999864 26788999997321
Q ss_pred ----------------------------CCChhhhccce-eeeecCCCHHHHHHHhhcC
Q psy4285 413 ----------------------------KIPPAIQSRCT-RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 413 ----------------------------~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~ 442 (533)
.+.|.++.|++ .+.|.+++.+.+.+++...
T Consensus 646 ~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~ 704 (786)
T COG0542 646 EEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQ 704 (786)
T ss_pred HHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHH
Confidence 25677888886 9999999999888887766
No 110
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=5.2e-15 Score=153.54 Aligned_cols=111 Identities=20% Similarity=0.334 Sum_probs=99.6
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+||++++|||+|+.++++++||+|||++++|++++.+++.++|.++++++++.++++++..++..++||+|+|+|+|+
T Consensus 143 LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 143 LEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred HhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhhccccchhHHHHHh
Q psy4285 81 SAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELV 115 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~~ek~~~~~l~~ll 115 (533)
.+....++.|+.+.+.++++. +..+.+++++
T Consensus 223 k~i~~~~~~It~~~V~~~l~~----~~~~~v~~ll 253 (546)
T PRK14957 223 QAISFCGGELKQAQIKQMLGI----IDSEEVYSII 253 (546)
T ss_pred HHHHhccCCCCHHHHHHHHcc----CCHHHHHHHH
Confidence 987765667999888877664 2344555554
No 111
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=4.7e-15 Score=158.18 Aligned_cols=100 Identities=21% Similarity=0.355 Sum_probs=91.1
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++++|||+|+++.+|++||+|||++|+|++++.+++..+|++++.++++.++++++..|++.++||+|+|+++++
T Consensus 143 LEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLd 222 (944)
T PRK14949 143 LEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTD 222 (944)
T ss_pred HhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhCCCCcchhhHHhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLV 100 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~ 100 (533)
.+.....+.++.+.+.++++
T Consensus 223 Qala~~~~~It~~~V~~llG 242 (944)
T PRK14949 223 QAIAFGGGQVMLTQVQTMLG 242 (944)
T ss_pred HHHHhcCCcccHHHHHHHhC
Confidence 87765555677776655443
No 112
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4e-15 Score=154.67 Aligned_cols=105 Identities=18% Similarity=0.294 Sum_probs=96.3
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++++|||+|+.++++++||+|||++|+|++++.+++..+|+++++++|+.++++++..+++.++||+|.|+++|+
T Consensus 143 LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLd 222 (509)
T PRK14958 143 LEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLD 222 (509)
T ss_pred HhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhCCCCcchhhHHhhhhhhccc
Q psy4285 81 SAATAHADEVNEDTIFTLLVSRVEK 105 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~~ek 105 (533)
.+.....+.|+.+.|.++++...+.
T Consensus 223 q~ia~~~~~It~~~V~~~lg~~~~~ 247 (509)
T PRK14958 223 QSIAYGNGKVLIADVKTMLGTIEPL 247 (509)
T ss_pred HHHhcCCCCcCHHHHHHHHCCCCHH
Confidence 8776555679999998877654433
No 113
>CHL00181 cbbX CbbX; Provisional
Probab=99.58 E-value=3.4e-14 Score=137.51 Aligned_cols=132 Identities=21% Similarity=0.249 Sum_probs=91.4
Q ss_pred CCceeEeCCCCCChHHHHHHHHHHHcccccc-CcceEEecCCCCCchhH--HHHHHHHHHhcccCCCCCcEEEEEeCCCC
Q psy4285 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQF-NAMVLELNASDDRGIGI--VRDQIFQFASTKTMHKSSYKLIILDEADA 382 (533)
Q Consensus 306 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~vliiDE~d~ 382 (533)
..|++|+||||||||++|+++++.+...+.. ...++.++.++..+... ........... ..++||||||++.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~-----a~ggVLfIDE~~~ 133 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKK-----AMGGVLFIDEAYY 133 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHH-----ccCCEEEEEccch
Confidence 3469999999999999999999987543221 22366666443211000 00001111111 2346999999998
Q ss_pred C---------CHHHHHHHHHHHHhcCCCcEEEEEeCCCC-----CCChhhhccce-eeeecCCCHHHHHHHhhcC
Q psy4285 383 M---------TNDAQNALRRIIEKFTTNVRFCIICNYLS-----KIPPAIQSRCT-RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 383 l---------~~~~~~~Ll~~le~~~~~~~~I~~~n~~~-----~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~ 442 (533)
+ ..+.++.|++.|+....++++|++++... ..+|+++|||. .+.|++++.+++.+++...
T Consensus 134 l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~ 208 (287)
T CHL00181 134 LYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIM 208 (287)
T ss_pred hccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHH
Confidence 7 45678899999998877888888875322 35699999995 8999999999999888776
No 114
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.58 E-value=2.7e-14 Score=143.94 Aligned_cols=151 Identities=24% Similarity=0.319 Sum_probs=102.8
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC------CchhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD------RGIGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
.+++|+||||||||++|+++|+.+ +..++.+.++.. .+...+++.+.... ...+.||||||+
T Consensus 180 kgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~------~~~P~ILfIDEI 247 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGSEFVQKYLGEGPRMVRDVFRLAR------ENAPSIIFIDEV 247 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHHHHhcchhHHHHHHHHHHHH------hcCCeEEEEECH
Confidence 359999999999999999999987 455666654331 12223333332221 135689999999
Q ss_pred CCCCH-----------HHHHHH---HHHHHh--cCCCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhhc
Q psy4285 381 DAMTN-----------DAQNAL---RRIIEK--FTTNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 381 d~l~~-----------~~~~~L---l~~le~--~~~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~ 441 (533)
|.+.. ..+..+ +..++. ...++.+|++||.++.+||++++ || ..+.|++|+.++...++..
T Consensus 248 D~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~ 327 (398)
T PTZ00454 248 DSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQT 327 (398)
T ss_pred hhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHH
Confidence 98732 223334 444443 23568899999999999999987 88 4789999999988887775
Q ss_pred C--------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy4285 442 D--------DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLV 478 (533)
Q Consensus 442 ~--------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~ 478 (533)
. ..++.+++. .+.|+++.|+..-+.++.
T Consensus 328 ~~~~~~l~~dvd~~~la~---------~t~g~sgaDI~~l~~eA~ 363 (398)
T PTZ00454 328 ITSKMNLSEEVDLEDFVS---------RPEKISAADIAAICQEAG 363 (398)
T ss_pred HHhcCCCCcccCHHHHHH---------HcCCCCHHHHHHHHHHHH
Confidence 5 112333333 677999998776655543
No 115
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=8.3e-15 Score=153.44 Aligned_cols=102 Identities=22% Similarity=0.275 Sum_probs=94.5
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++++|||+|+.+++|++||+|||++|+|++++.+++.+||.++++++++.++++++..+++.++||+|.|+|+|+
T Consensus 142 LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ld 221 (584)
T PRK14952 142 VEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLD 221 (584)
T ss_pred HhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CCCcchhhHHhhhhhh
Q psy4285 81 SAATAH-ADEVNEDTIFTLLVSR 102 (533)
Q Consensus 81 ~~~~~~-~~~i~~~~i~~~~~~~ 102 (533)
.+.... .+.||.+.+.++++..
T Consensus 222 ql~~~~~~~~It~~~v~~llg~~ 244 (584)
T PRK14952 222 QLLAGAADTHVTYQRALGLLGAT 244 (584)
T ss_pred HHHhccCCCCcCHHHHHHHHCCC
Confidence 987754 4569999887776653
No 116
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1.2e-14 Score=152.71 Aligned_cols=112 Identities=20% Similarity=0.349 Sum_probs=99.5
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++++|||+|+.++++++||+|||++|+|++++.+++.++|++++.++|+.++++++..|++.++||+|.++++++
T Consensus 148 LEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLd 227 (618)
T PRK14951 148 LEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTD 227 (618)
T ss_pred cccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhCCCCcchhhHHhhhhhhccccchhHHH
Q psy4285 81 SAATAHADEVNEDTIFTLLVSRVEKYRPSTLD 112 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~~ek~~~~~l~ 112 (533)
.+.......|+.+.|.++++...+.+...-++
T Consensus 228 q~ia~~~~~It~~~V~~~Lg~~~~~~i~~Lld 259 (618)
T PRK14951 228 QAIAFGSGQLQEAAVRQMLGSVDRSHVFRLID 259 (618)
T ss_pred HHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHH
Confidence 77665556799999988887655443333333
No 117
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.57 E-value=4.9e-14 Score=135.34 Aligned_cols=156 Identities=19% Similarity=0.189 Sum_probs=105.3
Q ss_pred hhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhH-H--------HHHHHHHHh-
Q psy4285 294 CYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGI-V--------RDQIFQFAS- 363 (533)
Q Consensus 294 ~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~- 363 (533)
.+.+..++..+. +++|+||||||||++|+++|+.+ +.+++.+++........ + ......+..
T Consensus 11 ~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~ 82 (262)
T TIGR02640 11 TSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKR------DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHN 82 (262)
T ss_pred HHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHH
Confidence 344445555544 79999999999999999999876 55666665543221111 0 000011100
Q ss_pred ---c----------ccCC--CCCcEEEEEeCCCCCCHHHHHHHHHHHHhc----------------CCCcEEEEEeCCCC
Q psy4285 364 ---T----------KTMH--KSSYKLIILDEADAMTNDAQNALRRIIEKF----------------TTNVRFCIICNYLS 412 (533)
Q Consensus 364 ---~----------~~~~--~~~~~vliiDE~d~l~~~~~~~Ll~~le~~----------------~~~~~~I~~~n~~~ 412 (533)
. .+.. ...+.+|++||+++++++.++.|+.+|++. +++.++|+|+|...
T Consensus 83 ~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~ 162 (262)
T TIGR02640 83 VVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVE 162 (262)
T ss_pred hhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcc
Confidence 0 0000 023469999999999999999999999753 13678999999753
Q ss_pred -----CCChhhhccceeeeecCCCHHHHHHHhhcC----HHHHHHHHHHHHHHH
Q psy4285 413 -----KIPPAIQSRCTRFRFGPLDSSLIMSRLDYD----DISFFNIIIWYIKIQ 457 (533)
Q Consensus 413 -----~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~----~~~~~~ll~~~~~l~ 457 (533)
.+++++++||..+.+..|+.++..+++... +..+..+++....+.
T Consensus 163 ~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~~~~~~~~~~iv~~~~~~R 216 (262)
T TIGR02640 163 YAGVHETQDALLDRLITIFMDYPDIDTETAILRAKTDVAEDSAATIVRLVREFR 216 (262)
T ss_pred ccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999875 444455555444444
No 118
>KOG0728|consensus
Probab=99.57 E-value=2.2e-14 Score=128.85 Aligned_cols=162 Identities=23% Similarity=0.410 Sum_probs=111.3
Q ss_pred ccccccccCCCCH--HHHHHHHHHHhhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceE
Q psy4285 264 EDTVYNSVGYPTK--TEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVL 341 (533)
Q Consensus 264 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~ 341 (533)
++..|...|.... +.+.+.+ .+...+.++.+.+.- ..+..+++|||||||||.+|+++|+.. ...++
T Consensus 142 PDStYeMiGgLd~QIkeIkEVI-eLPvKHPELF~aLGI----aQPKGvlLygppgtGktLlaraVahht------~c~fi 210 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVI-ELPVKHPELFEALGI----AQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFI 210 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHH-hccccCHHHHHhcCC----CCCcceEEecCCCCchhHHHHHHHhhc------ceEEE
Confidence 4446666666432 2334333 233344555444432 233459999999999999999999876 45678
Q ss_pred EecCCCC------CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHh-----cC
Q psy4285 342 ELNASDD------RGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN-----------DAQNALRRIIEK-----FT 399 (533)
Q Consensus 342 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~~~~Ll~~le~-----~~ 399 (533)
.+++++. .+...+++++-... +..+.++|+||+|.+.. +.|..++.++.+ ..
T Consensus 211 rvsgselvqk~igegsrmvrelfvmar------ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 211 RVSGSELVQKYIGEGSRMVRELFVMAR------EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred EechHHHHHHHhhhhHHHHHHHHHHHH------hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 8887752 33444555432221 23578999999999843 456666666543 36
Q ss_pred CCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhhcC
Q psy4285 400 TNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 400 ~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~~ 442 (533)
.++.+|++||+.+-+||++++ |. ..+.|+||+++...++|+-.
T Consensus 285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkih 330 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIH 330 (404)
T ss_pred cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHh
Confidence 789999999999999999998 77 58999999999888887654
No 119
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.57 E-value=2.8e-14 Score=149.75 Aligned_cols=150 Identities=25% Similarity=0.264 Sum_probs=104.8
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC------CchhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD------RGIGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
.++||+||||||||++|+++|.++ +.+++.+++++. .+...++..+..... ..++||||||+
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~------~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~------~~p~Il~iDEi 156 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEA------GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKK------NAPCIIFIDEI 156 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc------CCCeeeccHHHHHHHHhcccHHHHHHHHHHHHh------cCCCEEEEech
Confidence 359999999999999999999987 566777766542 223344444433221 34679999999
Q ss_pred CCCCHH--------------HHHHHHHHHHhc--CCCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhhc
Q psy4285 381 DAMTND--------------AQNALRRIIEKF--TTNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 381 d~l~~~--------------~~~~Ll~~le~~--~~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~ 441 (533)
|.+... ..+.|+..|+.. ..++.+|++||.++.+||++++ || ..+.++.|+.++..+++..
T Consensus 157 d~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~ 236 (495)
T TIGR01241 157 DAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKV 236 (495)
T ss_pred hhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHH
Confidence 998532 234566666543 3457889999999999999998 78 4788889998888888776
Q ss_pred C--------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy4285 442 D--------DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLL 477 (533)
Q Consensus 442 ~--------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~ 477 (533)
. ..++..+.+ .+.|+++.|+..-+.++
T Consensus 237 ~l~~~~~~~~~~l~~la~---------~t~G~sgadl~~l~~eA 271 (495)
T TIGR01241 237 HAKNKKLAPDVDLKAVAR---------RTPGFSGADLANLLNEA 271 (495)
T ss_pred HHhcCCCCcchhHHHHHH---------hCCCCCHHHHHHHHHHH
Confidence 5 112222222 56788888877666554
No 120
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=9.7e-15 Score=151.41 Aligned_cols=102 Identities=22% Similarity=0.352 Sum_probs=95.0
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+||++++|||+|+.+.++++||+|||++|+|++++.+++.++|+++++++++.++++++..|++.++||+|.|+|+|+
T Consensus 142 LEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLD 221 (702)
T PRK14960 142 LEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTD 221 (702)
T ss_pred HhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhCCCCcchhhHHhhhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLVSR 102 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~ 102 (533)
.+.....+.|+.+.|.++++..
T Consensus 222 QaIayg~g~IT~edV~~lLG~~ 243 (702)
T PRK14960 222 QAIAYGQGAVHHQDVKEMLGLI 243 (702)
T ss_pred HHHHhcCCCcCHHHHHHHhccC
Confidence 8766555679999998877743
No 121
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.57 E-value=9.5e-14 Score=134.58 Aligned_cols=126 Identities=20% Similarity=0.260 Sum_probs=90.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHcccccc-CcceEEecCCCCCc------hhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQF-NAMVLELNASDDRG------IGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
|++|+||||||||++|+++++.+...+.. ...++.+++++..+ ....++.+.. ...++|||||+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~---------a~~gvL~iDEi 130 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKR---------AMGGVLFIDEA 130 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHH---------ccCcEEEEech
Confidence 69999999999999999999988543321 22466666543211 1111221111 23479999999
Q ss_pred CCC---------CHHHHHHHHHHHHhcCCCcEEEEEeCCC--C---CCChhhhccc-eeeeecCCCHHHHHHHhhcC
Q psy4285 381 DAM---------TNDAQNALRRIIEKFTTNVRFCIICNYL--S---KIPPAIQSRC-TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 381 d~l---------~~~~~~~Ll~~le~~~~~~~~I~~~n~~--~---~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~ 442 (533)
+.+ ..+.++.|++.|+....++++|++++.. . .++|+++||| ..+.|++++.+++..++.+.
T Consensus 131 ~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~ 207 (284)
T TIGR02880 131 YYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLM 207 (284)
T ss_pred hhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHH
Confidence 987 3456789999999887788888887543 1 4589999999 58999999988888877665
No 122
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.2e-14 Score=148.75 Aligned_cols=103 Identities=25% Similarity=0.400 Sum_probs=96.4
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++++|||+|+...++.+||+|||+.+.|++++.+++.++|.++++++++.+++++++.|++.++||+|.|++.|+
T Consensus 140 LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLd 219 (491)
T PRK14964 140 LEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLE 219 (491)
T ss_pred HhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhhc
Q psy4285 81 SAATAHADEVNEDTIFTLLVSRV 103 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~~ 103 (533)
.+....++.||.+.|.++++...
T Consensus 220 qli~y~~~~It~e~V~~llg~~~ 242 (491)
T PRK14964 220 QAAIYSNNKISEKSVRDLLGCVD 242 (491)
T ss_pred HHHHhcCCCCCHHHHHHHHccCC
Confidence 98876666799999988776543
No 123
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.56 E-value=2e-14 Score=123.48 Aligned_cols=106 Identities=29% Similarity=0.366 Sum_probs=81.0
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCCCC
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEADA 382 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~ 382 (533)
++|+||||||||++|+.+|+.+ +..++.+++++.. ....+...+...... ..+.|++|||+|.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~vl~iDe~d~ 69 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKS-----AKPCVLFIDEIDK 69 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHT-----STSEEEEEETGGG
T ss_pred CEEECcCCCCeeHHHHHHHhhc------cccccccccccccccccccccccccccccccccc-----ccceeeeeccchh
Confidence 6899999999999999999998 6778888876543 122333333332211 1368999999999
Q ss_pred CCHHH-----------HHHHHHHHHhcCC---CcEEEEEeCCCCCCChhhh-ccceee
Q psy4285 383 MTNDA-----------QNALRRIIEKFTT---NVRFCIICNYLSKIPPAIQ-SRCTRF 425 (533)
Q Consensus 383 l~~~~-----------~~~Ll~~le~~~~---~~~~I~~~n~~~~l~~~l~-sR~~~i 425 (533)
+.... .+.|+..++.... ++.+|++||..+.++++++ +||...
T Consensus 70 l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~ 127 (132)
T PF00004_consen 70 LFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRR 127 (132)
T ss_dssp TSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEE
T ss_pred cccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEE
Confidence 98765 6788888887554 5899999999999999999 999643
No 124
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.56 E-value=3.5e-13 Score=149.00 Aligned_cols=152 Identities=20% Similarity=0.263 Sum_probs=102.5
Q ss_pred Hhhhchhhhhhhccccccc-------CC--CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHH
Q psy4285 286 LLNESMDLCYKINRFIDEN-------EL--PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356 (533)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~-------~~--~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (533)
.+.||+.++..+...+... .. ..++|+||||||||++|+++++.+++. +..++.++.++.........
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~---~~~~i~id~se~~~~~~~~~ 645 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS---DDAMVRIDMSEFMEKHSVSR 645 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC---CCcEEEEEhHHhhhhhhHHH
Confidence 3467777766665555432 11 248999999999999999999988654 33566666554322211111
Q ss_pred HHH------------HHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCC--
Q psy4285 357 QIF------------QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNYL-- 411 (533)
Q Consensus 357 ~~~------------~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~-- 411 (533)
.++ .+.... ...+++||+|||++++.++.++.|++++++. -.++.||+|||..
T Consensus 646 LiG~~pgy~g~~~~g~l~~~v--~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~ 723 (857)
T PRK10865 646 LVGAPPGYVGYEEGGYLTEAV--RRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSD 723 (857)
T ss_pred HhCCCCcccccchhHHHHHHH--HhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchH
Confidence 110 000000 0134579999999999999999999999864 2456699999863
Q ss_pred -----------------------CCCChhhhccc-eeeeecCCCHHHHHHHhhcC
Q psy4285 412 -----------------------SKIPPAIQSRC-TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 412 -----------------------~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~ 442 (533)
..+.|++++|+ ..+.|.|++.+++..++...
T Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~ 778 (857)
T PRK10865 724 LIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQ 778 (857)
T ss_pred HHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHH
Confidence 13567899999 68999999988877666554
No 125
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.4e-14 Score=151.71 Aligned_cols=103 Identities=20% Similarity=0.361 Sum_probs=94.9
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+|+++++|||+|+.+.++++||+|||+.|+|++++.+++..+|.+++.++++.++++++..|++.++||+|.|+++|+
T Consensus 143 LEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLD 222 (709)
T PRK08691 143 LEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLD 222 (709)
T ss_pred HHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhCCCCcchhhHHhhhhhhc
Q psy4285 81 SAATAHADEVNEDTIFTLLVSRV 103 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~~ 103 (533)
.+.......|+.+.|..+++...
T Consensus 223 qaia~g~g~It~e~V~~lLG~~d 245 (709)
T PRK08691 223 QAIALGSGKVAENDVRQMIGAVD 245 (709)
T ss_pred HHHHhcCCCcCHHHHHHHHcccC
Confidence 87765555799988877766543
No 126
>KOG0652|consensus
Probab=99.54 E-value=1.5e-13 Score=124.20 Aligned_cols=121 Identities=29% Similarity=0.475 Sum_probs=85.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCC------CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD------DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
.+|+|||||||||.+|++.|..- ...|+.+.++. +.+.+.++..+.- .. +..+.++||||+|
T Consensus 207 GvLmYGPPGTGKTlmARAcAaqT------~aTFLKLAgPQLVQMfIGdGAkLVRDAFaL---AK---EkaP~IIFIDElD 274 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLMARACAAQT------NATFLKLAGPQLVQMFIGDGAKLVRDAFAL---AK---EKAPTIIFIDELD 274 (424)
T ss_pred ceEeeCCCCCcHHHHHHHHHHhc------cchHHHhcchHHHhhhhcchHHHHHHHHHH---hh---ccCCeEEEEechh
Confidence 49999999999999999999765 44555554443 2345555554321 11 2467899999999
Q ss_pred CCCH-----------HHHHHHHHHHHh-----cCCCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhh
Q psy4285 382 AMTN-----------DAQNALRRIIEK-----FTTNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLD 440 (533)
Q Consensus 382 ~l~~-----------~~~~~Ll~~le~-----~~~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~ 440 (533)
.+.. +.|..++.++.+ +...+.+|.+||+.+-+||+|++ |+ .++.|+.|+++....++.
T Consensus 275 AIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQ 352 (424)
T KOG0652|consen 275 AIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQ 352 (424)
T ss_pred hhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHH
Confidence 8843 455555555543 34568899999999999999998 77 488887777665554443
No 127
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.5e-14 Score=153.11 Aligned_cols=102 Identities=27% Similarity=0.438 Sum_probs=95.3
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++++|||+||.+++|++||+|||++|+|++++.+++..+|..+++++|+.++++++..+++.++||+|.|++.|+
T Consensus 143 LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 143 LEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred HHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLVSR 102 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~ 102 (533)
.+....++.|+.+.+.++++..
T Consensus 223 qliay~g~~It~edV~~llG~~ 244 (576)
T PRK14965 223 QVLAFCGDAVGDDDVAELLGVV 244 (576)
T ss_pred HHHHhccCCCCHHHHHHHhCCC
Confidence 9877666679999887776643
No 128
>KOG0729|consensus
Probab=99.54 E-value=1.2e-13 Score=125.21 Aligned_cols=120 Identities=28% Similarity=0.425 Sum_probs=89.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC------CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD------RGIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
.+++|||||||||.+|+++|+.- +.+++.+-+++. .+...+++++. .+.+ .+.+++|+||+|
T Consensus 213 gvllygppgtgktl~aravanrt------dacfirvigselvqkyvgegarmvrelf~-mart-----kkaciiffdeid 280 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRT------DACFIRVIGSELVQKYVGEGARMVRELFE-MART-----KKACIIFFDEID 280 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhccc------CceEEeehhHHHHHHHhhhhHHHHHHHHH-Hhcc-----cceEEEEeeccc
Confidence 49999999999999999999875 788898887763 34444555433 2222 357899999999
Q ss_pred CCCH-----------HHHHHHHHHHHh-----cCCCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHh
Q psy4285 382 AMTN-----------DAQNALRRIIEK-----FTTNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 382 ~l~~-----------~~~~~Ll~~le~-----~~~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l 439 (533)
.+.. +.|..++.++.+ +..|+.++++||+++.+||+|++ |+ .++.|.-|+-+-...++
T Consensus 281 aiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~ 357 (435)
T KOG0729|consen 281 AIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIF 357 (435)
T ss_pred cccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeE
Confidence 8843 556667766653 46789999999999999999998 77 47777766654444433
No 129
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.4e-13 Score=144.94 Aligned_cols=159 Identities=19% Similarity=0.191 Sum_probs=113.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
.+||+||||||||++|+++|.++ +..++.+..++.. ....+++.+.... ...++||||||+|
T Consensus 278 giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~------~~~p~iiFiDEiD 345 (494)
T COG0464 278 GVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSELLSKWVGESEKNIRELFEKAR------KLAPSIIFIDEID 345 (494)
T ss_pred eeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHHHhccccchHHHHHHHHHHHHH------cCCCcEEEEEchh
Confidence 59999999999999999999977 7788888776533 2344555444332 2457899999999
Q ss_pred CCCH-----------HHHHHHHHHHH--hcCCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcCHHH
Q psy4285 382 AMTN-----------DAQNALRRIIE--KFTTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYDDIS 445 (533)
Q Consensus 382 ~l~~-----------~~~~~Ll~~le--~~~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~ 445 (533)
.+.. ...+.|+..++ +...++.+|.+||.++.+|+++++ ||+ .+.+++|+.++..+++.....+
T Consensus 346 s~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 346 SLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred hhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 9843 34566777775 445678899999999999999999 995 7777888888888887776211
Q ss_pred HHH-HHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy4285 446 FFN-IIIW--YIKIQEIKIEKGLALTDILTEISLLVHR 480 (533)
Q Consensus 446 ~~~-ll~~--~~~l~~l~~~~~~~~~di~~~~~~~~~~ 480 (533)
... +... ...+.. .+.|++..|+...+.++...
T Consensus 426 ~~~~~~~~~~~~~l~~--~t~~~sgadi~~i~~ea~~~ 461 (494)
T COG0464 426 KKPPLAEDVDLEELAE--ITEGYSGADIAALVREAALE 461 (494)
T ss_pred cCCcchhhhhHHHHHH--HhcCCCHHHHHHHHHHHHHH
Confidence 100 1111 112222 57799999998888776654
No 130
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.54 E-value=2.5e-13 Score=139.53 Aligned_cols=134 Identities=21% Similarity=0.227 Sum_probs=91.5
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccc----cCcceEEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEE
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQ----FNAMVLELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLII 376 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~----~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vli 376 (533)
.++|||||||||||++|+++|+.+..... ....++.+..++.. ....++..+....... ....+.|+|
T Consensus 217 ~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a--~~g~p~IIf 294 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKA--SDGRPVIVF 294 (512)
T ss_pred cceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHh--hcCCCceEE
Confidence 35999999999999999999999843310 12233444433321 1223333332222111 113578999
Q ss_pred EeCCCCCCHH------------HHHHHHHHHHhc--CCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHh
Q psy4285 377 LDEADAMTND------------AQNALRRIIEKF--TTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRL 439 (533)
Q Consensus 377 iDE~d~l~~~------------~~~~Ll~~le~~--~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l 439 (533)
|||+|.+... ..+.|+..|+.. ..++.+|++||.++.+||+++| ||+ .+.|++|+.++..+++
T Consensus 295 IDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il 374 (512)
T TIGR03689 295 FDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIF 374 (512)
T ss_pred EehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHH
Confidence 9999988431 134666777643 2568899999999999999998 995 7999999999999999
Q ss_pred hcC
Q psy4285 440 DYD 442 (533)
Q Consensus 440 ~~~ 442 (533)
...
T Consensus 375 ~~~ 377 (512)
T TIGR03689 375 SKY 377 (512)
T ss_pred HHH
Confidence 776
No 131
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.53 E-value=1.8e-12 Score=117.77 Aligned_cols=145 Identities=18% Similarity=0.133 Sum_probs=117.8
Q ss_pred hhcccccccCCCc-eeEeCCCC-CChHHHHHHHHHHHccccc---cCcceEEecCC-------CCCchhHHHHHHHHHHh
Q psy4285 296 KINRFIDENELPH-LLFYGPPG-TGKTTTILACARKLYTKAQ---FNAMVLELNAS-------DDRGIGIVRDQIFQFAS 363 (533)
Q Consensus 296 ~l~~~~~~~~~~~-~ll~GppG-tGKT~la~~la~~l~~~~~---~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 363 (533)
.+...++.++..| .||.|..+ +||..++..+++.+.|... ....+..+.+. ...+.+.+|+..+.+..
T Consensus 4 ~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~ 83 (263)
T PRK06581 4 RLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSK 83 (263)
T ss_pred HHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhh
Confidence 4555667777778 89999998 9999999999999877521 12334444432 23567889987776654
Q ss_pred cccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 364 TKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 364 ~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
.+. .++.+|++||++|.|+.+++|+|++++||||.++.||++|+.+..++|+++|||..+.|..+......+.....
T Consensus 84 ~p~--~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~~~e~~~~~ 160 (263)
T PRK06581 84 TSA--ISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHAYNELYSQF 160 (263)
T ss_pred Ccc--cCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHHHHHHHHHh
Confidence 432 46899999999999999999999999999999999999999999999999999999999999987777766665
No 132
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.1e-13 Score=147.11 Aligned_cols=98 Identities=24% Similarity=0.445 Sum_probs=89.7
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+||++++|||+|+..++|+|||+|||++++|++++.+++..||.+++.++|+.++++++..|+..++||+|+|++.|+
T Consensus 145 LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Le 224 (614)
T PRK14971 145 LEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFD 224 (614)
T ss_pred HhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhh
Q psy4285 81 SAATAHADEVNEDTIFTL 98 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~ 98 (533)
.++...+..|+.+.+.+.
T Consensus 225 kl~~y~~~~It~~~V~~~ 242 (614)
T PRK14971 225 QVVSFTGGNITYKSVIEN 242 (614)
T ss_pred HHHHhccCCccHHHHHHH
Confidence 976655545777665443
No 133
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.52 E-value=7.6e-14 Score=141.46 Aligned_cols=148 Identities=23% Similarity=0.367 Sum_probs=101.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
+++|+||||||||++|+++|+.+ ...++.+.+++.. +...++..+.... ...+.|+||||+|
T Consensus 219 gVLL~GPPGTGKT~LAraIA~el------~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~------~~~P~ILfIDEID 286 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAKAVANET------SATFLRVVGSELIQKYLGDGPKLVRELFRVAE------ENAPSIVFIDEID 286 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh------CCCEEEEecchhhhhhcchHHHHHHHHHHHHH------hCCCcEEeHHHHH
Confidence 59999999999999999999987 4556666665432 2223333332221 1356799999998
Q ss_pred CCCH-----------HHHHHHHHHH---Hh--cCCCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhhcC
Q psy4285 382 AMTN-----------DAQNALRRII---EK--FTTNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 382 ~l~~-----------~~~~~Ll~~l---e~--~~~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~~ 442 (533)
.+.. +.+..++.++ +. ...++.+|++||.++.+++++++ || ..+.|++|+.++..+++...
T Consensus 287 ~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~ 366 (438)
T PTZ00361 287 AIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIH 366 (438)
T ss_pred HHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHH
Confidence 8742 2334444444 32 24578999999999999999986 88 48999999999999988865
Q ss_pred --------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy4285 443 --------DISFFNIIIWYIKIQEIKIEKGLALTDILTEISL 476 (533)
Q Consensus 443 --------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~ 476 (533)
..++..++. .+.|+++.|+..-+..
T Consensus 367 ~~k~~l~~dvdl~~la~---------~t~g~sgAdI~~i~~e 399 (438)
T PTZ00361 367 TSKMTLAEDVDLEEFIM---------AKDELSGADIKAICTE 399 (438)
T ss_pred HhcCCCCcCcCHHHHHH---------hcCCCCHHHHHHHHHH
Confidence 112333333 6678888886654433
No 134
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=3.3e-14 Score=148.84 Aligned_cols=102 Identities=25% Similarity=0.419 Sum_probs=94.8
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++++|||+|+.+.++++||+|||+.|+|++++.+++.++|.++++++++.++++++..+++.++||+|+|+++++
T Consensus 143 LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lld 222 (527)
T PRK14969 143 LEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLD 222 (527)
T ss_pred HhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLVSR 102 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~ 102 (533)
.+.......|+.+.+.++++..
T Consensus 223 qai~~~~~~I~~~~v~~~~~~~ 244 (527)
T PRK14969 223 QAIAYGGGTVNESEVRAMLGAI 244 (527)
T ss_pred HHHHhcCCCcCHHHHHHHHCCC
Confidence 8877666679999887766543
No 135
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=6.2e-14 Score=141.15 Aligned_cols=102 Identities=24% Similarity=0.395 Sum_probs=94.1
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+||++++|||+|+.+.++.+||+|||+.++|++++.+++.++|.++++++++.+++++++.++..++||+|+|++.|+
T Consensus 143 lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~ 222 (363)
T PRK14961 143 LEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLE 222 (363)
T ss_pred HhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLVSR 102 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~ 102 (533)
.+.......|+.+.|.++++..
T Consensus 223 ~~~~~~~~~It~~~v~~~l~~~ 244 (363)
T PRK14961 223 HAINLGKGNINIKNVTDMLGLL 244 (363)
T ss_pred HHHHhcCCCCCHHHHHHHHCCC
Confidence 9877655679998887766543
No 136
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.51 E-value=1.3e-13 Score=151.78 Aligned_cols=148 Identities=21% Similarity=0.258 Sum_probs=101.0
Q ss_pred HHHHHhhhchhhhhhhcccccc------cCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCc-----
Q psy4285 282 ILRWLLNESMDLCYKINRFIDE------NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG----- 350 (533)
Q Consensus 282 ~l~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~----- 350 (533)
.+.....|++.+.+.+..++.. ...++++|+||||||||++|+++|+.+ +..++.++......
T Consensus 317 ~l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l------~~~~~~i~~~~~~~~~~i~ 390 (775)
T TIGR00763 317 ILDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL------NRKFVRFSLGGVRDEAEIR 390 (775)
T ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh------cCCeEEEeCCCcccHHHHc
Confidence 3333344556555555544321 133469999999999999999999998 44455554332111
Q ss_pred ----------hhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHH----HHHHHHHHHHhc---------------CCC
Q psy4285 351 ----------IGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND----AQNALRRIIEKF---------------TTN 401 (533)
Q Consensus 351 ----------~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~----~~~~Ll~~le~~---------------~~~ 401 (533)
.+.+.+.+. ... ....|++|||+|++... ..++|++.|+.. .++
T Consensus 391 g~~~~~~g~~~g~i~~~l~---~~~----~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 391 GHRRTYVGAMPGRIIQGLK---KAK----TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred CCCCceeCCCCchHHHHHH---HhC----cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCC
Confidence 111222211 111 23349999999999763 347899888631 146
Q ss_pred cEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 402 ~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
+.||+|||..+.+++++++||..+.|.+|+.++...++...
T Consensus 464 v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~ 504 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKY 504 (775)
T ss_pred EEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999988887654
No 137
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=1.6e-13 Score=141.18 Aligned_cols=165 Identities=15% Similarity=0.236 Sum_probs=122.0
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+|+++++||++||...++++||+|||++++|++++++++.+||.++++++|+.+++++++.++..++||+|+|++.|+
T Consensus 145 lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 145 LEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred hhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhhc--------cccc---hh----HHHHHh--------------chHHHHhh--------
Q psy4285 81 SAATAHADEVNEDTIFTLLVSRV--------EKYR---PS----TLDELV--------------SHQDIIST-------- 123 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~~--------ek~~---~~----~l~~ll--------------s~~~~l~~-------- 123 (533)
.+....+..|+.+.|.++++... +.+. .. .+.+++ .+...+..
T Consensus 225 kl~~~~~~~It~~~V~~l~~~~~~~~vf~L~~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~vk~~~~~~ 304 (451)
T PRK06305 225 YVVGLFPKSLDPDSVAKALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYNKQLS 304 (451)
T ss_pred HHHHhccCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 98764445588777654433211 0000 00 011111 11111100
Q ss_pred ---cCCChhhHHHHHhhccCccccccCCCChhhHHHHHHHHHhcc
Q psy4285 124 ---IEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 165 (533)
Q Consensus 124 ---l~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~ 165 (533)
-.+.......++..+.+.+..+..|.+..+.++.++.++...
T Consensus 305 ~~a~~~s~~~L~~ii~~l~e~d~~lk~~~~~k~~lE~lll~l~~~ 349 (451)
T PRK06305 305 SVATKYSSEQLLEIIDFLGESAKHIQLTIFEKTFLETVIIHLIRI 349 (451)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 123334445566677778888888888888888888877643
No 138
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=9.1e-14 Score=142.76 Aligned_cols=126 Identities=23% Similarity=0.329 Sum_probs=98.1
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHH------------HHHHhcccCCCCCcEE
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI------------FQFASTKTMHKSSYKL 374 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~v 374 (533)
|-++|+||||+|||++++.||+.+ +..|++++-...+....+|.-- +..... .....|
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al------~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka----~~~NPv 420 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKAL------GRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKA----GVKNPV 420 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHh------CCCEEEEecCccccHHHhccccccccccCChHHHHHHHHh----CCcCCe
Confidence 558999999999999999999999 7778887765444433333221 111111 134569
Q ss_pred EEEeCCCCCCH----HHHHHHHHHHHhc---------------CCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHH
Q psy4285 375 IILDEADAMTN----DAQNALRRIIEKF---------------TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLI 435 (533)
Q Consensus 375 liiDE~d~l~~----~~~~~Ll~~le~~---------------~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~ 435 (533)
+++||+|+|+. +-.++||..|+-. -+++.||+|+|..+.++.+|++|...+.+..|++++-
T Consensus 421 ~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EK 500 (782)
T COG0466 421 FLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEK 500 (782)
T ss_pred EEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHH
Confidence 99999999975 4568999998621 2568899999999999999999999999999999999
Q ss_pred HHHhhcC
Q psy4285 436 MSRLDYD 442 (533)
Q Consensus 436 ~~~l~~~ 442 (533)
.++..+.
T Consensus 501 l~IAk~~ 507 (782)
T COG0466 501 LEIAKRH 507 (782)
T ss_pred HHHHHHh
Confidence 9888876
No 139
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=7.3e-14 Score=147.29 Aligned_cols=103 Identities=26% Similarity=0.425 Sum_probs=95.1
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+||.+++|||+|+.+++++|||+|||+.+.|++++.+++.+||+++++++|+.++++++..++..++||+|.|++.|+
T Consensus 143 LEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ld 222 (559)
T PRK05563 143 LEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILD 222 (559)
T ss_pred hcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhhc
Q psy4285 81 SAATAHADEVNEDTIFTLLVSRV 103 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~~ 103 (533)
.+.......|+.+.|.++++...
T Consensus 223 q~~~~~~~~It~~~V~~vlg~~~ 245 (559)
T PRK05563 223 QAISFGDGKVTYEDALEVTGSVS 245 (559)
T ss_pred HHHHhccCCCCHHHHHHHhCCCC
Confidence 88765556799998887766543
No 140
>CHL00176 ftsH cell division protein; Validated
Probab=99.51 E-value=5e-13 Score=142.00 Aligned_cols=157 Identities=21% Similarity=0.230 Sum_probs=104.9
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
.++||+||||||||++|+++|.++ +.+++.+++++.. +...++..+.... ...++||||||+
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e~------~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~------~~~P~ILfIDEI 284 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGEA------EVPFFSISGSEFVEMFVGVGAARVRDLFKKAK------ENSPCIVFIDEI 284 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh------CCCeeeccHHHHHHHhhhhhHHHHHHHHHHHh------cCCCcEEEEecc
Confidence 359999999999999999999987 5667777665432 2223333333321 135689999999
Q ss_pred CCCCH-----------HHH---HHHHHHHHhc--CCCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhhc
Q psy4285 381 DAMTN-----------DAQ---NALRRIIEKF--TTNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 381 d~l~~-----------~~~---~~Ll~~le~~--~~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~ 441 (533)
|.+.. +.+ +.|+..++.. ..++.+|++||.++.+++++++ || ..+.+..|+.++..+++..
T Consensus 285 D~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~ 364 (638)
T CHL00176 285 DAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKV 364 (638)
T ss_pred hhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHH
Confidence 98842 223 3344444432 3567899999999999999997 67 5899999999999998877
Q ss_pred CHHHHHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy4285 442 DDISFFNIIIW--YIKIQEIKIEKGLALTDILTEISLLV 478 (533)
Q Consensus 442 ~~~~~~~ll~~--~~~l~~l~~~~~~~~~di~~~~~~~~ 478 (533)
.-.. ..+... ...+.. .+.|+++.|+..-+.++.
T Consensus 365 ~l~~-~~~~~d~~l~~lA~--~t~G~sgaDL~~lvneAa 400 (638)
T CHL00176 365 HARN-KKLSPDVSLELIAR--RTPGFSGADLANLLNEAA 400 (638)
T ss_pred HHhh-cccchhHHHHHHHh--cCCCCCHHHHHHHHHHHH
Confidence 6110 000000 111111 567888888877666553
No 141
>KOG0731|consensus
Probab=99.51 E-value=1.9e-13 Score=143.35 Aligned_cols=154 Identities=23% Similarity=0.237 Sum_probs=108.4
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC------CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCC
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD------RGIGIVRDQIFQFASTKTMHKSSYKLIILDEADA 382 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~ 382 (533)
+||+||||||||.+|+|+|.+. +.+|+.+++++. .+...+++++.... ...+++++|||+|.
T Consensus 347 vLL~GPPGTGKTLLAKAiAGEA------gVPF~svSGSEFvE~~~g~~asrvr~lf~~ar------~~aP~iifideida 414 (774)
T KOG0731|consen 347 VLLVGPPGTGKTLLAKAIAGEA------GVPFFSVSGSEFVEMFVGVGASRVRDLFPLAR------KNAPSIIFIDEIDA 414 (774)
T ss_pred eEEECCCCCcHHHHHHHHhccc------CCceeeechHHHHHHhcccchHHHHHHHHHhh------ccCCeEEEeccccc
Confidence 9999999999999999999988 889999999873 23455565543322 24678999999998
Q ss_pred CCHH------------HH---HHHHHHHHh--cCCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcC
Q psy4285 383 MTND------------AQ---NALRRIIEK--FTTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 383 l~~~------------~~---~~Ll~~le~--~~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~ 442 (533)
+... .. |.|+--||. ...++.++.+||+++.+|+++++ ||+ .+.+..|+.....+++.-.
T Consensus 415 ~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h 494 (774)
T KOG0731|consen 415 VGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVH 494 (774)
T ss_pred ccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHH
Confidence 7532 22 334444443 34568888899999999999999 995 7777778777777776655
Q ss_pred --HHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy4285 443 --DISF-FNIIIWYIKIQEIKIEKGLALTDILTEISLL 477 (533)
Q Consensus 443 --~~~~-~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~ 477 (533)
+-.+ .+..+ +..+.. .+.|+++.|+.+-+.++
T Consensus 495 ~~~~~~~~e~~d-l~~~a~--~t~gf~gadl~n~~nea 529 (774)
T KOG0731|consen 495 LRKKKLDDEDVD-LSKLAS--LTPGFSGADLANLCNEA 529 (774)
T ss_pred hhccCCCcchhh-HHHHHh--cCCCCcHHHHHhhhhHH
Confidence 0000 11111 111222 78899999998866654
No 142
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.50 E-value=5.2e-13 Score=140.37 Aligned_cols=155 Identities=21% Similarity=0.291 Sum_probs=106.0
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHcccc--cc--CcceEEecCCCCCc-hhHHH-HHHHH-
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKA--QF--NAMVLELNASDDRG-IGIVR-DQIFQ- 360 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~--~~--~~~~~~~~~~~~~~-~~~~~-~~~~~- 360 (533)
.|++..+..+...+......|++|+||||||||++|+++++...... .+ ...++.+++..... ...+. ..++.
T Consensus 68 iGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~ 147 (531)
T TIGR02902 68 IGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSV 147 (531)
T ss_pred eCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCc
Confidence 45566666666555555566899999999999999999987653221 11 35678887654211 00010 01000
Q ss_pred ---HHh--------------cccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-------------------------
Q psy4285 361 ---FAS--------------TKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF------------------------- 398 (533)
Q Consensus 361 ---~~~--------------~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~------------------------- 398 (533)
... ......+..++|||||++.|+...|+.|++.|++.
T Consensus 148 ~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (531)
T TIGR02902 148 HDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQ 227 (531)
T ss_pred ccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcc
Confidence 000 00001245689999999999999999999999752
Q ss_pred ---CCCcEEEEEe-CCCCCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 399 ---TTNVRFCIIC-NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 399 ---~~~~~~I~~~-n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
+.++++|++| +.+..++|+++|||..+.|.+++.+++..++.+.
T Consensus 228 ~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~ 275 (531)
T TIGR02902 228 NGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNA 275 (531)
T ss_pred cCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHH
Confidence 2235666655 6788999999999999999999999998888876
No 143
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=1.3e-13 Score=146.10 Aligned_cols=101 Identities=26% Similarity=0.422 Sum_probs=92.8
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++++|||+|+.+++|+|||+|||++++|++++.+++.++|..++.++++.++++++..++..++||+|.|+++++
T Consensus 142 LEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 142 LEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred hhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLVS 101 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~ 101 (533)
.+.......|+.+.+.++++.
T Consensus 222 kl~~y~~~~It~e~V~ellg~ 242 (725)
T PRK07133 222 QVSIFGNNKITLKNVEELFGL 242 (725)
T ss_pred HHHHhccCCCCHHHHHHHHcC
Confidence 987655556888887765543
No 144
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=1.2e-13 Score=150.26 Aligned_cols=102 Identities=21% Similarity=0.318 Sum_probs=93.7
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||||+.+++|||+|+...+|++||+|||++|+|++++.+++.+||+++++++++.++++.+..+++.++||+|.+++.||
T Consensus 144 LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLE 223 (824)
T PRK07764 144 VEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLD 223 (824)
T ss_pred HhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CCCcchhhHHhhhhhh
Q psy4285 81 SAATAH-ADEVNEDTIFTLLVSR 102 (533)
Q Consensus 81 ~~~~~~-~~~i~~~~i~~~~~~~ 102 (533)
.+.... .+.||.+.+.++++..
T Consensus 224 KLia~~~~~~IT~e~V~allg~~ 246 (824)
T PRK07764 224 QLLAGAGPEGVTYERAVALLGVT 246 (824)
T ss_pred HHHhhcCCCCCCHHHHHHHhcCC
Confidence 987643 3469998887776643
No 145
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.48 E-value=2.4e-13 Score=152.72 Aligned_cols=150 Identities=14% Similarity=0.066 Sum_probs=102.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCc-------------------------------------
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG------------------------------------- 350 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------------------------------------- 350 (533)
.+|++||||||||.+|+++|.+. +.+++.+++++...
T Consensus 1632 GILLiGPPGTGKTlLAKALA~es------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~ 1705 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATNS------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMM 1705 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHhc------CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhc
Confidence 49999999999999999999997 45555554432210
Q ss_pred ----------hh--HHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHH-----HHHHHHHHHhc-----CCCcEEEEEe
Q psy4285 351 ----------IG--IVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA-----QNALRRIIEKF-----TTNVRFCIIC 408 (533)
Q Consensus 351 ----------~~--~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~-----~~~Ll~~le~~-----~~~~~~I~~~ 408 (533)
.+ .++..+.. .. ...++||+|||+|.+.... .+.|+..|+.. ..++.||++|
T Consensus 1706 n~~~~~m~~~e~~~rIr~lFel---AR---k~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAAT 1779 (2281)
T CHL00206 1706 NALTMDMMPKIDRFYITLQFEL---AK---AMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIAST 1779 (2281)
T ss_pred chhhhhhhhhhhHHHHHHHHHH---HH---HCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeC
Confidence 00 02222211 11 1468999999999997532 45666777632 3467899999
Q ss_pred CCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhc------C-----HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy4285 409 NYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDY------D-----DISFFNIIIWYIKIQEIKIEKGLALTDILTEI 474 (533)
Q Consensus 409 n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~------~-----~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~ 474 (533)
|.++.+||||++ ||+ .+.++.|+..+..+++.. . +.++..+.. .+.|++++|+..-+
T Consensus 1780 NRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~---------~T~GfSGADLanLv 1850 (2281)
T CHL00206 1780 HIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGS---------ITMGSNARDLVALT 1850 (2281)
T ss_pred CCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHH---------hCCCCCHHHHHHHH
Confidence 999999999999 995 677777776666655431 1 122333333 78899999998877
Q ss_pred HHHH
Q psy4285 475 SLLV 478 (533)
Q Consensus 475 ~~~~ 478 (533)
.+++
T Consensus 1851 NEAa 1854 (2281)
T CHL00206 1851 NEAL 1854 (2281)
T ss_pred HHHH
Confidence 7665
No 146
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.48 E-value=2.1e-13 Score=128.72 Aligned_cols=141 Identities=13% Similarity=0.199 Sum_probs=94.4
Q ss_pred hchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCC
Q psy4285 289 ESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH 368 (533)
Q Consensus 289 ~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (533)
.+......+..+......++++|+|||||||||+++++++.+... +..+..++..... ....+..+.+
T Consensus 28 ~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~---~~~v~y~~~~~~~--~~~~~~~~~~------- 95 (235)
T PRK08084 28 DNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR---GRAVGYVPLDKRA--WFVPEVLEGM------- 95 (235)
T ss_pred ccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEEHHHHh--hhhHHHHHHh-------
Confidence 455566666666555555679999999999999999999987533 2233333332211 0111222222
Q ss_pred CCCcEEEEEeCCCCCCH--HHHHHHHHHHHhcC--CCcEEEEEeCCCC----CCChhhhccc---eeeeecCCCHHHHHH
Q psy4285 369 KSSYKLIILDEADAMTN--DAQNALRRIIEKFT--TNVRFCIICNYLS----KIPPAIQSRC---TRFRFGPLDSSLIMS 437 (533)
Q Consensus 369 ~~~~~vliiDE~d~l~~--~~~~~Ll~~le~~~--~~~~~I~~~n~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~ 437 (533)
...++|+|||++.+.. ..+..|+.+++... .+..+|+||+.+. .+.|.|+||| ..+.+.+|+.++...
T Consensus 96 -~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~ 174 (235)
T PRK08084 96 -EQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQ 174 (235)
T ss_pred -hhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHH
Confidence 1236999999999863 44566666665432 3357888887553 3689999999 799999999999998
Q ss_pred HhhcC
Q psy4285 438 RLDYD 442 (533)
Q Consensus 438 ~l~~~ 442 (533)
++.+.
T Consensus 175 ~l~~~ 179 (235)
T PRK08084 175 ALQLR 179 (235)
T ss_pred HHHHH
Confidence 88763
No 147
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.48 E-value=2.3e-13 Score=137.54 Aligned_cols=149 Identities=25% Similarity=0.334 Sum_probs=99.6
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
.+++|+||||||||++|+++++.+ +..++.+.+++.. +...++..+.... ...+.||||||+
T Consensus 157 ~gvLL~GppGtGKT~lakaia~~l------~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~------~~~p~il~iDEi 224 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSELVRKYIGEGARLVREIFELAK------EKAPSIIFIDEI 224 (364)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhC------CCCEEecchHHHHHHhhhHHHHHHHHHHHHHH------hcCCcEEEhhhh
Confidence 359999999999999999999987 4455555543211 1112222222111 134679999999
Q ss_pred CCCC-----------HHHHHHHHHHHHh---c--CCCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhhc
Q psy4285 381 DAMT-----------NDAQNALRRIIEK---F--TTNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 381 d~l~-----------~~~~~~Ll~~le~---~--~~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~ 441 (533)
|.+. ...+..+.+++.+ . ..++.+|+|||.++.+++++++ || ..+.|+.|+.++..+++..
T Consensus 225 D~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~ 304 (364)
T TIGR01242 225 DAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKI 304 (364)
T ss_pred hhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHH
Confidence 9883 2334455555532 2 3578899999999999999987 77 4788999999999988876
Q ss_pred C------H--HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy4285 442 D------D--ISFFNIIIWYIKIQEIKIEKGLALTDILTEISL 476 (533)
Q Consensus 442 ~------~--~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~ 476 (533)
. + .++..+.. .+.|+++.|+..-+..
T Consensus 305 ~~~~~~l~~~~~~~~la~---------~t~g~sg~dl~~l~~~ 338 (364)
T TIGR01242 305 HTRKMKLAEDVDLEAIAK---------MTEGASGADLKAICTE 338 (364)
T ss_pred HHhcCCCCccCCHHHHHH---------HcCCCCHHHHHHHHHH
Confidence 5 1 12222222 5678888887655443
No 148
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.6e-13 Score=141.77 Aligned_cols=104 Identities=25% Similarity=0.375 Sum_probs=94.8
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+||++++||++|+...+|.+||+|||+.|+|++++.+++.++|+++++++++.++++++..|+..++||+|.|++.|+
T Consensus 152 LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ld 231 (507)
T PRK06645 152 LEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILD 231 (507)
T ss_pred HhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCC---CCcchhhHHhhhhhhcc
Q psy4285 81 SAATAHA---DEVNEDTIFTLLVSRVE 104 (533)
Q Consensus 81 ~~~~~~~---~~i~~~~i~~~~~~~~e 104 (533)
.+..... ..||.+.|.++++...+
T Consensus 232 kai~~~~~~~~~It~~~V~~llg~~~~ 258 (507)
T PRK06645 232 QAASMSAKSDNIISPQVINQMLGLVDS 258 (507)
T ss_pred HHHHhhccCCCCcCHHHHHHHHCCCCH
Confidence 9865432 25999999887765444
No 149
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.7e-13 Score=144.59 Aligned_cols=102 Identities=23% Similarity=0.409 Sum_probs=94.4
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++++|||+|+...++++||+|||++|.|++++.+++..||.+++.++++.++++++..|++.++||+|.+++.|+
T Consensus 156 LEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ld 235 (598)
T PRK09111 156 LEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLD 235 (598)
T ss_pred HHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhCCCCcchhhHHhhhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLVSR 102 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~ 102 (533)
.+.......||.+.|.++++..
T Consensus 236 kli~~g~g~It~e~V~~llg~~ 257 (598)
T PRK09111 236 QAIAHGAGEVTAEAVRDMLGLA 257 (598)
T ss_pred HHHhhcCCCcCHHHHHHHhCCC
Confidence 8766555579999998776643
No 150
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.2e-13 Score=143.42 Aligned_cols=100 Identities=28% Similarity=0.444 Sum_probs=92.4
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+||++++|||+|+.+++++|||+|||++++|++++.+++..||.+++.++++.++++++..++..++||+|.|++.|+
T Consensus 143 LEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 143 LEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLV 100 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~ 100 (533)
.+....+..|+.+.|.++++
T Consensus 223 kL~~y~~~~It~e~V~ellg 242 (605)
T PRK05896 223 QLSTFKNSEIDIEDINKTFG 242 (605)
T ss_pred HHHhhcCCCCCHHHHHHHhc
Confidence 98776555588888776543
No 151
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.47 E-value=7.5e-13 Score=131.93 Aligned_cols=164 Identities=38% Similarity=0.671 Sum_probs=130.6
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
+|+++.+++||++||...+++++++|||.+++|++++.+++..++++++.++++.+++++++.++..++||+|+|++.|+
T Consensus 126 le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~ 205 (319)
T PRK00440 126 MEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQ 205 (319)
T ss_pred HhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhhccc--------c---ch----hHHHHHhc-----hHHHHhhc-------CCChhhHHH
Q psy4285 81 SAATAHADEVNEDTIFTLLVSRVEK--------Y---RP----STLDELVS-----HQDIISTI-------EIPESMLVD 133 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~~ek--------~---~~----~~l~~lls-----~~~~l~~l-------~~~~~~~~~ 133 (533)
.++.. +..||.+.|..++....+. . .. ..+++++. ..+++..+ +.......+
T Consensus 206 ~~~~~-~~~it~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~ 284 (319)
T PRK00440 206 AAAAT-GKEVTEEAVYKITGTARPEEIREMIELALNGDFTEAREKLRDLMIDYGLSGEDIIKQIHREVWSLDIPEELKVE 284 (319)
T ss_pred HHHHc-CCCCCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 98774 4568888876544321110 0 00 12444431 22333222 355556677
Q ss_pred HHhhccCccccccCCCChhhHHHHHHHHHhcc
Q psy4285 134 LVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 165 (533)
Q Consensus 134 ~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~ 165 (533)
++..++++++++..|.++..+++.|+.+++..
T Consensus 285 ~~~~~~~~d~~~k~g~~~~~~le~~i~~~~~~ 316 (319)
T PRK00440 285 LIDAIGEADFRITEGANERIQLEALLAKLALL 316 (319)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 88888999999999999999999999998643
No 152
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.47 E-value=3.1e-13 Score=130.36 Aligned_cols=113 Identities=23% Similarity=0.314 Sum_probs=93.1
Q ss_pred CceEEEEEc--CCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhc--CCC-----CCHHHHHHHHHhcCCCHHHHH
Q psy4285 6 TNVRFCIIC--NYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQE--KVN-----VTPDGKKAIIDLSDGDMRKVL 76 (533)
Q Consensus 6 ~~~~~il~~--~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~--~~~-----~~~~~~~~~~~~~~g~~r~a~ 76 (533)
+.+.||-+| ||+|.++|+|+|||++|.|+|++.++|.+.|.+++..+ ++. +++++++.++..++||.|+|+
T Consensus 131 G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL 210 (436)
T COG2256 131 GTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL 210 (436)
T ss_pred CeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH
Confidence 455566655 99999999999999999999999999999999966532 333 789999999999999999999
Q ss_pred HHHHHHHHhCCC--CcchhhHHhhhhhhccccch--hHHHHHhchH
Q psy4285 77 NILQSAATAHAD--EVNEDTIFTLLVSRVEKYRP--STLDELVSHQ 118 (533)
Q Consensus 77 ~~l~~~~~~~~~--~i~~~~i~~~~~~~~ek~~~--~~l~~lls~~ 118 (533)
|.||.++..... .++.+.+.++++.....|+. +.||+++|-.
T Consensus 211 N~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~ 256 (436)
T COG2256 211 NLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISAL 256 (436)
T ss_pred HHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHH
Confidence 999999886543 35578888888877766665 4799998743
No 153
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=3e-13 Score=140.41 Aligned_cols=102 Identities=25% Similarity=0.352 Sum_probs=94.3
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+|+.+++||++|+.+.++.++|+|||++|+|++++.+++.+||+++++++|+.++++++..|++.++||+|+|+|.||
T Consensus 140 LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Le 219 (504)
T PRK14963 140 LEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLE 219 (504)
T ss_pred HHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhhc
Q psy4285 81 SAATAHADEVNEDTIFTLLVSRV 103 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~~ 103 (533)
.+... +..||.+.|.++++...
T Consensus 220 kl~~~-~~~It~~~V~~~l~~~~ 241 (504)
T PRK14963 220 RLLAL-GTPVTRKQVEEALGLPP 241 (504)
T ss_pred HHHhc-CCCCCHHHHHHHHCCCc
Confidence 98764 45799999887766544
No 154
>KOG0726|consensus
Probab=99.46 E-value=5.8e-13 Score=122.35 Aligned_cols=122 Identities=23% Similarity=0.376 Sum_probs=89.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCC------CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD------DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
.+++||+||||||.+|+++|+.- ...|+++.+++ +.+...+|++++-... ..+.++||||+|
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqT------SATFlRvvGseLiQkylGdGpklvRqlF~vA~e------~apSIvFiDEId 288 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQT------SATFLRVVGSELIQKYLGDGPKLVRELFRVAEE------HAPSIVFIDEID 288 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhccc------chhhhhhhhHHHHHHHhccchHHHHHHHHHHHh------cCCceEEeehhh
Confidence 49999999999999999999875 56677777665 2355566665543322 356899999999
Q ss_pred CCCH-----------HHHHHHHHHHHh-----cCCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcC
Q psy4285 382 AMTN-----------DAQNALRRIIEK-----FTTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 382 ~l~~-----------~~~~~Ll~~le~-----~~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~ 442 (533)
.+.. +.|..++.++++ ....+.+|++||..+.+||+|.+ |.+ .+.|+.|+.. .+..+..+
T Consensus 289 AiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~-TkkkIf~I 367 (440)
T KOG0726|consen 289 AIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK-TKKKIFQI 367 (440)
T ss_pred hhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchh-hhceeEEE
Confidence 9853 446666666653 24679999999999999999998 774 6777666544 44445444
No 155
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.8e-13 Score=141.45 Aligned_cols=100 Identities=22% Similarity=0.328 Sum_probs=92.4
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+|+++++|||+||.++++++||+|||++|+|++++.+++..+|+++++++++.+++++++.|+..++||+|+|+++|+
T Consensus 143 LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLe 222 (624)
T PRK14959 143 LEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLG 222 (624)
T ss_pred hhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLV 100 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~ 100 (533)
.+.......|+.+.|.++++
T Consensus 223 qll~~g~~~It~d~V~~~lg 242 (624)
T PRK14959 223 QVLALGESRLTIDGARGVLG 242 (624)
T ss_pred HHHHhcCCCcCHHHHHHHhC
Confidence 87654555799888877654
No 156
>KOG0737|consensus
Probab=99.45 E-value=4.7e-13 Score=127.74 Aligned_cols=159 Identities=22% Similarity=0.234 Sum_probs=102.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchh--HHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIG--IVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 385 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~ 385 (533)
++|++||||||||.+|+++|++. +..++.+..+...+.. .-....+.....+. .-.+.++||||+|.+..
T Consensus 129 GiLL~GPpG~GKTmlAKA~Akea------ga~fInv~~s~lt~KWfgE~eKlv~AvFslAs--Kl~P~iIFIDEvds~L~ 200 (386)
T KOG0737|consen 129 GILLYGPPGTGKTMLAKAIAKEA------GANFINVSVSNLTSKWFGEAQKLVKAVFSLAS--KLQPSIIFIDEVDSFLG 200 (386)
T ss_pred cceecCCCCchHHHHHHHHHHHc------CCCcceeeccccchhhHHHHHHHHHHHHhhhh--hcCcceeehhhHHHHHh
Confidence 59999999999999999999998 6777777777654421 11111221111111 23578999999998864
Q ss_pred HHH---H--------HHHHHHH----hcCCCcEEEEEeCCCCCCChhhhccc-eeeeecCCCHHHHHHHhhcC--HHHHH
Q psy4285 386 DAQ---N--------ALRRIIE----KFTTNVRFCIICNYLSKIPPAIQSRC-TRFRFGPLDSSLIMSRLDYD--DISFF 447 (533)
Q Consensus 386 ~~~---~--------~Ll~~le----~~~~~~~~I~~~n~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~--~~~~~ 447 (533)
..+ + .|...=+ .....+.+..+||+|..+|+++.||+ ..+++.-|+..+..++|.-+ ++.+.
