Query psy4285
Match_columns 533
No_of_seqs 620 out of 5557
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 21:39:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4285.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4285hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_C Activator 1 40 kDa subu 99.9 8.3E-25 2.8E-29 218.5 25.1 238 288-526 28-334 (340)
2 2gno_A DNA polymerase III, gam 99.9 4.9E-24 1.7E-28 207.8 21.0 231 289-525 1-300 (305)
3 1iqp_A RFCS; clamp loader, ext 99.9 2.7E-23 9.1E-28 206.5 23.0 235 288-523 28-325 (327)
4 2chq_A Replication factor C sm 99.9 3.1E-23 1.1E-27 205.2 21.2 236 288-524 20-318 (319)
5 1sxj_E Activator 1 40 kDa subu 99.9 6.7E-22 2.3E-26 198.7 27.1 236 288-524 17-354 (354)
6 1sxj_D Activator 1 41 kDa subu 99.9 7.9E-22 2.7E-26 198.1 22.7 233 288-521 40-352 (353)
7 3u61_B DNA polymerase accessor 99.9 1.7E-21 5.8E-26 193.3 23.5 226 288-523 29-321 (324)
8 1sxj_B Activator 1 37 kDa subu 99.9 1.3E-21 4.5E-26 193.9 22.5 236 288-524 24-321 (323)
9 1a5t_A Delta prime, HOLB; zinc 99.9 6.3E-21 2.1E-25 189.5 23.4 233 288-522 5-322 (334)
10 3cf2_A TER ATPase, transitiona 99.9 3.1E-21 1.1E-25 208.2 15.4 150 308-478 513-695 (806)
11 4b4t_J 26S protease regulatory 99.8 1.4E-18 4.9E-23 172.5 17.6 189 263-477 142-365 (405)
12 1jr3_A DNA polymerase III subu 99.8 3.6E-17 1.2E-21 165.3 24.3 153 288-442 19-190 (373)
13 2chg_A Replication factor C sm 99.8 1.9E-17 6.6E-22 154.3 19.8 153 289-442 21-173 (226)
14 4b4t_I 26S protease regulatory 99.8 8.2E-18 2.8E-22 167.3 17.1 189 263-477 176-399 (437)
15 3pxi_A Negative regulator of g 99.7 1.1E-17 3.8E-22 184.3 17.2 127 308-442 523-674 (758)
16 4b4t_L 26S protease subunit RP 99.7 2E-17 6.8E-22 167.1 17.1 189 263-477 175-398 (437)
17 4b4t_M 26S protease regulatory 99.7 9.7E-18 3.3E-22 169.2 14.6 189 263-477 175-398 (434)
18 1r6b_X CLPA protein; AAA+, N-t 99.7 3.6E-17 1.2E-21 180.4 19.9 144 287-442 460-665 (758)
19 4b4t_H 26S protease regulatory 99.7 3E-17 1E-21 165.0 16.4 189 263-477 203-426 (467)
20 4b4t_K 26S protease regulatory 99.7 3.8E-17 1.3E-21 164.8 16.1 189 263-477 166-390 (428)
21 3pvs_A Replication-associated 99.7 5.1E-17 1.7E-21 166.6 17.0 144 288-442 29-177 (447)
22 1xwi_A SKD1 protein; VPS4B, AA 99.7 5.2E-16 1.8E-20 153.0 18.3 151 308-478 47-227 (322)
23 2qp9_X Vacuolar protein sortin 99.7 3.4E-16 1.2E-20 156.5 17.1 150 308-478 86-265 (355)
24 1qvr_A CLPB protein; coiled co 99.7 2.5E-16 8.7E-21 175.3 17.9 151 287-442 560-769 (854)
25 3eie_A Vacuolar protein sortin 99.7 1.9E-16 6.4E-21 156.5 13.7 150 307-477 52-231 (322)
26 1njg_A DNA polymerase III subu 99.7 1.1E-15 3.8E-20 144.3 17.5 152 289-442 27-197 (250)
27 2zan_A Vacuolar protein sortin 99.6 1.6E-15 5.4E-20 156.1 16.2 152 307-478 168-349 (444)
28 3h4m_A Proteasome-activating n 99.6 1.1E-15 3.6E-20 148.5 13.0 150 307-477 52-234 (285)
29 3cf0_A Transitional endoplasmi 99.6 1.5E-15 5E-20 148.5 13.0 150 308-478 51-233 (301)
30 3vfd_A Spastin; ATPase, microt 99.6 5.3E-15 1.8E-19 150.0 17.4 148 307-475 149-327 (389)
31 3syl_A Protein CBBX; photosynt 99.6 3E-15 1E-19 147.0 15.1 127 307-442 68-216 (309)
32 3pfi_A Holliday junction ATP-d 99.6 6.1E-15 2.1E-19 146.8 17.3 123 306-442 55-196 (338)
33 3b9p_A CG5977-PA, isoform A; A 99.6 9.1E-15 3.1E-19 142.8 17.1 148 307-475 55-234 (297)
34 2qz4_A Paraplegin; AAA+, SPG7, 99.6 9.6E-15 3.3E-19 139.8 16.6 153 307-478 40-226 (262)
35 1ypw_A Transitional endoplasmi 99.6 1.2E-16 4.1E-21 175.7 3.4 124 307-442 512-660 (806)
36 3d8b_A Fidgetin-like protein 1 99.6 5.8E-15 2E-19 147.8 15.3 150 307-477 118-298 (357)
37 3cf2_A TER ATPase, transitiona 99.6 9.8E-15 3.4E-19 157.8 16.9 186 266-477 201-418 (806)
38 3uk6_A RUVB-like 2; hexameric 99.6 7.1E-15 2.4E-19 148.1 14.1 70 372-442 190-271 (368)
39 1sxj_E Activator 1 40 kDa subu 99.6 5.8E-15 2E-19 148.0 12.4 165 1-165 158-352 (354)
40 4fcw_A Chaperone protein CLPB; 99.6 3.2E-15 1.1E-19 147.0 10.1 127 308-442 49-228 (311)
41 1ofh_A ATP-dependent HSL prote 99.6 4E-15 1.4E-19 146.2 10.2 160 276-442 6-214 (310)
42 1hqc_A RUVB; extended AAA-ATPa 99.6 3.6E-14 1.2E-18 140.3 17.0 123 307-442 39-180 (324)
43 3te6_A Regulatory protein SIR3 99.6 1.2E-14 4.2E-19 141.0 13.2 155 286-442 25-210 (318)
44 3hu3_A Transitional endoplasmi 99.5 1.1E-14 3.7E-19 150.8 11.1 150 307-477 239-418 (489)
45 1sxj_C Activator 1 40 kDa subu 99.5 1.6E-14 5.6E-19 143.7 11.4 167 1-167 134-332 (340)
46 1lv7_A FTSH; alpha/beta domain 99.5 7.3E-14 2.5E-18 133.3 15.1 124 307-442 46-194 (257)
47 1sxj_A Activator 1 95 kDa subu 99.5 4.6E-14 1.6E-18 148.2 13.9 128 307-442 78-221 (516)
48 2c9o_A RUVB-like 1; hexameric 99.5 9.2E-14 3.1E-18 143.7 15.7 69 373-442 297-378 (456)
49 3t15_A Ribulose bisphosphate c 99.5 3.1E-14 1.1E-18 138.3 11.3 126 308-442 38-197 (293)
50 1um8_A ATP-dependent CLP prote 99.5 4.1E-14 1.4E-18 142.9 11.9 163 271-441 7-284 (376)
51 1jbk_A CLPB protein; beta barr 99.5 2.4E-14 8E-19 129.9 9.1 141 292-439 29-194 (195)
52 3m6a_A ATP-dependent protease 99.5 6.5E-14 2.2E-18 147.5 13.3 128 306-442 108-265 (543)
53 2ce7_A Cell division protein F 99.5 1.3E-13 4.5E-18 141.4 14.6 149 308-477 51-232 (476)
54 3hws_A ATP-dependent CLP prote 99.5 8.9E-14 3.1E-18 139.7 12.2 163 273-441 3-267 (363)
55 1ojl_A Transcriptional regulat 99.5 6.9E-14 2.4E-18 136.5 11.0 167 307-488 26-222 (304)
56 2bjv_A PSP operon transcriptio 99.5 2.5E-13 8.5E-18 130.2 13.8 169 307-488 30-227 (265)
57 3n70_A Transport activator; si 99.5 6.4E-14 2.2E-18 121.2 8.3 111 307-430 25-144 (145)
58 2r62_A Cell division protease 99.5 4.7E-15 1.6E-19 142.6 1.2 123 308-442 46-195 (268)
59 2r44_A Uncharacterized protein 99.5 4.8E-14 1.6E-18 139.9 7.6 144 288-442 30-197 (331)
60 3bos_A Putative DNA replicatio 99.5 2.5E-13 8.4E-18 128.0 11.5 138 292-442 38-186 (242)
61 1d2n_A N-ethylmaleimide-sensit 99.5 1.6E-13 5.3E-18 132.2 10.3 121 307-439 65-208 (272)
62 3u61_B DNA polymerase accessor 99.5 6.4E-14 2.2E-18 138.5 7.6 162 1-164 130-319 (324)
63 2v1u_A Cell division control p 99.4 3.3E-12 1.1E-16 129.2 19.8 139 303-442 41-213 (387)
64 1in4_A RUVB, holliday junction 99.4 5.5E-12 1.9E-16 124.9 20.0 122 307-442 52-192 (334)
65 2chq_A Replication factor C sm 99.4 2E-12 6.7E-17 127.3 16.0 163 1-164 126-315 (319)
66 2p65_A Hypothetical protein PF 99.4 1.7E-13 5.8E-18 123.6 6.2 135 290-431 27-187 (187)
67 3co5_A Putative two-component 99.4 1.2E-13 4.1E-18 119.1 4.9 107 307-430 28-142 (143)
68 2x8a_A Nuclear valosin-contain 99.4 2.4E-12 8.4E-17 123.5 14.1 156 308-478 46-230 (274)
69 1sxj_D Activator 1 41 kDa subu 99.4 1.2E-12 4.2E-17 130.8 12.3 163 1-163 157-351 (353)
70 3pxg_A Negative regulator of g 99.4 2.8E-12 9.7E-17 132.7 14.9 143 288-442 183-337 (468)
71 1g8p_A Magnesium-chelatase 38 99.4 4.3E-12 1.5E-16 126.7 15.7 71 371-441 144-230 (350)
72 2z4s_A Chromosomal replication 99.4 7.3E-13 2.5E-17 136.0 9.0 131 306-442 130-275 (440)
73 1fnn_A CDC6P, cell division co 99.4 2E-12 7E-17 131.0 12.0 133 308-442 46-205 (389)
74 1l8q_A Chromosomal replication 99.4 1.1E-12 3.8E-17 129.6 9.8 127 306-442 37-178 (324)
75 2dhr_A FTSH; AAA+ protein, hex 99.3 3.7E-12 1.3E-16 131.4 12.3 154 308-478 66-248 (499)
76 1iqp_A RFCS; clamp loader, ext 99.3 4.8E-12 1.6E-16 125.0 12.1 163 1-164 134-323 (327)
77 1g41_A Heat shock protein HSLU 99.3 1.2E-11 4E-16 125.1 14.3 71 371-441 250-347 (444)
78 1jr3_D DNA polymerase III, del 99.3 3.8E-12 1.3E-16 126.8 9.9 103 1-103 101-210 (343)
79 1ixz_A ATP-dependent metallopr 99.3 7.3E-12 2.5E-16 119.1 10.8 153 308-477 51-232 (254)
80 1qvr_A CLPB protein; coiled co 99.3 1.8E-11 6.1E-16 136.3 15.3 147 289-442 174-344 (854)
81 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 1.6E-12 5.5E-17 134.3 6.2 149 287-442 24-195 (500)
82 1sxj_B Activator 1 37 kDa subu 99.3 8.4E-12 2.9E-16 123.0 10.4 163 1-164 131-318 (323)
83 2qby_B CDC6 homolog 3, cell di 99.3 2.3E-12 7.9E-17 130.4 6.2 137 302-442 41-209 (384)
84 1jr3_D DNA polymerase III, del 99.3 1.4E-11 4.6E-16 122.8 10.7 136 299-442 11-154 (343)
85 3pxi_A Negative regulator of g 99.2 1.2E-11 4E-16 136.2 9.7 143 288-442 183-337 (758)
86 2qby_A CDC6 homolog 1, cell di 99.2 1.7E-11 5.8E-16 123.9 10.3 135 303-441 42-208 (386)
87 1iy2_A ATP-dependent metallopr 99.2 3.7E-11 1.3E-15 115.8 11.4 127 308-442 75-222 (278)
88 1a5t_A Delta prime, HOLB; zinc 99.2 8.9E-12 3E-16 123.4 7.1 78 1-83 132-209 (334)
89 2gno_A DNA polymerase III, gam 99.2 9.9E-12 3.4E-16 120.8 6.7 150 1-163 106-295 (305)
90 3f9v_A Minichromosome maintena 99.2 2.8E-12 9.5E-17 136.2 1.7 126 308-436 329-483 (595)
91 1r6b_X CLPA protein; AAA+, N-t 99.2 4.2E-11 1.5E-15 131.9 10.8 147 288-442 189-361 (758)
92 1ypw_A Transitional endoplasmi 99.2 1E-10 3.5E-15 128.6 13.3 124 307-442 239-384 (806)
93 3e1s_A Exodeoxyribonuclease V, 99.2 6.1E-12 2.1E-16 132.9 2.3 208 177-412 47-317 (574)
94 1ny5_A Transcriptional regulat 99.2 3.8E-10 1.3E-14 113.8 15.1 176 308-496 162-364 (387)
95 2c9o_A RUVB-like 1; hexameric 99.2 1.1E-10 3.8E-15 120.5 11.3 99 1-100 319-435 (456)
96 3dzd_A Transcriptional regulat 99.1 9.3E-10 3.2E-14 110.0 17.1 165 308-488 154-348 (368)
97 1jr3_A DNA polymerase III subu 99.1 2E-10 6.8E-15 115.6 11.4 101 1-101 143-243 (373)
98 2kjq_A DNAA-related protein; s 99.1 1.4E-10 4.8E-15 100.3 8.1 98 308-423 38-140 (149)
99 1tue_A Replication protein E1; 99.0 3.5E-10 1.2E-14 101.0 8.0 116 294-429 45-178 (212)
100 1u0j_A DNA replication protein 99.0 6.3E-10 2.1E-14 104.3 9.2 126 293-440 89-248 (267)
101 3k1j_A LON protease, ATP-depen 99.0 2.6E-10 8.8E-15 121.9 7.3 53 371-423 201-276 (604)
102 3ec2_A DNA replication protein 99.0 6.8E-10 2.3E-14 99.5 7.5 99 308-413 40-145 (180)
103 3pvs_A Replication-associated 98.9 1.7E-09 6E-14 110.7 9.7 112 6-117 133-261 (447)
104 1njg_A DNA polymerase III subu 98.9 3.7E-09 1.3E-13 99.1 10.8 98 2-99 151-248 (250)
105 4akg_A Glutathione S-transfera 98.9 2.6E-09 8.8E-14 128.8 11.9 130 308-442 1269-1430(2695)
106 2chg_A Replication factor C sm 98.9 3.4E-09 1.2E-13 97.9 10.3 98 2-100 127-224 (226)
107 1w5s_A Origin recognition comp 98.8 6E-09 2.1E-13 106.2 8.0 132 306-441 50-226 (412)
108 2w58_A DNAI, primosome compone 98.7 9.4E-09 3.2E-13 93.8 4.8 94 307-411 55-159 (202)
109 3uk6_A RUVB-like 2; hexameric 98.7 6.8E-08 2.3E-12 96.8 11.5 99 1-100 213-328 (368)
110 4akg_A Glutathione S-transfera 98.7 2.2E-07 7.6E-12 112.3 17.5 121 308-441 647-791 (2695)
111 3f8t_A Predicted ATPase involv 98.6 3.8E-07 1.3E-11 91.6 14.9 112 307-425 240-374 (506)
112 1sxj_A Activator 1 95 kDa subu 98.6 1.1E-07 3.7E-12 99.7 11.3 96 7-103 179-275 (516)
113 2qgz_A Helicase loader, putati 98.6 1.4E-08 4.8E-13 98.9 3.2 97 307-411 153-258 (308)
114 3vkg_A Dynein heavy chain, cyt 98.5 2.4E-07 8.3E-12 112.5 12.1 128 308-440 1306-1466(3245)
115 2r2a_A Uncharacterized protein 98.5 6.3E-08 2.2E-12 87.6 4.6 118 309-429 8-152 (199)
116 2qen_A Walker-type ATPase; unk 98.5 4.2E-07 1.4E-11 90.1 10.2 69 372-441 129-214 (350)
117 2fna_A Conserved hypothetical 98.5 5.9E-07 2E-11 89.2 11.0 69 372-441 138-220 (357)
118 3upu_A ATP-dependent DNA helic 98.4 6.1E-07 2.1E-11 92.5 10.0 117 289-412 29-166 (459)
119 1ye8_A Protein THEP1, hypothet 98.3 1.7E-06 5.9E-11 76.8 9.7 68 370-439 98-172 (178)
120 3vkg_A Dynein heavy chain, cyt 98.3 3.6E-06 1.2E-10 102.5 15.0 121 309-442 607-752 (3245)
121 3bos_A Putative DNA replicatio 98.3 2.9E-06 1E-10 79.1 10.7 91 9-99 140-240 (242)
122 1in4_A RUVB, holliday junction 98.3 4.1E-06 1.4E-10 82.5 11.7 95 7-101 150-249 (334)
123 1w36_D RECD, exodeoxyribonucle 98.2 1.3E-06 4.4E-11 93.1 7.8 101 308-411 166-299 (608)
124 2orw_A Thymidine kinase; TMTK, 98.2 4.5E-07 1.5E-11 81.1 3.2 106 309-423 6-131 (184)
125 3pfi_A Holliday junction ATP-d 98.2 4.5E-06 1.5E-10 82.4 10.1 93 7-99 154-251 (338)
126 1hqc_A RUVB; extended AAA-ATPa 98.2 6.8E-06 2.3E-10 80.5 11.4 93 6-98 137-234 (324)
127 1g5t_A COB(I)alamin adenosyltr 98.1 1.8E-05 6.1E-10 70.4 11.2 107 307-422 29-171 (196)
128 2vhj_A Ntpase P4, P4; non- hyd 98.1 9.7E-06 3.3E-10 77.8 10.0 21 309-329 126-146 (331)
129 2z4s_A Chromosomal replication 98.1 7.6E-06 2.6E-10 83.7 9.8 97 6-102 226-332 (440)
130 2qby_B CDC6 homolog 3, cell di 98.1 1.6E-05 5.6E-10 79.7 11.8 94 6-99 163-267 (384)
131 3te6_A Regulatory protein SIR3 98.1 8.1E-06 2.8E-10 79.0 8.7 82 4-85 160-285 (318)
132 3syl_A Protein CBBX; photosynt 98.0 2.1E-06 7E-11 83.7 3.5 84 1-84 163-260 (309)
133 2v1u_A Cell division control p 98.0 1.8E-05 6.2E-10 79.3 10.3 95 5-99 165-273 (387)
134 2r8r_A Sensor protein; KDPD, P 98.0 1.4E-05 4.8E-10 72.7 7.8 128 308-442 8-176 (228)
135 1fnn_A CDC6P, cell division co 97.9 4.7E-05 1.6E-09 76.4 11.2 94 6-99 158-271 (389)
136 2b8t_A Thymidine kinase; deoxy 97.9 4.2E-05 1.4E-09 70.1 9.6 93 309-409 15-124 (223)
137 1ofh_A ATP-dependent HSL prote 97.8 4.3E-05 1.5E-09 74.1 9.3 80 4-83 165-270 (310)
138 3cmu_A Protein RECA, recombina 97.7 9.8E-05 3.4E-09 86.8 10.7 26 308-333 1429-1454(2050)
139 2qby_A CDC6 homolog 1, cell di 97.7 0.0002 6.7E-09 71.6 11.2 95 4-98 160-268 (386)
140 1l8q_A Chromosomal replication 97.7 0.00017 6E-09 70.4 10.4 77 7-85 131-214 (324)
141 1z6t_A APAF-1, apoptotic prote 97.5 0.00088 3E-08 71.2 14.1 62 371-442 236-298 (591)
142 3vfd_A Spastin; ATPase, microt 97.5 0.00033 1.1E-08 70.4 9.5 79 4-82 249-328 (389)
143 3m6a_A ATP-dependent protease 97.5 0.00024 8.1E-09 74.6 8.6 79 6-84 223-313 (543)
144 2qp9_X Vacuolar protein sortin 97.4 0.00052 1.8E-08 67.9 10.6 82 3-84 183-266 (355)
145 2fz4_A DNA repair protein RAD2 97.4 0.00012 4.2E-09 68.0 5.3 23 308-330 110-132 (237)
146 3dl0_A Adenylate kinase; phosp 97.4 0.002 6.7E-08 58.7 13.3 22 309-330 3-24 (216)
147 2a5y_B CED-4; apoptosis; HET: 97.4 0.00031 1.1E-08 74.0 8.9 126 308-442 154-305 (549)
148 2iut_A DNA translocase FTSK; n 97.4 0.0032 1.1E-07 65.3 15.6 69 372-440 344-420 (574)
149 1g8p_A Magnesium-chelatase 38 97.3 0.00076 2.6E-08 66.5 10.1 94 5-98 185-318 (350)
150 1vt4_I APAF-1 related killer D 97.3 0.00051 1.8E-08 75.7 9.0 22 308-329 152-173 (1221)
151 2j9r_A Thymidine kinase; TK1, 97.3 0.00057 1.9E-08 61.6 7.8 95 309-409 31-136 (214)
152 2cvh_A DNA repair and recombin 97.3 0.0015 5E-08 59.6 10.9 20 309-328 23-42 (220)
153 1svm_A Large T antigen; AAA+ f 97.2 0.0002 6.9E-09 71.1 4.8 91 308-420 171-272 (377)
154 3pxg_A Negative regulator of g 97.2 0.00042 1.4E-08 71.3 7.1 80 5-84 289-383 (468)
155 3fb4_A Adenylate kinase; psych 97.2 0.0019 6.5E-08 58.8 10.6 22 309-330 3-24 (216)
156 3cmw_A Protein RECA, recombina 97.2 0.00066 2.3E-08 79.0 8.8 25 309-333 1085-1109(1706)
157 2zan_A Vacuolar protein sortin 97.2 0.0012 4E-08 67.5 9.9 81 4-84 268-350 (444)
158 3b9p_A CG5977-PA, isoform A; A 97.2 0.00092 3.1E-08 64.3 8.6 74 6-79 158-232 (297)
159 3d8b_A Fidgetin-like protein 1 97.2 0.0016 5.6E-08 64.4 10.5 80 4-83 218-299 (357)
160 3eie_A Vacuolar protein sortin 97.2 0.0015 5.2E-08 63.6 10.1 81 3-83 150-232 (322)
161 3cmu_A Protein RECA, recombina 97.2 0.00089 3.1E-08 78.9 9.6 96 308-411 1083-1217(2050)
162 3sfz_A APAF-1, apoptotic pepti 97.1 0.0046 1.6E-07 71.7 15.4 60 372-441 237-297 (1249)
163 3hr8_A Protein RECA; alpha and 97.1 0.0023 7.9E-08 62.8 10.9 24 309-332 64-87 (356)
164 3tlx_A Adenylate kinase 2; str 97.1 0.0022 7.5E-08 59.7 10.3 23 308-330 31-53 (243)
165 2zr9_A Protein RECA, recombina 97.1 0.0025 8.5E-08 62.7 11.1 25 308-332 63-87 (349)
166 2i3b_A HCR-ntpase, human cance 97.1 0.002 6.9E-08 57.4 9.5 24 308-331 3-26 (189)
167 1w4r_A Thymidine kinase; type 97.1 0.0018 6E-08 57.4 8.6 92 309-408 23-124 (195)
168 1xx6_A Thymidine kinase; NESG, 97.1 0.00071 2.4E-08 60.4 6.2 88 309-409 11-116 (191)
169 3vkw_A Replicase large subunit 97.1 0.0011 3.8E-08 66.6 8.2 90 309-411 164-270 (446)
170 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.002 6.7E-08 62.8 9.9 80 4-83 146-227 (322)
171 3trf_A Shikimate kinase, SK; a 97.1 0.00034 1.2E-08 62.1 4.1 24 307-330 6-29 (185)
172 1u94_A RECA protein, recombina 97.0 0.0036 1.2E-07 61.6 11.4 25 308-332 65-89 (356)
173 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.0029 1E-07 58.0 10.3 24 308-331 25-48 (235)
174 1qhx_A CPT, protein (chloramph 97.0 0.00042 1.4E-08 61.0 4.2 23 308-330 5-27 (178)
175 3umf_A Adenylate kinase; rossm 97.0 0.0013 4.5E-08 59.9 7.4 23 308-330 31-53 (217)
176 2orv_A Thymidine kinase; TP4A 97.0 0.0036 1.2E-07 56.9 10.3 95 309-410 22-125 (234)
177 2r44_A Uncharacterized protein 97.0 0.0051 1.8E-07 60.0 12.1 95 5-99 148-294 (331)
178 2ius_A DNA translocase FTSK; n 97.0 0.0087 3E-07 61.5 13.9 69 373-441 299-375 (512)
179 3llm_A ATP-dependent RNA helic 97.0 0.0019 6.5E-08 59.7 8.2 21 308-328 78-98 (235)
180 3jvv_A Twitching mobility prot 97.0 0.0045 1.5E-07 60.9 11.2 92 308-412 125-232 (356)
181 4fcw_A Chaperone protein CLPB; 97.0 0.00057 2E-08 66.2 4.8 79 6-84 159-276 (311)
182 1zuh_A Shikimate kinase; alpha 97.0 0.00051 1.7E-08 59.9 4.0 24 307-330 8-31 (168)
183 1t6n_A Probable ATP-dependent 97.0 0.0042 1.4E-07 56.6 10.4 52 370-421 157-210 (220)
184 1xp8_A RECA protein, recombina 96.9 0.0046 1.6E-07 61.1 11.2 25 308-332 76-100 (366)
185 3kb2_A SPBC2 prophage-derived 96.9 0.00063 2.2E-08 59.4 4.4 23 308-330 3-25 (173)
186 1n0w_A DNA repair protein RAD5 96.9 0.0029 9.8E-08 58.6 9.2 23 308-330 26-48 (243)
187 2gk6_A Regulator of nonsense t 96.9 0.0019 6.4E-08 69.0 8.8 25 308-332 197-221 (624)
188 1d2n_A N-ethylmaleimide-sensit 96.9 0.00065 2.2E-08 64.5 4.5 76 4-84 164-247 (272)
189 3iij_A Coilin-interacting nucl 96.9 0.00068 2.3E-08 59.9 4.3 24 307-330 12-35 (180)
190 2dr3_A UPF0273 protein PH0284; 96.9 0.0081 2.8E-07 55.6 11.8 24 308-331 25-48 (247)
191 2iyv_A Shikimate kinase, SK; t 96.8 0.00075 2.6E-08 59.8 4.2 23 308-330 4-26 (184)
192 3vaa_A Shikimate kinase, SK; s 96.8 0.00076 2.6E-08 60.7 4.2 23 308-330 27-49 (199)
193 1via_A Shikimate kinase; struc 96.8 0.00092 3.1E-08 58.7 4.6 23 308-330 6-28 (175)
194 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.0015 5.3E-08 61.4 6.4 23 308-330 6-28 (260)
195 1y63_A LMAJ004144AAA protein; 96.8 0.00076 2.6E-08 59.9 4.0 23 307-329 11-33 (184)
196 1v5w_A DMC1, meiotic recombina 96.8 0.0046 1.6E-07 60.7 10.0 22 309-330 125-146 (343)
197 2wjy_A Regulator of nonsense t 96.8 0.0026 8.9E-08 69.6 8.9 26 307-332 372-397 (800)
198 1kag_A SKI, shikimate kinase I 96.7 0.0011 3.7E-08 58.0 4.2 23 308-330 6-28 (173)
199 2eyu_A Twitching motility prot 96.7 0.01 3.5E-07 55.7 11.2 24 308-331 27-50 (261)
200 4a74_A DNA repair and recombin 96.7 0.0053 1.8E-07 56.2 9.1 24 308-331 27-50 (231)
201 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00096 3.3E-08 65.0 3.9 38 294-331 12-49 (359)
202 2xzl_A ATP-dependent helicase 96.7 0.0037 1.3E-07 68.4 9.0 42 371-418 517-558 (802)
203 1nrj_B SR-beta, signal recogni 96.7 0.0057 2E-07 55.5 9.0 105 305-413 11-132 (218)
204 3h4m_A Proteasome-activating n 96.6 0.01 3.4E-07 56.5 10.9 95 4-99 153-255 (285)
205 1e6c_A Shikimate kinase; phosp 96.6 0.0012 4.1E-08 57.7 3.9 23 308-330 4-26 (173)
206 1gvn_B Zeta; postsegregational 96.6 0.0014 4.9E-08 62.6 4.7 23 308-330 35-57 (287)
207 3lda_A DNA repair protein RAD5 96.6 0.0076 2.6E-07 60.2 10.1 23 308-330 180-202 (400)
208 3kl4_A SRP54, signal recogniti 96.6 0.0084 2.9E-07 60.4 10.4 24 309-332 100-123 (433)
209 3b6e_A Interferon-induced heli 96.6 0.0015 5.2E-08 59.2 4.6 23 308-330 50-72 (216)
210 2ze6_A Isopentenyl transferase 96.6 0.0015 5.2E-08 61.2 4.7 23 308-330 3-25 (253)
211 3h1t_A Type I site-specific re 96.6 0.0023 8E-08 67.9 6.7 26 307-332 199-224 (590)
212 1aky_A Adenylate kinase; ATP:A 96.6 0.0017 5.7E-08 59.4 4.7 23 308-330 6-28 (220)
213 4b4t_J 26S protease regulatory 96.6 0.0025 8.6E-08 63.3 6.2 68 139-216 183-255 (405)
214 3lw7_A Adenylate kinase relate 96.6 0.0012 4E-08 57.7 3.5 22 308-330 3-24 (179)
215 3zvl_A Bifunctional polynucleo 96.6 0.0031 1E-07 63.8 7.0 82 309-406 261-342 (416)
216 3dm5_A SRP54, signal recogniti 96.6 0.016 5.4E-07 58.4 12.1 26 308-333 102-127 (443)
217 2cdn_A Adenylate kinase; phosp 96.6 0.0014 4.8E-08 59.0 4.0 23 308-330 22-44 (201)
218 2rhm_A Putative kinase; P-loop 96.5 0.0014 4.9E-08 58.3 3.9 23 308-330 7-29 (193)
219 3t61_A Gluconokinase; PSI-biol 96.5 0.0017 5.7E-08 58.5 4.4 23 308-330 20-42 (202)
220 2i1q_A DNA repair and recombin 96.5 0.0051 1.7E-07 59.8 8.1 22 309-330 101-122 (322)
221 1kht_A Adenylate kinase; phosp 96.5 0.0013 4.5E-08 58.4 3.5 24 308-331 5-28 (192)
222 3cm0_A Adenylate kinase; ATP-b 96.5 0.0016 5.5E-08 57.7 4.1 23 308-330 6-28 (186)
223 2pt5_A Shikimate kinase, SK; a 96.5 0.0016 5.3E-08 56.7 3.9 23 308-330 2-24 (168)
224 1pzn_A RAD51, DNA repair and r 96.5 0.0058 2E-07 60.1 8.4 22 309-330 134-155 (349)
225 2c95_A Adenylate kinase 1; tra 96.5 0.0015 5.1E-08 58.4 3.8 23 308-330 11-33 (196)
226 1rif_A DAR protein, DNA helica 96.5 0.0079 2.7E-07 57.2 9.1 24 308-331 130-153 (282)
227 1vec_A ATP-dependent RNA helic 96.5 0.008 2.7E-07 54.0 8.7 42 370-411 145-187 (206)
228 1qde_A EIF4A, translation init 96.5 0.0075 2.6E-07 55.0 8.6 42 370-411 154-196 (224)
229 1tev_A UMP-CMP kinase; ploop, 96.5 0.0017 5.7E-08 57.9 4.0 23 308-330 5-27 (196)
230 1ly1_A Polynucleotide kinase; 96.5 0.0013 4.6E-08 57.7 3.3 21 308-328 4-24 (181)
231 1nks_A Adenylate kinase; therm 96.5 0.0013 4.4E-08 58.6 3.0 24 308-331 3-26 (194)
232 4eun_A Thermoresistant glucoki 96.5 0.0023 7.9E-08 57.5 4.7 23 308-330 31-53 (200)
233 2bjv_A PSP operon transcriptio 96.5 0.006 2E-07 57.4 7.8 91 5-95 139-250 (265)
234 1um8_A ATP-dependent CLP prote 96.5 0.0033 1.1E-07 62.6 6.3 66 19-84 255-337 (376)
235 1ak2_A Adenylate kinase isoenz 96.4 0.0025 8.7E-08 58.8 4.8 23 308-330 18-40 (233)
236 3sr0_A Adenylate kinase; phosp 96.4 0.0023 7.9E-08 57.8 4.4 22 309-330 3-24 (206)
237 3be4_A Adenylate kinase; malar 96.4 0.002 6.9E-08 58.8 3.9 23 308-330 7-29 (217)
238 2bwj_A Adenylate kinase 5; pho 96.4 0.0018 6.2E-08 57.9 3.5 23 308-330 14-36 (199)
239 2p5t_B PEZT; postsegregational 96.4 0.002 6.9E-08 60.3 3.9 23 308-330 34-56 (253)
240 3pey_A ATP-dependent RNA helic 96.4 0.011 3.8E-07 58.8 9.5 41 370-410 144-186 (395)
241 2vli_A Antibiotic resistance p 96.3 0.0015 5.2E-08 57.6 2.6 23 308-330 7-29 (183)
242 1ukz_A Uridylate kinase; trans 96.3 0.0022 7.4E-08 57.8 3.7 23 308-330 17-39 (203)
243 1knq_A Gluconate kinase; ALFA/ 96.3 0.0028 9.6E-08 55.5 4.3 23 308-330 10-32 (175)
244 4b4t_L 26S protease subunit RP 96.3 0.0031 1.1E-07 63.6 5.1 68 139-216 216-288 (437)
245 1qf9_A UMP/CMP kinase, protein 96.3 0.0024 8.1E-08 56.8 3.9 23 308-330 8-30 (194)
246 4gp7_A Metallophosphoesterase; 96.3 0.0073 2.5E-07 52.7 6.9 18 308-325 11-28 (171)
247 3cmw_A Protein RECA, recombina 96.3 0.01 3.4E-07 69.4 9.7 70 308-385 36-126 (1706)
248 4b4t_M 26S protease regulatory 96.3 0.0029 9.8E-08 63.7 4.7 67 139-215 216-287 (434)
249 1lv7_A FTSH; alpha/beta domain 96.3 0.029 9.9E-07 52.4 11.4 93 4-98 147-248 (257)
250 1zak_A Adenylate kinase; ATP:A 96.3 0.0022 7.5E-08 58.7 3.5 24 307-330 6-29 (222)
251 2plr_A DTMP kinase, probable t 96.3 0.0023 7.7E-08 57.9 3.6 24 308-331 6-29 (213)
252 3gfo_A Cobalt import ATP-bindi 96.3 0.0099 3.4E-07 56.2 8.1 43 370-412 160-205 (275)
253 3nh6_A ATP-binding cassette SU 96.3 0.0012 4.2E-08 63.4 1.8 42 371-412 208-250 (306)
254 2xau_A PRE-mRNA-splicing facto 96.3 0.01 3.5E-07 64.8 9.2 22 308-329 111-132 (773)
255 1zd8_A GTP:AMP phosphotransfer 96.3 0.002 6.8E-08 59.3 3.1 23 308-330 9-31 (227)
256 2zpa_A Uncharacterized protein 96.2 0.01 3.5E-07 62.7 8.7 78 308-392 194-276 (671)
257 1e4v_A Adenylate kinase; trans 96.2 0.0026 9E-08 57.8 3.6 23 308-330 2-24 (214)
258 2yvu_A Probable adenylyl-sulfa 96.2 0.0029 1E-07 56.0 3.8 24 308-331 15-38 (186)
259 3e2i_A Thymidine kinase; Zn-bi 96.2 0.018 6.1E-07 51.7 8.8 36 370-408 100-135 (219)
260 3uie_A Adenylyl-sulfate kinase 96.2 0.0026 9.1E-08 57.1 3.5 24 308-331 27-50 (200)
261 3bor_A Human initiation factor 96.2 0.0068 2.3E-07 56.0 6.4 42 370-411 172-214 (237)
262 4b4t_I 26S protease regulatory 96.2 0.0048 1.6E-07 61.6 5.5 68 139-216 217-289 (437)
263 4b3f_X DNA-binding protein smu 96.2 0.0032 1.1E-07 67.6 4.6 26 308-333 207-232 (646)
264 2xb4_A Adenylate kinase; ATP-b 96.2 0.0037 1.3E-07 57.2 4.4 22 309-330 3-24 (223)
265 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.025 8.6E-07 52.8 10.3 81 4-84 142-227 (262)
266 2jaq_A Deoxyguanosine kinase; 96.1 0.003 1E-07 56.7 3.5 23 308-330 2-24 (205)
267 2z0h_A DTMP kinase, thymidylat 96.1 0.0031 1E-07 56.3 3.5 23 309-331 3-25 (197)
268 2pbr_A DTMP kinase, thymidylat 96.1 0.003 1E-07 56.2 3.5 22 309-330 3-24 (195)
269 2gxq_A Heat resistant RNA depe 96.1 0.0087 3E-07 53.8 6.5 42 370-411 143-185 (207)
270 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.013 4.3E-07 57.2 8.0 90 308-412 173-276 (330)
271 2wwf_A Thymidilate kinase, put 96.1 0.0027 9.2E-08 57.5 3.0 25 308-332 12-36 (212)
272 2ewv_A Twitching motility prot 96.1 0.023 7.8E-07 56.3 9.9 24 308-331 138-161 (372)
273 1z47_A CYSA, putative ABC-tran 96.1 0.019 6.4E-07 56.3 9.1 43 370-412 162-207 (355)
274 1vpl_A ABC transporter, ATP-bi 96.1 0.024 8.3E-07 52.9 9.5 42 370-411 163-206 (256)
275 1cke_A CK, MSSA, protein (cyti 96.1 0.0045 1.5E-07 56.7 4.4 23 308-330 7-29 (227)
276 2r6a_A DNAB helicase, replicat 96.0 0.031 1.1E-06 57.0 11.1 24 309-332 206-229 (454)
277 3io5_A Recombination and repai 96.0 0.013 4.5E-07 56.0 7.6 24 309-332 31-54 (333)
278 2qor_A Guanylate kinase; phosp 96.0 0.0031 1E-07 56.9 3.1 23 308-330 14-36 (204)
279 1zp6_A Hypothetical protein AT 96.0 0.0026 8.9E-08 56.6 2.5 22 308-329 11-32 (191)
280 1hv8_A Putative ATP-dependent 96.0 0.015 5.3E-07 57.1 8.5 42 370-411 146-188 (367)
281 2grj_A Dephospho-COA kinase; T 96.0 0.0045 1.5E-07 55.2 3.9 22 309-330 15-36 (192)
282 2v3c_C SRP54, signal recogniti 96.0 0.018 6.2E-07 58.2 8.8 25 307-331 100-124 (432)
283 4b4t_H 26S protease regulatory 96.0 0.0078 2.7E-07 60.6 6.0 67 139-215 244-315 (467)
284 3ber_A Probable ATP-dependent 96.0 0.014 4.9E-07 54.3 7.5 41 370-410 185-226 (249)
285 3ly5_A ATP-dependent RNA helic 96.0 0.0094 3.2E-07 56.0 6.3 40 370-409 200-240 (262)
286 3crm_A TRNA delta(2)-isopenten 96.0 0.0046 1.6E-07 59.6 4.2 23 308-330 7-29 (323)
287 3d31_A Sulfate/molybdate ABC t 96.0 0.0043 1.5E-07 60.7 4.0 42 370-411 144-188 (348)
288 3fho_A ATP-dependent RNA helic 96.0 0.013 4.5E-07 60.8 7.9 42 370-411 258-301 (508)
289 3nwj_A ATSK2; P loop, shikimat 96.0 0.0053 1.8E-07 57.2 4.4 23 308-330 50-72 (250)
290 2it1_A 362AA long hypothetical 96.0 0.024 8.3E-07 55.7 9.4 43 370-412 150-195 (362)
291 1nn5_A Similar to deoxythymidy 95.9 0.0034 1.2E-07 56.9 3.0 24 308-331 11-34 (215)
292 3fmo_B ATP-dependent RNA helic 95.9 0.016 5.3E-07 55.7 7.8 41 370-410 234-276 (300)
293 2yyz_A Sugar ABC transporter, 95.9 0.023 7.8E-07 55.8 9.0 43 370-412 150-195 (359)
294 3tui_C Methionine import ATP-b 95.9 0.03 1E-06 54.9 9.7 43 370-412 180-225 (366)
295 3iuy_A Probable ATP-dependent 95.9 0.023 7.8E-07 51.9 8.5 41 370-410 166-207 (228)
296 2oxc_A Probable ATP-dependent 95.9 0.0077 2.6E-07 55.3 5.1 40 371-410 166-207 (230)
297 1u0j_A DNA replication protein 95.9 0.0066 2.2E-07 56.7 4.5 53 5-58 188-259 (267)
298 2v54_A DTMP kinase, thymidylat 95.9 0.0035 1.2E-07 56.3 2.7 23 308-330 6-28 (204)
299 3r20_A Cytidylate kinase; stru 95.8 0.0067 2.3E-07 55.7 4.4 23 308-330 11-33 (233)
300 1kgd_A CASK, peripheral plasma 95.8 0.0044 1.5E-07 54.6 3.2 23 308-330 7-29 (180)
301 4b4t_K 26S protease regulatory 95.8 0.0072 2.4E-07 60.8 5.0 65 141-215 209-278 (428)
302 2if2_A Dephospho-COA kinase; a 95.8 0.0042 1.4E-07 55.9 3.1 22 308-330 3-24 (204)
303 2bbw_A Adenylate kinase 4, AK4 95.8 0.005 1.7E-07 57.3 3.6 23 308-330 29-51 (246)
304 2bdt_A BH3686; alpha-beta prot 95.8 0.0048 1.6E-07 54.8 3.2 22 309-330 5-26 (189)
305 1ojl_A Transcriptional regulat 95.8 0.033 1.1E-06 53.5 9.4 92 5-96 135-246 (304)
306 1q0u_A Bstdead; DEAD protein, 95.8 0.0087 3E-07 54.4 5.0 42 370-411 149-191 (219)
307 3ake_A Cytidylate kinase; CMP 95.8 0.0074 2.5E-07 54.3 4.4 23 308-330 4-26 (208)
308 3c8u_A Fructokinase; YP_612366 95.7 0.0068 2.3E-07 54.8 4.0 24 308-331 24-47 (208)
309 1xti_A Probable ATP-dependent 95.7 0.027 9.4E-07 55.9 8.9 41 370-410 151-193 (391)
310 2pez_A Bifunctional 3'-phospho 95.7 0.006 2.1E-07 53.6 3.6 23 308-330 7-29 (179)
311 1s2m_A Putative ATP-dependent 95.7 0.042 1.4E-06 54.8 10.3 23 308-330 60-82 (400)
312 1jjv_A Dephospho-COA kinase; P 95.7 0.0057 2E-07 55.1 3.5 20 309-328 5-24 (206)
313 3tau_A Guanylate kinase, GMP k 95.7 0.0054 1.9E-07 55.5 3.2 23 308-330 10-32 (208)
314 2px0_A Flagellar biosynthesis 95.7 0.022 7.4E-07 54.5 7.6 24 308-331 107-130 (296)
315 1ex7_A Guanylate kinase; subst 95.7 0.0062 2.1E-07 53.9 3.4 23 308-330 3-25 (186)
316 3qf4_B Uncharacterized ABC tra 95.6 0.0055 1.9E-07 65.0 3.4 43 370-412 508-551 (598)
317 3eiq_A Eukaryotic initiation f 95.6 0.021 7.1E-07 57.3 7.5 41 370-410 182-223 (414)
318 2j41_A Guanylate kinase; GMP, 95.6 0.0061 2.1E-07 54.8 3.2 23 308-330 8-30 (207)
319 1z0j_A RAB-22, RAS-related pro 95.6 0.022 7.4E-07 48.9 6.6 23 308-330 8-30 (170)
320 3tr0_A Guanylate kinase, GMP k 95.6 0.0068 2.3E-07 54.4 3.4 23 308-330 9-31 (205)
321 3fht_A ATP-dependent RNA helic 95.5 0.034 1.2E-06 55.6 8.9 41 370-410 167-209 (412)
322 3dkp_A Probable ATP-dependent 95.5 0.026 8.8E-07 52.2 7.4 40 370-409 174-218 (245)
323 1m7g_A Adenylylsulfate kinase; 95.5 0.0074 2.5E-07 54.7 3.5 24 308-331 27-50 (211)
324 3bh0_A DNAB-like replicative h 95.5 0.083 2.8E-06 51.0 11.2 24 309-332 71-94 (315)
325 3k1j_A LON protease, ATP-depen 95.5 0.022 7.5E-07 60.5 7.6 96 4-99 249-372 (604)
326 1wp9_A ATP-dependent RNA helic 95.5 0.035 1.2E-06 56.6 8.9 24 308-331 25-48 (494)
327 2zts_A Putative uncharacterize 95.5 0.011 3.6E-07 54.9 4.4 22 309-330 33-54 (251)
328 3b5x_A Lipid A export ATP-bind 95.4 0.014 4.9E-07 61.6 5.9 43 370-412 497-540 (582)
329 2pl3_A Probable ATP-dependent 95.4 0.024 8.2E-07 52.1 6.8 41 370-410 170-211 (236)
330 2dyk_A GTP-binding protein; GT 95.4 0.079 2.7E-06 44.8 9.6 23 307-329 2-24 (161)
331 4f4c_A Multidrug resistance pr 95.4 0.0076 2.6E-07 69.9 3.9 45 370-414 571-616 (1321)
332 3qf4_A ABC transporter, ATP-bi 95.4 0.0087 3E-07 63.3 4.0 42 371-412 497-539 (587)
333 3a8t_A Adenylate isopentenyltr 95.4 0.0074 2.5E-07 58.4 3.0 23 308-330 42-64 (339)
334 3fe2_A Probable ATP-dependent 95.3 0.023 7.9E-07 52.5 6.3 41 370-410 175-216 (242)
335 2j0s_A ATP-dependent RNA helic 95.3 0.037 1.3E-06 55.4 8.2 41 370-410 178-219 (410)
336 2wsm_A Hydrogenase expression/ 95.3 0.0062 2.1E-07 55.5 2.2 41 290-330 14-54 (221)
337 1uj2_A Uridine-cytidine kinase 95.3 0.0088 3E-07 55.9 3.3 24 308-331 24-47 (252)