T Consensus 201 ~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e 280 (386)
T KOG0737|consen 201 QRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE 280 (386)
T ss_pred hcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC
Confidence 221 1 1111111 12334667778899999999999998 57888888888888888776 22221
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy4285 448 NIIIWYIKIQEIKIEKGLALTDILTEISLL 477 (533)
Q Consensus 448 ~ll~~~~~l~~l~~~~~~~~~di~~~~~~~ 477 (533)
.=++ +..+.. .+.|||+.|+..-+..+
T Consensus 281 ~~vD-~~~iA~--~t~GySGSDLkelC~~A 307 (386)
T KOG0737|consen 281 DDVD-LDEIAQ--MTEGYSGSDLKELCRLA 307 (386)
T ss_pred cccC-HHHHHH--hcCCCcHHHHHHHHHHH
Confidence 1111 222222 78899999987665544
No 157
>PRK06893 DNA replication initiation factor; Validated
Probab=99.45 E-value=6.5e-13 Score=125.01 Aligned_cols=124 Identities=16% Similarity=0.241 Sum_probs=82.1
Q ss_pred CCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC-
Q psy4285 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMT- 384 (533)
Q Consensus 306 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~- 384 (533)
.|.++|+|||||||||+++++++++.... ....++.++..+... .+.+..+ ...++|+|||++.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~~~~y~~~~~~~~~~----~~~~~~~--------~~~dlLilDDi~~~~~ 105 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQ-RTAIYIPLSKSQYFS----PAVLENL--------EQQDLVCLDDLQAVIG 105 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC-CCeEEeeHHHhhhhh----HHHHhhc--------ccCCEEEEeChhhhcC
Confidence 34589999999999999999999875442 122333332221111 1111111 245799999999985
Q ss_pred -HHHHHHHHHHHHhcCC-C-cEEEEEeCCC-C---CCChhhhccce---eeeecCCCHHHHHHHhhcC
Q psy4285 385 -NDAQNALRRIIEKFTT-N-VRFCIICNYL-S---KIPPAIQSRCT---RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 385 -~~~~~~Ll~~le~~~~-~-~~~I~~~n~~-~---~l~~~l~sR~~---~i~~~~~~~~~~~~~l~~~ 442 (533)
...+..|+.+++.... + ..+|+++|.. . ..++.++||+. .+.+.+|++++...++.+.
T Consensus 106 ~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~ 173 (229)
T PRK06893 106 NEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRN 173 (229)
T ss_pred ChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHH
Confidence 3345578887765432 2 3446666653 2 24589999985 8889999999999888765
No 158
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.45 E-value=2.3e-12 Score=135.78 Aligned_cols=149 Identities=20% Similarity=0.270 Sum_probs=96.7
Q ss_pred hhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccc---cc-CcceEEecCCCCCchhHH-HHH----------
Q psy4285 294 CYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKA---QF-NAMVLELNASDDRGIGIV-RDQ---------- 357 (533)
Q Consensus 294 ~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~---~~-~~~~~~~~~~~~~~~~~~-~~~---------- 357 (533)
...|..++......+ ++++|+||||||++++.+.+++.... .. ...++++++........+ ..+
T Consensus 768 asfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~ 847 (1164)
T PTZ00112 768 HGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPP 847 (1164)
T ss_pred HHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCC
Confidence 344445554444344 46999999999999999998874321 11 245677887553332211 111
Q ss_pred --------HHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCcEEEEEeCC---CCCCChhhhccce
Q psy4285 358 --------IFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEK---FTTNVRFCIICNY---LSKIPPAIQSRCT 423 (533)
Q Consensus 358 --------~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~---~~~~~~~I~~~n~---~~~l~~~l~sR~~ 423 (533)
+..+............||||||+|.+....+..|+.+++. ....+.+|+++|. +..++|.++|||.
T Consensus 848 ~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg 927 (1164)
T PTZ00112 848 NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLA 927 (1164)
T ss_pred ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccc
Confidence 1111111000012356999999999987667777777653 2345667778875 4578899999984
Q ss_pred --eeeecCCCHHHHHHHhhcC
Q psy4285 424 --RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 424 --~i~~~~~~~~~~~~~l~~~ 442 (533)
.+.|.||+.+++.++|...
T Consensus 928 ~eeIvF~PYTaEQL~dILk~R 948 (1164)
T PTZ00112 928 FGRLVFSPYKGDEIEKIIKER 948 (1164)
T ss_pred cccccCCCCCHHHHHHHHHHH
Confidence 5999999999999999876
No 159
>KOG0744|consensus
Probab=99.44 E-value=1.3e-12 Score=121.86 Aligned_cols=130 Identities=25% Similarity=0.383 Sum_probs=92.4
Q ss_pred eeEeCCCCCChHHHHHHHHHHHcccc---ccCcceEEecCCCC---------CchhHHHHHHHHHHhcccCCCCCcEEEE
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKA---QFNAMVLELNASDD---------RGIGIVRDQIFQFASTKTMHKSSYKLII 376 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~---~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~vli 376 (533)
+|++||||||||++++++|+.+.-.. .+....+++|+... +-...+.+.+...... ++..-.++
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d----~~~lVfvL 255 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVED----RGNLVFVL 255 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhC----CCcEEEEE
Confidence 89999999999999999999984321 12334677776432 1122233333333333 24556889
Q ss_pred EeCCCCCCH---------------HHHHHHHHHHHh--cCCCcEEEEEeCCCCCCChhhhccce-eeeecCCCHHHHHHH
Q psy4285 377 LDEADAMTN---------------DAQNALRRIIEK--FTTNVRFCIICNYLSKIPPAIQSRCT-RFRFGPLDSSLIMSR 438 (533)
Q Consensus 377 iDE~d~l~~---------------~~~~~Ll~~le~--~~~~~~~I~~~n~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~ 438 (533)
|||++.+.. ...|+++..|++ ..+|+.+..|+|..+.+|.++.+|.+ +..+.+|+.+.+.++
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~I 335 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEI 335 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHH
Confidence 999998853 246889999985 45778888888999999999999997 555677777777777
Q ss_pred hhcC
Q psy4285 439 LDYD 442 (533)
Q Consensus 439 l~~~ 442 (533)
++..
T Consensus 336 lksc 339 (423)
T KOG0744|consen 336 LKSC 339 (423)
T ss_pred HHHH
Confidence 7654
No 160
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=4.7e-13 Score=137.78 Aligned_cols=102 Identities=25% Similarity=0.408 Sum_probs=93.5
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+|+++++||++|+++.++.++|+|||+++.|++++.+++..+|++++..+++.++++++..|++.++||+|.|+|.|+
T Consensus 141 LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le 220 (472)
T PRK14962 141 LEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLE 220 (472)
T ss_pred HHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLVSR 102 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~ 102 (533)
.++......||.+.+.++++..
T Consensus 221 ~l~~~~~~~It~e~V~~~l~~~ 242 (472)
T PRK14962 221 QVWKFSEGKITLETVHEALGLI 242 (472)
T ss_pred HHHHhcCCCCCHHHHHHHHcCC
Confidence 9876544569999887766543
No 161
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=5.2e-13 Score=140.26 Aligned_cols=101 Identities=20% Similarity=0.300 Sum_probs=93.7
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+||.+++|||+|+.+.++++||+|||++++|++++.+++.++|++++.++++.++++++..|++.++||+|.|++.|+
T Consensus 143 LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLd 222 (563)
T PRK06647 143 IEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFD 222 (563)
T ss_pred hccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLVS 101 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~ 101 (533)
.+....+..|+.+.+.++++.
T Consensus 223 klis~~~~~It~e~V~~llg~ 243 (563)
T PRK06647 223 QVVSFSDSDITLEQIRSKMGL 243 (563)
T ss_pred HHHhhcCCCCCHHHHHHHhCC
Confidence 887655567898888776654
No 162
>KOG0742|consensus
Probab=99.43 E-value=1.5e-12 Score=124.90 Aligned_cols=160 Identities=21% Similarity=0.257 Sum_probs=105.0
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC--c---hhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR--G---IGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
.|++||||||||||..|+.+|+.. +..+-.+.+.+.. + ...+++++...... .++-+|||||+|
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~S------GlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS-----~rGLllFIDEAD 453 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHS------GLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKS-----RRGLLLFIDEAD 453 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhc------CCceehhcCCCccccchHHHHHHHHHHHHHhhc-----ccceEEEehhhH
Confidence 469999999999999999999876 4444445554432 2 23344443332222 356799999998
Q ss_pred CCC---------HHHHHHHHHHH---HhcCCCcEEEEEeCCCCCCChhhhccce-eeeecCCCHHHHHHHhhcC------
Q psy4285 382 AMT---------NDAQNALRRII---EKFTTNVRFCIICNYLSKIPPAIQSRCT-RFRFGPLDSSLIMSRLDYD------ 442 (533)
Q Consensus 382 ~l~---------~~~~~~Ll~~l---e~~~~~~~~I~~~n~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~------ 442 (533)
.+. .....+|.-+| -+.+..+.++++||++..+|.++-+|++ .+.|+-|..++...+|...
T Consensus 454 AFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~ 533 (630)
T KOG0742|consen 454 AFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYIL 533 (630)
T ss_pred HHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhc
Confidence 763 22223333332 3456778899999999999999999995 7888777777777666554
Q ss_pred -------HHHHHHHHHH------------HHHHHH-HHHhcCCCHHHHHHHHHHH
Q psy4285 443 -------DISFFNIIIW------------YIKIQE-IKIEKGLALTDILTEISLL 477 (533)
Q Consensus 443 -------~~~~~~ll~~------------~~~l~~-l~~~~~~~~~di~~~~~~~ 477 (533)
|..+..+++. -..+.+ ...+.|+|+++|..-+...
T Consensus 534 ~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~v 588 (630)
T KOG0742|consen 534 KPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASV 588 (630)
T ss_pred CcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 4445555543 112222 2266788888887666543
No 163
>KOG0743|consensus
Probab=99.43 E-value=3.9e-12 Score=124.94 Aligned_cols=149 Identities=17% Similarity=0.236 Sum_probs=105.2
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCH---
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN--- 385 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--- 385 (533)
.|||||||||||+++-|+|+.+ +..++.++-++......++.++... .+..||+|.+||.-..
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L------~ydIydLeLt~v~~n~dLr~LL~~t--------~~kSIivIEDIDcs~~l~~ 303 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYL------NYDIYDLELTEVKLDSDLRHLLLAT--------PNKSILLIEDIDCSFDLRE 303 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhc------CCceEEeeeccccCcHHHHHHHHhC--------CCCcEEEEeeccccccccc
Confidence 7999999999999999999998 7888888887766666677765432 4568999999997621
Q ss_pred ---------------HHHHHHHHHHHhcCC----CcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcC-
Q psy4285 386 ---------------DAQNALRRIIEKFTT----NVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYD- 442 (533)
Q Consensus 386 ---------------~~~~~Ll~~le~~~~----~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~- 442 (533)
-..+.||..++..-+ ...+|+|||..++|||||+| |.+ ++.+..=+.++......+.
T Consensus 304 ~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL 383 (457)
T KOG0743|consen 304 RRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYL 383 (457)
T ss_pred ccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhc
Confidence 123568888885433 34789999999999999999 664 7777777777777666665
Q ss_pred --HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 443 --DISFFNIIIWYIKIQEIKIEKGLALTDILTEIS 475 (533)
Q Consensus 443 --~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~ 475 (533)
++ --.++...+ .+......+|+|+...+.
T Consensus 384 ~~~~-~h~L~~eie---~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 384 GIEE-DHRLFDEIE---RLIEETEVTPAQVAEELM 414 (457)
T ss_pred CCCC-CcchhHHHH---HHhhcCccCHHHHHHHHh
Confidence 11 111122111 122444667777766653
No 164
>KOG1969|consensus
Probab=99.43 E-value=2.5e-12 Score=131.96 Aligned_cols=128 Identities=27% Similarity=0.373 Sum_probs=105.5
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCC--CCcEEEEEeCCCCCCHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHK--SSYKLIILDEADAMTND 386 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vliiDE~d~l~~~ 386 (533)
+||+||||.||||+|+.+|++. |+.++++|+++.+....+++.+....+...... ..+..|||||||--...
T Consensus 329 lLL~GppGlGKTTLAHViAkqa------GYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~ 402 (877)
T KOG1969|consen 329 LLLCGPPGLGKTTLAHVIAKQA------GYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRA 402 (877)
T ss_pred EEeecCCCCChhHHHHHHHHhc------CceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHH
Confidence 7999999999999999999998 999999999999999999998887766554442 57889999999999988
Q ss_pred HHHHHHHHHHh------cCC---------------CcEEEEEeCCCC-CCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 387 AQNALRRIIEK------FTT---------------NVRFCIICNYLS-KIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 387 ~~~~Ll~~le~------~~~---------------~~~~I~~~n~~~-~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
+.+.++.+++. ++. .-.||++||... .-..+|+--+..+.|.+|+...+.++|..|
T Consensus 403 ~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~I 480 (877)
T KOG1969|consen 403 AVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEI 480 (877)
T ss_pred HHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHH
Confidence 89999998862 111 134899999765 223344445689999999999999999998
No 165
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.42 E-value=2.3e-12 Score=129.51 Aligned_cols=161 Identities=29% Similarity=0.448 Sum_probs=125.9
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+++++++||++|+.+.+++++|+|||..++|.+++.+++..+|++++.++++.+++++++.++..++||+|++++.|+
T Consensus 149 le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~ 228 (337)
T PRK12402 149 MEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQ 228 (337)
T ss_pred HHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhh-hcc-cc----------ch----hHHHHHh-----chHHHHhhc------CCChhhHHH
Q psy4285 81 SAATAHADEVNEDTIFTLLVS-RVE-KY----------RP----STLDELV-----SHQDIISTI------EIPESMLVD 133 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~-~~e-k~----------~~----~~l~~ll-----s~~~~l~~l------~~~~~~~~~ 133 (533)
.++. ....||.+.+.++++. ..+ .. +. ..+++++ +...+...+ +.....+.+
T Consensus 229 ~~~~-~~~~It~~~v~~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~~~~~~~l~~ 307 (337)
T PRK12402 229 TAAL-AAGEITMEAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELLRVARSRYRGDNLAR 307 (337)
T ss_pred HHHH-cCCCCCHHHHHHHhCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCHHHHHH
Confidence 8774 3346888887665442 111 10 01 1233332 112222221 244455567
Q ss_pred HHhhccCccccccCCCChhhHHHHHHHHH
Q psy4285 134 LVLKMSDIEYRLAAGTSEKIQLSALIAAF 162 (533)
Q Consensus 134 ~~~~~~~~~~~~~~G~~~~~~l~~~~~~~ 162 (533)
.+..++++++.+..|..+.+++++|+.++
T Consensus 308 ~~~~l~~~d~~lk~g~~~~~~le~~i~~~ 336 (337)
T PRK12402 308 LHRLAADADARLTDGANDRIQLEALLAEL 336 (337)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 78888999999999999999999999875
No 166
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=9.6e-13 Score=139.01 Aligned_cols=100 Identities=25% Similarity=0.375 Sum_probs=91.4
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+||++++|||+|+..++|++||+|||++++|++++.+++..||.+++.++++.+++++++.++..++||+|.|++.|+
T Consensus 151 LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 151 LEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred HhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC-----CCCcchhhHHhhhh
Q psy4285 81 SAATAH-----ADEVNEDTIFTLLV 100 (533)
Q Consensus 81 ~~~~~~-----~~~i~~~~i~~~~~ 100 (533)
.+.... ...|+.+.|.+++.
T Consensus 231 KL~~y~~~~~~~~~It~~~V~~lv~ 255 (620)
T PRK14954 231 QVIAFSVGSEAEKVIAYQGVAELLN 255 (620)
T ss_pred HHHHhccccccCCccCHHHHHHHHc
Confidence 887654 34588877766554
No 167
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.41 E-value=6.7e-12 Score=126.67 Aligned_cols=206 Identities=14% Similarity=0.105 Sum_probs=115.3
Q ss_pred HHHHHHHhhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEe-cCCCCCchhHHHHH-
Q psy4285 280 TNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLEL-NASDDRGIGIVRDQ- 357 (533)
Q Consensus 280 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~- 357 (533)
...+.....|++++++.+...+..+. |++|+||||||||++|+++++.+.....+......+ .+++..+...+...
T Consensus 15 ~~~l~~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~ 92 (498)
T PRK13531 15 SSALEKGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALK 92 (498)
T ss_pred HHHHhhhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhh
Confidence 33344456788888887777766555 899999999999999999999864321111111111 12222221111111
Q ss_pred -HHHHHh-cccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC---------CCcEE-EEEeCCCC---CCChhhhccc
Q psy4285 358 -IFQFAS-TKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFT---------TNVRF-CIICNYLS---KIPPAIQSRC 422 (533)
Q Consensus 358 -~~~~~~-~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~---------~~~~~-I~~~n~~~---~l~~~l~sR~ 422 (533)
.+.|.. ..... ....++|+||+..+++..+++|+..|++.. -..++ +++||... ...+++..||
T Consensus 93 ~~g~f~r~~~G~L-~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRF 171 (498)
T PRK13531 93 DEGRYQRLTSGYL-PEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRM 171 (498)
T ss_pred hcCchhhhcCCcc-ccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhE
Confidence 111211 11101 134599999999999999999999997532 22344 55555332 2345999999
Q ss_pred e-eeeecCCCH-HHHHHHhhcCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy4285 423 T-RFRFGPLDS-SLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498 (533)
Q Consensus 423 ~-~i~~~~~~~-~~~~~~l~~~~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (533)
. .+.++++++ ++..++|.........-.. ....++..++ ..+.+.+....+++.+..++......+
T Consensus 172 liri~vp~l~~~~~e~~lL~~~~~~~~~~~~---------~~~vis~eel-~~lq~~v~~V~v~d~v~eyI~~L~~~l 239 (498)
T PRK13531 172 LIRLWLDKVQDKANFRSMLTSQQDENDNPVP---------ASLQITDEEY-QQWQKEIGKITLPDHVFELIFQLRQQL 239 (498)
T ss_pred EEEEECCCCCchHHHHHHHHcccccccCCCc---------ccCCCCHHHH-HHHHHHhcceeCCHHHHHHHHHHHHHH
Confidence 4 677777764 4456666542000000000 0113455554 345555666666666666655555443
No 168
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=2.3e-13 Score=120.15 Aligned_cols=83 Identities=20% Similarity=0.216 Sum_probs=76.7
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhcccee-------------EEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTR-------------FRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDL 67 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 67 (533)
+||||++++|||+|+.+++++|||+|||++ +.|++++.+++.++|++ .+++++...+++++.|+..
T Consensus 78 LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~l 156 (206)
T PRK08485 78 LEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESL 156 (206)
T ss_pred hcCCCCCeEEEEEeCChHhCchHHHhhheeccccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHH
Confidence 699999999999999999999999999997 78999999999999998 6788887788889999999
Q ss_pred cCCCHHHHHHHHHHHHH
Q psy4285 68 SDGDMRKVLNILQSAAT 84 (533)
Q Consensus 68 ~~g~~r~a~~~l~~~~~ 84 (533)
+.|++|.++.+.+....
T Consensus 157 a~~s~r~~l~l~~q~l~ 173 (206)
T PRK08485 157 LKECVKYKIPLNEEELE 173 (206)
T ss_pred HHHHHHHHcCccHHHHH
Confidence 99999999988887654
No 169
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.41 E-value=1.6e-12 Score=122.84 Aligned_cols=141 Identities=16% Similarity=0.266 Sum_probs=95.8
Q ss_pred hchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCC
Q psy4285 289 ESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH 368 (533)
Q Consensus 289 ~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (533)
++......+++++......+++|+||||||||++|+++++.+... +..++.+++.+.... ..+.+..+
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~---~~~~~~i~~~~~~~~--~~~~~~~~------- 88 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER---GKSAIYLPLAELAQA--DPEVLEGL------- 88 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCcEEEEeHHHHHHh--HHHHHhhc-------
Confidence 455666777776655555579999999999999999999987533 334555555432211 11111111
Q ss_pred CCCcEEEEEeCCCCCCHHH--HHHHHHHHHhc-CCCcEEEEEeCCCC-C--C-Chhhhccc---eeeeecCCCHHHHHHH
Q psy4285 369 KSSYKLIILDEADAMTNDA--QNALRRIIEKF-TTNVRFCIICNYLS-K--I-PPAIQSRC---TRFRFGPLDSSLIMSR 438 (533)
Q Consensus 369 ~~~~~vliiDE~d~l~~~~--~~~Ll~~le~~-~~~~~~I~~~n~~~-~--l-~~~l~sR~---~~i~~~~~~~~~~~~~ 438 (533)
...++|+|||++.+.... ++.|+.+++.. ..+..+|++++... . . .+.+.+|+ ..+.+++++.++...+
T Consensus 89 -~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~ 167 (226)
T TIGR03420 89 -EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAA 167 (226)
T ss_pred -ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHH
Confidence 234699999999998643 78888887652 23357888887543 2 2 37888887 4789999999998888
Q ss_pred hhcC
Q psy4285 439 LDYD 442 (533)
Q Consensus 439 l~~~ 442 (533)
+.+.
T Consensus 168 l~~~ 171 (226)
T TIGR03420 168 LQSR 171 (226)
T ss_pred HHHH
Confidence 8754
No 170
>PRK08727 hypothetical protein; Validated
Probab=99.40 E-value=4.7e-12 Score=119.41 Aligned_cols=122 Identities=22% Similarity=0.306 Sum_probs=86.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC--H
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMT--N 385 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~--~ 385 (533)
.++|+||+||||||++.++++++... +..+..++..+.. ..+...+..+ ...++|+|||++.+. .
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~---~~~~~y~~~~~~~--~~~~~~~~~l--------~~~dlLiIDDi~~l~~~~ 109 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQA---GRSSAYLPLQAAA--GRLRDALEAL--------EGRSLVALDGLESIAGQR 109 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEeHHHhh--hhHHHHHHHH--------hcCCEEEEeCcccccCCh
Confidence 49999999999999999999987443 3333444432211 1122222222 245699999999986 3
Q ss_pred HHHHHHHHHHHhcC-CCcEEEEEeCCCC----CCChhhhcc---ceeeeecCCCHHHHHHHhhcC
Q psy4285 386 DAQNALRRIIEKFT-TNVRFCIICNYLS----KIPPAIQSR---CTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 386 ~~~~~Ll~~le~~~-~~~~~I~~~n~~~----~l~~~l~sR---~~~i~~~~~~~~~~~~~l~~~ 442 (533)
..+..++.+++... .+..+|+|+|.+. .+++.++|| +..+.|.+|+.+++.+++.+.
T Consensus 110 ~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 110 EDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 45667888877532 3456888887543 357999999 578999999999999999974
No 171
>KOG2004|consensus
Probab=99.40 E-value=1.5e-12 Score=133.26 Aligned_cols=140 Identities=24% Similarity=0.342 Sum_probs=100.1
Q ss_pred chhhhhhhcccccccC------CCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchh-----------
Q psy4285 290 SMDLCYKINRFIDENE------LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIG----------- 352 (533)
Q Consensus 290 ~~~~~~~l~~~~~~~~------~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~----------- 352 (533)
-+++.+++.+++.-+. .+-++|+||||+|||++++.||+.+ ++.|++++-.......
T Consensus 416 m~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL------nRkFfRfSvGG~tDvAeIkGHRRTYVG 489 (906)
T KOG2004|consen 416 MEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL------NRKFFRFSVGGMTDVAEIKGHRRTYVG 489 (906)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh------CCceEEEeccccccHHhhcccceeeec
Confidence 3445555555544332 2338999999999999999999999 5566665543222211
Q ss_pred ----HHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCH----HHHHHHHHHHHhc---------------CCCcEEEEEeC
Q psy4285 353 ----IVRDQIFQFASTKTMHKSSYKLIILDEADAMTN----DAQNALRRIIEKF---------------TTNVRFCIICN 409 (533)
Q Consensus 353 ----~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~----~~~~~Ll~~le~~---------------~~~~~~I~~~n 409 (533)
.+-+.++.. .....+++|||+|++.. +-..+|+.+|+-. -+.+.||+|.|
T Consensus 490 AMPGkiIq~LK~v-------~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN 562 (906)
T KOG2004|consen 490 AMPGKIIQCLKKV-------KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTAN 562 (906)
T ss_pred cCChHHHHHHHhh-------CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEecc
Confidence 122222221 13456999999999964 4568899988621 14588999999
Q ss_pred CCCCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 410 ~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
..+.++++|++|...|.+..|..++-.++.++.
T Consensus 563 ~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~y 595 (906)
T KOG2004|consen 563 VIDTIPPPLLDRMEVIELSGYVAEEKVKIAERY 595 (906)
T ss_pred ccccCChhhhhhhheeeccCccHHHHHHHHHHh
Confidence 999999999999999999999999988887776
No 172
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.40 E-value=1.1e-12 Score=143.13 Aligned_cols=126 Identities=24% Similarity=0.343 Sum_probs=92.1
Q ss_pred CCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHH------------HHHHHhcccCCCCCcE
Q psy4285 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQ------------IFQFASTKTMHKSSYK 373 (533)
Q Consensus 306 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 373 (533)
.+.++|+||||+|||++++.+++.+ +..+..++.........+... ...+... .....
T Consensus 349 g~~i~l~GppG~GKTtl~~~ia~~l------~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~----~~~~~ 418 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLGQSIAKAT------GRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKV----GVKNP 418 (784)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhc----CCCCC
Confidence 3458999999999999999999987 455555554433222222111 1111111 12345
Q ss_pred EEEEeCCCCCCHHH----HHHHHHHHHhc---------------CCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHH
Q psy4285 374 LIILDEADAMTNDA----QNALRRIIEKF---------------TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSL 434 (533)
Q Consensus 374 vliiDE~d~l~~~~----~~~Ll~~le~~---------------~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~ 434 (533)
|++|||+|+++.+. +++|+.+++.. -+++.||+|+|.. .++++|++||..+.|.+++.++
T Consensus 419 villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~ee 497 (784)
T PRK10787 419 LFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDE 497 (784)
T ss_pred EEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHH
Confidence 99999999998764 58999999741 1678888888877 5999999999999999999999
Q ss_pred HHHHhhcC
Q psy4285 435 IMSRLDYD 442 (533)
Q Consensus 435 ~~~~l~~~ 442 (533)
..++..+.
T Consensus 498 k~~Ia~~~ 505 (784)
T PRK10787 498 KLNIAKRH 505 (784)
T ss_pred HHHHHHHh
Confidence 99888776
No 173
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=1.3e-12 Score=135.15 Aligned_cols=102 Identities=25% Similarity=0.346 Sum_probs=94.3
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+||++++|||+|+.++++.+||+|||+.++|++++.+++..||.++++++|+.++++++..++..++||+|.|++.|+
T Consensus 143 LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ld 222 (486)
T PRK14953 143 LEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLD 222 (486)
T ss_pred HhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLVSR 102 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~ 102 (533)
.+....+..||.+.|.++++..
T Consensus 223 kl~~~~~~~It~~~V~~~lg~~ 244 (486)
T PRK14953 223 QASTYGEGKVTIKVVEEFLGIV 244 (486)
T ss_pred HHHHhcCCCcCHHHHHHHhCCC
Confidence 9876666679999887766543
No 174
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.40 E-value=2.8e-12 Score=112.01 Aligned_cols=133 Identities=31% Similarity=0.335 Sum_probs=87.6
Q ss_pred hhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHH---HHHhcccCCC
Q psy4285 293 LCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF---QFASTKTMHK 369 (533)
Q Consensus 293 ~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 369 (533)
....+...+......+++++||||||||++++.+++.+... +..++.++............... ..........
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP---GAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEK 82 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC---CCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhcc
Confidence 34444444444344579999999999999999999987522 34556666554333222221111 0000001112
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhc------CCCcEEEEEeCCCC--CCChhhhccc-eeeeec
Q psy4285 370 SSYKLIILDEADAMTNDAQNALRRIIEKF------TTNVRFCIICNYLS--KIPPAIQSRC-TRFRFG 428 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~~~~~Ll~~le~~------~~~~~~I~~~n~~~--~l~~~l~sR~-~~i~~~ 428 (533)
....++++||++.+.......+++.++.. ..++.+|+++|... .+++.+.+|| ..+.++
T Consensus 83 ~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 83 AKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred CCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 45789999999999888888888888765 36788999998777 7889999999 455443
No 175
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.39 E-value=1.4e-11 Score=125.25 Aligned_cols=143 Identities=20% Similarity=0.292 Sum_probs=91.7
Q ss_pred ccccccCCCceeEeCCCCCChHHHHHHHHHHHccccc---cCcceEEecCCCCCch-hHHHHHHHHHH------------
Q psy4285 299 RFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ---FNAMVLELNASDDRGI-GIVRDQIFQFA------------ 362 (533)
Q Consensus 299 ~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~------------ 362 (533)
..+..+..++++++||||||||++++.+++.+..... ....++.+++....+. ..+......+.
T Consensus 33 ~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 112 (365)
T TIGR02928 33 PILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLS 112 (365)
T ss_pred HHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence 3333444557999999999999999999998743210 1134566676543332 22222222221
Q ss_pred ---------hcccCCCCCcEEEEEeCCCCCCHH---HHHHHHHH--HHhcC-CCcEEEEEeCCCC---CCChhhhccc--
Q psy4285 363 ---------STKTMHKSSYKLIILDEADAMTND---AQNALRRI--IEKFT-TNVRFCIICNYLS---KIPPAIQSRC-- 422 (533)
Q Consensus 363 ---------~~~~~~~~~~~vliiDE~d~l~~~---~~~~Ll~~--le~~~-~~~~~I~~~n~~~---~l~~~l~sR~-- 422 (533)
.... ....+.||+|||+|.+... ....|+++ ..+.+ .++.+|+++|.+. .+++.+.+||
T Consensus 113 ~~~~~~~l~~~l~-~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~ 191 (365)
T TIGR02928 113 TSEVFRRLYKELN-ERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCE 191 (365)
T ss_pred HHHHHHHHHHHHH-hcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCc
Confidence 0000 0134679999999999532 23344444 22222 5678899998775 5888999998
Q ss_pred eeeeecCCCHHHHHHHhhcC
Q psy4285 423 TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 423 ~~i~~~~~~~~~~~~~l~~~ 442 (533)
..+.|.|++.+++.+++...
T Consensus 192 ~~i~f~p~~~~e~~~il~~r 211 (365)
T TIGR02928 192 EEIIFPPYDAEELRDILENR 211 (365)
T ss_pred ceeeeCCCCHHHHHHHHHHH
Confidence 47999999999999999765
No 176
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.38 E-value=6.8e-12 Score=124.10 Aligned_cols=168 Identities=16% Similarity=0.152 Sum_probs=112.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHH-HH----HHhc----c-cCCCCCcEEEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI-FQ----FAST----K-TMHKSSYKLIIL 377 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~----~-~~~~~~~~vlii 377 (533)
+++|+|++||||+++|+++....... ..+++.+++..... ..+...+ +. |... . ....+..++|||
T Consensus 24 pVLI~GE~GtGK~~lAr~iH~~s~r~---~~pfv~vnc~~~~~-~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~L 99 (329)
T TIGR02974 24 PVLIIGERGTGKELIAARLHYLSKRW---QGPLVKLNCAALSE-NLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFL 99 (329)
T ss_pred CEEEECCCCChHHHHHHHHHHhcCcc---CCCeEEEeCCCCCh-HHHHHHHhccccccccCcccccCCchhhCCCCEEEe
Confidence 59999999999999999998765332 56888899876432 2222221 10 0000 0 011345789999
Q ss_pred eCCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHHHh
Q psy4285 378 DEADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 378 DE~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~~l 439 (533)
||++.|+.+.|..|++.+++. +.++++|++|+.. ..+.+.|..|+..+.+.-|+ |
T Consensus 100 dei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPp-------L 172 (329)
T TIGR02974 100 DELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPP-------L 172 (329)
T ss_pred CChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCc-------h
Confidence 999999999999999999853 2457999999753 35678888899766666666 4
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhcCCChhHH
Q psy4285 440 DYDDISFFNIIIWYIKIQEIKIEKGLAL-TDILTEISLLVHRLEIPESML 488 (533)
Q Consensus 440 ~~~~~~~~~ll~~~~~l~~l~~~~~~~~-~di~~~~~~~~~~~~~~~~~~ 488 (533)
+..++|+..+++.+-. .+....|... ..+-......+..+.||++++
T Consensus 173 ReR~eDI~~L~~~fl~--~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvr 220 (329)
T TIGR02974 173 RERQEDIMLLAEHFAI--RMARELGLPLFPGFTPQAREQLLEYHWPGNVR 220 (329)
T ss_pred hhhhhhHHHHHHHHHH--HHHHHhCCCCCCCcCHHHHHHHHhCCCCchHH
Confidence 4444455555543211 1112234443 356677888899999999987
No 177
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.9e-12 Score=137.63 Aligned_cols=100 Identities=21% Similarity=0.436 Sum_probs=91.6
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+|+.+++|||+|+.+.+++|||+|||+.++|++++.+++..+|.+++.++++.++++++..+++.++||+|+|+++|+
T Consensus 145 LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 145 LEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred HhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLVS 101 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~ 101 (533)
..+... ..|+.+.|.++++.
T Consensus 225 klsL~~-~~It~e~V~~lvg~ 244 (620)
T PRK14948 225 QLSLLP-GPITPEAVWDLLGA 244 (620)
T ss_pred HHHhcc-CCCCHHHHHHHhcC
Confidence 987643 46888887765543
No 178
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.38 E-value=3.7e-12 Score=137.06 Aligned_cols=152 Identities=25% Similarity=0.255 Sum_probs=107.1
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC------CchhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD------RGIGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
.+++|+||||||||+++++++.++ +.+++.+++++. .+...++..+.... ...++|+||||+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~------~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~------~~~P~IifIDEi 253 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEA------KVPFFTISGSDFVEMFVGVGASRVRDMFEQAK------KAAPCIIFIDEI 253 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc------CCCEEEEehHHhHHhhhcccHHHHHHHHHHHH------hcCCcEEEehhH
Confidence 359999999999999999999987 566777776542 23334444443321 135689999999
Q ss_pred CCCCHH--------------HHHHHHHHHHhc--CCCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhhc
Q psy4285 381 DAMTND--------------AQNALRRIIEKF--TTNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 381 d~l~~~--------------~~~~Ll~~le~~--~~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~ 441 (533)
|.+... ..+.|+..|+.. ...+.+|++||.++.+|+++++ || ..+.++.|+.++..+++..
T Consensus 254 D~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~ 333 (644)
T PRK10733 254 DAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKV 333 (644)
T ss_pred hhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHH
Confidence 998431 234555556643 3457888899999999999997 89 5888888998888888776
Q ss_pred C--------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy4285 442 D--------DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVH 479 (533)
Q Consensus 442 ~--------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~ 479 (533)
. ..++..+.+ .+.|+++.|+..-+.++..
T Consensus 334 ~~~~~~l~~~~d~~~la~---------~t~G~sgadl~~l~~eAa~ 370 (644)
T PRK10733 334 HMRRVPLAPDIDAAIIAR---------GTPGFSGADLANLVNEAAL 370 (644)
T ss_pred HhhcCCCCCcCCHHHHHh---------hCCCCCHHHHHHHHHHHHH
Confidence 5 111222222 6778999988777766543
No 179
>PHA02244 ATPase-like protein
Probab=99.37 E-value=1.3e-11 Score=120.30 Aligned_cols=122 Identities=24% Similarity=0.258 Sum_probs=86.2
Q ss_pred hcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC----Cc----hhHHHHHHHHHHhcccCC
Q psy4285 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD----RG----IGIVRDQIFQFASTKTMH 368 (533)
Q Consensus 297 l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~ 368 (533)
+.+++..+. +++|+||||||||++|+++|+.+ +.+++.++.... .+ ..... -..+...
T Consensus 112 i~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~l------g~pfv~In~l~d~~~L~G~i~~~g~~~--dgpLl~A---- 177 (383)
T PHA02244 112 IAKIVNANI--PVFLKGGAGSGKNHIAEQIAEAL------DLDFYFMNAIMDEFELKGFIDANGKFH--ETPFYEA---- 177 (383)
T ss_pred HHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHh------CCCEEEEecChHHHhhccccccccccc--chHHHHH----
Confidence 334555443 69999999999999999999987 555665553210 00 00000 0001100
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHh-----------cCCCcEEEEEeCCC-----------CCCChhhhccceeee
Q psy4285 369 KSSYKLIILDEADAMTNDAQNALRRIIEK-----------FTTNVRFCIICNYL-----------SKIPPAIQSRCTRFR 426 (533)
Q Consensus 369 ~~~~~vliiDE~d~l~~~~~~~Ll~~le~-----------~~~~~~~I~~~n~~-----------~~l~~~l~sR~~~i~ 426 (533)
...+.+|+|||++.+.++.+..|...++. .+++.++|+|+|.. ..+.+++++||..+.
T Consensus 178 ~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~ 257 (383)
T PHA02244 178 FKKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIE 257 (383)
T ss_pred hhcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEee
Confidence 13467999999999999999999999963 24688999999973 468999999999999
Q ss_pred ecCCCH
Q psy4285 427 FGPLDS 432 (533)
Q Consensus 427 ~~~~~~ 432 (533)
|..|++
T Consensus 258 ~dyp~~ 263 (383)
T PHA02244 258 FDYDEK 263 (383)
T ss_pred CCCCcH
Confidence 988873
No 180
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.6e-12 Score=134.12 Aligned_cols=149 Identities=24% Similarity=0.255 Sum_probs=109.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCC------CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD------DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
+++++||||||||.+|+++|.+. +.+++.+++++ +.+...+|.+..+..+. .++++||||+|
T Consensus 185 GvlLvGpPGTGKTLLAkAvAgEA------~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~------aP~IIFIDEiD 252 (596)
T COG0465 185 GVLLVGPPGTGKTLLAKAVAGEA------GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKN------APCIIFIDEID 252 (596)
T ss_pred ceeEecCCCCCcHHHHHHHhccc------CCCceeccchhhhhhhcCCCcHHHHHHHHHhhcc------CCCeEEEehhh
Confidence 49999999999999999999887 78888888876 34677888876665433 45899999999
Q ss_pred CCCHH--------------HHHHHHHHHHhcC--CCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcC
Q psy4285 382 AMTND--------------AQNALRRIIEKFT--TNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 382 ~l~~~--------------~~~~Ll~~le~~~--~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~ 442 (533)
.+... ..|.|+--||.+. ..+.++.+||+++-+||+|++ ||+ .+.+..|+-....+++.-.
T Consensus 253 AvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH 332 (596)
T COG0465 253 AVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVH 332 (596)
T ss_pred hcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHH
Confidence 98542 2355555566554 457788889999999999998 885 6677777767777777732
Q ss_pred ------H--HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy4285 443 ------D--ISFFNIIIWYIKIQEIKIEKGLALTDILTEISLL 477 (533)
Q Consensus 443 ------~--~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~ 477 (533)
. -++..+.. .+.|++..|+.+.+.+.
T Consensus 333 ~~~~~l~~~Vdl~~iAr---------~tpGfsGAdL~nl~NEA 366 (596)
T COG0465 333 AKNKPLAEDVDLKKIAR---------GTPGFSGADLANLLNEA 366 (596)
T ss_pred hhcCCCCCcCCHHHHhh---------hCCCcccchHhhhHHHH
Confidence 1 12222222 67788888887777544
No 181
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=9e-13 Score=130.08 Aligned_cols=76 Identities=24% Similarity=0.409 Sum_probs=68.5
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++|+|||+|+.+++++|||+||||.++|++++.+++.+||.+ ...++++....+++.++|++.+|+.+++
T Consensus 132 LEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~-----~~~~~~~~a~~~~~la~G~~~~Al~l~~ 206 (334)
T PRK07993 132 LEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSR-----EVTMSQDALLAALRLSAGAPGAALALLQ 206 (334)
T ss_pred hcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHH-----ccCCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 79999999999999999999999999999999999999999999962 2346677778899999999999998875
Q ss_pred H
Q psy4285 81 S 81 (533)
Q Consensus 81 ~ 81 (533)
.
T Consensus 207 ~ 207 (334)
T PRK07993 207 P 207 (334)
T ss_pred C
Confidence 3
No 182
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.37 E-value=6.6e-12 Score=118.50 Aligned_cols=136 Identities=13% Similarity=0.223 Sum_probs=91.1
Q ss_pred hchhhhhhhccccccc-CCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccC
Q psy4285 289 ESMDLCYKINRFIDEN-ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTM 367 (533)
Q Consensus 289 ~~~~~~~~l~~~~~~~-~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (533)
++......+..+.... ...+++|+||||||||++|+++++.+... +..+..+++..... .. .+
T Consensus 24 ~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~---~~~~~~i~~~~~~~------~~-~~------ 87 (227)
T PRK08903 24 ENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG---GRNARYLDAASPLL------AF-DF------ 87 (227)
T ss_pred CcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEehHHhHH------HH-hh------
Confidence 3444555555554422 22359999999999999999999987443 34555555543211 11 01
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCC--cEEEEEeCCCC---CCChhhhccc---eeeeecCCCHHHHHHHh
Q psy4285 368 HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTN--VRFCIICNYLS---KIPPAIQSRC---TRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 368 ~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~--~~~I~~~n~~~---~l~~~l~sR~---~~i~~~~~~~~~~~~~l 439 (533)
....++|+|||+|.++.+.+..|+.+++....+ ..++++++... .+.+.+.||+ ..+.++|+++++...++
T Consensus 88 -~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l 166 (227)
T PRK08903 88 -DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAAL 166 (227)
T ss_pred -cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHH
Confidence 134679999999999998899999998753322 34566665432 4668888887 68999999988766555
Q ss_pred hc
Q psy4285 440 DY 441 (533)
Q Consensus 440 ~~ 441 (533)
.+
T Consensus 167 ~~ 168 (227)
T PRK08903 167 KA 168 (227)
T ss_pred HH
Confidence 43
No 183
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.36 E-value=1.2e-11 Score=124.60 Aligned_cols=182 Identities=15% Similarity=0.151 Sum_probs=128.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHH-HHHH----HHhc----c-cCCCCCcEEEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD-QIFQ----FAST----K-TMHKSSYKLIIL 377 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~----~-~~~~~~~~vlii 377 (533)
+++++|++||||..+|++|.+..-.. +.+|+.+|+.... ...+.. +++. |... . .+..+..+.||+
T Consensus 166 ~VLI~GESGtGKElvAr~IH~~S~R~---~~PFVavNcaAip-~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfL 241 (464)
T COG2204 166 SVLITGESGTGKELVARAIHQASPRA---KGPFIAVNCAAIP-ENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFL 241 (464)
T ss_pred CEEEECCCCCcHHHHHHHHHhhCccc---CCCceeeecccCC-HHHHHHHhhcccccCcCCcccccCcceeEcCCceEEe
Confidence 59999999999999999999875333 5689999987643 222222 2211 1000 0 111356889999
Q ss_pred eCCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHHHh
Q psy4285 378 DEADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 378 DE~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~~l 439 (533)
|||..|+.+.|..|++.|++. +-+++||.+||.. ..+-+.|..|+.++.+.-|+ |
T Consensus 242 DEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPp-------L 314 (464)
T COG2204 242 DEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPP-------L 314 (464)
T ss_pred eccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCc-------c
Confidence 999999999999999999863 3568899999864 35788899999998888888 4
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhCCCC
Q psy4285 440 DYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTS 507 (533)
Q Consensus 440 ~~~~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 507 (533)
+..++|+--+++.+-. ++....|..+..+.......+..++||++++ .+..+..|...+..
T Consensus 315 RER~EDIp~L~~hfl~--~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVR-----EL~N~ver~~il~~ 375 (464)
T COG2204 315 RERKEDIPLLAEHFLK--RFAAELGRPPKGFSPEALAALLAYDWPGNVR-----ELENVVERAVILSE 375 (464)
T ss_pred cccchhHHHHHHHHHH--HHHHHcCCCCCCCCHHHHHHHHhCCCChHHH-----HHHHHHHHHHhcCC
Confidence 4555555555553222 3335567777888888999999999999998 44444444444443
No 184
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.36 E-value=6e-11 Score=121.83 Aligned_cols=144 Identities=24% Similarity=0.318 Sum_probs=93.8
Q ss_pred hcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchh-HHHHHHHHHH-------------
Q psy4285 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIG-IVRDQIFQFA------------- 362 (533)
Q Consensus 297 l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------- 362 (533)
+...+.....++++++||||||||++++.+++.+.... ....++.+++....+.. .+......+.
T Consensus 46 l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 124 (394)
T PRK00411 46 LRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDE 124 (394)
T ss_pred HHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHH
Confidence 33444444556799999999999999999999874332 13455666664432211 1111111111
Q ss_pred ------hcccCCCCCcEEEEEeCCCCCC----HHHHHHHHHHHHhcCC-CcEEEEEeCCCC---CCChhhhccc--eeee
Q psy4285 363 ------STKTMHKSSYKLIILDEADAMT----NDAQNALRRIIEKFTT-NVRFCIICNYLS---KIPPAIQSRC--TRFR 426 (533)
Q Consensus 363 ------~~~~~~~~~~~vliiDE~d~l~----~~~~~~Ll~~le~~~~-~~~~I~~~n~~~---~l~~~l~sR~--~~i~ 426 (533)
.... ....+.||+|||+|.+. .+....|+++++..+. ++.+|+++|... .+++.+.+|+ ..+.
T Consensus 125 ~~~~~~~~l~-~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~ 203 (394)
T PRK00411 125 LFDKIAEYLD-ERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIY 203 (394)
T ss_pred HHHHHHHHHH-hcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceee
Confidence 0000 01345799999999986 3455666666655433 577899988664 5788888887 5789
Q ss_pred ecCCCHHHHHHHhhcC
Q psy4285 427 FGPLDSSLIMSRLDYD 442 (533)
Q Consensus 427 ~~~~~~~~~~~~l~~~ 442 (533)
|.|++.+++.+++...
T Consensus 204 f~py~~~e~~~il~~r 219 (394)
T PRK00411 204 FPPYTADEIFDILKDR 219 (394)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 9999999999998865
No 185
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.35 E-value=6.3e-12 Score=127.08 Aligned_cols=119 Identities=23% Similarity=0.305 Sum_probs=79.9
Q ss_pred CCCHHHHHHHHHHHhhhchhhhhhhcccccc-------c---------CCCceeEeCCCCCChHHHHHHHHHHHcccccc
Q psy4285 273 YPTKTEITNILRWLLNESMDLCYKINRFIDE-------N---------ELPHLLFYGPPGTGKTTTILACARKLYTKAQF 336 (533)
Q Consensus 273 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~-------~---------~~~~~ll~GppGtGKT~la~~la~~l~~~~~~ 336 (533)
.+.+..+...+.....||+.+.+.+...+.. . ...++||+||||||||++|+++|+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l------ 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL------ 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh------
Confidence 6788999999888888998887766443311 0 12469999999999999999999987
Q ss_pred CcceEEecCCCCCchh----HHHHHHHHHHhcc--cCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHH
Q psy4285 337 NAMVLELNASDDRGIG----IVRDQIFQFASTK--TMHKSSYKLIILDEADAMTN--------------DAQNALRRIIE 396 (533)
Q Consensus 337 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~vliiDE~d~l~~--------------~~~~~Ll~~le 396 (533)
+.+++.++++...... .....+....... ......++||||||+|+++. ..|++|+++||
T Consensus 133 ~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Le 212 (412)
T PRK05342 133 DVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILE 212 (412)
T ss_pred CCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHh
Confidence 5566666655432111 1122222111110 00124568999999999975 37899999998
Q ss_pred h
Q psy4285 397 K 397 (533)
Q Consensus 397 ~ 397 (533)
.
T Consensus 213 g 213 (412)
T PRK05342 213 G 213 (412)
T ss_pred c
Confidence 4
No 186
>KOG1969|consensus
Probab=99.35 E-value=5.9e-12 Score=129.25 Aligned_cols=154 Identities=19% Similarity=0.253 Sum_probs=114.7
Q ss_pred hhccccchhHHHHHhchHHHH-hhcCCChhhHHHHHh-------------------hc---------cCccccccCCCCh
Q psy4285 101 SRVEKYRPSTLDELVSHQDII-STIEIPESMLVDLVL-------------------KM---------SDIEYRLAAGTSE 151 (533)
Q Consensus 101 ~~~ek~~~~~l~~lls~~~~l-~~l~~~~~~~~~~~~-------------------~~---------~~~~~~~~~G~~~ 151 (533)
.|+++|+|+.+-+|+|...+- .-+.|...|-+..+. .. .....+|+||.||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 699999999999999977552 222222222221111 00 1234788999998
Q ss_pred hhHHHHHHHHHhcccccceeeeecCCcccchhhhHHHHhhhhhcccccC--CCceEEEEcCccccCHHHHHHHH------
Q psy4285 152 KIQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHK--SSYKLIILDEADAMTNDAQNALR------ 223 (533)
Q Consensus 152 ~~~l~~~~~~~~~~~~~~~~~e~nasd~~g~~~~~d~i~~~a~~~~l~~--~~~~~iilDE~d~l~~~a~~~LR------ 223 (533)
|+.+.-.+.+.+ |.|+|+||||+|....++.+|.+..++.+..+ .+|.++|+||+|+-...+..+++
T Consensus 340 TTLAHViAkqaG-----YsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~ 414 (877)
T KOG1969|consen 340 TTLAHVIAKQAG-----YSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVKAT 414 (877)
T ss_pred hHHHHHHHHhcC-----ceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHHHHHHHHHHhh
Confidence 776544444444 99999999999999999999988888888875 67779999999887644444221
Q ss_pred ---------------------------------------------------------------------ccCCCChhHHH
Q psy4285 224 ---------------------------------------------------------------------RKLPVTPDGKK 234 (533)
Q Consensus 224 ---------------------------------------------------------------------r~~~~~~~~l~ 234 (533)
+.|.++..+|.
T Consensus 415 ~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~ 494 (877)
T KOG1969|consen 415 NKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALN 494 (877)
T ss_pred cchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHH
Confidence 14789999999
Q ss_pred HHHHhccCchHHhhcHHHHHHhhcC
Q psy4285 235 AIIDLSDGDMRKVLNILQSAATAHA 259 (533)
Q Consensus 235 ~l~~~s~~di~~~L~~L~~~~~~~~ 259 (533)
+|++++.+|+|.+||.||.......
T Consensus 495 ~L~el~~~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 495 ALCELTQNDIRSCINTLQFLASNVD 519 (877)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhcc
Confidence 9999999999999999999887643
No 187
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=6.3e-12 Score=125.27 Aligned_cols=150 Identities=21% Similarity=0.283 Sum_probs=102.9
Q ss_pred hhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHH-HHHHHHHhcccC---
Q psy4285 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR-DQIFQFASTKTM--- 367 (533)
Q Consensus 292 ~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--- 367 (533)
.+...+..++..+.+.|+++|||||||||++++.+++++..... ...+.++|+....+...+- .....+...+..
T Consensus 28 ~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~-~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~ 106 (366)
T COG1474 28 QLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA-NVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDS 106 (366)
T ss_pred HHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc-cCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCc
Confidence 33445667777777778999999999999999999999865531 2226777776554433222 222211110000
Q ss_pred -------------CCCCcEEEEEeCCCCCCHHHHHHH---HHHHHhcCCCcEEEEEeCCC---CCCChhhhccc--eeee
Q psy4285 368 -------------HKSSYKLIILDEADAMTNDAQNAL---RRIIEKFTTNVRFCIICNYL---SKIPPAIQSRC--TRFR 426 (533)
Q Consensus 368 -------------~~~~~~vliiDE~d~l~~~~~~~L---l~~le~~~~~~~~I~~~n~~---~~l~~~l~sR~--~~i~ 426 (533)
.....-|+++||+|.|....+..| +++-+....++.+|+++|.. ..++|.+.|++ ..+.
T Consensus 107 ~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~ 186 (366)
T COG1474 107 SLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIV 186 (366)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcceee
Confidence 024567999999999976644444 44444444446677777765 37899999988 4788
Q ss_pred ecCCCHHHHHHHhhcC
Q psy4285 427 FGPLDSSLIMSRLDYD 442 (533)
Q Consensus 427 ~~~~~~~~~~~~l~~~ 442 (533)
|+|++.+|+.++|...
T Consensus 187 F~pY~a~el~~Il~~R 202 (366)
T COG1474 187 FPPYTAEELYDILRER 202 (366)
T ss_pred eCCCCHHHHHHHHHHH
Confidence 9999999999999988
No 188
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.33 E-value=4.8e-12 Score=138.75 Aligned_cols=151 Identities=18% Similarity=0.162 Sum_probs=104.1
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccc----cCcceEEecCCCCC----chhHHHHHHH
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ----FNAMVLELNASDDR----GIGIVRDQIF 359 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~ 359 (533)
.|+++.+..+...+.....+|++|+||||||||++++++|+.+..... .+..++.++.+... ..+...+.++
T Consensus 185 igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~ 264 (731)
T TIGR02639 185 IGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLK 264 (731)
T ss_pred cCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHH
Confidence 455555555666666667778999999999999999999998744321 13455666543221 1112222333
Q ss_pred HHHhcccCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHHHhcCCCcEEEEEeCCC-----CCCChhhhccceee
Q psy4285 360 QFASTKTMHKSSYKLIILDEADAMT---------NDAQNALRRIIEKFTTNVRFCIICNYL-----SKIPPAIQSRCTRF 425 (533)
Q Consensus 360 ~~~~~~~~~~~~~~vliiDE~d~l~---------~~~~~~Ll~~le~~~~~~~~I~~~n~~-----~~l~~~l~sR~~~i 425 (533)
....... ...+.||||||+|.+. .+.++.|...++. ..+.+|.+||.. ...++++.|||..+
T Consensus 265 ~i~~~~~--~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i 340 (731)
T TIGR02639 265 AVVSEIE--KEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTYEEYKNHFEKDRALSRRFQKI 340 (731)
T ss_pred HHHHHHh--ccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCHHHHHHHhhhhHHHHHhCceE
Confidence 3222111 1245799999999885 2456777777764 458889998853 35799999999999
Q ss_pred eecCCCHHHHHHHhhcC
Q psy4285 426 RFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 426 ~~~~~~~~~~~~~l~~~ 442 (533)
.+.+|+.++...+|...
T Consensus 341 ~v~~p~~~~~~~il~~~ 357 (731)
T TIGR02639 341 DVGEPSIEETVKILKGL 357 (731)
T ss_pred EeCCCCHHHHHHHHHHH
Confidence 99999999999999965
No 189
>PRK06526 transposase; Provisional
Probab=99.33 E-value=7.8e-13 Score=125.46 Aligned_cols=160 Identities=16% Similarity=0.241 Sum_probs=101.4
Q ss_pred ccCchHHhhcHHHHHHhhcCCCCCccccccccCCCCHHHHHHHHHHHhhh-chhhhhhh--cccccccCCCceeEeCCCC
Q psy4285 240 SDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNE-SMDLCYKI--NRFIDENELPHLLFYGPPG 316 (533)
Q Consensus 240 s~~di~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~l--~~~~~~~~~~~~ll~GppG 316 (533)
......+.+..|...+...++....+...+..++|....+.++-.....+ .......+ ..|+..+ .+++|+||||
T Consensus 31 ~~~~~~e~l~~ll~~E~~~R~~~~~~~~lk~a~~p~~~~le~fd~~~~~~~~~~~~~~l~~~~fi~~~--~nlll~Gp~G 108 (254)
T PRK06526 31 ESWSHEEFLAACLQREVAARESHGGEGRIRAARFPARKSLEEFDFDHQRSLKRDTIAHLGTLDFVTGK--ENVVFLGPPG 108 (254)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccCccCCCcchHHHHHHhcCchhhcC--ceEEEEeCCC
Confidence 44567788888888888777666667788888898877777653221111 12222222 2455433 4799999999
Q ss_pred CChHHHHHHHHHHHccccccCcceEEecCCCCCc-------hhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC--HHH
Q psy4285 317 TGKTTTILACARKLYTKAQFNAMVLELNASDDRG-------IGIVRDQIFQFASTKTMHKSSYKLIILDEADAMT--NDA 387 (533)
Q Consensus 317 tGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~--~~~ 387 (533)
||||++|.+++.++... +..+...+..+... .+.....+..+ .++++|||||++... .+.
T Consensus 109 tGKThLa~al~~~a~~~---g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--------~~~dlLIIDD~g~~~~~~~~ 177 (254)
T PRK06526 109 TGKTHLAIGLGIRACQA---GHRVLFATAAQWVARLAAAHHAGRLQAELVKL--------GRYPLLIVDEVGYIPFEPEA 177 (254)
T ss_pred CchHHHHHHHHHHHHHC---CCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--------ccCCEEEEcccccCCCCHHH
Confidence 99999999999987443 22222222211100 00111111111 346899999999874 667
Q ss_pred HHHHHHHHHhcCCCcEEEEEeCCCC
Q psy4285 388 QNALRRIIEKFTTNVRFCIICNYLS 412 (533)
Q Consensus 388 ~~~Ll~~le~~~~~~~~I~~~n~~~ 412 (533)
++.|+++++....+..+|+|||.+.
T Consensus 178 ~~~L~~li~~r~~~~s~IitSn~~~ 202 (254)
T PRK06526 178 ANLFFQLVSSRYERASLIVTSNKPF 202 (254)
T ss_pred HHHHHHHHHHHHhcCCEEEEcCCCH
Confidence 7889999987555567999999764
No 190
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.33 E-value=1.6e-11 Score=135.12 Aligned_cols=147 Identities=21% Similarity=0.296 Sum_probs=102.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
+++|+||||||||++++++|+++ +..++.+++++.. ....++..+.... ...+.+|+|||+|
T Consensus 214 giLL~GppGtGKT~laraia~~~------~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~------~~~p~il~iDEid 281 (733)
T TIGR01243 214 GVLLYGPPGTGKTLLAKAVANEA------GAYFISINGPEIMSKYYGESEERLREIFKEAE------ENAPSIIFIDEID 281 (733)
T ss_pred eEEEECCCCCChHHHHHHHHHHh------CCeEEEEecHHHhcccccHHHHHHHHHHHHHH------hcCCcEEEeehhh
Confidence 59999999999999999999987 5566777664321 1223333333221 1346799999999
Q ss_pred CCCH-----------HHHHHHHHHHHhcC--CCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhhcC---
Q psy4285 382 AMTN-----------DAQNALRRIIEKFT--TNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLDYD--- 442 (533)
Q Consensus 382 ~l~~-----------~~~~~Ll~~le~~~--~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~~--- 442 (533)
.+.. ..++.|++.|+... ..+.+|.+||.++.+++++++ || ..+.+..|+.++..+++...
T Consensus 282 ~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~ 361 (733)
T TIGR01243 282 AIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN 361 (733)
T ss_pred hhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC
Confidence 8743 34667888887543 346677789999999999987 78 47888889988888888744
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 443 -----DISFFNIIIWYIKIQEIKIEKGLALTDILTEIS 475 (533)
Q Consensus 443 -----~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~ 475 (533)
..++..+.+ .+.|++..|+..-..
T Consensus 362 ~~l~~d~~l~~la~---------~t~G~~gadl~~l~~ 390 (733)
T TIGR01243 362 MPLAEDVDLDKLAE---------VTHGFVGADLAALAK 390 (733)
T ss_pred CCCccccCHHHHHH---------hCCCCCHHHHHHHHH
Confidence 112233333 567888887755433
No 191
>KOG0651|consensus
Probab=99.32 E-value=1.4e-11 Score=114.60 Aligned_cols=123 Identities=26% Similarity=0.303 Sum_probs=85.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC------CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD------RGIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
.+++|||||||||.+|++++..+ +..++.+.++.. .+...+|+........ .++++|+||+|
T Consensus 168 g~ll~GppGtGKTlla~~Vaa~m------g~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~------~pciifmdeiD 235 (388)
T KOG0651|consen 168 GLLLYGPPGTGKTLLARAVAATM------GVNFLKVVSSALVDKYIGESARLIRDMFRYAREV------IPCIIFMDEID 235 (388)
T ss_pred eeEEeCCCCCchhHHHHHHHHhc------CCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhh------CceEEeehhhh
Confidence 38999999999999999999988 666666665542 2344555554433322 35899999999
Q ss_pred CCCH-----------HHHHHHHHHHHh-----cCCCcEEEEEeCCCCCCChhhhc--cceeeeecCCCHHHHHHHhhcC
Q psy4285 382 AMTN-----------DAQNALRRIIEK-----FTTNVRFCIICNYLSKIPPAIQS--RCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 382 ~l~~-----------~~~~~Ll~~le~-----~~~~~~~I~~~n~~~~l~~~l~s--R~~~i~~~~~~~~~~~~~l~~~ 442 (533)
.... ..+..|.+++++ .-..+.+|++||+++.|+|+|++ |++...-.|++.++-+-.+.++
T Consensus 236 AigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Ki 314 (388)
T KOG0651|consen 236 AIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKI 314 (388)
T ss_pred hhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEee
Confidence 8743 345555555543 13568899999999999999998 8865544555555555445454
No 192
>PRK08181 transposase; Validated
Probab=99.32 E-value=1.6e-12 Score=123.87 Aligned_cols=160 Identities=16% Similarity=0.167 Sum_probs=101.4
Q ss_pred ccCchHHhhcHHHHHHhhcCCCCCccccccccCCCCHHHHHHHHHHHhh----hchhhhhhhcccccccCCCceeEeCCC
Q psy4285 240 SDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLN----ESMDLCYKINRFIDENELPHLLFYGPP 315 (533)
Q Consensus 240 s~~di~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~l~~~~~~~~~~~~ll~Gpp 315 (533)
....+.+.+..|...+...++....+...+..++|....+.++...... .+......+..|+..+ .+++|+|||
T Consensus 38 ~~~~~~e~L~~ll~~E~~~R~~~~~~r~lk~A~~p~~~tle~fd~~~~~~~~~~~~~~L~~~~~~~~~~--~nlll~Gp~ 115 (269)
T PRK08181 38 EGWPAARFLAAIAEHELAERARRRIERHLAEAHLPPGKTLDSFDFEAVPMVSKAQVMAIAAGDSWLAKG--ANLLLFGPP 115 (269)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHhhCCccCCCCCCHHHHHHHHHHHHHHhcC--ceEEEEecC
Confidence 3456778888888877776665555667788888876666665322111 1111222333566544 379999999
Q ss_pred CCChHHHHHHHHHHHccccccCcceEEecCCCCCch-------hHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC--HH
Q psy4285 316 GTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI-------GIVRDQIFQFASTKTMHKSSYKLIILDEADAMT--ND 386 (533)
Q Consensus 316 GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~--~~ 386 (533)
|||||+++.++++++... +..++.++..+.... ....+.++.+ ...++|||||++... ..
T Consensus 116 GtGKTHLa~Aia~~a~~~---g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--------~~~dLLIIDDlg~~~~~~~ 184 (269)
T PRK08181 116 GGGKSHLAAAIGLALIEN---GWRVLFTRTTDLVQKLQVARRELQLESAIAKL--------DKFDLLILDDLAYVTKDQA 184 (269)
T ss_pred CCcHHHHHHHHHHHHHHc---CCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--------hcCCEEEEeccccccCCHH
Confidence 999999999999987543 334444443221100 0111111111 356799999999874 45
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCC
Q psy4285 387 AQNALRRIIEKFTTNVRFCIICNYLS 412 (533)
Q Consensus 387 ~~~~Ll~~le~~~~~~~~I~~~n~~~ 412 (533)
.+..|+++++....+..+|+|||.+.
T Consensus 185 ~~~~Lf~lin~R~~~~s~IiTSN~~~ 210 (269)
T PRK08181 185 ETSVLFELISARYERRSILITANQPF 210 (269)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCH
Confidence 56789999987666678999998764
No 193
>KOG0740|consensus
Probab=99.32 E-value=7.7e-12 Score=123.93 Aligned_cols=152 Identities=21% Similarity=0.166 Sum_probs=103.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
.+|+.||||+|||.+++++|.+. +..+..++++... +...++.+++- ++. ..+.|+||||+|
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE~------~atff~iSassLtsK~~Ge~eK~vralf~v-Ar~-----~qPsvifidEid 255 (428)
T KOG0740|consen 188 GLLLFGPPGTGKTMLAKAIATES------GATFFNISASSLTSKYVGESEKLVRALFKV-ARS-----LQPSVIFIDEID 255 (428)
T ss_pred hhheecCCCCchHHHHHHHHhhh------cceEeeccHHHhhhhccChHHHHHHHHHHH-HHh-----cCCeEEEechhH
Confidence 48999999999999999999998 7778888876532 23344443332 222 356899999999
Q ss_pred CCCHHH------------HHHHHHHHH---hcCCCcEEEEEeCCCCCCChhhhccceeee-ecCCCHHHHHHHhhcC---
Q psy4285 382 AMTNDA------------QNALRRIIE---KFTTNVRFCIICNYLSKIPPAIQSRCTRFR-FGPLDSSLIMSRLDYD--- 442 (533)
Q Consensus 382 ~l~~~~------------~~~Ll~~le---~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~-~~~~~~~~~~~~l~~~--- 442 (533)
++.... ...|++..- .+.+++.+|.+||.+..+|+++++||.... ++.|+.+....++.+.
T Consensus 256 slls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~ 335 (428)
T KOG0740|consen 256 SLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKE 335 (428)
T ss_pred HHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHh
Confidence 985321 122333321 234678899999999999999999996544 4555555555555554
Q ss_pred ------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy4285 443 ------DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHR 480 (533)
Q Consensus 443 ------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~ 480 (533)
..++..+++ .++||+..|+..-+-++...
T Consensus 336 ~~~~l~~~d~~~l~~---------~Tegysgsdi~~l~kea~~~ 370 (428)
T KOG0740|consen 336 QPNGLSDLDISLLAK---------VTEGYSGSDITALCKEAAMG 370 (428)
T ss_pred CCCCccHHHHHHHHH---------HhcCcccccHHHHHHHhhcC
Confidence 233444433 78899999988877666543
No 194
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.31 E-value=4.3e-12 Score=124.31 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=68.2
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||||| +++|||+|+.+++++|||+|||++++|++++++++.++|.+.+..++.+ .....++..++||+++|++.++
T Consensus 148 LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~al~~l~ 223 (314)
T PRK07399 148 LEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAAIANIE 223 (314)
T ss_pred HhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHHHHHHH
Confidence 69999 8999999999999999999999999999999999999999876444332 2256889999999999999987
Q ss_pred HH
Q psy4285 81 SA 82 (533)
Q Consensus 81 ~~ 82 (533)
..
T Consensus 224 ~~ 225 (314)
T PRK07399 224 QL 225 (314)
T ss_pred HH
Confidence 64
No 195
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.31 E-value=3e-11 Score=116.72 Aligned_cols=128 Identities=21% Similarity=0.238 Sum_probs=90.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC------CchhHH--HHHH--HHHHhcccC--CCCCcEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD------RGIGIV--RDQI--FQFASTKTM--HKSSYKLI 375 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~--~~~~~~~~~--~~~~~~vl 375 (533)
+++|.||||||||++++.+|+.+ +.+++.++.... .+...+ ++.. ..|.. .+. ....+.++
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l------~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~-GpL~~A~~~g~il 138 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARL------NWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRD-GILPWALQHNVAL 138 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHH------CCCeEEEEecCCCChhhcCCCceeeccCCcceeEEec-CcchhHHhCCeEE
Confidence 69999999999999999999998 555555554332 221111 0000 00000 000 01245689
Q ss_pred EEeCCCCCCHHHHHHHHHHHHh--------------cCCCcEEEEEeCCCC------------CCChhhhccce-eeeec
Q psy4285 376 ILDEADAMTNDAQNALRRIIEK--------------FTTNVRFCIICNYLS------------KIPPAIQSRCT-RFRFG 428 (533)
Q Consensus 376 iiDE~d~l~~~~~~~Ll~~le~--------------~~~~~~~I~~~n~~~------------~l~~~l~sR~~-~i~~~ 428 (533)
++||+|...++.++.|..+||. +.+..++|+|+|... .++++.++||. .+.+.
T Consensus 139 llDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~ 218 (327)
T TIGR01650 139 CFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLN 218 (327)
T ss_pred EechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCC
Confidence 9999999999999999999983 234678899999743 57899999996 56899
Q ss_pred CCCHHHHHHHhhcC
Q psy4285 429 PLDSSLIMSRLDYD 442 (533)
Q Consensus 429 ~~~~~~~~~~l~~~ 442 (533)
+|+.++..+++...
T Consensus 219 Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 219 YLEHDNEAAIVLAK 232 (327)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998765
No 196
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=6.6e-12 Score=127.98 Aligned_cols=102 Identities=26% Similarity=0.358 Sum_probs=91.8
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+|++.++||++|+...++++||+|||++++|++++.+++.+|+.++++++++.+++++++.++..++||+|.|++.|+
T Consensus 151 LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~ 230 (397)
T PRK14955 151 LEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILD 230 (397)
T ss_pred HhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC-----CCCcchhhHHhhhhhh
Q psy4285 81 SAATAH-----ADEVNEDTIFTLLVSR 102 (533)
Q Consensus 81 ~~~~~~-----~~~i~~~~i~~~~~~~ 102 (533)
.+.... ...|+.+.|.++++..
T Consensus 231 kl~~~~~~~~~~~~It~~~v~~~v~~~ 257 (397)
T PRK14955 231 QVIAFSVESEGEGSIRYDKVAELLNYI 257 (397)
T ss_pred HHHHhccccCCCCccCHHHHHHHHCCC
Confidence 876542 2358888877665443
No 197
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.30 E-value=5.7e-11 Score=131.17 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=101.3
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccc----cCcceEEecCCCC----Cch----hHHH
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ----FNAMVLELNASDD----RGI----GIVR 355 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~----~~~~~~~~~~~~~----~~~----~~~~ 355 (533)
.|+++.+..+...+.++..+|++|+||||||||++|+.+|+.+..... .+..++.++.+.. ... ..++
T Consensus 190 iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk 269 (852)
T TIGR03345 190 LGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLK 269 (852)
T ss_pred cCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHH
Confidence 344555555555555667778999999999999999999998743211 1233444433221 111 2344
Q ss_pred HHHHHHHhcccCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHHhcCCCcEEEEEeCCC-----CCCChhhhccc
Q psy4285 356 DQIFQFASTKTMHKSSYKLIILDEADAMTN--------DAQNALRRIIEKFTTNVRFCIICNYL-----SKIPPAIQSRC 422 (533)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--------~~~~~Ll~~le~~~~~~~~I~~~n~~-----~~l~~~l~sR~ 422 (533)
..+...... ..+.||||||++.+.. +..+.|...++. ...++|.+|+.. ..++++|.|||
T Consensus 270 ~ii~e~~~~-----~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT~~e~~~~~~~d~AL~rRf 342 (852)
T TIGR03345 270 SVIDEVKAS-----PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATTWAEYKKYFEKDPALTRRF 342 (852)
T ss_pred HHHHHHHhc-----CCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecCHHHHhhhhhccHHHHHhC
Confidence 444433221 3567999999999953 234567777764 458899998753 35899999999
Q ss_pred eeeeecCCCHHHHHHHhhcC
Q psy4285 423 TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 423 ~~i~~~~~~~~~~~~~l~~~ 442 (533)
..+.+.+|+.++...+|..+
T Consensus 343 ~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 343 QVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred eEEEeCCCCHHHHHHHHHHH
Confidence 99999999999999997655
No 198
>PRK05642 DNA replication initiation factor; Validated
Probab=99.30 E-value=2.8e-11 Score=114.18 Aligned_cols=122 Identities=16% Similarity=0.283 Sum_probs=84.7
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC--
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMT-- 384 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~-- 384 (533)
++++|+||+|+||||+++++++++... +..++.++..+.... .....+.+ ...++|+|||++.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~---~~~v~y~~~~~~~~~--~~~~~~~~--------~~~d~LiiDDi~~~~~~ 112 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR---GEPAVYLPLAELLDR--GPELLDNL--------EQYELVCLDDLDVIAGK 112 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEeeHHHHHhh--hHHHHHhh--------hhCCEEEEechhhhcCC
Confidence 358999999999999999999887433 334455554332111 11111111 234699999999885
Q ss_pred HHHHHHHHHHHHhcC-CCcEEEEEeCCCC----CCChhhhccc---eeeeecCCCHHHHHHHhhc
Q psy4285 385 NDAQNALRRIIEKFT-TNVRFCIICNYLS----KIPPAIQSRC---TRFRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 385 ~~~~~~Ll~~le~~~-~~~~~I~~~n~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~l~~ 441 (533)
+..+..|+.+++... .+..+|++++... ...|.++||| ..+.+.+|+.++...++..
T Consensus 113 ~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 113 ADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 344677888887643 3567788876432 3479999999 6888999999999888873
No 199
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.30 E-value=3.4e-12 Score=110.65 Aligned_cols=109 Identities=27% Similarity=0.342 Sum_probs=73.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHH----HHHhcccCC-C--CCcEEEEEeCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF----QFASTKTMH-K--SSYKLIILDEA 380 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~--~~~~vliiDE~ 380 (533)
+++|+||||||||++|+.+|+.+ +..+..+..+.......+..... .+....... . ..+.+++|||+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~------~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEi 74 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL------GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEI 74 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH------TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSC
T ss_pred CEEEECCCCCCHHHHHHHHHHHh------hcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCc
Confidence 48999999999999999999998 55666666554333322211100 000000000 0 24789999999
Q ss_pred CCCCHHHHHHHHHHHHhc-------------CC------CcEEEEEeCCCC----CCChhhhccc
Q psy4285 381 DAMTNDAQNALRRIIEKF-------------TT------NVRFCIICNYLS----KIPPAIQSRC 422 (533)
Q Consensus 381 d~l~~~~~~~Ll~~le~~-------------~~------~~~~I~~~n~~~----~l~~~l~sR~ 422 (533)
+...++.++.|+.++++. +. +.++|+|+|... .++++++|||
T Consensus 75 n~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 75 NRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp GG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 999999999999999752 12 389999999888 8999999997
No 200
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.30 E-value=3.7e-11 Score=120.38 Aligned_cols=148 Identities=16% Similarity=0.209 Sum_probs=90.7
Q ss_pred hhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHcccccc-CcceEEecC------------CCCCchhHHHHHHH
Q psy4285 293 LCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQF-NAMVLELNA------------SDDRGIGIVRDQIF 359 (533)
Q Consensus 293 ~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~------------~~~~~~~~~~~~~~ 359 (533)
..+.+...+..+ .+++|+||||||||++|+.+|..+.+.... ....+.+.. +...+.......+.
T Consensus 183 ~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~ 260 (459)
T PRK11331 183 TIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFY 260 (459)
T ss_pred HHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHH
Confidence 334444444433 379999999999999999999988543211 111111111 01111111111122
Q ss_pred HHHhcccCCCCCcEEEEEeCCCCCCHHH-HHHHHHHHHh----------------------cCCCcEEEEEeCCCC----
Q psy4285 360 QFASTKTMHKSSYKLIILDEADAMTNDA-QNALRRIIEK----------------------FTTNVRFCIICNYLS---- 412 (533)
Q Consensus 360 ~~~~~~~~~~~~~~vliiDE~d~l~~~~-~~~Ll~~le~----------------------~~~~~~~I~~~n~~~---- 412 (533)
.+.......+..+.+|||||+++...+. ...++.+||. .|.++.+|.|+|..+
T Consensus 261 ~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~ 340 (459)
T PRK11331 261 NFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLA 340 (459)
T ss_pred HHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchh
Confidence 2222111112357899999999998654 6677777662 256788999999877
Q ss_pred CCChhhhccceeeeecC-CCHHHHHHHhhcC
Q psy4285 413 KIPPAIQSRCTRFRFGP-LDSSLIMSRLDYD 442 (533)
Q Consensus 413 ~l~~~l~sR~~~i~~~~-~~~~~~~~~l~~~ 442 (533)
.+|.++++||..+.+.| ++...+.+.+...
T Consensus 341 ~lD~AlrRRF~fi~i~p~~~~~~~~~~l~~~ 371 (459)
T PRK11331 341 VVDYALRRRFSFIDIEPGFDTPQFRNFLLNK 371 (459)
T ss_pred hccHHHHhhhheEEecCCCChHHHHHHHHhc
Confidence 68999999999888877 4555666665543
No 201
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.29 E-value=2.9e-11 Score=129.18 Aligned_cols=154 Identities=21% Similarity=0.239 Sum_probs=100.1
Q ss_pred hchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccc----cCcceEEecCCCCCc-hhHHHH-------
Q psy4285 289 ESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ----FNAMVLELNASDDRG-IGIVRD------- 356 (533)
Q Consensus 289 ~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~----~~~~~~~~~~~~~~~-~~~~~~------- 356 (533)
|++..+..+...+.....++++|+|||||||||+|+.+++....... ....++.+++..... ...+..
T Consensus 158 Gqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~ 237 (615)
T TIGR02903 158 GQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVH 237 (615)
T ss_pred eCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCcc
Confidence 45555555555555555667999999999999999999876632211 134577777654321 001100
Q ss_pred ------HHHHHHhc-------ccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC------------------------
Q psy4285 357 ------QIFQFAST-------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFT------------------------ 399 (533)
Q Consensus 357 ------~~~~~~~~-------~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~------------------------ 399 (533)
..+.+... ........++|||||++.|+...++.|++.+++..
T Consensus 238 ~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~ 317 (615)
T TIGR02903 238 DPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFE 317 (615)
T ss_pred HHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcc
Confidence 00000100 00012346799999999999999999999997531
Q ss_pred ----CCcEEEEE-eCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 400 ----TNVRFCII-CNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 400 ----~~~~~I~~-~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
..+++|.+ ++.+..++++++|||..+.|.+++.+++..++.+.
T Consensus 318 ~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~ 365 (615)
T TIGR02903 318 EGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNA 365 (615)
T ss_pred cCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHH
Confidence 11233333 45677899999999999999999998888877764
No 202
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.29 E-value=1.2e-11 Score=125.14 Aligned_cols=102 Identities=24% Similarity=0.392 Sum_probs=93.1
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
+|+||++++||++|+++.+++++|+|||+.+.|++++.+++.+|+.++++++++.++++++..++..++||+|.|++.++
T Consensus 141 le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 141 LEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred HhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLVSR 102 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~ 102 (533)
.+.......|+.+.|.+++...
T Consensus 221 kl~~~~~~~it~~~v~~~~~~~ 242 (355)
T TIGR02397 221 QLISFGNGNITYEDVNELLGLV 242 (355)
T ss_pred HHHhhcCCCCCHHHHHHHhCCC
Confidence 9877555568998887655443
No 203
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.29 E-value=2.3e-11 Score=122.23 Aligned_cols=131 Identities=24% Similarity=0.266 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHhhhchhhhhhhccccc-----------cc-------CCCceeEeCCCCCChHHHHHHHHHHHcccc
Q psy4285 273 YPTKTEITNILRWLLNESMDLCYKINRFID-----------EN-------ELPHLLFYGPPGTGKTTTILACARKLYTKA 334 (533)
Q Consensus 273 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~-----------~~-------~~~~~ll~GppGtGKT~la~~la~~l~~~~ 334 (533)
.+.+..+...+.....||+++.+.+...+. .. ...+++|+||||||||++|+++|+.+
T Consensus 65 ~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l---- 140 (413)
T TIGR00382 65 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL---- 140 (413)
T ss_pred CCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc----
Confidence 677888888888888888888776644331 11 12469999999999999999999887
Q ss_pred ccCcceEEecCCCCC-----chhHHHHHHHHHHhccc--CCCCCcEEEEEeCCCCCCH--------------HHHHHHHH
Q psy4285 335 QFNAMVLELNASDDR-----GIGIVRDQIFQFASTKT--MHKSSYKLIILDEADAMTN--------------DAQNALRR 393 (533)
Q Consensus 335 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~vliiDE~d~l~~--------------~~~~~Ll~ 393 (533)
+.++..++++... +.+ ....+........ .....+.+|+|||+|.+.. ..|++|++
T Consensus 141 --~~pf~~~da~~L~~~gyvG~d-~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~ 217 (413)
T TIGR00382 141 --NVPFAIADATTLTEAGYVGED-VENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLK 217 (413)
T ss_pred --CCCeEEechhhcccccccccc-HHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHH
Confidence 4445545443321 111 1222222111110 0123457999999999976 58999999
Q ss_pred HHHhc-------------CCCcEEEEEeCC
Q psy4285 394 IIEKF-------------TTNVRFCIICNY 410 (533)
Q Consensus 394 ~le~~-------------~~~~~~I~~~n~ 410 (533)
+||.. ..+..+|.|+|.
T Consensus 218 iLeG~~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 218 IIEGTVANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred HhhccceecccCCCccccCCCeEEEEcCCc
Confidence 99632 134557777775
No 204
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=2.2e-11 Score=123.57 Aligned_cols=100 Identities=23% Similarity=0.341 Sum_probs=91.6
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+|+.+++||++|+...++.|+|+|||++++|++++++++..|+.+++.++|+.+++++++.++..++||+|++++.|+
T Consensus 132 le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~le 211 (367)
T PRK14970 132 LEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFD 211 (367)
T ss_pred HhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLV 100 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~ 100 (533)
.+.......|+.+.+.++++
T Consensus 212 kl~~y~~~~it~~~v~~~~~ 231 (367)
T PRK14970 212 RVVTFCGKNITRQAVTENLN 231 (367)
T ss_pred HHHHhcCCCCCHHHHHHHhC
Confidence 98875444588888766544
No 205
>KOG0730|consensus
Probab=99.27 E-value=4.6e-11 Score=122.00 Aligned_cols=151 Identities=23% Similarity=0.313 Sum_probs=111.9
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCC------CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD------DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
..+|+|||||||||.+++++|++. +..++.++++. +.+...+|..+....... .+.+++|||+
T Consensus 219 rg~Ll~gppg~Gkt~l~~aVa~e~------~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~-----~psii~IdEl 287 (693)
T KOG0730|consen 219 RGLLLYGPPGTGKTFLVRAVANEY------GAFLFLINGPELISKFPGETESNLRKAFAEALKFQ-----VPSIIFIDEL 287 (693)
T ss_pred CCccccCCCCCChHHHHHHHHHHh------CceeEecccHHHHHhcccchHHHHHHHHHHHhccC-----CCeeEeHHhH
Confidence 459999999999999999999997 66677777764 233445555544433322 2789999999
Q ss_pred CCCCH----------HHHHHHHHHHHhcC--CCcEEEEEeCCCCCCChhhhc-cce-eeeecCCCHHHHHHHhhcC----
Q psy4285 381 DAMTN----------DAQNALRRIIEKFT--TNVRFCIICNYLSKIPPAIQS-RCT-RFRFGPLDSSLIMSRLDYD---- 442 (533)
Q Consensus 381 d~l~~----------~~~~~Ll~~le~~~--~~~~~I~~~n~~~~l~~~l~s-R~~-~i~~~~~~~~~~~~~l~~~---- 442 (533)
|.+.+ .....|+.+++... .++.++.++|++..+++++++ ||+ .+.+.-|+..+..++++..
T Consensus 288 d~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~ 367 (693)
T KOG0730|consen 288 DALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKM 367 (693)
T ss_pred hhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhc
Confidence 99974 23566888888644 678888899999999999997 994 7888888888888888876
Q ss_pred ----HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy4285 443 ----DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLL 477 (533)
Q Consensus 443 ----~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~ 477 (533)
..++..+.. .++||.+.|+...+...
T Consensus 368 ~~~~~~~l~~iA~---------~thGyvGaDL~~l~~ea 397 (693)
T KOG0730|consen 368 NLLSDVDLEDIAV---------STHGYVGADLAALCREA 397 (693)
T ss_pred CCcchhhHHHHHH---------HccchhHHHHHHHHHHH
Confidence 134444444 66778777776655544
No 206
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=8.5e-12 Score=123.89 Aligned_cols=80 Identities=24% Similarity=0.402 Sum_probs=72.9
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++++|||+|+.+++++|||+|||+.++|++++.+++.++|++.+...+ ++++.+..+++.|+|++|+|+++++
T Consensus 165 LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~ 242 (351)
T PRK09112 165 LEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLN 242 (351)
T ss_pred HhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 69999999999999999999999999999999999999999999998654443 6688899999999999999999987
Q ss_pred HH
Q psy4285 81 SA 82 (533)
Q Consensus 81 ~~ 82 (533)
.-
T Consensus 243 ~~ 244 (351)
T PRK09112 243 YG 244 (351)
T ss_pred cC
Confidence 53
No 207
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.27 E-value=2.9e-11 Score=119.57 Aligned_cols=179 Identities=15% Similarity=0.141 Sum_probs=119.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHH----HHh----cccC-CCCCcEEEEEe
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ----FAS----TKTM-HKSSYKLIILD 378 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~-~~~~~~vliiD 378 (533)
+++++|++||||+.+|+.|....... ...+++.+|++.........++++. |.. .... ..+..+.||+|
T Consensus 103 ~vLi~GetGtGKel~A~~iH~~s~r~--~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLD 180 (403)
T COG1221 103 PVLIIGETGTGKELFARLIHALSARR--AEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLD 180 (403)
T ss_pred cEEEecCCCccHHHHHHHHHHhhhcc--cCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehh
Confidence 59999999999999999999443221 3678999999876554444333221 111 0111 13568899999
Q ss_pred CCCCCCHHHHHHHHHHHHh-----------cCCCcEEEEEeCC--CCCCCh--hhhccceeeeecCCCHHHHHHHhhcCH
Q psy4285 379 EADAMTNDAQNALRRIIEK-----------FTTNVRFCIICNY--LSKIPP--AIQSRCTRFRFGPLDSSLIMSRLDYDD 443 (533)
Q Consensus 379 E~d~l~~~~~~~Ll~~le~-----------~~~~~~~I~~~n~--~~~l~~--~l~sR~~~i~~~~~~~~~~~~~l~~~~ 443 (533)
|++.|+++.|..|++.||+ .+.++++|++|+. .+.+.. ++.+|+....+.-|+ |+..+
T Consensus 181 EI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPp-------LrER~ 253 (403)
T COG1221 181 EIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPP-------LRERK 253 (403)
T ss_pred hhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCC-------hhhch
Confidence 9999999999999999997 3577999999863 345555 788877655555555 33334
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy4285 444 ISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498 (533)
Q Consensus 444 ~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (533)
.|+..+++.+-.... ...+.+.........+.+..+.||++++ ++-+.+..+
T Consensus 254 ~Di~~L~e~Fl~~~~--~~l~~~~~~~~~~a~~~L~~y~~pGNir-ELkN~Ve~~ 305 (403)
T COG1221 254 EDILLLAEHFLKSEA--RRLGLPLSVDSPEALRALLAYDWPGNIR-ELKNLVERA 305 (403)
T ss_pred hhHHHHHHHHHHHHH--HHcCCCCCCCCHHHHHHHHhCCCCCcHH-HHHHHHHHH
Confidence 455555554333333 3345554444467778888999999987 444444433
No 208
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.27 E-value=4.8e-12 Score=104.04 Aligned_cols=108 Identities=23% Similarity=0.208 Sum_probs=60.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHH------HHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQ------IFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
|+|+.|+||+|||++|+++|+.+ +..+.++......-...+... .+.+.-... +--..++++||+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~------~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~G--Pif~~ill~DEiN 72 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL------GLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPG--PIFTNILLADEIN 72 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT------T--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE---TT-SSEEEEETGG
T ss_pred CEeeECCCccHHHHHHHHHHHHc------CCceeEEEecCCCCcccceeeeeeccCCCeeEeecC--hhhhceeeecccc
Confidence 68999999999999999999998 444444443211111111100 000100110 1124699999999
Q ss_pred CCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCCC-----CCChhhhccce
Q psy4285 382 AMTNDAQNALRRIIEKF-----------TTNVRFCIICNYLS-----KIPPAIQSRCT 423 (533)
Q Consensus 382 ~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~~-----~l~~~l~sR~~ 423 (533)
+.++..|++|+++|+|. +....+|.|.|..+ .+++++++||.
T Consensus 73 rappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 73 RAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp GS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred cCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 99999999999999874 34456666778665 68999999984
No 209
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=8.3e-12 Score=121.55 Aligned_cols=72 Identities=21% Similarity=0.371 Sum_probs=63.9
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
+||||++|+|||+|+.+++++|||+|||+.++|++|+.+++.+||.. .+++ . ...+++.++|++.+|+.+++
T Consensus 132 LEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~----~~~~--~--~~~~l~l~~G~p~~A~~~~~ 203 (319)
T PRK06090 132 LEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKG----QGIT--V--PAYALKLNMGSPLKTLAMMK 203 (319)
T ss_pred hcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHH----cCCc--h--HHHHHHHcCCCHHHHHHHhC
Confidence 69999999999999999999999999999999999999999999973 4443 2 34678999999999998864
No 210
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=8.6e-12 Score=121.62 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=66.5
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++++|||+|+.+++|+|||||||+.++|++|+.+++.+||.+ .+ +++.....++..++|++.+|+.+++
T Consensus 137 LEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~~ 210 (319)
T PRK08769 137 LEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWLR 210 (319)
T ss_pred hhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHhc
Confidence 69999999999999999999999999999999999999999999973 33 4456566789999999999988774
Q ss_pred H
Q psy4285 81 S 81 (533)
Q Consensus 81 ~ 81 (533)
.
T Consensus 211 ~ 211 (319)
T PRK08769 211 E 211 (319)
T ss_pred C
Confidence 3
No 211
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.27 E-value=7.1e-11 Score=116.00 Aligned_cols=156 Identities=13% Similarity=0.109 Sum_probs=91.9
Q ss_pred hhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccc-------cC--------------------cc
Q psy4285 287 LNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ-------FN--------------------AM 339 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~-------~~--------------------~~ 339 (533)
..|+++....+.-.+-....+|+||+|+||||||++|+++++.+-+... .. .+
T Consensus 10 i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 89 (334)
T PRK13407 10 IVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTP 89 (334)
T ss_pred hCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCc
Confidence 3466776665553332123458999999999999999999998732110 00 00
Q ss_pred eEEecC--CC--CCchhHHHHHH--HHHHhccc-CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-------------C
Q psy4285 340 VLELNA--SD--DRGIGIVRDQI--FQFASTKT-MHKSSYKLIILDEADAMTNDAQNALRRIIEKF-------------T 399 (533)
Q Consensus 340 ~~~~~~--~~--~~~~~~~~~~~--~~~~~~~~-~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~-------------~ 399 (533)
+..+.. ++ ..|.-.+...+ +.+..... ...+..++|++||++.+++..++.|++.|++. +
T Consensus 90 ~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p 169 (334)
T PRK13407 90 VVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHP 169 (334)
T ss_pred cccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecC
Confidence 000000 00 11111111111 00100111 11234579999999999999999999999864 2
Q ss_pred CCcEEEEEeCCCC-CCChhhhccce-eeeecCCCH-HHHHHHhhcC
Q psy4285 400 TNVRFCIICNYLS-KIPPAIQSRCT-RFRFGPLDS-SLIMSRLDYD 442 (533)
Q Consensus 400 ~~~~~I~~~n~~~-~l~~~l~sR~~-~i~~~~~~~-~~~~~~l~~~ 442 (533)
....++.++|..+ .+.+++.+||. .+.+.++++ ++..+++.+.
T Consensus 170 ~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 170 ARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred CCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHh
Confidence 3345555567544 68999999994 677777766 5656666553
No 212
>KOG0741|consensus
Probab=99.27 E-value=6.1e-12 Score=124.48 Aligned_cols=149 Identities=21% Similarity=0.289 Sum_probs=102.2
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCC------CCchhHHHHHHHHHHhccc--CCCCCcEEEEEeCC
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD------DRGIGIVRDQIFQFASTKT--MHKSSYKLIILDEA 380 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~~vliiDE~ 380 (533)
+|||||||||||.+||.|.+.+.... -.-+|+++ +.++..+|+++........ ...++-.|+|+||+
T Consensus 259 iLLyGPPGTGKTLiARqIGkMLNAre-----PKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEi 333 (744)
T KOG0741|consen 259 ILLYGPPGTGKTLIARQIGKMLNARE-----PKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEI 333 (744)
T ss_pred EEEECCCCCChhHHHHHHHHHhcCCC-----CcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhh
Confidence 89999999999999999999985442 12344443 3456677777655433211 11356789999999
Q ss_pred CCCCH-------------HHHHHHHHHHH--hcCCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcC
Q psy4285 381 DAMTN-------------DAQNALRRIIE--KFTTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 381 d~l~~-------------~~~~~Ll~~le--~~~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~ 442 (533)
|.+.. ...|.|+.-|+ +.-.|+.+|..||+.+.+|++|++ |+. .+.+.-|++.-..+++.-.
T Consensus 334 DAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IH 413 (744)
T KOG0741|consen 334 DAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIH 413 (744)
T ss_pred HHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhh
Confidence 98743 34677777776 345788999999999999999999 884 6666666666555555433
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Q psy4285 443 ------------DISFFNIIIWYIKIQEIKIEKGLALTDIL 471 (533)
Q Consensus 443 ------------~~~~~~ll~~~~~l~~l~~~~~~~~~di~ 471 (533)
.-++.++.. .+..+|+.++.
T Consensus 414 T~rMre~~~l~~dVdl~elA~---------lTKNfSGAEle 445 (744)
T KOG0741|consen 414 TKRMRENNKLSADVDLKELAA---------LTKNFSGAELE 445 (744)
T ss_pred hhhhhhcCCCCCCcCHHHHHH---------HhcCCchhHHH
Confidence 234444444 56677776653
No 213
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.27 E-value=7.7e-10 Score=110.27 Aligned_cols=145 Identities=21% Similarity=0.184 Sum_probs=93.3
Q ss_pred chhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC------chhHHHHHH---HH
Q psy4285 290 SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR------GIGIVRDQI---FQ 360 (533)
Q Consensus 290 ~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~---~~ 360 (533)
.++........+..++ |++|.||||||||++|+.+|+.+ +..+..+.+.... +...+.... +.
T Consensus 29 ~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l------~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~ 100 (329)
T COG0714 29 DEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARAL------GLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGE 100 (329)
T ss_pred cHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHh------CCCeEEEecCCCCCHHHhcCchhHhhhhccCCe
Confidence 3333333333333343 79999999999999999999998 5566666654332 222222221 11
Q ss_pred HHhc-ccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc------------CCCcEEEEEeC-----CCCCCChhhhccc
Q psy4285 361 FAST-KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF------------TTNVRFCIICN-----YLSKIPPAIQSRC 422 (533)
Q Consensus 361 ~~~~-~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~------------~~~~~~I~~~n-----~~~~l~~~l~sR~ 422 (533)
+... .+...+-..++++|||++..+..+++|+..|++. +....+|.|+| ....+++++++||
T Consensus 101 ~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf 180 (329)
T COG0714 101 FRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRF 180 (329)
T ss_pred EEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhE
Confidence 1101 1111111149999999999999999999999872 23455666668 4557899999999
Q ss_pred -eeeeecCC-CHHHHHHHhhcC
Q psy4285 423 -TRFRFGPL-DSSLIMSRLDYD 442 (533)
Q Consensus 423 -~~i~~~~~-~~~~~~~~l~~~ 442 (533)
..+.+.+| +..+...++.+.
T Consensus 181 ~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 181 LLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred EEEEecCCCCchHHHHHHHHhC
Confidence 78888888 444444444444
No 214
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=9.8e-12 Score=121.37 Aligned_cols=76 Identities=17% Similarity=0.264 Sum_probs=66.3
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++++|||+|+.+++++|||+|||+.++|++++.+++.+||.... ..++.....++..++|++.+|+.+++
T Consensus 131 LEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~ 205 (325)
T PRK06871 131 LEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLE 205 (325)
T ss_pred hcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhh
Confidence 7999999999999999999999999999999999999999999998543 22344566788999999999988765
Q ss_pred H
Q psy4285 81 S 81 (533)
Q Consensus 81 ~ 81 (533)
.
T Consensus 206 ~ 206 (325)
T PRK06871 206 Q 206 (325)
T ss_pred C
Confidence 4
No 215
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.26 E-value=9.5e-12 Score=110.84 Aligned_cols=101 Identities=24% Similarity=0.315 Sum_probs=72.9
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHc-cccccCcceEEecCCCCCc----hhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLY-TKAQFNAMVLELNASDDRG----IGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
.+++|.||+|||||.+|+++++.++ +. ..+++.++++.... ...+...+........ .....||++||+|
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~---~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~--~~~~gVVllDEid 78 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGS---ERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVG--AEEGGVVLLDEID 78 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SS---CCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHH--HHHHTEEEEETGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCC---ccchHHHhhhcccccchHHhhhhhhhhcccceee--ccchhhhhhHHHh
Confidence 3589999999999999999999996 33 45778888776655 3333333222110000 0123499999999
Q ss_pred CCCH-----------HHHHHHHHHHHhc-----------CCCcEEEEEeCCCC
Q psy4285 382 AMTN-----------DAQNALRRIIEKF-----------TTNVRFCIICNYLS 412 (533)
Q Consensus 382 ~l~~-----------~~~~~Ll~~le~~-----------~~~~~~I~~~n~~~ 412 (533)
+..+ ..++.|++++|+. -.++.||+|||.-.
T Consensus 79 Ka~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 79 KAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp GCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 9999 9999999999863 36788999998654
No 216
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.26 E-value=1.1e-10 Score=115.62 Aligned_cols=168 Identities=17% Similarity=0.147 Sum_probs=109.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHh----------cccCCCCCcEEEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS----------TKTMHKSSYKLIIL 377 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~vlii 377 (533)
+++|+|++||||+++|+++....... ..+++.+++..... ..+...+..... ......+..++|+|
T Consensus 31 pVlI~GE~GtGK~~lA~~iH~~s~r~---~~pfv~v~c~~~~~-~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l 106 (326)
T PRK11608 31 PVLIIGERGTGKELIASRLHYLSSRW---QGPFISLNCAALNE-NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFL 106 (326)
T ss_pred CEEEECCCCCcHHHHHHHHHHhCCcc---CCCeEEEeCCCCCH-HHHHHHHccccccccCCcccccCCchhccCCCeEEe
Confidence 69999999999999999998654222 46788888887432 222222211000 00011345689999
Q ss_pred eCCCCCCHHHHHHHHHHHHhcC-----------CCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHHHh
Q psy4285 378 DEADAMTNDAQNALRRIIEKFT-----------TNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 378 DE~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~~l 439 (533)
||++.|+...|..|++.+++.. .++++|++|+.. ..+.+.|..|+....+.-|+ |
T Consensus 107 ~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPp-------L 179 (326)
T PRK11608 107 DELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPP-------L 179 (326)
T ss_pred CChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCC-------h
Confidence 9999999999999999997532 257899988753 35778888898766666666 4
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhcCCChhHH
Q psy4285 440 DYDDISFFNIIIWYIKIQEIKIEKGLAL-TDILTEISLLVHRLEIPESML 488 (533)
Q Consensus 440 ~~~~~~~~~ll~~~~~l~~l~~~~~~~~-~di~~~~~~~~~~~~~~~~~~ 488 (533)
+..++|+..+++.+-. .+....+.+. ..+-......+..+.||++++
T Consensus 180 ReR~eDI~~L~~~fl~--~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvr 227 (326)
T PRK11608 180 RERQSDIMLMAEHFAI--QMCRELGLPLFPGFTERARETLLNYRWPGNIR 227 (326)
T ss_pred hhhhhhHHHHHHHHHH--HHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHH
Confidence 4444455555543211 1112223321 235567788889999999987
No 217
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=2.4e-11 Score=129.67 Aligned_cols=101 Identities=27% Similarity=0.396 Sum_probs=93.3
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+|+.+++|||+|+..++++++|+|||+.+.|++++..++..++.+++.++++.++++++..++..++||+|.|++.|+
T Consensus 144 LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 144 LEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLVS 101 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~ 101 (533)
.+....+..|+.+.|.++++.
T Consensus 224 kL~~y~~~~It~e~V~~ll~~ 244 (585)
T PRK14950 224 QLATTYGGEISLSQVQSLLGI 244 (585)
T ss_pred HHHHhcCCCCCHHHHHHHhcC
Confidence 987755567999888766554
No 218
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.25 E-value=5.9e-11 Score=110.63 Aligned_cols=130 Identities=23% Similarity=0.330 Sum_probs=83.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCc--hhHHHH-HHHHHHhcccCCCCCcEEEEEeCCCCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG--IGIVRD-QIFQFASTKTMHKSSYKLIILDEADAMT 384 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~vliiDE~d~l~ 384 (533)
.+++|||+|+||||+..++++++.... .+..++.+++.+... ...++. ....+... -...++|+||+++.+.
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~-~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~----~~~~DlL~iDDi~~l~ 110 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQH-PGKRVVYLSAEEFIREFADALRDGEIEEFKDR----LRSADLLIIDDIQFLA 110 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHC-TTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHH----HCTSSEEEEETGGGGT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhcc-ccccceeecHHHHHHHHHHHHHcccchhhhhh----hhcCCEEEEecchhhc
Confidence 389999999999999999999886532 144556665433110 000000 01111111 0356899999999997
Q ss_pred HH--HHHHHHHHHHhc-CCCcEEEEEeCCC----CCCChhhhccc---eeeeecCCCHHHHHHHhhcC
Q psy4285 385 ND--AQNALRRIIEKF-TTNVRFCIICNYL----SKIPPAIQSRC---TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 385 ~~--~~~~Ll~~le~~-~~~~~~I~~~n~~----~~l~~~l~sR~---~~i~~~~~~~~~~~~~l~~~ 442 (533)
.. .+..|+.+++.. ..+..+|++++.+ ..+++.++||+ ..+.+.+|+.+..+.++.+.
T Consensus 111 ~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 111 GKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp THHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHH
Confidence 64 478888888753 2456788888543 24788999998 48999999999999998876
No 219
>PRK09183 transposase/IS protein; Provisional
Probab=99.24 E-value=7.5e-12 Score=119.57 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=103.2
Q ss_pred ccCchHHhhcHHHHHHhhcCCCCCccccccccCCCCHHHHHHHHHHHhhh-chhhhhhhcc--cccccCCCceeEeCCCC
Q psy4285 240 SDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNE-SMDLCYKINR--FIDENELPHLLFYGPPG 316 (533)
Q Consensus 240 s~~di~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~l~~--~~~~~~~~~~ll~GppG 316 (533)
......+.+..|...+...++....+...+..++|...++.++......+ ....+..+.. ++..+ .+++|+||||
T Consensus 35 ~~~~~~e~l~~ll~~E~~~R~~~~~~~~~k~a~~p~~~~l~~fd~~~~~~~~~~~i~~L~~~~~i~~~--~~v~l~Gp~G 112 (259)
T PRK09183 35 QEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERN--ENIVLLGPSG 112 (259)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcHhhcccccCCCCCHHHHHHHhcCCchhcC--CeEEEEeCCC
Confidence 44567888888888888777666667788888999887777764332222 2334444432 34433 3799999999
Q ss_pred CChHHHHHHHHHHHccccccCcceEEecCCCCCch-hH--HHHHHHHHHhcccCCCCCcEEEEEeCCCCC--CHHHHHHH
Q psy4285 317 TGKTTTILACARKLYTKAQFNAMVLELNASDDRGI-GI--VRDQIFQFASTKTMHKSSYKLIILDEADAM--TNDAQNAL 391 (533)
Q Consensus 317 tGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~vliiDE~d~l--~~~~~~~L 391 (533)
|||||++.+++..+... +..+..++..+.... .. ....+....... ....+++||||++.. +.+.++.|
T Consensus 113 tGKThLa~al~~~a~~~---G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~---~~~~dlLiiDdlg~~~~~~~~~~~l 186 (259)
T PRK09183 113 VGKTHLAIALGYEAVRA---GIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG---VMAPRLLIIDEIGYLPFSQEEANLF 186 (259)
T ss_pred CCHHHHHHHHHHHHHHc---CCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH---hcCCCEEEEcccccCCCChHHHHHH
Confidence 99999999998875332 334444443221100 00 000010111000 134579999999985 45666789
Q ss_pred HHHHHhcCCCcEEEEEeCCCC
Q psy4285 392 RRIIEKFTTNVRFCIICNYLS 412 (533)
Q Consensus 392 l~~le~~~~~~~~I~~~n~~~ 412 (533)
+++++....+..+|+|||.+.
T Consensus 187 f~li~~r~~~~s~iiTsn~~~ 207 (259)
T PRK09183 187 FQVIAKRYEKGSMILTSNLPF 207 (259)
T ss_pred HHHHHHHHhcCcEEEecCCCH
Confidence 999987655567899998764
No 220
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.24 E-value=1.1e-10 Score=117.34 Aligned_cols=168 Identities=16% Similarity=0.172 Sum_probs=116.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHH-----HHhcc-----cC-CCCCcEEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ-----FASTK-----TM-HKSSYKLII 376 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----~~-~~~~~~vli 376 (533)
.+|+.|.+||||..+|++|.+..-.. ..+|+.+||... ....+...+.. |.... .. ..+..+.||
T Consensus 270 tVLi~GESGTGKElfA~~IH~~S~R~---~~PFIaiNCaAi-Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLF 345 (560)
T COG3829 270 TVLILGESGTGKELFARAIHNLSPRA---NGPFIAINCAAI-PETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLF 345 (560)
T ss_pred cEEEecCCCccHHHHHHHHHhcCccc---CCCeEEEecccC-CHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEE
Confidence 59999999999999999999865433 568999998763 22222222211 11110 11 124578999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHHH
Q psy4285 377 LDEADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMSR 438 (533)
Q Consensus 377 iDE~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~~ 438 (533)
+|||..|+...|..|++.|++. +.++++|.+||.. ..+-+.|.-|+.++.+.-|| ++++
T Consensus 346 LDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPP---LReR 422 (560)
T COG3829 346 LDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPP---LRER 422 (560)
T ss_pred ehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCC---cccC
Confidence 9999999999999999999863 4679999999864 25667777888888888777 3344
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHH
Q psy4285 439 LDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488 (533)
Q Consensus 439 l~~~~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~ 488 (533)
-..+|.-+..+++ ......+-....+.......+..+.||+++|
T Consensus 423 ~eDI~~L~~~Fl~------k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVR 466 (560)
T COG3829 423 KEDIPLLAEYFLD------KFSRRYGRNVKGLSPDALALLLRYDWPGNVR 466 (560)
T ss_pred cchHHHHHHHHHH------HHHHHcCCCcccCCHHHHHHHHhCCCCchHH
Confidence 4444444444444 2223345555556666778889999999998
No 221
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.23 E-value=1.2e-10 Score=129.15 Aligned_cols=148 Identities=14% Similarity=0.145 Sum_probs=103.0
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccc----cCcceEEecCCCCC----c----hhHHH
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ----FNAMVLELNASDDR----G----IGIVR 355 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~----~~~~~~~~~~~~~~----~----~~~~~ 355 (533)
.|++..+.++...+.+...++++|+||||||||++|+.+|+.+..... .+..++.++..... . ...++
T Consensus 181 igr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk 260 (857)
T PRK10865 181 IGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLK 260 (857)
T ss_pred CCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHH
Confidence 345555555555566666678999999999999999999998743211 13455555433211 1 12344
Q ss_pred HHHHHHHhcccCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHHhcCCCcEEEEEeCCCC-----CCChhhhccc
Q psy4285 356 DQIFQFASTKTMHKSSYKLIILDEADAMTN--------DAQNALRRIIEKFTTNVRFCIICNYLS-----KIPPAIQSRC 422 (533)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--------~~~~~Ll~~le~~~~~~~~I~~~n~~~-----~l~~~l~sR~ 422 (533)
..+...... ..+.||||||+|.+.. +.++.|...++. ...++|.+|+..+ .+++++.|||
T Consensus 261 ~~~~~~~~~-----~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaTt~~e~r~~~~~d~al~rRf 333 (857)
T PRK10865 261 GVLNDLAKQ-----EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQYIEKDAALERRF 333 (857)
T ss_pred HHHHHHHHc-----CCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcCCCHHHHHHhhhcHHHHhhC
Confidence 444333221 3567999999999963 356777777764 4688999987765 5899999999
Q ss_pred eeeeecCCCHHHHHHHhhcC
Q psy4285 423 TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 423 ~~i~~~~~~~~~~~~~l~~~ 442 (533)
..+.+..|+.++...+++.+
T Consensus 334 ~~i~v~eP~~~~~~~iL~~l 353 (857)
T PRK10865 334 QKVFVAEPSVEDTIAILRGL 353 (857)
T ss_pred CEEEeCCCCHHHHHHHHHHH
Confidence 99999999999999888766
No 222
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.23 E-value=1.6e-10 Score=114.86 Aligned_cols=162 Identities=17% Similarity=0.276 Sum_probs=117.2
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHH-------HHHHhhcCCCCCHHHHHHHHHhcCCCHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRL-------DYVIEQEKVNVTPDGKKAIIDLSDGDMR 73 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~g~~r 73 (533)
||+|+++++||++||.++++.|+|+|||..+.|++|+.++...++ ..++.++++.++++++..++..+.||.|
T Consensus 125 le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r 204 (316)
T PHA02544 125 MEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFR 204 (316)
T ss_pred HHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHH
Confidence 588999999999999999999999999999999999998876543 4456678999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcchhhHHhhh-------hhhccccchhHHHHH-----hchHHHHhhc------CCChhhHHHHH
Q psy4285 74 KVLNILQSAATAHADEVNEDTIFTLL-------VSRVEKYRPSTLDEL-----VSHQDIISTI------EIPESMLVDLV 135 (533)
Q Consensus 74 ~a~~~l~~~~~~~~~~i~~~~i~~~~-------~~~~ek~~~~~l~~l-----ls~~~~l~~l------~~~~~~~~~~~ 135 (533)
++++.++.++. ...++.+.+..+. ..|............ .+..+++..+ .+....+....
T Consensus 205 ~~l~~l~~~~~--~~~i~~~~l~~~~~~~~~~l~~~l~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 282 (316)
T PHA02544 205 RTINELQRYAS--TGKIDAGILSEVTNSDIDDVVEALKAKDFKAVRALAPNYANDYASFVGKLYDELYPQVTPPSIIRLI 282 (316)
T ss_pred HHHHHHHHHHc--cCCCCHHHHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHhccCHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999998764 2356654432211 111111121111111 1111222221 23444556677
Q ss_pred hhccCccccccCCCChhhHHHHHHHHHhc
Q psy4285 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNS 164 (533)
Q Consensus 136 ~~~~~~~~~~~~G~~~~~~l~~~~~~~~~ 164 (533)
..++..+.++..|.++..++++++..+|+
T Consensus 283 ~~l~~~~~~~~~~~~~~l~le~~l~~~~~ 311 (316)
T PHA02544 283 EIIGENNQYHGFAADQEIHLLYLLTQLML 311 (316)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 77888999999999999999999999985
No 223
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.22 E-value=1.8e-10 Score=122.55 Aligned_cols=167 Identities=15% Similarity=0.142 Sum_probs=109.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHH-HH----HHh----ccc-CCCCCcEEEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI-FQ----FAS----TKT-MHKSSYKLIIL 377 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~----~~~-~~~~~~~vlii 377 (533)
+++|+|++||||+++|++++...... +.+++.+++..... ..+...+ +. +.. ... ...+..++|||
T Consensus 221 pvli~Ge~GtGK~~lA~~ih~~s~r~---~~pfv~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~l 296 (534)
T TIGR01817 221 TVLLRGESGTGKELIAKAIHYLSPRA---KRPFVKVNCAALSE-TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFL 296 (534)
T ss_pred CEEEECCCCccHHHHHHHHHHhCCCC---CCCeEEeecCCCCH-HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEE
Confidence 59999999999999999999875332 56888999876532 2222211 10 000 000 11345689999
Q ss_pred eCCCCCCHHHHHHHHHHHHhcC-----------CCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHHHh
Q psy4285 378 DEADAMTNDAQNALRRIIEKFT-----------TNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 378 DE~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~~l 439 (533)
||++.++.+.|..|++.+++.. .++++|++|+.. ..+.+.|..|+..+.+.-|+ |
T Consensus 297 dei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPp-------L 369 (534)
T TIGR01817 297 DEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPP-------L 369 (534)
T ss_pred echhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCC-------c
Confidence 9999999999999999998632 247899998753 35677888888766665555 3
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHH
Q psy4285 440 DYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488 (533)
Q Consensus 440 ~~~~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~ 488 (533)
+..++|+..+++.+- .++....+.. ..+-......+..+.||++++
T Consensus 370 reR~eDi~~L~~~~l--~~~~~~~~~~-~~~s~~a~~~L~~~~WPGNvr 415 (534)
T TIGR01817 370 RERREDIPLLAEAFL--EKFNRENGRP-LTITPSAIRVLMSCKWPGNVR 415 (534)
T ss_pred ccccccHHHHHHHHH--HHHHHHcCCC-CCCCHHHHHHHHhCCCCChHH
Confidence 333444444444321 1121222333 345667888899999999987
No 224
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=2.3e-11 Score=119.77 Aligned_cols=76 Identities=16% Similarity=0.281 Sum_probs=66.9
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++++|||+|+.++.++|||+|||+.++|++++.+++.+||.+.. -..+++....++..++|++.+|+.+++
T Consensus 130 LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~----~~~~~~~~~~~l~la~Gsp~~A~~l~~ 205 (328)
T PRK05707 130 LEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL----PESDERERIELLTLAGGSPLRALQLHE 205 (328)
T ss_pred HhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc----ccCChHHHHHHHHHcCCCHHHHHHHHC
Confidence 6999999999999999999999999999999999999999999997532 123466677889999999999998764
No 225
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.21 E-value=4.4e-10 Score=110.56 Aligned_cols=155 Identities=12% Similarity=0.095 Sum_probs=97.1
Q ss_pred hhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCc-ceEEecC--------------------
Q psy4285 287 LNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNA-MVLELNA-------------------- 345 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~-~~~~~~~-------------------- 345 (533)
..||++....|.-.+.+....+++|+|++|||||++|+++++.+.+...... ++. ..+
T Consensus 19 ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~p~~~~~~~~~~~~~~~~~ 97 (350)
T CHL00081 19 IVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSDPELMSDEVREAIQNGETI 97 (350)
T ss_pred HhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCChhhhchhhhhhhcccccc
Confidence 4577777777777666666677999999999999999999988743221100 010 000
Q ss_pred ------------CCCCchhH------HHHHHHHHH---hcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc------
Q psy4285 346 ------------SDDRGIGI------VRDQIFQFA---STKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF------ 398 (533)
Q Consensus 346 ------------~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~------ 398 (533)
+.+...+. +...+..-. .......+..++|++||++.+++..|+.|++.|++.
T Consensus 98 ~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier 177 (350)
T CHL00081 98 ETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASGWNTVER 177 (350)
T ss_pred cceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhCCeEEee
Confidence 00001111 111110000 001111345789999999999999999999999762
Q ss_pred -------CCCcEEEEEeCCCC-CCChhhhccce-eeeecCCC-HHHHHHHhhcC
Q psy4285 399 -------TTNVRFCIICNYLS-KIPPAIQSRCT-RFRFGPLD-SSLIMSRLDYD 442 (533)
Q Consensus 399 -------~~~~~~I~~~n~~~-~l~~~l~sR~~-~i~~~~~~-~~~~~~~l~~~ 442 (533)
+..+.+|.+.|..+ .+.+++.+||. .+.+.+++ .++..+++.+.
T Consensus 178 ~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 178 EGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQR 231 (350)
T ss_pred CCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhh
Confidence 22334444446544 69999999994 77888777 47777777664
No 226
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.21 E-value=3.7e-10 Score=117.75 Aligned_cols=181 Identities=17% Similarity=0.204 Sum_probs=114.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHcc-----ccccCcceEEecCCCCCchhHHHHHHHH-----HHhc-----cc-CCCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYT-----KAQFNAMVLELNASDDRGIGIVRDQIFQ-----FAST-----KT-MHKSS 371 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~-~~~~~ 371 (533)
+++|+|++||||+++|+++.+.+.. ......+++.+++..... ..+...+.. |... .+ ...+.
T Consensus 244 pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~ 322 (538)
T PRK15424 244 AVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE-SLLEAELFGYEEGAFTGSRRGGRAGLFEIAH 322 (538)
T ss_pred cEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh-hhHHHHhcCCccccccCccccccCCchhccC
Confidence 5999999999999999999987220 111256889999887532 222222111 1000 01 11245
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCCC-------CCChhhhccceeeeecCCCHH
Q psy4285 372 YKLIILDEADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNYLS-------KIPPAIQSRCTRFRFGPLDSS 433 (533)
Q Consensus 372 ~~vliiDE~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~~-------~l~~~l~sR~~~i~~~~~~~~ 433 (533)
.+.|||||++.|+...|..|++.+++. +.++++|++||..- .+.+.+..|+..+.+.-||
T Consensus 323 gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPP-- 400 (538)
T PRK15424 323 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPP-- 400 (538)
T ss_pred CCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCC--
Confidence 689999999999999999999999863 23568999987542 3556777788777777777
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHhcCCCHHH--HHHHHHHHHHhcCCChhHHHHHHHHHHH
Q psy4285 434 LIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTD--ILTEISLLVHRLEIPESMLVDLVLKMSD 497 (533)
Q Consensus 434 ~~~~~l~~~~~~~~~ll~~~~~l~~l~~~~~~~~~d--i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (533)
|+..++|+..++..+-.-..-.....+++.- +.......+..++||++++ ++-+.+..
T Consensus 401 -----LReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvR-EL~nvier 460 (538)
T PRK15424 401 -----LRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVR-ELRNLMER 460 (538)
T ss_pred -----hhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHH-HHHHHHHH
Confidence 4444555555555421111000112344432 4456667889999999987 44444443
No 227
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.21 E-value=5e-11 Score=129.10 Aligned_cols=145 Identities=14% Similarity=0.176 Sum_probs=95.0
Q ss_pred chhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccc----cCcceEEecCCCC------Cc--hhHHHHH
Q psy4285 290 SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ----FNAMVLELNASDD------RG--IGIVRDQ 357 (533)
Q Consensus 290 ~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~----~~~~~~~~~~~~~------~~--~~~~~~~ 357 (533)
.+..+..+.+.+.....++++|+||||||||++|+.++..+..... .+..++.++.... .+ ...++..
T Consensus 191 R~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l 270 (758)
T PRK11034 191 REKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270 (758)
T ss_pred CCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHH
Confidence 3334444444455555667999999999999999999987633210 1223333332211 11 1223333
Q ss_pred HHHHHhcccCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHHHhcCCCcEEEEEeCCCC-----CCChhhhccce
Q psy4285 358 IFQFASTKTMHKSSYKLIILDEADAMT---------NDAQNALRRIIEKFTTNVRFCIICNYLS-----KIPPAIQSRCT 423 (533)
Q Consensus 358 ~~~~~~~~~~~~~~~~vliiDE~d~l~---------~~~~~~Ll~~le~~~~~~~~I~~~n~~~-----~l~~~l~sR~~ 423 (533)
+..+.. ..+.+|||||+|.+. .+..+.|...+.. ...++|.+|+..+ ..|+++.|||.
T Consensus 271 ~~~l~~------~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~E~~~~~~~D~AL~rRFq 342 (758)
T PRK11034 271 LKQLEQ------DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNIFEKDRALARRFQ 342 (758)
T ss_pred HHHHHh------cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChHHHHHHhhccHHHHhhCc
Confidence 332221 245699999999872 2334455556653 4588888888653 57999999999
Q ss_pred eeeecCCCHHHHHHHhhcC
Q psy4285 424 RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 424 ~i~~~~~~~~~~~~~l~~~ 442 (533)
.+.+.+|+.++...+|..+
T Consensus 343 ~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 343 KIDITEPSIEETVQIINGL 361 (758)
T ss_pred EEEeCCCCHHHHHHHHHHH
Confidence 9999999999999999965
No 228
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.20 E-value=3.3e-10 Score=119.40 Aligned_cols=168 Identities=14% Similarity=0.167 Sum_probs=113.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHH-HHHH----HHhc----c-cCCCCCcEEEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD-QIFQ----FAST----K-TMHKSSYKLIIL 377 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~----~-~~~~~~~~vlii 377 (533)
+++|+|++||||+++|+++....... +.+++.+++..... ..+.. +++. |... . ....+..++|||
T Consensus 212 pVlI~Ge~GtGK~~~A~~ih~~s~r~---~~p~v~v~c~~~~~-~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~l 287 (509)
T PRK05022 212 NVLILGETGVGKELVARAIHAASPRA---DKPLVYLNCAALPE-SLAESELFGHVKGAFTGAISNRSGKFELADGGTLFL 287 (509)
T ss_pred cEEEECCCCccHHHHHHHHHHhCCcC---CCCeEEEEcccCCh-HHHHHHhcCccccccCCCcccCCcchhhcCCCEEEe
Confidence 59999999999999999999875332 56888888876532 22221 1110 0000 0 011245689999
Q ss_pred eCCCCCCHHHHHHHHHHHHhcC-----------CCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHHHh
Q psy4285 378 DEADAMTNDAQNALRRIIEKFT-----------TNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 378 DE~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~~l 439 (533)
||++.|+.+.|..|++.+++.. .++++|++||.. ..+.+.|..|+..+.+.-|+ |
T Consensus 288 deI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPp-------L 360 (509)
T PRK05022 288 DEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPP-------L 360 (509)
T ss_pred cChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCC-------c
Confidence 9999999999999999997532 367999999754 35778888888777776666 4
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHH
Q psy4285 440 DYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488 (533)
Q Consensus 440 ~~~~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~ 488 (533)
+..++|+..+++.+-. +.....|.....+.......+..+.||++++
T Consensus 361 reR~eDI~~L~~~fl~--~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvr 407 (509)
T PRK05022 361 RERGDDVLLLAGYFLE--QNRARLGLRSLRLSPAAQAALLAYDWPGNVR 407 (509)
T ss_pred hhchhhHHHHHHHHHH--HHHHHcCCCCCCCCHHHHHHHHhCCCCCcHH
Confidence 4444455444443211 1212334344456677888899999999987
No 229
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.20 E-value=6.5e-10 Score=116.14 Aligned_cols=171 Identities=16% Similarity=0.194 Sum_probs=109.3
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHH-----HHh-----cccC-CCCCcEEE
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ-----FAS-----TKTM-HKSSYKLI 375 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~-~~~~~~vl 375 (533)
.+++|+|++||||+++|+++.+..... ..+++.+++..... ..+...+.. |.. ..+. ..+..+.|
T Consensus 236 ~pVLI~GE~GTGKe~lA~~IH~~S~r~---~~pfv~inC~~l~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTL 311 (526)
T TIGR02329 236 ATVLILGESGTGKELVAQAIHQLSGRR---DFPFVAINCGAIAE-SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTL 311 (526)
T ss_pred CcEEEECCCCcCHHHHHHHHHHhcCcC---CCCEEEeccccCCh-hHHHHHhcCCcccccccccccccccchhhcCCceE
Confidence 369999999999999999998764322 56889999876532 222221111 000 0111 12456899
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCCC-------CCChhhhccceeeeecCCCHHHHHH
Q psy4285 376 ILDEADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNYLS-------KIPPAIQSRCTRFRFGPLDSSLIMS 437 (533)
Q Consensus 376 iiDE~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~~-------~l~~~l~sR~~~i~~~~~~~~~~~~ 437 (533)
||||++.|+.+.|..|++.+++. +.++++|++|+... .+.+.|..|+..+.+.-||
T Consensus 312 fLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPP------ 385 (526)
T TIGR02329 312 FLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPP------ 385 (526)
T ss_pred EecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCC------
Confidence 99999999999999999999863 23468999987542 4556677788766776666
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHhcCCChhHH
Q psy4285 438 RLDYDDISFFNIIIWYIKIQEIKIEKGLALTDI--LTEISLLVHRLEIPESML 488 (533)
Q Consensus 438 ~l~~~~~~~~~ll~~~~~l~~l~~~~~~~~~di--~~~~~~~~~~~~~~~~~~ 488 (533)
|+..++|+..++..+-.-..-....++++..+ +..+.+.+..+.||++++
T Consensus 386 -LReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvr 437 (526)
T TIGR02329 386 -LRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVR 437 (526)
T ss_pred -chhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHH
Confidence 44444454444443211111001124555432 345667799999999987
No 230
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.20 E-value=1e-10 Score=119.97 Aligned_cols=128 Identities=16% Similarity=0.278 Sum_probs=88.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCc--hhHHHH-HHHHHHhcccCCCCCcEEEEEeCCCCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG--IGIVRD-QIFQFASTKTMHKSSYKLIILDEADAMT 384 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~vliiDE~d~l~ 384 (533)
+++||||||+||||+++++++.+... +..++.++..+... ...++. ....+... ....++|+|||++.+.
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~----~~~~dvLiIDDiq~l~ 215 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRES---GGKILYVRSELFTEHLVSAIRSGEMQRFRQF----YRNVDALFIEDIEVFS 215 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEeeHHHHHHHHHHHHhcchHHHHHHH----cccCCEEEEcchhhhc
Confidence 48999999999999999999998543 34455555432110 000110 01111111 1356799999999985
Q ss_pred H--HHHHHHHHHHHhc-CCCcEEEEEeCCC----CCCChhhhccc---eeeeecCCCHHHHHHHhhcC
Q psy4285 385 N--DAQNALRRIIEKF-TTNVRFCIICNYL----SKIPPAIQSRC---TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 385 ~--~~~~~Ll~~le~~-~~~~~~I~~~n~~----~~l~~~l~sR~---~~i~~~~~~~~~~~~~l~~~ 442 (533)
. ..+..|+.+++.. ..+..+|++||.+ ..++++++||| ..+.+.+|+.++...+|.+.
T Consensus 216 ~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 216 GKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 4 4577787777642 2456788888764 35789999999 58999999999999999875
No 231
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=6.3e-11 Score=121.89 Aligned_cols=132 Identities=13% Similarity=0.193 Sum_probs=85.8
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCch--hHHH-HHHHHHHhcccCCCCCcEEEEEeCCCCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI--GIVR-DQIFQFASTKTMHKSSYKLIILDEADAM 383 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~vliiDE~d~l 383 (533)
.+++||||||+||||+++++++++.... .+..++.+++.+.... ..++ +....+.... ....++|+|||++.+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~---~~~~dvLlIDDi~~l 206 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSEKFLNDLVDSMKEGKLNEFREKY---RKKVDVLLIDDVQFL 206 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHH---HhcCCEEEEechhhh
Confidence 3499999999999999999999875432 1344555554331100 0000 0011111110 124679999999987
Q ss_pred CH--HHHHHHHHHHHhcC-CCcEEEEEeCCCC----CCChhhhccce---eeeecCCCHHHHHHHhhcC
Q psy4285 384 TN--DAQNALRRIIEKFT-TNVRFCIICNYLS----KIPPAIQSRCT---RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 384 ~~--~~~~~Ll~~le~~~-~~~~~I~~~n~~~----~l~~~l~sR~~---~i~~~~~~~~~~~~~l~~~ 442 (533)
.. ..+..|+.+++... .+..+|++|+... .+.+.++|||. .+.+.+|+.+....++.+.
T Consensus 207 ~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 207 IGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred cCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH
Confidence 43 34567777776532 3356777776432 46788999995 8899999999999999876
No 232
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=7.9e-11 Score=122.70 Aligned_cols=129 Identities=14% Similarity=0.192 Sum_probs=88.7
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCch--hHHHH-HHHHHHhcccCCCCCcEEEEEeCCCCCCH
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI--GIVRD-QIFQFASTKTMHKSSYKLIILDEADAMTN 385 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~vliiDE~d~l~~ 385 (533)
++|||++|+|||||++++++.+.... .+..+++++..+.... ..++. ....|.... ...++|+|||++.+..
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~-~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y----~~~DLLlIDDIq~l~g 391 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLY-PGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY----REMDILLVDDIQFLED 391 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh----hcCCEEEEehhccccC
Confidence 89999999999999999999874321 1345555555432110 00110 111121111 2468999999999854
Q ss_pred --HHHHHHHHHHHhcCC-CcEEEEEeCCCC----CCChhhhccc---eeeeecCCCHHHHHHHhhcC
Q psy4285 386 --DAQNALRRIIEKFTT-NVRFCIICNYLS----KIPPAIQSRC---TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 386 --~~~~~Ll~~le~~~~-~~~~I~~~n~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~l~~~ 442 (533)
..+..|+.+++.... +..+|++||... .+++.|+||| ..+.+.+|+.+....+|...