338 3a00_A Guanylate kinase, GMP k 95.3 0.0085 2.9E-07 53.1 3.0 22 309-330 4-25 (186)
339 1z0f_A RAB14, member RAS oncog 95.3 0.043 1.5E-06 47.5 7.6 23 308-330 17-39 (179)
340 1rz3_A Hypothetical protein rb 95.3 0.0097 3.3E-07 53.4 3.4 22 309-330 25-46 (201)
341 3ney_A 55 kDa erythrocyte memb 95.3 0.01 3.6E-07 52.9 3.4 23 308-330 21-43 (197)
342 1sky_E F1-ATPase, F1-ATP synth 95.3 0.021 7.1E-07 57.8 6.0 35 294-331 142-176 (473)
343 4e22_A Cytidylate kinase; P-lo 95.2 0.013 4.5E-07 54.7 4.2 23 308-330 29-51 (252)
344 3dz8_A RAS-related protein RAB 95.2 0.035 1.2E-06 48.9 6.9 23 308-330 25-47 (191)
345 3foz_A TRNA delta(2)-isopenten 95.2 0.012 4.3E-07 56.0 4.0 23 309-331 13-35 (316)
346 3d3q_A TRNA delta(2)-isopenten 95.2 0.013 4.4E-07 56.9 4.2 23 308-330 9-31 (340)
347 1vht_A Dephospho-COA kinase; s 95.2 0.013 4.5E-07 53.2 4.0 21 308-328 6-26 (218)
348 3t15_A Ribulose bisphosphate c 95.2 0.0071 2.4E-07 57.9 2.3 71 141-216 39-113 (293)
349 2zj8_A DNA helicase, putative 95.2 0.059 2E-06 58.5 9.8 24 307-330 40-64 (720)
350 3fmp_B ATP-dependent RNA helic 95.2 0.032 1.1E-06 57.3 7.4 42 370-411 234-277 (479)
351 1lvg_A Guanylate kinase, GMP k 95.2 0.012 4E-07 52.8 3.6 23 308-330 6-28 (198)
352 4eaq_A DTMP kinase, thymidylat 95.2 0.012 3.9E-07 54.2 3.5 24 308-331 28-51 (229)
353 2eyq_A TRCF, transcription-rep 95.1 0.067 2.3E-06 61.0 10.4 39 291-329 609-647 (1151)
354 1ltq_A Polynucleotide kinase; 95.1 0.011 3.7E-07 56.8 3.3 23 308-330 4-26 (301)
355 1uf9_A TT1252 protein; P-loop, 95.1 0.0099 3.4E-07 53.2 2.8 22 308-329 10-31 (203)
356 1wms_A RAB-9, RAB9, RAS-relate 95.1 0.033 1.1E-06 48.2 6.2 22 308-329 9-30 (177)
357 3exa_A TRNA delta(2)-isopenten 95.1 0.012 4.1E-07 56.2 3.5 24 308-331 5-28 (322)
358 2q6t_A DNAB replication FORK h 95.1 0.1 3.5E-06 53.0 10.7 35 309-345 203-237 (444)
359 2oca_A DAR protein, ATP-depend 95.1 0.046 1.6E-06 56.6 8.3 24 308-331 130-153 (510)
360 4dkx_A RAS-related protein RAB 95.1 0.045 1.5E-06 49.7 7.2 21 309-329 16-36 (216)
361 2v6i_A RNA helicase; membrane, 95.1 0.049 1.7E-06 55.2 8.2 23 308-330 4-27 (431)
362 1fuu_A Yeast initiation factor 95.1 0.033 1.1E-06 55.3 6.9 42 370-411 161-203 (394)
363 2efe_B Small GTP-binding prote 95.1 0.056 1.9E-06 46.9 7.6 22 308-329 14-35 (181)
364 2qmh_A HPR kinase/phosphorylas 95.1 0.0099 3.4E-07 52.7 2.6 23 308-330 36-58 (205)
365 1odf_A YGR205W, hypothetical 3 95.0 0.015 5.3E-07 55.4 4.1 23 309-331 34-56 (290)
366 2hup_A RAS-related protein RAB 95.0 0.063 2.2E-06 47.8 8.0 22 308-329 31-52 (201)
367 1u8z_A RAS-related protein RAL 95.0 0.042 1.4E-06 46.9 6.6 23 308-330 6-28 (168)
368 1gtv_A TMK, thymidylate kinase 95.0 0.0053 1.8E-07 55.6 0.7 23 309-331 3-25 (214)
369 1xjc_A MOBB protein homolog; s 95.0 0.016 5.5E-07 50.2 3.7 25 307-331 5-29 (169)
370 2fwr_A DNA repair protein RAD2 95.0 0.017 5.8E-07 59.3 4.6 23 308-330 110-132 (472)
371 2z43_A DNA repair and recombin 95.0 0.038 1.3E-06 53.6 6.8 24 308-331 109-132 (324)
372 2va8_A SSO2462, SKI2-type heli 95.0 0.019 6.5E-07 62.4 5.2 21 307-327 47-67 (715)
373 2h92_A Cytidylate kinase; ross 95.0 0.018 6.1E-07 52.3 4.2 23 308-330 5-27 (219)
374 2z0m_A 337AA long hypothetical 95.0 0.051 1.7E-06 52.6 7.8 22 308-329 33-54 (337)
375 3tqc_A Pantothenate kinase; bi 94.9 0.026 8.9E-07 54.5 5.5 23 309-331 95-117 (321)
376 2ehv_A Hypothetical protein PH 94.9 0.016 5.6E-07 53.6 4.0 22 308-329 32-53 (251)
377 3asz_A Uridine kinase; cytidin 94.9 0.013 4.3E-07 53.0 3.0 22 309-330 9-30 (211)
378 4gzl_A RAS-related C3 botulinu 94.9 0.014 4.7E-07 52.4 3.2 24 307-330 31-54 (204)
379 4a1f_A DNAB helicase, replicat 94.9 0.066 2.3E-06 52.0 8.2 24 309-332 49-72 (338)
380 1z2a_A RAS-related protein RAB 94.9 0.023 7.8E-07 48.7 4.5 23 308-330 7-29 (168)
381 1q3t_A Cytidylate kinase; nucl 94.8 0.024 8.1E-07 52.3 4.8 23 308-330 18-40 (236)
382 2ce2_X GTPase HRAS; signaling 94.8 0.038 1.3E-06 47.0 5.9 23 308-330 5-27 (166)
383 2bov_A RAla, RAS-related prote 94.8 0.06 2.1E-06 47.9 7.4 23 308-330 16-38 (206)
384 2f6r_A COA synthase, bifunctio 94.8 0.014 4.9E-07 55.4 3.3 20 309-328 78-97 (281)
385 4a82_A Cystic fibrosis transme 94.8 0.039 1.3E-06 58.2 6.9 43 371-413 495-538 (578)
386 1zbd_A Rabphilin-3A; G protein 94.8 0.064 2.2E-06 47.7 7.5 22 308-329 10-31 (203)
387 1ls1_A Signal recognition part 94.8 0.22 7.5E-06 47.4 11.5 25 308-332 100-124 (295)
388 2qt1_A Nicotinamide riboside k 94.8 0.011 3.6E-07 53.4 2.2 23 308-330 23-45 (207)
389 4f4c_A Multidrug resistance pr 94.8 0.012 4E-07 68.3 3.0 44 371-414 1235-1279(1321)
390 1r2q_A RAS-related protein RAB 94.8 0.051 1.8E-06 46.5 6.6 22 308-329 8-29 (170)
391 3tkl_A RAS-related protein RAB 94.8 0.049 1.7E-06 48.1 6.6 23 308-330 18-40 (196)
392 1kao_A RAP2A; GTP-binding prot 94.8 0.06 2E-06 45.8 7.0 23 308-330 5-27 (167)
393 1ek0_A Protein (GTP-binding pr 94.8 0.053 1.8E-06 46.4 6.6 23 308-330 5-27 (170)
394 1g8f_A Sulfate adenylyltransfe 94.8 0.016 5.4E-07 59.7 3.6 25 308-332 397-421 (511)
395 3con_A GTPase NRAS; structural 94.8 0.055 1.9E-06 47.5 6.8 23 308-330 23-45 (190)
396 3l9o_A ATP-dependent RNA helic 94.7 0.034 1.2E-06 63.1 6.6 39 371-409 290-329 (1108)
397 3q72_A GTP-binding protein RAD 94.7 0.033 1.1E-06 47.6 5.2 21 308-328 4-24 (166)
398 3b60_A Lipid A export ATP-bind 94.7 0.013 4.3E-07 62.0 2.9 43 371-413 498-541 (582)
399 1ewq_A DNA mismatch repair pro 94.7 0.049 1.7E-06 59.1 7.4 100 308-411 578-698 (765)
400 3bc1_A RAS-related protein RAB 94.7 0.068 2.3E-06 46.9 7.3 22 308-329 13-34 (195)
401 2j37_W Signal recognition part 94.7 0.19 6.3E-06 51.7 11.4 25 308-332 103-127 (504)
402 3o8b_A HCV NS3 protease/helica 94.7 0.063 2.1E-06 57.0 8.0 29 370-398 317-345 (666)
403 2hf9_A Probable hydrogenase ni 94.7 0.014 5E-07 53.1 2.8 37 296-332 28-64 (226)
404 1z06_A RAS-related protein RAB 94.6 0.075 2.6E-06 46.7 7.4 22 308-329 22-43 (189)
405 1htw_A HI0065; nucleotide-bind 94.6 0.02 6.8E-07 49.2 3.3 23 308-330 35-57 (158)
406 4edh_A DTMP kinase, thymidylat 94.6 0.037 1.3E-06 50.1 5.2 26 308-333 8-33 (213)
407 3clv_A RAB5 protein, putative; 94.5 0.073 2.5E-06 47.1 7.2 22 308-329 9-30 (208)
408 1np6_A Molybdopterin-guanine d 94.5 0.024 8.2E-07 49.5 3.7 25 307-331 7-31 (174)
409 1z6g_A Guanylate kinase; struc 94.5 0.019 6.4E-07 52.3 3.1 23 308-330 25-47 (218)
410 1svi_A GTP-binding protein YSX 94.5 0.18 6.1E-06 44.3 9.7 24 306-329 23-46 (195)
411 3pqc_A Probable GTP-binding pr 94.5 0.19 6.4E-06 44.0 9.7 23 307-329 24-46 (195)
412 2nzj_A GTP-binding protein REM 94.5 0.083 2.9E-06 45.4 7.2 22 308-329 6-27 (175)
413 2a9k_A RAS-related protein RAL 94.5 0.061 2.1E-06 46.9 6.4 23 308-330 20-42 (187)
414 1znw_A Guanylate kinase, GMP k 94.5 0.02 6.7E-07 51.6 3.1 23 308-330 22-44 (207)
415 1m7b_A RND3/RHOE small GTP-bin 94.5 0.024 8.2E-07 49.7 3.7 23 308-330 9-31 (184)
416 1mh1_A RAC1; GTP-binding, GTPa 94.5 0.035 1.2E-06 48.4 4.8 23 308-330 7-29 (186)
417 3bgw_A DNAB-like replicative h 94.5 0.19 6.3E-06 51.0 10.7 25 309-333 200-224 (444)
418 3tw8_B RAS-related protein RAB 94.5 0.017 5.7E-07 50.3 2.6 21 308-328 11-31 (181)
419 1s96_A Guanylate kinase, GMP k 94.4 0.02 6.9E-07 52.1 3.2 22 309-330 19-40 (219)
420 4dsu_A GTPase KRAS, isoform 2B 94.4 0.074 2.5E-06 46.4 6.7 23 308-330 6-28 (189)
421 4a4z_A Antiviral helicase SKI2 94.3 0.034 1.2E-06 62.4 5.4 41 370-410 146-187 (997)
422 3ld9_A DTMP kinase, thymidylat 94.3 0.026 8.8E-07 51.4 3.6 25 308-332 23-47 (223)
423 2whx_A Serine protease/ntpase/ 94.3 0.048 1.6E-06 57.9 6.2 39 370-408 276-315 (618)
424 1r8s_A ADP-ribosylation factor 94.3 0.25 8.7E-06 41.7 9.9 23 308-330 2-24 (164)
425 3gmt_A Adenylate kinase; ssgci 94.3 0.029 9.8E-07 51.2 3.8 22 309-330 11-32 (230)
426 2jeo_A Uridine-cytidine kinase 94.3 0.025 8.7E-07 52.4 3.5 22 309-330 28-49 (245)
427 2g6b_A RAS-related protein RAB 94.3 0.077 2.6E-06 45.9 6.5 23 308-330 12-34 (180)
428 3kkq_A RAS-related protein M-R 94.2 0.059 2E-06 46.9 5.7 23 308-330 20-42 (183)
429 2bme_A RAB4A, RAS-related prot 94.2 0.057 2E-06 47.1 5.6 23 308-330 12-34 (186)
430 2il1_A RAB12; G-protein, GDP, 94.2 0.066 2.3E-06 47.2 6.0 22 308-329 28-49 (192)
431 3q3j_B RHO-related GTP-binding 94.2 0.037 1.3E-06 50.0 4.4 23 308-330 29-51 (214)
432 3q85_A GTP-binding protein REM 94.2 0.058 2E-06 46.2 5.5 20 308-327 4-23 (169)
433 3t1o_A Gliding protein MGLA; G 94.2 0.12 4.3E-06 45.3 7.9 23 308-330 16-38 (198)
434 3cf0_A Transitional endoplasmi 94.2 0.15 5E-06 48.8 8.9 79 5-84 152-234 (301)
435 3lnc_A Guanylate kinase, GMP k 94.2 0.015 5.1E-07 53.4 1.8 23 308-330 29-52 (231)
436 2v9p_A Replication protein E1; 94.2 0.03 1E-06 53.6 3.8 23 308-330 128-150 (305)
437 2r62_A Cell division protease 94.2 0.036 1.2E-06 52.0 4.4 92 6-98 150-249 (268)
438 1c1y_A RAS-related protein RAP 94.2 0.062 2.1E-06 45.8 5.6 22 308-329 5-26 (167)
439 1gwn_A RHO-related GTP-binding 94.1 0.03 1E-06 50.2 3.7 23 308-330 30-52 (205)
440 2p5s_A RAS and EF-hand domain 94.1 0.064 2.2E-06 47.6 5.8 22 308-329 30-51 (199)
441 1gm5_A RECG; helicase, replica 94.1 0.063 2.1E-06 58.4 6.7 42 289-330 372-413 (780)
442 2fg5_A RAB-22B, RAS-related pr 94.1 0.075 2.6E-06 46.8 6.2 23 308-330 25-47 (192)
443 3eph_A TRNA isopentenyltransfe 94.1 0.031 1.1E-06 55.4 3.8 22 309-330 5-26 (409)
444 3thx_A DNA mismatch repair pro 94.1 0.099 3.4E-06 57.9 8.3 22 308-329 664-685 (934)
445 1yks_A Genome polyprotein [con 94.1 0.072 2.5E-06 54.1 6.7 23 308-330 10-33 (440)
446 1w5s_A Origin recognition comp 94.1 0.095 3.2E-06 52.4 7.6 91 6-96 178-287 (412)
447 2p6r_A Afuhel308 helicase; pro 94.1 0.076 2.6E-06 57.5 7.3 41 370-410 137-181 (702)
448 3reg_A RHO-like small GTPase; 94.1 0.035 1.2E-06 49.1 4.0 23 308-330 25-47 (194)
449 3v9p_A DTMP kinase, thymidylat 94.1 0.024 8.3E-07 51.8 2.9 25 308-332 27-51 (227)
450 3fdi_A Uncharacterized protein 94.1 0.031 1.1E-06 50.1 3.5 23 308-330 8-30 (201)
451 1g16_A RAS-related protein SEC 94.1 0.043 1.5E-06 47.0 4.4 22 308-329 5-26 (170)
452 2fh5_B SR-beta, signal recogni 94.1 0.17 5.7E-06 45.4 8.5 24 307-330 8-31 (214)
453 2ew1_A RAS-related protein RAB 94.1 0.06 2.1E-06 48.1 5.4 23 308-330 28-50 (201)
454 1nlf_A Regulatory protein REPA 94.0 0.025 8.6E-07 53.6 3.0 24 308-331 32-55 (279)
455 2xgj_A ATP-dependent RNA helic 94.0 0.068 2.3E-06 60.1 6.9 22 308-329 103-124 (1010)
456 3lxw_A GTPase IMAP family memb 94.0 0.24 8.2E-06 45.8 9.6 22 308-329 23-44 (247)
457 1z63_A Helicase of the SNF2/RA 94.0 0.092 3.1E-06 54.2 7.4 101 308-412 58-189 (500)
458 3thx_B DNA mismatch repair pro 94.0 0.1 3.5E-06 57.6 8.0 100 308-412 675-797 (918)
459 1zd9_A ADP-ribosylation factor 93.9 0.15 5.2E-06 44.6 7.9 23 308-330 24-46 (188)
460 1rj9_A FTSY, signal recognitio 93.9 0.038 1.3E-06 53.0 4.0 24 308-331 104-127 (304)
461 1wrb_A DJVLGB; RNA helicase, D 93.9 0.14 4.9E-06 47.3 8.0 19 308-326 62-80 (253)
462 3tqf_A HPR(Ser) kinase; transf 93.8 0.028 9.7E-07 48.5 2.6 22 308-329 18-39 (181)
463 2xxa_A Signal recognition part 93.8 0.49 1.7E-05 47.6 12.2 26 308-333 102-127 (433)
464 3llu_A RAS-related GTP-binding 93.8 0.055 1.9E-06 48.0 4.7 43 371-414 97-142 (196)
465 2atx_A Small GTP binding prote 93.8 0.05 1.7E-06 48.0 4.4 23 308-330 20-42 (194)
466 2a5j_A RAS-related protein RAB 93.8 0.078 2.7E-06 46.7 5.7 21 309-329 24-44 (191)
467 1cr0_A DNA primase/helicase; R 93.8 0.029 9.9E-07 53.6 3.0 25 308-332 37-61 (296)
468 2j1l_A RHO-related GTP-binding 93.8 0.043 1.5E-06 49.5 4.0 22 308-329 36-57 (214)
469 1m8p_A Sulfate adenylyltransfe 93.8 0.037 1.3E-06 58.0 4.0 23 309-331 399-421 (573)
470 1a7j_A Phosphoribulokinase; tr 93.8 0.019 6.3E-07 54.9 1.5 24 308-331 7-30 (290)
471 1upt_A ARL1, ADP-ribosylation 93.8 0.17 5.7E-06 43.3 7.7 22 308-329 9-30 (171)
472 3aez_A Pantothenate kinase; tr 93.8 0.035 1.2E-06 53.5 3.5 23 309-331 93-115 (312)
473 3lxx_A GTPase IMAP family memb 93.8 0.13 4.5E-06 47.2 7.3 23 308-330 31-53 (239)
474 2z83_A Helicase/nucleoside tri 93.7 0.16 5.5E-06 51.8 8.6 23 308-330 23-46 (459)
475 1ixz_A ATP-dependent metallopr 93.7 0.31 1.1E-05 45.1 10.0 90 6-97 153-251 (254)
476 1vma_A Cell division protein F 93.7 0.038 1.3E-06 53.1 3.6 24 308-331 106-129 (306)
477 1x3s_A RAS-related protein RAB 93.7 0.078 2.7E-06 46.6 5.5 23 308-330 17-39 (195)
478 2fu5_C RAS-related protein RAB 93.7 0.055 1.9E-06 47.1 4.4 22 308-329 10-31 (183)
479 2p65_A Hypothetical protein PF 93.6 0.021 7.3E-07 49.9 1.6 107 101-215 11-128 (187)
480 3cph_A RAS-related protein SEC 93.6 0.097 3.3E-06 46.8 6.1 22 308-329 22-43 (213)
481 1iy2_A ATP-dependent metallopr 93.6 0.35 1.2E-05 45.5 10.2 90 6-97 177-275 (278)
482 2axn_A 6-phosphofructo-2-kinas 93.6 0.037 1.3E-06 57.4 3.6 23 309-331 38-60 (520)
483 2jlq_A Serine protease subunit 93.6 0.17 5.7E-06 51.5 8.4 22 308-329 21-43 (451)
484 3lv8_A DTMP kinase, thymidylat 93.6 0.035 1.2E-06 51.1 3.0 26 308-333 29-54 (236)
485 2bcg_Y Protein YP2, GTP-bindin 93.6 0.072 2.5E-06 47.5 5.0 23 308-330 10-32 (206)
486 1wb9_A DNA mismatch repair pro 93.6 0.37 1.3E-05 52.5 11.5 23 308-330 609-631 (800)
487 2yc2_C IFT27, small RAB-relate 93.5 0.077 2.6E-06 47.2 5.2 22 308-329 22-43 (208)
488 1g41_A Heat shock protein HSLU 93.5 0.12 4.2E-06 52.0 7.1 80 5-84 300-405 (444)
489 2ocp_A DGK, deoxyguanosine kin 93.5 0.032 1.1E-06 51.5 2.6 23 308-330 4-26 (241)
490 3gee_A MNME, tRNA modification 93.4 0.51 1.8E-05 48.1 11.7 22 308-329 235-256 (476)
491 2f7s_A C25KG, RAS-related prot 93.3 0.097 3.3E-06 47.1 5.6 22 308-329 27-48 (217)
492 2oap_1 GSPE-2, type II secreti 93.3 0.029 9.8E-07 58.0 2.2 35 294-330 250-284 (511)
493 2gf0_A GTP-binding protein DI- 93.3 0.1 3.6E-06 46.0 5.7 22 308-329 10-31 (199)
494 3tmk_A Thymidylate kinase; pho 93.3 0.041 1.4E-06 49.8 3.0 24 308-331 7-30 (216)
495 2e87_A Hypothetical protein PH 93.3 0.35 1.2E-05 47.4 9.9 23 307-329 168-190 (357)
496 3hdt_A Putative kinase; struct 93.3 0.052 1.8E-06 49.5 3.6 23 308-330 16-38 (223)
497 3ozx_A RNAse L inhibitor; ATP 93.3 0.073 2.5E-06 55.4 5.1 100 309-410 28-196 (538)
498 3b9q_A Chloroplast SRP recepto 93.3 0.049 1.7E-06 52.2 3.5 24 308-331 102-125 (302)
499 2gco_A H9, RHO-related GTP-bin 93.3 0.062 2.1E-06 47.8 4.1 23 308-330 27-49 (201)
500 4tmk_A Protein (thymidylate ki 93.2 0.045 1.5E-06 49.5 3.0 26 308-333 5-30 (213)
No 1
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.93 E-value=8.3e-25 Score=218.51 Aligned_cols=238 Identities=47% Similarity=0.783 Sum_probs=195.7
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccC
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTM 367 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (533)
.|++.+...+..++..+..+|++|+|||||||||+++++++.+.+.. ....+..+++++..+.+.+++.++.+.+....
T Consensus 28 ~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~ 106 (340)
T 1sxj_C 28 YGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN-YSNMVLELNASDDRGIDVVRNQIKDFASTRQI 106 (340)
T ss_dssp CSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS-HHHHEEEECTTSCCSHHHHHTHHHHHHHBCCS
T ss_pred cCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-ccceEEEEcCcccccHHHHHHHHHHHHhhccc
Confidence 45677777788888888888999999999999999999999987653 23467888888777778888877777654433
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC-----
Q psy4285 368 HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD----- 442 (533)
Q Consensus 368 ~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~----- 442 (533)
..++++++||||+|.++.+.+++|++++|+++.++.+|++||.+..++++++|||..+.|.+++.+++.+++.++
T Consensus 107 ~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~ 186 (340)
T 1sxj_C 107 FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEK 186 (340)
T ss_dssp SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcC
Confidence 345689999999999999999999999999999999999999999999999999999999999999999888743
Q ss_pred ------------------------------------------------------HHHHHHHHHH---------HHHHHHH
Q psy4285 443 ------------------------------------------------------DISFFNIIIW---------YIKIQEI 459 (533)
Q Consensus 443 ------------------------------------------------------~~~~~~ll~~---------~~~l~~l 459 (533)
+..+.++++. ...+..+
T Consensus 187 ~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~~~~~~~i~~l~~~i~~~~~~~al~~l~~l 266 (340)
T 1sxj_C 187 LKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKV 266 (340)
T ss_dssp CCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTTCCCHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1122222222 3334444
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhHh
Q psy4285 460 KIEKGLALTDILTEISLLVHRLEIP-ESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKL 526 (533)
Q Consensus 460 ~~~~~~~~~di~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~~~~~~~~~~~~ 526 (533)
....|+++.+++..+...++...++ ...+..++..+.++++++..|+++.++++.|+.+++.+....
T Consensus 267 ~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~l~~~l~~~~~~~ 334 (340)
T 1sxj_C 267 RSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQGSAVIGAIKASFENE 334 (340)
T ss_dssp HHTTTCCHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-
T ss_pred HHHcCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhhc
Confidence 3327999999999999998887777 888899999999999999999999999999999998876543
No 2
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.92 E-value=4.9e-24 Score=207.77 Aligned_cols=231 Identities=15% Similarity=0.130 Sum_probs=178.7
Q ss_pred hchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCC-CCchhHHHHHHHHHHhcccC
Q psy4285 289 ESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD-DRGIGIVRDQIFQFASTKTM 367 (533)
Q Consensus 289 ~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 367 (533)
||++++..+...++.++.|++||+||||+|||++|+++++.+.........+..+++++ ..+.+.+++.+..+... +.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~-p~ 79 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYS-PE 79 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSC-CS
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhc-cc
Confidence 56778888888888888667999999999999999999987421111244678888764 57788899877665433 32
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC-----
Q psy4285 368 HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD----- 442 (533)
Q Consensus 368 ~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~----- 442 (533)
.++++|+||||+|+|+.+++++|++.||+|++++.||++|+.+.++.|+++|| .+.|.+++++++.+++.+.
T Consensus 80 -~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~~~L~~~~~i~~ 156 (305)
T 2gno_A 80 -LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFRDLVKEKIGDLW 156 (305)
T ss_dssp -SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHHHHHHHHHTTHH
T ss_pred -cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHHHHHHHHhCCCH
Confidence 35789999999999999999999999999999999999999999999999999 9999999999999988664
Q ss_pred ---------HH-----------------------------------------HHHHHHHH---------HHHHHHHHHh-
Q psy4285 443 ---------DI-----------------------------------------SFFNIIIW---------YIKIQEIKIE- 462 (533)
Q Consensus 443 ---------~~-----------------------------------------~~~~ll~~---------~~~l~~l~~~- 462 (533)
+. ++.++++. +..+.++...
T Consensus 157 ~~~~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~v~~l~~ai~~~~~~~a~~~~~~l~~~~ 236 (305)
T 2gno_A 157 EELPLLERDFKTALEAYKLGAEKLSGLMESLKVLETEKLLKKVLSKGLEGYLACRELLERFSKVESKEFFALFDQVTNTI 236 (305)
T ss_dssp HHCGGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTTCSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHccCCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 00 22222222 3445555433
Q ss_pred cCCCHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHHhH
Q psy4285 463 KGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAA---GTSEKIQLSALIAAFNSARDK 525 (533)
Q Consensus 463 ~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---g~~~~~~l~~~~~~~~~~~~~ 525 (533)
.|+++.+++..+++.+...+ ...+.+.++.++.+++++.. |.++.++++++++++....+-
T Consensus 237 ~g~~~~~~i~~~~r~l~~~~--~~~~~~~l~~~~~~~~~~~~k~~g~~~~lql~~l~~~~~~~~~~ 300 (305)
T 2gno_A 237 TGKDAFLLIQRLTRIILHEN--TWESVEDQKSVSFLDSILRVKIANLNNKLTLMNILAIHRERKRG 300 (305)
T ss_dssp CTHHHHHHHHHHHHHHHHTS--CCCSHHHHHHHHHHHHHHTCCGGGCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCHHHHHHHHHHHHHhhc--hhhhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence 67777788888887776443 33446677799999999999 999999999999999866543
No 3
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.91 E-value=2.7e-23 Score=206.47 Aligned_cols=235 Identities=43% Similarity=0.688 Sum_probs=189.2
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccC
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTM 367 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (533)
.|++.....+..++..+..+|++|+||||||||++|+++++.+.+.. ....++.+++++..+.+.+++.+..+....+.
T Consensus 28 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (327)
T 1iqp_A 28 VGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN-WRHNFLELNASDERGINVIREKVKEFARTKPI 106 (327)
T ss_dssp CSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-HHHHEEEEETTCHHHHHTTHHHHHHHHHSCCG
T ss_pred hCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCceEEeeccccCchHHHHHHHHHHHhhCCc
Confidence 45666667777777777778899999999999999999999986542 23457788887765556666666666544333
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC-----
Q psy4285 368 HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD----- 442 (533)
Q Consensus 368 ~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~----- 442 (533)
..++++++||||+|.++.+.+++|++.+++++.++++|++||.+..+++++.+||..+.|.+++.+++..++.++
T Consensus 107 ~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~ 186 (327)
T 1iqp_A 107 GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG 186 (327)
T ss_dssp GGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcC
Confidence 235689999999999999999999999999989999999999999999999999999999999999999888753
Q ss_pred -------------------------------------------------HHHHHHHHHH---------HHHHHHHHHhcC
Q psy4285 443 -------------------------------------------------DISFFNIIIW---------YIKIQEIKIEKG 464 (533)
Q Consensus 443 -------------------------------------------------~~~~~~ll~~---------~~~l~~l~~~~~ 464 (533)
+.++.++++. ...+..+....|
T Consensus 187 ~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ll~~~g 266 (327)
T 1iqp_A 187 LELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLALKGNFLKAREKLREILLKQG 266 (327)
T ss_dssp CEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSEECHHHHHHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Confidence 2222222222 233333322569
Q ss_pred CCHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q psy4285 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523 (533)
Q Consensus 465 ~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~~~~~~~~~ 523 (533)
.++.+++..+...++...|+......++..+.++++++..|+++.++++.|+.+++.+.
T Consensus 267 ~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~~~ 325 (327)
T 1iqp_A 267 LSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGANEIIQLEALLAQFTLIG 325 (327)
T ss_dssp CCHHHHHHHHHHHGGGSSSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 99999999999888877789999999999999999999999999999999999998765
No 4
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.91 E-value=3.1e-23 Score=205.20 Aligned_cols=236 Identities=36% Similarity=0.635 Sum_probs=190.4
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccC
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTM 367 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (533)
.|++.....+..++..+..++++|+||||||||++|+++++.+.+.. ....++.+++++..+.+.+++.+..+....+.
T Consensus 20 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (319)
T 2chq_A 20 VGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERGIDVVRHKIKEFARTAPI 98 (319)
T ss_dssp CSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-HHHHCEEEETTSTTCTTTSSHHHHHHHHSCCS
T ss_pred hCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-ccCCeEEEeCccccChHHHHHHHHHHHhcCCC
Confidence 46677777888888888888899999999999999999999986543 23457788887766666666666666533333
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC-----
Q psy4285 368 HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD----- 442 (533)
Q Consensus 368 ~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~----- 442 (533)
..+.++++||||+|.++.+.++.|++.+++++.++++|++||.+..+++++.+||..+.|.+++.+++.+++.++
T Consensus 99 ~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~ 178 (319)
T 2chq_A 99 GGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEG 178 (319)
T ss_dssp SSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 235689999999999999999999999999889999999999999999999999999999999999999988753
Q ss_pred -------------------------------------------------HHHHHHHHHH---------HHHHHHHHHhcC
Q psy4285 443 -------------------------------------------------DISFFNIIIW---------YIKIQEIKIEKG 464 (533)
Q Consensus 443 -------------------------------------------------~~~~~~ll~~---------~~~l~~l~~~~~ 464 (533)
+.++.++++. ...+..+....|
T Consensus 179 ~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~~g 258 (319)
T 2chq_A 179 VKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALKGNFMEARELLDRLMVEYG 258 (319)
T ss_dssp CCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSSSCBCHHHHHHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcC
Confidence 1112222221 233444433369
Q ss_pred CCHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHh
Q psy4285 465 LALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524 (533)
Q Consensus 465 ~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~~~~~~~~~~ 524 (533)
.++.+++..+.+.++...|+.....+++..+.+++.++..|+++.++++.++.+++.++.
T Consensus 259 ~~~~~i~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~~~~ 318 (319)
T 2chq_A 259 MSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLSTLAK 318 (319)
T ss_dssp CCHHHHHHHHHHHHHTSCSCTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 999999999998888767888889999999999999999999999999999999987653
No 5
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.90 E-value=6.7e-22 Score=198.71 Aligned_cols=236 Identities=25% Similarity=0.426 Sum_probs=178.4
Q ss_pred hhchhhhhhhcccc-cccCCCceeEeCCCCCChHHHHHHHHHHHcccccc-----------------------CcceEEe
Q psy4285 288 NESMDLCYKINRFI-DENELPHLLFYGPPGTGKTTTILACARKLYTKAQF-----------------------NAMVLEL 343 (533)
Q Consensus 288 ~~~~~~~~~l~~~~-~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~-----------------------~~~~~~~ 343 (533)
.|++.+...+..++ ..+..+|++|+||||+||||+++++++.+.++... ...++.+
T Consensus 17 vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (354)
T 1sxj_E 17 SHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEI 96 (354)
T ss_dssp CSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEE
T ss_pred cCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEe
Confidence 46777777888888 77777889999999999999999999987654310 0123445
Q ss_pred cCCCCCchh--HHHHHHHHHHhcccCC--------CCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy4285 344 NASDDRGIG--IVRDQIFQFASTKTMH--------KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413 (533)
Q Consensus 344 ~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~ 413 (533)
++++..... .+++.+..+....... ..+++++||||++.++...+++|++.+++++.++.+|++|+.+..
T Consensus 97 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 97 TPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp CCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred cHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 544322111 3566666554432211 236889999999999999999999999999889999999999999
Q ss_pred CChhhhccceeeeecCCCHHHHHHHhhcC--------H------------------------------------------
Q psy4285 414 IPPAIQSRCTRFRFGPLDSSLIMSRLDYD--------D------------------------------------------ 443 (533)
Q Consensus 414 l~~~l~sR~~~i~~~~~~~~~~~~~l~~~--------~------------------------------------------ 443 (533)
++++++|||..+.|.+++.+++.+++.++ +
T Consensus 177 l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~~~~~~~i~~~~~~~~ 256 (354)
T 1sxj_E 177 IIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIK 256 (354)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHTTTTEECSSCCCCC
T ss_pred HHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCcCcCcCCCC
Confidence 99999999999999999999999998753 0
Q ss_pred ----HHHHHHHHH-------------HHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHhCC
Q psy4285 444 ----ISFFNIIIW-------------YIKIQEIKIEKGLALTDILTEISLLVHRL-EIPESMLVDLVLKMSDIEYRLAAG 505 (533)
Q Consensus 444 ----~~~~~ll~~-------------~~~l~~l~~~~~~~~~di~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g 505 (533)
..+.++++. +..+..+ ...|+++.+++..+...+... .+++..+.+++..++++++++..|
T Consensus 257 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l-~~~g~~~~~i~~~l~~~~~~~~~~~~~~l~~~~~~l~~~d~~l~~g 335 (354)
T 1sxj_E 257 PDWIIVIHKLTRKIVKERSVNSLIECRAVLYDL-LAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLG 335 (354)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH-HTTTCCHHHHHHHHHHTTTTCTTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 112222221 1122222 336899999998888776654 478899999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHh
Q psy4285 506 TSEKIQLSALIAAFNSARD 524 (533)
Q Consensus 506 ~~~~~~l~~~~~~~~~~~~ 524 (533)
.++.++++.|+++++.+++
T Consensus 336 ~~~~~~le~~~~~~~~~~~ 354 (354)
T 1sxj_E 336 NKAIFHLEGFIAKVMCCLD 354 (354)
T ss_dssp SCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999998753
No 6
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.89 E-value=7.9e-22 Score=198.07 Aligned_cols=233 Identities=36% Similarity=0.617 Sum_probs=180.8
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhccc-
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKT- 366 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 366 (533)
.|+++..+.+..++..+..+|++|+||||||||++++++++.+.+.......+..+++++..+...+++.+..+.....
T Consensus 40 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (353)
T 1sxj_D 40 TAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVS 119 (353)
T ss_dssp CSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCC
T ss_pred hCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhccc
Confidence 5677778888888888877889999999999999999999998654323456788888876677767666655543211
Q ss_pred ---------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHH
Q psy4285 367 ---------MHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMS 437 (533)
Q Consensus 367 ---------~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~ 437 (533)
.....+++++|||+|.++...+++|++.+++++.++++|++||.+..+++++++||..+.|.+++.+++..