T Consensus 392 ke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 392 KESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 346788888876433 466888888653 5789999999 47899999999999999876
No 233
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.19 E-value=3.6e-10 Score=119.11 Aligned_cols=168 Identities=18% Similarity=0.263 Sum_probs=112.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHh---------cccCC-CCCcEEEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS---------TKTMH-KSSYKLIIL 377 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~vlii 377 (533)
+++|+|++||||+++|+++....... ..+++.++++.... ..+...+..... ....+ .+..++|+|
T Consensus 229 pvlI~GE~GtGK~~lA~aiH~~s~r~---~~pfv~inca~~~~-~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~L 304 (520)
T PRK10820 229 PLLITGDTGTGKDLLAYACHLRSPRG---KKPFLALNCASIPD-DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLL 304 (520)
T ss_pred CEEEECCCCccHHHHHHHHHHhCCCC---CCCeEEeccccCCH-HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEE
Confidence 59999999999999999987654322 46788888877432 222221111000 00111 245689999
Q ss_pred eCCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHHHh
Q psy4285 378 DEADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 378 DE~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~~l 439 (533)
||++.|+...|..|++.+++. +.++++|++|+.. ..+.+.|..|+..+.+.-|+ |
T Consensus 305 deI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPp-------L 377 (520)
T PRK10820 305 DEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPP-------L 377 (520)
T ss_pred eChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCC-------c
Confidence 999999999999999999763 2356899988654 24677888998767776666 4
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHH
Q psy4285 440 DYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488 (533)
Q Consensus 440 ~~~~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~ 488 (533)
+..++|+..+++.+-. .+....|.+...+-......+..+.||++++
T Consensus 378 reR~~Di~~L~~~fl~--~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvr 424 (520)
T PRK10820 378 RDRPQDIMPLTELFVA--RFADEQGVPRPKLAADLNTVLTRYGWPGNVR 424 (520)
T ss_pred ccChhHHHHHHHHHHH--HHHHHcCCCCCCcCHHHHHHHhcCCCCCHHH
Confidence 4555555555553211 2223345444456677888899999999987
No 234
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.19 E-value=8.7e-10 Score=108.60 Aligned_cols=155 Identities=13% Similarity=0.134 Sum_probs=92.6
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHc-------cccc---cCc-------------------
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLY-------TKAQ---FNA------------------- 338 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~-------~~~~---~~~------------------- 338 (533)
.||+++...+.-.+-.....++++.|+||+||||++++++..+- ++.. ...
T Consensus 7 vgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 86 (337)
T TIGR02030 7 VGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSI 86 (337)
T ss_pred ccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhccccccc
Confidence 46777766654444444456899999999999999999998761 1110 000
Q ss_pred -----ceEEecC--C--CCCchhHHHHHHHH--HHhccc-CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc--------
Q psy4285 339 -----MVLELNA--S--DDRGIGIVRDQIFQ--FASTKT-MHKSSYKLIILDEADAMTNDAQNALRRIIEKF-------- 398 (533)
Q Consensus 339 -----~~~~~~~--~--~~~~~~~~~~~~~~--~~~~~~-~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~-------- 398 (533)
++..+.. + ...+.-.+...+.. +..... ...+..++|++||++.+++..|+.|++.|++.
T Consensus 87 ~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G 166 (337)
T TIGR02030 87 IKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREG 166 (337)
T ss_pred ccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECC
Confidence 0011000 0 01111112221110 100111 11245689999999999999999999999763
Q ss_pred -----CCCcEEEEEeCCCC-CCChhhhccce-eeeecCCCH-HHHHHHhhcC
Q psy4285 399 -----TTNVRFCIICNYLS-KIPPAIQSRCT-RFRFGPLDS-SLIMSRLDYD 442 (533)
Q Consensus 399 -----~~~~~~I~~~n~~~-~l~~~l~sR~~-~i~~~~~~~-~~~~~~l~~~ 442 (533)
+..+.+|.++|..+ .+.+++.+||. .+.+.++.+ ++..+++.+.
T Consensus 167 ~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 167 ISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERR 218 (337)
T ss_pred EEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhh
Confidence 22344455556544 68999999995 667777765 5666666653
No 235
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.18 E-value=1.2e-10 Score=121.11 Aligned_cols=130 Identities=17% Similarity=0.255 Sum_probs=87.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCch--hHHHH-HHHHHHhcccCCCCCcEEEEEeCCCCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI--GIVRD-QIFQFASTKTMHKSSYKLIILDEADAMT 384 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~vliiDE~d~l~ 384 (533)
.++|||||||||||+++++++++.... .+..++.+++.+.... ..++. ....+.... ...++|+|||++.+.
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~-~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~----~~~dlLiiDDi~~l~ 224 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKN-PNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY----RSVDVLLIDDIQFLA 224 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH----hcCCEEEEehhhhhc
Confidence 489999999999999999999985432 1344556655432110 00100 001111110 246799999999985
Q ss_pred H--HHHHHHHHHHHhcC-CCcEEEEEeCCCC----CCChhhhccc---eeeeecCCCHHHHHHHhhcC
Q psy4285 385 N--DAQNALRRIIEKFT-TNVRFCIICNYLS----KIPPAIQSRC---TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 385 ~--~~~~~Ll~~le~~~-~~~~~I~~~n~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~l~~~ 442 (533)
. ..+..|+.+++... .+..+|+++|.+. .+++.++||| ..+.+.+|+.++..+++...
T Consensus 225 ~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 225 GKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred CCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHH
Confidence 4 35667777776432 3345777777543 3778999999 47999999999999999887
No 236
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.18 E-value=3.3e-10 Score=123.98 Aligned_cols=168 Identities=18% Similarity=0.211 Sum_probs=109.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHH-HHH----HHh-----cccCCCCCcEEEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQ-IFQ----FAS-----TKTMHKSSYKLIIL 377 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~-----~~~~~~~~~~vlii 377 (533)
+++|+|++|||||++|+++....... +.+++.+++..... ..+... ++. +.. ......+..++|||
T Consensus 401 pVLI~GE~GTGK~~lA~~ih~~s~r~---~~~~v~i~c~~~~~-~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~L 476 (686)
T PRK15429 401 TVLILGETGTGKELIARAIHNLSGRN---NRRMVKMNCAAMPA-GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFL 476 (686)
T ss_pred CEEEECCCCcCHHHHHHHHHHhcCCC---CCCeEEEecccCCh-hHhhhhhcCcccccccccccchhhHHHhcCCCeEEE
Confidence 69999999999999999998865322 56788888765422 111111 110 000 00001234679999
Q ss_pred eCCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHHHh
Q psy4285 378 DEADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 378 DE~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~~l 439 (533)
||++.++.+.|..|++.+++. +.++++|++|+.. ..+.+.+..|+..+.+.-|| |
T Consensus 477 dei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPp-------L 549 (686)
T PRK15429 477 DEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPP-------L 549 (686)
T ss_pred echhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCC-------h
Confidence 999999999999999999763 2467899999754 24566677788777777677 4
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHH
Q psy4285 440 DYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488 (533)
Q Consensus 440 ~~~~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~ 488 (533)
+..++|+..+++.+- .++....|.....+-....+.+..+.||++++
T Consensus 550 reR~~Di~~L~~~~l--~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvr 596 (686)
T PRK15429 550 RERPEDIPLLVKAFT--FKIARRMGRNIDSIPAETLRTLSNMEWPGNVR 596 (686)
T ss_pred hhhHhHHHHHHHHHH--HHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHH
Confidence 444455555555321 11112234444445567788899999999987
No 237
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.17 E-value=1.4e-10 Score=115.17 Aligned_cols=130 Identities=18% Similarity=0.272 Sum_probs=89.9
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCch--hHHH-HHHHHHHhcccCCCCCcEEEEEeCCCCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI--GIVR-DQIFQFASTKTMHKSSYKLIILDEADAM 383 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~vliiDE~d~l 383 (533)
+.++||||+|.|||||++++++...... ....++.+.+.+.... ..++ +.+..|... . ..++++||+++.+
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~-~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~----y-~~dlllIDDiq~l 187 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANG-PNARVVYLTSEDFTNDFVKALRDNEMEKFKEK----Y-SLDLLLIDDIQFL 187 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhC-CCceEEeccHHHHHHHHHHHHHhhhHHHHHHh----h-ccCeeeechHhHh
Confidence 3499999999999999999999986553 2344555555442111 1111 112222211 1 4579999999998
Q ss_pred CH--HHHHHHHHHHHhcC-CCcEEEEEeCCCC----CCChhhhccc---eeeeecCCCHHHHHHHhhcC
Q psy4285 384 TN--DAQNALRRIIEKFT-TNVRFCIICNYLS----KIPPAIQSRC---TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 384 ~~--~~~~~Ll~~le~~~-~~~~~I~~~n~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~l~~~ 442 (533)
.. ..+..|+.+++... .+..+|+|++.+. .+.|.|+||| ..+.+.||+.+....+|...
T Consensus 188 ~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 188 AGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred cCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHH
Confidence 65 44778887776533 3347888886554 4679999998 48999999999999999985
No 238
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.16 E-value=3.9e-10 Score=103.61 Aligned_cols=141 Identities=17% Similarity=0.240 Sum_probs=99.4
Q ss_pred hhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCC
Q psy4285 291 MDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKS 370 (533)
Q Consensus 291 ~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (533)
+.+.+....++......|+|++|++|||||++++++..++... +..++++...+......+-+.+. .. .
T Consensus 37 ~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~---GLRlIev~k~~L~~l~~l~~~l~---~~-----~ 105 (249)
T PF05673_consen 37 EALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ---GLRLIEVSKEDLGDLPELLDLLR---DR-----P 105 (249)
T ss_pred HHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc---CceEEEECHHHhccHHHHHHHHh---cC-----C
Confidence 4455666777777666679999999999999999999988554 46677877766555444443333 22 2
Q ss_pred CcEEEEEeCCCCCCHHHHHH-HHHHHH----hcCCCcEEEEEeCCCCCCCh-----------------------hhhccc
Q psy4285 371 SYKLIILDEADAMTNDAQNA-LRRIIE----KFTTNVRFCIICNYLSKIPP-----------------------AIQSRC 422 (533)
Q Consensus 371 ~~~vliiDE~d~l~~~~~~~-Ll~~le----~~~~~~~~I~~~n~~~~l~~-----------------------~l~sR~ 422 (533)
..-|||+|+...=..+.... |..+|| ..|.|+.+..|+|+..-+.+ +|.+||
T Consensus 106 ~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRF 185 (249)
T PF05673_consen 106 YKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRF 185 (249)
T ss_pred CCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhC
Confidence 35699999987544444444 444444 56899999999986432211 556688
Q ss_pred -eeeeecCCCHHHHHHHhhcC
Q psy4285 423 -TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 423 -~~i~~~~~~~~~~~~~l~~~ 442 (533)
..+.|.+++.++..+++.+.
T Consensus 186 GL~l~F~~~~q~~YL~IV~~~ 206 (249)
T PF05673_consen 186 GLWLSFYPPDQEEYLAIVRHY 206 (249)
T ss_pred CcEEEecCCCHHHHHHHHHHH
Confidence 58999999999999888876
No 239
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.16 E-value=5e-10 Score=121.78 Aligned_cols=175 Identities=11% Similarity=0.090 Sum_probs=113.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhc-----c-cCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST-----K-TMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~vliiDE~d 381 (533)
+++|+|++||||+++|+++.+..... ..+++.+++........-.++++..... . ....+..++|||||++
T Consensus 350 pvli~Ge~GtGK~~~A~~ih~~s~r~---~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~ 426 (638)
T PRK11388 350 PVLLCGEEGVGKALLAQAIHNESERA---AGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVE 426 (638)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCcc---CCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChh
Confidence 59999999999999999999875332 4688889887653322222222211000 0 0112457899999999
Q ss_pred CCCHHHHHHHHHHHHhcC-----------CCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHHHhhcCH
Q psy4285 382 AMTNDAQNALRRIIEKFT-----------TNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDD 443 (533)
Q Consensus 382 ~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~ 443 (533)
.|+.+.|..|++.+++.. .++++|++|+.. ..+.+.|..|+..+.+.-|+ |+..+
T Consensus 427 ~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPp-------LreR~ 499 (638)
T PRK11388 427 YLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP-------LRMRR 499 (638)
T ss_pred hCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCC-------hhhhh
Confidence 999999999999998532 257899998753 35667777888777776666 33444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q psy4285 444 ISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMS 496 (533)
Q Consensus 444 ~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (533)
+|+..+++.+-. .+....+... .+.......+..+.||++++ ++.+.+.
T Consensus 500 ~Di~~L~~~~l~--~~~~~~~~~~-~~s~~a~~~L~~y~WPGNvr-eL~~~l~ 548 (638)
T PRK11388 500 EDIPALVNNKLR--SLEKRFSTRL-KIDDDALARLVSYRWPGNDF-ELRSVIE 548 (638)
T ss_pred hHHHHHHHHHHH--HHHHHhCCCC-CcCHHHHHHHHcCCCCChHH-HHHHHHH
Confidence 555555553211 1111223222 35677888899999999986 4444333
No 240
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.16 E-value=1.6e-10 Score=128.60 Aligned_cols=148 Identities=15% Similarity=0.162 Sum_probs=101.0
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccc----cCcceEEecCCCC------Cc--hhHHH
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ----FNAMVLELNASDD------RG--IGIVR 355 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~----~~~~~~~~~~~~~------~~--~~~~~ 355 (533)
.|+++.+..+...+.+...++++|+||||||||++++.+++.+..... .+..++.++.... .+ ...++
T Consensus 176 igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~ 255 (852)
T TIGR03346 176 IGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLK 255 (852)
T ss_pred CCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHH
Confidence 445555566666666666678999999999999999999998743211 1344555543221 11 12333
Q ss_pred HHHHHHHhcccCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHHhcCCCcEEEEEeCCC-----CCCChhhhccc
Q psy4285 356 DQIFQFASTKTMHKSSYKLIILDEADAMTN--------DAQNALRRIIEKFTTNVRFCIICNYL-----SKIPPAIQSRC 422 (533)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--------~~~~~Ll~~le~~~~~~~~I~~~n~~-----~~l~~~l~sR~ 422 (533)
..+...... ..+.||||||++.+.. +..+.|...++. ....+|.+|+.. ..+++++.|||
T Consensus 256 ~~l~~~~~~-----~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~IgaTt~~e~r~~~~~d~al~rRf 328 (852)
T TIGR03346 256 AVLNEVTKS-----EGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHCIGATTLDEYRKYIEKDAALERRF 328 (852)
T ss_pred HHHHHHHhc-----CCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEEEEeCcHHHHHHHhhcCHHHHhcC
Confidence 333333211 2468999999998852 345666666653 458888888765 35799999999
Q ss_pred eeeeecCCCHHHHHHHhhcC
Q psy4285 423 TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 423 ~~i~~~~~~~~~~~~~l~~~ 442 (533)
..+.+..|+.++...+|..+
T Consensus 329 ~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 329 QPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred CEEEeCCCCHHHHHHHHHHH
Confidence 99999999999999988865
No 241
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.16 E-value=3.5e-10 Score=116.54 Aligned_cols=130 Identities=15% Similarity=0.263 Sum_probs=89.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCch--hHHH---HHHHHHHhcccCCCCCcEEEEEeCCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI--GIVR---DQIFQFASTKTMHKSSYKLIILDEADA 382 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~vliiDE~d~ 382 (533)
.++|||++|+||||+++++++.+.... .+..++.+++.+.... ..+. +.+..+.... ...++|+|||++.
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~-~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~----~~~dvLiIDDiq~ 217 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNF-SDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI----CQNDVLIIDDVQF 217 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh----ccCCEEEEecccc
Confidence 489999999999999999999875321 1345555655432110 0111 1111121111 3467999999999
Q ss_pred CC--HHHHHHHHHHHHhc-CCCcEEEEEeCCCC----CCChhhhccce---eeeecCCCHHHHHHHhhcC
Q psy4285 383 MT--NDAQNALRRIIEKF-TTNVRFCIICNYLS----KIPPAIQSRCT---RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 383 l~--~~~~~~Ll~~le~~-~~~~~~I~~~n~~~----~l~~~l~sR~~---~i~~~~~~~~~~~~~l~~~ 442 (533)
+. ...++.|+.+++.. ..+..+|+++|.+. .+++.|+|||. .+.+.+|+.++...+|.+.
T Consensus 218 l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 218 LSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 86 56678888888753 23346888887653 46889999984 8899999999999999765
No 242
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=1.1e-10 Score=108.88 Aligned_cols=73 Identities=19% Similarity=0.197 Sum_probs=61.8
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCC----------CHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCC
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPL----------DSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDG 70 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g 70 (533)
+||||++++|||+|+.+++|+|||+||||.+.|+++ ++.++...|.. .. .+++ .++..++|
T Consensus 112 LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~i~~~L~~---~~--~~d~----~i~~~a~g 182 (261)
T PRK05818 112 IEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDRYFQYILLS---FY--SVDE----QLQAYNNG 182 (261)
T ss_pred hcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccChHHHHHHHHH---cc--CccH----HHHHHcCC
Confidence 699999999999999999999999999999999998 66666666642 22 2333 78889999
Q ss_pred CHHHHHHHHHHH
Q psy4285 71 DMRKVLNILQSA 82 (533)
Q Consensus 71 ~~r~a~~~l~~~ 82 (533)
|..+|+.+++.+
T Consensus 183 ~~~~a~~l~~~l 194 (261)
T PRK05818 183 SFSKLKNIIETL 194 (261)
T ss_pred CHHHHHHHHHHH
Confidence 999999999965
No 243
>PRK06620 hypothetical protein; Validated
Probab=99.14 E-value=6.1e-10 Score=103.27 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=68.9
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHH
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 386 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~ 386 (533)
+.++||||||+||||+++++++.. +..+ +..... .. .+. ...++|+|||++.+...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~------~~~~--~~~~~~-----~~----~~~-------~~~d~lliDdi~~~~~~ 100 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS------NAYI--IKDIFF-----NE----EIL-------EKYNAFIIEDIENWQEP 100 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc------CCEE--cchhhh-----ch----hHH-------hcCCEEEEeccccchHH
Confidence 349999999999999999988764 2211 111100 00 111 13469999999976432
Q ss_pred HHHHHHHHHHhc-CCCcEEEEEeCCCC---CCChhhhccce---eeeecCCCHHHHHHHhhcC
Q psy4285 387 AQNALRRIIEKF-TTNVRFCIICNYLS---KIPPAIQSRCT---RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 387 ~~~~Ll~~le~~-~~~~~~I~~~n~~~---~l~~~l~sR~~---~i~~~~~~~~~~~~~l~~~ 442 (533)
.|+.+++.. ..+..++++++.+. .+ |+++||+. .+.+.+|+.+++..++.+.
T Consensus 101 ---~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~ 159 (214)
T PRK06620 101 ---ALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKH 159 (214)
T ss_pred ---HHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHH
Confidence 344443321 12345666664332 35 89999996 8999999999887777654
No 244
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.14 E-value=1.6e-10 Score=118.61 Aligned_cols=129 Identities=17% Similarity=0.271 Sum_probs=87.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHH----HHHHHHhcccCCCCCcEEEEEeCCCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD----QIFQFASTKTMHKSSYKLIILDEADAM 383 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~vliiDE~d~l 383 (533)
.++||||||+|||++++++++++.... .+..++.+++.+... ..... ....+.... ...++|+|||++.+
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~dlLiiDDi~~l 211 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVSSEKFTN-DFVNALRNNKMEEFKEKY----RSVDLLLIDDIQFL 211 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEEHHHHHH-HHHHHHHcCCHHHHHHHH----HhCCEEEEehhhhh
Confidence 489999999999999999999985432 134556665543211 00000 011111110 23579999999998
Q ss_pred CH--HHHHHHHHHHHhc-CCCcEEEEEeCCCC----CCChhhhccce---eeeecCCCHHHHHHHhhcC
Q psy4285 384 TN--DAQNALRRIIEKF-TTNVRFCIICNYLS----KIPPAIQSRCT---RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 384 ~~--~~~~~Ll~~le~~-~~~~~~I~~~n~~~----~l~~~l~sR~~---~i~~~~~~~~~~~~~l~~~ 442 (533)
.. ..+..|+.+++.. ..+..+|+++|... .+++.++|||. .+.+.+|+.++...++...
T Consensus 212 ~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 212 AGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 54 3567788877653 23456888887532 47789999994 6999999999999999887
No 245
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.14 E-value=5.5e-10 Score=110.90 Aligned_cols=177 Identities=16% Similarity=0.149 Sum_probs=121.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHH----H----HhcccCC-CCCcEEEEEe
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ----F----ASTKTMH-KSSYKLIILD 378 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~-~~~~~vliiD 378 (533)
.+|+.|.+||||..+|++|.+..... ..+++.+|++..-..-.-.++++. | ......+ -+.++.||+|
T Consensus 248 tVLi~GETGtGKElvAraIH~~S~R~---~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLD 324 (550)
T COG3604 248 TVLIRGETGTGKELVARAIHQLSPRR---DKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLD 324 (550)
T ss_pred eEEEecCCCccHHHHHHHHHhhCccc---CCCceeeeccccchHHHHHHHhcccccccccchhccCcceeecCCCeEech
Confidence 49999999999999999999865443 678899998764221111111111 1 1111111 2467899999
Q ss_pred CCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHHHhh
Q psy4285 379 EADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440 (533)
Q Consensus 379 E~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~~l~ 440 (533)
||.-|+...|..|++.+.+. .-++++|++||.- .++-..|..|..++.+.-|| |+
T Consensus 325 EIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPP-------LR 397 (550)
T COG3604 325 EIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPP-------LR 397 (550)
T ss_pred hhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHHcCcchhhhhhcccccccCCCC-------cc
Confidence 99999999999999999863 3468999999964 35666777788888887777 55
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q psy4285 441 YDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSD 497 (533)
Q Consensus 441 ~~~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (533)
+.++|+--+... -+.++....|...-.+-.+..+.+..+.||++++ ++-+.+..
T Consensus 398 ER~~DIplLA~~--Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVR-ELen~veR 451 (550)
T COG3604 398 ERPEDIPLLAGY--FLEKFRRRLGRAILSLSAEALELLSSYEWPGNVR-ELENVVER 451 (550)
T ss_pred cCCccHHHHHHH--HHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHH-HHHHHHHH
Confidence 555554444432 1123335557766677778889999999999998 44444443
No 246
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.14 E-value=1.1e-09 Score=121.78 Aligned_cols=146 Identities=15% Similarity=0.206 Sum_probs=102.1
Q ss_pred hchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccc----cCcceEEecCCCC------Cc--hhHHHH
Q psy4285 289 ESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ----FNAMVLELNASDD------RG--IGIVRD 356 (533)
Q Consensus 289 ~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~----~~~~~~~~~~~~~------~~--~~~~~~ 356 (533)
|.+..++.+...+.....+|++|+||||||||++|+.+|..+..... .+..++.++.+.. ++ ...++.
T Consensus 183 gr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~ 262 (821)
T CHL00095 183 GREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKR 262 (821)
T ss_pred CcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHH
Confidence 44555556666666667778999999999999999999998743211 2345666665321 22 123334
Q ss_pred HHHHHHhcccCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHHhcCCCcEEEEEeCCCC-----CCChhhhccce
Q psy4285 357 QIFQFASTKTMHKSSYKLIILDEADAMTN--------DAQNALRRIIEKFTTNVRFCIICNYLS-----KIPPAIQSRCT 423 (533)
Q Consensus 357 ~~~~~~~~~~~~~~~~~vliiDE~d~l~~--------~~~~~Ll~~le~~~~~~~~I~~~n~~~-----~l~~~l~sR~~ 423 (533)
.+..... .++.||||||+|.+.. +..+.|...+.. ..+++|.+|+... ..++++.+||.
T Consensus 263 i~~~~~~------~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ey~~~ie~D~aL~rRf~ 334 (821)
T CHL00095 263 IFDEIQE------NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDEYRKHIEKDPALERRFQ 334 (821)
T ss_pred HHHHHHh------cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHHHHHHHhcCHHHHhcce
Confidence 4333321 2457999999997743 345666666764 4588899887653 57999999999
Q ss_pred eeeecCCCHHHHHHHhhcC
Q psy4285 424 RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 424 ~i~~~~~~~~~~~~~l~~~ 442 (533)
.+.+..|+.++...+++.+
T Consensus 335 ~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 335 PVYVGEPSVEETIEILFGL 353 (821)
T ss_pred EEecCCCCHHHHHHHHHHH
Confidence 9999999999988888766
No 247
>PRK09087 hypothetical protein; Validated
Probab=99.13 E-value=4.7e-10 Score=104.92 Aligned_cols=126 Identities=17% Similarity=0.244 Sum_probs=83.1
Q ss_pred hhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCc
Q psy4285 293 LCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSY 372 (533)
Q Consensus 293 ~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (533)
+...+..+... ..+.++|+||+|+||||+++++++.. +..+ ++... ...+.+. .. ..
T Consensus 32 a~~~l~~~~~~-~~~~l~l~G~~GsGKThLl~~~~~~~------~~~~--i~~~~-~~~~~~~----~~---------~~ 88 (226)
T PRK09087 32 AVSLVDHWPNW-PSPVVVLAGPVGSGKTHLASIWREKS------DALL--IHPNE-IGSDAAN----AA---------AE 88 (226)
T ss_pred HHHHHHhcccC-CCCeEEEECCCCCCHHHHHHHHHHhc------CCEE--ecHHH-cchHHHH----hh---------hc
Confidence 44444443322 22449999999999999999998764 2222 22211 1111111 00 12
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcC-CCcEEEEEeCCCC----CCChhhhccc---eeeeecCCCHHHHHHHhhcC
Q psy4285 373 KLIILDEADAMTNDAQNALRRIIEKFT-TNVRFCIICNYLS----KIPPAIQSRC---TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 373 ~vliiDE~d~l~~~~~~~Ll~~le~~~-~~~~~I~~~n~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~l~~~ 442 (533)
++|+|||++.+.. .+.+|+.+++... .+..+|++++.+. ...+.++||| ..+.+.+|+.++...++.+.
T Consensus 89 ~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 4899999998743 3566888776533 3567888886433 3579999999 79999999999999998876
No 248
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=9.5e-11 Score=118.05 Aligned_cols=76 Identities=14% Similarity=0.282 Sum_probs=68.4
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++++||++|++++.++|||+|||++++|++|+.+++.++|.+ +. .++++.+..++..|+|++++|+.+++
T Consensus 141 LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~~--~~~~~~a~~la~~s~G~~~~A~~l~~ 215 (394)
T PRK07940 141 VEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVR---RD--GVDPETARRAARASQGHIGRARRLAT 215 (394)
T ss_pred hhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHH---hc--CCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 69999999999999999999999999999999999999999999972 22 35688888999999999999998875
Q ss_pred H
Q psy4285 81 S 81 (533)
Q Consensus 81 ~ 81 (533)
.
T Consensus 216 ~ 216 (394)
T PRK07940 216 D 216 (394)
T ss_pred C
Confidence 3
No 249
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.13 E-value=8.5e-11 Score=104.41 Aligned_cols=117 Identities=18% Similarity=0.173 Sum_probs=76.1
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHh----c-----ccCCCCCcEEEEE
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS----T-----KTMHKSSYKLIIL 377 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~vlii 377 (533)
.+++++|++||||+.+|++|.+..... ..+++.++++.......-.++++.... . .....+..++|+|
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~---~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRK---NGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTT---TS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcc---cCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccceEEee
Confidence 469999999999999999999854322 568999999875333222222211000 0 0001246789999
Q ss_pred eCCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCC-------CCCChhhhccceeee
Q psy4285 378 DEADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNYL-------SKIPPAIQSRCTRFR 426 (533)
Q Consensus 378 DE~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~-------~~l~~~l~sR~~~i~ 426 (533)
||++.|+...|..|++.|++. +.++++|++|+.. ..+.+.|..|+..+.
T Consensus 100 d~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~~g~fr~dLy~rL~~~~ 166 (168)
T PF00158_consen 100 DEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVEQGRFREDLYYRLNVFT 166 (168)
T ss_dssp ETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTTEE
T ss_pred cchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHHcCCChHHHHHHhceEe
Confidence 999999999999999999853 3479999999854 356666666665443
No 250
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=1.1e-10 Score=114.95 Aligned_cols=72 Identities=18% Similarity=0.315 Sum_probs=62.9
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++|+|||+|+.+++++|||+|||+.++|++|+.+++.+||.. .+ +++ .+.++..++|++.+|+.+++
T Consensus 156 LEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~----~~--~~~--~~~~l~~~~Gsp~~Al~~~~ 227 (342)
T PRK06964 156 LEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAA----QG--VAD--ADALLAEAGGAPLAALALAS 227 (342)
T ss_pred hcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHH----cC--CCh--HHHHHHHcCCCHHHHHHHHC
Confidence 69999999999999999999999999999999999999999999974 23 333 23467889999999998873
No 251
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=1.6e-10 Score=114.45 Aligned_cols=76 Identities=28% Similarity=0.472 Sum_probs=67.9
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++|+|||+|+.+++++|||+|||++++|++++.+++..||++... .++++.+..++.+++|++.+|...+.
T Consensus 117 LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~ 192 (313)
T PRK05564 117 IEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIE 192 (313)
T ss_pred hcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 69999999999999999999999999999999999999999999975431 45678888999999999999987654
No 252
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.10 E-value=1.2e-09 Score=108.20 Aligned_cols=72 Identities=24% Similarity=0.286 Sum_probs=57.9
Q ss_pred CcEEEEEeCCCCCCH------------HHHHHHHHHHHhc----------CCCcEEEEEeC----CCCCCChhhhccc-e
Q psy4285 371 SYKLIILDEADAMTN------------DAQNALRRIIEKF----------TTNVRFCIICN----YLSKIPPAIQSRC-T 423 (533)
Q Consensus 371 ~~~vliiDE~d~l~~------------~~~~~Ll~~le~~----------~~~~~~I~~~n----~~~~l~~~l~sR~-~ 423 (533)
..+|+||||+|++.. ..|++||+++|.. ..++.||+.+- .++.+.|.+..|| .
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 326 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPI 326 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 467999999999853 3688999999852 24566776663 4567999999999 5
Q ss_pred eeeecCCCHHHHHHHhhcC
Q psy4285 424 RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 424 ~i~~~~~~~~~~~~~l~~~ 442 (533)
.+.+.+++.+++..+|..-
T Consensus 327 ~v~L~~L~~edL~rILteP 345 (441)
T TIGR00390 327 RVELQALTTDDFERILTEP 345 (441)
T ss_pred EEECCCCCHHHHHHHhcCC
Confidence 8899999999999999776
No 253
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=99.10 E-value=2.1e-09 Score=117.03 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=65.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHH-------HHHHHhccc--------CCCCCc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQ-------IFQFASTKT--------MHKSSY 372 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~--------~~~~~~ 372 (533)
.++++|+|||||||+++++.+.+.... +...+.+.+++++....+.+. +..+..... ......
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~--~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~ 417 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELG--GLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDC 417 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC--CCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccC
Confidence 589999999999999999988764321 112344455554444444332 111111100 001357
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCC
Q psy4285 373 KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411 (533)
Q Consensus 373 ~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~ 411 (533)
++|||||++|++......|++.+ +.++++|++++..
T Consensus 418 ~llIvDEaSMvd~~~~~~Ll~~~---~~~~rlilvGD~~ 453 (720)
T TIGR01448 418 DLLIVDESSMMDTWLALSLLAAL---PDHARLLLVGDTD 453 (720)
T ss_pred CEEEEeccccCCHHHHHHHHHhC---CCCCEEEEECccc
Confidence 89999999999999888888876 5678999999643
No 254
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.10 E-value=1.2e-09 Score=108.44 Aligned_cols=72 Identities=21% Similarity=0.289 Sum_probs=57.4
Q ss_pred CcEEEEEeCCCCCCH------------HHHHHHHHHHHhc----------CCCcEEEEEe----CCCCCCChhhhccc-e
Q psy4285 371 SYKLIILDEADAMTN------------DAQNALRRIIEKF----------TTNVRFCIIC----NYLSKIPPAIQSRC-T 423 (533)
Q Consensus 371 ~~~vliiDE~d~l~~------------~~~~~Ll~~le~~----------~~~~~~I~~~----n~~~~l~~~l~sR~-~ 423 (533)
..+|+||||+|++.. ..|.+||+++|.. ..++.||+.+ ..++.+.|.+..|| .
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 467999999999853 3688999999852 2456666665 34567899999999 5
Q ss_pred eeeecCCCHHHHHHHhhcC
Q psy4285 424 RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 424 ~i~~~~~~~~~~~~~l~~~ 442 (533)
.+.+.+++.+++..+|..-
T Consensus 329 ~v~L~~L~~~dL~~ILteP 347 (443)
T PRK05201 329 RVELDALTEEDFVRILTEP 347 (443)
T ss_pred EEECCCCCHHHHHHHhcCC
Confidence 8889999999999999875
No 255
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1e-08 Score=96.13 Aligned_cols=125 Identities=22% Similarity=0.268 Sum_probs=86.5
Q ss_pred cccccCCCCHHHHHHHHHHHhhhchhhhhhhccccccc---------------CCCceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 267 VYNSVGYPTKTEITNILRWLLNESMDLCYKINRFIDEN---------------ELPHLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~---------------~~~~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.......|.+..+..+++....||+...+.|.-++.++ ...|+|+.||+|+|||.+|+.+|+.+
T Consensus 43 ~~~~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L- 121 (408)
T COG1219 43 EKELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL- 121 (408)
T ss_pred chhhccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh-
Confidence 34455779999999999988888887766553332211 12569999999999999999999998
Q ss_pred cccccCcceEEecCCCCCchh----HHHHHHHHHHhcccC--CCCCcEEEEEeCCCCCCH--------------HHHHHH
Q psy4285 332 TKAQFNAMVLELNASDDRGIG----IVRDQIFQFASTKTM--HKSSYKLIILDEADAMTN--------------DAQNAL 391 (533)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~vliiDE~d~l~~--------------~~~~~L 391 (533)
+.+|--.++.+..... .+.+.+..+.+.... ..+..++++|||+|++.. ..|.+|
T Consensus 122 -----nVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQAL 196 (408)
T COG1219 122 -----NVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQAL 196 (408)
T ss_pred -----CCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHH
Confidence 6666666665544332 233333333332211 124578999999999853 468999
Q ss_pred HHHHHh
Q psy4285 392 RRIIEK 397 (533)
Q Consensus 392 l~~le~ 397 (533)
++++|.
T Consensus 197 LKiiEG 202 (408)
T COG1219 197 LKIIEG 202 (408)
T ss_pred HHHHcC
Confidence 999984
No 256
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=2.1e-10 Score=109.99 Aligned_cols=72 Identities=19% Similarity=0.325 Sum_probs=59.0
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
+||||++++|||+|++++.|+|||+|||+.++|++ +++++.++|. ++++. .+....++.. .|++.+|+.+++
T Consensus 128 LEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~----~~g~~--~~~a~~la~~-~~s~~~A~~l~~ 199 (290)
T PRK07276 128 IEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE----QKGLL--KTQAELLAKL-AQSTSEAEKLAQ 199 (290)
T ss_pred hcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH----HcCCC--hHHHHHHHHH-CCCHHHHHHHhC
Confidence 69999999999999999999999999999999977 7888888886 45543 4444445555 468999998874
No 257
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=2.2e-10 Score=113.69 Aligned_cols=74 Identities=20% Similarity=0.385 Sum_probs=63.6
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++++|||+|+.+++|+|||+|||++++|++++.+++.++|+ +++ ++++....++.. .|++++|+.+++
T Consensus 134 LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~----~~g--i~~~~~~~l~~~-~g~~~~A~~l~~ 206 (329)
T PRK08058 134 LEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQ----EEG--ISESLATLLAGL-TNSVEEALALSE 206 (329)
T ss_pred hcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHH----HcC--CChHHHHHHHHH-cCCHHHHHHHhc
Confidence 7999999999999999999999999999999999999999999996 355 445555566666 489999998876
Q ss_pred H
Q psy4285 81 S 81 (533)
Q Consensus 81 ~ 81 (533)
.
T Consensus 207 ~ 207 (329)
T PRK08058 207 D 207 (329)
T ss_pred C
Confidence 4
No 258
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=3.1e-10 Score=109.89 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=63.6
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++|+|||+|+.+.+++|||+|||++++|++++++++.++|.. .+ ++++....++..++| +.+|+.+++
T Consensus 114 LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~----~~--~~~~~a~~~a~~~~~-~~~a~~~~~ 186 (299)
T PRK07132 114 IEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS----KN--KEKEYNWFYAYIFSN-FEQAEKYIN 186 (299)
T ss_pred hhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH----cC--CChhHHHHHHHHcCC-HHHHHHHHh
Confidence 69999999999999999999999999999999999999999999973 23 566667777777774 999998854
No 259
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.07 E-value=6e-10 Score=107.64 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=53.6
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCC------------CCCCChhhhccceeeeecCCCHHHHHHHh
Q psy4285 372 YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY------------LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 372 ~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~------------~~~l~~~l~sR~~~i~~~~~~~~~~~~~l 439 (533)
++||||||+++|+-+....|.+++|.. -...+|++||+ +.-++..+++||..+...|++.+++++++
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~-~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il 357 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESE-LSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQIL 357 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTST-T--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHH
T ss_pred cceEEecchhhccHHHHHHHHHHhcCC-CCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHH
Confidence 789999999999999999999999864 34678888884 34688899999999999999999999998
Q ss_pred hcC
Q psy4285 440 DYD 442 (533)
Q Consensus 440 ~~~ 442 (533)
.-.
T Consensus 358 ~iR 360 (398)
T PF06068_consen 358 KIR 360 (398)
T ss_dssp HHH
T ss_pred Hhh
Confidence 776
No 260
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=99.07 E-value=8.4e-11 Score=105.68 Aligned_cols=100 Identities=31% Similarity=0.401 Sum_probs=62.2
Q ss_pred ccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC-------CchhHHHHHHHHHHhcccCCCCC
Q psy4285 299 RFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD-------RGIGIVRDQIFQFASTKTMHKSS 371 (533)
Q Consensus 299 ~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 371 (533)
.|++.+ .+++|+||||||||++|.++++++... +..+..++.++. .......+.++.+. .
T Consensus 42 ~~~~~~--~~l~l~G~~G~GKThLa~ai~~~~~~~---g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--------~ 108 (178)
T PF01695_consen 42 EFIENG--ENLILYGPPGTGKTHLAVAIANEAIRK---GYSVLFITASDLLDELKQSRSDGSYEELLKRLK--------R 108 (178)
T ss_dssp -S-SC----EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--------T
T ss_pred CCcccC--eEEEEEhhHhHHHHHHHHHHHHHhccC---CcceeEeecCceeccccccccccchhhhcCccc--------c
Confidence 344433 379999999999999999999988653 334444433211 01111222233332 4
Q ss_pred cEEEEEeCCCCC--CHHHHHHHHHHHHhcCCCcEEEEEeCCC
Q psy4285 372 YKLIILDEADAM--TNDAQNALRRIIEKFTTNVRFCIICNYL 411 (533)
Q Consensus 372 ~~vliiDE~d~l--~~~~~~~Ll~~le~~~~~~~~I~~~n~~ 411 (533)
.++|||||+... +.+..+.|+++++....+...|+|||..
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred ccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 579999999876 4566777999998765566789999865
No 261
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=3.9e-10 Score=112.74 Aligned_cols=77 Identities=21% Similarity=0.460 Sum_probs=68.0
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
+||||++++||++|+.++.++|||+|||+.++|++++.+++.++|.+. ....+++.+..++..|+||+++|+++++
T Consensus 165 LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~----~~~~~~~~~~~l~~~s~Gsp~~Al~ll~ 240 (365)
T PRK07471 165 LEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA----GPDLPDDPRAALAALAEGSVGRALRLAG 240 (365)
T ss_pred HhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----cccCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 599999999999999999999999999999999999999999999853 2334455567899999999999999986
Q ss_pred H
Q psy4285 81 S 81 (533)
Q Consensus 81 ~ 81 (533)
.
T Consensus 241 ~ 241 (365)
T PRK07471 241 G 241 (365)
T ss_pred c
Confidence 4
No 262
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.05 E-value=2.3e-09 Score=101.85 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=62.1
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCC------------CCCCChhhhccceeeeecCCCHHHHHHHh
Q psy4285 372 YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY------------LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 372 ~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~------------~~~l~~~l~sR~~~i~~~~~~~~~~~~~l 439 (533)
+.||||||+++|+-+....|.+.||..- ...+|++||+ |.-++..+++|...+.-.|++.+++++++
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~-aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi 370 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESEL-APIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII 370 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhccc-CcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHH
Confidence 7899999999999999999999998643 3567888874 45789999999999999999999999999
Q ss_pred hcC
Q psy4285 440 DYD 442 (533)
Q Consensus 440 ~~~ 442 (533)
...
T Consensus 371 ~iR 373 (450)
T COG1224 371 RIR 373 (450)
T ss_pred HHh
Confidence 887
No 263
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.03 E-value=4e-09 Score=110.17 Aligned_cols=168 Identities=15% Similarity=0.160 Sum_probs=111.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHH-----h----cc-cCCCCCcEEEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA-----S----TK-TMHKSSYKLIIL 377 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~-~~~~~~~~vlii 377 (533)
+++++|++||||+++|+++....... ..+++.+++..... ..+...+.... . .. ....+.+++|+|
T Consensus 164 ~vli~Ge~GtGK~~lA~~ih~~s~~~---~~~~v~v~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l 239 (445)
T TIGR02915 164 TVLLLGESGTGKEVLARALHQLSDRK---DKRFVAINCAAIPE-NLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFL 239 (445)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCcC---CCCeEEEECCCCCh-HHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEE
Confidence 58999999999999999998765322 45678888876432 22222211100 0 00 011245789999
Q ss_pred eCCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHHHh
Q psy4285 378 DEADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 378 DE~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~~l 439 (533)
||++.|+...|..|++.+++. +.++++|++|+.. ..+.+.|..|+..+.+.-|+ |
T Consensus 240 ~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPp-------L 312 (445)
T TIGR02915 240 DEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPP-------L 312 (445)
T ss_pred echhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCC-------c
Confidence 999999999999999999853 1367899999765 35677788888777776666 4
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHH
Q psy4285 440 DYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488 (533)
Q Consensus 440 ~~~~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~ 488 (533)
+..++|+..+++.+ +.++....+.....+.......+..+.||++++
T Consensus 313 r~R~~Di~~l~~~~--l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvr 359 (445)
T TIGR02915 313 RSRDGDAVLLANAF--LERFARELKRKTKGFTDDALRALEAHAWPGNVR 359 (445)
T ss_pred hhchhhHHHHHHHH--HHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHH
Confidence 44445555555432 112212224343446677888899999999987
No 264
>PRK12377 putative replication protein; Provisional
Probab=99.03 E-value=3.4e-10 Score=106.63 Aligned_cols=107 Identities=23% Similarity=0.341 Sum_probs=70.9
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHH------HHHHhcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI------FQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~vliiDE~ 380 (533)
.+++|+||||||||++|.++++.+... +..+..++.++... .++... ..+... -...++|||||+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~---g~~v~~i~~~~l~~--~l~~~~~~~~~~~~~l~~----l~~~dLLiIDDl 172 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK---GRSVIVVTVPDVMS--RLHESYDNGQSGEKFLQE----LCKVDLLVLDEI 172 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEEEHHHHHH--HHHHHHhccchHHHHHHH----hcCCCEEEEcCC
Confidence 469999999999999999999998643 33444444332111 111100 001000 135789999999
Q ss_pred C--CCCHHHHHHHHHHHHhcCC-CcEEEEEeCCCC-----CCChhhhccc
Q psy4285 381 D--AMTNDAQNALRRIIEKFTT-NVRFCIICNYLS-----KIPPAIQSRC 422 (533)
Q Consensus 381 d--~l~~~~~~~Ll~~le~~~~-~~~~I~~~n~~~-----~l~~~l~sR~ 422 (533)
+ ..+.+.+..|+.+++.... ...+|+|||... .+.+.+.||+
T Consensus 173 g~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~~~ri~dRl 222 (248)
T PRK12377 173 GIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLGERVMDRM 222 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHhhHHHHHHH
Confidence 4 4577888999999997654 467899999653 3566777776
No 265
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.03 E-value=3.5e-10 Score=103.40 Aligned_cols=69 Identities=23% Similarity=0.418 Sum_probs=64.3
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKV 75 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a 75 (533)
||+||+++.|||+|+.+.++.++|+|||+++.|++++.+++.+||.+. + +++++++.++..++||+|+|
T Consensus 120 le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 120 LEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred hcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 699999999999999999999999999999999999999999999853 4 67899999999999999986
No 266
>KOG0741|consensus
Probab=99.03 E-value=1.1e-08 Score=101.74 Aligned_cols=123 Identities=16% Similarity=0.214 Sum_probs=70.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCC-CCCchh------HHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNAS-DDRGIG------IVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
.+||.||||+|||++|-.+|... .-+++.+..+ +..+.. .+.+.+... +.+.-.++++|++
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S------~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DA------YkS~lsiivvDdi 607 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSS------DFPFVKIISPEDMIGLSESAKCAHIKKIFEDA------YKSPLSIIVVDDI 607 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhc------CCCeEEEeChHHccCccHHHHHHHHHHHHHHh------hcCcceEEEEcch
Confidence 38999999999999999999865 5566555443 222221 222222222 2345679999999
Q ss_pred CCCC------HHHHHHHHHH----HHhc-CCC-cEEEEEeCCCCCCC--hhhhccc-eeeeecCCCH-HHHHHHhhcC
Q psy4285 381 DAMT------NDAQNALRRI----IEKF-TTN-VRFCIICNYLSKIP--PAIQSRC-TRFRFGPLDS-SLIMSRLDYD 442 (533)
Q Consensus 381 d~l~------~~~~~~Ll~~----le~~-~~~-~~~I~~~n~~~~l~--~~l~sR~-~~i~~~~~~~-~~~~~~l~~~ 442 (533)
+++- +...|.++++ +.+. |.+ -.+|++|.....+. -.+.+-| ..+..+.++. +++.+++...
T Consensus 608 ErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 608 ERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL 685 (744)
T ss_pred hhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc
Confidence 8873 3444555544 4443 332 33455443322111 1222333 3667777666 6777777766
No 267
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.03 E-value=3.2e-09 Score=111.67 Aligned_cols=168 Identities=18% Similarity=0.187 Sum_probs=112.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHH-HHHH----h-----cccCCCCCcEEEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI-FQFA----S-----TKTMHKSSYKLIIL 377 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~-----~~~~~~~~~~vlii 377 (533)
.++++|++|||||++|++++...... ..+++.+++..... ..+...+ +... . ......+..+.|||
T Consensus 163 ~vli~Ge~GtGK~~lA~~ih~~s~~~---~~~~i~i~c~~~~~-~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l 238 (469)
T PRK10923 163 SVLINGESGTGKELVAHALHRHSPRA---KAPFIALNMAAIPK-DLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL 238 (469)
T ss_pred eEEEEeCCCCcHHHHHHHHHhcCCCC---CCCeEeeeCCCCCH-HHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEE
Confidence 49999999999999999998865332 56788888876522 2222221 1100 0 00011234679999
Q ss_pred eCCCCCCHHHHHHHHHHHHhcC-----------CCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHHHh
Q psy4285 378 DEADAMTNDAQNALRRIIEKFT-----------TNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 378 DE~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~~l 439 (533)
||++.++.+.|..|++.+++.. .++++|++|+.. ..+.+.|..|+..+.+.-|+ |
T Consensus 239 ~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~Pp-------L 311 (469)
T PRK10923 239 DEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPP-------L 311 (469)
T ss_pred eccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCC-------c
Confidence 9999999999999999998631 346899998753 35778888998777776666 5
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHH
Q psy4285 440 DYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488 (533)
Q Consensus 440 ~~~~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~ 488 (533)
+..++|+..+++.+-. +.....|.....+.......+..+.||++++
T Consensus 312 reR~~Di~~l~~~~l~--~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~ 358 (469)
T PRK10923 312 RERREDIPRLARHFLQ--VAARELGVEAKLLHPETEAALTRLAWPGNVR 358 (469)
T ss_pred ccchhhHHHHHHHHHH--HHHHHcCCCCCCcCHHHHHHHHhCCCCChHH
Confidence 5555566666554221 1212234333345567788889999999987
No 268
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.03 E-value=1.3e-10 Score=116.21 Aligned_cols=74 Identities=39% Similarity=0.583 Sum_probs=64.4
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+|+.+++|||+||.+++|+|||+|||+.++|++++.. +.++..+ ++.+..++..+.||+|+++|.++
T Consensus 133 lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~~------~~i~~~e-----~~~l~~i~~~~~gd~r~~i~~lq 201 (325)
T COG0470 133 LEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKPPSRL------EAIAWLE-----DQGLEEIAAVAEGDARKAINPLQ 201 (325)
T ss_pred hccCCCCeEEEEEcCChhhccchhhhcceeeecCCchHH------HHHHHhh-----ccchhHHHHHHHHHHHcCCCHHH
Confidence 799999999999999999999999999999999995544 4444344 46688999999999999999999
Q ss_pred HHHHh
Q psy4285 81 SAATA 85 (533)
Q Consensus 81 ~~~~~ 85 (533)
.++..
T Consensus 202 ~~~~~ 206 (325)
T COG0470 202 ALAAL 206 (325)
T ss_pred HHHHh
Confidence 99875
No 269
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.02 E-value=2e-08 Score=108.22 Aligned_cols=155 Identities=12% Similarity=0.057 Sum_probs=95.4
Q ss_pred hhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHc-----------cccc------------------cC
Q psy4285 287 LNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLY-----------TKAQ------------------FN 337 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~-----------~~~~------------------~~ 337 (533)
+.||+.+...+.-........++||.|+||||||++|+++++.+- |... ..
T Consensus 6 ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~ 85 (633)
T TIGR02442 6 IVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRP 85 (633)
T ss_pred hcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCC
Confidence 356777776666665555556799999999999999999998871 1110 01
Q ss_pred cceEEecCCC----CCchhHHHHHHHH--HHhccc-CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc------------
Q psy4285 338 AMVLELNASD----DRGIGIVRDQIFQ--FASTKT-MHKSSYKLIILDEADAMTNDAQNALRRIIEKF------------ 398 (533)
Q Consensus 338 ~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~-~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~------------ 398 (533)
.+++.+.... ..+...+...+.. ...... ...+..++|+|||++.++...++.|++.|++.
T Consensus 86 ~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~ 165 (633)
T TIGR02442 86 VPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVS 165 (633)
T ss_pred CCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceee
Confidence 2333332221 0111111211110 000011 11245679999999999999999999999854
Q ss_pred -CCCcEEEEEeCCCC-CCChhhhccce-eeeecCCC-HHHHHHHhhc
Q psy4285 399 -TTNVRFCIICNYLS-KIPPAIQSRCT-RFRFGPLD-SSLIMSRLDY 441 (533)
Q Consensus 399 -~~~~~~I~~~n~~~-~l~~~l~sR~~-~i~~~~~~-~~~~~~~l~~ 441 (533)
+.++.+|.++|..+ .+.++|.+||. .+.+.++. .++..+++.+
T Consensus 166 ~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 166 HPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred ecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHH
Confidence 24577888888643 68899999995 45555554 3444444443
No 270
>KOG0732|consensus
Probab=98.99 E-value=5.3e-09 Score=113.45 Aligned_cols=151 Identities=23% Similarity=0.290 Sum_probs=93.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCC------CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD------DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
.+||+||||||||..|+++|..+..... ...++.-.+++ +....+.+-+...+.. ..+.|+++||||
T Consensus 301 gvL~~GppGTGkTl~araLa~~~s~~~~-kisffmrkgaD~lskwvgEaERqlrllFeeA~k------~qPSIIffdeId 373 (1080)
T KOG0732|consen 301 GVLFHGPPGTGKTLMARALAAACSRGNR-KISFFMRKGADCLSKWVGEAERQLRLLFEEAQK------TQPSIIFFDEID 373 (1080)
T ss_pred ceeecCCCCCchhHHHHhhhhhhccccc-ccchhhhcCchhhccccCcHHHHHHHHHHHHhc------cCceEEeccccc
Confidence 3999999999999999999998744321 11122222222 1223344433333332 246799999999
Q ss_pred CCCH-----------HHHHHHHHHHHhcC--CCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcC---
Q psy4285 382 AMTN-----------DAQNALRRIIEKFT--TNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYD--- 442 (533)
Q Consensus 382 ~l~~-----------~~~~~Ll~~le~~~--~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~--- 442 (533)
-+.+ .....|+.+|+..+ ..+++|.+||+++.++|++++ ||. .+.|+-|+.+...+++.-.
T Consensus 374 GlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrk 453 (1080)
T KOG0732|consen 374 GLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRK 453 (1080)
T ss_pred cccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccC
Confidence 7754 22355777777543 456777888999999999988 785 5666666666666665544
Q ss_pred --HHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q psy4285 443 --DISFFNIIIWYIKIQEIKIEKGLALTDI 470 (533)
Q Consensus 443 --~~~~~~ll~~~~~l~~l~~~~~~~~~di 470 (533)
|.-...++.+ +.. .+.||.++|+
T Consensus 454 w~~~i~~~l~~~---la~--~t~gy~gaDl 478 (1080)
T KOG0732|consen 454 WEPPISRELLLW---LAE--ETSGYGGADL 478 (1080)
T ss_pred CCCCCCHHHHHH---HHH--hccccchHHH
Confidence 2222222221 111 5567888774
No 271
>KOG0735|consensus
Probab=98.98 E-value=9e-09 Score=105.86 Aligned_cols=168 Identities=16% Similarity=0.127 Sum_probs=107.2
Q ss_pred CCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCc--hhHHHHHHHHHHhcccCCCCCcEEEEEeCCCC
Q psy4285 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG--IGIVRDQIFQFASTKTMHKSSYKLIILDEADA 382 (533)
Q Consensus 305 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~ 382 (533)
+.++++++||+|+|||.+++++++++.... ...+..+++++..+ .+.++..+........ .-.+.|+++|++|.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~--~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~--~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDL--IAHVEIVSCSTLDGSSLEKIQKFLNNVFSEAL--WYAPSIIVLDDLDC 505 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhcccc--ceEEEEEechhccchhHHHHHHHHHHHHHHHH--hhCCcEEEEcchhh
Confidence 345799999999999999999999987543 34455556655443 3344444443322221 13578999999999
Q ss_pred CCH-------------HHHHH-HHHHHHh---cCCCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhhcC
Q psy4285 383 MTN-------------DAQNA-LRRIIEK---FTTNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 383 l~~-------------~~~~~-Ll~~le~---~~~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~~ 442 (533)
+.. ..... |.+.+.. ....+.+|++++....+.|.|.| +| .++.+++|...+..++|..+
T Consensus 506 l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~ 585 (952)
T KOG0735|consen 506 LASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTI 585 (952)
T ss_pred hhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHH
Confidence 854 11122 3344433 34446788889999999999988 45 47889999999999999887
Q ss_pred -HHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy4285 443 -DISF-FNIIIWYIKIQEIKIEKGLALTDILTEISLLV 478 (533)
Q Consensus 443 -~~~~-~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~ 478 (533)
.... ....+....+.. .+.||.+.|+..-.-+++
T Consensus 586 ~s~~~~~~~~~dLd~ls~--~TEGy~~~DL~ifVeRai 621 (952)
T KOG0735|consen 586 FSKNLSDITMDDLDFLSV--KTEGYLATDLVIFVERAI 621 (952)
T ss_pred HHhhhhhhhhHHHHHHHH--hcCCccchhHHHHHHHHH
Confidence 1111 111111222222 778999998765444433
No 272
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.96 E-value=1.9e-09 Score=113.34 Aligned_cols=131 Identities=18% Similarity=0.232 Sum_probs=83.2
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCc--hhHHHHH-HHHHH-hcccCCCCCcEEEEEeCCCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG--IGIVRDQ-IFQFA-STKTMHKSSYKLIILDEADA 382 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~-~~~~~~~~~~~vliiDE~d~ 382 (533)
.|+||+|+||||||++|+++++..... .+.....++..+ ...++.. .+.+. .......+..++++|||++.
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~-----~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~ 311 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRA-----VYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDK 311 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcc-----eEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhh
Confidence 379999999999999999999875211 111100011000 0111110 00000 00011124568999999999
Q ss_pred CCHHHHHHHHHHHHhc-------------CCCcEEEEEeCCCC-------------CCChhhhcccee--eeecCCCHHH
Q psy4285 383 MTNDAQNALRRIIEKF-------------TTNVRFCIICNYLS-------------KIPPAIQSRCTR--FRFGPLDSSL 434 (533)
Q Consensus 383 l~~~~~~~Ll~~le~~-------------~~~~~~I~~~n~~~-------------~l~~~l~sR~~~--i~~~~~~~~~ 434 (533)
++...+.+|++.|++. +..+++|+++|... .++++++|||+. +...+++.+.
T Consensus 312 l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~ 391 (509)
T smart00350 312 MDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEER 391 (509)
T ss_pred CCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHH
Confidence 9999999999999863 35688999998652 589999999953 3445666666
Q ss_pred HHHHhhcC
Q psy4285 435 IMSRLDYD 442 (533)
Q Consensus 435 ~~~~l~~~ 442 (533)
-..++.++
T Consensus 392 d~~i~~~i 399 (509)
T smart00350 392 DRELAKHV 399 (509)
T ss_pred HHHHHHHH
Confidence 66666554
No 273
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.95 E-value=1.2e-08 Score=106.87 Aligned_cols=168 Identities=15% Similarity=0.143 Sum_probs=108.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHH-HHH----Hh-----cccCCCCCcEEEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI-FQF----AS-----TKTMHKSSYKLIIL 377 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~-----~~~~~~~~~~vlii 377 (533)
+++++|++||||+++|+++....... +.+++.+++..... ..+...+ +.. .. ......+..++|||
T Consensus 168 ~vli~Ge~GtGK~~lA~~ih~~s~~~---~~~~~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l 243 (457)
T PRK11361 168 SVLISGESGTGKELIARAIHYNSRRA---KGPFIKVNCAALPE-SLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLL 243 (457)
T ss_pred EEEEEcCCCccHHHHHHHHHHhCCCC---CCCeEEEECCCCCH-HHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEE
Confidence 59999999999999999998765322 45788888776432 2222211 100 00 00011245679999
Q ss_pred eCCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHHHh
Q psy4285 378 DEADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 378 DE~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~~l 439 (533)
||++.++...|..|++.+++. +.++++|++||.. ..+.+.+..|+..+.+.-|+ |
T Consensus 244 d~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~pp-------L 316 (457)
T PRK11361 244 DEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPP-------L 316 (457)
T ss_pred echhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCC-------h
Confidence 999999999999999999753 1357899999754 25667777888766666666 3
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHH
Q psy4285 440 DYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488 (533)
Q Consensus 440 ~~~~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~ 488 (533)
+..++|+..++..+ +.++....+.....+.......+..+.||++++
T Consensus 317 reR~~di~~l~~~~--l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~ 363 (457)
T PRK11361 317 RDRREDISLLANHF--LQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIR 363 (457)
T ss_pred hhchhhHHHHHHHH--HHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHH
Confidence 33444554444432 112212223333345567778889999999987
No 274
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.95 E-value=5.5e-10 Score=100.60 Aligned_cols=119 Identities=20% Similarity=0.210 Sum_probs=65.3
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEe------cC----------CCCCc-
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLEL------NA----------SDDRG- 350 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~------~~----------~~~~~- 350 (533)
.||+.....+.-+...+ .|++++||||||||++|+.+...+-.-. .....++ .. .-.+.
T Consensus 6 ~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lLP~l~--~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~p 81 (206)
T PF01078_consen 6 VGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLLPPLT--EEEALEVSKIYSVAGLGPDEGLIRQRPFRAP 81 (206)
T ss_dssp SSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS--CC--EECCESS--S-TT---S---EEEE---EEEE
T ss_pred cCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhCCCCc--hHHHhhhccccccccCCCCCceecCCCcccC
Confidence 46777777766555543 4799999999999999999997541110 0000000 00 00000
Q ss_pred --hhHHHHHHHHHHhcc--cCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh-------------cCCCcEEEEEeCC
Q psy4285 351 --IGIVRDQIFQFASTK--TMHKSSYKLIILDEADAMTNDAQNALRRIIEK-------------FTTNVRFCIICNY 410 (533)
Q Consensus 351 --~~~~~~~~~~~~~~~--~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~-------------~~~~~~~I~~~n~ 410 (533)
.-....+++.-.... ....+..+|||+||+..+.....+.|++.+++ +|.+..+|.++|.
T Consensus 82 hhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 82 HHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp -TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S
T ss_pred CCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEecc
Confidence 001111111110000 00125678999999999999999999999986 3667778888764
No 275
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.95 E-value=4e-08 Score=104.73 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=85.8
Q ss_pred CCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCC--CC--CchhHHHHHHH--HHHhcc-cCCCCCcEEEEE
Q psy4285 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNAS--DD--RGIGIVRDQIF--QFASTK-TMHKSSYKLIIL 377 (533)
Q Consensus 305 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~--~~~~~~-~~~~~~~~vlii 377 (533)
...|++|.|+||||||++|+++++.+... .+++.+... .. .+.-.+...+. .+.... ........+|++
T Consensus 15 ~~g~vLl~G~~GtgKs~lar~l~~~~~~~----~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~l 90 (589)
T TIGR02031 15 SLGGVAIRARAGTGKTALARALAEILPPI----MPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYV 90 (589)
T ss_pred CcceEEEEcCCCcHHHHHHHHHHHhCCcC----CCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEec
Confidence 36689999999999999999999976321 235544421 10 11101111110 000011 111245679999
Q ss_pred eCCCCCCHHHHHHHHHHHHhc-------------CCCcEEEEEeCCCC---CCChhhhccce-eeeecC-CCHHHHHHHh
Q psy4285 378 DEADAMTNDAQNALRRIIEKF-------------TTNVRFCIICNYLS---KIPPAIQSRCT-RFRFGP-LDSSLIMSRL 439 (533)
Q Consensus 378 DE~d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~n~~~---~l~~~l~sR~~-~i~~~~-~~~~~~~~~l 439 (533)
||++.+++..++.|+..|++. +..+++|.++|... .+.+++.+||. .+...+ ++.++..+++
T Consensus 91 DEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil 170 (589)
T TIGR02031 91 DMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIV 170 (589)
T ss_pred cchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHH
Confidence 999999999999999999864 24678888888765 79999999995 344444 3444445555
Q ss_pred hcC
Q psy4285 440 DYD 442 (533)
Q Consensus 440 ~~~ 442 (533)
.+.
T Consensus 171 ~~~ 173 (589)
T TIGR02031 171 RRE 173 (589)
T ss_pred HHH
Confidence 543
No 276
>PRK06921 hypothetical protein; Provisional
Probab=98.95 E-value=1.6e-09 Score=103.89 Aligned_cols=111 Identities=19% Similarity=0.227 Sum_probs=69.0
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCC----
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADA---- 382 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~---- 382 (533)
.+++|+||||||||+++.++++++.... +..++.+...+.. ..+......+...... -...++|||||++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~--g~~v~y~~~~~l~--~~l~~~~~~~~~~~~~-~~~~dlLiIDDl~~~~~g 192 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKK--GVPVLYFPFVEGF--GDLKDDFDLLEAKLNR-MKKVEVLFIDDLFKPVNG 192 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhc--CceEEEEEHHHHH--HHHHHHHHHHHHHHHH-hcCCCEEEEeccccccCC
Confidence 4699999999999999999999985442 2344444433211 1111111111100000 13568999999943
Q ss_pred ---CCHHHHHHHHHHHHhcC-CCcEEEEEeCCCC----CCChhhhccc
Q psy4285 383 ---MTNDAQNALRRIIEKFT-TNVRFCIICNYLS----KIPPAIQSRC 422 (533)
Q Consensus 383 ---l~~~~~~~Ll~~le~~~-~~~~~I~~~n~~~----~l~~~l~sR~ 422 (533)
.+.+.+..|+.+++... .+..+|+|||.+. .+++.+.||+
T Consensus 193 ~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~~~el~~~~~~l~sRi 240 (266)
T PRK06921 193 KPRATEWQIEQMYSVLNYRYLNHKPILISSELTIDELLDIDEALGSRI 240 (266)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHhhhhhHHHHHH
Confidence 56667778999998654 3466888998653 3456777764
No 277
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.95 E-value=4.1e-09 Score=111.56 Aligned_cols=154 Identities=18% Similarity=0.264 Sum_probs=84.3
Q ss_pred hhchhhhhhhcccccccCCC----c-eeEeCCCCCChHHHHHHHHHHHccccc-cCcceEEecCCC--------------
Q psy4285 288 NESMDLCYKINRFIDENELP----H-LLFYGPPGTGKTTTILACARKLYTKAQ-FNAMVLELNASD-------------- 347 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~----~-~ll~GppGtGKT~la~~la~~l~~~~~-~~~~~~~~~~~~-------------- 347 (533)
.+|++.+..+..++.....+ . ++|+|||||||||+++.+++.+..... +..++......+
T Consensus 87 ~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~ 166 (637)
T TIGR00602 87 AVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSN 166 (637)
T ss_pred cCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhcccc
Confidence 34555555555555543222 2 899999999999999999998733210 000000000000
Q ss_pred -CCchhHHHHHHHHHHhcccC----CCCCcEEEEEeCCCCCCHH---HHHHHHH-HHHhcCCCcEEEEEeCC-CC-----
Q psy4285 348 -DRGIGIVRDQIFQFASTKTM----HKSSYKLIILDEADAMTND---AQNALRR-IIEKFTTNVRFCIICNY-LS----- 412 (533)
Q Consensus 348 -~~~~~~~~~~~~~~~~~~~~----~~~~~~vliiDE~d~l~~~---~~~~Ll~-~le~~~~~~~~I~~~n~-~~----- 412 (533)
......+...+......... ......||+|||++.+... .+..+++ ...+ ...+.+|++++. +.
T Consensus 167 ~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e-~~~~pLI~I~TE~~~~~~~~ 245 (637)
T TIGR00602 167 FQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVS-IGRCPLVFIITESLEGDNNQ 245 (637)
T ss_pred ccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhc-CCCceEEEEecCCccccccc
Confidence 01122233333222111000 1245789999999776543 3333433 2222 234456665542 11
Q ss_pred -----C----CChhhhc--cceeeeecCCCHHHHHHHhhcC
Q psy4285 413 -----K----IPPAIQS--RCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 413 -----~----l~~~l~s--R~~~i~~~~~~~~~~~~~l~~~ 442 (533)
. +.+++++ |+..+.|.|++..++.+.|.++
T Consensus 246 ~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rI 286 (637)
T TIGR00602 246 RRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRI 286 (637)
T ss_pred cccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHH
Confidence 1 3378887 6678999999999988888887
No 278
>PRK08116 hypothetical protein; Validated
Probab=98.95 E-value=1.7e-09 Score=103.88 Aligned_cols=115 Identities=23% Similarity=0.247 Sum_probs=76.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHH--------HHHHhcccCCCCCcEEEEEeC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI--------FQFASTKTMHKSSYKLIILDE 379 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~vliiDE 379 (533)
.++|+|+||||||++|.++++.+... +..++.++.++... .+.... ..+... -...++|||||
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~ll~--~i~~~~~~~~~~~~~~~~~~----l~~~dlLviDD 186 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQLLN--RIKSTYKSSGKEDENEIIRS----LVNADLLILDD 186 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHH--HHHHHHhccccccHHHHHHH----hcCCCEEEEec
Confidence 49999999999999999999998654 34455555433110 111000 001100 13457999999
Q ss_pred C--CCCCHHHHHHHHHHHHhc-CCCcEEEEEeCCCC-----CCChhhhcc----ceeeeecCCC
Q psy4285 380 A--DAMTNDAQNALRRIIEKF-TTNVRFCIICNYLS-----KIPPAIQSR----CTRFRFGPLD 431 (533)
Q Consensus 380 ~--d~l~~~~~~~Ll~~le~~-~~~~~~I~~~n~~~-----~l~~~l~sR----~~~i~~~~~~ 431 (533)
+ +..+.+.+..|+.+++.. ..+..+|+|||... .+++.+.|| |..+.+..++
T Consensus 187 lg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d 250 (268)
T PRK08116 187 LGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKS 250 (268)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC
Confidence 9 556888899999999864 34567999998764 256788888 4566666655
No 279
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=1.3e-09 Score=104.15 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=51.6
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMR 73 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r 73 (533)
|||||++++|||+|+++++++|||+|||+.++|+++. + ..++++....++..++|++.
T Consensus 119 LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~~-------------~--~~i~~~~~~~l~~~~~g~~~ 176 (290)
T PRK05917 119 LEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPMEE-------------K--TLVSKEDIAYLIGYAQGKES 176 (290)
T ss_pred hhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccchh-------------c--cCCCHHHHHHHHHHhCCChh
Confidence 6999999999999999999999999999999999861 1 24678888889999999995
No 280
>PRK04195 replication factor C large subunit; Provisional
Probab=98.95 E-value=5.5e-09 Score=109.48 Aligned_cols=93 Identities=20% Similarity=0.282 Sum_probs=82.8
Q ss_pred CceEEEEEcCCCCcCch-hhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy4285 6 TNVRFCIICNYLSKITP-AIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQSAAT 84 (533)
Q Consensus 6 ~~~~~il~~~~~~~i~~-~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~~~~~ 84 (533)
.+..+|++||.+..+.+ +|+|||+.++|++|+.+++..+|++++.++++.+++++++.|+..++||+|.|+|.|+.++.
T Consensus 129 ~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~ 208 (482)
T PRK04195 129 AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAE 208 (482)
T ss_pred CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 34668999999998888 99999999999999999999999999999999999999999999999999999999999654
Q ss_pred hCCCCcchhhHHhhh
Q psy4285 85 AHADEVNEDTIFTLL 99 (533)
Q Consensus 85 ~~~~~i~~~~i~~~~ 99 (533)
....++.+.+..+.
T Consensus 209 -~~~~it~~~v~~~~ 222 (482)
T PRK04195 209 -GYGKLTLEDVKTLG 222 (482)
T ss_pred -CCCCCcHHHHHHhh
Confidence 44568888876544
No 281
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.93 E-value=7.1e-09 Score=106.56 Aligned_cols=110 Identities=25% Similarity=0.378 Sum_probs=89.0
Q ss_pred CceEEEEEc--CCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhc--CC-CCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 6 TNVRFCIIC--NYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQE--KV-NVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 6 ~~~~~il~~--~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~--~~-~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
+.+.||.+| |+.+.++++|+|||++++|++++.+++..+|++++... ++ .+++++++.+++.++||+|+++|.|+
T Consensus 119 ~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 119 GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 445566554 56779999999999999999999999999999987653 44 78899999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhhccccch--hHHHHHhc
Q psy4285 81 SAATAHADEVNEDTIFTLLVSRVEKYRP--STLDELVS 116 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~~ek~~~--~~l~~lls 116 (533)
.++.. ...|+.+.+.++++.....|.. ..++++++
T Consensus 199 ~~~~~-~~~It~~~v~~~~~~~~~~~d~~~~~~~~~is 235 (413)
T PRK13342 199 LAALG-VDSITLELLEEALQKRAARYDKDGDEHYDLIS 235 (413)
T ss_pred HHHHc-cCCCCHHHHHHHHhhhhhccCCCccHHHHHHH
Confidence 98875 5569999988877765444544 35666654
No 282
>KOG2028|consensus
Probab=98.92 E-value=5e-09 Score=99.75 Aligned_cols=112 Identities=21% Similarity=0.189 Sum_probs=89.1
Q ss_pred CceEEEEEc--CCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHh------h-----c--CCCCCHHHHHHHHHhcCC
Q psy4285 6 TNVRFCIIC--NYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIE------Q-----E--KVNVTPDGKKAIIDLSDG 70 (533)
Q Consensus 6 ~~~~~il~~--~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~------~-----~--~~~~~~~~~~~~~~~~~g 70 (533)
+.+.||-+| ||+|+++.+|.|||.+|.+++++.+++..+|.+... + . .+.+++..++.++..|.|
T Consensus 249 G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdG 328 (554)
T KOG2028|consen 249 GDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG 328 (554)
T ss_pred CceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCc
Confidence 445566655 899999999999999999999999999999999643 1 1 134678889999999999
Q ss_pred CHHHHHHHHHHHHHh----CC----CCcchhhHHhhhhhhccccchh--HHHHHhch
Q psy4285 71 DMRKVLNILQSAATA----HA----DEVNEDTIFTLLVSRVEKYRPS--TLDELVSH 117 (533)
Q Consensus 71 ~~r~a~~~l~~~~~~----~~----~~i~~~~i~~~~~~~~ek~~~~--~l~~lls~ 117 (533)
|.|.|+|.||..... .+ ..++.+++++.++....-|++. .||+.+|-
T Consensus 329 DaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA 385 (554)
T KOG2028|consen 329 DARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISA 385 (554)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhccceecccchhHHHHHHH
Confidence 999999999988332 11 1388888988888777777764 68888763
No 283
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=3.4e-08 Score=87.65 Aligned_cols=92 Identities=27% Similarity=0.272 Sum_probs=75.3
Q ss_pred CCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhcccee
Q psy4285 345 ASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTR 424 (533)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~ 424 (533)
..+..+.+.+|+.+....... ...+ +||+++|+|+.+++|+|++++||||.++.||++|+.+..++|+++|||..
T Consensus 33 ~~~~i~Vd~iReii~~~~~~~----~~~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~ 107 (206)
T PRK08485 33 IKEEFKIEDAKEVIAEAYIAE----SEEK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLII 107 (206)
T ss_pred CCCCCCHHHHHHHHHHHhhCC----CCcE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhhee
Confidence 444578889999877755443 2233 46889999999999999999999999999999999999999999999975
Q ss_pred -------------eeecCCCHHHHHHHhhc
Q psy4285 425 -------------FRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 425 -------------i~~~~~~~~~~~~~l~~ 441 (533)
+.+.+++.+++.+.+.+
T Consensus 108 ~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 108 EKRKQKKPVKPLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred ccccccccccccccccCCCCHHHHHHHHHH
Confidence 66777877777776654
No 284
>PRK15115 response regulator GlrR; Provisional
Probab=98.91 E-value=1.9e-08 Score=104.98 Aligned_cols=169 Identities=14% Similarity=0.116 Sum_probs=107.6
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHh---------cc-cCCCCCcEEEE
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS---------TK-TMHKSSYKLII 376 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~vli 376 (533)
++++++|++|||||++|+++.+..... +.+++.+++..... ..+...+..... .. .......++||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~---~~~f~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ 233 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRA---SKPFIAINCGALPE-QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCC---CCCeEEEeCCCCCH-HHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEE
Confidence 358999999999999999998865322 46788888876422 222222111000 00 01124467999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcC-----------CCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHHH
Q psy4285 377 LDEADAMTNDAQNALRRIIEKFT-----------TNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMSR 438 (533)
Q Consensus 377 iDE~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~~ 438 (533)
|||++.|+...|..|++.+++.. .++++|++|+.. ..+.+.+..|+..+.+.-|+ ++++
T Consensus 234 l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPp---Lr~R 310 (444)
T PRK15115 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKIPA---LAER 310 (444)
T ss_pred EEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCC---hHhc
Confidence 99999999999999999998632 257899988753 24566677777767776666 3333
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHH
Q psy4285 439 LDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488 (533)
Q Consensus 439 l~~~~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~ 488 (533)
-..+|.-+..++.. +....+.....+-......+..+.||++++
T Consensus 311 ~eDi~~l~~~~l~~------~~~~~~~~~~~~~~~a~~~L~~~~WpgNvr 354 (444)
T PRK15115 311 TEDIPLLANHLLRQ------AAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 (444)
T ss_pred cccHHHHHHHHHHH------HHHHhCCCCCCcCHHHHHHHHhCCCCChHH
Confidence 33333333333332 112223222335566778889999999987
No 285
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.90 E-value=9.1e-10 Score=104.66 Aligned_cols=98 Identities=23% Similarity=0.319 Sum_probs=65.4
Q ss_pred CCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHH------HHhcccCCCCCcEEEEEeC
Q psy4285 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ------FASTKTMHKSSYKLIILDE 379 (533)
Q Consensus 306 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~vliiDE 379 (533)
..+++|+||||||||++|-++++++. .. +..+..++.++.. ..+...... +... -...++|||||
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~~--g~sv~f~~~~el~--~~Lk~~~~~~~~~~~l~~~----l~~~dlLIiDD 175 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-KA--GISVLFITAPDLL--SKLKAAFDEGRLEEKLLRE----LKKVDLLIIDD 175 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-Hc--CCeEEEEEHHHHH--HHHHHHHhcCchHHHHHHH----hhcCCEEEEec
Confidence 34799999999999999999999997 33 4555555554421 111111100 0110 13578999999
Q ss_pred CCCC--CHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q psy4285 380 ADAM--TNDAQNALRRIIEKFTTNVRFCIICNYLS 412 (533)
Q Consensus 380 ~d~l--~~~~~~~Ll~~le~~~~~~~~I~~~n~~~ 412 (533)
+.+. +.+..+.+++++.........++|+|.+.
T Consensus 176 lG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN~~~ 210 (254)
T COG1484 176 IGYEPFSQEEADLLFQLISRRYESRSLIITSNLSF 210 (254)
T ss_pred ccCccCCHHHHHHHHHHHHHHHhhccceeecCCCh
Confidence 9985 56677888888876555555599998765
No 286
>KOG1051|consensus
Probab=98.90 E-value=7.5e-08 Score=104.01 Aligned_cols=119 Identities=21% Similarity=0.287 Sum_probs=84.7
Q ss_pred HHHHhhhchhhhhhhcccccccC-----C-Cc--eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC------
Q psy4285 283 LRWLLNESMDLCYKINRFIDENE-----L-PH--LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD------ 348 (533)
Q Consensus 283 l~~~~~~~~~~~~~l~~~~~~~~-----~-~~--~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------ 348 (533)
+.....||++++..+..++...+ . |. ++|.||.|+|||-+|+++|..+++. ...++.++.++.
T Consensus 560 L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs---e~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 560 LHERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS---EENFIRLDMSEFQEVSKL 636 (898)
T ss_pred HHhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC---ccceEEechhhhhhhhhc
Confidence 33456889888877766654322 1 22 8999999999999999999999776 456677766541
Q ss_pred -------CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCC
Q psy4285 349 -------RGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNY 410 (533)
Q Consensus 349 -------~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~ 410 (533)
.+......+.... . ..++.|++|||||...+..++.|++++|++ -.|+.||+|+|.
T Consensus 637 igsp~gyvG~e~gg~Lteav-r-----rrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 637 IGSPPGYVGKEEGGQLTEAV-K-----RRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred cCCCcccccchhHHHHHHHH-h-----cCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 1121221111111 1 246789999999999999999999999974 367899999864
No 287
>KOG1942|consensus
Probab=98.90 E-value=1.5e-08 Score=93.72 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=62.5
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCC-------------CCCCChhhhccceeeeecCCCHHHHHH
Q psy4285 371 SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY-------------LSKIPPAIQSRCTRFRFGPLDSSLIMS 437 (533)
Q Consensus 371 ~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~-------------~~~l~~~l~sR~~~i~~~~~~~~~~~~ 437 (533)
-++||||||+++++-+....|.+.+|.+ -...+|+++|+ |..+++.+++|+..++-.+++++++++
T Consensus 296 vPGVLFIDEVhMLDiEcFTyL~kalES~-iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~ 374 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLDIECFTYLHKALESP-IAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQ 374 (456)
T ss_pred cCcceEeeehhhhhhHHHHHHHHHhcCC-CCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHH
Confidence 3789999999999999999999999875 34678888874 456899999999999999999999999
Q ss_pred HhhcC
Q psy4285 438 RLDYD 442 (533)
Q Consensus 438 ~l~~~ 442 (533)
++...
T Consensus 375 Ii~~R 379 (456)
T KOG1942|consen 375 IIKIR 379 (456)
T ss_pred HHHHH
Confidence 99887
No 288
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.89 E-value=2.9e-09 Score=100.12 Aligned_cols=113 Identities=19% Similarity=0.250 Sum_probs=72.8
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCch---------hHHHHHHHHHHhcccCCCCCcEEEEE
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI---------GIVRDQIFQFASTKTMHKSSYKLIIL 377 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~vlii 377 (533)
.+++|+|+||||||+++.++++.+... +..+..++.++.... ......+..+ ...++|||
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~---g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--------~~~dlLvI 168 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR---GKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--------SNVDLLVI 168 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--------ccCCEEEE
Confidence 369999999999999999999998554 334444443321100 0001111111 35789999
Q ss_pred eCCCCCC--HHHHHHHHHHHHhcC-CCcEEEEEeCCCC-----CCChhhhccce-----eeeecCC
Q psy4285 378 DEADAMT--NDAQNALRRIIEKFT-TNVRFCIICNYLS-----KIPPAIQSRCT-----RFRFGPL 430 (533)
Q Consensus 378 DE~d~l~--~~~~~~Ll~~le~~~-~~~~~I~~~n~~~-----~l~~~l~sR~~-----~i~~~~~ 430 (533)
||++... ......|+.+++... ....+|+|||... .+.+.+.||+. .+.|...
T Consensus 169 DDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ri~sRl~~~~~~~i~f~~~ 234 (244)
T PRK07952 169 DEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWD 234 (244)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhChHHHHHHHHCCceEEEeeCC
Confidence 9998764 445667888998654 4678999999754 35667777762 4555543
No 289
>KOG1514|consensus
Probab=98.89 E-value=9.1e-08 Score=98.88 Aligned_cols=150 Identities=21% Similarity=0.275 Sum_probs=100.7
Q ss_pred hhhhhhcccccc-cCCCceeEeCCCCCChHHHHHHHHHHHcccc----ccCcceEEecCCCCCchhHHHHHHH-------
Q psy4285 292 DLCYKINRFIDE-NELPHLLFYGPPGTGKTTTILACARKLYTKA----QFNAMVLELNASDDRGIGIVRDQIF------- 359 (533)
Q Consensus 292 ~~~~~l~~~~~~-~~~~~~ll~GppGtGKT~la~~la~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------- 359 (533)
++...+..++.. +....+.++|-||||||.+++.+.+.+.... .....++++|+....+...+-+.+-
T Consensus 407 ~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~ 486 (767)
T KOG1514|consen 407 EIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGER 486 (767)
T ss_pred HHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCc
Confidence 344455555555 2222489999999999999999999875221 1234678888876555433332221
Q ss_pred -----------HHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEeCCCC----CCChhhhcc
Q psy4285 360 -----------QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF---TTNVRFCIICNYLS----KIPPAIQSR 421 (533)
Q Consensus 360 -----------~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~---~~~~~~I~~~n~~~----~l~~~l~sR 421 (533)
.... .+.......|++|||.|.|-...|..|+.+++.+ .....+|.++|..+ .+...+.||
T Consensus 487 ~~~~~al~~L~~~f~-~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSR 565 (767)
T KOG1514|consen 487 VTWDAALEALNFRFT-VPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSR 565 (767)
T ss_pred ccHHHHHHHHHHhhc-cCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhh
Confidence 1111 1112356789999999999887788888888754 34566666777554 234466677
Q ss_pred c--eeeeecCCCHHHHHHHhhcC
Q psy4285 422 C--TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 422 ~--~~i~~~~~~~~~~~~~l~~~ 442 (533)
. ..+.|.|++.+|+.+++...
T Consensus 566 lg~tRi~F~pYth~qLq~Ii~~R 588 (767)
T KOG1514|consen 566 LGLTRICFQPYTHEQLQEIISAR 588 (767)
T ss_pred ccceeeecCCCCHHHHHHHHHHh
Confidence 6 69999999999999988776
No 290
>PF13173 AAA_14: AAA domain
Probab=98.88 E-value=1.5e-08 Score=86.33 Aligned_cols=119 Identities=24% Similarity=0.358 Sum_probs=79.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHH-HHHHHHHhcccCCCCCcEEEEEeCCCCCCHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR-DQIFQFASTKTMHKSSYKLIILDEADAMTND 386 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~ 386 (533)
.++++||+|+||||+++.+++.+. . ...++.++..+........ +....+.... ..+..++||||++.+. +
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~-~---~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~iDEiq~~~-~ 75 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL-P---PENILYINFDDPRDRRLADPDLLEYFLELI---KPGKKYIFIDEIQYLP-D 75 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc-c---cccceeeccCCHHHHHHhhhhhHHHHHHhh---ccCCcEEEEehhhhhc-c
Confidence 479999999999999999999874 1 3455666655533221110 0112222211 1256799999999996 4
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeCCCC----CCChhhhccceeeeecCCCHHHH
Q psy4285 387 AQNALRRIIEKFTTNVRFCIICNYLS----KIPPAIQSRCTRFRFGPLDSSLI 435 (533)
Q Consensus 387 ~~~~Ll~~le~~~~~~~~I~~~n~~~----~l~~~l~sR~~~i~~~~~~~~~~ 435 (533)
....+....+.. .+..+|+|+.... ...+.+..|...+.+.|++-.|.
T Consensus 76 ~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 76 WEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 556666666654 5688999886554 34567777889999999987654
No 291
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.88 E-value=3.9e-09 Score=103.83 Aligned_cols=118 Identities=25% Similarity=0.284 Sum_probs=75.8
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHH-H---HHHhcccCCCCCcEEEEEeCCCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI-F---QFASTKTMHKSSYKLIILDEADA 382 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~vliiDE~d~ 382 (533)
.+++|+||||||||+++.++|+++... +..++.++..+... .+.... . ....... .-...++|||||++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~---g~~V~y~t~~~l~~--~l~~~~~~~~~~~~~~~~-~l~~~DLLIIDDlG~ 257 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR---GKSVIYRTADELIE--ILREIRFNNDKELEEVYD-LLINCDLLIIDDLGT 257 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEEHHHHHH--HHHHHHhccchhHHHHHH-HhccCCEEEEeccCC
Confidence 469999999999999999999998654 44555555543211 111100 0 0000000 013568999999965
Q ss_pred C--CHHHHHHHHHHHHhcC-CCcEEEEEeCCCC-----CCChhhhccc----eeeeecCC
Q psy4285 383 M--TNDAQNALRRIIEKFT-TNVRFCIICNYLS-----KIPPAIQSRC----TRFRFGPL 430 (533)
Q Consensus 383 l--~~~~~~~Ll~~le~~~-~~~~~I~~~n~~~-----~l~~~l~sR~----~~i~~~~~ 430 (533)
. +...++.|+.++++.. .+..+|+|||... .+++.+.||+ ..+.|...
T Consensus 258 e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G~ 317 (329)
T PRK06835 258 EKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYGE 317 (329)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecCc
Confidence 4 6777889999998754 3467899998653 3567888886 34555443
No 292
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.87 E-value=2.6e-08 Score=104.66 Aligned_cols=168 Identities=18% Similarity=0.181 Sum_probs=108.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHH-HH----HHhc-----ccCCCCCcEEEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI-FQ----FAST-----KTMHKSSYKLIIL 377 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~-----~~~~~~~~~vlii 377 (533)
.+++.|.+||||+++|+++.+..... ..+++.+++.... ...+...+ +. +... .....+..++|+|
T Consensus 159 ~vli~Ge~GtGK~~~A~~ih~~~~~~---~~~~~~~~c~~~~-~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l 234 (463)
T TIGR01818 159 TVLINGESGTGKELVARALHRHSPRA---NGPFIALNMAAIP-KDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFL 234 (463)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCC---CCCeEEEeCCCCC-HHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEE
Confidence 48999999999999999998865322 4678888877642 22222222 10 0000 0011234678999
Q ss_pred eCCCCCCHHHHHHHHHHHHhcC-----------CCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHHHh
Q psy4285 378 DEADAMTNDAQNALRRIIEKFT-----------TNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 378 DE~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~~l 439 (533)
||++.++.+.|..|++.+++.. .++++|++|+.. ..+.+.|..|+..+.+.-|+ |
T Consensus 235 ~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPp-------L 307 (463)
T TIGR01818 235 DEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPP-------L 307 (463)
T ss_pred EchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCC-------c
Confidence 9999999999999999998532 257899998754 25667888888655555555 4
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHH
Q psy4285 440 DYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488 (533)
Q Consensus 440 ~~~~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~ 488 (533)
+..++|+..+++.+-. .+....+.....+-......+..++||++++
T Consensus 308 r~R~~Di~~l~~~~l~--~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvr 354 (463)
T TIGR01818 308 RERREDIPRLARHFLA--LAARELDVEPKLLDPEALERLKQLRWPGNVR 354 (463)
T ss_pred ccchhhHHHHHHHHHH--HHHHHhCCCCCCcCHHHHHHHHhCCCCChHH
Confidence 4445555555553211 1112223333345567788889999999887
No 293
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.87 E-value=3.1e-08 Score=89.50 Aligned_cols=141 Identities=17% Similarity=0.221 Sum_probs=98.9
Q ss_pred hhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCC
Q psy4285 291 MDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKS 370 (533)
Q Consensus 291 ~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (533)
+...+....+++.....|+|++|..|||||++++++..++... +...++++..+......+-+.++.. .
T Consensus 70 ~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~---glrLVEV~k~dl~~Lp~l~~~Lr~~--------~ 138 (287)
T COG2607 70 EALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE---GLRLVEVDKEDLATLPDLVELLRAR--------P 138 (287)
T ss_pred HHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc---CCeEEEEcHHHHhhHHHHHHHHhcC--------C
Confidence 3445556677776666679999999999999999999998655 4558888877765554444443321 2
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHH-HHH----hcCCCcEEEEEeCCCCCCCh----------------------hhhccc-
Q psy4285 371 SYKLIILDEADAMTNDAQNALRR-IIE----KFTTNVRFCIICNYLSKIPP----------------------AIQSRC- 422 (533)
Q Consensus 371 ~~~vliiDE~d~l~~~~~~~Ll~-~le----~~~~~~~~I~~~n~~~~l~~----------------------~l~sR~- 422 (533)
..-|||+|+.+.=..+.....++ +|| ..|.|+.|..|+|+...+++ ++..||
T Consensus 139 ~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFG 218 (287)
T COG2607 139 EKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFG 218 (287)
T ss_pred ceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcc
Confidence 45699999987766555555444 443 56889999999987653332 344577
Q ss_pred eeeeecCCCHHHHHHHhhcC
Q psy4285 423 TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 423 ~~i~~~~~~~~~~~~~l~~~ 442 (533)
..+.|.|.+.++...++.+.
T Consensus 219 LwL~F~~~~Q~~YL~~V~~~ 238 (287)
T COG2607 219 LWLSFYPCDQDEYLKIVDHY 238 (287)
T ss_pred eeecccCCCHHHHHHHHHHH
Confidence 47888888888888777766
No 294
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.86 E-value=3.1e-08 Score=85.53 Aligned_cols=107 Identities=27% Similarity=0.306 Sum_probs=64.8
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCc--------------------hhHHHHHHHHHHhccc
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG--------------------IGIVRDQIFQFASTKT 366 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~ 366 (533)
.+++|+||||||||++++.++..+.... ..++.++...... ....+.... ....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALA-LARK-- 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHH-HHHh--
Confidence 3689999999999999999999885432 2345555443211 112221111 1111
Q ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHH--------HHHhcCCCcEEEEEeCC-CCCCChhhhccc
Q psy4285 367 MHKSSYKLIILDEADAMTNDAQNALRR--------IIEKFTTNVRFCIICNY-LSKIPPAIQSRC 422 (533)
Q Consensus 367 ~~~~~~~vliiDE~d~l~~~~~~~Ll~--------~le~~~~~~~~I~~~n~-~~~l~~~l~sR~ 422 (533)
..+.++++||++.+.......... .......+..+|+++|. .......+..|+
T Consensus 77 ---~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 138 (148)
T smart00382 77 ---LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRF 138 (148)
T ss_pred ---cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhhcc
Confidence 125899999999998766555433 22334567888888886 333444444454
No 295
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.85 E-value=4.6e-09 Score=90.73 Aligned_cols=101 Identities=21% Similarity=0.278 Sum_probs=68.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 387 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~ 387 (533)
+++|+|+|||||+++|++++...... ...++..++.... .+.+.. .....|+|+|+|.++.+.
T Consensus 23 pvli~GE~GtGK~~~A~~lh~~~~~~---~~~~~~~~~~~~~-----~~~l~~---------a~~gtL~l~~i~~L~~~~ 85 (138)
T PF14532_consen 23 PVLITGEPGTGKSLLARALHRYSGRA---NGPFIVIDCASLP-----AELLEQ---------AKGGTLYLKNIDRLSPEA 85 (138)
T ss_dssp -EEEECCTTSSHHHHHHCCHHTTTTC---CS-CCCCCHHCTC-----HHHHHH---------CTTSEEEEECGCCS-HHH
T ss_pred cEEEEcCCCCCHHHHHHHHHhhcCcc---CCCeEEechhhCc-----HHHHHH---------cCCCEEEECChHHCCHHH
Confidence 59999999999999999998754221 2233333333221 222221 245699999999999999
Q ss_pred HHHHHHHHHhc-CCCcEEEEEeCCCC-------CCChhhhccceee
Q psy4285 388 QNALRRIIEKF-TTNVRFCIICNYLS-------KIPPAIQSRCTRF 425 (533)
Q Consensus 388 ~~~Ll~~le~~-~~~~~~I~~~n~~~-------~l~~~l~sR~~~i 425 (533)
|..|+..++.. ..++++|+++...- .+++.|..|+..+
T Consensus 86 Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~ 131 (138)
T PF14532_consen 86 QRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQL 131 (138)
T ss_dssp HHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTC
T ss_pred HHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCC
Confidence 99999999864 57789999986442 4567777777433
No 296
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=7.9e-09 Score=94.23 Aligned_cols=81 Identities=15% Similarity=0.139 Sum_probs=64.6
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
+||||++++|||+|+.+..++|||||||+.++|+.+...+..++........ .+...++-|.+...-|....+.+.+
T Consensus 113 LEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~~~e~~~~~~~p~---~~~~~l~~i~~~~~~d~~~w~~~~~ 189 (263)
T PRK06581 113 LEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHAYNELYSQFIQPI---ADNKTLDFINRFTTKDRELWLDFID 189 (263)
T ss_pred hcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHHHHHHHHHhcccc---cccHHHHHHHHHhhhhHHHHHHHHH
Confidence 6999999999999999999999999999999999999988887765433221 2344577777777777777777777
Q ss_pred HHHH
Q psy4285 81 SAAT 84 (533)
Q Consensus 81 ~~~~ 84 (533)
.+-.
T Consensus 190 ~~~~ 193 (263)
T PRK06581 190 NLLL 193 (263)
T ss_pred HHHH
Confidence 6643
No 297
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.83 E-value=1.3e-08 Score=110.12 Aligned_cols=111 Identities=21% Similarity=0.327 Sum_probs=84.1
Q ss_pred CceEEEEEc--CCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHh-------hcCCCCCHHHHHHHHHhcCCCHHHHH
Q psy4285 6 TNVRFCIIC--NYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIE-------QEKVNVTPDGKKAIIDLSDGDMRKVL 76 (533)
Q Consensus 6 ~~~~~il~~--~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~g~~r~a~ 76 (533)
+.+++|.+| |+++.++++|+|||++|+|++++.+++..+|++++. .+++.+++++++.|++.++||+|+++
T Consensus 136 g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 136 GTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLL 215 (725)
T ss_pred ceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHH
Confidence 344555544 667889999999999999999999999999999987 56788999999999999999999999
Q ss_pred HHHHHHHHhCC----C--CcchhhHHhhhhhhccccch--hHHHHHhc
Q psy4285 77 NILQSAATAHA----D--EVNEDTIFTLLVSRVEKYRP--STLDELVS 116 (533)
Q Consensus 77 ~~l~~~~~~~~----~--~i~~~~i~~~~~~~~ek~~~--~~l~~lls 116 (533)
|.|+.++.... . .||.+.+.+.++.....|+. ..+|+.+|
T Consensus 216 n~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Is 263 (725)
T PRK13341 216 NALELAVESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTIS 263 (725)
T ss_pred HHHHHHHHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHH
Confidence 99999865321 1 16666666655543333332 24555543
No 298
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.83 E-value=2.4e-08 Score=95.00 Aligned_cols=170 Identities=18% Similarity=0.192 Sum_probs=117.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHh---cccC-CCCCcEEEEEeCCCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS---TKTM-HKSSYKLIILDEADAM 383 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~vliiDE~d~l 383 (533)
.+++.|.+||||-.+|++........ ..+++.+|+...-....-.++++.... .... ..+..+.+++||+..|
T Consensus 229 PLLI~GeTGTGKdLlAkaCH~~S~R~---~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEm 305 (511)
T COG3283 229 PLLITGETGTGKDLLAKACHLASPRH---SKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEM 305 (511)
T ss_pred CeEEecCCCchHHHHHHHHhhcCccc---CCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhc
Confidence 48999999999999999887654333 578899998764333332333222110 0111 1245789999999999
Q ss_pred CHHHHHHHHHHHHhc-----------CCCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHHHhhcCHHH
Q psy4285 384 TNDAQNALRRIIEKF-----------TTNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDIS 445 (533)
Q Consensus 384 ~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~ 445 (533)
++..|..|++.+... .-++++|++|... .++-+.+.-|+.++.+.-|+ |+..+.|
T Consensus 306 Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~Pp-------LRer~~d 378 (511)
T COG3283 306 SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPP-------LRERPQD 378 (511)
T ss_pred CHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCc-------cccCccc
Confidence 999999999999642 4568999998543 35667777888888888887 4444445
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHHH
Q psy4285 446 FFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLV 489 (533)
Q Consensus 446 ~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~~ 489 (533)
+..+.+.+ +.+.....|.+...+...+...+..+.||++++.
T Consensus 379 i~pL~e~F--v~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRq 420 (511)
T COG3283 379 IMPLAELF--VQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQ 420 (511)
T ss_pred chHHHHHH--HHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHH
Confidence 44444431 2233345577777777888888999999999873
No 299
>KOG2227|consensus
Probab=98.82 E-value=6.9e-08 Score=95.36 Aligned_cols=228 Identities=17% Similarity=0.188 Sum_probs=133.5
Q ss_pred cccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHH-HHHHHHH---------------
Q psy4285 298 NRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIV-RDQIFQF--------------- 361 (533)
Q Consensus 298 ~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------- 361 (533)
...+.....+.+.+.|-||||||.+...+...+.+.. .....+.+|+........+ ......+
T Consensus 167 ~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~-~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~ 245 (529)
T KOG2227|consen 167 SLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSS-KSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLE 245 (529)
T ss_pred HhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhc-ccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 3344444555699999999999999988877765443 1224467777653332222 1111111
Q ss_pred --HhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCcEEEEEeCCCC---CCChhhhccc----eeeeecC
Q psy4285 362 --ASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEK---FTTNVRFCIICNYLS---KIPPAIQSRC----TRFRFGP 429 (533)
Q Consensus 362 --~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~---~~~~~~~I~~~n~~~---~l~~~l~sR~----~~i~~~~ 429 (533)
...... ....-++++||+|.+....+..|+.+.+. +...+.+|.+.|..+ ++.|.|..|+ ..+.|+|
T Consensus 246 ~~~~h~~q-~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~P 324 (529)
T KOG2227|consen 246 KFEKHTKQ-SKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPP 324 (529)
T ss_pred HHHHHHhc-ccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecC
Confidence 111110 12366999999999988777777777664 234445555557554 6778888866 5899999
Q ss_pred CCHHHHHHHhhcC------------------------HHHHHHHHHHHHHHHHHHHh-------c----CCCHHHH----
Q psy4285 430 LDSSLIMSRLDYD------------------------DISFFNIIIWYIKIQEIKIE-------K----GLALTDI---- 470 (533)
Q Consensus 430 ~~~~~~~~~l~~~------------------------~~~~~~ll~~~~~l~~l~~~-------~----~~~~~di---- 470 (533)
|+.+++.+++... .+|++..++......++... . |-++..-
T Consensus 325 YTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~ 404 (529)
T KOG2227|consen 325 YTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVG 404 (529)
T ss_pred CCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccc
Confidence 9999999999887 46666666652222221111 0 1111111
Q ss_pred HHHHHHHHHhcCCChhHHHHH-----HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhHhc
Q psy4285 471 LTEISLLVHRLEIPESMLVDL-----VLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLE 527 (533)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~g~~~~~~l~~~~~~~~~~~~~~~ 527 (533)
+.++..++.+..-.+..+... -+.+-..-..+.+|.+..+.++.+.-+-..+|....
T Consensus 405 ~~~va~viSk~~~s~~~~s~~slplqqkiilctl~~l~r~~kkd~s~~eL~e~Y~k~C~~~~ 466 (529)
T KOG2227|consen 405 VEHVAAVISKVDGSPSARSRESLPLQQKIILCTLVLLIRGNKKDVSIAELYEAYLKACQKRE 466 (529)
T ss_pred hHHHHHHhhhhccChhhhhhhhcCcccchhHHHHHHHHhcccccccHHHHHHHHHHHHHhcc
Confidence 444444444443333322221 123334455666777777788887777777776544
No 300
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.82 E-value=7.5e-08 Score=102.82 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=45.2
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhc---------------------CCCcEEEEEeCCC--CCCChhhhccce
Q psy4285 370 SSYKLIILDEADAMTNDAQNALRRIIEKF---------------------TTNVRFCIICNYL--SKIPPAIQSRCT 423 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~~~~~Ll~~le~~---------------------~~~~~~I~~~n~~--~~l~~~l~sR~~ 423 (533)
+..++|+|||++.|+...|..|++.|++. +.++++|+++|.. ..++|++++||.
T Consensus 216 AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~ 292 (608)
T TIGR00764 216 AHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIR 292 (608)
T ss_pred CCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhc
Confidence 44689999999999999999999999742 2357889999864 579999999997
No 301
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.80 E-value=1.3e-07 Score=91.83 Aligned_cols=131 Identities=19% Similarity=0.260 Sum_probs=74.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC-----------------Cch--hHHHHHHHHHHhcccCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD-----------------RGI--GIVRDQIFQFASTKTMH 368 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-----------------~~~--~~~~~~~~~~~~~~~~~ 368 (533)
.++++||+|+||||+++.+++.+.... .....+..+.. .+. ......+..+..... .
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~---~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~-~ 120 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQER---VVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF-A 120 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCC---eEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH-h
Confidence 489999999999999999998874321 11111111000 000 001111111111100 1
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEeCCC------CCCChhhhccc-eeeeecCCCHHHHHHH
Q psy4285 369 KSSYKLIILDEADAMTNDAQNALRRIIEKF---TTNVRFCIICNYL------SKIPPAIQSRC-TRFRFGPLDSSLIMSR 438 (533)
Q Consensus 369 ~~~~~vliiDE~d~l~~~~~~~Ll~~le~~---~~~~~~I~~~n~~------~~l~~~l~sR~-~~i~~~~~~~~~~~~~ 438 (533)
.+...+++|||++.++.+..+.|..+.+.. ...+.+++++... ..-...+.+|+ ..+.+.+++.+++.+.
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~ 200 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREY 200 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHH
Confidence 235679999999999988777665544321 2234556666432 11133577775 5788999999988887
Q ss_pred hhcC
Q psy4285 439 LDYD 442 (533)
Q Consensus 439 l~~~ 442 (533)
+.+.
T Consensus 201 l~~~ 204 (269)
T TIGR03015 201 IEHR 204 (269)
T ss_pred HHHH
Confidence 7654
No 302
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.80 E-value=3e-07 Score=90.51 Aligned_cols=157 Identities=13% Similarity=0.045 Sum_probs=95.3
Q ss_pred HhhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHcccccc---------Ccc-----------------
Q psy4285 286 LLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQF---------NAM----------------- 339 (533)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~---------~~~----------------- 339 (533)
...|++.....|.--.-......+|+.|+.||||||++|+++..|-.-... ..+
T Consensus 18 aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~ 97 (423)
T COG1239 18 AIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWL 97 (423)
T ss_pred hhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccc
Confidence 345666655544333344455569999999999999999999876211000 000
Q ss_pred ------eEEecCCCCCchh------HHHHHHHHH---HhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc------
Q psy4285 340 ------VLELNASDDRGIG------IVRDQIFQF---ASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF------ 398 (533)
Q Consensus 340 ------~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~------ 398 (533)
+-.++.+.+...+ .+...++.- .+......++.+|++|||+..++...++.|+..+++.
T Consensus 98 ~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~ver 177 (423)
T COG1239 98 PREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVER 177 (423)
T ss_pred cccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCceeee
Confidence 0011111111111 111111110 0001111356889999999999999999999999863
Q ss_pred -------CCCcEEEEEeCCCC-CCChhhhccc-eeeeecC-CCHHHHHHHhhcC
Q psy4285 399 -------TTNVRFCIICNYLS-KIPPAIQSRC-TRFRFGP-LDSSLIMSRLDYD 442 (533)
Q Consensus 399 -------~~~~~~I~~~n~~~-~l~~~l~sR~-~~i~~~~-~~~~~~~~~l~~~ 442 (533)
+.++.+|.|+|... .|-|.|++|| ..+...+ .+.++..+++.+.
T Consensus 178 eGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~ 231 (423)
T COG1239 178 EGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRR 231 (423)
T ss_pred CceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHH
Confidence 56677888888765 7999999999 3555544 4555556666555
No 303
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.76 E-value=3.3e-08 Score=102.63 Aligned_cols=147 Identities=17% Similarity=0.134 Sum_probs=90.8
Q ss_pred hhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCC-C---------Cchh----
Q psy4285 287 LNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD-D---------RGIG---- 352 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-~---------~~~~---- 352 (533)
..|+....+.+...+..+ .+++|.||||||||++++.++..+-... +.-.++..... . ....
T Consensus 194 v~Gq~~~~~al~~aa~~g--~~vlliG~pGsGKTtlar~l~~llp~~~--~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~ 269 (499)
T TIGR00368 194 IKGQQHAKRALEIAAAGG--HNLLLFGPPGSGKTMLASRLQGILPPLT--NEEAIETARIWSLVGKLIDRKQIKQRPFRS 269 (499)
T ss_pred hcCcHHHHhhhhhhccCC--CEEEEEecCCCCHHHHHHHHhcccCCCC--CcEEEeccccccchhhhccccccccCCccc
Confidence 356666666666655544 3699999999999999999987542111 11111111100 0 0000
Q ss_pred -----HHHHHHHHH--HhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-------------CCCcEEEEEeCCC-
Q psy4285 353 -----IVRDQIFQF--ASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF-------------TTNVRFCIICNYL- 411 (533)
Q Consensus 353 -----~~~~~~~~~--~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~n~~- 411 (533)
.....++.- .+......+...+|||||++.++...++.|++.||.. +.++++|+++|.-
T Consensus 270 p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcp 349 (499)
T TIGR00368 270 PHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCP 349 (499)
T ss_pred cccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcc
Confidence 000000000 0000001245689999999999999999999999853 3578899999852
Q ss_pred ----------------------CCCChhhhccce-eeeecCCCHHHHHH
Q psy4285 412 ----------------------SKIPPAIQSRCT-RFRFGPLDSSLIMS 437 (533)
Q Consensus 412 ----------------------~~l~~~l~sR~~-~i~~~~~~~~~~~~ 437 (533)
.++..+|++||+ .+.+.+++.+++.+
T Consensus 350 cg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~ 398 (499)
T TIGR00368 350 CGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLS 398 (499)
T ss_pred cCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhc
Confidence 158899999996 67778787766543
No 304
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.5e-07 Score=100.45 Aligned_cols=147 Identities=14% Similarity=0.181 Sum_probs=102.7
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccc----cCcceEEecCC------CCCc--hhHHH
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ----FNAMVLELNAS------DDRG--IGIVR 355 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~----~~~~~~~~~~~------~~~~--~~~~~ 355 (533)
.|.++-+.+..+.+.+....|-++.|+||+|||.++..+|..+..... .+..++.++.+ ..++ ...++
T Consensus 173 IGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk 252 (786)
T COG0542 173 IGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLK 252 (786)
T ss_pred cChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHH
Confidence 344444455555666666677899999999999999999999865432 13344555432 2222 33444
Q ss_pred HHHHHHHhcccCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHHHhcCCCcEEEEEeCC-----CCCCChhhhcc
Q psy4285 356 DQIFQFASTKTMHKSSYKLIILDEADAMT---------NDAQNALRRIIEKFTTNVRFCIICNY-----LSKIPPAIQSR 421 (533)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~vliiDE~d~l~---------~~~~~~Ll~~le~~~~~~~~I~~~n~-----~~~l~~~l~sR 421 (533)
..++.... .++-||||||++.+- .++.|.|...|.. ...++|.+|.. .-.-|++|-+|
T Consensus 253 ~vl~ev~~------~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--GeL~~IGATT~~EYRk~iEKD~AL~RR 324 (786)
T COG0542 253 AVLKEVEK------SKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GELRCIGATTLDEYRKYIEKDAALERR 324 (786)
T ss_pred HHHHHHhc------CCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc--CCeEEEEeccHHHHHHHhhhchHHHhc
Confidence 44444332 236799999999882 3466777777764 44788888853 33579999999
Q ss_pred ceeeeecCCCHHHHHHHhhcC
Q psy4285 422 CTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 422 ~~~i~~~~~~~~~~~~~l~~~ 442 (533)
|+.+....|+.++...+|+-+
T Consensus 325 FQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 325 FQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred CceeeCCCCCHHHHHHHHHHH
Confidence 999999999999999999988
No 305
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.71 E-value=2.5e-07 Score=86.46 Aligned_cols=121 Identities=24% Similarity=0.278 Sum_probs=85.3
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 388 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~ 388 (533)
-.++||+|||||++++.+|+.+ +..++.+++++......+.+.+...++. +.-+++||+++++.+..
T Consensus 35 ~~~~GpagtGKtetik~La~~l------G~~~~vfnc~~~~~~~~l~ril~G~~~~-------GaW~cfdefnrl~~~vL 101 (231)
T PF12774_consen 35 GALSGPAGTGKTETIKDLARAL------GRFVVVFNCSEQMDYQSLSRILKGLAQS-------GAWLCFDEFNRLSEEVL 101 (231)
T ss_dssp EEEESSTTSSHHHHHHHHHHCT------T--EEEEETTSSS-HHHHHHHHHHHHHH-------T-EEEEETCCCSSHHHH
T ss_pred CCCcCCCCCCchhHHHHHHHHh------CCeEEEecccccccHHHHHHHHHHHhhc-------CchhhhhhhhhhhHHHH
Confidence 4689999999999999999998 8899999999988888888888777654 34899999999998776
Q ss_pred HHHHHHHHh-------c-------------CCCcEEEEEeCC----CCCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 389 NALRRIIEK-------F-------------TTNVRFCIICNY----LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 389 ~~Ll~~le~-------~-------------~~~~~~I~~~n~----~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
..+-+.+.. . .+++.+.+|.|. ...+++.+++-|..+.+..|+-..+.+++...
T Consensus 102 S~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~PD~~~I~ei~L~s 179 (231)
T PF12774_consen 102 SVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMMVPDLSLIAEILLLS 179 (231)
T ss_dssp HHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S--HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEeCCCHHHHHHHHHHH
Confidence 655444321 1 245667777773 34789999999999999999977777666544
No 306
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.70 E-value=3.3e-08 Score=106.91 Aligned_cols=129 Identities=14% Similarity=0.137 Sum_probs=79.0
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccc-cCcceEEecCCCCCchhHHHHH-HHHHHhcc-cCCCCCcEEEEEeCCCCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQ-FNAMVLELNASDDRGIGIVRDQ-IFQFASTK-TMHKSSYKLIILDEADAM 383 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~vliiDE~d~l 383 (533)
.|+||.|+||||||.+|+++++....... .+..+..+..... ...... .+.+.... ....+..++++|||++.|
T Consensus 493 ihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~---~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkm 569 (915)
T PTZ00111 493 INVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTAS---IKFNESDNGRAMIQPGAVVLANGGVCCIDELDKC 569 (915)
T ss_pred ceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccch---hhhcccccCcccccCCcEEEcCCCeEEecchhhC
Confidence 37999999999999999999985421110 0112222111110 000000 00110000 111245689999999999
Q ss_pred CHHHHHHHHHHHHhc-------------CCCcEEEEEeCCCC-------------CCChhhhccceee--eecCCCHHHH
Q psy4285 384 TNDAQNALRRIIEKF-------------TTNVRFCIICNYLS-------------KIPPAIQSRCTRF--RFGPLDSSLI 435 (533)
Q Consensus 384 ~~~~~~~Ll~~le~~-------------~~~~~~I~~~n~~~-------------~l~~~l~sR~~~i--~~~~~~~~~~ 435 (533)
+...+.+|+++||+. +..+++|+++|+.. .++++|+|||+.+ ..+.++.+.-
T Consensus 570 s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D 649 (915)
T PTZ00111 570 HNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTD 649 (915)
T ss_pred CHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHH
Confidence 999999999999864 25788999998742 5889999999644 3345554443
Q ss_pred HHH
Q psy4285 436 MSR 438 (533)
Q Consensus 436 ~~~ 438 (533)
..+
T Consensus 650 ~~l 652 (915)
T PTZ00111 650 QLI 652 (915)
T ss_pred HHH
Confidence 333
No 307
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.4e-07 Score=87.70 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=55.6
Q ss_pred CcEEEEEeCCCCCCH------------HHHHHHHHHHHhc----------CCCcEEEEEe----CCCCCCChhhhccc-e
Q psy4285 371 SYKLIILDEADAMTN------------DAQNALRRIIEKF----------TTNVRFCIIC----NYLSKIPPAIQSRC-T 423 (533)
Q Consensus 371 ~~~vliiDE~d~l~~------------~~~~~Ll~~le~~----------~~~~~~I~~~----n~~~~l~~~l~sR~-~ 423 (533)
..+++||||+|++.. ..|.-|+-++|.. ..++.||.++ ..|+.|.|.|..|| -
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 357999999999843 2356688887731 2445566665 56789999999999 5
Q ss_pred eeeecCCCHHHHHHHhhcC
Q psy4285 424 RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 424 ~i~~~~~~~~~~~~~l~~~ 442 (533)
.+.+.+++.++...+|..-
T Consensus 330 RVEL~~Lt~~Df~rILtep 348 (444)
T COG1220 330 RVELDALTKEDFERILTEP 348 (444)
T ss_pred EEEcccCCHHHHHHHHcCc
Confidence 8999999999999888776
No 308
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.68 E-value=2.8e-07 Score=96.27 Aligned_cols=175 Identities=15% Similarity=0.149 Sum_probs=108.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHh----------cccCCCCCcEEEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS----------TKTMHKSSYKLIIL 377 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~vlii 377 (533)
.++++|.+||||+++|+++....... ..+++.+++.... ...+...+..... ......+.+++|||
T Consensus 164 ~vli~ge~g~gk~~~a~~ih~~s~~~---~~~~i~~~c~~~~-~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l 239 (441)
T PRK10365 164 TVLIHGDSGTGKELVARAIHASSARS---EKPLVTLNCAALN-ESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 (441)
T ss_pred eEEEEecCCCCHHHHHHHHHHcCCCC---CCCeeeeeCCCCC-HHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEE
Confidence 48999999999999999998765322 4678888887643 2333332211000 00011245789999
Q ss_pred eCCCCCCHHHHHHHHHHHHhcC-----------CCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHHHh
Q psy4285 378 DEADAMTNDAQNALRRIIEKFT-----------TNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 378 DE~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~~l 439 (533)
||++.|+...|..|++.+++.. .++++|++|+.. ..+.+.+..|+..+.+.-|+ |
T Consensus 240 dei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~pp-------L 312 (441)
T PRK10365 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPS-------L 312 (441)
T ss_pred eccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCC-------h
Confidence 9999999999999999998632 256788888654 24566677777767776666 3
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q psy4285 440 DYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMS 496 (533)
Q Consensus 440 ~~~~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (533)
+..++|+..+++.+- .++....+.....+.......+..+.||++++ ++.+.+.
T Consensus 313 reR~~Di~~l~~~~l--~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~r-eL~~~~~ 366 (441)
T PRK10365 313 RQRREDIPLLAGHFL--QRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR-ELENAVE 366 (441)
T ss_pred hhcchhHHHHHHHHH--HHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHH-HHHHHHH
Confidence 333344444444321 11111222222234456777788899999987 3333333
No 309
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.66 E-value=7.5e-07 Score=84.86 Aligned_cols=156 Identities=16% Similarity=0.233 Sum_probs=89.7
Q ss_pred ccCCCCHHHHHHHHHHHhhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccc---cCcceEEecCC
Q psy4285 270 SVGYPTKTEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ---FNAMVLELNAS 346 (533)
Q Consensus 270 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~---~~~~~~~~~~~ 346 (533)
+++|+.-..+-+.+..+. ..-...+.|+++++|++|.|||++++.+.+.--.... ...+++.+..+
T Consensus 36 WIgY~~A~~~L~~L~~Ll-----------~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P 104 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELL-----------EYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMP 104 (302)
T ss_pred eecCHHHHHHHHHHHHHH-----------hCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecC
Confidence 456665555555444433 2334567889999999999999999999976422111 12345555544
Q ss_pred CCCchhHHHHH-HHHHHhcc---------------cCCCCCcEEEEEeCCCCCC---HHHHHHHHHHHHhc--CCCcEEE
Q psy4285 347 DDRGIGIVRDQ-IFQFASTK---------------TMHKSSYKLIILDEADAMT---NDAQNALRRIIEKF--TTNVRFC 405 (533)
Q Consensus 347 ~~~~~~~~~~~-~~~~~~~~---------------~~~~~~~~vliiDE~d~l~---~~~~~~Ll~~le~~--~~~~~~I 405 (533)
..-+...+... +..+.... ....-+.++|||||++.+. ...|..++.++... .-.+.+|
T Consensus 105 ~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV 184 (302)
T PF05621_consen 105 PEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIV 184 (302)
T ss_pred CCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeE
Confidence 32222221111 11110000 0001356899999999862 34455555555432 2235566
Q ss_pred EEeCC----CCCCChhhhccceeeeecCCCHHHHH
Q psy4285 406 IICNY----LSKIPPAIQSRCTRFRFGPLDSSLIM 436 (533)
Q Consensus 406 ~~~n~----~~~l~~~l~sR~~~i~~~~~~~~~~~ 436 (533)
+++.. .-.-|+.+.+||..+.++++..++-.
T Consensus 185 ~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef 219 (302)
T PF05621_consen 185 GVGTREAYRALRTDPQLASRFEPFELPRWELDEEF 219 (302)
T ss_pred EeccHHHHHHhccCHHHHhccCCccCCCCCCCcHH
Confidence 66632 23568999999999988887755433
No 310
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.65 E-value=4.7e-07 Score=96.39 Aligned_cols=46 Identities=24% Similarity=0.313 Sum_probs=38.3
Q ss_pred HhhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccc
Q psy4285 286 LLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTK 333 (533)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~ 333 (533)
-..+|++....+...+..+. +++|+||||||||++++++++.+.+.
T Consensus 32 ~vigq~~a~~~L~~~~~~~~--~~l~~G~~G~GKttla~~l~~~l~~~ 77 (637)
T PRK13765 32 QVIGQEHAVEVIKKAAKQRR--HVMMIGSPGTGKSMLAKAMAELLPKE 77 (637)
T ss_pred HcCChHHHHHHHHHHHHhCC--eEEEECCCCCcHHHHHHHHHHHcChH
Confidence 35678888888888777664 89999999999999999999887544
No 311
>KOG0745|consensus
Probab=98.65 E-value=9.8e-08 Score=93.14 Aligned_cols=85 Identities=27% Similarity=0.390 Sum_probs=60.0
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchh----HHHHHHHHHHhcccC--CCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIG----IVRDQIFQFASTKTM--HKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~vliiDE~ 380 (533)
.|+|+.||+|+|||.+|+.+|+.+ +.++.-.++.+..... .+...+..+...... ..+...|+||||+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l------dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEv 300 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL------DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEV 300 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh------CCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehh
Confidence 579999999999999999999998 7777777776644322 222223332222111 1245689999999
Q ss_pred CCCCH--------------HHHHHHHHHHHh
Q psy4285 381 DAMTN--------------DAQNALRRIIEK 397 (533)
Q Consensus 381 d~l~~--------------~~~~~Ll~~le~ 397 (533)
|++.. ..|.+||+++|.
T Consensus 301 DKi~~~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 301 DKITKKAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred hhhcccCccccccccccchhHHHHHHHHhcc
Confidence 99962 468999999983
No 312
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.63 E-value=2.5e-07 Score=87.42 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=79.0
Q ss_pred CceEEEEEcC-CCCc---Cchhhhccc---eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHH
Q psy4285 6 TNVRFCIICN-YLSK---ITPAIQSRC---TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNI 78 (533)
Q Consensus 6 ~~~~~il~~~-~~~~---i~~~i~SRc---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~ 78 (533)
+++.+|++++ ++.. ++|.|+||| .++.+++|++++..++|++.+...++.++++.++.|++.+.||+|.+++.
T Consensus 130 g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 130 GRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred CCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 4556777775 4444 689999999 99999999999999999997888899999999999999999999999999
Q ss_pred HHHHHHh---CCCCcchhhHHhhh
Q psy4285 79 LQSAATA---HADEVNEDTIFTLL 99 (533)
Q Consensus 79 l~~~~~~---~~~~i~~~~i~~~~ 99 (533)
|+.+... ...+||.+.+++++
T Consensus 210 l~~l~~~~l~~~~~it~~~~k~~l 233 (235)
T PRK08084 210 LDQLDRASITAQRKLTIPFVKEIL 233 (235)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHH
Confidence 9997422 34568888876654
No 313
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.63 E-value=1.2e-07 Score=92.54 Aligned_cols=95 Identities=21% Similarity=0.250 Sum_probs=60.1
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC-------chhHHHHHHHHHHhcccCCCCCcEEEEEeC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR-------GIGIVRDQIFQFASTKTMHKSSYKLIILDE 379 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE 379 (533)
.+++|+||||||||+++.++|+++... +..+..+..++.. ......+.+..+ ...++|||||
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~---g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--------~~~dlLiIDD 225 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKK---GVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--------KEAPVLMLDD 225 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--------cCCCEEEEec
Confidence 469999999999999999999998643 3333333322210 000111112211 3568999999
Q ss_pred CCC--CCHHHHHHHHH-HHHhc-CCCcEEEEEeCCCC
Q psy4285 380 ADA--MTNDAQNALRR-IIEKF-TTNVRFCIICNYLS 412 (533)
Q Consensus 380 ~d~--l~~~~~~~Ll~-~le~~-~~~~~~I~~~n~~~ 412 (533)
++. ++.+....++. +++.. ......|+|||.+.
T Consensus 226 iG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~ 262 (306)
T PRK08939 226 IGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDF 262 (306)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCH
Confidence 975 45666655554 55644 46788999999764
No 314
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.61 E-value=1.2e-07 Score=97.97 Aligned_cols=144 Identities=17% Similarity=0.157 Sum_probs=87.0
Q ss_pred hchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEec------CCC----------CCch-
Q psy4285 289 ESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELN------ASD----------DRGI- 351 (533)
Q Consensus 289 ~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~------~~~----------~~~~- 351 (533)
|+..+.+.+.-.+..+ .++++.||||+|||++++.++..+-... +.-.++.. +.. .+..
T Consensus 195 Gq~~~~~al~laa~~G--~~llliG~~GsGKTtLak~L~gllpp~~--g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph 270 (506)
T PRK09862 195 GQEQGKRGLEITAAGG--HNLLLIGPPGTGKTMLASRINGLLPDLS--NEEALESAAILSLVNAESVQKQWRQRPFRSPH 270 (506)
T ss_pred CcHHHHhhhheeccCC--cEEEEECCCCCcHHHHHHHHhccCCCCC--CcEEEecchhhhhhccccccCCcCCCCccCCC
Confidence 4444555554444433 3699999999999999999987652111 11111111 000 0000
Q ss_pred --hHHHHHHHHH--HhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-------------CCCcEEEEEeCCCC--
Q psy4285 352 --GIVRDQIFQF--ASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF-------------TTNVRFCIICNYLS-- 412 (533)
Q Consensus 352 --~~~~~~~~~~--~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~n~~~-- 412 (533)
-....+++.- ........+...+||+||++.+....++.|++.||+. +.++++|.++|...
T Consensus 271 ~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG 350 (506)
T PRK09862 271 HSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTG 350 (506)
T ss_pred ccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccce
Confidence 0011111100 0000001245789999999999999999999999752 45688999998652
Q ss_pred -------------------CCChhhhccce-eeeecCCCHHHHH
Q psy4285 413 -------------------KIPPAIQSRCT-RFRFGPLDSSLIM 436 (533)
Q Consensus 413 -------------------~l~~~l~sR~~-~i~~~~~~~~~~~ 436 (533)
++..++++||+ .+.+.+++.+++.
T Consensus 351 ~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~ 394 (506)
T PRK09862 351 HYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILS 394 (506)
T ss_pred ecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHh
Confidence 47889999996 5777777766443
No 315
>KOG2680|consensus
Probab=98.60 E-value=1.8e-06 Score=80.45 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=59.6
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCC------------CCCCChhhhccceeeeecCCCHHHHHHHh
Q psy4285 372 YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY------------LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 372 ~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~------------~~~l~~~l~sR~~~i~~~~~~~~~~~~~l 439 (533)
++||||||+++++-+....|.+.+|.-- ...+|++||+ +..++-.+++|...+.-.|++.+++.++|
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~-~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL 367 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALENDM-APIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKIL 367 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhcc-CcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHH
Confidence 7899999999999999999999998633 2456666653 44688899999999999999999999999
Q ss_pred hcC
Q psy4285 440 DYD 442 (533)
Q Consensus 440 ~~~ 442 (533)
...
T Consensus 368 ~iR 370 (454)
T KOG2680|consen 368 RIR 370 (454)
T ss_pred Hhh
Confidence 887
No 316
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=98.59 E-value=8.1e-07 Score=70.21 Aligned_cols=86 Identities=31% Similarity=0.464 Sum_probs=65.0
Q ss_pred CCHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhCCCCh
Q psy4285 430 LDSSLIMSRLDYD-DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSE 508 (533)
Q Consensus 430 ~~~~~~~~~l~~~-~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 508 (533)
|+++.+.+++... .. .+-+.+..+.++... |+++.+++..+++.+...++++..+.+++..++++++||..|+++
T Consensus 3 p~~~~i~~i~~~~~~~---~~~~~~~~~~~l~~~-G~s~~~Il~~l~~~l~~~~~~~~~k~~i~~~la~~e~rl~~G~~e 78 (89)
T PF08542_consen 3 PPPEVIEEILESCLNG---DFKEARKKLYELLVE-GYSASDILKQLHEVLVESDIPDSQKAEILKILAEIEYRLSDGASE 78 (89)
T ss_dssp --HHHHHHHHHHHHHT---CHHHHHHHHHHHHHT-T--HHHHHHHHHHHHHTSTSSHHHHHHHHHHHHHHHHHHHTTC-H
T ss_pred CCHHHHHHHHHHHHhC---CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhHHHHCCCCH
Confidence 4455555555554 11 122225566677555 999999999999999998999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy4285 509 KIQLSALIAAF 519 (533)
Q Consensus 509 ~~~l~~~~~~~ 519 (533)
.+|+++|++++
T Consensus 79 ~lQl~alva~~ 89 (89)
T PF08542_consen 79 ILQLEALVAAF 89 (89)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhC
Confidence 99999999985
No 317
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.58 E-value=1.6e-07 Score=99.82 Aligned_cols=100 Identities=18% Similarity=0.231 Sum_probs=68.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHH------------------------HHh
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ------------------------FAS 363 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~ 363 (533)
..+++|+|||||||+++.+...+..........+.+.+++++....+.+.+.. +..