T Consensus 120 ~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~ 199 (353)
T 1sxj_D 120 KPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAID 199 (353)
T ss_dssp CCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHH
T ss_pred ccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHH
Confidence 01245689999999999999999999999999889999999999999999999999999999999999999
Q ss_pred HhhcC---------HHHHHHHHHH--------------------------------------------------------
Q psy4285 438 RLDYD---------DISFFNIIIW-------------------------------------------------------- 452 (533)
Q Consensus 438 ~l~~~---------~~~~~~ll~~-------------------------------------------------------- 452 (533)
++.++ ++.+..+.+.
T Consensus 200 ~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~~~~~~ 279 (353)
T 1sxj_D 200 RLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGD 279 (353)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHTCCCSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhCCCCHHHHHHHHHHHhcCC
Confidence 98763 1111111111
Q ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q psy4285 453 ----YIKIQEIKIEKGLALTDILTEISLLVHRL-EIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNS 521 (533)
Q Consensus 453 ----~~~l~~l~~~~~~~~~di~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~~~~~~~ 521 (533)
...+..+ ...|.++.+++..+.+.+... .+++..+..++..++++++++..|+++.++++.|++++++
T Consensus 280 ~~~a~~~l~~l-~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~l~~~~~~~~~ 352 (353)
T 1sxj_D 280 FDEIKKYVNTF-MKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKISQ 352 (353)
T ss_dssp HHHHHHHHHHH-HHTSCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Confidence 1111112 234666666777777766554 5778888899999999999999999999999999999875
No 7
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.89 E-value=1.7e-21 Score=193.28 Aligned_cols=226 Identities=19% Similarity=0.249 Sum_probs=170.7
Q ss_pred hhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhccc
Q psy4285 288 NESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKT 366 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (533)
.|++.....+..++..+..++ ++++||||||||++++++++.+ +..++++++++. +.+.+++.+..+....+
T Consensus 29 vg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l------~~~~~~i~~~~~-~~~~i~~~~~~~~~~~~ 101 (324)
T 3u61_B 29 ILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV------NADMMFVNGSDC-KIDFVRGPLTNFASAAS 101 (324)
T ss_dssp CCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT------TEEEEEEETTTC-CHHHHHTHHHHHHHBCC
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh------CCCEEEEccccc-CHHHHHHHHHHHHhhcc
Confidence 466677777888888888777 5777889999999999999988 667888998774 36677777776665543
Q ss_pred CCCCCcEEEEEeCCCCCC-HHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC---
Q psy4285 367 MHKSSYKLIILDEADAMT-NDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD--- 442 (533)
Q Consensus 367 ~~~~~~~vliiDE~d~l~-~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~--- 442 (533)
. .+.++++||||+|.++ .+.++.|++.+++++.++++|++||.+..++++++|||..+.|.+|+.++..+++..+
T Consensus 102 ~-~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 180 (324)
T 3u61_B 102 F-DGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRR 180 (324)
T ss_dssp C-SSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred c-CCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 2 3478999999999999 9999999999999888999999999999999999999999999999988743332221
Q ss_pred -------------H-HHHHHHHHH-----------------------------------------------H-HHHHHHH
Q psy4285 443 -------------D-ISFFNIIIW-----------------------------------------------Y-IKIQEIK 460 (533)
Q Consensus 443 -------------~-~~~~~ll~~-----------------------------------------------~-~~l~~l~ 460 (533)
+ +.+..++.. . ..+..+.
T Consensus 181 l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~~~~~i~~~~v~~~~~~~~~i~~~~~~~~~~~~~~a~~~~~ 260 (324)
T 3u61_B 181 LTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYSSKGVLDAGILSLVTNDRGAIDDVLESLKNKDVKQLRALAP 260 (324)
T ss_dssp HHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHGGGTCBCC------------CHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHhccCCCCHHHHHHHhCCHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2 222222222 0 0000000
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Q psy4285 461 IEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523 (533)
Q Consensus 461 ~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~~~~~~~~~ 523 (533)
..-. ++.+++..+...+.. .+++....+++..++..++++..|.++.++++.|++++|..+
T Consensus 261 ~l~~-~~~~i~~~l~~~~~~-~~~~~~l~~i~~~l~~~d~~l~~g~~~~~~le~~~~~~~~~~ 321 (324)
T 3u61_B 261 KYAA-DYSWFVGKLAEEIYS-RVTPQSIIRMYEIVGENNQYHGIAANTELHLAYLFIQLACEM 321 (324)
T ss_dssp HHSS-CHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHC
T ss_pred Hhcc-CHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 1111 555666666555544 456778889999999999999999999999999999999753
No 8
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.88 E-value=1.3e-21 Score=193.88 Aligned_cols=236 Identities=32% Similarity=0.496 Sum_probs=186.0
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccC
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTM 367 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (533)
.|++.....+..++..+..+|++|+||||+|||++|+++++.+.+.. ....++.+++++..+.+.+++.+..+......
T Consensus 24 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 102 (323)
T 1sxj_B 24 VGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASDDRGIDVVRNQIKHFAQKKLH 102 (323)
T ss_dssp CSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-HHHHEEEECTTSCCSHHHHHTHHHHHHHBCCC
T ss_pred HCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCCEEEecCccccChHHHHHHHHHHHhcccc
Confidence 46667777777888878878899999999999999999999986643 23457788888766777787777766533222
Q ss_pred C-CCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC----
Q psy4285 368 H-KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD---- 442 (533)
Q Consensus 368 ~-~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~---- 442 (533)
. .++++++||||+|.++...++.|++.+++++.++.+|++||.+..+++++++||..+.|.+++.+++.+++..+
T Consensus 103 ~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~ 182 (323)
T 1sxj_B 103 LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLE 182 (323)
T ss_dssp CCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHc
Confidence 2 23589999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred -------------------HHHHHHHHHH----------------------------------HHHHHHHH---HhcCCC
Q psy4285 443 -------------------DISFFNIIIW----------------------------------YIKIQEIK---IEKGLA 466 (533)
Q Consensus 443 -------------------~~~~~~ll~~----------------------------------~~~l~~l~---~~~~~~ 466 (533)
+..+..+++. ...+..+. ...|.+
T Consensus 183 ~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~dl~~~g~~ 262 (323)
T 1sxj_B 183 DVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKMLLASNLEDSIQILRTDLWKKGYS 262 (323)
T ss_dssp TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSBCHHHHHHHHTSCCHHHHHHHHSCSSHHHHHHHHHHTTTTTTCC
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHcCCC
Confidence 1111111110 01111111 125888
Q ss_pred HHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHh
Q psy4285 467 LTDILTEISLLVHRLE-IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 524 (533)
Q Consensus 467 ~~di~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~~~~~~~~~~ 524 (533)
+.++...+...++... ++......++..+.++++++..|+++.++++.++.+++.+..
T Consensus 263 ~~~i~~~l~~~~~~l~~~~~~~l~~~l~~l~~~~~~l~~~~~~~l~le~l~~~~~~~~~ 321 (323)
T 1sxj_B 263 SIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHKLNN 321 (323)
T ss_dssp HHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhhcc
Confidence 8898888888777654 788888899999999999999999999999999999987654
No 9
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.87 E-value=6.3e-21 Score=189.51 Aligned_cols=233 Identities=16% Similarity=0.189 Sum_probs=168.6
Q ss_pred hhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------------CcceEEecCC--
Q psy4285 288 NESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------------NAMVLELNAS-- 346 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------------~~~~~~~~~~-- 346 (533)
.|+++..+.+...+..++.+| ++|+||||+|||++|+++++.+.|.... ...+..+++.
T Consensus 5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~ 84 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG 84 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT
T ss_pred CchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc
Confidence 466777788888888888888 8999999999999999999999875421 1345666654
Q ss_pred -CCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceee
Q psy4285 347 -DDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRF 425 (533)
Q Consensus 347 -~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i 425 (533)
...+.+.+++.+..+...+ ..++++|+||||+|+|+.+++++|++.+|+++.++.+|++||.+..++++++|||..+
T Consensus 85 ~~~~~i~~ir~l~~~~~~~~--~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~ 162 (334)
T 1a5t_A 85 KNTLGVDAVREVTEKLNEHA--RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLH 162 (334)
T ss_dssp CSSBCHHHHHHHHHHTTSCC--TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred CCCCCHHHHHHHHHHHhhcc--ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceee
Confidence 3456777888776654332 2357899999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCHHHHHHHhhcC----HHHHHHHHHH-----------------------HHHHHHHHH----------hcCCCHH
Q psy4285 426 RFGPLDSSLIMSRLDYD----DISFFNIIIW-----------------------YIKIQEIKI----------EKGLALT 468 (533)
Q Consensus 426 ~~~~~~~~~~~~~l~~~----~~~~~~ll~~-----------------------~~~l~~l~~----------~~~~~~~ 468 (533)
.|.+++.+++.+++.+. ++.+..++.. ...+..+.. ..+.+..
T Consensus 163 ~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 242 (334)
T 1a5t_A 163 YLAPPPEQYAVTWLSREVTMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPSGDWYSLLAALNHEQAP 242 (334)
T ss_dssp ECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHHTTSSHHHHHHHHHHHHHHHHHHHCCCGGGHHHHCSTTHH
T ss_pred eCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHhccchHHHHHHHHHHHHHHHhChHHHHHHHHHhcccHH
Confidence 99999999999988775 2222222211 011111100 0112333
Q ss_pred HHHHHHHHHHHhc------------------------CCChhHHHHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHH
Q psy4285 469 DILTEISLLVHRL------------------------EIPESMLVDLVLKMSDIEYRLA--AGTSEKIQLSALIAAFNSA 522 (533)
Q Consensus 469 di~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~l~--~g~~~~~~l~~~~~~~~~~ 522 (533)
.++..+...++.. .++......+++.+.+.+.++. .++++.+.++.++.++..+
T Consensus 243 ~~l~~l~~~~rdll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~l~~~~~~l~~~~~~n~~l~le~ll~~l~~~ 322 (334)
T 1a5t_A 243 ARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELANHLSPSRLQAILGDVCHIREQLMSVTGINRELLITDLLLRIEHY 322 (334)
T ss_dssp HHHHHHHHHHHHHTCC------CCCTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 3333333221110 1233444567777888888998 8999999999999999864
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.85 E-value=3.1e-21 Score=208.22 Aligned_cols=150 Identities=21% Similarity=0.264 Sum_probs=95.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCC------CCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD------DRGIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
++|||||||||||++|+++|.++ +.+++.+++++ +.+...+++.+..... ..++||||||+|
T Consensus 513 gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~------~~P~IifiDEiD 580 (806)
T 3cf2_A 513 GVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMWFGESEANVREIFDKARQ------AAPCVLFFDELD 580 (806)
T ss_dssp CCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHT------TCSEEEECSCGG
T ss_pred eEEEecCCCCCchHHHHHHHHHh------CCceEEeccchhhccccchHHHHHHHHHHHHHH------cCCceeechhhh
Confidence 49999999999999999999998 67777776543 3445566666554332 356899999999
Q ss_pred CCCHH--------------HHHHHHHHHHhc--CCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcC
Q psy4285 382 AMTND--------------AQNALRRIIEKF--TTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 382 ~l~~~--------------~~~~Ll~~le~~--~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~ 442 (533)
.+... ..+.|+..|+.. ..++.+|.+||+++.+|+++++ ||. .+.++.|+.++..++++..
T Consensus 581 sl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~ 660 (806)
T 3cf2_A 581 SIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660 (806)
T ss_dssp GCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTT
T ss_pred HHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHH
Confidence 98532 246688888843 4567788899999999999999 995 6777777777777777665
Q ss_pred --------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy4285 443 --------DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLV 478 (533)
Q Consensus 443 --------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~ 478 (533)
..++..+.+ .+.|||+.||..-+.++.
T Consensus 661 l~~~~~~~~~dl~~la~---------~t~g~SGadi~~l~~~A~ 695 (806)
T 3cf2_A 661 LRKSPVAKDVDLEFLAK---------MTNGFSGADLTEICQRAC 695 (806)
T ss_dssp SSCC--CCC-------------------------CHHHHHHHHH
T ss_pred hcCCCCCCCCCHHHHHH---------hCCCCCHHHHHHHHHHHH
Confidence 234444444 677999999877665543
No 11
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.4e-18 Score=172.47 Aligned_cols=189 Identities=21% Similarity=0.310 Sum_probs=129.5
Q ss_pred CccccccccCCCC--HHHHHHHHHHHhhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcce
Q psy4285 263 NEDTVYNSVGYPT--KTEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMV 340 (533)
Q Consensus 263 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~ 340 (533)
.++..|.++++.. ...+.+.+.+... +.+....+. ...+.++|||||||||||++|+++|.++ +.++
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~-~pe~f~~~g----i~~prGvLL~GPPGTGKTllAkAiA~e~------~~~f 210 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVK-HPELFESLG----IAQPKGVILYGPPGTGKTLLARAVAHHT------DCKF 210 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHH-CHHHHHHHT----CCCCCCEEEESCSSSSHHHHHHHHHHHH------TCEE
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHh-CHHHHHhCC----CCCCCceEEeCCCCCCHHHHHHHHHHhh------CCCc
Confidence 3556788888753 2344554444332 222222211 1122359999999999999999999998 7788
Q ss_pred EEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHh--c
Q psy4285 341 LELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN--------------DAQNALRRIIEK--F 398 (533)
Q Consensus 341 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--------------~~~~~Ll~~le~--~ 398 (533)
+.+++++.. +...++..+..... ..++||||||+|.+.. ...+.|+..|+. .
T Consensus 211 ~~v~~s~l~sk~vGese~~vr~lF~~Ar~------~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 211 IRVSGAELVQKYIGEGSRMVRELFVMARE------HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp EEEEGGGGSCSSTTHHHHHHHHHHHHHHH------TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred eEEEhHHhhccccchHHHHHHHHHHHHHH------hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 888877643 23445554433322 3568999999999853 124557777774 3
Q ss_pred CCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcC--------HHHHHHHHHHHHHHHHHHHhcCCCH
Q psy4285 399 TTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYD--------DISFFNIIIWYIKIQEIKIEKGLAL 467 (533)
Q Consensus 399 ~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~--------~~~~~~ll~~~~~l~~l~~~~~~~~ 467 (533)
..++.+|++||+++.+||++++ ||+ .+.|+.|+.++..+++... ..++..+.+ .+.|+++
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~---------~t~G~SG 355 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAE---------KMNGCSG 355 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHH---------HCCSCCH
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHH---------HCCCCCH
Confidence 4578899999999999999998 995 8888889988888887654 123444444 7789999
Q ss_pred HHHHHHHHHH
Q psy4285 468 TDILTEISLL 477 (533)
Q Consensus 468 ~di~~~~~~~ 477 (533)
.||..-+.++
T Consensus 356 ADi~~l~~eA 365 (405)
T 4b4t_J 356 ADVKGVCTEA 365 (405)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9987766554
No 12
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.77 E-value=3.6e-17 Score=165.26 Aligned_cols=153 Identities=22% Similarity=0.340 Sum_probs=120.3
Q ss_pred hhchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------------CcceEEecCCCC
Q psy4285 288 NESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------------NAMVLELNASDD 348 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------------~~~~~~~~~~~~ 348 (533)
.|++.....+..++..+..+| ++|+||||||||++++++++.+.+.... ...++.+++...
T Consensus 19 vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (373)
T 1jr3_A 19 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR 98 (373)
T ss_dssp CSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCS
T ss_pred cCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEeccccc
Confidence 455666666777777777777 7999999999999999999998764311 012355555443
Q ss_pred CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeec
Q psy4285 349 RGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFG 428 (533)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~ 428 (533)
.+.+.+++.+....... ..+++.|+||||+|.++...++.|++.+++++.++.+|++|+....+.+++++||..+.|.
T Consensus 99 ~~~~~~~~l~~~~~~~~--~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~ 176 (373)
T 1jr3_A 99 TKVEDTRDLLDNVQYAP--ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 176 (373)
T ss_dssp CCSSCHHHHHHHTTSCC--SSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred CCHHHHHHHHHHHhhcc--ccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCC
Confidence 44556666655543222 1356789999999999999999999999999899999999999999999999999999999
Q ss_pred CCCHHHHHHHhhcC
Q psy4285 429 PLDSSLIMSRLDYD 442 (533)
Q Consensus 429 ~~~~~~~~~~l~~~ 442 (533)
+++.+++.+++.++
T Consensus 177 ~l~~~~~~~~l~~~ 190 (373)
T 1jr3_A 177 ALDVEQIRHQLEHI 190 (373)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998754
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.77 E-value=1.9e-17 Score=154.30 Aligned_cols=153 Identities=44% Similarity=0.769 Sum_probs=124.0
Q ss_pred hchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCC
Q psy4285 289 ESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH 368 (533)
Q Consensus 289 ~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (533)
|++.....+..++..+..++++|+||||||||++++.+++.+.+.. ....++.++++...+...+...+..+.......
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (226)
T 2chg_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERGIDVVRHKIKEFARTAPIG 99 (226)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-GGGGEEEEETTCTTCHHHHHHHHHHHHTSCCST
T ss_pred CcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccc-cccceEEeccccccChHHHHHHHHHHhcccCCC
Confidence 4455556666666666666799999999999999999999875543 345677888877667666766666665443322
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 369 KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 369 ~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
...+.+|+|||++.+....++.|++.+++++.++.+|++||.+..+++++.+||..+.|.+++.+++.+++.+.
T Consensus 100 ~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~ 173 (226)
T 2chg_A 100 GAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEI 173 (226)
T ss_dssp TCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred ccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHH
Confidence 35688999999999999999999999999888899999999999999999999999999999999988887754
No 14
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=8.2e-18 Score=167.35 Aligned_cols=189 Identities=20% Similarity=0.259 Sum_probs=127.0
Q ss_pred CccccccccCCCC--HHHHHHHHHHHhhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcce
Q psy4285 263 NEDTVYNSVGYPT--KTEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMV 340 (533)
Q Consensus 263 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~ 340 (533)
.+...|.+++... ...+.+.+.+.... .+....+. ...+..+|||||||||||++|+++|.++ +.++
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~-pe~f~~~G----i~~prGvLLyGPPGTGKTlLAkAiA~e~------~~~f 244 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTH-PELYEEMG----IKPPKGVILYGAPGTGKTLLAKAVANQT------SATF 244 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHC-CHHHHHHT----CCCCSEEEEESSTTTTHHHHHHHHHHHH------TCEE
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhC-HHHHHhCC----CCCCCCCceECCCCchHHHHHHHHHHHh------CCCE
Confidence 4555788887753 23455544443322 22222111 1122349999999999999999999998 7788
Q ss_pred EEecCCCCCc------hhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHh--c
Q psy4285 341 LELNASDDRG------IGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN--------------DAQNALRRIIEK--F 398 (533)
Q Consensus 341 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--------------~~~~~Ll~~le~--~ 398 (533)
+.+++++..+ ...++..+..... ..++||||||+|.+.. ...+.|+..++. .
T Consensus 245 i~v~~s~l~sk~vGesek~ir~lF~~Ar~------~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 245 LRIVGSELIQKYLGDGPRLCRQIFKVAGE------NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp EEEESGGGCCSSSSHHHHHHHHHHHHHHH------TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred EEEEHHHhhhccCchHHHHHHHHHHHHHh------cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 8888766432 3344444433322 3568999999998842 123456666664 3
Q ss_pred CCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcC--------HHHHHHHHHHHHHHHHHHHhcCCCH
Q psy4285 399 TTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYD--------DISFFNIIIWYIKIQEIKIEKGLAL 467 (533)
Q Consensus 399 ~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~--------~~~~~~ll~~~~~l~~l~~~~~~~~ 467 (533)
..++.+|+|||+++.+||++++ ||+ .+.|+.|+.++..+++... ..++..+.. .+.|+|+
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~---------~T~GfSG 389 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVT---------TKDDLSG 389 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHH---------HCCSCCH
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHH---------hCCCCCH
Confidence 4568899999999999999998 995 7888888888888887654 123444444 6789999
Q ss_pred HHHHHHHHHH
Q psy4285 468 TDILTEISLL 477 (533)
Q Consensus 468 ~di~~~~~~~ 477 (533)
.||..-+.++
T Consensus 390 ADI~~l~~eA 399 (437)
T 4b4t_I 390 ADIQAMCTEA 399 (437)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9987666554
No 15
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.75 E-value=1.1e-17 Score=184.26 Aligned_cols=127 Identities=19% Similarity=0.298 Sum_probs=94.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHH-HHHHHHHHhcccCCCCCcEEEEEeCCCCCCHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIV-RDQIFQFASTKTMHKSSYKLIILDEADAMTND 386 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~ 386 (533)
+++|+||||||||++|+++++.+.+. +.+++.+++++....... ...+...... .+++||||||++.+.++
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~---~~~~i~i~~s~~~~~~~~~~~~l~~~~~~-----~~~~vl~lDEi~~~~~~ 594 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGD---EESMIRIDMSEYMEKHSTSGGQLTEKVRR-----KPYSVVLLDAIEKAHPD 594 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSC---TTCEEEEEGGGGCSSCCCC---CHHHHHH-----CSSSEEEEECGGGSCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC---CcceEEEechhcccccccccchhhHHHHh-----CCCeEEEEeCccccCHH
Confidence 59999999999999999999998554 456777777654321110 1111111111 24579999999999999
Q ss_pred HHHHHHHHHHh-----------cCCCcEEEEEeCCCCC------------CChhhhccc-eeeeecCCCHHHHHHHhhcC
Q psy4285 387 AQNALRRIIEK-----------FTTNVRFCIICNYLSK------------IPPAIQSRC-TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 387 ~~~~Ll~~le~-----------~~~~~~~I~~~n~~~~------------l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~ 442 (533)
.++.|++.|++ ...++++|+|||.... +.|++++|| ..+.|+|++.+++..++...