T Consensus 169 ~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlLg 248 (615)
T PRK10875 169 ISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLLG 248 (615)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHhC
Confidence 48999999999999999998876432111223456666666655555543321 111
Q ss_pred cccC---------CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 364 TKTM---------HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 364 ~~~~---------~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
..+. .+...+++||||++|++......|++.+ ++++++|++++.
T Consensus 249 ~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al---~~~~rlIlvGD~ 301 (615)
T PRK10875 249 AQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDAL---PPHARVIFLGDR 301 (615)
T ss_pred cCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhc---ccCCEEEEecch
Confidence 1100 1123589999999999999999999988 678999999964
No 318
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.58 E-value=1.3e-07 Score=80.83 Aligned_cols=101 Identities=25% Similarity=0.434 Sum_probs=58.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHcccccc--CcceEEecCCCCCchh-HHHHHHHHHHhcccC---------------CC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQF--NAMVLELNASDDRGIG-IVRDQIFQFASTKTM---------------HK 369 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~ 369 (533)
+++++||||+|||++++.+++.+...... ...++.++.+...... ........+...... ..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 58999999999999999999987431100 2233344332222211 111111111111000 01
Q ss_pred CCcEEEEEeCCCCC-CHHHHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 370 SSYKLIILDEADAM-TNDAQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 370 ~~~~vliiDE~d~l-~~~~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
....+|+|||+|.+ .....+.|..+++ ..++.+|++++.
T Consensus 86 ~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 86 RRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp CTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred cCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 12369999999999 8777777877776 567889998875
No 319
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.57 E-value=7.5e-07 Score=87.45 Aligned_cols=62 Identities=10% Similarity=-0.068 Sum_probs=49.5
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCC-------CCCChhhhccceeeeecCCC
Q psy4285 370 SSYKLIILDEADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLD 431 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~ 431 (533)
++.+++-|+|+.+...+.++.|+.++++. +-+..||+++|.. .+..+++++||..+.++.+.
T Consensus 235 aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l 314 (361)
T smart00763 235 ANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYCL 314 (361)
T ss_pred ccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCcC
Confidence 45689999999999999999999999863 1234567777766 36789999999988887654
No 320
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.56 E-value=4.2e-07 Score=87.42 Aligned_cols=138 Identities=17% Similarity=0.225 Sum_probs=80.1
Q ss_pred cccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhccc-----CCCCCcEE
Q psy4285 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKT-----MHKSSYKL 374 (533)
Q Consensus 300 ~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v 374 (533)
++..++ +++|+||+|||||++++.+.+.+... ......++.+.......+.+.+........ ...++..|
T Consensus 29 l~~~~~--pvLl~G~~GtGKT~li~~~l~~l~~~---~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv 103 (272)
T PF12775_consen 29 LLSNGR--PVLLVGPSGTGKTSLIQNFLSSLDSD---KYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLV 103 (272)
T ss_dssp HHHCTE--EEEEESSTTSSHHHHHHHHHHCSTTC---CEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEE
T ss_pred HHHcCC--cEEEECCCCCchhHHHHhhhccCCcc---ccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEE
Confidence 344443 69999999999999999887654221 222334444443333333333221111100 01245679
Q ss_pred EEEeCCCCCCHH------HHHHHHHHHHhc------------CCCcEEEEEeCCCC---CCChhhhccceeeeecCCCHH
Q psy4285 375 IILDEADAMTND------AQNALRRIIEKF------------TTNVRFCIICNYLS---KIPPAIQSRCTRFRFGPLDSS 433 (533)
Q Consensus 375 liiDE~d~l~~~------~~~~Ll~~le~~------------~~~~~~I~~~n~~~---~l~~~l~sR~~~i~~~~~~~~ 433 (533)
++|||+.+-..+ ..+.|.++++.. -.++.+|.+++... .+++.+.|.|..+.+.+|+.+
T Consensus 104 ~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~~~p~~~ 183 (272)
T PF12775_consen 104 LFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILNIPYPSDE 183 (272)
T ss_dssp EEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE----TCC
T ss_pred EEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEEecCCChH
Confidence 999999876543 345566667631 14577888887543 477888888899999999999
Q ss_pred HHHHHhhcC
Q psy4285 434 LIMSRLDYD 442 (533)
Q Consensus 434 ~~~~~l~~~ 442 (533)
.+..+...+
T Consensus 184 sl~~If~~i 192 (272)
T PF12775_consen 184 SLNTIFSSI 192 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777665
No 321
>KOG2170|consensus
Probab=98.55 E-value=2.7e-07 Score=86.29 Aligned_cols=134 Identities=17% Similarity=0.194 Sum_probs=86.1
Q ss_pred HHHHHHHHhhhc----hhhhhhhcccccccCCCc---eeEeCCCCCChHHHHHHHHHHHccccccCcce----EEecCCC
Q psy4285 279 ITNILRWLLNES----MDLCYKINRFIDENELPH---LLFYGPPGTGKTTTILACARKLYTKAQFNAMV----LELNASD 347 (533)
Q Consensus 279 ~~~~l~~~~~~~----~~~~~~l~~~~~~~~~~~---~ll~GppGtGKT~la~~la~~l~~~~~~~~~~----~~~~~~~ 347 (533)
+...+...+.|| +.++..++.++.+..+.. +-|+|+|||||..+++.||+.++..+.....+ -....+.
T Consensus 76 Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~ 155 (344)
T KOG2170|consen 76 LEKDLARALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPH 155 (344)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCC
Confidence 333444444555 445566677776665322 56999999999999999999987654222211 1223344
Q ss_pred CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-------CCcEEEEEeCCCCC
Q psy4285 348 DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFT-------TNVRFCIICNYLSK 413 (533)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~-------~~~~~I~~~n~~~~ 413 (533)
....+..+..++........ .-...++|+||+|+|.+...+.|--.++.++ .+..||+.+|.-..
T Consensus 156 ~~~ie~Yk~eL~~~v~~~v~-~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~ 227 (344)
T KOG2170|consen 156 ASKIEDYKEELKNRVRGTVQ-ACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGS 227 (344)
T ss_pred hHHHHHHHHHHHHHHHHHHH-hcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcch
Confidence 44555555544443222111 1346799999999999999999998888542 45778999987653
No 322
>KOG0736|consensus
Probab=98.54 E-value=5.1e-07 Score=94.17 Aligned_cols=127 Identities=21% Similarity=0.342 Sum_probs=87.5
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCc--hhHHHHHHH-HHHhcccCCCCCcEEEEEeCCCCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG--IGIVRDQIF-QFASTKTMHKSSYKLIILDEADAM 383 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~vliiDE~d~l 383 (533)
+.+|++|+||||||++++++|.++ +..++++++.+... .+.....+. .|..... ..+.||++-.+|-+
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~l------g~h~~evdc~el~~~s~~~~etkl~~~f~~a~~---~~pavifl~~~dvl 502 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASEL------GLHLLEVDCYELVAESASHTETKLQAIFSRARR---CSPAVLFLRNLDVL 502 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHh------CCceEeccHHHHhhcccchhHHHHHHHHHHHhh---cCceEEEEecccee
Confidence 348999999999999999999998 77777777654321 111111111 2222221 35678888888776
Q ss_pred CH--------HHHHHHHHHHH--h---cCCCcEEEEEeCCCCCCChhhhccc-eeeeecCCCHHHHHHHhhcC
Q psy4285 384 TN--------DAQNALRRIIE--K---FTTNVRFCIICNYLSKIPPAIQSRC-TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 384 ~~--------~~~~~Ll~~le--~---~~~~~~~I~~~n~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~ 442 (533)
.. ..+..+...+. . ....+.+|.+++..+.+++.+++-| ..+.++.++++|..++|+..
T Consensus 503 ~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y 575 (953)
T KOG0736|consen 503 GIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWY 575 (953)
T ss_pred eecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHH
Confidence 42 12233333333 1 2345778888999999999999977 68999999999999998877
No 323
>PF05729 NACHT: NACHT domain
Probab=98.52 E-value=8.4e-07 Score=79.01 Aligned_cols=131 Identities=21% Similarity=0.307 Sum_probs=76.3
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccC---cceEEecCCCCCch---hHHHHHHHHHHhcc----------cCCCCCc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFN---AMVLELNASDDRGI---GIVRDQIFQFASTK----------TMHKSSY 372 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----------~~~~~~~ 372 (533)
++++|+||+|||++++.++..+....... ..++.....+.... ..+.+.+....... .......
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 78999999999999999998886544222 12222322221111 12222221110000 0002456
Q ss_pred EEEEEeCCCCCCHHHH--------HHHHHHHHh-cCCCcEEEEEeCCCCCCChhhhccc---eeeeecCCCHHHHHHHhh
Q psy4285 373 KLIILDEADAMTNDAQ--------NALRRIIEK-FTTNVRFCIICNYLSKIPPAIQSRC---TRFRFGPLDSSLIMSRLD 440 (533)
Q Consensus 373 ~vliiDE~d~l~~~~~--------~~Ll~~le~-~~~~~~~I~~~n~~~~l~~~l~sR~---~~i~~~~~~~~~~~~~l~ 440 (533)
-+++||.+|.+..... ..|..++.. .+.+++++++|..... +.+.+++ ..+.+.+++++++...+.
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF--PDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH--HHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 7899999999876332 234455554 3567889888865432 1133333 578899999999888876
Q ss_pred c
Q psy4285 441 Y 441 (533)
Q Consensus 441 ~ 441 (533)
+
T Consensus 161 ~ 161 (166)
T PF05729_consen 161 K 161 (166)
T ss_pred H
Confidence 5
No 324
>PRK08727 hypothetical protein; Validated
Probab=98.52 E-value=7.2e-07 Score=84.19 Aligned_cols=94 Identities=13% Similarity=0.210 Sum_probs=77.7
Q ss_pred ceEEEEEcC-CCCc---Cchhhhcc---ceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q psy4285 7 NVRFCIICN-YLSK---ITPAIQSR---CTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNIL 79 (533)
Q Consensus 7 ~~~~il~~~-~~~~---i~~~i~SR---c~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l 79 (533)
+..+|+++| ++.. ++|.|+|| |+++.|++|+.+++.++|++.+...++.++++++..|+..++||+|.++++|
T Consensus 126 ~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L 205 (233)
T PRK08727 126 GITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALL 205 (233)
T ss_pred CCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 344677675 4443 47999999 9999999999999999999989888999999999999999999999999999
Q ss_pred HHHHH---hCCCCcchhhHHhhhh
Q psy4285 80 QSAAT---AHADEVNEDTIFTLLV 100 (533)
Q Consensus 80 ~~~~~---~~~~~i~~~~i~~~~~ 100 (533)
+.+.. .....||.+.++++++
T Consensus 206 ~~l~~~~~~~~~~it~~~~~~~l~ 229 (233)
T PRK08727 206 DRLDRESLAAKRRVTVPFLRRVLE 229 (233)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHh
Confidence 98752 2334588877766543
No 325
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.50 E-value=1.9e-07 Score=88.31 Aligned_cols=145 Identities=18% Similarity=0.268 Sum_probs=80.4
Q ss_pred chhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCch------------------
Q psy4285 290 SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI------------------ 351 (533)
Q Consensus 290 ~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~------------------ 351 (533)
.+...+.+.+++..+...+++++||+|+|||++++.+.+.+.... ...+.+........
T Consensus 4 R~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~---~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (234)
T PF01637_consen 4 REKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG---YKVVYIDFLEESNESSLRSFIEETSLADELSE 80 (234)
T ss_dssp -HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E---ECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHH
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC---CcEEEEecccchhhhHHHHHHHHHHHHHHHHH
Confidence 344455666677766556799999999999999999999873221 11111111111111
Q ss_pred -----------------------hHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC------HHHHHHHHHHHHh--cCC
Q psy4285 352 -----------------------GIVRDQIFQFASTKTMHKSSYKLIILDEADAMT------NDAQNALRRIIEK--FTT 400 (533)
Q Consensus 352 -----------------------~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~------~~~~~~Ll~~le~--~~~ 400 (533)
..+...+..+... ....+|+|||++.+. ......|.+.++. ...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-----~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (234)
T PF01637_consen 81 ALGISIPSITLEKISKDLSEDSFSALERLLEKLKKK-----GKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ 155 (234)
T ss_dssp HHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHC-----HCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred HHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhc-----CCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence 1111111111111 223899999999998 4555667777765 245
Q ss_pred CcEEEEEeCCC------CCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 401 NVRFCIICNYL------SKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 401 ~~~~I~~~n~~------~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
+..+|+++... ..-..++..|+..+.+.+++.++..+.+...
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~ 203 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKEL 203 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHH
Confidence 56666666432 1234567788888999999999999888874
No 326
>KOG0480|consensus
Probab=98.49 E-value=1.9e-06 Score=88.10 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=78.1
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecC--CCCC--chhHHHHH-HHHHHhcccC-CCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNA--SDDR--GIGIVRDQ-IFQFASTKTM-HKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~--~~~~--~~~~~~~~-~~~~~~~~~~-~~~~~~vliiDE~ 380 (533)
.|+++.|.||||||-+.++.+..+ ... ++.++ ++.. ....++.- -+.|.-.... .-+..+|..|||+
T Consensus 379 inv~iVGDPgt~KSQfLk~v~~fs------PR~-vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEF 451 (764)
T KOG0480|consen 379 INVCIVGDPGTGKSQFLKAVCAFS------PRS-VYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEF 451 (764)
T ss_pred ceEEEeCCCCccHHHHHHHHhccC------Ccc-eEecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechh
Confidence 579999999999999999988754 111 22222 1111 11111110 1112111111 1246789999999
Q ss_pred CCCCHHHHHHHHHHHHhc-------------CCCcEEEEEeCCCC-------------CCChhhhccceeeee--cCCCH
Q psy4285 381 DAMTNDAQNALRRIIEKF-------------TTNVRFCIICNYLS-------------KIPPAIQSRCTRFRF--GPLDS 432 (533)
Q Consensus 381 d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~n~~~-------------~l~~~l~sR~~~i~~--~~~~~ 432 (533)
|+|+...+.+++++||+. +..+.++.++|+.. ++.++|+|||+.+++ +.+++
T Consensus 452 DKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE 531 (764)
T KOG0480|consen 452 DKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNE 531 (764)
T ss_pred cccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCch
Confidence 999999999999999964 45566777777542 589999999975444 44554
Q ss_pred HHHHHH
Q psy4285 433 SLIMSR 438 (533)
Q Consensus 433 ~~~~~~ 438 (533)
..-..+
T Consensus 532 ~~D~~i 537 (764)
T KOG0480|consen 532 VVDYAI 537 (764)
T ss_pred HHHHHH
Confidence 433333
No 327
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.49 E-value=3.2e-07 Score=84.11 Aligned_cols=99 Identities=23% Similarity=0.325 Sum_probs=61.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHH-------HHHHhcccCC-------CCCcE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI-------FQFASTKTMH-------KSSYK 373 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-------~~~~~ 373 (533)
..++.||||||||++++.+.+.+... +..++.+ +++......+++.. ..+....... ....+
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~---g~~v~~~-apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~ 95 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAA---GKRVIGL-APTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKD 95 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHT---T--EEEE-ESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTS
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhC---CCeEEEE-CCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCccc
Confidence 37889999999999999998877443 3344443 33334444444332 1121111110 13468
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q psy4285 374 LIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412 (533)
Q Consensus 374 vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~ 412 (533)
++||||+++++......|++.+.. .+.++|++++...
T Consensus 96 vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 96 VLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp EEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred EEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 999999999999988888888864 4689999997543
No 328
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.49 E-value=6e-07 Score=94.84 Aligned_cols=94 Identities=22% Similarity=0.299 Sum_probs=77.9
Q ss_pred CCCceEEEEEc-CCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy4285 4 FTTNVRFCIIC-NYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQSA 82 (533)
Q Consensus 4 ~~~~~~~il~~-~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~~~ 82 (533)
.|.++++|.+| +++..+.|+++|||..++|++++.+++..++++.+++.++.+++++++.+..++. |.|.+.|+++.+
T Consensus 230 ~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~-n~Rel~nll~~A 308 (531)
T TIGR02902 230 LPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS-NGREAVNIVQLA 308 (531)
T ss_pred cccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHH
Confidence 35567777765 5788999999999999999999999999999999999999999999998888775 999999999998
Q ss_pred HHhCC----CCcchhhHHhh
Q psy4285 83 ATAHA----DEVNEDTIFTL 98 (533)
Q Consensus 83 ~~~~~----~~i~~~~i~~~ 98 (533)
+.... ..|+.+++.+.
T Consensus 309 a~~A~~~~~~~It~~dI~~v 328 (531)
T TIGR02902 309 AGIALGEGRKRILAEDIEWV 328 (531)
T ss_pred HHHHhhCCCcEEcHHHHHHH
Confidence 65321 23666666544
No 329
>KOG0478|consensus
Probab=98.48 E-value=1.4e-06 Score=89.68 Aligned_cols=128 Identities=21% Similarity=0.301 Sum_probs=79.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecC--CCCCc--hhHHHH-HHHHHHh-cccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNA--SDDRG--IGIVRD-QIFQFAS-TKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~--~~~~~--~~~~~~-~~~~~~~-~~~~~~~~~~vliiDE~d 381 (533)
|+||+|.||||||.+.+.+++.+-.. .+.++ +..-+ ....+. ..+++.. .....-+..++..|||+|
T Consensus 464 NILL~GDPGtsKSqlLqyv~~l~pRg-------~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFD 536 (804)
T KOG0478|consen 464 NILLVGDPGTSKSQLLQYCHRLLPRG-------VYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFD 536 (804)
T ss_pred eEEEecCCCcCHHHHHHHHHHhCCcc-------eeecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhh
Confidence 69999999999999999999875221 11111 00000 000000 0001100 111112467899999999
Q ss_pred CCCHHHHHHHHHHHHhc-------------CCCcEEEEEeCCCC-------------CCChhhhcccee--eeecCCCHH
Q psy4285 382 AMTNDAQNALRRIIEKF-------------TTNVRFCIICNYLS-------------KIPPAIQSRCTR--FRFGPLDSS 433 (533)
Q Consensus 382 ~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~n~~~-------------~l~~~l~sR~~~--i~~~~~~~~ 433 (533)
+|+.+.++.|++.||.. +..+.++.++|... .++|+|+|||+. +.+.++++.
T Consensus 537 KM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 537 KMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred hhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchh
Confidence 99999999999999863 46677888888432 489999999974 445666655
Q ss_pred HHHHHhhcC
Q psy4285 434 LIMSRLDYD 442 (533)
Q Consensus 434 ~~~~~l~~~ 442 (533)
.=+.+-.|+
T Consensus 617 ~Dr~La~Hi 625 (804)
T KOG0478|consen 617 SDRRLADHI 625 (804)
T ss_pred HHHHHHHHH
Confidence 444444444
No 330
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.48 E-value=4.2e-07 Score=96.54 Aligned_cols=100 Identities=19% Similarity=0.282 Sum_probs=67.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHcccccc-CcceEEecCCCCCchhHHHHHHHHH------------------------H
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQF-NAMVLELNASDDRGIGIVRDQIFQF------------------------A 362 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~ 362 (533)
..+++|+|||||||++..+...+...... +..-+.+.+++++....+.+.+... .
T Consensus 162 ~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~TiHrlL 241 (586)
T TIGR01447 162 FSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAAEALIAALPSEAVTIHRLL 241 (586)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccchhhhhccccccchhhhhh
Confidence 48999999999999999998776432210 1123556666666555555443321 0
Q ss_pred hccc---------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 363 STKT---------MHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 363 ~~~~---------~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
...+ ......++|||||++|++......|++.+ +.++++|++++.
T Consensus 242 g~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al---~~~~rlIlvGD~ 295 (586)
T TIGR01447 242 GIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLKAL---PPNTKLILLGDK 295 (586)
T ss_pred cccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHHHhc---CCCCEEEEECCh
Confidence 0000 01234689999999999999888888887 578999999964
No 331
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.45 E-value=5.3e-06 Score=82.66 Aligned_cols=97 Identities=14% Similarity=0.220 Sum_probs=57.1
Q ss_pred ccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEe
Q psy4285 299 RFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILD 378 (533)
Q Consensus 299 ~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiD 378 (533)
.+++.+. |+++.||||||||+++.+++....+.. + . .. .....+.+. .......-..+++|+||
T Consensus 204 ~fve~~~--Nli~lGp~GTGKThla~~l~~~~a~~s--G-~--f~-----T~a~Lf~~L----~~~~lg~v~~~DlLI~D 267 (449)
T TIGR02688 204 PLVEPNY--NLIELGPKGTGKSYIYNNLSPYVILIS--G-G--TI-----TVAKLFYNI----STRQIGLVGRWDVVAFD 267 (449)
T ss_pred HHHhcCC--cEEEECCCCCCHHHHHHHHhHHHHHHc--C-C--cC-----cHHHHHHHH----HHHHHhhhccCCEEEEE
Confidence 3455444 899999999999999999987732222 1 0 00 111111111 11110012467899999
Q ss_pred CCCCCCHH----HHHHHHHHHHhc---------CCCcEEEEEeCCC
Q psy4285 379 EADAMTND----AQNALRRIIEKF---------TTNVRFCIICNYL 411 (533)
Q Consensus 379 E~d~l~~~----~~~~Ll~~le~~---------~~~~~~I~~~n~~ 411 (533)
|+..+... ..+.|...|+.. ..+..+++.+|-.
T Consensus 268 Evgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~ 313 (449)
T TIGR02688 268 EVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVP 313 (449)
T ss_pred cCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccC
Confidence 99997543 345555556532 3467788888754
No 332
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1e-07 Score=95.16 Aligned_cols=146 Identities=15% Similarity=0.144 Sum_probs=81.4
Q ss_pred hhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccc----------------cC-cceEEecCCCC-
Q psy4285 287 LNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ----------------FN-AMVLELNASDD- 348 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~----------------~~-~~~~~~~~~~~- 348 (533)
..||+...+.+.-....+. |++++||||||||.+|+.+...+-.-.. .. ..++...+-..
T Consensus 181 V~GQ~~AKrAleiAAAGgH--nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~P 258 (490)
T COG0606 181 VKGQEQAKRALEIAAAGGH--NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAP 258 (490)
T ss_pred hcCcHHHHHHHHHHHhcCC--cEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCCccCC
Confidence 4678888877776666553 7999999999999999988755410000 00 00010000000
Q ss_pred CchhHHHHHHHHHHhcc--cCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh-------------cCCCcEEEEEeCCC--
Q psy4285 349 RGIGIVRDQIFQFASTK--TMHKSSYKLIILDEADAMTNDAQNALRRIIEK-------------FTTNVRFCIICNYL-- 411 (533)
Q Consensus 349 ~~~~~~~~~~~~~~~~~--~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~-------------~~~~~~~I~~~n~~-- 411 (533)
........+++...... ....+..+|||+||+-.......++|.+-||. ++.+..+|+++|..
T Consensus 259 HHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpc 338 (490)
T COG0606 259 HHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPC 338 (490)
T ss_pred CccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCc
Confidence 00011111221111000 00124678999999999888888888888874 34455566666632
Q ss_pred ---------------------CCCChhhhccce-eeeecCCCHHH
Q psy4285 412 ---------------------SKIPPAIQSRCT-RFRFGPLDSSL 434 (533)
Q Consensus 412 ---------------------~~l~~~l~sR~~-~i~~~~~~~~~ 434 (533)
.++..++++|++ .+....++..+
T Consensus 339 G~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e 383 (490)
T COG0606 339 GNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGE 383 (490)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHH
Confidence 235667777774 45555554333
No 333
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.44 E-value=1.6e-06 Score=85.75 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=81.3
Q ss_pred ceEEEEEcCCCCcCchhhhccc-eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy4285 7 NVRFCIICNYLSKITPAIQSRC-TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQSAATA 85 (533)
Q Consensus 7 ~~~~il~~~~~~~i~~~i~SRc-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~~~~~~ 85 (533)
.+.+|.+||.+..+.++++||| ..++|.+++.+++.+.+++.+...++.++++++..|++.++|++|.++++++.+...
T Consensus 129 ~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~ 208 (305)
T TIGR00635 129 PFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDF 208 (305)
T ss_pred CeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 3778999999999999999999 568999999999999999999988999999999999999999999999999886432
Q ss_pred ----CCCCcchhhHHhhhhh
Q psy4285 86 ----HADEVNEDTIFTLLVS 101 (533)
Q Consensus 86 ----~~~~i~~~~i~~~~~~ 101 (533)
....|+.+.+...+..
T Consensus 209 a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 209 AQVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHHcCCCCcCHHHHHHHHHH
Confidence 2345787777654443
No 334
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=98.43 E-value=2e-06 Score=84.99 Aligned_cols=102 Identities=10% Similarity=0.144 Sum_probs=86.7
Q ss_pred CCCCCCceEEEEEcCCCCc------CchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSK------ITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRK 74 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~------i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~ 74 (533)
+++||+++.+|++++...+ .+.++ ++|.++.|++++..++..|+...+.++|+.+++++++.++..++||++.
T Consensus 71 l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~-~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~ 149 (302)
T TIGR01128 71 LANPPPDTLLLIEAPKLDKRKKLTKWLKAL-KNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLA 149 (302)
T ss_pred HhcCCCCEEEEEecCCCCHhHHHHHHHHHh-cCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHH
Confidence 4678899999999875543 44555 6999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCCcchhhHHhhhhhhc
Q psy4285 75 VLNILQSAATAH-ADEVNEDTIFTLLVSRV 103 (533)
Q Consensus 75 a~~~l~~~~~~~-~~~i~~~~i~~~~~~~~ 103 (533)
+.|.++.++... +..||.+.|.+++....
T Consensus 150 l~~el~KL~~~~~~~~It~e~I~~~~~~~~ 179 (302)
T TIGR01128 150 IAQELEKLALYAPDGKITLEDVEEAVSDSA 179 (302)
T ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHhhhh
Confidence 999999988753 34699998877665443
No 335
>PRK10536 hypothetical protein; Provisional
Probab=98.42 E-value=3.4e-07 Score=85.53 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=31.6
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCC
Q psy4285 371 SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411 (533)
Q Consensus 371 ~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~ 411 (533)
..+++|+||+++++......++.-+ ..++++|++++..
T Consensus 176 ~~~~vIvDEaqn~~~~~~k~~ltR~---g~~sk~v~~GD~~ 213 (262)
T PRK10536 176 ENAVVILDEAQNVTAAQMKMFLTRL---GENVTVIVNGDIT 213 (262)
T ss_pred cCCEEEEechhcCCHHHHHHHHhhc---CCCCEEEEeCChh
Confidence 4689999999999998777777766 6789999999643
No 336
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.42 E-value=1.5e-06 Score=86.70 Aligned_cols=92 Identities=12% Similarity=0.065 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCcCchhhhccc-eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-
Q psy4285 8 VRFCIICNYLSKITPAIQSRC-TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQSAATA- 85 (533)
Q Consensus 8 ~~~il~~~~~~~i~~~i~SRc-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~~~~~~- 85 (533)
+.+|.+||+...+.++|+||| ..++|.+++.+++.++|++.+...++.++++++..|+..|+|++|.|.++|+.+...
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a 230 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFA 230 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 678999999999999999998 679999999999999999999999999999999999999999999999999986432
Q ss_pred ---CCCCcchhhHHhhh
Q psy4285 86 ---HADEVNEDTIFTLL 99 (533)
Q Consensus 86 ---~~~~i~~~~i~~~~ 99 (533)
....|+.+.+...+
T Consensus 231 ~~~~~~~I~~~~v~~~l 247 (328)
T PRK00080 231 QVKGDGVITKEIADKAL 247 (328)
T ss_pred HHcCCCCCCHHHHHHHH
Confidence 23458877776544
No 337
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.41 E-value=1.4e-06 Score=90.85 Aligned_cols=129 Identities=22% Similarity=0.322 Sum_probs=73.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC-----------Cc----hhHHHHH---HHHH-HhcccC-
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD-----------RG----IGIVRDQ---IFQF-ASTKTM- 367 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-----------~~----~~~~~~~---~~~~-~~~~~~- 367 (533)
.++|+|||||||||+++.+|+++ +..+.+...+.. .+ .+..... +..| ......
T Consensus 47 iLlLtGP~G~GKtttv~~La~el------g~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~ 120 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKEL------GFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYS 120 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh------CCeeEEecCCCCccccccccccccccccccccccchhhhhccccccccccc
Confidence 37999999999999999999998 333333221110 00 0000011 1112 000000
Q ss_pred --------CCCCcEEEEEeCCCCCCHHHHHHHHHHHH----hcCC-CcEEEEE-eC------CCC--------CCChhhh
Q psy4285 368 --------HKSSYKLIILDEADAMTNDAQNALRRIIE----KFTT-NVRFCII-CN------YLS--------KIPPAIQ 419 (533)
Q Consensus 368 --------~~~~~~vliiDE~d~l~~~~~~~Ll~~le----~~~~-~~~~I~~-~n------~~~--------~l~~~l~ 419 (533)
.....+||+|||+-.+.......|...|. .... .+.||++ ++ ... -+.+.++
T Consensus 121 ~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il 200 (519)
T PF03215_consen 121 SLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEIL 200 (519)
T ss_pred cccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHH
Confidence 11357899999997764433344444444 3222 3344444 01 111 2456676
Q ss_pred c--cceeeeecCCCHHHHHHHhhcC
Q psy4285 420 S--RCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 420 s--R~~~i~~~~~~~~~~~~~l~~~ 442 (533)
. ++..|.|.|..+.-+.+.|.++
T Consensus 201 ~~~~i~~I~FNpIa~T~mkKaL~rI 225 (519)
T PF03215_consen 201 NHPGITRIKFNPIAPTFMKKALKRI 225 (519)
T ss_pred hCCCceEEEecCCCHHHHHHHHHHH
Confidence 6 4579999999999999999888
No 338
>PRK06620 hypothetical protein; Validated
Probab=98.39 E-value=2.9e-06 Score=78.79 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=67.9
Q ss_pred chhhhccce---eEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh---CCCCcchhh
Q psy4285 21 TPAIQSRCT---RFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQSAATA---HADEVNEDT 94 (533)
Q Consensus 21 ~~~i~SRc~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~~~~~~---~~~~i~~~~ 94 (533)
+|.|+||+. ++.+++|+++++..++++.+...++.+++++++.|+..++||+|.+++.|+.+... ....||.+.
T Consensus 129 l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~ 208 (214)
T PRK06620 129 LPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISL 208 (214)
T ss_pred hHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 499999998 99999999999999999999888999999999999999999999999999997432 233588777
Q ss_pred HHhh
Q psy4285 95 IFTL 98 (533)
Q Consensus 95 i~~~ 98 (533)
++++
T Consensus 209 ~~~~ 212 (214)
T PRK06620 209 VKEV 212 (214)
T ss_pred HHHH
Confidence 6654
No 339
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.39 E-value=1.1e-06 Score=74.81 Aligned_cols=25 Identities=48% Similarity=0.723 Sum_probs=22.6
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTK 333 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~ 333 (533)
+.++|+||+||||++..++..+...
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhc
Confidence 8999999999999999999887544
No 340
>PHA00729 NTP-binding motif containing protein
Probab=98.38 E-value=5.7e-06 Score=76.14 Aligned_cols=114 Identities=20% Similarity=0.233 Sum_probs=66.1
Q ss_pred CCCceeEeCCCCCChHHHHHHHHHHHcccc-c---------cCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEE
Q psy4285 305 ELPHLLFYGPPGTGKTTTILACARKLYTKA-Q---------FNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKL 374 (533)
Q Consensus 305 ~~~~~ll~GppGtGKT~la~~la~~l~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 374 (533)
...+++++|+|||||||+|.++++.+.... . .+.....+ ....+.+.+...... ....++
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fi------d~~~Ll~~L~~a~~~----~~~~dl 85 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFF------ELPDALEKIQDAIDN----DYRIPL 85 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEE------EHHHHHHHHHHHHhc----CCCCCE
Confidence 344799999999999999999999873110 0 00111111 122222222222111 123468
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 375 IILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 375 liiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
|||||+..-... .. +-. .. + .....+.++++||+..+.|.+++++++.++++..
T Consensus 86 LIIDd~G~~~~~---~~--wh~---~~----~--~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R 139 (226)
T PHA00729 86 IIFDDAGIWLSK---YV--WYE---DY----M--KTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK 139 (226)
T ss_pred EEEeCCchhhcc---cc--hhh---hc----c--chHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence 999997542111 00 000 00 0 1122467788899999999999999999999986
No 341
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.37 E-value=1.2e-06 Score=85.95 Aligned_cols=131 Identities=18% Similarity=0.233 Sum_probs=70.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCc-ceEEecCCCCCchhHHHHHHHHHHhcccC-----------------CC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNA-MVLELNASDDRGIGIVRDQIFQFASTKTM-----------------HK 369 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 369 (533)
.+.++|++|+|||++|..+++.......++. .++.+.... ............+...... ..
T Consensus 21 ~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 99 (287)
T PF00931_consen 21 VVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNP-SLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLK 99 (287)
T ss_dssp EEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-S-CCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHC
T ss_pred EEEEEcCCcCCcceeeeeccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccchhhhc
Confidence 4899999999999999999987432222221 222222211 1122223322222221000 02
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 370 SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
....+||+|+++... ....+...+.....++++|+||.... +..........+.+.+++.++..+.+.+.
T Consensus 100 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~-v~~~~~~~~~~~~l~~L~~~ea~~L~~~~ 169 (287)
T PF00931_consen 100 DKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRS-VAGSLGGTDKVIELEPLSEEEALELFKKR 169 (287)
T ss_dssp CTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGG-GGTTHHSCEEEEECSS--HHHHHHHHHHH
T ss_pred cccceeeeeeecccc--cccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 447899999988654 23334444433445789999987643 22222223678999999999998888876
No 342
>KOG1968|consensus
Probab=98.35 E-value=2.6e-06 Score=93.08 Aligned_cols=126 Identities=31% Similarity=0.427 Sum_probs=94.7
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCC------------CCCcEEEE
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH------------KSSYKLII 376 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~vli 376 (533)
++++||||+|||+.+...++.+ +..+++.|+++.++...+.+.+..+....... .....||+
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~------g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil 433 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKEL------GFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLIL 433 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhc------ccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEE
Confidence 5899999999999999999998 78899999998887666666554432211110 12244999
Q ss_pred EeCCCCCCHHH---HHHHHHHHHhcCCCcEEEEEeCCCCCCCh-hhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 377 LDEADAMTNDA---QNALRRIIEKFTTNVRFCIICNYLSKIPP-AIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 377 iDE~d~l~~~~---~~~Ll~~le~~~~~~~~I~~~n~~~~l~~-~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
+||+|-+..+. ...+-.++. .....+|++||....-.. ++.+-|..++|..|+.+++..++..+
T Consensus 434 ~devD~~~~~dRg~v~~l~~l~~--ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si 501 (871)
T KOG1968|consen 434 MDEVDGMFGEDRGGVSKLSSLCK--KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSI 501 (871)
T ss_pred EeccccccchhhhhHHHHHHHHH--hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhh
Confidence 99999998733 344555565 345779999998775444 56566799999999999999999998
No 343
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.33 E-value=7.1e-07 Score=79.29 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=37.5
Q ss_pred CcEEEEEeCCCCC---CHHHHHHHHHHHHhcCCCcEEEEEeCC--CCCCChhhhccc--eeeeecCCCHHHHH
Q psy4285 371 SYKLIILDEADAM---TNDAQNALRRIIEKFTTNVRFCIICNY--LSKIPPAIQSRC--TRFRFGPLDSSLIM 436 (533)
Q Consensus 371 ~~~vliiDE~d~l---~~~~~~~Ll~~le~~~~~~~~I~~~n~--~~~l~~~l~sR~--~~i~~~~~~~~~~~ 436 (533)
..++++|||+..| .+...+++.++|+ ++..+|.|-.. ...+.+.+.+|. ..+.+.+-+.+.+.
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l~ 164 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLD---SNKPVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDALP 164 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHC---TTSEEEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCHH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHc---CCCcEEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhHh
Confidence 5679999999888 4567888899996 34456666543 346788888884 56666655544443
No 344
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.33 E-value=2.5e-05 Score=82.83 Aligned_cols=129 Identities=11% Similarity=0.059 Sum_probs=83.1
Q ss_pred CCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEec--CCC--CCchhHHHHHHHHHHh--ccc-CCCCCcEEEEE
Q psy4285 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELN--ASD--DRGIGIVRDQIFQFAS--TKT-MHKSSYKLIIL 377 (533)
Q Consensus 305 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~--~~~-~~~~~~~vlii 377 (533)
....+++.|++|||||+++++++..+-.. .++..+- .++ ..+...+...+..-.. .+. ...+...|||+
T Consensus 24 ~~gGv~i~g~~G~~ks~~~r~l~~llp~~----~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~l 99 (584)
T PRK13406 24 GLGGVVLRARAGPVRDRWLAALRALLPAG----TPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVL 99 (584)
T ss_pred ccceEEEEcCCCcHHHHHHHHHHHhcCCC----CCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEe
Confidence 44569999999999999999999876221 2333222 221 1222223322221111 001 11345789999
Q ss_pred eCCCCCCHHHHHHHHHHHHhc-------------CCCcEEEEEeCC---CCCCChhhhccc-eeeeecCCCHHHHHH
Q psy4285 378 DEADAMTNDAQNALRRIIEKF-------------TTNVRFCIICNY---LSKIPPAIQSRC-TRFRFGPLDSSLIMS 437 (533)
Q Consensus 378 DE~d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~n~---~~~l~~~l~sR~-~~i~~~~~~~~~~~~ 437 (533)
||+..+.+..++.|++.|++. |....+|.+-|. ...+.+++++|| ..+.+.+++..+.++
T Consensus 100 De~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~ 176 (584)
T PRK13406 100 AMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRDARE 176 (584)
T ss_pred cCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHHhcc
Confidence 999999999999999999863 344445554222 245899999999 478888888776643
No 345
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.33 E-value=5.8e-06 Score=76.07 Aligned_cols=172 Identities=15% Similarity=0.165 Sum_probs=103.7
Q ss_pred cccccCCCCHHHHHHHHHHHhhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCC
Q psy4285 267 VYNSVGYPTKTEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNAS 346 (533)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 346 (533)
+|...+.|...+....+......+.+.+..+...+..++ .-+.++|+-|+|||.+.|++...+... ....+.+...
T Consensus 13 ~~g~~~~pf~~~~~~~~~~~~a~h~e~l~~l~~~i~d~q-g~~~vtGevGsGKTv~~Ral~~s~~~d---~~~~v~i~~~ 88 (269)
T COG3267 13 HFGFSRLPFSWDIQPGLDYWAADHNEALLMLHAAIADGQ-GILAVTGEVGSGKTVLRRALLASLNED---QVAVVVIDKP 88 (269)
T ss_pred HhhhccCCCccchhhhhhhhhhhhhHHHHHHHHHHhcCC-ceEEEEecCCCchhHHHHHHHHhcCCC---ceEEEEecCc
Confidence 344444554444444444444556667777777766554 237899999999999999777666433 2334455544
Q ss_pred CCCchhHHHHHHHHHHh------------------cccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH---hcCCCcEEE
Q psy4285 347 DDRGIGIVRDQIFQFAS------------------TKTMHKSSYKLIILDEADAMTNDAQNALRRIIE---KFTTNVRFC 405 (533)
Q Consensus 347 ~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le---~~~~~~~~I 405 (533)
...........+..+.. ........+.++++||++.+..+....|..+.+ ++.+...++
T Consensus 89 ~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~iv 168 (269)
T COG3267 89 TLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIV 168 (269)
T ss_pred chhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeee
Confidence 43222222221111111 000001234799999999999988888766654 344556677
Q ss_pred EEeCCCC------CCChhhhcccee-eeecCCCHHHHHHHhhcC
Q psy4285 406 IICNYLS------KIPPAIQSRCTR-FRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 406 ~~~n~~~------~l~~~l~sR~~~-i~~~~~~~~~~~~~l~~~ 442 (533)
+++...- .....+..||.. +..+|++.++...++.+.
T Consensus 169 L~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~ 212 (269)
T COG3267 169 LIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHR 212 (269)
T ss_pred ecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHH
Confidence 7774321 112344458876 999999999888888776
No 346
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=5.2e-07 Score=89.00 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=52.9
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMR 73 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r 73 (533)
||||+.++.||++|+.++.++|||+|||++++|++++.+++.+||.+ .++. +. . .....++|.+.
T Consensus 137 LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~----~~~~--~~-~-~~l~~~~g~p~ 201 (325)
T PRK08699 137 LEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRE----RGVA--EP-E-ERLAFHSGAPL 201 (325)
T ss_pred HHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHh----cCCC--cH-H-HHHHHhCCChh
Confidence 68999999999999999999999999999999999999999999973 3432 22 1 22345778763
No 347
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.30 E-value=1e-05 Score=83.96 Aligned_cols=189 Identities=13% Similarity=0.183 Sum_probs=118.5
Q ss_pred CCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCCcchhhH
Q psy4285 17 LSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGD-MRKVLNILQSAATAHADEVNEDTI 95 (533)
Q Consensus 17 ~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~-~r~a~~~l~~~~~~~~~~i~~~~i 95 (533)
.-.+.+-|..=+.++.|+-|+.+++.+.|+.++...++.++++.++.+++.+.|- .-++.+.+..+.. ....++.+.+
T Consensus 123 ~~~~p~el~~~~~~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~-~~~~~~~~~~ 201 (489)
T CHL00195 123 ELNIPKELKDLITVLEFPLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIA-TYKTIDENSI 201 (489)
T ss_pred CCCCCHHHHhceeEEeecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HcCCCChhhH
Confidence 4567777887788999999999999999998887778888999999999998774 4555555554433 3334666654
Q ss_pred Hhhhh-------h-hccccch--hHHHHHhchHHHHhhcCCChhhHHHH-----HhhccCccccccCCCChhhHHHHHHH
Q psy4285 96 FTLLV-------S-RVEKYRP--STLDELVSHQDIISTIEIPESMLVDL-----VLKMSDIEYRLAAGTSEKIQLSALIA 160 (533)
Q Consensus 96 ~~~~~-------~-~~ek~~~--~~l~~lls~~~~l~~l~~~~~~~~~~-----~~~~~~~~~~~~~G~~~~~~l~~~~~ 160 (533)
..++. . -...|.+ ..+.++-+...++..+.-........ +.....+...|+||||||..+.+++.
T Consensus 202 ~~i~~~k~q~~~~~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 202 PLILEEKKQIISQTEILEFYSVNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred HHHHHHHHHHHhhhccccccCCCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 32221 1 1112222 24566655544433322000000000 11123366889999999999999999
Q ss_pred HHhcccccceeeeecCCcccchhhhH-----HHHhhhhhcccccCCCceEEEEcCccccCH
Q psy4285 161 AFNSARDKLEVLELNASDDRGIGIVR-----DQIFQFASTKTMHKSSYKLIILDEADAMTN 216 (533)
Q Consensus 161 ~~~~~~~~~~~~e~nasd~~g~~~~~-----d~i~~~a~~~~l~~~~~~~iilDE~d~l~~ 216 (533)
.+. ..++.+++++..+..++. .++...|. ...|.++++||+|.+..
T Consensus 282 e~~-----~~~~~l~~~~l~~~~vGese~~l~~~f~~A~-----~~~P~IL~IDEID~~~~ 332 (489)
T CHL00195 282 DWQ-----LPLLRLDVGKLFGGIVGESESRMRQMIRIAE-----ALSPCILWIDEIDKAFS 332 (489)
T ss_pred HhC-----CCEEEEEhHHhcccccChHHHHHHHHHHHHH-----hcCCcEEEehhhhhhhc
Confidence 887 678888877765544333 22222222 22466999999998753
No 348
>PHA02774 E1; Provisional
Probab=98.29 E-value=5.4e-06 Score=85.55 Aligned_cols=118 Identities=22% Similarity=0.276 Sum_probs=72.4
Q ss_pred hhhhhcccccccCC-CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCC
Q psy4285 293 LCYKINRFIDENEL-PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSS 371 (533)
Q Consensus 293 ~~~~l~~~~~~~~~-~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (533)
....++.+++.... ..++|+||||||||++|.++++.+. +..+..+|.... |.-. + -..
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~-----G~vi~fvN~~s~------------FwLq-p--l~d 479 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK-----GKVISFVNSKSH------------FWLQ-P--LAD 479 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEEECccc------------cccc-h--hcc
Confidence 44556666654322 2499999999999999999999873 222333443211 1100 1 135
Q ss_pred cEEEEEeCCCCC-CHHHHHHHHHHHHhcC-------------CCcEEEEEeCCCCCCC---hhhhccceeeeecCC
Q psy4285 372 YKLIILDEADAM-TNDAQNALRRIIEKFT-------------TNVRFCIICNYLSKIP---PAIQSRCTRFRFGPL 430 (533)
Q Consensus 372 ~~vliiDE~d~l-~~~~~~~Ll~~le~~~-------------~~~~~I~~~n~~~~l~---~~l~sR~~~i~~~~~ 430 (533)
.+++++||+-.- .......|..+|+..+ ....+|+|||....-+ ..|.||...+.|..+
T Consensus 480 ~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~f~F~n~ 555 (613)
T PHA02774 480 AKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITVFEFPNP 555 (613)
T ss_pred CCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEEEECCCC
Confidence 679999999322 1233446777776431 2256899999654444 366779888888543
No 349
>PRK06893 DNA replication initiation factor; Validated
Probab=98.28 E-value=6.1e-06 Score=77.74 Aligned_cols=93 Identities=15% Similarity=0.186 Sum_probs=75.7
Q ss_pred ceEEEEEcCC-CCc---Cchhhhccce---eEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q psy4285 7 NVRFCIICNY-LSK---ITPAIQSRCT---RFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNIL 79 (533)
Q Consensus 7 ~~~~il~~~~-~~~---i~~~i~SRc~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l 79 (533)
++.+++++|. +.. .+|.|+|||. ++++++|++++..++|++.+...++.++++++..|++.++||+|.+++.|
T Consensus 125 ~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 125 KTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred CcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 3445666654 332 4599999996 99999999999999999999888999999999999999999999999999
Q ss_pred HHHHHh---CCCCcchhhHHhhh
Q psy4285 80 QSAATA---HADEVNEDTIFTLL 99 (533)
Q Consensus 80 ~~~~~~---~~~~i~~~~i~~~~ 99 (533)
+.+... ....||...+++++
T Consensus 205 ~~l~~~~~~~~~~it~~~v~~~L 227 (229)
T PRK06893 205 DLLDKASLQAQRKLTIPFVKEIL 227 (229)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHh
Confidence 987432 23358888776654
No 350
>PRK09087 hypothetical protein; Validated
Probab=98.27 E-value=4.9e-06 Score=77.94 Aligned_cols=94 Identities=13% Similarity=0.169 Sum_probs=76.6
Q ss_pred ceEEEEEcCC-C---CcCchhhhccc---eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q psy4285 7 NVRFCIICNY-L---SKITPAIQSRC---TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNIL 79 (533)
Q Consensus 7 ~~~~il~~~~-~---~~i~~~i~SRc---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l 79 (533)
+..++++++. + ...+|.|+||| .++++++|+.+++.++|++.++..++.++++.++.|++.+.||+|.++..+
T Consensus 117 g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 117 GTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred CCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 3456666652 2 23489999999 999999999999999999999999999999999999999999999999866
Q ss_pred HHH---HHhCCCCcchhhHHhhhh
Q psy4285 80 QSA---ATAHADEVNEDTIFTLLV 100 (533)
Q Consensus 80 ~~~---~~~~~~~i~~~~i~~~~~ 100 (533)
+.+ +.....+||...+++++.
T Consensus 197 ~~L~~~~~~~~~~it~~~~~~~l~ 220 (226)
T PRK09087 197 DRLDRLALERKSRITRALAAEVLN 220 (226)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHH
Confidence 665 333345688888776654
No 351
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.25 E-value=4.1e-06 Score=86.51 Aligned_cols=172 Identities=14% Similarity=0.086 Sum_probs=109.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHH----HH----h--cccCCCCCcEEEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ----FA----S--TKTMHKSSYKLIIL 377 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~--~~~~~~~~~~vlii 377 (533)
++++.|.|||||-.+++++.+... . ..+++.+|+......-.-.++++. |. + ......+..+.+|+
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~-~---~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFl 413 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSE-A---AGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFL 413 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhccc-c---cCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHH
Confidence 489999999999999999998764 2 457788887654322222222211 11 0 01111355789999
Q ss_pred eCCCCCCHHHHHHHHHHHHhc----------CCCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHHHhh
Q psy4285 378 DEADAMTNDAQNALRRIIEKF----------TTNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440 (533)
Q Consensus 378 DE~d~l~~~~~~~Ll~~le~~----------~~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~~l~ 440 (533)
|||..|+-..|..|++.|++. +-++++|.+|+.. ..+-+.|..|+..+.+.-|+-.+.. .
T Consensus 414 deIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~---d 490 (606)
T COG3284 414 DEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLRERS---D 490 (606)
T ss_pred HHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCeeeccCchhccc---c
Confidence 999999999999999999874 3457788888654 3567778888876666666522211 1
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy4285 441 YDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498 (533)
Q Consensus 441 ~~~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (533)
+ ...+.+++. .++-.+-++-..+...+..+.||++++ ++.+.+...
T Consensus 491 ~-~~~l~~~~~----------~~~~~~~~l~~~~~~~l~~~~WPGNir-el~~v~~~~ 536 (606)
T COG3284 491 R-IPLLDRILK----------RENDWRLQLDDDALARLLAYRWPGNIR-ELDNVIERL 536 (606)
T ss_pred c-HHHHHHHHH----------HccCCCccCCHHHHHHHHhCCCCCcHH-HHHHHHHHH
Confidence 1 122233332 222244456667777888899999987 444444443
No 352
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.25 E-value=4.8e-07 Score=95.69 Aligned_cols=127 Identities=19% Similarity=0.218 Sum_probs=79.8
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEec--CCCCCc--hhHHHHHH-HHHHhc-ccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELN--ASDDRG--IGIVRDQI-FQFAST-KTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~-~~~~~~-~~~~~~~~~vliiDE~ 380 (533)
-|+|+.|.||||||.+.+.+++.+ .. .+..+ ++.+.+ ....+... +.+... .....+.++|+.|||+
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~a------Pr-~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEf 392 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLA------PR-GVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEF 392 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhC------Cc-eEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEec
Confidence 379999999999999999999875 11 12222 222111 11111111 111111 1111256789999999
Q ss_pred CCCCHHHHHHHHHHHHhc-------------CCCcEEEEEeCCCC-------------CCChhhhccceeeeec--CCCH
Q psy4285 381 DAMTNDAQNALRRIIEKF-------------TTNVRFCIICNYLS-------------KIPPAIQSRCTRFRFG--PLDS 432 (533)
Q Consensus 381 d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~n~~~-------------~l~~~l~sR~~~i~~~--~~~~ 432 (533)
|+|+.+...++...||+. +..+.+++++|+.. .++++|+|||+.+++- .+++
T Consensus 393 dKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~ 472 (682)
T COG1241 393 DKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDE 472 (682)
T ss_pred cCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCc
Confidence 999999999999999964 34566777777653 4889999999866553 3444
Q ss_pred HHHHHHhh
Q psy4285 433 SLIMSRLD 440 (533)
Q Consensus 433 ~~~~~~l~ 440 (533)
+.-..+-.
T Consensus 473 ~~D~~ia~ 480 (682)
T COG1241 473 EKDEEIAE 480 (682)
T ss_pred cchHHHHH
Confidence 33333333
No 353
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.24 E-value=1.6e-07 Score=93.17 Aligned_cols=118 Identities=22% Similarity=0.315 Sum_probs=63.8
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCC--CCCc--hhHHHHH-HHHHH-hcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNAS--DDRG--IGIVRDQ-IFQFA-STKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~--~~~~--~~~~~~~-~~~~~-~~~~~~~~~~~vliiDE~ 380 (533)
-|+||.|.||||||.+.+.+++.. . ..+..++. ...+ ....+.. .+.+. .......+..+|++|||+
T Consensus 58 ihiLlvGdpg~gKS~ll~~~~~~~------p-r~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~ 130 (331)
T PF00493_consen 58 IHILLVGDPGTGKSQLLKYVAKLA------P-RSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEF 130 (331)
T ss_dssp --EEEECSCHHCHHHHHHCCCCT-------S-SEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTT
T ss_pred cceeeccchhhhHHHHHHHHHhhC------C-ceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeeccc
Confidence 479999999999999999776543 1 11111111 1000 0000000 00000 000001245689999999
Q ss_pred CCCCHHHHHHHHHHHHhc-------------CCCcEEEEEeCCCC-------------CCChhhhccceeeee--cCCC
Q psy4285 381 DAMTNDAQNALRRIIEKF-------------TTNVRFCIICNYLS-------------KIPPAIQSRCTRFRF--GPLD 431 (533)
Q Consensus 381 d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~n~~~-------------~l~~~l~sR~~~i~~--~~~~ 431 (533)
|++..+....|++.||.. +.++.++.++|+.. .++++|.|||+.+.+ .+++
T Consensus 131 dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d 209 (331)
T PF00493_consen 131 DKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPD 209 (331)
T ss_dssp TT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT
T ss_pred ccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccc
Confidence 999999999999999963 45678999998654 478899999985543 4454
No 354
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.24 E-value=2.2e-06 Score=70.22 Aligned_cols=73 Identities=26% Similarity=0.436 Sum_probs=46.2
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccc--cCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQ--FNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 386 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~ 386 (533)
+.|+||||+|||++|+.+++.+..... ....++..+..+ .+... -.+..++++||+......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~------------~~w~g----Y~~q~vvi~DD~~~~~~~ 64 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGD------------KFWDG----YQGQPVVIIDDFGQDNDG 64 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCcc------------chhhc----cCCCcEEEEeecCccccc
Confidence 579999999999999999998864321 112233222221 11111 124579999999888643
Q ss_pred ----HHHHHHHHHHh
Q psy4285 387 ----AQNALRRIIEK 397 (533)
Q Consensus 387 ----~~~~Ll~~le~ 397 (533)
....++++++.
T Consensus 65 ~~~~~~~~l~~l~s~ 79 (107)
T PF00910_consen 65 YNYSDESELIRLISS 79 (107)
T ss_pred cchHHHHHHHHHHhc
Confidence 45667777653
No 355
>PHA02624 large T antigen; Provisional
Probab=98.24 E-value=2.8e-05 Score=80.73 Aligned_cols=128 Identities=18% Similarity=0.256 Sum_probs=76.0
Q ss_pred hhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCC
Q psy4285 293 LCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSS 371 (533)
Q Consensus 293 ~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (533)
....++.++..-...+ ++|+||||||||+++.++++.+ +..++.++.++.+.. |.-... ..
T Consensus 417 ~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L------~G~vlsVNsPt~ks~---------FwL~pl---~D 478 (647)
T PHA02624 417 IYDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLC------GGKSLNVNCPPDKLN---------FELGCA---ID 478 (647)
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHc------CCeEEEeeCCcchhH---------HHhhhh---hh
Confidence 3344455544332223 8999999999999999999988 334555776553322 111111 24
Q ss_pred cEEEEEeCCC-------------CCCHHHHHHHHHHHHhc-C-------------CCcEEEEEeCCCCCCChhhhccce-
Q psy4285 372 YKLIILDEAD-------------AMTNDAQNALRRIIEKF-T-------------TNVRFCIICNYLSKIPPAIQSRCT- 423 (533)
Q Consensus 372 ~~vliiDE~d-------------~l~~~~~~~Ll~~le~~-~-------------~~~~~I~~~n~~~~l~~~l~sR~~- 423 (533)
..+.++|++- .++ -...|+..|+.. + .-...|+|||.. .++.++.-||.
T Consensus 479 ~~~~l~dD~t~~~~~~~~Lp~G~~~d--Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ney-~iP~T~~~Rf~~ 555 (647)
T PHA02624 479 QFMVVFEDVKGQPADNKDLPSGQGMN--NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNEY-LIPQTVKARFAK 555 (647)
T ss_pred ceEEEeeeccccccccccCCcccccc--hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecCc-ccchhHHHHHHH
Confidence 5799999983 222 113455555532 1 113367777765 48899999994
Q ss_pred eeeecCCCHHHHHHHhhcCH
Q psy4285 424 RFRFGPLDSSLIMSRLDYDD 443 (533)
Q Consensus 424 ~i~~~~~~~~~~~~~l~~~~ 443 (533)
.+.|.+- .-+..-|..-|
T Consensus 556 ~~~F~~k--~~l~~sL~~~~ 573 (647)
T PHA02624 556 VLDFKPK--PYLKKSLKKNE 573 (647)
T ss_pred hcccccc--HHHHHHHhcCH
Confidence 6666543 33455555553
No 356
>KOG1970|consensus
Probab=98.23 E-value=6.6e-06 Score=83.15 Aligned_cols=128 Identities=20% Similarity=0.279 Sum_probs=71.2
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCC-------------CCCchhHHHH--HHHHHHh----------
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNAS-------------DDRGIGIVRD--QIFQFAS---------- 363 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~~~--~~~~~~~---------- 363 (533)
+|++||+||||||+++.+++++ +..+.+...+ ...+...... .++.|..
T Consensus 113 LLltGPsGcGKSTtvkvLskel------g~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~ 186 (634)
T KOG1970|consen 113 LLLTGPSGCGKSTTVKVLSKEL------GYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQM 186 (634)
T ss_pred EEEeCCCCCCchhHHHHHHHhh------CceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhh
Confidence 7999999999999999999998 4444444311 1111011111 0111111
Q ss_pred cccCCCCCcEEEEEeCCCCCCHH-H---HHHHHHHHHhcCCCcEEEEEeCCCC--------CCChhh--hccceeeeecC
Q psy4285 364 TKTMHKSSYKLIILDEADAMTND-A---QNALRRIIEKFTTNVRFCIICNYLS--------KIPPAI--QSRCTRFRFGP 429 (533)
Q Consensus 364 ~~~~~~~~~~vliiDE~d~l~~~-~---~~~Ll~~le~~~~~~~~I~~~n~~~--------~l~~~l--~sR~~~i~~~~ 429 (533)
........+++|+|||+-..... . +..+++.+-..+....|+++|+... .....+ .-|...+.|.|
T Consensus 187 ~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNP 266 (634)
T KOG1970|consen 187 SGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNP 266 (634)
T ss_pred cccccccCceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecC
Confidence 01111245679999998655432 2 2333333333333334555553221 122222 23667999999
Q ss_pred CCHHHHHHHhhcC
Q psy4285 430 LDSSLIMSRLDYD 442 (533)
Q Consensus 430 ~~~~~~~~~l~~~ 442 (533)
..+.-+.+.|.++
T Consensus 267 Ia~T~MKK~L~ri 279 (634)
T KOG1970|consen 267 IAPTIMKKFLKRI 279 (634)
T ss_pred CcHHHHHHHHHHH
Confidence 9999999999988
No 357
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.21 E-value=4.5e-06 Score=80.41 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=72.6
Q ss_pred CCCCCCceEEEEEcCC-----CCcCchhhhccc-eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh-------
Q psy4285 1 IEKFTTNVRFCIICNY-----LSKITPAIQSRC-TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDL------- 67 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~-----~~~i~~~i~SRc-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------- 67 (533)
||+++.++++|+++++ ...+.|+++||| ..+.|++++.+++.+++++.+...+..++++++..+...
T Consensus 137 ~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 216 (261)
T TIGR02881 137 MEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQL 216 (261)
T ss_pred HhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhc
Confidence 5778888888888744 345889999999 679999999999999999999988888999988887543
Q ss_pred ---cCCCHHHHHHHHHHHHHhC
Q psy4285 68 ---SDGDMRKVLNILQSAATAH 86 (533)
Q Consensus 68 ---~~g~~r~a~~~l~~~~~~~ 86 (533)
+.||.|.+.|+++.+...+
T Consensus 217 ~~~~~gn~R~~~n~~e~a~~~~ 238 (261)
T TIGR02881 217 SSREFSNARYVRNIIEKAIRRQ 238 (261)
T ss_pred cCCCCchHHHHHHHHHHHHHHH
Confidence 3699999999999986643
No 358
>PRK05642 DNA replication initiation factor; Validated
Probab=98.18 E-value=1.3e-05 Score=75.66 Aligned_cols=93 Identities=14% Similarity=0.175 Sum_probs=75.5
Q ss_pred ceEEEEEcC-CC---CcCchhhhccc---eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q psy4285 7 NVRFCIICN-YL---SKITPAIQSRC---TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNIL 79 (533)
Q Consensus 7 ~~~~il~~~-~~---~~i~~~i~SRc---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l 79 (533)
+..++++++ ++ ...+|.|+||| .++.+++|+.++...+|++.+...++.+++++++.|++.++||+|.+++.|
T Consensus 130 g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 130 GRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred CCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 455667664 22 23479999999 999999999999999999667777899999999999999999999999999
Q ss_pred HHHHHh---CCCCcchhhHHhhh
Q psy4285 80 QSAATA---HADEVNEDTIFTLL 99 (533)
Q Consensus 80 ~~~~~~---~~~~i~~~~i~~~~ 99 (533)
+.+... ...+||...+++++
T Consensus 210 ~~l~~~~l~~~~~it~~~~~~~L 232 (234)
T PRK05642 210 ERLDQASLQAQRKLTIPFLKETL 232 (234)
T ss_pred HHHHHHHHHcCCcCCHHHHHHHh
Confidence 988532 23468888776654
No 359
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.17 E-value=4.4e-06 Score=77.75 Aligned_cols=90 Identities=22% Similarity=0.312 Sum_probs=69.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhc---------ccCCCCCcEEEEEe
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST---------KTMHKSSYKLIILD 378 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~vliiD 378 (533)
.+++.||+|.||+.+|+.+-..-....++...++++|+.+.++...+..+++..... .....+..+++|+|
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfld 289 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLD 289 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEehH
Confidence 489999999999999999976544444567789999999988877776665442111 00012457899999
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q psy4285 379 EADAMTNDAQNALRRIIEK 397 (533)
Q Consensus 379 E~d~l~~~~~~~Ll~~le~ 397 (533)
|+..+..+.|..|++.+|+
T Consensus 290 eigelgadeqamllkaiee 308 (531)
T COG4650 290 EIGELGADEQAMLLKAIEE 308 (531)
T ss_pred hhhhcCccHHHHHHHHHHh
Confidence 9999999999999999986
No 360
>PRK04296 thymidine kinase; Provisional
Probab=98.14 E-value=2.3e-05 Score=71.47 Aligned_cols=93 Identities=17% Similarity=0.253 Sum_probs=55.9
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCC-C---C-------Cc-------hhHHHHHHHHHHhcccCCCC
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNAS-D---D-------RG-------IGIVRDQIFQFASTKTMHKS 370 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~-~---~-------~~-------~~~~~~~~~~~~~~~~~~~~ 370 (533)
.+++||||+||||++..++..+.... ..++.+.+. + . .+ .....+....+.. ...
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g---~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~----~~~ 77 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG---MKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE----EGE 77 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC---CeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh----hCC
Confidence 58999999999999999998875442 222222221 0 0 00 0111222222211 124
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 371 SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 371 ~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
..++|+|||++.++.+....+.+.+. +.+..+|+++-.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~ 115 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLD 115 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecC
Confidence 67899999999997775555666654 356778888744
No 361
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.12 E-value=7.7e-06 Score=89.86 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=62.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHH-----------HHHHHHHHhcccCCCCCcEEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIV-----------RDQIFQFASTKTMHKSSYKLII 376 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~vli 376 (533)
.++++|+|||||||+++++...+... +..+. +.+++++....+ ...+..+..... .....++||
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~---g~~V~-~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~-~~~~~~llI 444 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAA---GYRVI-GAALSGKAAEGLQAESGIESRTLASLEYAWANGRD-LLSDKDVLV 444 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhC---CCeEE-EEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcc-cCCCCcEEE
Confidence 47999999999999999998766332 33333 333333333322 222222211111 124678999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 377 LDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 377 iDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
|||+.+++......|++...+ .+.++|++++.
T Consensus 445 vDEasMv~~~~~~~Ll~~~~~--~~~kliLVGD~ 476 (744)
T TIGR02768 445 IDEAGMVGSRQMARVLKEAEE--AGAKVVLVGDP 476 (744)
T ss_pred EECcccCCHHHHHHHHHHHHh--cCCEEEEECCh
Confidence 999999999888888876543 46889999853
No 362
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.07 E-value=1.3e-05 Score=85.38 Aligned_cols=66 Identities=20% Similarity=0.378 Sum_probs=56.8
Q ss_pred Cchhhhc--cceeEEeCCCCHHHHHHHHHHHHhhcCCC------C-CHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy4285 20 ITPAIQS--RCTRFRFGPLDSSLIMSRLDYVIEQEKVN------V-TPDGKKAIIDLSDGDMRKVLNILQSAATA 85 (533)
Q Consensus 20 i~~~i~S--Rc~~~~~~~~~~~~~~~~l~~~~~~~~~~------~-~~~~~~~~~~~~~g~~r~a~~~l~~~~~~ 85 (533)
+.|.|+| ||.+|.|+|++...|.+.|.+|+++|+.. + +++++..|+..++||+|.|||.||.++..
T Consensus 256 L~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~~~ 330 (637)
T TIGR00602 256 MNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIRSAINSLQFSSSK 330 (637)
T ss_pred cCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHHHHHHHHHHHHhc
Confidence 5589998 66789999999999999999999877432 2 35789999999999999999999998763
No 363
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.06 E-value=2.4e-05 Score=84.04 Aligned_cols=93 Identities=19% Similarity=0.236 Sum_probs=73.7
Q ss_pred CCceEEEEEcCC---CCcCchhhhcccee--EEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHH---hcCCCHHHHH
Q psy4285 5 TTNVRFCIICNY---LSKITPAIQSRCTR--FRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIID---LSDGDMRKVL 76 (533)
Q Consensus 5 ~~~~~~il~~~~---~~~i~~~i~SRc~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~g~~r~a~ 76 (533)
...+.+|.++|+ +..+.|.++|||.. +.|+|++.+++.++|+..++.....+++++++.+++ ..+||+|+||
T Consensus 900 ~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKAL 979 (1164)
T PTZ00112 900 NSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKAL 979 (1164)
T ss_pred CCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHH
Confidence 456778888875 56889999999965 899999999999999988765434588999999988 7789999999
Q ss_pred HHHHHHHHhCC-CCcchhhHHh
Q psy4285 77 NILQSAATAHA-DEVNEDTIFT 97 (533)
Q Consensus 77 ~~l~~~~~~~~-~~i~~~~i~~ 97 (533)
.+|..+..... ..|+.+.|.+
T Consensus 980 DILRrAgEikegskVT~eHVrk 1001 (1164)
T PTZ00112 980 QICRKAFENKRGQKIVPRDITE 1001 (1164)
T ss_pred HHHHHHHhhcCCCccCHHHHHH
Confidence 99999876422 2355555543
No 364
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.02 E-value=5.6e-05 Score=71.25 Aligned_cols=93 Identities=10% Similarity=0.156 Sum_probs=76.3
Q ss_pred eEEEEEcCCC---CcCchhhhccc---eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q psy4285 8 VRFCIICNYL---SKITPAIQSRC---TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQS 81 (533)
Q Consensus 8 ~~~il~~~~~---~~i~~~i~SRc---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~~ 81 (533)
.+++++++.. ..+.+.++||| ..++++||++++....|.+.+...++.+++++++.++..+.||+|.+.+.++.
T Consensus 123 ~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~ 202 (227)
T PRK08903 123 GALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDA 202 (227)
T ss_pred cEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3466666532 24678899995 89999999999999999999888999999999999999999999999999988
Q ss_pred HHH---hCCCCcchhhHHhhhh
Q psy4285 82 AAT---AHADEVNEDTIFTLLV 100 (533)
Q Consensus 82 ~~~---~~~~~i~~~~i~~~~~ 100 (533)
+.. .....||...++++++
T Consensus 203 l~~~~~~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 203 LDRYSLEQKRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHhCCCCCHHHHHHHHh
Confidence 743 2345699888877654
No 365
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=98.02 E-value=1.3e-05 Score=89.39 Aligned_cols=96 Identities=11% Similarity=0.108 Sum_probs=61.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC-----------chhHHHHHHHHHHhcccCCCCCcEEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR-----------GIGIVRDQIFQFASTKTMHKSSYKLII 376 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~vli 376 (533)
.++++|+|||||||+.+++...+... +..++-+ +++++ ....+...+..+..... .....++||
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~---G~~V~~~-ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~-~l~~~~vlI 438 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAA---GYEVRGA-ALSGIAAENLEGGSGIASRTIASLEHGWGQGRD-LLTSRDVLV 438 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEe-cCcHHHHHHHhhccCcchhhHHHHHhhhccccc-ccccCcEEE
Confidence 47899999999999998877655322 2333333 33222 22333333222211111 124568999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 377 LDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 377 iDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
|||++|++......|++..+. .+.++|++++.
T Consensus 439 VDEASMv~~~~m~~LL~~a~~--~garvVLVGD~ 470 (988)
T PRK13889 439 IDEAGMVGTRQLERVLSHAAD--AGAKVVLVGDP 470 (988)
T ss_pred EECcccCCHHHHHHHHHhhhh--CCCEEEEECCH
Confidence 999999999988888887653 56899999853
No 366
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.97 E-value=0.00011 Score=82.51 Aligned_cols=129 Identities=20% Similarity=0.269 Sum_probs=91.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCch------hHHHHHHHHHHhc-ccCC--CCCcEEEEEe
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI------GIVRDQIFQFAST-KTMH--KSSYKLIILD 378 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~--~~~~~vliiD 378 (533)
.+++.|.||+|||+++.++|+.. +...+++|-++.... +..-+.-+.|... .+.. ...+.-+++|
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~t------G~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLD 1618 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKT------GKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLD 1618 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHh------cCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEee
Confidence 59999999999999999999987 777777776653211 1000000000000 0000 1245689999
Q ss_pred CCCCCCHHHHHHHHHHHHhc--------------CCCcEEEEEeCCCC------CCChhhhccceeeeecCCCHHHHHHH
Q psy4285 379 EADAMTNDAQNALRRIIEKF--------------TTNVRFCIICNYLS------KIPPAIQSRCTRFRFGPLDSSLIMSR 438 (533)
Q Consensus 379 E~d~l~~~~~~~Ll~~le~~--------------~~~~~~I~~~n~~~------~l~~~l~sR~~~i~~~~~~~~~~~~~ 438 (533)
|+.-.+.+..+.|...++.+ .++.++..+-|+.. .++..+..||.++.+..++.+++..+
T Consensus 1619 EiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~~d~lt~dDi~~I 1698 (4600)
T COG5271 1619 EINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDGLTTDDITHI 1698 (4600)
T ss_pred hhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhheEEecccccchHHHH
Confidence 99999888888888887742 35666666666543 58999999999999999999999999
Q ss_pred hhcC
Q psy4285 439 LDYD 442 (533)
Q Consensus 439 l~~~ 442 (533)
..+.
T Consensus 1699 a~~~ 1702 (4600)
T COG5271 1699 ANKM 1702 (4600)
T ss_pred HHhh
Confidence 9887
No 367
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.96 E-value=3.9e-05 Score=66.89 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=64.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEE-ecCCC---------------------C-----Cc-hhH---HHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLE-LNASD---------------------D-----RG-IGI---VRD 356 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~-~~~~~---------------------~-----~~-~~~---~~~ 356 (533)
.+.+|+++|+||||+|-.+|-...+.+. ...++. +.+.. . .. ... .++
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~-~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~ 82 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGY-RVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAE 82 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHH
Confidence 3778889999999999999988765531 112211 22210 0 00 011 111
Q ss_pred HHHHHHhcccCCCCCcEEEEEeCCCCCCH---HHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccc
Q psy4285 357 QIFQFASTKTMHKSSYKLIILDEADAMTN---DAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRC 422 (533)
Q Consensus 357 ~~~~~~~~~~~~~~~~~vliiDE~d~l~~---~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~ 422 (533)
... ++.... ....+++||+||+...-. -..+.++++++..|.++-+|+|+.... +.|..+.
T Consensus 83 ~~~-~a~~~~-~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p---~~l~e~A 146 (159)
T cd00561 83 GWA-FAKEAI-ASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP---KELIEAA 146 (159)
T ss_pred HHH-HHHHHH-hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC---HHHHHhC
Confidence 111 111111 135789999999976522 124578889999999999999997643 4454444
No 368
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.96 E-value=1.5e-05 Score=80.49 Aligned_cols=116 Identities=17% Similarity=0.188 Sum_probs=63.0
Q ss_pred hhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchh------HHHHHHHHHHh--
Q psy4285 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIG------IVRDQIFQFAS-- 363 (533)
Q Consensus 292 ~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-- 363 (533)
.+.+.+...+......+++++||.|||||++.+++...+... + ..+.+.++++..+. .++..++--..
T Consensus 8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~---~-~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~ 83 (364)
T PF05970_consen 8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR---G-KKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNN 83 (364)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc---c-ceEEEecchHHHHHhccCCcchHHhcCcccccc
Confidence 333333333333344468999999999999999999877332 1 12223333322211 11211110000
Q ss_pred -----------cccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH---------hcCCCcEEEEEeCCC
Q psy4285 364 -----------TKTMHKSSYKLIILDEADAMTNDAQNALRRIIE---------KFTTNVRFCIICNYL 411 (533)
Q Consensus 364 -----------~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le---------~~~~~~~~I~~~n~~ 411 (533)
.....-...++|||||+.+++......+-+.|. .+-.+..+|+.++..
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~lIiDEism~~~~~l~~i~~~lr~i~~~~~~~~pFGG~~vil~GDf~ 151 (364)
T PF05970_consen 84 EKSQCKISKNSRLRERLRKADVLIIDEISMVSADMLDAIDRRLRDIRKSKDSDKPFGGKQVILFGDFL 151 (364)
T ss_pred ccccccccccchhhhhhhhheeeecccccchhHHHHHHHHHhhhhhhcccchhhhcCcceEEeehhhh
Confidence 000001245799999999999887766554443 233456778877543
No 369
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.95 E-value=8.6e-05 Score=65.69 Aligned_cols=23 Identities=43% Similarity=0.739 Sum_probs=21.1
Q ss_pred eeEeCCCCCChHHHHHHHHHHHc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~ 331 (533)
++++||||+|||+++..++..+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998874
No 370
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.94 E-value=5.1e-06 Score=82.98 Aligned_cols=117 Identities=19% Similarity=0.212 Sum_probs=66.4
Q ss_pred CCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEe--------cCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEE
Q psy4285 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLEL--------NASDDRGIGIVRDQIFQFASTKTMHKSSYKLIIL 377 (533)
Q Consensus 306 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlii 377 (533)
+.++.||||+|+|||.+.-.+...+-........+-.. .... ...+.+......+. ....+|++
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~-~~~~~l~~va~~l~-------~~~~lLcf 133 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLR-GQDDPLPQVADELA-------KESRLLCF 133 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHh-CCCccHHHHHHHHH-------hcCCEEEE
Confidence 34599999999999999999988763321100000000 0000 01111222222221 34569999
Q ss_pred eCCCCCCHHHHHHHHHHHHh-cCCCcEEEEEeCCCCC--------------CChhhhccceeeeecCC
Q psy4285 378 DEADAMTNDAQNALRRIIEK-FTTNVRFCIICNYLSK--------------IPPAIQSRCTRFRFGPL 430 (533)
Q Consensus 378 DE~d~l~~~~~~~Ll~~le~-~~~~~~~I~~~n~~~~--------------l~~~l~sR~~~i~~~~~ 430 (533)
||++--+....-.|-++++. ...++.+|+|||.+.. ..+.|.++|.++.+...
T Consensus 134 DEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 134 DEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred eeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCC
Confidence 99987765444333333332 2466889999986531 23466778888887665
No 371
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.93 E-value=8.8e-05 Score=83.34 Aligned_cols=135 Identities=21% Similarity=0.271 Sum_probs=99.6
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccC---C--------CCCcEEEEE
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTM---H--------KSSYKLIIL 377 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~vlii 377 (533)
+|+-||+.+|||+++..+|+.. ++.++++|..+... ..+.++.+...... + -.++.-+++
T Consensus 891 ~LiQGpTSSGKTSMI~yla~~t------ghkfVRINNHEHTd---lqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVL 961 (4600)
T COG5271 891 LLIQGPTSSGKTSMILYLARET------GHKFVRINNHEHTD---LQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVL 961 (4600)
T ss_pred EEEecCCCCCcchHHHHHHHHh------CccEEEecCcccch---HHHHhhceeecCCCceeeehhHHHHHHhcCcEEEe
Confidence 8999999999999999999987 78888888654322 22222222211100 0 123568999
Q ss_pred eCCCCCCHHHHHHHHHHHHh--------------cCCCcEEEEEeCCCC------CCChhhhccceeeeecCCCHHHHHH
Q psy4285 378 DEADAMTNDAQNALRRIIEK--------------FTTNVRFCIICNYLS------KIPPAIQSRCTRFRFGPLDSSLIMS 437 (533)
Q Consensus 378 DE~d~l~~~~~~~Ll~~le~--------------~~~~~~~I~~~n~~~------~l~~~l~sR~~~i~~~~~~~~~~~~ 437 (533)
||..-...+..++|.++++. |.++.++..|-|+|. .+..+++.||..++|...+++++..
T Consensus 962 DELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipedEle~ 1041 (4600)
T COG5271 962 DELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDELEE 1041 (4600)
T ss_pred eccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCcHHHHHH
Confidence 99999999999999999974 345566666667654 4788999999999999999999999
Q ss_pred HhhcC----HHHHHHHHHH
Q psy4285 438 RLDYD----DISFFNIIIW 452 (533)
Q Consensus 438 ~l~~~----~~~~~~ll~~ 452 (533)
+|... |.-...+.+.
T Consensus 1042 ILh~rc~iapSyakKiVeV 1060 (4600)
T COG5271 1042 ILHGRCEIAPSYAKKIVEV 1060 (4600)
T ss_pred HHhccCccCHHHHHHHHHH
Confidence 99987 5555555554
No 372
>KOG2228|consensus
Probab=97.91 E-value=0.00017 Score=69.02 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=80.3
Q ss_pred hhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHH------------
Q psy4285 295 YKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA------------ 362 (533)
Q Consensus 295 ~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 362 (533)
..+++-+..|....+++.||.|+|||.+........ ...+-....+.+|+.-....-.++++..++.
T Consensus 38 ~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~-q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gs 116 (408)
T KOG2228|consen 38 ELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI-QENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGS 116 (408)
T ss_pred HHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH-HhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecc
Confidence 334444445555569999999999999887665541 1111123455666543221111221111110
Q ss_pred ------------hcccCCCCCcEEEEEeCCCCCCH-HHHHHHHHHHHh---cCCCcEEEEEeCCC---CCCChhhhccce
Q psy4285 363 ------------STKTMHKSSYKLIILDEADAMTN-DAQNALRRIIEK---FTTNVRFCIICNYL---SKIPPAIQSRCT 423 (533)
Q Consensus 363 ------------~~~~~~~~~~~vliiDE~d~l~~-~~~~~Ll~~le~---~~~~~~~I~~~n~~---~~l~~~l~sR~~ 423 (533)
.......+.+-+.|+||+|-..+ ..|--|+..+|- ....+.+|..|... +.+...++|||.
T Consensus 117 fte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFs 196 (408)
T KOG2228|consen 117 FTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFS 196 (408)
T ss_pred cchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcc
Confidence 00111123456777789997754 455555666552 23335566655444 356789999993
Q ss_pred ---eeeecCCCHHHHHHHhhcC
Q psy4285 424 ---RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 424 ---~i~~~~~~~~~~~~~l~~~ 442 (533)
...+++.+-++..++.+..
T Consensus 197 hr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 197 HRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred cceeeccCCCChHHHHHHHHHH
Confidence 3344556667777777665
No 373
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.89 E-value=6.9e-05 Score=61.95 Aligned_cols=60 Identities=25% Similarity=0.215 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHhhhchhh----hhhhcccccccCC--Cc-eeEeCCCCCChHHHHHHHHHHHcccc
Q psy4285 275 TKTEITNILRWLLNESMDL----CYKINRFIDENEL--PH-LLFYGPPGTGKTTTILACARKLYTKA 334 (533)
Q Consensus 275 ~~~~~~~~l~~~~~~~~~~----~~~l~~~~~~~~~--~~-~ll~GppGtGKT~la~~la~~l~~~~ 334 (533)
....++..+...+.||.-+ ...+..++....+ |- +-|+|+||||||.+++.||+.++..+
T Consensus 15 ~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G 81 (127)
T PF06309_consen 15 NITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSG 81 (127)
T ss_pred CHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcc
Confidence 3455666666666777544 4455566655432 22 56999999999999999999998764
No 374
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.87 E-value=9.1e-05 Score=79.73 Aligned_cols=76 Identities=24% Similarity=0.268 Sum_probs=64.6
Q ss_pred eEEEEEc-CCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy4285 8 VRFCIIC-NYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQSAAT 84 (533)
Q Consensus 8 ~~~il~~-~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~~~~~ 84 (533)
+++|.+| +++..+.|+|+|||..+.|++++.+++..++++.+.+.++.+++++++.|+.++. +.|+|+|.|+.+..
T Consensus 324 ~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~-~gRraln~L~~~~~ 400 (615)
T TIGR02903 324 FVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI-EGRKAVNILADVYG 400 (615)
T ss_pred EEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 3444434 5677899999999999999999999999999999988888899998888888764 88999999988753
No 375
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.84 E-value=0.00012 Score=65.07 Aligned_cols=27 Identities=37% Similarity=0.599 Sum_probs=23.7
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccc
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTK 333 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~ 333 (533)
|-++|+|+||+||||+|+.+|+.+...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 458999999999999999999998543
No 376
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.84 E-value=2e-05 Score=71.83 Aligned_cols=102 Identities=19% Similarity=0.312 Sum_probs=48.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCC-CCc---------------hhHHHHHHHH---------HH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD-DRG---------------IGIVRDQIFQ---------FA 362 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~~---------------~~~~~~~~~~---------~~ 362 (533)
.+++.||+|||||.+|.+.|..+...+.+..-++.-+... +.. ...+...+.. ..
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~~~~~~~~ 100 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGKEKLEELI 100 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhChHhHHHHh
Confidence 5899999999999999999987765543332222211110 000 0011111111 00
Q ss_pred hcc------cCC----CCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q psy4285 363 STK------TMH----KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412 (533)
Q Consensus 363 ~~~------~~~----~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~ 412 (533)
... ..+ .-...++|+||+..+++.....++. +...++++|++++...
T Consensus 101 ~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~skii~~GD~~Q 157 (205)
T PF02562_consen 101 QNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKIIITGDPSQ 157 (205)
T ss_dssp HTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EEEEEE----
T ss_pred hcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEEEEecCcee
Confidence 000 000 1236899999999999876555544 4467899999997543
No 377
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.83 E-value=0.00014 Score=68.44 Aligned_cols=92 Identities=14% Similarity=0.247 Sum_probs=74.5
Q ss_pred eEEEEEcCCCC-c--Cc-hhhhccc---eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 8 VRFCIICNYLS-K--IT-PAIQSRC---TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 8 ~~~il~~~~~~-~--i~-~~i~SRc---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
..+|++++... . +. +.++||+ ..+++++++++++...+++.+.+.++.+++++++.|+..+.||+|.+.+.++
T Consensus 124 ~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 124 GRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred CeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 46778777433 2 23 8899997 5899999999999999999888888999999999999999999999999988
Q ss_pred HHHH---hCCCCcchhhHHhhh
Q psy4285 81 SAAT---AHADEVNEDTIFTLL 99 (533)
Q Consensus 81 ~~~~---~~~~~i~~~~i~~~~ 99 (533)
.+.. ..+..||.+.+.+++
T Consensus 204 ~~~~~~~~~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 204 ALDRASLAAKRKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHhCCCCCHHHHHHHh
Confidence 8753 334468888776543
No 378
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.83 E-value=8.1e-05 Score=83.60 Aligned_cols=96 Identities=14% Similarity=0.201 Sum_probs=62.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHH-------HHHH----HhcccCCCCCcEEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQ-------IFQF----ASTKTMHKSSYKLII 376 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~~~~~~~~~~~vli 376 (533)
..++.|++||||||+.+++...+... +..++-+ +++++....+.+. +..+ ..... .-....|||
T Consensus 399 ~~~v~G~AGTGKTt~l~~~~~~~e~~---G~~V~g~-ApTgkAA~~L~e~~Gi~a~TIas~ll~~~~~~~-~l~~~~vlV 473 (1102)
T PRK13826 399 IAAVVGRAGAGKTTMMKAAREAWEAA---GYRVVGG-ALAGKAAEGLEKEAGIQSRTLSSWELRWNQGRD-QLDNKTVFV 473 (1102)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEE-cCcHHHHHHHHHhhCCCeeeHHHHHhhhccCcc-CCCCCcEEE
Confidence 47999999999999999998765332 3344433 3333333333221 1111 11111 113468999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 377 LDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 377 iDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
|||++|++......|++..+. .++++|++++.
T Consensus 474 IDEAsMv~~~~m~~Ll~~~~~--~garvVLVGD~ 505 (1102)
T PRK13826 474 LDEAGMVASRQMALFVEAVTR--AGAKLVLVGDP 505 (1102)
T ss_pred EECcccCCHHHHHHHHHHHHh--cCCEEEEECCH
Confidence 999999999999999988864 46899999854
No 379
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.81 E-value=7.6e-05 Score=66.82 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=60.8
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEE-ecCC---------------------CC---C--c----hhHHH
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLE-LNAS---------------------DD---R--G----IGIVR 355 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~-~~~~---------------------~~---~--~----~~~~~ 355 (533)
.++++||++|.||||.|..++....+.+. ...++. +.+. .. . . ....+
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~-~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~ 101 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGK-KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAAR 101 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCC-eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHH
Confidence 35999999999999999999988765531 111111 1110 00 0 0 01111
Q ss_pred HHHHHHHhcccCCCCCcEEEEEeCCCCCCH---HHHHHHHHHHHhcCCCcEEEEEeCCCC
Q psy4285 356 DQIFQFASTKTMHKSSYKLIILDEADAMTN---DAQNALRRIIEKFTTNVRFCIICNYLS 412 (533)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~vliiDE~d~l~~---~~~~~Ll~~le~~~~~~~~I~~~n~~~ 412 (533)
+........ .....+++||+||+-.... =....++++|+..|.++-+|+|+....
T Consensus 102 ~~~~~a~~~--l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 102 EGWEEAKRM--LADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHH--HhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 111111111 1135789999999855422 113567888888899999999997543
No 380
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.81 E-value=3.7e-05 Score=70.19 Aligned_cols=78 Identities=10% Similarity=0.098 Sum_probs=64.8
Q ss_pred ceEEEEEcCCCCcCchhhhccceeE-EeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy4285 7 NVRFCIICNYLSKITPAIQSRCTRF-RFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQSAAT 84 (533)
Q Consensus 7 ~~~~il~~~~~~~i~~~i~SRc~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~~~~~ 84 (533)
...+|-+|+....+.+|+++|+-++ ++...+.+++.+++.+.+...++++++++...|++.|.|.+|-|.++|..+..
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 4568889999999999999999764 89999999999999999989999999999999999999999999999988743
No 381
>KOG0477|consensus
Probab=97.80 E-value=1.1e-05 Score=82.29 Aligned_cols=123 Identities=15% Similarity=0.247 Sum_probs=73.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEec-CCCC--Cchh-----HHHHHHHHHHhcccCCCCCcEEEEEeC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELN-ASDD--RGIG-----IVRDQIFQFASTKTMHKSSYKLIILDE 379 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~-~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~vliiDE 379 (533)
|+||.|.||||||-..+.+++.. ...++... ++.. .... ..+++.-. .... .-+..+|.+|||
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s------~RAV~tTGqGASavGLTa~v~KdPvtrEWTLE--aGAL-VLADkGvClIDE 554 (854)
T KOG0477|consen 484 NVLLLGDPGTAKSQFLKYAEKTS------PRAVFTTGQGASAVGLTAYVRKDPVTREWTLE--AGAL-VLADKGVCLIDE 554 (854)
T ss_pred eEEEecCCCccHHHHHHHHHhcC------cceeEeccCCccccceeEEEeeCCccceeeec--cCeE-EEccCceEEeeh
Confidence 59999999999999999998864 22222111 0000 0000 11111100 0000 124578999999
Q ss_pred CCCCCHHHHHHHHHHHHhc-------------CCCcEEEEEeCCCC-------------CCChhhhccceeeee-----c
Q psy4285 380 ADAMTNDAQNALRRIIEKF-------------TTNVRFCIICNYLS-------------KIPPAIQSRCTRFRF-----G 428 (533)
Q Consensus 380 ~d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~n~~~-------------~l~~~l~sR~~~i~~-----~ 428 (533)
+|+|+......+..+||+. ...+.+|+++|... .+.++++|||+.+.. .
T Consensus 555 FDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd 634 (854)
T KOG0477|consen 555 FDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVD 634 (854)
T ss_pred hhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeeecccC
Confidence 9999887666777777653 35678899988621 578899999964433 3
Q ss_pred CCCHHHHHHHh
Q psy4285 429 PLDSSLIMSRL 439 (533)
Q Consensus 429 ~~~~~~~~~~l 439 (533)
|..++.+.+.+
T Consensus 635 ~~~De~lA~fV 645 (854)
T KOG0477|consen 635 PVQDEKLAKFV 645 (854)
T ss_pred chhHHHHHHHH
Confidence 44444444444
No 382
>CHL00181 cbbX CbbX; Provisional
Probab=97.80 E-value=3.9e-05 Score=74.59 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=71.5
Q ss_pred CCCCCCceEEEEEcCCC-----CcCchhhhccce-eEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh-------
Q psy4285 1 IEKFTTNVRFCIICNYL-----SKITPAIQSRCT-RFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDL------- 67 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~-----~~i~~~i~SRc~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------- 67 (533)
||++..++++|+++++. ..++|+++|||. .+.|++++.+++.+++.+.+++.+..+++++...+...
T Consensus 155 me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~ 234 (287)
T CHL00181 155 MENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQ 234 (287)
T ss_pred HhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCC
Confidence 57778889988888632 345799999985 79999999999999999999988888888877666554
Q ss_pred -cCCCHHHHHHHHHHHHHhCC
Q psy4285 68 -SDGDMRKVLNILQSAATAHA 87 (533)
Q Consensus 68 -~~g~~r~a~~~l~~~~~~~~ 87 (533)
.-||.|.+.|+++.+...+.
T Consensus 235 ~~~GNaR~vrn~ve~~~~~~~ 255 (287)
T CHL00181 235 PLFANARSVRNALDRARMRQA 255 (287)
T ss_pred CCCccHHHHHHHHHHHHHHHH
Confidence 23999999999999877543
No 383
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.80 E-value=3.9e-05 Score=69.64 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=21.2
Q ss_pred cccCCCceeEeCCCCCChHHHHHHHHHHHccc
Q psy4285 302 DENELPHLLFYGPPGTGKTTTILACARKLYTK 333 (533)
Q Consensus 302 ~~~~~~~~ll~GppGtGKT~la~~la~~l~~~ 333 (533)
..+..++++++|++|+|||++.+.+...+...
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 33444569999999999999999998887544
No 384
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.79 E-value=0.00019 Score=61.75 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.++||+|||||++.+.+|...
T Consensus 31 ~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhcc
Confidence 58999999999999999999764
No 385
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.77 E-value=0.00022 Score=68.29 Aligned_cols=138 Identities=16% Similarity=0.234 Sum_probs=86.0
Q ss_pred hcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEE
Q psy4285 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLII 376 (533)
Q Consensus 297 l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vli 376 (533)
+.+.+... .+|+++.|.+|+||+++++..+... +..++.+..+..-+....++.++........ .+.+.+++
T Consensus 23 i~RvL~~~-~Gh~LLvG~~GsGr~sl~rLaa~i~------~~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~-~~~~~vfl 94 (268)
T PF12780_consen 23 ISRVLSQP-RGHALLVGVGGSGRQSLARLAAFIC------GYEVFQIEITKGYSIKDFKEDLKKALQKAGI-KGKPTVFL 94 (268)
T ss_dssp HHHHHCST-TEEEEEECTTTSCHHHHHHHHHHHT------TEEEE-TTTSTTTHHHHHHHHHHHHHHHHHC-S-S-EEEE
T ss_pred HHHHHcCC-CCCeEEecCCCccHHHHHHHHHHHh------ccceEEEEeeCCcCHHHHHHHHHHHHHHHhc-cCCCeEEE
Confidence 34444432 3579999999999999999777654 5566777666655566666666665443332 35677888
Q ss_pred EeCCCCCCHHHHHH---------------------HHHH---------------------HHhcCCCcEEEEEeCCCCC-
Q psy4285 377 LDEADAMTNDAQNA---------------------LRRI---------------------IEKFTTNVRFCIICNYLSK- 413 (533)
Q Consensus 377 iDE~d~l~~~~~~~---------------------Ll~~---------------------le~~~~~~~~I~~~n~~~~- 413 (533)
++|.+-......+. +... +++-..+.++|++-++...
T Consensus 95 l~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~rvr~nLHivl~~sp~~~~ 174 (268)
T PF12780_consen 95 LTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIERVRKNLHIVLCMSPVGPN 174 (268)
T ss_dssp EECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHHHCCCEEEEEEESTTTTC
T ss_pred ecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHHHHhheeEEEEECCCCch
Confidence 88876553321111 1111 1122577888888765542
Q ss_pred ------CChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 414 ------IPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 414 ------l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
.-|+|.++|....|.++|.+.+..+-.+.
T Consensus 175 ~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~ 209 (268)
T PF12780_consen 175 FRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKF 209 (268)
T ss_dssp CCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHH
T ss_pred HHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHH
Confidence 34788888999999999999888776654
No 386
>PRK05629 hypothetical protein; Validated
Probab=97.76 E-value=0.0002 Score=71.06 Aligned_cols=102 Identities=12% Similarity=0.144 Sum_probs=86.1
Q ss_pred CCCCCceEEEEEcCCCC---cCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHH
Q psy4285 2 EKFTTNVRFCIICNYLS---KITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNI 78 (533)
Q Consensus 2 E~~~~~~~~il~~~~~~---~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~ 78 (533)
++|++.+.+||++.... ++..+++..+.++.|.++...++..|+.+.+.+.|+++++++++.++..+++|+..+.+-
T Consensus 89 ~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~~~L~~~~g~dl~~l~~E 168 (318)
T PRK05629 89 VDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVVHALLEGVGSDLRELASA 168 (318)
T ss_pred hCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHH
Confidence 56778888888885332 344578888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCcchhhHHhhhhhhc
Q psy4285 79 LQSAATAHADEVNEDTIFTLLVSRV 103 (533)
Q Consensus 79 l~~~~~~~~~~i~~~~i~~~~~~~~ 103 (533)
++.++...++.||.+.|.+++....
T Consensus 169 leKL~~~~~~~It~e~V~~~v~~~~ 193 (318)
T PRK05629 169 ISQLVEDTQGNVTVEKVRAYYVGVA 193 (318)
T ss_pred HHHHHhcCCCCcCHHHHHHHhCCCc
Confidence 9988765456799999977666544
No 387
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.76 E-value=0.0014 Score=61.25 Aligned_cols=131 Identities=18% Similarity=0.238 Sum_probs=77.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC---------------chhH-------HHHHHHHHHhcc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR---------------GIGI-------VRDQIFQFASTK 365 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~---------------~~~~-------~~~~~~~~~~~~ 365 (533)
.+++.|++|+|||+++..+...+... +. .++.+...... ..+. ..+.+.......
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~--f~-~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHK--FD-HIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhccc--CC-EEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 48999999999999999998765332 11 11111111100 0011 111122222211
Q ss_pred cC-CCCCcEEEEEeCCCCCCHHHHHHHHHHHH-hcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 366 TM-HKSSYKLIILDEADAMTNDAQNALRRIIE-KFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 366 ~~-~~~~~~vliiDE~d~l~~~~~~~Ll~~le-~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
.. ......++|+|++..- .-....+...+. .+.-++.+|+.+.....+++.+++-...+.+...+..++..++...
T Consensus 92 ~~~k~~~~~LiIlDD~~~~-~~k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDK-KLKSKILRQFFNNGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFNNSKRDLENIYRNM 169 (241)
T ss_pred cccCCCCCeEEEEeCCCCc-hhhhHHHHHHHhcccccceEEEEEeeecccCCHHHhhcceEEEEecCcHHHHHHHHHhc
Confidence 11 1245789999998641 112233444443 3456788999999999999999887765555567877777776665
No 388
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.76 E-value=0.00026 Score=62.48 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=62.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceE-EecCCCCCch-----------------------------hHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVL-ELNASDDRGI-----------------------------GIVRDQ 357 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~-~~~~~~~~~~-----------------------------~~~~~~ 357 (533)
-+.+++++|.||||.|..+|-...+.+. ...++ .+.+....+. ...++.
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~ 85 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGK-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAA 85 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCC-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHH
Confidence 4788999999999999999988765531 11111 1111100000 111111
Q ss_pred HHHHHhcccCCCCCcEEEEEeCCCC------CCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccc
Q psy4285 358 IFQFASTKTMHKSSYKLIILDEADA------MTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRC 422 (533)
Q Consensus 358 ~~~~~~~~~~~~~~~~vliiDE~d~------l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~ 422 (533)
....... .....+++||+||+.. ++. +.++++|+..|.++-+|+|+... ++.|....
T Consensus 86 ~~~a~~~--l~~~~~DlvVLDEi~~A~~~gli~~---~~v~~lL~~rp~~~evVlTGR~~---p~~l~e~A 148 (173)
T TIGR00708 86 WQHAKEM--LADPELDLVLLDELTYALKYGYLDV---EEVVEALQERPGHQHVIITGRGC---PQDLLELA 148 (173)
T ss_pred HHHHHHH--HhcCCCCEEEehhhHHHHHCCCcCH---HHHHHHHHhCCCCCEEEEECCCC---CHHHHHhC
Confidence 1111111 1135789999999863 333 36778888889999999999755 34444443
No 389
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.73 E-value=0.00018 Score=74.24 Aligned_cols=95 Identities=17% Similarity=0.173 Sum_probs=79.3
Q ss_pred ceEEEEEcCCC----CcCchhhhccc---eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q psy4285 7 NVRFCIICNYL----SKITPAIQSRC---TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNIL 79 (533)
Q Consensus 7 ~~~~il~~~~~----~~i~~~i~SRc---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l 79 (533)
+..+|++|+.+ ..+.+.|+||| .++.+.+|+.++...+|++.++..++.++++.++.|+....||+|..++.|
T Consensus 235 ~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l 314 (445)
T PRK12422 235 GKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHAL 314 (445)
T ss_pred CCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 34577777653 45779999999 799999999999999999999999999999999999999999999999999
Q ss_pred HHHH---Hh---CCCCcchhhHHhhhhh
Q psy4285 80 QSAA---TA---HADEVNEDTIFTLLVS 101 (533)
Q Consensus 80 ~~~~---~~---~~~~i~~~~i~~~~~~ 101 (533)
+.++ .. .+..||.+.+.+++..
T Consensus 315 ~~l~~~~a~~~~~~~~i~~~~~~~~l~~ 342 (445)
T PRK12422 315 TLLAKRVAYKKLSHQLLYVDDIKALLHD 342 (445)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 9884 21 2345888887766653
No 390
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.72 E-value=0.00046 Score=70.42 Aligned_cols=131 Identities=20% Similarity=0.224 Sum_probs=82.0
Q ss_pred hhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCch-hHHHHHHHHHHhcccCCCCCcE
Q psy4285 295 YKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI-GIVRDQIFQFASTKTMHKSSYK 373 (533)
Q Consensus 295 ~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 373 (533)
..+.+.+..... .++++||.+|||||+++.+.+.+.. ..+.++..+.... ....+....+..... .+..
T Consensus 27 ~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~------~~iy~~~~d~~~~~~~l~d~~~~~~~~~~---~~~~ 96 (398)
T COG1373 27 PRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLE------EIIYINFDDLRLDRIELLDLLRAYIELKE---REKS 96 (398)
T ss_pred HHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCc------ceEEEEecchhcchhhHHHHHHHHHHhhc---cCCc
Confidence 334444443322 5799999999999999887776522 1444444433221 122333333333222 1457
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCC----CCChhhhccceeeeecCCCHHHHHHH
Q psy4285 374 LIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS----KIPPAIQSRCTRFRFGPLDSSLIMSR 438 (533)
Q Consensus 374 vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~----~l~~~l~sR~~~i~~~~~~~~~~~~~ 438 (533)
.+|+||++.+..+ ..++..+.+..+. .+++++.... ...+.+..|...+.+.|++-.+....
T Consensus 97 yifLDEIq~v~~W-~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 97 YIFLDEIQNVPDW-ERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred eEEEecccCchhH-HHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 9999999999775 4466666665443 6676665443 45567777888999999998888654
No 391
>KOG1968|consensus
Probab=97.70 E-value=6.8e-05 Score=82.25 Aligned_cols=153 Identities=20% Similarity=0.231 Sum_probs=108.4
Q ss_pred hhhccccchhHHHHHhchHHHHhhc-CCChhhH--------HHHHhhccC--ccccccCCCChhhHHHHHHHHHhccccc
Q psy4285 100 VSRVEKYRPSTLDELVSHQDIISTI-EIPESML--------VDLVLKMSD--IEYRLAAGTSEKIQLSALIAAFNSARDK 168 (533)
Q Consensus 100 ~~~~ek~~~~~l~~lls~~~~l~~l-~~~~~~~--------~~~~~~~~~--~~~~~~~G~~~~~~l~~~~~~~~~~~~~ 168 (533)
..|.++|.|....++..+......+ +|.+.|+ ......... ....|+||.|+|+.+...+..+.
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g----- 382 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELG----- 382 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcc-----
Confidence 4688999998877776655443222 2322221 000000111 35678999999998877777776
Q ss_pred ceeeeecCCcccchhhhHHHHhhhhhcccccCCC------------ceEEEEcCccccCHHHHH-------HHH------
Q psy4285 169 LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------------YKLIILDEADAMTNDAQN-------ALR------ 223 (533)
Q Consensus 169 ~~~~e~nasd~~g~~~~~d~i~~~a~~~~l~~~~------------~~~iilDE~d~l~~~a~~-------~LR------ 223 (533)
+.++|.|++|.|+.....++++.+.....+.+.. ..++++||+|.|...... +.+
T Consensus 383 ~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~ks~~Pi 462 (871)
T KOG1968|consen 383 FKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKKSSRPL 462 (871)
T ss_pred cceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHHhccCCe
Confidence 8999999999999998889998888877775433 118899999999762222 111
Q ss_pred ------------------------------------------ccCCCChhHHHHHHHhccCchHHhhcHHHHHHhh
Q psy4285 224 ------------------------------------------RKLPVTPDGKKAIIDLSDGDMRKVLNILQSAATA 257 (533)
Q Consensus 224 ------------------------------------------r~~~~~~~~l~~l~~~s~~di~~~L~~L~~~~~~ 257 (533)
..+.++++.++.+...+.+|+|+.++.|+.....
T Consensus 463 v~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~~~~ 538 (871)
T KOG1968|consen 463 VCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFWSLS 538 (871)
T ss_pred EEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHHhhhhcc
Confidence 0357889999999999999999999999987443
No 392
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=97.69 E-value=0.00027 Score=70.60 Aligned_cols=101 Identities=15% Similarity=0.221 Sum_probs=84.2
Q ss_pred CCCCCCceEEEEEcCCC----CcCchhhhccceeEEeCCC---CHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHH
Q psy4285 1 IEKFTTNVRFCIICNYL----SKITPAIQSRCTRFRFGPL---DSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMR 73 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~----~~i~~~i~SRc~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r 73 (533)
+|+||+++++|+++... .+...++...|.+..|.++ +.+++..|++..+.+.|+.+++++++.++...+||++
T Consensus 88 l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~ 167 (326)
T PRK07452 88 LPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVERTAQELGVKLTPEAAELLAEAVGNDSR 167 (326)
T ss_pred HcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCccHH
Confidence 47888999999975432 3466778889999998776 4577999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC---CCCcchhhHHhhhhh
Q psy4285 74 KVLNILQSAATAH---ADEVNEDTIFTLLVS 101 (533)
Q Consensus 74 ~a~~~l~~~~~~~---~~~i~~~~i~~~~~~ 101 (533)
.+.|-++.++... +..||.+.|..++..
T Consensus 168 ~l~~EleKL~ly~~~~~~~It~~~V~~~v~~ 198 (326)
T PRK07452 168 RLYNELEKLALYAENSTKPISAEEVKALVSN 198 (326)
T ss_pred HHHHHHHHHHHhccCCCCccCHHHHHHHhcc
Confidence 9999999998752 346999999876653
No 393
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.67 E-value=0.00021 Score=74.49 Aligned_cols=93 Identities=12% Similarity=0.145 Sum_probs=75.3
Q ss_pred EEEEEcCC-CCc---Cchhhhccc---eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q psy4285 9 RFCIICNY-LSK---ITPAIQSRC---TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQS 81 (533)
Q Consensus 9 ~~il~~~~-~~~---i~~~i~SRc---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~~ 81 (533)
.+++++|. +.. +.|.|+||+ .++.|.+|+.++...+|++.+...++.++++.++.|+..+.||+|.++..|+.
T Consensus 246 ~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~ 325 (450)
T PRK00149 246 QIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNR 325 (450)
T ss_pred cEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHH
Confidence 35666654 333 668999999 68999999999999999999988899999999999999999999997777766
Q ss_pred HHH---hCCCCcchhhHHhhhhh
Q psy4285 82 AAT---AHADEVNEDTIFTLLVS 101 (533)
Q Consensus 82 ~~~---~~~~~i~~~~i~~~~~~ 101 (533)
+.. ..+..||.+.+.+++..
T Consensus 326 l~~~~~~~~~~it~~~~~~~l~~ 348 (450)
T PRK00149 326 LIAYASLTGKPITLELAKEALKD 348 (450)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHH
Confidence 643 23456888888776654
No 394
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.66 E-value=6.1e-05 Score=73.24 Aligned_cols=87 Identities=13% Similarity=0.229 Sum_probs=73.4
Q ss_pred CCCCCCceEEEEEcCC-----CCcCchhhhccc-eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh-------
Q psy4285 1 IEKFTTNVRFCIICNY-----LSKITPAIQSRC-TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDL------- 67 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~-----~~~i~~~i~SRc-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------- 67 (533)
||+...++++|+++++ +..++|+++||| ..+.|++++.+|+.+++.+.+++.+..+++++...+..+
T Consensus 154 le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~ 233 (284)
T TIGR02880 154 MENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQ 233 (284)
T ss_pred HhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCC
Confidence 4667788888888754 235689999999 679999999999999999999888888999988888776
Q ss_pred -cCCCHHHHHHHHHHHHHhCC
Q psy4285 68 -SDGDMRKVLNILQSAATAHA 87 (533)
Q Consensus 68 -~~g~~r~a~~~l~~~~~~~~ 87 (533)
.-||.|.+.|+++.+...+.
T Consensus 234 ~~~GN~R~lrn~ve~~~~~~~ 254 (284)
T TIGR02880 234 PHFANARSIRNAIDRARLRQA 254 (284)
T ss_pred CCCChHHHHHHHHHHHHHHHH
Confidence 24999999999999987654
No 395
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.66 E-value=0.00016 Score=65.93 Aligned_cols=99 Identities=19% Similarity=0.261 Sum_probs=67.4
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 388 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~ 388 (533)
++|.|+.|+||||..+.|+...+.. . +... ...+....+. +.-++.+||++.+.....
T Consensus 55 lvl~G~QG~GKStf~~~L~~~~~~d-----~---~~~~--~~kd~~~~l~------------~~~iveldEl~~~~k~~~ 112 (198)
T PF05272_consen 55 LVLVGKQGIGKSTFFRKLGPEYFSD-----S---INDF--DDKDFLEQLQ------------GKWIVELDELDGLSKKDV 112 (198)
T ss_pred eeEecCCcccHHHHHHHHhHHhccC-----c---cccC--CCcHHHHHHH------------HhHheeHHHHhhcchhhH
Confidence 7999999999999999997664222 1 1111 1122222221 224899999999997777
Q ss_pred HHHHHHHHh---------------cCCCcEEEEEeCCCCCC-ChhhhccceeeeecC
Q psy4285 389 NALRRIIEK---------------FTTNVRFCIICNYLSKI-PPAIQSRCTRFRFGP 429 (533)
Q Consensus 389 ~~Ll~~le~---------------~~~~~~~I~~~n~~~~l-~~~l~sR~~~i~~~~ 429 (533)
+.|-..+.. .+..+.||.|||...-| |++=-|||..+.+..
T Consensus 113 ~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 113 EALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred HHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 777777642 24567789999987744 566678998777776
No 396
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=97.66 E-value=0.00056 Score=68.73 Aligned_cols=97 Identities=8% Similarity=0.135 Sum_probs=80.6
Q ss_pred ceEEEEEcCCCC---cC---chhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 7 NVRFCIICNYLS---KI---TPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 7 ~~~~il~~~~~~---~i---~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
++.|++.++... ++ ..++.++|.++.|++++..++..|++..+.+.|+.+++++++.++..++||++.+.+-++
T Consensus 111 ~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~ 190 (340)
T PRK05574 111 DLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELE 190 (340)
T ss_pred cEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHH
Confidence 455666654322 33 678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CCCcchhhHHhhhhhhc
Q psy4285 81 SAATAH-ADEVNEDTIFTLLVSRV 103 (533)
Q Consensus 81 ~~~~~~-~~~i~~~~i~~~~~~~~ 103 (533)
.++... +..||.+.|.+++....
T Consensus 191 KL~l~~~~~~It~~~I~~~i~~~~ 214 (340)
T PRK05574 191 KLALLYPDGKITLEDVEEAVPDSA 214 (340)
T ss_pred HHHhhcCCCCCCHHHHHHHHhhhh
Confidence 998754 33499999877665543
No 397
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.65 E-value=0.00015 Score=73.06 Aligned_cols=22 Identities=45% Similarity=0.652 Sum_probs=21.2
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
+++.|.||||||.+|..+++.+
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHh
Confidence 7899999999999999999998
No 398
>PRK14532 adenylate kinase; Provisional
Probab=97.63 E-value=0.00097 Score=60.76 Aligned_cols=23 Identities=30% Similarity=0.634 Sum_probs=21.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
++++.||||+||||+++.+|+.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47999999999999999999886
No 399
>PRK07914 hypothetical protein; Reviewed
Probab=97.62 E-value=0.00062 Score=67.66 Aligned_cols=103 Identities=8% Similarity=0.114 Sum_probs=84.3
Q ss_pred CCCCCCceEEEEEcCCCC---cCchhhhcc-ceeEEeCCC-CHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLS---KITPAIQSR-CTRFRFGPL-DSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKV 75 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~---~i~~~i~SR-c~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a 75 (533)
++.||+.+.+||+++... ++..+|+.. |.++.|.++ +..++..|+++.+.+.|+.+++++++.++...+||+..+
T Consensus 88 l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~~A~~~L~~~~g~dl~~l 167 (320)
T PRK07914 88 AADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKEFRSLRVKVDDDTVTALLDAVGSDLREL 167 (320)
T ss_pred HhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHH
Confidence 367888888888864322 234477766 679999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcchhhHHhhhhhhc
Q psy4285 76 LNILQSAATAHADEVNEDTIFTLLVSRV 103 (533)
Q Consensus 76 ~~~l~~~~~~~~~~i~~~~i~~~~~~~~ 103 (533)
-+-++.++...++.||.+.|.+++....
T Consensus 168 ~~EleKL~~~~~~~It~e~V~~~v~~~~ 195 (320)
T PRK07914 168 ASACSQLVADTGGAVDAAAVRRYHSGKA 195 (320)
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHcCCCe
Confidence 9999988754455799999877665443
No 400
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.60 E-value=0.00023 Score=83.58 Aligned_cols=100 Identities=19% Similarity=0.164 Sum_probs=62.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccc-cCcceEEecCCCCCc----------hhHHHHHHHHHHh---cccCCCCCcE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQ-FNAMVLELNASDDRG----------IGIVRDQIFQFAS---TKTMHKSSYK 373 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~---~~~~~~~~~~ 373 (533)
.+++.|.|||||||+.+.+...+..... .+..++-+ +++++. ...+...+..... .........+
T Consensus 986 ~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~gl-APTgrAAk~L~e~Gi~A~TI~s~L~~~~~~~~~~~~~~~~~~ 1064 (1747)
T PRK13709 986 FTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGL-GPTHRAVGEMRSAGVDAQTLASFLHDTQLQQRSGETPDFSNT 1064 (1747)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEE-CCcHHHHHHHHhcCcchhhHHHHhcccccccccccCCCCCCc
Confidence 4899999999999999999887531100 02223322 333332 2233333321100 0000113468
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 374 LIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 374 vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
++||||++|++......|++.++. .+.++|++++.
T Consensus 1065 llIVDEaSMv~~~~m~~Ll~~~~~--~garvVLVGD~ 1099 (1747)
T PRK13709 1065 LFLLDESSMVGNTDMARAYALIAA--GGGRAVSSGDT 1099 (1747)
T ss_pred EEEEEccccccHHHHHHHHHhhhc--CCCEEEEecch
Confidence 999999999999999999998863 35899999853
No 401
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.60 E-value=0.00042 Score=63.02 Aligned_cols=24 Identities=42% Similarity=0.447 Sum_probs=21.0
Q ss_pred eeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~ 332 (533)
++++||||||||+++..++.....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~ 25 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA 25 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999887643
No 402
>PRK14528 adenylate kinase; Provisional
Probab=97.59 E-value=0.00084 Score=60.99 Aligned_cols=23 Identities=39% Similarity=0.814 Sum_probs=21.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
++++.||||+||||+++.+++.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 403
>KOG0482|consensus
Probab=97.59 E-value=0.00036 Score=70.04 Aligned_cols=110 Identities=18% Similarity=0.254 Sum_probs=67.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEE-ecCCCCCc--hhHHHHHHHH-H--HhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLE-LNASDDRG--IGIVRDQIFQ-F--ASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~-~--~~~~~~~~~~~~vliiDE~d 381 (533)
|+++.|.||+.||-+.+.+.+..-. ..+. -.++.+-+ ..+++.-+-. . ..... .-+..+|..|||+|
T Consensus 377 NicLmGDPGVAKSQLLkyi~rlapR------gvYTTGrGSSGVGLTAAVmkDpvTgEM~LEGGAL-VLAD~GICCIDEfD 449 (721)
T KOG0482|consen 377 NICLMGDPGVAKSQLLKYISRLAPR------GVYTTGRGSSGVGLTAAVMKDPVTGEMVLEGGAL-VLADGGICCIDEFD 449 (721)
T ss_pred eEEecCCCchhHHHHHHHHHhcCcc------cceecCCCCCccccchhhhcCCCCCeeEeccceE-EEccCceEeehhhh
Confidence 5999999999999999999885411 1111 11222111 1122211100 0 00000 01457899999999
Q ss_pred CCCHHHHHHHHHHHHhc-------------CCCcEEEEEeCCCC-------------CCChhhhcccee
Q psy4285 382 AMTNDAQNALRRIIEKF-------------TTNVRFCIICNYLS-------------KIPPAIQSRCTR 424 (533)
Q Consensus 382 ~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~n~~~-------------~l~~~l~sR~~~ 424 (533)
+|.....-++.+.||+. ...+.++.+.|... .|+++|+|||+.
T Consensus 450 KM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDl 518 (721)
T KOG0482|consen 450 KMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDL 518 (721)
T ss_pred hhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhh
Confidence 99998888999999863 23355666666431 589999999963
No 404
>KOG0481|consensus
Probab=97.58 E-value=8.3e-05 Score=74.50 Aligned_cols=121 Identities=19% Similarity=0.233 Sum_probs=74.0
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecC--CC--CCchhHHHHHHH-HHHhcc-cCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNA--SD--DRGIGIVRDQIF-QFASTK-TMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~-~~~~~~-~~~~~~~~vliiDE~ 380 (533)
-|+|+.|.|||.|+-+.+.+-+.. .--++.++ +. +....+++.-.. .|.... ...-+.++|+.|||+
T Consensus 365 INVLLLGDPgtAKSQlLKFvEkvs-------PIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEF 437 (729)
T KOG0481|consen 365 INVLLLGDPGTAKSQLLKFVEKVS-------PIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEF 437 (729)
T ss_pred eeEEEecCCchhHHHHHHHHHhcC-------ceEEEecCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehh
Confidence 359999999999999999876542 11122221 11 111222222111 111100 001245789999999
Q ss_pred CCCCHHHHHHHHHHHHhc-------------CCCcEEEEEeCCCC-------------CCChhhhccceeeeecCCCHHH
Q psy4285 381 DAMTNDAQNALRRIIEKF-------------TTNVRFCIICNYLS-------------KIPPAIQSRCTRFRFGPLDSSL 434 (533)
Q Consensus 381 d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~n~~~-------------~l~~~l~sR~~~i~~~~~~~~~ 434 (533)
|+|..+..-++.+.||+. ...+.++.+.|... .+-++++|||+.+++..-...+
T Consensus 438 DKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~ 517 (729)
T KOG0481|consen 438 DKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDE 517 (729)
T ss_pred hccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcc
Confidence 999999888999999863 34566777777542 2568999999877775443333
No 405
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.57 E-value=0.00029 Score=73.82 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=36.2
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q psy4285 370 SSYKLIILDEA-DAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412 (533)
Q Consensus 370 ~~~~vliiDE~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~ 412 (533)
.+++++|+||+ +.++++.+..+++++++.-+++.+|-++.++.
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~t 575 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPT 575 (604)
T ss_pred cCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchh
Confidence 46899999998 67889999999999988656788999987654
No 406
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.00097 Score=66.66 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=21.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.++|.||+|+||||++..++..+.
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998763
No 407
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.56 E-value=0.00029 Score=81.81 Aligned_cols=100 Identities=18% Similarity=0.170 Sum_probs=60.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccc-cccCcceEEecCCCCCch----------hHHHHHHHHHH---hcccCCCCCcE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTK-AQFNAMVLELNASDDRGI----------GIVRDQIFQFA---STKTMHKSSYK 373 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~~~~ 373 (533)
.+++.|+|||||||+.+.+...+..- ...+..++-+ +++++.. ..+...+.... ...........
T Consensus 854 ~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~gl-APTgkAa~~L~e~Gi~A~TIasfL~~~~~~~~~~~~~~~~~~ 932 (1623)
T PRK14712 854 FTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGL-GPTHRAVGEMRSAGVDAQTLASFLHDTQLQQRSGETPDFSNT 932 (1623)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEE-echHHHHHHHHHhCchHhhHHHHhccccchhhcccCCCCCCc
Confidence 48999999999999998887654210 0002223322 3333222 22333222110 00000012468
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 374 LIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 374 vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
++||||++|++......|++.++. .+.++|++++.
T Consensus 933 llIVDEASMV~~~~m~~ll~~~~~--~garvVLVGD~ 967 (1623)
T PRK14712 933 LFLLDESSMVGNTDMARAYALIAA--GGGRAVASGDT 967 (1623)
T ss_pred EEEEEccccccHHHHHHHHHhhhh--CCCEEEEEcch
Confidence 999999999999999999998863 45899999964
No 408
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.55 E-value=0.0011 Score=57.76 Aligned_cols=140 Identities=19% Similarity=0.203 Sum_probs=73.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 387 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~ 387 (533)
.++++|.|||||||+++.++ .+ +..++.++. ..+....... .....+=+++|+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l------g~~~i~l~e-----------l~~e~~~~~~-~de~r~s~~vD~-------- 54 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL------GYKVIELNE-----------LAKENGLYTE-YDELRKSVIVDV-------- 54 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh------CCceeeHHH-----------HHHhcCCeec-cCCccceEEeeH--------
Confidence 47899999999999999999 55 555554431 1111000000 011223444443
Q ss_pred HHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC---HHHHHH-----HHHH--HHHHH
Q psy4285 388 QNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD---DISFFN-----IIIW--YIKIQ 457 (533)
Q Consensus 388 ~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~---~~~~~~-----ll~~--~~~l~ 457 (533)
..+...+++.-.....|+-+.....++ -|..+..-.-+++.+.++|+.. ++.+.+ +++. .+...
T Consensus 55 -d~~~~~le~~~~~~~~Ivd~H~~hl~~-----~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E 128 (180)
T COG1936 55 -DKLRKRLEELLREGSGIVDSHLSHLLP-----DCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVE 128 (180)
T ss_pred -HHHHHHHHHHhccCCeEeechhhhcCC-----CCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443212223444444333222 4566666677788888888887 222222 2221 11111
Q ss_pred HH-----HHhcCCCHHHHHHHHHHHHHh
Q psy4285 458 EI-----KIEKGLALTDILTEISLLVHR 480 (533)
Q Consensus 458 ~l-----~~~~~~~~~di~~~~~~~~~~ 480 (533)
.. ..+.+.++.++...+.+.+..
T Consensus 129 ~~~~v~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 129 RFEAVIEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred hcCceEEEECCCCCHHHHHHHHHHHHcc
Confidence 10 034567888888888877663
No 409
>PRK06851 hypothetical protein; Provisional
Probab=97.55 E-value=0.00028 Score=70.22 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.9
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTK 333 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~ 333 (533)
+++.|+|||||||+++.+++++...
T Consensus 217 ~~i~G~pG~GKstl~~~i~~~a~~~ 241 (367)
T PRK06851 217 YFLKGRPGTGKSTMLKKIAKAAEER 241 (367)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhC
Confidence 8999999999999999999998554
No 410
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.55 E-value=6.2e-05 Score=69.54 Aligned_cols=21 Identities=52% Similarity=0.762 Sum_probs=18.9
Q ss_pred ceeEeCCCCCChHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACAR 328 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~ 328 (533)
.++|||+||+||||+|+.++.
T Consensus 14 ~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 14 MYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred EEEEECCCCCCHHHHHHhcCC
Confidence 389999999999999998863
No 411
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.54 E-value=0.00048 Score=70.94 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=76.0
Q ss_pred ceEEEEEcCC-C---CcCchhhhccc---eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q psy4285 7 NVRFCIICNY-L---SKITPAIQSRC---TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNIL 79 (533)
Q Consensus 7 ~~~~il~~~~-~---~~i~~~i~SRc---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l 79 (533)
+..+|+++|. + ..+.+.|+||+ .++.|.+|+.++...+|++.+...++.++++.++.|+....||+|.....|
T Consensus 232 ~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l 311 (405)
T TIGR00362 232 GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGAL 311 (405)
T ss_pred CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 3457777764 2 24668899998 579999999999999999999999999999999999999999999866555
Q ss_pred HHH---HHhCCCCcchhhHHhhhhhh
Q psy4285 80 QSA---ATAHADEVNEDTIFTLLVSR 102 (533)
Q Consensus 80 ~~~---~~~~~~~i~~~~i~~~~~~~ 102 (533)
+.+ +...+..||.+.+.+++...
T Consensus 312 ~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 312 NRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 554 33344568888877766543
No 412
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.53 E-value=0.00027 Score=64.03 Aligned_cols=92 Identities=22% Similarity=0.320 Sum_probs=52.5
Q ss_pred CCceeEeCCCCCChHHHHHHHHHHHccccc--cCcceEEecCCCC-----Cch---------hHHH------HHHHHHHh
Q psy4285 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQ--FNAMVLELNASDD-----RGI---------GIVR------DQIFQFAS 363 (533)
Q Consensus 306 ~~~~ll~GppGtGKT~la~~la~~l~~~~~--~~~~~~~~~~~~~-----~~~---------~~~~------~~~~~~~~ 363 (533)
..|.|+.|||||||||+.+-+|+.+...-. ....+.-++.... .+. +..+ ..+....
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIr- 215 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIR- 215 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHH-
Confidence 346899999999999999999998743210 1112222222110 111 1111 1111111
Q ss_pred cccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEe
Q psy4285 364 TKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408 (533)
Q Consensus 364 ~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~ 408 (533)
.-.+.|+|+||+.... ..-+++.+++ ..+.+|.|.
T Consensus 216 -----sm~PEViIvDEIGt~~--d~~A~~ta~~---~GVkli~Ta 250 (308)
T COG3854 216 -----SMSPEVIIVDEIGTEE--DALAILTALH---AGVKLITTA 250 (308)
T ss_pred -----hcCCcEEEEeccccHH--HHHHHHHHHh---cCcEEEEee
Confidence 1246799999999853 3356667774 667888776
No 413
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.52 E-value=0.00081 Score=68.28 Aligned_cols=92 Identities=23% Similarity=0.278 Sum_probs=70.7
Q ss_pred CceEEEEEcCCCC---cCchhhhccc--eeEEeCCCCHHHHHHHHHHHHhh--cCCCCCHHHHHHH---HHhcCCCHHHH
Q psy4285 6 TNVRFCIICNYLS---KITPAIQSRC--TRFRFGPLDSSLIMSRLDYVIEQ--EKVNVTPDGKKAI---IDLSDGDMRKV 75 (533)
Q Consensus 6 ~~~~~il~~~~~~---~i~~~i~SRc--~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~---~~~~~g~~r~a 75 (533)
.++.+|+++|.+. .+.+.++||| ..+.|+|++.+++.++|+..++. ....+++++++.+ +..++||+|+|
T Consensus 164 ~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 164 AKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred CeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 6788999998775 6889999998 47999999999999999987752 2234677776664 44557999999
Q ss_pred HHHHHHHHHh----CCCCcchhhHHh
Q psy4285 76 LNILQSAATA----HADEVNEDTIFT 97 (533)
Q Consensus 76 ~~~l~~~~~~----~~~~i~~~~i~~ 97 (533)
++++..+... ....|+.+.+..
T Consensus 244 l~~l~~a~~~a~~~~~~~it~~~v~~ 269 (365)
T TIGR02928 244 IDLLRVAGEIAEREGAERVTEDHVEK 269 (365)
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 9999987643 223588877654
No 414
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.51 E-value=0.0021 Score=73.62 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=81.2
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHH-----------------------------
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQ----------------------------- 357 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 357 (533)
+-++++||+|.||||++..+++... ...++.+...+..........
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-----~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-----NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSS 107 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-----CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHH
Confidence 4589999999999999999876431 223444443332111110110
Q ss_pred -HHHHHhcccCCCCCcEEEEEeCCCCCCHHH-HHHHHHHHHhcCCCcEEEEEeCCCCCCC-hhhh--ccceeeeec--CC
Q psy4285 358 -IFQFASTKTMHKSSYKLIILDEADAMTNDA-QNALRRIIEKFTTNVRFCIICNYLSKIP-PAIQ--SRCTRFRFG--PL 430 (533)
Q Consensus 358 -~~~~~~~~~~~~~~~~vliiDE~d~l~~~~-~~~Ll~~le~~~~~~~~I~~~n~~~~l~-~~l~--sR~~~i~~~--~~ 430 (533)
+..+..... ....+-+||||+++.++... ...+..+++..+.+..+|+++.....+. ..++ ..+..+... ++
T Consensus 108 ~~~~~~~~l~-~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f 186 (903)
T PRK04841 108 LFAQLFIELA-DWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAF 186 (903)
T ss_pred HHHHHHHHHh-cCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCC
Confidence 111100000 01356799999999997544 4466666777788889988886533231 1222 222333333 88
Q ss_pred CHHHHHHHhhcC------HHHHHHHHHH
Q psy4285 431 DSSLIMSRLDYD------DISFFNIIIW 452 (533)
Q Consensus 431 ~~~~~~~~l~~~------~~~~~~ll~~ 452 (533)
+.++....+... ++++..+.+.