T Consensus 595 ~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 595 VFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp HHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred HHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 99999999997 3457899999997554 789999999 79999999998888887765
No 16
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2e-17 Score=167.07 Aligned_cols=189 Identities=19% Similarity=0.271 Sum_probs=125.9
Q ss_pred CccccccccCCCC--HHHHHHHHHHHhhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcce
Q psy4285 263 NEDTVYNSVGYPT--KTEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMV 340 (533)
Q Consensus 263 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~ 340 (533)
.++..|.++++.. ...+.+.+.+... +.+....+. ...+.++|||||||||||++|+++|.++ +.++
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~-~p~~f~~~g----~~~prGvLL~GPPGtGKTllAkAiA~e~------~~~~ 243 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLK-NPEIFQRVG----IKPPKGVLLYGPPGTGKTLLAKAVAATI------GANF 243 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHH-CHHHHHHHC----CCCCCEEEEESCTTSSHHHHHHHHHHHH------TCEE
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHh-CHHHHHhCC----CCCCCeEEEECCCCCcHHHHHHHHHHHh------CCCE
Confidence 3445677777753 2344554444332 222222221 1122349999999999999999999998 7788
Q ss_pred EEecCCCCCc------hhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhc--
Q psy4285 341 LELNASDDRG------IGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN--------------DAQNALRRIIEKF-- 398 (533)
Q Consensus 341 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--------------~~~~~Ll~~le~~-- 398 (533)
+.+++++..+ ...++..+..... ..++||||||+|.+.. ...+.|+..|+..
T Consensus 244 ~~v~~s~l~sk~~Gese~~ir~~F~~A~~------~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 244 IFSPASGIVDKYIGESARIIREMFAYAKE------HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp EEEEGGGTCCSSSSHHHHHHHHHHHHHHH------SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred EEEehhhhccccchHHHHHHHHHHHHHHh------cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 8888766432 2334443332221 3578999999998842 1245677777753
Q ss_pred CCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcC--------HHHHHHHHHHHHHHHHHHHhcCCCH
Q psy4285 399 TTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYD--------DISFFNIIIWYIKIQEIKIEKGLAL 467 (533)
Q Consensus 399 ~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~--------~~~~~~ll~~~~~l~~l~~~~~~~~ 467 (533)
..++.+|+|||+++.+||++++ ||+ .+.|+.|+.++..+++... ..++..+.. .+.|+++
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~---------~t~G~sG 388 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVK---------MSDGFNG 388 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHH---------TCCSCCH
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHH---------hCCCCCH
Confidence 3568899999999999999998 474 7888888888888877654 123444433 6789999
Q ss_pred HHHHHHHHHH
Q psy4285 468 TDILTEISLL 477 (533)
Q Consensus 468 ~di~~~~~~~ 477 (533)
.||..-+.++
T Consensus 389 ADi~~l~~eA 398 (437)
T 4b4t_L 389 ADIRNCATEA 398 (437)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9987766554
No 17
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=9.7e-18 Score=169.22 Aligned_cols=189 Identities=23% Similarity=0.311 Sum_probs=124.3
Q ss_pred CccccccccCCCCH--HHHHHHHHHHhhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcce
Q psy4285 263 NEDTVYNSVGYPTK--TEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMV 340 (533)
Q Consensus 263 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~ 340 (533)
.+...|.++++... ..+.+.+.+.... .+....+. ...+.++|||||||||||++|+++|.++ +.++
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~-pe~f~~~g----~~~prGvLLyGPPGTGKTllAkAiA~e~------~~~f 243 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKR-ADKFKDMG----IRAPKGALMYGPPGTGKTLLARACAAQT------NATF 243 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHC-SHHHHHHC----CCCCCEEEEESCTTSSHHHHHHHHHHHH------TCEE
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhC-HHHHHhCC----CCCCCeeEEECcCCCCHHHHHHHHHHHh------CCCE
Confidence 34557888877642 2344433333322 22221111 1122349999999999999999999998 7788
Q ss_pred EEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCH-----------H---HHHHHHHHHHhc--
Q psy4285 341 LELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN-----------D---AQNALRRIIEKF-- 398 (533)
Q Consensus 341 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~---~~~~Ll~~le~~-- 398 (533)
+.+++++.. +...++..+..... ..++||||||+|.+.. . ..+.|+..|+..
T Consensus 244 ~~v~~s~l~~~~vGese~~ir~lF~~A~~------~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 244 LKLAAPQLVQMYIGEGAKLVRDAFALAKE------KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp EEEEGGGGCSSCSSHHHHHHHHHHHHHHH------HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred EEEehhhhhhcccchHHHHHHHHHHHHHh------cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 888876542 23344444433322 2468999999998721 1 234566777643
Q ss_pred CCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcC--------HHHHHHHHHHHHHHHHHHHhcCCCH
Q psy4285 399 TTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYD--------DISFFNIIIWYIKIQEIKIEKGLAL 467 (533)
Q Consensus 399 ~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~--------~~~~~~ll~~~~~l~~l~~~~~~~~ 467 (533)
..++.+|+|||+++.+||++++ ||+ .+.|+.|+.++..+++... .-++..+.. .+.|+++
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~---------~t~G~sG 388 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELAR---------STDEFNG 388 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHH---------HCSSCCH
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHH---------hCCCCCH
Confidence 3567899999999999999988 995 7888888888888887654 112333333 6789999
Q ss_pred HHHHHHHHHH
Q psy4285 468 TDILTEISLL 477 (533)
Q Consensus 468 ~di~~~~~~~ 477 (533)
.||..-+.++
T Consensus 389 ADi~~l~~eA 398 (434)
T 4b4t_M 389 AQLKAVTVEA 398 (434)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9987666544
No 18
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.74 E-value=3.6e-17 Score=180.44 Aligned_cols=144 Identities=22% Similarity=0.252 Sum_probs=102.9
Q ss_pred hhhchhhhhhhccccccc--------CC-CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCch------
Q psy4285 287 LNESMDLCYKINRFIDEN--------EL-PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI------ 351 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~--------~~-~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~------ 351 (533)
..|++..+..+...+... ++ .+++|+||||||||++|+++++.+ +..++.+++++....
T Consensus 460 v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l------~~~~~~i~~s~~~~~~~~~~l 533 (758)
T 1r6b_X 460 VFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL------GIELLRFDMSEYMERHTVSRL 533 (758)
T ss_dssp SCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH------TCEEEEEEGGGCSSSSCCSSS
T ss_pred ccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh------cCCEEEEechhhcchhhHhhh
Confidence 456776666555544322 11 259999999999999999999988 445566655432110
Q ss_pred -----hHH-----HHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CCcEEEEEeCC
Q psy4285 352 -----GIV-----RDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFT-----------TNVRFCIICNY 410 (533)
Q Consensus 352 -----~~~-----~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~n~ 410 (533)
..+ ......+. ..+++||+|||++++.++.++.|++.|++.. .++.+|+|||.
T Consensus 534 ~g~~~g~~g~~~~~~l~~~~~------~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~ 607 (758)
T 1r6b_X 534 IGAPPGYVGFDQGGLLTDAVI------KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_dssp CCCCSCSHHHHHTTHHHHHHH------HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECS
T ss_pred cCCCCCCcCccccchHHHHHH------hCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCc
Confidence 011 01111111 1356899999999999999999999999642 46789999997
Q ss_pred CC-------------------------CCChhhhccc-eeeeecCCCHHHHHHHhhcC
Q psy4285 411 LS-------------------------KIPPAIQSRC-TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 411 ~~-------------------------~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~ 442 (533)
.. .+.|++++|| ..+.|++++.+++..++...
T Consensus 608 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~ 665 (758)
T 1r6b_X 608 GVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKF 665 (758)
T ss_dssp SCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred chhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHH
Confidence 43 5789999999 68999999998888887765
No 19
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=3e-17 Score=165.00 Aligned_cols=189 Identities=21% Similarity=0.261 Sum_probs=125.0
Q ss_pred CccccccccCCCCH--HHHHHHHHHHhhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcce
Q psy4285 263 NEDTVYNSVGYPTK--TEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMV 340 (533)
Q Consensus 263 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~ 340 (533)
.++..|.++++... ..+.+.+.+.+. +.+....+. -..+..+|||||||||||++|+++|.++ +.++
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~-~pe~f~~~G----i~pprGILLyGPPGTGKTlLAkAiA~e~------~~~f 271 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLL-SPERFATLG----IDPPKGILLYGPPGTGKTLCARAVANRT------DATF 271 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHH-CHHHHHHHT----CCCCSEEEECSCTTSSHHHHHHHHHHHH------TCEE
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhc-CHHHHHHCC----CCCCCceEeeCCCCCcHHHHHHHHHhcc------CCCe
Confidence 44556777777532 234444333222 222222211 1122349999999999999999999998 7788
Q ss_pred EEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhc--
Q psy4285 341 LELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN--------------DAQNALRRIIEKF-- 398 (533)
Q Consensus 341 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--------------~~~~~Ll~~le~~-- 398 (533)
+.+++++.. +...++..+..... ..++||||||+|.+.. ...+.++..|+..
T Consensus 272 i~vs~s~L~sk~vGesek~ir~lF~~Ar~------~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 272 IRVIGSELVQKYVGEGARMVRELFEMART------KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp EEEEGGGGCCCSSSHHHHHHHHHHHHHHH------TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred EEEEhHHhhcccCCHHHHHHHHHHHHHHh------cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 888876543 23345544433322 3568999999998842 1234556666633
Q ss_pred CCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcC--------HHHHHHHHHHHHHHHHHHHhcCCCH
Q psy4285 399 TTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYD--------DISFFNIIIWYIKIQEIKIEKGLAL 467 (533)
Q Consensus 399 ~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~--------~~~~~~ll~~~~~l~~l~~~~~~~~ 467 (533)
..++.+|+|||+++.+|+++++ ||+ .+.|+.|+.++..+++... ..++..+.+ .+.|+++
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~---------~T~GfSG 416 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISR---------LCPNSTG 416 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHH---------HCCSCCH
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHH---------HCCCCCH
Confidence 4567899999999999999998 994 7888888888888887644 123344333 6789999
Q ss_pred HHHHHHHHHH
Q psy4285 468 TDILTEISLL 477 (533)
Q Consensus 468 ~di~~~~~~~ 477 (533)
.||..-+.++
T Consensus 417 ADI~~l~~eA 426 (467)
T 4b4t_H 417 AELRSVCTEA 426 (467)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9987766554
No 20
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.8e-17 Score=164.79 Aligned_cols=189 Identities=26% Similarity=0.325 Sum_probs=125.2
Q ss_pred CccccccccCCCC--HHHHHHHHHHHhhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcce
Q psy4285 263 NEDTVYNSVGYPT--KTEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMV 340 (533)
Q Consensus 263 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~ 340 (533)
.++..|.++++.. ...+.+.+.+... +.+....+. ...+..+|||||||||||++|+++|+++ +.++
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~-~p~~~~~~g----~~~prGiLL~GPPGtGKT~lakAiA~~~------~~~~ 234 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLV-QADLYEQIG----IDPPRGVLLYGPPGTGKTMLVKAVANST------KAAF 234 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHH-CHHHHHHHC----CCCCCEEEEESCTTTTHHHHHHHHHHHH------TCEE
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHh-CHHHHHhCC----CCCCceEEEECCCCCCHHHHHHHHHHHh------CCCe
Confidence 3455788887754 2334444444332 222222221 1122249999999999999999999998 7788
Q ss_pred EEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhc--
Q psy4285 341 LELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN--------------DAQNALRRIIEKF-- 398 (533)
Q Consensus 341 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~--------------~~~~~Ll~~le~~-- 398 (533)
+.+++++.. +...++..+..... ..++|+||||+|.+.. ...+.|+..|+..
T Consensus 235 ~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~------~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 235 IRVNGSEFVHKYLGEGPRMVRDVFRLARE------NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp EEEEGGGTCCSSCSHHHHHHHHHHHHHHH------TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred EEEecchhhccccchhHHHHHHHHHHHHH------cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 888876543 23345554433322 3568999999987621 2356677788753
Q ss_pred CCCcEEEEEeCCCCCCChhhhc--cce-eeeec-CCCHHHHHHHhhcC--------HHHHHHHHHHHHHHHHHHHhcCCC
Q psy4285 399 TTNVRFCIICNYLSKIPPAIQS--RCT-RFRFG-PLDSSLIMSRLDYD--------DISFFNIIIWYIKIQEIKIEKGLA 466 (533)
Q Consensus 399 ~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~-~~~~~~~~~~l~~~--------~~~~~~ll~~~~~l~~l~~~~~~~ 466 (533)
..++.+|+|||+++.+||++++ ||+ .+.|+ .|+.++...++... ..++..+.. .+.|++
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~---------~t~G~s 379 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLII---------RNDSLS 379 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHH---------HTTTCC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHH---------HCCCCC
Confidence 4568899999999999999998 885 67785 56777766666544 123444444 678999
Q ss_pred HHHHHHHHHHH
Q psy4285 467 LTDILTEISLL 477 (533)
Q Consensus 467 ~~di~~~~~~~ 477 (533)
+.||..-+.++
T Consensus 380 gadi~~l~~eA 390 (428)
T 4b4t_K 380 GAVIAAIMQEA 390 (428)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99987766554
No 21
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.73 E-value=5.1e-17 Score=166.61 Aligned_cols=144 Identities=25% Similarity=0.331 Sum_probs=108.0
Q ss_pred hhchhhh---hhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhc
Q psy4285 288 NESMDLC---YKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364 (533)
Q Consensus 288 ~~~~~~~---~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (533)
.|++++. ..+...+..+..++++|+||||||||++|+++++.+ +..+..+++.. .+...+++.+......
T Consensus 29 vGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~------~~~f~~l~a~~-~~~~~ir~~~~~a~~~ 101 (447)
T 3pvs_A 29 IGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA------NADVERISAVT-SGVKEIREAIERARQN 101 (447)
T ss_dssp CSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT------TCEEEEEETTT-CCHHHHHHHHHHHHHH
T ss_pred CCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh------CCCeEEEEecc-CCHHHHHHHHHHHHHh
Confidence 4555555 567777777777789999999999999999999987 55677777655 4555566655543322
Q ss_pred ccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEe--CCCCCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 365 KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC--NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 365 ~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~--n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
.. .....+|||||+|.++...++.|++.+++ ..+.+|++| |....++++++|||..+.|.+++.+++..++.+.
T Consensus 102 ~~--~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~ 177 (447)
T 3pvs_A 102 RN--AGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQA 177 (447)
T ss_dssp HH--TTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHH
T ss_pred hh--cCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHH
Confidence 21 24678999999999999999999999997 447788777 5556899999999999999999999999888654
No 22
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.69 E-value=5.2e-16 Score=152.95 Aligned_cols=151 Identities=18% Similarity=0.215 Sum_probs=110.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
+++|+||||||||++|+++|+++. +..++.+++++.. ....++..+..... ..++||||||+|
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~~-----~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~------~~~~vl~iDEid 115 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEAN-----NSTFFSISSSDLVSKWLGESEKLVKNLFQLARE------NKPSIIFIDEID 115 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTT-----SCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHH------TSSEEEEEETTT
T ss_pred eEEEECCCCccHHHHHHHHHHHcC-----CCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHh------cCCcEEEeecHH
Confidence 599999999999999999999872 3456666665432 23344444333221 356899999999
Q ss_pred CCC-----------HHHHHHHHHHHHh---cCCCcEEEEEeCCCCCCChhhhccc-eeeeecCCCHHHHHHHhhcC----
Q psy4285 382 AMT-----------NDAQNALRRIIEK---FTTNVRFCIICNYLSKIPPAIQSRC-TRFRFGPLDSSLIMSRLDYD---- 442 (533)
Q Consensus 382 ~l~-----------~~~~~~Ll~~le~---~~~~~~~I~~~n~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~---- 442 (533)
.+. ....+.|+..++. ...++.+|++||.+..++++++||| ..+.++.|+.++..+++...
T Consensus 116 ~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~ 195 (322)
T 1xwi_A 116 SLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTT 195 (322)
T ss_dssp GGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTC
T ss_pred HhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcC
Confidence 983 2345678888875 3467889999999999999999999 57888889988888888764
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy4285 443 -----DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLV 478 (533)
Q Consensus 443 -----~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~ 478 (533)
+.++..+.. .+.|+++.|+..-+.+++
T Consensus 196 ~~~l~~~~l~~la~---------~t~G~sgadl~~l~~~A~ 227 (322)
T 1xwi_A 196 QNSLTEADFRELGR---------KTDGYSGADISIIVRDAL 227 (322)
T ss_dssp CBCCCHHHHHHHHH---------TCTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH---------HcCCCCHHHHHHHHHHHH
Confidence 334444444 678999999877665554
No 23
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.69 E-value=3.4e-16 Score=156.46 Aligned_cols=150 Identities=21% Similarity=0.266 Sum_probs=109.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC------CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD------RGIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
++||+||||||||++|+++|+.+ +..++.+++++. .....++..+..... ..++||||||+|
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~------~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~------~~~~vl~iDEid 153 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE------NKPSIIFIDQVD 153 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH------TCEEEEEEHHHHHSCC---CHHHHHHHHHHHHH------TSSEEEEEECGG
T ss_pred eEEEECCCCCcHHHHHHHHHHHh------CCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHH------cCCeEEEEechH
Confidence 59999999999999999999998 556666665431 122333333322211 356899999999
Q ss_pred CCCH-----------HHHHHHHHHHHh---cCCCcEEEEEeCCCCCCChhhhccc-eeeeecCCCHHHHHHHhhcC----
Q psy4285 382 AMTN-----------DAQNALRRIIEK---FTTNVRFCIICNYLSKIPPAIQSRC-TRFRFGPLDSSLIMSRLDYD---- 442 (533)
Q Consensus 382 ~l~~-----------~~~~~Ll~~le~---~~~~~~~I~~~n~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~---- 442 (533)
.+.. ..++.|+..|+. ...++.+|++||.+..+++++++|| ..+.+.+|+.++...++...
T Consensus 154 ~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~ 233 (355)
T 2qp9_X 154 ALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDT 233 (355)
T ss_dssp GGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTS
T ss_pred hhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhC
Confidence 9863 246778888874 3467889999999999999999999 57888889999888888764
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy4285 443 -----DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLV 478 (533)
Q Consensus 443 -----~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~ 478 (533)
+.++..+.. .+.|+++.|+..-+.+++
T Consensus 234 ~~~~~~~~l~~la~---------~t~G~sg~dl~~l~~~A~ 265 (355)
T 2qp9_X 234 PSVLTKEDYRTLGA---------MTEGYSGSDIAVVVKDAL 265 (355)
T ss_dssp CBCCCHHHHHHHHH---------HTTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH---------HcCCCCHHHHHHHHHHHH
Confidence 334444444 677999999877665544
No 24
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.69 E-value=2.5e-16 Score=175.26 Aligned_cols=151 Identities=20% Similarity=0.294 Sum_probs=104.4
Q ss_pred hhhchhhhhhhcccccccC--------C-CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHH
Q psy4285 287 LNESMDLCYKINRFIDENE--------L-PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQ 357 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~--------~-~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (533)
+.|++..+..+...+.... + .+++|+||||||||++|+++++.+.+. +..++.++++...........
T Consensus 560 viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~---~~~~i~i~~~~~~~~~~~s~l 636 (854)
T 1qvr_A 560 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRIDMTEYMEKHAVSRL 636 (854)
T ss_dssp SCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS---GGGEEEECTTTCCSSGGGGGC
T ss_pred cCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC---CCcEEEEechhccchhHHHHH
Confidence 4566666666555544321 1 258999999999999999999998664 356777777654322111110
Q ss_pred H------------HHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CCcEEEEEeCC----
Q psy4285 358 I------------FQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFT-----------TNVRFCIICNY---- 410 (533)
Q Consensus 358 ~------------~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~n~---- 410 (533)
+ +.+.... ....+++|||||++.+..+.++.|++.|+++. .++.+|+|||.
T Consensus 637 ~g~~~~~~G~~~~g~l~~~~--~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~ 714 (854)
T 1qvr_A 637 IGAPPGYVGYEEGGQLTEAV--RRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPL 714 (854)
T ss_dssp --------------CHHHHH--HHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHH
T ss_pred cCCCCCCcCccccchHHHHH--HhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHH
Confidence 0 0000000 01246899999999999999999999998652 36779999996
Q ss_pred ----------------------CCCCChhhhccc-eeeeecCCCHHHHHHHhhcC
Q psy4285 411 ----------------------LSKIPPAIQSRC-TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 411 ----------------------~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~ 442 (533)
...+.|++.+|| ..+.|.|++.+++..++...