T Consensus 187 ~~~e~~~ll~~~~~~~~~~~~~~~l~~~ 214 (903)
T PRK04841 187 DHQEAQQFFDQRLSSPIEAAESSRLCDD 214 (903)
T ss_pred CHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 999999988654 5566666654
No 415
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.49 E-value=9.8e-05 Score=61.92 Aligned_cols=22 Identities=41% Similarity=0.791 Sum_probs=20.9
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
+++.||||+||||+|+.+++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 416
>KOG3347|consensus
Probab=97.49 E-value=0.0001 Score=61.99 Aligned_cols=27 Identities=44% Similarity=0.623 Sum_probs=24.1
Q ss_pred cCCCceeEeCCCCCChHHHHHHHHHHH
Q psy4285 304 NELPHLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 304 ~~~~~~ll~GppGtGKT~la~~la~~l 330 (533)
...|++|++|-|||||||++..+|...
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 345789999999999999999999776
No 417
>PF14516 AAA_35: AAA-like domain
Probab=97.48 E-value=0.0046 Score=61.61 Aligned_cols=142 Identities=12% Similarity=0.136 Sum_probs=79.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCC--C---Cchh-HHHHHHHH---------------------
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD--D---RGIG-IVRDQIFQ--------------------- 360 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--~---~~~~-~~~~~~~~--------------------- 360 (533)
.+.+.||..+|||++...+.+.+... +...+.++... . .... -.+.....
T Consensus 33 ~~~I~apRq~GKTSll~~l~~~l~~~---~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 33 YIRIKAPRQMGKTSLLLRLLERLQQQ---GYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred EEEEECcccCCHHHHHHHHHHHHHHC---CCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 58999999999999999999887544 23333333221 1 1110 00000000
Q ss_pred ------HHhc-ccCCCCCcEEEEEeCCCCCCH--HHHHHHHHHH----Hhc-----CCCcEEEEEeCCCCCCChhh-hc-
Q psy4285 361 ------FAST-KTMHKSSYKLIILDEADAMTN--DAQNALRRII----EKF-----TTNVRFCIICNYLSKIPPAI-QS- 420 (533)
Q Consensus 361 ------~~~~-~~~~~~~~~vliiDE~d~l~~--~~~~~Ll~~l----e~~-----~~~~~~I~~~n~~~~l~~~l-~s- 420 (533)
+... .......+-||+|||+|.+.. .....++..+ ++. ....++|+++.....+.... .|
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SP 189 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSP 189 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCC
Confidence 0000 000014577999999999865 3333444443 332 23466777765333222222 12
Q ss_pred --cceeeeecCCCHHHHHHHhhcC-----HHHHHHHHHH
Q psy4285 421 --RCTRFRFGPLDSSLIMSRLDYD-----DISFFNIIIW 452 (533)
Q Consensus 421 --R~~~i~~~~~~~~~~~~~l~~~-----~~~~~~ll~~ 452 (533)
-...+.+++.+.+++.+.+... ++.+..+.++
T Consensus 190 FNIg~~i~L~~Ft~~ev~~L~~~~~~~~~~~~~~~l~~~ 228 (331)
T PF14516_consen 190 FNIGQPIELPDFTPEEVQELAQRYGLEFSQEQLEQLMDW 228 (331)
T ss_pred cccccceeCCCCCHHHHHHHHHhhhccCCHHHHHHHHHH
Confidence 2357888999999999888877 4556666665
No 418
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.47 E-value=0.00055 Score=58.40 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
+++++||+|+|||+++..++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 5899999999999999999888754
No 419
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.46 E-value=0.00047 Score=66.13 Aligned_cols=28 Identities=39% Similarity=0.494 Sum_probs=24.0
Q ss_pred cCCCceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 304 NELPHLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 304 ~~~~~~ll~GppGtGKT~la~~la~~l~ 331 (533)
+...++++.||||+||||+.+.++..+.
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 3335799999999999999999998763
No 420
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.46 E-value=0.00016 Score=66.49 Aligned_cols=124 Identities=19% Similarity=0.278 Sum_probs=81.9
Q ss_pred hHHHHHhchHHHHhhcCCChhhH--HHHHh-h-ccCccccccCCCChhhHHHHHHHHHhcccccceeeeecCCcccchhh
Q psy4285 109 STLDELVSHQDIISTIEIPESML--VDLVL-K-MSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGI 184 (533)
Q Consensus 109 ~~l~~lls~~~~l~~l~~~~~~~--~~~~~-~-~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~~~~e~nasd~~g~~~ 184 (533)
-++++++++++...++++..+.. +..+. + ...+.++||||||||..+.+++.... ..++-++|...-|..+
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k-----vp~l~vkat~liGehV 192 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK-----VPLLLVKATELIGEHV 192 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC-----CceEEechHHHHHHHh
Confidence 36889998887765543211111 11111 1 13567999999999988888777665 7889999999888888
Q ss_pred hH--HHHhhhhhcccccCCCceEEEEcCccccC-HHHHHHHHccCCCChhHHHHHHHhccCchHHhhcHHHHHHhh
Q psy4285 185 VR--DQIFQFASTKTMHKSSYKLIILDEADAMT-NDAQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAATA 257 (533)
Q Consensus 185 ~~--d~i~~~a~~~~l~~~~~~~iilDE~d~l~-~~a~~~LRr~~~~~~~~l~~l~~~s~~di~~~L~~L~~~~~~ 257 (533)
+. .+|.+.-..-. ..+|-++++||.|.+. +.-++-|| ||+.+.+|.|...--.
T Consensus 193 Gdgar~Ihely~rA~--~~aPcivFiDE~DAiaLdRryQelR------------------GDVsEiVNALLTelDg 248 (368)
T COG1223 193 GDGARRIHELYERAR--KAAPCIVFIDELDAIALDRRYQELR------------------GDVSEIVNALLTELDG 248 (368)
T ss_pred hhHHHHHHHHHHHHH--hcCCeEEEehhhhhhhhhhhHHHhc------------------ccHHHHHHHHHHhccC
Confidence 87 55533322111 2356699999999885 44444453 8888888888765433
No 421
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=97.45 E-value=0.0018 Score=65.06 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=82.4
Q ss_pred CCCCCCceEEEEEcCCCC---cCchhhh--ccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLS---KITPAIQ--SRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKV 75 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~---~i~~~i~--SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a 75 (533)
++.|++.+++|+.+.... ++...+. -....+.|.+++..++.+|+.+.+++.|+.+++++++.++..++||++.+
T Consensus 102 l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l 181 (343)
T PRK06585 102 LESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDELAEAGLRITPDARALLVALLGGDRLAS 181 (343)
T ss_pred HcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhCCCHHHH
Confidence 356788888888765432 2222221 23467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC--CCcchhhHHhhhhhhcc
Q psy4285 76 LNILQSAATAHA--DEVNEDTIFTLLVSRVE 104 (533)
Q Consensus 76 ~~~l~~~~~~~~--~~i~~~~i~~~~~~~~e 104 (533)
.|-|+.++...+ ..||.++|.++++...+
T Consensus 182 ~~EleKL~ly~~~~~~It~edV~~lv~~~~e 212 (343)
T PRK06585 182 RNEIEKLALYAHGKGEITLDDVRAVVGDASA 212 (343)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHhCCccc
Confidence 999999987633 46999999877666544
No 422
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.43 E-value=0.00041 Score=71.76 Aligned_cols=93 Identities=14% Similarity=0.154 Sum_probs=76.2
Q ss_pred eEEEEEcC-CCC---cCchhhhccce---eEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 8 VRFCIICN-YLS---KITPAIQSRCT---RFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 8 ~~~il~~~-~~~---~i~~~i~SRc~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
..++++|+ ++. .+.+.++|||. ++.|.+|+.+....+|++.++.+++.++++.++.|+..+.||+|.....|.
T Consensus 228 k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~ 307 (440)
T PRK14088 228 KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAII 307 (440)
T ss_pred CeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHH
Confidence 35666664 433 46788999997 999999999999999999999889999999999999999999999888887
Q ss_pred HHHHh---CCCCcchhhHHhhhh
Q psy4285 81 SAATA---HADEVNEDTIFTLLV 100 (533)
Q Consensus 81 ~~~~~---~~~~i~~~~i~~~~~ 100 (533)
.+... .+..||.+.+.+++.
T Consensus 308 ~l~~~~~~~~~~it~~~a~~~L~ 330 (440)
T PRK14088 308 KLLVYKETTGEEVDLKEAILLLK 330 (440)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHH
Confidence 76432 345688888766654
No 423
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.43 E-value=0.0014 Score=64.64 Aligned_cols=138 Identities=19% Similarity=0.225 Sum_probs=74.5
Q ss_pred HHHHHHHHhhhchhhhhhhccccc----c-cCCCc-eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchh
Q psy4285 279 ITNILRWLLNESMDLCYKINRFID----E-NELPH-LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIG 352 (533)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~l~~~~~----~-~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 352 (533)
+..++.+...+..+....+.+++. . ..... ++++|+.|+|||++...+...+ +.. ......+.. ..
T Consensus 43 ~~~~L~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~-G~~-----~~~~~~~~~--~~ 114 (304)
T TIGR01613 43 WNGFLLETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLL-GDY-----ATTAVASLK--MN 114 (304)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHh-Chh-----hccCCcchh--hh
Confidence 445555555555555555544432 2 11122 7999999999999999887655 332 111011100 00
Q ss_pred HHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh--------------cCCCcEEEEEeCCCCCC---C
Q psy4285 353 IVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEK--------------FTTNVRFCIICNYLSKI---P 415 (533)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~--------------~~~~~~~I~~~n~~~~l---~ 415 (533)
...+ ..+.... -.+..+++.||++.-.....+.|..+... ......+|++||....+ +
T Consensus 115 ~~~~--~~f~~a~---l~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~~ 189 (304)
T TIGR01613 115 EFQE--HRFGLAR---LEGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGFD 189 (304)
T ss_pred hccC--CCchhhh---hcCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCCC
Confidence 0000 0000000 13567999999975322222334333321 13457799999987655 5
Q ss_pred hhhhccceeeeecC
Q psy4285 416 PAIQSRCTRFRFGP 429 (533)
Q Consensus 416 ~~l~sR~~~i~~~~ 429 (533)
.++.+|+..+.|..
T Consensus 190 ~a~~RR~~vi~f~~ 203 (304)
T TIGR01613 190 GGIKRRLRIIPFTK 203 (304)
T ss_pred hhheeeEEEEeccC
Confidence 68999998888753
No 424
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=97.41 E-value=0.00034 Score=62.68 Aligned_cols=83 Identities=12% Similarity=0.199 Sum_probs=65.5
Q ss_pred CCCCCCceEEEEEcC-CCC---cCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHH
Q psy4285 1 IEKFTTNVRFCIICN-YLS---KITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVL 76 (533)
Q Consensus 1 ~E~~~~~~~~il~~~-~~~---~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~ 76 (533)
++.|++++.+|+.++ ... ++..++...+.++.|.+++..++..|++..+.+.|+.+++++++.++...+||++.+.
T Consensus 85 l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~ 164 (172)
T PF06144_consen 85 LSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKKNGLKIDPDAAQYLIERVGNDLSLLQ 164 (172)
T ss_dssp TTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHHHHHHHHTT-HHHHH
T ss_pred HhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhChHHHHHH
Confidence 467888999998888 444 5788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy4285 77 NILQSAA 83 (533)
Q Consensus 77 ~~l~~~~ 83 (533)
+-++-++
T Consensus 165 ~EleKL~ 171 (172)
T PF06144_consen 165 NELEKLS 171 (172)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988764
No 425
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.39 E-value=0.001 Score=60.79 Aligned_cols=102 Identities=20% Similarity=0.332 Sum_probs=54.4
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhc---cc---------------CCCC
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST---KT---------------MHKS 370 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------------~~~~ 370 (533)
++|.||+|+||||++-.+|..+... .....++..+.......++++...+...-. .. ....
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 7899999999999999999887554 223334443332222222222221111000 00 0012
Q ss_pred CcEEEEEeCCCCCCH--HHHHHHHHHHHhc-CCCcEEEEEeCCC
Q psy4285 371 SYKLIILDEADAMTN--DAQNALRRIIEKF-TTNVRFCIICNYL 411 (533)
Q Consensus 371 ~~~vliiDE~d~l~~--~~~~~Ll~~le~~-~~~~~~I~~~n~~ 411 (533)
+.++++||=..+... +....+.++++.. +..+.+++.++..
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~ 126 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG 126 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC
Confidence 467999999988764 3344555555432 4456666665443
No 426
>PF13245 AAA_19: Part of AAA domain
Probab=97.37 E-value=0.00033 Score=53.14 Aligned_cols=24 Identities=50% Similarity=0.751 Sum_probs=17.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.+++.||||||||+++...+..+.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 367799999999966655555554
No 427
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.37 E-value=0.00091 Score=62.06 Aligned_cols=35 Identities=29% Similarity=0.509 Sum_probs=26.1
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCC
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNAS 346 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 346 (533)
+.++||||+|||+++..++...... +..++.++..
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e 49 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTE 49 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 7999999999999999998876443 3344444443
No 428
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.35 E-value=0.0076 Score=59.93 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=24.6
Q ss_pred cCCCceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 304 NELPHLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 304 ~~~~~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
++....+++||||||||++++.+++.+..
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44446899999999999999999998744
No 429
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.35 E-value=0.00021 Score=65.39 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=33.2
Q ss_pred CcEEEEEeCCCCCCHHHH------HHHHHHHHh-cCCCcEEEEEeCCCCCCChhhhccc
Q psy4285 371 SYKLIILDEADAMTNDAQ------NALRRIIEK-FTTNVRFCIICNYLSKIPPAIQSRC 422 (533)
Q Consensus 371 ~~~vliiDE~d~l~~~~~------~~Ll~~le~-~~~~~~~I~~~n~~~~l~~~l~sR~ 422 (533)
...++||||++...+... ....+.+.. +..+.-++++|..+..+++.++..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lv 137 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLV 137 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHH
Confidence 568999999997743322 223355543 4567889999999999999998765
No 430
>PRK13695 putative NTPase; Provisional
Probab=97.34 E-value=0.0016 Score=58.54 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=39.8
Q ss_pred CCcEEEEEeCCCCC---CHHHHHHHHHHHHhcCCCcEEEEEeCCCC--CCChhhhccc--eeeeecCCCHHHHHH
Q psy4285 370 SSYKLIILDEADAM---TNDAQNALRRIIEKFTTNVRFCIICNYLS--KIPPAIQSRC--TRFRFGPLDSSLIMS 437 (533)
Q Consensus 370 ~~~~vliiDE~d~l---~~~~~~~Ll~~le~~~~~~~~I~~~n~~~--~l~~~l~sR~--~~i~~~~~~~~~~~~ 437 (533)
.+++++++||+..+ +....+.+.++++ .+..+|++++... ...+.+.+|. ..+.+.+-+.+++..
T Consensus 95 ~~~~~lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~ 166 (174)
T PRK13695 95 EEADVIIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPF 166 (174)
T ss_pred CCCCEEEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHH
Confidence 36789999997654 3344556666663 3467888887643 3456676665 355555555444443
No 431
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.34 E-value=0.0023 Score=58.79 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.+++.||+|+||||++++++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 379999999999999999998874
No 432
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.0027 Score=64.04 Aligned_cols=127 Identities=15% Similarity=0.203 Sum_probs=64.6
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccc---cccCcceEEecCCCCCchhHHHHHHHH-------------HHhcccCCCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTK---AQFNAMVLELNASDDRGIGIVRDQIFQ-------------FASTKTMHKS 370 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 370 (533)
..++|+||+|+||||++..+|..+... .+....++..+.-......+++..... +...... ..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~-~~ 253 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ-SK 253 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH-hC
Confidence 348999999999999999999876422 111222333332111111111111000 0000000 14
Q ss_pred CcEEEEEeCCCCCCHHH--HHHHHHHHHhcC--CCcEEEEEeCCCCCCChhhhccc-----eeeeecCCCHHH
Q psy4285 371 SYKLIILDEADAMTNDA--QNALRRIIEKFT--TNVRFCIICNYLSKIPPAIQSRC-----TRFRFGPLDSSL 434 (533)
Q Consensus 371 ~~~vliiDE~d~l~~~~--~~~Ll~~le~~~--~~~~~I~~~n~~~~l~~~l~sR~-----~~i~~~~~~~~~ 434 (533)
+.++++||++++...+. ...+.+.++... ..+.+++.++.-..-...+..++ ..+.|..+++..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCCC
Confidence 57899999999986543 345566665432 24556665543322222333333 456666666544
No 433
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.33 E-value=0.001 Score=60.09 Aligned_cols=41 Identities=12% Similarity=0.344 Sum_probs=30.4
Q ss_pred CcEEEEEeCC-CCCCHHHHHHHHHHHHhc-CCCcEEEEEeCCC
Q psy4285 371 SYKLIILDEA-DAMTNDAQNALRRIIEKF-TTNVRFCIICNYL 411 (533)
Q Consensus 371 ~~~vliiDE~-d~l~~~~~~~Ll~~le~~-~~~~~~I~~~n~~ 411 (533)
.++++++||. +.|+++.....+..|.+. ..+...|++|...
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM 196 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM 196 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh
Confidence 5789999998 567999999988888653 2445666666543
No 434
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.33 E-value=9.3e-05 Score=71.51 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=63.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccC-------CCCCcEEEEEeCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTM-------HKSSYKLIILDEA 380 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~vliiDE~ 380 (533)
.+.+|||-|.|||.+.-.+-..+-........+-. -...+++.+......... .....+||+|||+
T Consensus 67 GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~-------FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF 139 (367)
T COG1485 67 GLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHR-------FMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEF 139 (367)
T ss_pred eEEEECCCCccHHHHHHHHHhhCCccccccccHHH-------HHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeee
Confidence 49999999999999999988876332210000000 001111111111110000 0134679999999
Q ss_pred CCCCHHHHHHHHHHHHh-cCCCcEEEEEeCCCC-----------CCC---hhhhccceeeeecCC
Q psy4285 381 DAMTNDAQNALRRIIEK-FTTNVRFCIICNYLS-----------KIP---PAIQSRCTRFRFGPL 430 (533)
Q Consensus 381 d~l~~~~~~~Ll~~le~-~~~~~~~I~~~n~~~-----------~l~---~~l~sR~~~i~~~~~ 430 (533)
.--+....-.|-+++++ ...++.+++|+|... ... ..|.++|.++.+..+
T Consensus 140 ~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~~ 204 (367)
T COG1485 140 EVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDGP 204 (367)
T ss_pred eecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheEEEEecCC
Confidence 76655444444444443 246788888888543 122 345567776666655
No 435
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.32 E-value=0.00048 Score=83.13 Aligned_cols=96 Identities=16% Similarity=0.213 Sum_probs=63.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHH-----------HHHHHhc-----------c
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQ-----------IFQFAST-----------K 365 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~-----------~ 365 (533)
..++.|+|||||||+++.+.+.+... +..+.-+ +++++....+.+. +...... .
T Consensus 448 v~ii~G~aGTGKTt~l~~l~~~~~~~---G~~V~~l-APTgrAA~~L~e~~g~~A~Ti~~~l~~l~~~~~~~tv~~fl~~ 523 (1960)
T TIGR02760 448 FIIINGFGGTGSTEIAQLLLHLASEQ---GYEIQII-TAGSLSAQELRQKIPRLASTFITWVKNLFNDDQDHTVQGLLDK 523 (1960)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHhc---CCeEEEE-eCCHHHHHHHHHHhcchhhhHHHHHHhhcccccchhHHHhhcc
Confidence 47999999999999999999876333 3344433 4443433333332 1110000 0
Q ss_pred cCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeC
Q psy4285 366 TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409 (533)
Q Consensus 366 ~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n 409 (533)
.....+.++|||||+++++......|++..+. .+.++|++++
T Consensus 524 ~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~--~garvVlvGD 565 (1960)
T TIGR02760 524 SSPFSNKDIFVVDEANKLSNNELLKLIDKAEQ--HNSKLILLND 565 (1960)
T ss_pred cCCCCCCCEEEEECCCCCCHHHHHHHHHHHhh--cCCEEEEEcC
Confidence 00013578999999999999998899887753 5688999885
No 436
>PRK14974 cell division protein FtsY; Provisional
Probab=97.30 E-value=0.0046 Score=61.19 Aligned_cols=25 Identities=48% Similarity=0.537 Sum_probs=22.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
.++|+||||+||||++..+|..+..
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~ 166 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKK 166 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3899999999999999999987643
No 437
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=97.29 E-value=0.002 Score=64.18 Aligned_cols=102 Identities=16% Similarity=0.114 Sum_probs=80.8
Q ss_pred CCCCCCceEEEEEcCCCCc---Cchhhhcc--ceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSK---ITPAIQSR--CTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKV 75 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~---i~~~i~SR--c~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a 75 (533)
+|.||+.+.+|++.+...+ +...+... ..++.|.+++..++..|++..+++.|+.+++++++.++...+||+..+
T Consensus 95 l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l 174 (328)
T PRK08487 95 CEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNAREALELLQERAKELGLDIDQNALNHLYFIHNEDLALA 174 (328)
T ss_pred HhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcHHHHH
Confidence 3667888877775544432 22222222 568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcchhhHHhhhhhhc
Q psy4285 76 LNILQSAATAHADEVNEDTIFTLLVSRV 103 (533)
Q Consensus 76 ~~~l~~~~~~~~~~i~~~~i~~~~~~~~ 103 (533)
.+-|+-+....+ .||.+.|..++....
T Consensus 175 ~~ELeKL~ly~~-~It~edV~~~v~~~~ 201 (328)
T PRK08487 175 ANELEKLAILNE-PITLKDIQELVFGLG 201 (328)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHhcccc
Confidence 999999987543 799999877665543
No 438
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.28 E-value=0.00044 Score=65.40 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.4
Q ss_pred eeEeCCCCCChHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~ 329 (533)
+++.|+||+|||++++.++..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 478999999999999999987
No 439
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.28 E-value=0.0024 Score=60.40 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=20.1
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
++++|+||+|||+++..++...
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7999999999999999998764
No 440
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.27 E-value=0.012 Score=59.01 Aligned_cols=71 Identities=6% Similarity=0.095 Sum_probs=44.7
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHh------cCCCcEEEEEeCCCC---CCChhhhcc-ceeeeecCCCHHHHHHHhh
Q psy4285 371 SYKLIILDEADAMTNDAQNALRRIIEK------FTTNVRFCIICNYLS---KIPPAIQSR-CTRFRFGPLDSSLIMSRLD 440 (533)
Q Consensus 371 ~~~vliiDE~d~l~~~~~~~Ll~~le~------~~~~~~~I~~~n~~~---~l~~~l~sR-~~~i~~~~~~~~~~~~~l~ 440 (533)
...|++||.+..-... .+.++..|-+ ...-.++|+.|+... .|..++=+| |..+.+...+++..+.++.
T Consensus 148 ~~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 4679999999765433 3344443322 134467888886554 455566555 4678888888777776665
Q ss_pred cC
Q psy4285 441 YD 442 (533)
Q Consensus 441 ~~ 442 (533)
..
T Consensus 227 ~~ 228 (431)
T PF10443_consen 227 SQ 228 (431)
T ss_pred HH
Confidence 54
No 441
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.27 E-value=0.0012 Score=64.96 Aligned_cols=134 Identities=24% Similarity=0.297 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhhhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccccCcceEE-ecCCCCCchhH
Q psy4285 276 KTEITNILRWLLNESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLE-LNASDDRGIGI 353 (533)
Q Consensus 276 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~-~~~~~~~~~~~ 353 (533)
-+.+..++...-..--.....++.+++.-...+ ++|+|||+||||..+..+.+-+ +..++. +|....
T Consensus 231 Wk~Iv~FLryQ~v~~i~Fl~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl------~GkViSf~Ns~Sh----- 299 (432)
T PF00519_consen 231 WKPIVKFLRYQGVEFISFLIALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFL------KGKVISFVNSKSH----- 299 (432)
T ss_dssp CHHHHHHHHHTT--HHHHHHHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHH------TSEEE-GGGTTSC-----
T ss_pred HHHHHHHHhhcCccHHHHHHHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHh------CCEEEEecCCCCc-----
Confidence 344555554332222333455666776543344 8999999999999999999988 333443 333221
Q ss_pred HHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHH-HHHHHHHHHhcC-------------CCcEEEEEeCCCCCC---Ch
Q psy4285 354 VRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA-QNALRRIIEKFT-------------TNVRFCIICNYLSKI---PP 416 (533)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~-~~~Ll~~le~~~-------------~~~~~I~~~n~~~~l---~~ 416 (533)
|--.+. ...++-+|||+-.-.=.- -..|..+++..+ .-..+++|||..-.- ..
T Consensus 300 -------FWLqPL---~d~Ki~llDDAT~~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~ 369 (432)
T PF00519_consen 300 -------FWLQPL---ADAKIALLDDATYPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWK 369 (432)
T ss_dssp -------GGGGGG---CT-SSEEEEEE-HHHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCH
T ss_pred -------ccccch---hcCcEEEEcCCcccHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhh
Confidence 111111 356799999984321111 133566666321 113478888855433 44
Q ss_pred hhhccceeeeecCC
Q psy4285 417 AIQSRCTRFRFGPL 430 (533)
Q Consensus 417 ~l~sR~~~i~~~~~ 430 (533)
-|.||...+.|+.+
T Consensus 370 YLhSRi~~f~F~n~ 383 (432)
T PF00519_consen 370 YLHSRITCFEFPNP 383 (432)
T ss_dssp HHCTTEEEEE--S-
T ss_pred hhhheEEEEEcCCc
Confidence 67789988888654
No 442
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.26 E-value=0.0022 Score=57.20 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++++||||+|||++|..++..+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 37999999999999999999875
No 443
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.0016 Score=59.98 Aligned_cols=53 Identities=25% Similarity=0.341 Sum_probs=41.7
Q ss_pred CCcEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCcEEEEEeCCCCCCChhhhccc
Q psy4285 370 SSYKLIILDE-ADAMTNDAQNALRRIIEK---FTTNVRFCIICNYLSKIPPAIQSRC 422 (533)
Q Consensus 370 ~~~~vliiDE-~d~l~~~~~~~Ll~~le~---~~~~~~~I~~~n~~~~l~~~l~sR~ 422 (533)
..+.+||+|| +..++....+.|++.+++ .+....++++|...+.++|-+-.++
T Consensus 188 ~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l 244 (257)
T COG1119 188 KDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL 244 (257)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE
Confidence 4578999999 467888888888888875 3456789999999998888776654
No 444
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.25 E-value=0.00062 Score=60.99 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=34.1
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy4285 370 SSYKLIILDEA-DAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414 (533)
Q Consensus 370 ~~~~vliiDE~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l 414 (533)
..++++++||- ..++......+.+.+.+......+|++|+....+
T Consensus 113 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 113 RDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 46789999996 4778888888888887655557788888776533
No 445
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.25 E-value=0.0025 Score=65.47 Aligned_cols=93 Identities=22% Similarity=0.298 Sum_probs=72.1
Q ss_pred ceEEEEEcCCCC---cCchhhhccc--eeEEeCCCCHHHHHHHHHHHHhhc--CCCCCHHHHHHHHHhc---CCCHHHHH
Q psy4285 7 NVRFCIICNYLS---KITPAIQSRC--TRFRFGPLDSSLIMSRLDYVIEQE--KVNVTPDGKKAIIDLS---DGDMRKVL 76 (533)
Q Consensus 7 ~~~~il~~~~~~---~i~~~i~SRc--~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~---~g~~r~a~ 76 (533)
++.+|+++|+.. .+.|.++||+ ..+.|+|++.+++.++|+..++.. ...+++++++.+++.+ .||+|+|+
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~ 252 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAI 252 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHH
Confidence 677899988763 5778899997 578999999999999998876532 2357889999998888 89999999
Q ss_pred HHHHHHHHh----CCCCcchhhHHhhh
Q psy4285 77 NILQSAATA----HADEVNEDTIFTLL 99 (533)
Q Consensus 77 ~~l~~~~~~----~~~~i~~~~i~~~~ 99 (533)
+++..+... +...|+.+.+...+
T Consensus 253 ~ll~~a~~~a~~~~~~~I~~~~v~~a~ 279 (394)
T PRK00411 253 DLLRRAGLIAEREGSRKVTEEDVRKAY 279 (394)
T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 999876432 23458887775433
No 446
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.25 E-value=0.0047 Score=57.55 Aligned_cols=22 Identities=45% Similarity=0.738 Sum_probs=21.0
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
++++||||+||||+++.+|+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
No 447
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.25 E-value=0.00055 Score=64.85 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=22.7
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
..++|+||+|+||||+++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 35999999999999999999987643
No 448
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.25 E-value=0.0058 Score=55.29 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.7
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
++++||||+||||+|+.+++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999999987
No 449
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.23 E-value=0.0055 Score=53.89 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=27.0
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEec
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELN 344 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 344 (533)
.+++|.|++|+||||+.+.+|+.+ +..|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L------~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL------NLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc------CCCcccch
Confidence 368999999999999999999998 56665543
No 450
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.22 E-value=0.0012 Score=67.85 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=59.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc-cccccCcceEEecCCCCCc--hhHHHHHHH-------------HHHhcccCCCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY-TKAQFNAMVLELNASDDRG--IGIVRDQIF-------------QFASTKTMHKSS 371 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------------~~~~~~~~~~~~ 371 (533)
.++|.||+|+||||++..+|..+. ... +..+..++....+. ...++.... .+...... ...
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~--g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~~ 299 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYG--KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LRD 299 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hCC
Confidence 489999999999999999998774 222 23333333332221 111111000 00000000 135
Q ss_pred cEEEEEeCCCCCC--HHHHHHHHHHHHh--cCCCcEEEEEeCCCCCCChhhhccc
Q psy4285 372 YKLIILDEADAMT--NDAQNALRRIIEK--FTTNVRFCIICNYLSKIPPAIQSRC 422 (533)
Q Consensus 372 ~~vliiDE~d~l~--~~~~~~Ll~~le~--~~~~~~~I~~~n~~~~l~~~l~sR~ 422 (533)
++++|||...+.. ......|.++++. .+....+++.++....-...+.++|
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHF 354 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHh
Confidence 7899999987754 4455667777762 2334566666655433333333433
No 451
>PRK08118 topology modulation protein; Reviewed
Probab=97.22 E-value=0.00032 Score=62.47 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=21.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.||||+||||+|+.+++.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 452
>PTZ00202 tuzin; Provisional
Probab=97.22 E-value=0.019 Score=57.95 Aligned_cols=37 Identities=8% Similarity=0.035 Sum_probs=29.1
Q ss_pred hhhhccceeeeecCCCHHHHHHHhhcC--HHHHHHHHHH
Q psy4285 416 PAIQSRCTRFRFGPLDSSLIMSRLDYD--DISFFNIIIW 452 (533)
Q Consensus 416 ~~l~sR~~~i~~~~~~~~~~~~~l~~~--~~~~~~ll~~ 452 (533)
...+-|++.+.+++.+.+|......+. +-++..+++.
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~~dal~l~~fve~ 445 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHAIDALSLEHFVDV 445 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhccchHHhhHHHHh
Confidence 345568899999999999999999998 5566666654
No 453
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.20 E-value=0.0012 Score=59.71 Aligned_cols=43 Identities=14% Similarity=0.273 Sum_probs=32.2
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC--CcEEEEEeCCCC
Q psy4285 370 SSYKLIILDEAD-AMTNDAQNALRRIIEKFTT--NVRFCIICNYLS 412 (533)
Q Consensus 370 ~~~~vliiDE~d-~l~~~~~~~Ll~~le~~~~--~~~~I~~~n~~~ 412 (533)
..++++++||.- .++......+.+.+.+... +..+|+++....
T Consensus 114 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 114 QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 457899999964 7788888888888876433 467788887655
No 454
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.19 E-value=0.0013 Score=58.29 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=56.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCc--h-hHHHH-----------HHHHHHhcccCCCCCcE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG--I-GIVRD-----------QIFQFASTKTMHKSSYK 373 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~-~~~~~-----------~~~~~~~~~~~~~~~~~ 373 (533)
.+.+.||.|+||||+.+.++....... + -+.++..+... . ...+. ..+...-... .-..++
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~~--G--~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~lara-l~~~p~ 102 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKPDS--G--EILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARA-LARNAR 102 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC--e--EEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHH-HhcCCC
Confidence 588999999999999999987542111 1 12222211100 0 00000 0001000000 124578
Q ss_pred EEEEeCCC-CCCHHHHHHHHHHHHhcC-CCcEEEEEeCCCC
Q psy4285 374 LIILDEAD-AMTNDAQNALRRIIEKFT-TNVRFCIICNYLS 412 (533)
Q Consensus 374 vliiDE~d-~l~~~~~~~Ll~~le~~~-~~~~~I~~~n~~~ 412 (533)
++++||.. .++......+.+.+.+.. .+..+|++|....
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 99999974 678888888888886542 3566777776544
No 455
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.19 E-value=0.0011 Score=64.95 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=58.7
Q ss_pred CceEEEEEcC------------CCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcC-CCH
Q psy4285 6 TNVRFCIICN------------YLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSD-GDM 72 (533)
Q Consensus 6 ~~~~~il~~~------------~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-g~~ 72 (533)
-...+||+|| .++-|..-+.+||.+++..|.+.+|+.++|+--|+.|++.+++++++.+...+. -++
T Consensus 306 ~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SL 385 (398)
T PF06068_consen 306 LSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSL 385 (398)
T ss_dssp T--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-H
T ss_pred CCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccH
Confidence 3456888887 788899999999999999999999999999999999999999999999877654 789
Q ss_pred HHHHHHHHHHH
Q psy4285 73 RKVLNILQSAA 83 (533)
Q Consensus 73 r~a~~~l~~~~ 83 (533)
|.|++++..+.
T Consensus 386 RYAiqLi~~a~ 396 (398)
T PF06068_consen 386 RYAIQLITPAS 396 (398)
T ss_dssp HHHHHCHHHHH
T ss_pred HHHHHhhhhhh
Confidence 99999997764
No 456
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.18 E-value=0.00058 Score=61.65 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=34.4
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy4285 370 SSYKLIILDEA-DAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414 (533)
Q Consensus 370 ~~~~vliiDE~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l 414 (533)
.+++++++||. ..++......+.+.+.+...+..+|++|.....+
T Consensus 115 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 115 QDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 46789999997 4778888888888887654567788888766543
No 457
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.18 E-value=0.0031 Score=59.29 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=19.6
Q ss_pred eeEeCCCCCChHHHHHHHHHHHc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~ 331 (533)
++++||||||||+++..++..+.
T Consensus 27 ~~i~G~~G~GKTtl~~~~~~~~~ 49 (230)
T PRK08533 27 ILIEGDESTGKSILSQRLAYGFL 49 (230)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999877766553
No 458
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.18 E-value=0.00081 Score=61.21 Aligned_cols=41 Identities=22% Similarity=0.430 Sum_probs=24.6
Q ss_pred CcEEEEEeCCCCCCH-HHHHHHHHHHHhcCCCcEEEEEeCCC
Q psy4285 371 SYKLIILDEADAMTN-DAQNALRRIIEKFTTNVRFCIICNYL 411 (533)
Q Consensus 371 ~~~vliiDE~d~l~~-~~~~~Ll~~le~~~~~~~~I~~~n~~ 411 (533)
..+++|+||++.+.. .....+..++...+...++++.|..+
T Consensus 129 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~ 170 (201)
T smart00487 129 NVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATP 170 (201)
T ss_pred HCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCC
Confidence 356999999999986 44444444444333445555555444
No 459
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.17 E-value=0.0026 Score=64.08 Aligned_cols=34 Identities=35% Similarity=0.578 Sum_probs=25.6
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecC
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNA 345 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 345 (533)
++++|+||+|||+++..++..+... +..++.++.
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~ 118 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSG 118 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEC
Confidence 7999999999999999999876433 234444443
No 460
>PLN02674 adenylate kinase
Probab=97.16 E-value=0.0048 Score=58.07 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=22.2
Q ss_pred CceeEeCCCCCChHHHHHHHHHHH
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l 330 (533)
++++|.||||+||||.++.+++.+
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 459999999999999999999986
No 461
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.16 E-value=0.0046 Score=53.56 Aligned_cols=94 Identities=16% Similarity=0.207 Sum_probs=56.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCC------CCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNAS------DDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
.+.+.||+|+||||+.+.++....... +. +.++.. ...+....+.. . .+..- ...++++++||-.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~--G~--i~~~~~~~i~~~~~lS~G~~~rv-~-laral---~~~p~illlDEP~ 98 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDE--GI--VTWGSTVKIGYFEQLSGGEKMRL-A-LAKLL---LENPNLLLLDEPT 98 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCc--eE--EEECCeEEEEEEccCCHHHHHHH-H-HHHHH---hcCCCEEEEeCCc
Confidence 478999999999999999987652211 11 111110 00111121111 1 11111 1356799999974
Q ss_pred -CCCHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q psy4285 382 -AMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412 (533)
Q Consensus 382 -~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~ 412 (533)
.++......+.+.+.+. +..++++++..+
T Consensus 99 ~~LD~~~~~~l~~~l~~~--~~til~~th~~~ 128 (144)
T cd03221 99 NHLDLESIEALEEALKEY--PGTVILVSHDRY 128 (144)
T ss_pred cCCCHHHHHHHHHHHHHc--CCEEEEEECCHH
Confidence 78888888888888765 356777776654
No 462
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.13 E-value=0.0012 Score=59.14 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=32.0
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhcC-CCcEEEEEeCCCC
Q psy4285 370 SSYKLIILDEA-DAMTNDAQNALRRIIEKFT-TNVRFCIICNYLS 412 (533)
Q Consensus 370 ~~~~vliiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~I~~~n~~~ 412 (533)
..++++++||. ..++......+.+.+.+.. .+..+|++|....
T Consensus 113 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 113 GNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 46789999996 4778888888888876542 3567888887654
No 463
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.12 E-value=0.0033 Score=60.06 Aligned_cols=113 Identities=14% Similarity=0.065 Sum_probs=77.2
Q ss_pred CCcEEEEEe--CCCCCCChhhhccceeeeecCCCHHHHHHHhhcC--------------------------HHHHHHHHH
Q psy4285 400 TNVRFCIIC--NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD--------------------------DISFFNIII 451 (533)
Q Consensus 400 ~~~~~I~~~--n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~--------------------------~~~~~~ll~ 451 (533)
..+.+|.+| |+...+.++|+|||..+.|.+++.+++..++.+. .+|.+..++
T Consensus 7 G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN 86 (300)
T PRK14700 7 GKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILN 86 (300)
T ss_pred CcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHH
Confidence 345666665 7777999999999999999999999998888765 233333333
Q ss_pred HHHHH-----------------HHHH-------HhcCCCHHHHHHHHHHHHHhcCCChhHHHHHHHHHH-------HHHH
Q psy4285 452 WYIKI-----------------QEIK-------IEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMS-------DIEY 500 (533)
Q Consensus 452 ~~~~l-----------------~~l~-------~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 500 (533)
..+.. .+.. ...|-.+.|+++.+++.++.++ ++...+++.++- ++.+
T Consensus 87 ~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSD--pDAAlYyLArml~~GEDp~~IaR 164 (300)
T PRK14700 87 LLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTD--PDAAIFWLSVMLDNGVDPLVIAR 164 (300)
T ss_pred HHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCC--ccHHHHHHHHHHHcCCCHHHHHH
Confidence 32221 1111 1134567889999999999877 333445554443 6788
Q ss_pred HHhCCCChHHHHHH
Q psy4285 501 RLAAGTSEKIQLSA 514 (533)
Q Consensus 501 ~l~~g~~~~~~l~~ 514 (533)
||..-+++.+++++
T Consensus 165 RLii~AsEDIGlAd 178 (300)
T PRK14700 165 RMLCIASEDIGNAD 178 (300)
T ss_pred HHHHHHHhhccCCC
Confidence 99998998888654
No 464
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.12 E-value=0.002 Score=60.56 Aligned_cols=25 Identities=40% Similarity=0.644 Sum_probs=21.9
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTK 333 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~ 333 (533)
++++||||+|||+++..++......
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~ 50 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKN 50 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7999999999999999999876433
No 465
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.10 E-value=0.0066 Score=60.49 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=31.6
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhc--CCCcEEEEEeCC
Q psy4285 370 SSYKLIILDEADAMTNDAQNALRRIIEKF--TTNVRFCIICNY 410 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~~~~~Ll~~le~~--~~~~~~I~~~n~ 410 (533)
...-|+||||+|++.++....+++.+... -+++.+|++.+.
T Consensus 171 ~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~ 213 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDP 213 (325)
T ss_pred CceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecH
Confidence 45679999999999998887777776532 257888888763
No 466
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.08 E-value=0.0023 Score=66.36 Aligned_cols=92 Identities=12% Similarity=0.160 Sum_probs=74.9
Q ss_pred EEEEEcCCCC----cCchhhhccc---eeEEeCCCCHHHHHHHHHHHHhhcCC--CCCHHHHHHHHHhcCCCHHHHHHHH
Q psy4285 9 RFCIICNYLS----KITPAIQSRC---TRFRFGPLDSSLIMSRLDYVIEQEKV--NVTPDGKKAIIDLSDGDMRKVLNIL 79 (533)
Q Consensus 9 ~~il~~~~~~----~i~~~i~SRc---~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~g~~r~a~~~l 79 (533)
.+|++++.+- .+.+-|+||+ .++.+++|+.++...+|++.++..++ .+++++++.|+..++||+|.+++.|
T Consensus 241 ~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 241 QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred cEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 5677776432 3458899998 59999999999999999999987775 6999999999999999999999999
Q ss_pred HHHHHh--C---CCCcchhhHHhhhh
Q psy4285 80 QSAATA--H---ADEVNEDTIFTLLV 100 (533)
Q Consensus 80 ~~~~~~--~---~~~i~~~~i~~~~~ 100 (533)
..+... . +..||.+.+.+++.
T Consensus 321 ~~l~~~a~~~~~~~~it~~~v~~~l~ 346 (450)
T PRK14087 321 SRLNFWSQQNPEEKIITIEIVSDLFR 346 (450)
T ss_pred HHHHHHHhcccCCCCCCHHHHHHHHh
Confidence 888532 1 24588888776654
No 467
>PRK03839 putative kinase; Provisional
Probab=97.06 E-value=0.00056 Score=61.84 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=21.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.|+||+||||+++.+|+.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999998
No 468
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.06 E-value=0.0034 Score=59.49 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=24.9
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecC
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNA 345 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 345 (533)
++++||||+|||+++..++...... +...+.++.
T Consensus 24 ~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs~ 57 (237)
T TIGR03877 24 VLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVAL 57 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEEe
Confidence 8999999999999999887664332 344444443
No 469
>PRK00625 shikimate kinase; Provisional
Probab=97.06 E-value=0.00059 Score=60.99 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=25.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEec
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELN 344 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 344 (533)
+++|+|.||+||||+++.+|+.+ +..++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l------~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL------SLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh------CCCEEEhh
Confidence 48999999999999999999998 55555543
No 470
>PF13479 AAA_24: AAA domain
Probab=97.06 E-value=0.0005 Score=63.93 Aligned_cols=63 Identities=22% Similarity=0.447 Sum_probs=38.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCC-------------CCCchhHHHHHHHHHHhcccCCCCCcEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNAS-------------DDRGIGIVRDQIFQFASTKTMHKSSYKL 374 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v 374 (533)
.+++||+||+|||+++..+-+-+ ++.+... ...+...+.+.+..+... ...+++
T Consensus 5 ~~lIyG~~G~GKTt~a~~~~k~l---------~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~----~~~y~t 71 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASLPKPL---------FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEED----EADYDT 71 (213)
T ss_pred EEEEECCCCCCHHHHHHhCCCeE---------EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhc----cCCCCE
Confidence 38999999999999998883332 2222222 112333444444333222 257899
Q ss_pred EEEeCCCCC
Q psy4285 375 IILDEADAM 383 (533)
Q Consensus 375 liiDE~d~l 383 (533)
||||-++.+
T Consensus 72 iVIDsis~~ 80 (213)
T PF13479_consen 72 IVIDSISWL 80 (213)
T ss_pred EEEECHHHH
Confidence 999988665
No 471
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.05 E-value=0.00067 Score=60.85 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|+|+||+||||+|+.+++.+
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998
No 472
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.05 E-value=0.0018 Score=59.53 Aligned_cols=52 Identities=21% Similarity=0.354 Sum_probs=34.1
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhc--CCCcEEEEEeCCCCCCChhhhccc
Q psy4285 370 SSYKLIILDEA-DAMTNDAQNALRRIIEKF--TTNVRFCIICNYLSKIPPAIQSRC 422 (533)
Q Consensus 370 ~~~~vliiDE~-d~l~~~~~~~Ll~~le~~--~~~~~~I~~~n~~~~l~~~l~sR~ 422 (533)
..+++||+||. .+++...|..+++++.+- ..+..++++|.... +..-+-+|+
T Consensus 158 ~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi 212 (252)
T COG1124 158 PEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRI 212 (252)
T ss_pred cCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhhe
Confidence 45889999996 567788888777776532 34467788876543 233344454
No 473
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.05 E-value=0.0034 Score=65.05 Aligned_cols=34 Identities=35% Similarity=0.543 Sum_probs=25.6
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecC
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNA 345 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 345 (533)
++++|+||+|||+++..++...... +..+++++.
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~ 116 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSG 116 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEc
Confidence 7999999999999999999876422 334444443
No 474
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.04 E-value=0.0037 Score=60.05 Aligned_cols=87 Identities=21% Similarity=0.295 Sum_probs=46.3
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEec-------CC---CCCchhHHHHHHHHHHhcccCCCCCcEEEE
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELN-------AS---DDRGIGIVRDQIFQFASTKTMHKSSYKLII 376 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~vli 376 (533)
|-++++|.||+||||+|+.+.+.+-.. +..+..++ .. +....+..|..++....... +...++|
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~---~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l---s~~~iVI 75 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK---GKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL---SKDTIVI 75 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT---T--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH---TT-SEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc---CCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh---ccCeEEE
Confidence 458999999999999999999987442 22232222 11 22334555555544333221 3447999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCC
Q psy4285 377 LDEADAMTNDAQNALRRIIEKFTT 400 (533)
Q Consensus 377 iDE~d~l~~~~~~~Ll~~le~~~~ 400 (533)
+|+..++ ......|+.+=.....
T Consensus 76 ~Dd~nYi-Kg~RYelyclAr~~~~ 98 (270)
T PF08433_consen 76 LDDNNYI-KGMRYELYCLARAYGT 98 (270)
T ss_dssp E-S---S-HHHHHHHHHHHHHTT-
T ss_pred EeCCchH-HHHHHHHHHHHHHcCC
Confidence 9998877 4556677776555443
No 475
>PRK13947 shikimate kinase; Provisional
Probab=97.04 E-value=0.00069 Score=60.67 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=22.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
++++.|+||+||||+++.+|+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999998
No 476
>PRK13808 adenylate kinase; Provisional
Probab=97.04 E-value=0.0069 Score=59.51 Aligned_cols=23 Identities=35% Similarity=0.699 Sum_probs=21.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|+||||+||||+++.|++.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999986
No 477
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.03 E-value=0.001 Score=66.18 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=24.2
Q ss_pred cCCCceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 304 NELPHLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 304 ~~~~~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
+.....++.||||+||||+++.+++.+..
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 34345899999999999999999988754
No 478
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.03 E-value=0.0046 Score=72.23 Aligned_cols=128 Identities=18% Similarity=0.193 Sum_probs=64.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEe---cCCC--C-------Cc--hhHHHHHHHHHHhc---------
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLEL---NASD--D-------RG--IGIVRDQIFQFAST--------- 364 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~---~~~~--~-------~~--~~~~~~~~~~~~~~--------- 364 (533)
.+-++|++|+||||+|++++..+..... +..++.. .... . .. .....+.+......
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~~l~~~F~-g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~ 287 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFSRLSRQFQ-SSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLG 287 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHHHHhhcCC-eEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHH
Confidence 4789999999999999999887644321 1111110 0000 0 00 00001111111100
Q ss_pred --ccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccc-eeeeecCCCHHHHHHHhhc
Q psy4285 365 --KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRC-TRFRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 365 --~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~ 441 (533)
......++-+||+|+++.. ...+.|....+....+.++|+||.....+.. ..+ ..+....++.++..+.+..
T Consensus 288 ~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~---~~~~~~~~v~~l~~~ea~~LF~~ 362 (1153)
T PLN03210 288 AMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRA---HGIDHIYEVCLPSNELALEMFCR 362 (1153)
T ss_pred HHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHh---cCCCeEEEecCCCHHHHHHHHHH
Confidence 0001235678999998753 3334444333333456788888875432111 111 3566667777766666544
No 479
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.02 E-value=0.0042 Score=54.69 Aligned_cols=96 Identities=19% Similarity=0.240 Sum_probs=56.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC-----------------CchhHHHHHHHHHHhcccCCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD-----------------RGIGIVRDQIFQFASTKTMHKS 370 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 370 (533)
.+.+.||.|+||||+.++++..+.... .-+.++.... .+....+.. . ++... ..
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~~~----G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~-~-l~~~l---~~ 97 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKPTS----GEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRV-A-LARAL---LL 97 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCc----cEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHH-H-HHHHH---hc
Confidence 488999999999999999987652211 1122222110 011111111 0 11110 13
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC-CcEEEEEeCCCC
Q psy4285 371 SYKLIILDEAD-AMTNDAQNALRRIIEKFTT-NVRFCIICNYLS 412 (533)
Q Consensus 371 ~~~vliiDE~d-~l~~~~~~~Ll~~le~~~~-~~~~I~~~n~~~ 412 (533)
.++++++||.. .++......+.+.+.+... +..+++++....
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 141 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46899999986 6778888888888765432 356777876654
No 480
>PRK05907 hypothetical protein; Provisional
Probab=97.02 E-value=0.0091 Score=58.65 Aligned_cols=101 Identities=6% Similarity=0.052 Sum_probs=78.0
Q ss_pred CCCCCCceEEE-EEcCCCC---cCchhhhccceeE----EeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhc-CCC
Q psy4285 1 IEKFTTNVRFC-IICNYLS---KITPAIQSRCTRF----RFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLS-DGD 71 (533)
Q Consensus 1 ~E~~~~~~~~i-l~~~~~~---~i~~~i~SRc~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~g~ 71 (533)
+|+||+.+.++ ++.+ .. ++-..|. .+..+ .|+++.+.++.+|+.+.++++|..+++++++.++..+ +||
T Consensus 93 l~np~~~~~liv~~~~-~d~~kkl~K~i~-k~~~v~~~~e~~~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~n 170 (311)
T PRK05907 93 ARNPNPHLTLFLFTTK-QECFSSLSKKLS-SALCLSLFGEWFADRDKRIAQLLIQRAKELGISCSLGLASLFVSKFPQTG 170 (311)
T ss_pred HhCCCCCeEEEEEEec-ccHHHHHHHHHh-hcceeccccccCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCC
Confidence 47888875555 5552 22 2334454 35555 8999999999999999999999999999999999999 699
Q ss_pred HHHHHHHHHHHHHh-C-CCCcchhhHHhhhhhhc
Q psy4285 72 MRKVLNILQSAATA-H-ADEVNEDTIFTLLVSRV 103 (533)
Q Consensus 72 ~r~a~~~l~~~~~~-~-~~~i~~~~i~~~~~~~~ 103 (533)
+..+.+-++-+... . +..||.+.|..++....
T Consensus 171 L~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~ 204 (311)
T PRK05907 171 LFEILSEFQKLLCQMGKKESLEASDIQSFVVKKE 204 (311)
T ss_pred HHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcc
Confidence 99999999998775 3 34599999876655433
No 481
>PRK14527 adenylate kinase; Provisional
Probab=97.01 E-value=0.0064 Score=55.49 Aligned_cols=23 Identities=43% Similarity=0.771 Sum_probs=21.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.||||+||||+++.+++.+
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
No 482
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.99 E-value=0.0067 Score=54.43 Aligned_cols=100 Identities=18% Similarity=0.228 Sum_probs=55.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccc---c-CcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCC-C
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQ---F-NAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEAD-A 382 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d-~ 382 (533)
.+.+.||.|+||||+.+.++..+....+ + +..+..+......+...-+ .+. ++.. ....++++++||-- .
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~q-rv~-lara---l~~~p~lllLDEPts~ 101 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQ-RVA-IAAA---LLRNATFYLFDEPSAY 101 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHH-HHH-HHHH---HhcCCCEEEEECCccc
Confidence 4789999999999999999876422110 0 0001111110001111111 111 1111 11356899999974 6
Q ss_pred CCHHHHHHHHHHHHhcC-C-CcEEEEEeCCCC
Q psy4285 383 MTNDAQNALRRIIEKFT-T-NVRFCIICNYLS 412 (533)
Q Consensus 383 l~~~~~~~Ll~~le~~~-~-~~~~I~~~n~~~ 412 (533)
++......+.+.+.+.. . +..+|++|....
T Consensus 102 LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 133 (177)
T cd03222 102 LDIEQRLNAARAIRRLSEEGKKTALVVEHDLA 133 (177)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 78888888777776532 2 256777776543
No 483
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.99 E-value=0.0039 Score=57.69 Aligned_cols=23 Identities=43% Similarity=0.739 Sum_probs=20.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.||+||||||+.+.|-+.+
T Consensus 29 f~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 47899999999999999887654
No 484
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.99 E-value=0.0081 Score=53.43 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=19.3
Q ss_pred eeEeCCCCCChHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~ 329 (533)
++++|+||+|||++|..++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 589999999999999999876
No 485
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.99 E-value=0.011 Score=51.20 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.7
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
+.+.|+||+||||+|+.+++.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999987
No 486
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.98 E-value=0.00046 Score=59.68 Aligned_cols=22 Identities=41% Similarity=0.853 Sum_probs=20.5
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
+++.||||+||||+|+.+++.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 6899999999999999999876
No 487
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.98 E-value=0.0019 Score=78.04 Aligned_cols=99 Identities=17% Similarity=0.233 Sum_probs=58.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH---ccccccCcceEEecCCCCCc----------hhHHHHHHHHHHh-cccCCCCCcE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL---YTKAQFNAMVLELNASDDRG----------IGIVRDQIFQFAS-TKTMHKSSYK 373 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l---~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~~~~~~~~~~ 373 (533)
.+++.|++||||||+.+.+.+.+ .... +..++-+ +++++. ...+...+..+.. ..........
T Consensus 1038 ~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~--g~~v~gl-ApT~~Aa~~L~~~g~~a~Ti~s~l~~~~~~~~~~~~~~~~ 1114 (1960)
T TIGR02760 1038 FVAVQGLAGVGKTTMLESRYKPVLQAFESE--QLQVIGL-APTHEAVGELKSAGVQAQTLDSFLTDISLYRNSGGDFRNT 1114 (1960)
T ss_pred EEEEEeCCCCCHHHhHHHHHHHHHHHHHhc--CCeEEEE-eChHHHHHHHHhcCCchHhHHHHhcCcccccccCCCCccc
Confidence 37899999999999995443322 1111 2334333 222222 2233322211100 0000123568
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCC
Q psy4285 374 LIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411 (533)
Q Consensus 374 vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~ 411 (533)
|+||||+++++......|++..+. .+.++|++++..
T Consensus 1115 v~ivDEasMv~~~~~~~l~~~~~~--~~ak~vlvGD~~ 1150 (1960)
T TIGR02760 1115 LFILDESSMVSNFQLTHATELVQK--SGSRAVSLGDIA 1150 (1960)
T ss_pred EEEEEccccccHHHHHHHHHhccC--CCCEEEEeCChh
Confidence 999999999999999999888764 458899999643
No 488
>PRK04328 hypothetical protein; Provisional
Probab=96.97 E-value=0.0043 Score=59.18 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.8
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
++++||||+|||+++..++...
T Consensus 26 ili~G~pGsGKT~l~~~fl~~~ 47 (249)
T PRK04328 26 VLLSGGPGTGKSIFSQQFLWNG 47 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 8999999999999999887664
No 489
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.96 E-value=0.0051 Score=61.66 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.4
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~ 331 (533)
..++++||+|+||||+.+++...+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3589999999999999999998774
No 490
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.96 E-value=0.001 Score=56.22 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=22.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
.++|.|+.|+||||+++.+++.+..
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4889999999999999999998743
No 491
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.0014 Score=60.76 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.+.||+||||||+.+.+|-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999654
No 492
>KOG1808|consensus
Probab=96.95 E-value=0.003 Score=73.79 Aligned_cols=126 Identities=19% Similarity=0.296 Sum_probs=88.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccC---C--------CCCcEEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTM---H--------KSSYKLII 376 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~vli 376 (533)
.++|-||.|+|||++++.+|+.. +..+++++..... ..++.++.+...... + ..+++.+|
T Consensus 442 pillqG~tssGKtsii~~la~~~------g~~~vrinnheht---d~qeyig~y~~~~~g~l~freg~LV~Alr~G~~~v 512 (1856)
T KOG1808|consen 442 PILLQGPTSSGKTSIIKELARAT------GKNIVRINNHEHT---DLQEYIGTYVADDNGDLVFREGVLVQALRNGDWIV 512 (1856)
T ss_pred CeEEecCcCcCchhHHHHHHHHh------ccCceehhccccc---hHHHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEE
Confidence 38999999999999999999998 6666666654322 223333321110000 0 12467999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhc-----C---------CCcEEEEEeCCCC------CCChhhhccceeeeecCCCHHHHH
Q psy4285 377 LDEADAMTNDAQNALRRIIEKF-----T---------TNVRFCIICNYLS------KIPPAIQSRCTRFRFGPLDSSLIM 436 (533)
Q Consensus 377 iDE~d~l~~~~~~~Ll~~le~~-----~---------~~~~~I~~~n~~~------~l~~~l~sR~~~i~~~~~~~~~~~ 436 (533)
+||++....+..++|.++++.. + .+.++..|=|.+. .+..++++||..++|...+++++.
T Consensus 513 lD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~rf~e~~f~~~~e~e~~ 592 (1856)
T KOG1808|consen 513 LDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNRFIELHFDDIGEEELE 592 (1856)
T ss_pred eccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccccchhhhhhhcCchhhh
Confidence 9999999999999999999851 1 2222333334442 467788899999999999999999
Q ss_pred HHhhcC
Q psy4285 437 SRLDYD 442 (533)
Q Consensus 437 ~~l~~~ 442 (533)
.++.+.
T Consensus 593 ~i~~~~ 598 (1856)
T KOG1808|consen 593 EILEHR 598 (1856)
T ss_pred hhhccc
Confidence 999887
No 493
>KOG2543|consensus
Probab=96.95 E-value=0.0096 Score=58.29 Aligned_cols=135 Identities=20% Similarity=0.200 Sum_probs=70.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcce-------------EEe--cCCCCCch----hHHHHHHHHHHhcccCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMV-------------LEL--NASDDRGI----GIVRDQIFQFASTKTMH 368 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~-------------~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~ 368 (533)
++.++|..|||||.+++.+.+.+..+..+-.++ ..+ ...++... ..+...+..+.+.....
T Consensus 32 ~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t 111 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAAT 111 (438)
T ss_pred eEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhh
Confidence 479999999999999999999873332111000 001 01111111 12222233333311111
Q ss_pred -CCCcEEEEEeCCCCCCH---HHHHHHHHHHHhcC-CCcEEEEEeCCCCCCChhhhc--cceeeeecCCCHHHHHHHhhc
Q psy4285 369 -KSSYKLIILDEADAMTN---DAQNALRRIIEKFT-TNVRFCIICNYLSKIPPAIQS--RCTRFRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 369 -~~~~~vliiDE~d~l~~---~~~~~Ll~~le~~~-~~~~~I~~~n~~~~l~~~l~s--R~~~i~~~~~~~~~~~~~l~~ 441 (533)
....-+||+|.+|.+.. ...+.|++.-+--+ ..+.++++.-.....-..=.+ -...++|+.|+.++...++.+
T Consensus 112 ~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 112 NRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred ccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 12467899999998853 33344444333212 244555543222110000001 125799999999999999998
Q ss_pred C
Q psy4285 442 D 442 (533)
Q Consensus 442 ~ 442 (533)
-
T Consensus 192 ~ 192 (438)
T KOG2543|consen 192 D 192 (438)
T ss_pred C
Confidence 7
No 494
>KOG0479|consensus
Probab=96.94 E-value=0.0016 Score=66.65 Aligned_cols=112 Identities=15% Similarity=0.214 Sum_probs=71.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccc---cccCcceEEecCC----CCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTK---AQFNAMVLELNAS----DDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
|+|+.|.|.|.||-+.+.+.+..-.. .+.+..-+-+.+. ...+...+. ..... -+..+|++|||+
T Consensus 336 NiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD~eTGERRLE-------AGAMV-LADRGVVCIDEF 407 (818)
T KOG0479|consen 336 NILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGERRLE-------AGAMV-LADRGVVCIDEF 407 (818)
T ss_pred eEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeeccccchhhhh-------cCceE-EccCceEEehhc
Confidence 59999999999999999998764211 0001111111110 011121111 11111 145789999999
Q ss_pred CCCCHHHHHHHHHHHHhc-------------CCCcEEEEEeCCCC-------------CCChhhhccceeeee
Q psy4285 381 DAMTNDAQNALRRIIEKF-------------TTNVRFCIICNYLS-------------KIPPAIQSRCTRFRF 427 (533)
Q Consensus 381 d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~n~~~-------------~l~~~l~sR~~~i~~ 427 (533)
|+|+.-..-++.+.||+. ...|.++.+.|+.. .++..|+|||+.+++
T Consensus 408 DKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv 480 (818)
T KOG0479|consen 408 DKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFV 480 (818)
T ss_pred ccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEE
Confidence 999988888999999863 45688999988643 478899999974443
No 495
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.93 E-value=0.0017 Score=69.41 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=31.5
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 370 SSYKLIILDEAD-AMTNDAQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 370 ~~~~vliiDE~d-~l~~~~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
.+++++++||+- .++.+....+.+.+.+..++..+|++|.+
T Consensus 487 ~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 487 ADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 457899999985 57888888888888876556667777654
No 496
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.93 E-value=0.00088 Score=49.86 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.5
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
+.+.|+||+||||+++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999987
No 497
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.93 E-value=0.0086 Score=56.34 Aligned_cols=89 Identities=10% Similarity=0.074 Sum_probs=76.2
Q ss_pred ceEEEEEcCCCCcCchhhhccc-eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy4285 7 NVRFCIICNYLSKITPAIQSRC-TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQSAATA 85 (533)
Q Consensus 7 ~~~~il~~~~~~~i~~~i~SRc-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~~~~~~ 85 (533)
...+|-+|+....+..|||.|+ .+.++.-.+.+|+.+++.+.+...++++++++...|++.|.|-+|-|..+|......
T Consensus 151 pFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDf 230 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDF 230 (332)
T ss_pred CeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 3458889999999999999998 778888899999999999999999999999999999999999999999999887443
Q ss_pred ----CCCCcchhhH
Q psy4285 86 ----HADEVNEDTI 95 (533)
Q Consensus 86 ----~~~~i~~~~i 95 (533)
....|+.+..
T Consensus 231 a~V~~~~~I~~~ia 244 (332)
T COG2255 231 AQVKGDGDIDRDIA 244 (332)
T ss_pred HHHhcCCcccHHHH
Confidence 2334665543
No 498
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.92 E-value=0.0024 Score=63.91 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=23.9
Q ss_pred cCCCceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 304 NELPHLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 304 ~~~~~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
+....+++.||||+|||++++.+++.+..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 33345899999999999999999998643
No 499
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.91 E-value=0.011 Score=58.09 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=19.2
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
..++||||+|||+++..++-..
T Consensus 99 teI~G~~GsGKTql~lqla~~~ 120 (313)
T TIGR02238 99 TEVFGEFRCGKTQLSHTLCVTA 120 (313)
T ss_pred EEEECCCCCCcCHHHHHHHHHH
Confidence 6899999999999999887543
No 500
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.90 E-value=0.00069 Score=57.25 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=20.5
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
++|.|+||+||||+|+.+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999986
Done!