T Consensus 715 ~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~ 769 (854)
T 1qvr_A 715 ILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQ 769 (854)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHH
T ss_pred HhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHH
Confidence 235789999999 68888999988877776654
No 25
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.68 E-value=1.9e-16 Score=156.49 Aligned_cols=150 Identities=21% Similarity=0.257 Sum_probs=109.6
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
.++||+||||||||++|+++|+.+ +..++.+++++.. ....++..+..... ..++||||||+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~------~~~~vl~iDEi 119 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE------NKPSIIFIDQV 119 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH------TCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHH------TSSEEEEEECG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH------CCCEEEEchHHHhhcccchHHHHHHHHHHHHHh------cCCeEEEechh
Confidence 359999999999999999999997 5667777764421 12223333222221 35689999999
Q ss_pred CCCCH-----------HHHHHHHHHHHh---cCCCcEEEEEeCCCCCCChhhhccc-eeeeecCCCHHHHHHHhhcC---
Q psy4285 381 DAMTN-----------DAQNALRRIIEK---FTTNVRFCIICNYLSKIPPAIQSRC-TRFRFGPLDSSLIMSRLDYD--- 442 (533)
Q Consensus 381 d~l~~-----------~~~~~Ll~~le~---~~~~~~~I~~~n~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~--- 442 (533)
|.+.. ..++.|+..++. ...++.+|++||.+..++++++||| ..+.+..|+.++..+++...
T Consensus 120 d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 199 (322)
T 3eie_A 120 DALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD 199 (322)
T ss_dssp GGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred hhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhcc
Confidence 98854 346778888874 3567888999999999999999999 57888999999998888765
Q ss_pred ------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy4285 443 ------DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLL 477 (533)
Q Consensus 443 ------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~ 477 (533)
+.++..+.. .+.|+++.|+..-+..+
T Consensus 200 ~~~~~~~~~l~~la~---------~t~g~sg~di~~l~~~a 231 (322)
T 3eie_A 200 TPCVLTKEDYRTLGA---------MTEGYSGSDIAVVVKDA 231 (322)
T ss_dssp CCCCCCHHHHHHHHH---------TTTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH---------HcCCCCHHHHHHHHHHH
Confidence 334444444 66799999887555443
No 26
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.67 E-value=1.1e-15 Score=144.34 Aligned_cols=152 Identities=22% Similarity=0.347 Sum_probs=110.6
Q ss_pred hchhhhhhhcccccccCCCc-eeEeCCCCCChHHHHHHHHHHHcccccc------------------CcceEEecCCCCC
Q psy4285 289 ESMDLCYKINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQF------------------NAMVLELNASDDR 349 (533)
Q Consensus 289 ~~~~~~~~l~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------------~~~~~~~~~~~~~ 349 (533)
|++.....+..++..+..++ ++|+||||||||++++.+++.+.+.... ...++.++.....
T Consensus 27 g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (250)
T 1njg_A 27 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRT 106 (250)
T ss_dssp SCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGG
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccc
Confidence 44555555656666555555 8999999999999999999987543210 0122334433323
Q ss_pred chhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecC
Q psy4285 350 GIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGP 429 (533)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~ 429 (533)
....++..+....... ...++.+|||||+|.++...++.|++.+++.+.++.+|++||....+++++.+|+..+.+.+
T Consensus 107 ~~~~~~~~~~~~~~~~--~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~ 184 (250)
T 1njg_A 107 KVEDTRDLLDNVQYAP--ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 184 (250)
T ss_dssp GHHHHHHHHHSCCCSC--SSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred cHHHHHHHHHHhhhch--hcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCC
Confidence 3333444333221111 12457899999999999999999999999888889999999999999999999999999999
Q ss_pred CCHHHHHHHhhcC
Q psy4285 430 LDSSLIMSRLDYD 442 (533)
Q Consensus 430 ~~~~~~~~~l~~~ 442 (533)
++.+++.+++.+.
T Consensus 185 l~~~e~~~~l~~~ 197 (250)
T 1njg_A 185 LDVEQIRHQLEHI 197 (250)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999998888754
No 27
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.65 E-value=1.6e-15 Score=156.14 Aligned_cols=152 Identities=18% Similarity=0.212 Sum_probs=109.6
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCc------hhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG------IGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
.++||+||||||||++|+++|+.+. +..++.+++++..+ ...++..+..... ..++||||||+
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~~-----~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~------~~~~vl~iDEi 236 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEAN-----NSTFFSISSSDLVSKWLGESEKLVKNLFQLARE------NKPSIIFIDEI 236 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHCC-----SSEEEEECCC---------CCCTHHHHHHHHHH------SCSEEEEESCT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC-----CCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHH------cCCeEEEEech
Confidence 3599999999999999999999872 34566777655321 2234444333221 35689999999
Q ss_pred CCCC-----------HHHHHHHHHHHHh---cCCCcEEEEEeCCCCCCChhhhccce-eeeecCCCHHHHHHHhhcC---
Q psy4285 381 DAMT-----------NDAQNALRRIIEK---FTTNVRFCIICNYLSKIPPAIQSRCT-RFRFGPLDSSLIMSRLDYD--- 442 (533)
Q Consensus 381 d~l~-----------~~~~~~Ll~~le~---~~~~~~~I~~~n~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~--- 442 (533)
|.+. ....+.|+..++. .+.++.||++||.+..++++++|||. .+.++.|+.++...++...
T Consensus 237 d~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~ 316 (444)
T 2zan_A 237 DSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS 316 (444)
T ss_dssp TTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred HhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhc
Confidence 9983 2456777777765 35678999999999999999999995 7888888888888877664
Q ss_pred ------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy4285 443 ------DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLV 478 (533)
Q Consensus 443 ------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~ 478 (533)
+.++..+.. .+.|+++.|+..-+..++
T Consensus 317 ~~~~l~~~~l~~la~---------~t~G~sgadl~~l~~~a~ 349 (444)
T 2zan_A 317 TQNSLTEADFQELGR---------KTDGYSGADISIIVRDAL 349 (444)
T ss_dssp SCEECCHHHHHHHHH---------HTTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH---------HcCCCCHHHHHHHHHHHH
Confidence 334444444 678999999877666554
No 28
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.64 E-value=1.1e-15 Score=148.49 Aligned_cols=150 Identities=23% Similarity=0.305 Sum_probs=105.4
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCc------hhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG------IGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
.+++|+||||||||++|+++++.+ +..++.+++++..+ ...++..+..... ..++||||||+
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~vl~iDEi 119 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET------NATFIRVVGSELVKKFIGEGASLVKDIFKLAKE------KAPSIIFIDEI 119 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT------TCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHH------TCSEEEEEETT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehHHHHHhccchHHHHHHHHHHHHHH------cCCeEEEEECH
Confidence 459999999999999999999987 55666666544321 1222222222211 34679999999
Q ss_pred CCC-----------CHHHHHHHHHHHHh-----cCCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhc
Q psy4285 381 DAM-----------TNDAQNALRRIIEK-----FTTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 381 d~l-----------~~~~~~~Ll~~le~-----~~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~ 441 (533)
|.+ ....+..+..+++. ...++.+|++||.+..+++++++ ||. .+.+++|+.++..+++..
T Consensus 120 d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~ 199 (285)
T 3h4m_A 120 DAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKI 199 (285)
T ss_dssp HHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHH
T ss_pred HHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHH
Confidence 987 44556666666653 34578899999999999999999 884 899999999999988876
Q ss_pred C--------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy4285 442 D--------DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLL 477 (533)
Q Consensus 442 ~--------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~ 477 (533)
. +.++..+.. ...|+++.++..-+..+
T Consensus 200 ~~~~~~~~~~~~~~~l~~---------~~~g~~~~~i~~l~~~a 234 (285)
T 3h4m_A 200 HTRKMNLAEDVNLEEIAK---------MTEGCVGAELKAICTEA 234 (285)
T ss_dssp HHTTSCBCTTCCHHHHHH---------HCTTCCHHHHHHHHHHH
T ss_pred HHhcCCCCCcCCHHHHHH---------HcCCCCHHHHHHHHHHH
Confidence 5 112333333 56678887776654443
No 29
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.63 E-value=1.5e-15 Score=148.52 Aligned_cols=150 Identities=21% Similarity=0.254 Sum_probs=106.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC------CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD------RGIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
+++|+||||||||++|+++++.+ +..++.+++++. .....++..+..... ..++++||||+|
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~------~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~------~~p~il~iDEid 118 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMWFGESEANVREIFDKARQ------AAPCVLFFDELD 118 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT------TCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHH------TCSEEEEECSTT
T ss_pred eEEEECCCCcCHHHHHHHHHHHh------CCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHh------cCCeEEEEEChH
Confidence 59999999999999999999987 556677765432 122233333332221 246899999999
Q ss_pred CCCHH--------------HHHHHHHHHHh--cCCCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhhcC
Q psy4285 382 AMTND--------------AQNALRRIIEK--FTTNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 382 ~l~~~--------------~~~~Ll~~le~--~~~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~~ 442 (533)
.+... .++.|++.++. ...++.+|++||.++.+++++++ || ..+.+++|+.++..+++...
T Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~ 198 (301)
T 3cf0_A 119 SIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 198 (301)
T ss_dssp HHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH
T ss_pred HHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHH
Confidence 87654 35778888874 34578999999999999999998 99 47888999998888877654
Q ss_pred --------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy4285 443 --------DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLV 478 (533)
Q Consensus 443 --------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~ 478 (533)
+.++..+. . .+.|+++.|+..-+.+++
T Consensus 199 l~~~~~~~~~~~~~la-------~--~~~g~sg~dl~~l~~~a~ 233 (301)
T 3cf0_A 199 LRKSPVAKDVDLEFLA-------K--MTNGFSGADLTEICQRAC 233 (301)
T ss_dssp HTTSCBCSSCCHHHHH-------H--TCSSCCHHHHHHHHHHHH
T ss_pred HccCCCCccchHHHHH-------H--HcCCCCHHHHHHHHHHHH
Confidence 11122222 2 467888888776655544
No 30
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.63 E-value=5.3e-15 Score=150.00 Aligned_cols=148 Identities=18% Similarity=0.210 Sum_probs=106.7
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCc------hhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG------IGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
.++||+||||||||++|+++++.+ +..++.+++++..+ ...++..+..... ..++||||||+
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~------~~~~il~iDEi 216 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAES------NATFFNISAASLTSKYVGEGEKLVRALFAVARE------LQPSIIFIDQV 216 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT------TCEEEEECSCCC-------CHHHHHHHHHHHHH------SSSEEEEEETG
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh------cCcEEEeeHHHhhccccchHHHHHHHHHHHHHh------cCCeEEEEECc
Confidence 469999999999999999999987 67788888876433 2223333222221 24579999999
Q ss_pred CCCC-----------HHHHHHHHHHHHhc----CCCcEEEEEeCCCCCCChhhhccce-eeeecCCCHHHHHHHhhcC--
Q psy4285 381 DAMT-----------NDAQNALRRIIEKF----TTNVRFCIICNYLSKIPPAIQSRCT-RFRFGPLDSSLIMSRLDYD-- 442 (533)
Q Consensus 381 d~l~-----------~~~~~~Ll~~le~~----~~~~~~I~~~n~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~-- 442 (533)
|.+. ...++.|+..++.. +.++++|++||.+..+++++++||. .+.|..|+.++...++..+
T Consensus 217 d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~ 296 (389)
T 3vfd_A 217 DSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLC 296 (389)
T ss_dssp GGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT
T ss_pred hhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHH
Confidence 9883 34566778877743 4568899999999999999999995 7899999999998888754
Q ss_pred -------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 443 -------DISFFNIIIWYIKIQEIKIEKGLALTDILTEIS 475 (533)
Q Consensus 443 -------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~ 475 (533)
+.++..+.. ...|++..++..-+.
T Consensus 297 ~~~~~l~~~~~~~la~---------~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 297 KQGSPLTQKELAQLAR---------MTDGYSGSDLTALAK 327 (389)
T ss_dssp TSCCCSCHHHHHHHHH---------HTTTCCHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHH---------HcCCCCHHHHHHHHH
Confidence 333444333 567888877755443
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.63 E-value=3e-15 Score=147.04 Aligned_cols=127 Identities=20% Similarity=0.241 Sum_probs=96.6
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHcccccc-CcceEEecCCCCCc------hhHHHHHHHHHHhcccCCCCCcEEEEEeC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQF-NAMVLELNASDDRG------IGIVRDQIFQFASTKTMHKSSYKLIILDE 379 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDE 379 (533)
.+++|+||||||||++|+++++.+...... ...++.+++++..+ .......+.. . .+++|||||
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~---~------~~~vl~iDE 138 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKR---A------MGGVLFIDE 138 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHH---H------TTSEEEEET
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHh---c------CCCEEEEEC
Confidence 359999999999999999999998654321 23566776654322 1122222221 1 346999999
Q ss_pred CCCC---------CHHHHHHHHHHHHhcCCCcEEEEEeCCCC-----CCChhhhccc-eeeeecCCCHHHHHHHhhcC
Q psy4285 380 ADAM---------TNDAQNALRRIIEKFTTNVRFCIICNYLS-----KIPPAIQSRC-TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 380 ~d~l---------~~~~~~~Ll~~le~~~~~~~~I~~~n~~~-----~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~ 442 (533)
+|.+ ....++.|++.+++.+.++.+|++||... .++|++++|| ..+.|++|+.+++..++.+.
T Consensus 139 id~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 216 (309)
T 3syl_A 139 AYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHM 216 (309)
T ss_dssp GGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHH
T ss_pred hhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHH
Confidence 9987 78889999999999888899999997543 3579999999 89999999999999888665
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.63 E-value=6.1e-15 Score=146.83 Aligned_cols=123 Identities=20% Similarity=0.256 Sum_probs=100.8
Q ss_pred CCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCH
Q psy4285 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 385 (533)
Q Consensus 306 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~ 385 (533)
.++++|+||||||||++|+++++.+ +..++.++++.......+...+.. ...+.+|||||++.+..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~vl~lDEi~~l~~ 120 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEM------SANIKTTAAPMIEKSGDLAAILTN--------LSEGDILFIDEIHRLSP 120 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHT------TCCEEEEEGGGCCSHHHHHHHHHT--------CCTTCEEEEETGGGCCH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh------CCCeEEecchhccchhHHHHHHHh--------ccCCCEEEEechhhcCH
Confidence 3469999999999999999999987 556777777665554444443322 14568999999999999
Q ss_pred HHHHHHHHHHHhcC------------------CCcEEEEEeCCCCCCChhhhccc-eeeeecCCCHHHHHHHhhcC
Q psy4285 386 DAQNALRRIIEKFT------------------TNVRFCIICNYLSKIPPAIQSRC-TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 386 ~~~~~Ll~~le~~~------------------~~~~~I~~~n~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~ 442 (533)
..++.|++.+++.. +.+++|++||....+++++++|| ..+.|.+|+.+++..++.+.
T Consensus 121 ~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~ 196 (338)
T 3pfi_A 121 AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKA 196 (338)
T ss_dssp HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHH
Confidence 99999999998742 13789999999999999999999 79999999999999888765
No 33
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.62 E-value=9.1e-15 Score=142.80 Aligned_cols=148 Identities=20% Similarity=0.216 Sum_probs=104.7
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCc------hhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG------IGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
.+++|+||||||||++|+++++.+ +..++.+++++..+ ....+..+..... ..+++|||||+
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~------~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~vl~iDEi 122 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC------SATFLNISAASLTSKYVGDGEKLVRALFAVARH------MQPSIIFIDEV 122 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT------TCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHH------TCSEEEEEETG
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh------CCCeEEeeHHHHhhcccchHHHHHHHHHHHHHH------cCCcEEEeccH
Confidence 359999999999999999999987 55677777665322 2223333322211 35689999999
Q ss_pred CCCC-----------HHHHHHHHHHHHhcC-----CCcEEEEEeCCCCCCChhhhccc-eeeeecCCCHHHHHHHhhcC-
Q psy4285 381 DAMT-----------NDAQNALRRIIEKFT-----TNVRFCIICNYLSKIPPAIQSRC-TRFRFGPLDSSLIMSRLDYD- 442 (533)
Q Consensus 381 d~l~-----------~~~~~~Ll~~le~~~-----~~~~~I~~~n~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~- 442 (533)
|.+. ...++.|+..++..+ .++.+|++||.+..+++++++|| ..+.++.|+.++...++...
T Consensus 123 d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~ 202 (297)
T 3b9p_A 123 DSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLL 202 (297)
T ss_dssp GGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHH
Confidence 9883 345677888888754 35789999999999999999999 57778888888877776553
Q ss_pred --------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 443 --------DISFFNIIIWYIKIQEIKIEKGLALTDILTEIS 475 (533)
Q Consensus 443 --------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~ 475 (533)
+..+..+.. .+.|++..++..-+.
T Consensus 203 ~~~~~~~~~~~~~~la~---------~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 203 QKQGSPLDTEALRRLAK---------ITDGYSGSDLTALAK 234 (297)
T ss_dssp GGGSCCSCHHHHHHHHH---------HTTTCCHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHH---------HcCCCCHHHHHHHHH
Confidence 223333333 567888887755443
No 34
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.61 E-value=9.6e-15 Score=139.81 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=98.8
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCc------hhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG------IGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
.+++|+||||||||++|+++++.+ +..++.+++++... ...++..+..... ..+.+|||||+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~------~~~~vl~iDei 107 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA------QVPFLAMAGAEFVEVIGGLGAARVRSLFKEARA------RAPCIVYIDEI 107 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH------TCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHH------TCSEEEEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh------CCCEEEechHHHHhhccChhHHHHHHHHHHHHh------cCCeEEEEeCc
Confidence 459999999999999999999987 55677777665322 1223332222211 24689999999
Q ss_pred CCCCH------------HHHHH---HHHHHHh--cCCCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhh
Q psy4285 381 DAMTN------------DAQNA---LRRIIEK--FTTNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLD 440 (533)
Q Consensus 381 d~l~~------------~~~~~---Ll~~le~--~~~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~ 440 (533)
|.+.. ..+.. ++..++. .+.++.+|++||.+..+++++++ || ..+.+.+|+.++..+++.
T Consensus 108 d~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~ 187 (262)
T 2qz4_A 108 DAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFE 187 (262)
T ss_dssp -------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHH
T ss_pred chhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHH
Confidence 99832 22333 4444443 34578899999999999999999 99 588899999999888877
Q ss_pred cC--------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy4285 441 YD--------DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLV 478 (533)
Q Consensus 441 ~~--------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~ 478 (533)
+. +.+. . ...+.. ...|+++.++..-+..++
T Consensus 188 ~~~~~~~~~~~~~~--~---~~~l~~--~~~g~~~~~l~~l~~~a~ 226 (262)
T 2qz4_A 188 QHLKSLKLTQSSTF--Y---SQRLAE--LTPGFSGADIANICNEAA 226 (262)
T ss_dssp HHHHHTTCCBTHHH--H---HHHHHH--TCTTCCHHHHHHHHHHHH
T ss_pred HHHHhCCCCcchhh--H---HHHHHH--HCCCCCHHHHHHHHHHHH
Confidence 65 1111 0 011111 456788887766665544
No 35
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.61 E-value=1.2e-16 Score=175.72 Aligned_cols=124 Identities=23% Similarity=0.257 Sum_probs=89.5
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
.+++|+||||||||++|+++|..+ +..++.+++++.. ....++..+...... .++++||||+
T Consensus 512 ~~vLL~GppGtGKT~Lakala~~~------~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~------~p~vl~iDEi 579 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMWFGESEANVREIFDKARQA------APCVLFFDEL 579 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHHHH------TCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHH------CSBCCCCSSH
T ss_pred ceeEEECCCCCCHHHHHHHHHHHh------CCCEEEEechHhhhhhcCccHHHHHHHHHHHHhc------CCeEEEEECh
Confidence 359999999999999999999998 4556666665532 223444443333222 3579999999
Q ss_pred CCCCH--------------HHHHHHHHHHHh--cCCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhc
Q psy4285 381 DAMTN--------------DAQNALRRIIEK--FTTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 381 d~l~~--------------~~~~~Ll~~le~--~~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~ 441 (533)
|.+.. ...+.|+..|+. ...++.+|+|||.++.+++++++ ||. .+.|+.|+.++...++..
T Consensus 580 d~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~ 659 (806)
T 1ypw_A 580 DSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 659 (806)
T ss_dssp HHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTT
T ss_pred hhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHH
Confidence 98732 223555555553 23568899999999999999999 995 888899999999998887
Q ss_pred C
Q psy4285 442 D 442 (533)
Q Consensus 442 ~ 442 (533)
.
T Consensus 660 ~ 660 (806)
T 1ypw_A 660 N 660 (806)
T ss_dssp T
T ss_pred H
Confidence 6
No 36
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.61 E-value=5.8e-15 Score=147.75 Aligned_cols=150 Identities=18% Similarity=0.158 Sum_probs=107.1
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCc------hhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG------IGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
.+++|+||||||||++|+++|+.+ +..++.+++++... ...++..+.... ...+.+|||||+
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~------~~~~~vl~iDEi 185 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQS------GATFFSISASSLTSKWVGEGEKMVRALFAVAR------CQQPAVIFIDEI 185 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHT------TCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHH------HTCSEEEEEETH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc------CCeEEEEehHHhhccccchHHHHHHHHHHHHH------hcCCeEEEEeCc
Confidence 359999999999999999999987 56677777665322 122232222221 135689999999
Q ss_pred CCCCH-----------HHHHHHHHHHHh----cCCCcEEEEEeCCCCCCChhhhccce-eeeecCCCHHHHHHHhhcC--
Q psy4285 381 DAMTN-----------DAQNALRRIIEK----FTTNVRFCIICNYLSKIPPAIQSRCT-RFRFGPLDSSLIMSRLDYD-- 442 (533)
Q Consensus 381 d~l~~-----------~~~~~Ll~~le~----~~~~~~~I~~~n~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~-- 442 (533)
|.+.. ..++.|+..++. ...++.+|++||.+..+++++++||. .+.+..|+.++..+++...
T Consensus 186 d~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~ 265 (357)
T 3d8b_A 186 DSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMS 265 (357)
T ss_dssp HHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHh
Confidence 88732 345677777764 24578899999999999999999996 7788889988888877654
Q ss_pred -------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy4285 443 -------DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLL 477 (533)
Q Consensus 443 -------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~ 477 (533)
+.++..+.. .+.|+++.++..-+...
T Consensus 266 ~~~~~l~~~~l~~la~---------~t~G~s~~dl~~l~~~a 298 (357)
T 3d8b_A 266 KEQCCLSEEEIEQIVQ---------QSDAFSGADMTQLCREA 298 (357)
T ss_dssp TSCBCCCHHHHHHHHH---------HTTTCCHHHHHHHHHHH
T ss_pred hcCCCccHHHHHHHHH---------HcCCCCHHHHHHHHHHH
Confidence 333444433 56789988876655443
No 37
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.60 E-value=9.8e-15 Score=157.77 Aligned_cols=186 Identities=22% Similarity=0.287 Sum_probs=126.9
Q ss_pred ccccccCCCC--HHHHHHHHHHHhhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEe
Q psy4285 266 TVYNSVGYPT--KTEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLEL 343 (533)
Q Consensus 266 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 343 (533)
.-|.+++... ...+.+.+.+.+. +.+....+ ....+.++|||||||||||++|+++|+++ +..++.+
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~-~p~~f~~~----g~~~p~GILL~GPPGTGKT~LAraiA~el------g~~~~~v 269 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLR-HPALFKAI----GVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLI 269 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHH-CCGGGTSC----CCCCCCEEEEECCTTSCHHHHHHHHHTTT------TCEEEEE
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcc-CHHHHhhc----CCCCCCeEEEECCCCCCHHHHHHHHHHHh------CCeEEEE
Confidence 4566666543 3455555544332 22222221 11122359999999999999999999987 6777888
Q ss_pred cCCCC------CchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHhc--CCCcEE
Q psy4285 344 NASDD------RGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN-----------DAQNALRRIIEKF--TTNVRF 404 (533)
Q Consensus 344 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-----------~~~~~Ll~~le~~--~~~~~~ 404 (533)
++++. .+...++..+.... ...++||||||+|.+.+ ...+.|+..|+.. ..++.+
T Consensus 270 ~~~~l~sk~~gese~~lr~lF~~A~------~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 270 NGPEIMSKLAGESESNLRKAFEEAE------KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp EHHHHHSSCTTHHHHHHHHHHHHHT------TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred EhHHhhcccchHHHHHHHHHHHHHH------HcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 76542 22334444433322 13578999999999853 2356677788753 345788
Q ss_pred EEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhhcC--------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q psy4285 405 CIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLDYD--------DISFFNIIIWYIKIQEIKIEKGLALTDILTE 473 (533)
Q Consensus 405 I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~~--------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~ 473 (533)
|++||.++.+|+++++ || ..+.+..|+.++..+++... ..++..+.. .+.|+++.|+..-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~---------~T~GfsgaDL~~L 414 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN---------ETHGHVGADLAAL 414 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHH---------HCCSCCHHHHHHH
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHH---------hcCCCCHHHHHHH
Confidence 9999999999999999 89 47899999999999888766 234555555 7889999998765
Q ss_pred HHHH
Q psy4285 474 ISLL 477 (533)
Q Consensus 474 ~~~~ 477 (533)
+.++
T Consensus 415 v~eA 418 (806)
T 3cf2_A 415 CSEA 418 (806)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.59 E-value=7.1e-15 Score=148.13 Aligned_cols=70 Identities=17% Similarity=0.167 Sum_probs=60.1
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeC------------CCCCCChhhhccceeeeecCCCHHHHHHHh
Q psy4285 372 YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN------------YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 372 ~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n------------~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l 439 (533)
++||||||+|.++.+.++.|++.++++...+ ++++++ .+..++++++|||..+.|++|+.+++.+++
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il 268 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQIL 268 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHH
Confidence 4699999999999999999999999876554 444554 366899999999999999999999999999
Q ss_pred hcC
Q psy4285 440 DYD 442 (533)
Q Consensus 440 ~~~ 442 (533)
.+.
T Consensus 269 ~~~ 271 (368)
T 3uk6_A 269 RIR 271 (368)
T ss_dssp HHH
T ss_pred HHH
Confidence 854
No 39
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=5.8e-15 Score=147.97 Aligned_cols=165 Identities=24% Similarity=0.355 Sum_probs=127.5
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCC-HHHHHHHHHhcCCCHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVT-PDGKKAIIDLSDGDMRKVLNIL 79 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~g~~r~a~~~l 79 (533)
||+|+.+++||++||.+.+++|+|+|||+.++|++++.+++.++|++++.++++.++ +++++.+++.++||+|+|++.|
T Consensus 158 le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 158 MEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp HHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 477889999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhCCCCcchh----------hHHhhhhhhccccch-------hHHHHHh----chHHHHhhc--------CCChhh
Q psy4285 80 QSAATAHADEVNED----------TIFTLLVSRVEKYRP-------STLDELV----SHQDIISTI--------EIPESM 130 (533)
Q Consensus 80 ~~~~~~~~~~i~~~----------~i~~~~~~~~ek~~~-------~~l~~ll----s~~~~l~~l--------~~~~~~ 130 (533)
+.++......|+.+ .+.+++.....+-.+ +.+++++ +..+++..+ +++...
T Consensus 238 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~ 317 (354)
T 1sxj_E 238 ESMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTN 317 (354)
T ss_dssp THHHHTTTTEECSSCCCCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTTSCHHH
T ss_pred HHHHHhCCCCcCcCcCCCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCHHH
Confidence 99987543234432 222222211111111 1233432 222333222 256667
Q ss_pred HHHHHhhccCccccccCCCChhhHHHHHHHHHhcc
Q psy4285 131 LVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 165 (533)
Q Consensus 131 ~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~ 165 (533)
+..++..++++++++..|.++.++++++++.++..
T Consensus 318 l~~~~~~l~~~d~~l~~g~~~~~~le~~~~~~~~~ 352 (354)
T 1sxj_E 318 KSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCC 352 (354)
T ss_dssp HHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 78888889999999999999999999999998753
No 40
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.58 E-value=3.2e-15 Score=147.04 Aligned_cols=127 Identities=20% Similarity=0.342 Sum_probs=94.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHH---------------HHHHhcccCCCCCc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI---------------FQFASTKTMHKSSY 372 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~ 372 (533)
+++|+||||||||++|+++++.+.+. +..++.++++...........+ ..... ...+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~---~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-----~~~~ 120 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVR-----RRPY 120 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSC---GGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHH-----HCSS
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCC---CcceEEeecccccccccHHHhcCCCCccccccccchHHHHHH-----hCCC
Confidence 59999999999999999999998554 2345666654433222222211 11111 1245
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CCcEEEEEeCC--------------------------CCCCC
Q psy4285 373 KLIILDEADAMTNDAQNALRRIIEKFT-----------TNVRFCIICNY--------------------------LSKIP 415 (533)
Q Consensus 373 ~vliiDE~d~l~~~~~~~Ll~~le~~~-----------~~~~~I~~~n~--------------------------~~~l~ 415 (533)
+++||||+|.++.+.++.|++.|++.. .++.+|+|||. ...++
T Consensus 121 ~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 200 (311)
T 4fcw_A 121 SVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFR 200 (311)
T ss_dssp EEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSC
T ss_pred eEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCC
Confidence 799999999999999999999999753 36669999998 44689
Q ss_pred hhhhccc-eeeeecCCCHHHHHHHhhcC
Q psy4285 416 PAIQSRC-TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 416 ~~l~sR~-~~i~~~~~~~~~~~~~l~~~ 442 (533)
+++.+|| ..+.|.||+.+++..++.+.
T Consensus 201 ~~l~~R~~~~~~~~p~~~~~~~~i~~~~ 228 (311)
T 4fcw_A 201 PEFLNRLDEIVVFRPLTKEQIRQIVEIQ 228 (311)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEeCCCCHHHHHHHHHHH
Confidence 9999999 68889999988888777664
No 41
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.58 E-value=4e-15 Score=146.17 Aligned_cols=160 Identities=21% Similarity=0.223 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhhhchhhhhhhcccccc--------------cCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceE
Q psy4285 276 KTEITNILRWLLNESMDLCYKINRFIDE--------------NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVL 341 (533)
Q Consensus 276 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~--------------~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~ 341 (533)
+..+...+.....|++.....+...+.. ....+++|+||||||||++|+++++.+ +..++
T Consensus 6 ~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l------~~~~~ 79 (310)
T 1ofh_A 6 PREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA------NAPFI 79 (310)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH------TCCEE
T ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEE
Confidence 4445555554455666666555544432 223469999999999999999999988 44566
Q ss_pred EecCCCCCc--------hhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHH------------HHHHHHHHHhc---
Q psy4285 342 ELNASDDRG--------IGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA------------QNALRRIIEKF--- 398 (533)
Q Consensus 342 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~------------~~~Ll~~le~~--- 398 (533)
.++++.... ...+++.......... ....++||||||+|.+.... ++.|++.+++.
T Consensus 80 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 158 (310)
T 1ofh_A 80 KVEATKFTEVGYVGKEVDSIIRDLTDSAGGAID-AVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVS 158 (310)
T ss_dssp EEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHH-HHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEE
T ss_pred EEcchhcccCCccCccHHHHHHHHHHHhhHHHh-hccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEe
Confidence 666544221 1123332221100000 00136799999999997654 88999999863
Q ss_pred -------CCCcEEEEEe----CCCCCCChhhhccce-eeeecCCCHHHHHHHhhcC
Q psy4285 399 -------TTNVRFCIIC----NYLSKIPPAIQSRCT-RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 399 -------~~~~~~I~~~----n~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~ 442 (533)
..++.+|+++ +.+..+++++++||. .+.|++|+.+++..++.+.
T Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 159 TKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEP 214 (310)
T ss_dssp ETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSS
T ss_pred cccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhh
Confidence 3467888885 456689999999995 6999999999999999864
No 42
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.57 E-value=3.6e-14 Score=140.31 Aligned_cols=123 Identities=20% Similarity=0.256 Sum_probs=98.7
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHH
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 386 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~ 386 (533)
.+++|+||||||||++|+++++.+ +..++.++++.......+.+. +... ...+.+|||||++.++..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~------~~~~~~~~~~~~~~~~~l~~~---l~~~----~~~~~~l~lDEi~~l~~~ 105 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL------GVNLRVTSGPAIEKPGDLAAI---LANS----LEEGDILFIDEIHRLSRQ 105 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH------TCCEEEECTTTCCSHHHHHHH---HTTT----CCTTCEEEETTTTSCCHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeccccCChHHHHHH---HHHh----ccCCCEEEEECCcccccc
Confidence 469999999999999999999987 456667777665444333332 2210 135679999999999999
Q ss_pred HHHHHHHHHHhcC------------------CCcEEEEEeCCCCCCChhhhccc-eeeeecCCCHHHHHHHhhcC
Q psy4285 387 AQNALRRIIEKFT------------------TNVRFCIICNYLSKIPPAIQSRC-TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 387 ~~~~Ll~~le~~~------------------~~~~~I~~~n~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~ 442 (533)
.++.|++.+++.. .++++|++||....+++++.+|| ..+.+.+|+.+++..++.+.
T Consensus 106 ~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~ 180 (324)
T 1hqc_A 106 AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRD 180 (324)
T ss_dssp HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHH
Confidence 9999999998742 35789999999999999999999 59999999999998887764
No 43
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.2e-14 Score=140.99 Aligned_cols=155 Identities=8% Similarity=0.084 Sum_probs=104.3
Q ss_pred HhhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccc----cCcceEEecCCCCCchhH-HHH----
Q psy4285 286 LLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ----FNAMVLELNASDDRGIGI-VRD---- 356 (533)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~----~~~~~~~~~~~~~~~~~~-~~~---- 356 (533)
+......+...+...+..+.+++++|+||||||||++++.+++.+..... ....++++|+........ +..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~ 104 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFA 104 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHH
Confidence 33344455566777777777788999999999999999999999854321 123567788765433211 111
Q ss_pred -------------HHHHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH---hcCCCcEEEEEeCCCCC----CCh
Q psy4285 357 -------------QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIE---KFTTNVRFCIICNYLSK----IPP 416 (533)
Q Consensus 357 -------------~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le---~~~~~~~~I~~~n~~~~----l~~ 416 (533)
.+..+............|+++||+|.+. .++.|+.+++ ....++.+|+++|..+. +++
T Consensus 105 L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~ 182 (318)
T 3te6_A 105 ISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINI 182 (318)
T ss_dssp HSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHT
T ss_pred hcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhhcch
Confidence 1111111110012456899999999998 5666666664 33456788889988753 566
Q ss_pred hhhccc--eeeeecCCCHHHHHHHhhcC
Q psy4285 417 AIQSRC--TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 417 ~l~sR~--~~i~~~~~~~~~~~~~l~~~ 442 (533)
+++||| ..+.|.||+.+++.+++.+.
T Consensus 183 ~v~SR~~~~~i~F~pYt~~el~~Il~~R 210 (318)
T 3te6_A 183 MPSLKAHFTEIKLNKVDKNELQQMIITR 210 (318)
T ss_dssp CHHHHTTEEEEECCCCCHHHHHHHHHHH
T ss_pred hhhccCCceEEEeCCCCHHHHHHHHHHH
Confidence 778998 57999999999999988876
No 44
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.55 E-value=1.1e-14 Score=150.77 Aligned_cols=150 Identities=23% Similarity=0.309 Sum_probs=108.5
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC----Cc--hhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD----RG--IGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
.++||+||||||||++|+++++.+ +..++.+++++. .+ ...++..+..... ..+++|||||+
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~~------~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~------~~p~iLfLDEI 306 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIMSKLAGESESNLRKAFEEAEK------NAPAIIFIDEL 306 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC------SSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHH------TCSEEEEEESH
T ss_pred CcEEEECcCCCCHHHHHHHHHHHh------CCCEEEEEchHhhhhhcchhHHHHHHHHHHHHh------cCCcEEEecch
Confidence 359999999999999999999987 567777775432 11 2223333322211 34689999999
Q ss_pred CCCCH-----------HHHHHHHHHHHh--cCCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcC--
Q psy4285 381 DAMTN-----------DAQNALRRIIEK--FTTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYD-- 442 (533)
Q Consensus 381 d~l~~-----------~~~~~Ll~~le~--~~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~-- 442 (533)
|.+.. ..++.|++.|+. ...++++|++||.+..+++++++ ||. .+.|.+|+.++..+++...
T Consensus 307 d~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~ 386 (489)
T 3hu3_A 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (489)
T ss_dssp HHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTT
T ss_pred hhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHh
Confidence 77643 567889999985 34578899999999999999999 774 6899999999999888765
Q ss_pred ------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy4285 443 ------DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLL 477 (533)
Q Consensus 443 ------~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~ 477 (533)
+.++..+.. .+.|+++.|+..-+..+
T Consensus 387 ~~~l~~~~~l~~la~---------~t~g~s~~dL~~L~~~A 418 (489)
T 3hu3_A 387 NMKLADDVDLEQVAN---------ETHGHVGADLAALCSEA 418 (489)
T ss_dssp TSCBCTTCCHHHHHH---------TCTTCCHHHHHHHHHHH
T ss_pred cCCCcchhhHHHHHH---------HccCCcHHHHHHHHHHH
Confidence 222344333 56788888876554443
No 45
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=1.6e-14 Score=143.75 Aligned_cols=167 Identities=40% Similarity=0.687 Sum_probs=129.9
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+|+.+++||++||++++++|+|+|||+.++|++++.+++.++|.++++++++.++++++..++..|+||+|+|++.|+
T Consensus 134 le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~ 213 (340)
T 1sxj_C 134 IERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQ 213 (340)
T ss_dssp HHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred HHHHhCCC----CcchhhHHhhhhhh-----------ccccch----hHHHHHhc-----hHHHHh-------hcCCC-h
Q psy4285 81 SAATAHAD----EVNEDTIFTLLVSR-----------VEKYRP----STLDELVS-----HQDIIS-------TIEIP-E 128 (533)
Q Consensus 81 ~~~~~~~~----~i~~~~i~~~~~~~-----------~ek~~~----~~l~~lls-----~~~~l~-------~l~~~-~ 128 (533)
.++..... .|+.+.+.++++.. +.+-.. ..+++++. ..+++. .+.++ .
T Consensus 214 ~~~~~~~~~~~~~it~~~v~~~~~~~~~~~i~~l~~~i~~~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ 293 (340)
T 1sxj_C 214 SCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNE 293 (340)
T ss_dssp TTTTTTCSSSCCCBCHHHHHHHTTCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSCCSSH
T ss_pred HHHHhcCCcccccccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcH
Confidence 88654331 58887765543311 111111 11233321 122222 12344 6
Q ss_pred hhHHHHHhhccCccccccCCCChhhHHHHHHHHHhcccc
Q psy4285 129 SMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 167 (533)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~ 167 (533)
..+..++..++++++++..|+++..+++.++..++....
T Consensus 294 ~~~~~~~~~l~~~~~~l~~g~~~~l~le~l~~~l~~~~~ 332 (340)
T 1sxj_C 294 ETRVHLLTKLADIEYSISKGGNDQIQGSAVIGAIKASFE 332 (340)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhh
Confidence 677788888999999999999999999999999875443
No 46
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.54 E-value=7.3e-14 Score=133.29 Aligned_cols=124 Identities=27% Similarity=0.298 Sum_probs=89.7
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
.+++|+||||||||++|+++++.+ +.+++.+++++.. ....++..+.... ...+.+++|||+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~il~iDei 113 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA------KVPFFTISGSDFVEMFVGVGASRVRDMFEQAK------KAAPCIIFIDEI 113 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH------TCCEEEECSCSSTTSCCCCCHHHHHHHHHHHH------TTCSEEEEETTH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc------CCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHH------HcCCeeehhhhh
Confidence 359999999999999999999987 4556777766532 2233443333321 134679999999
Q ss_pred CCCCH--------------HHHHHHHHHHHhc--CCCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhhc
Q psy4285 381 DAMTN--------------DAQNALRRIIEKF--TTNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 381 d~l~~--------------~~~~~Ll~~le~~--~~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~ 441 (533)
|.+.. ...+.++..++.. ..++.+|++||.++.+++++.+ || ..+.+.+|+.++..+++..
T Consensus 114 d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~ 193 (257)
T 1lv7_A 114 DAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKV 193 (257)
T ss_dssp HHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHH
T ss_pred hhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHH
Confidence 87642 3456677777643 4567899999999999999998 88 4778888888887776654
Q ss_pred C
Q psy4285 442 D 442 (533)
Q Consensus 442 ~ 442 (533)
.
T Consensus 194 ~ 194 (257)
T 1lv7_A 194 H 194 (257)
T ss_dssp H
T ss_pred H
Confidence 3
No 47
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=4.6e-14 Score=148.21 Aligned_cols=128 Identities=28% Similarity=0.390 Sum_probs=96.9
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccC------------CCCCcEE
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTM------------HKSSYKL 374 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~v 374 (533)
++++|+||||||||++|+++++++ +..++.+++++......+...+......... ....+.|
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l------~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v 151 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL------GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFV 151 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT------TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeE
Confidence 459999999999999999999998 6778899998877665554443322111100 1245789
Q ss_pred EEEeCCCCCCHHHH---HHHHHHHHhcCCCcEEEEEeCCCC-CCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 375 IILDEADAMTNDAQ---NALRRIIEKFTTNVRFCIICNYLS-KIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 375 liiDE~d~l~~~~~---~~Ll~~le~~~~~~~~I~~~n~~~-~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
|||||+|.+....+ +.|++++++. +..+|++||... ...+++.+||..+.|.+|+.+++.+++..+
T Consensus 152 liIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i 221 (516)
T 1sxj_A 152 IIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTI 221 (516)
T ss_dssp EEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHH
T ss_pred EEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHH
Confidence 99999999976544 7888888864 456788887654 456789999999999999999999988765
No 48
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.53 E-value=9.2e-14 Score=143.70 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=62.5
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCC-------------CCCCChhhhccceeeeecCCCHHHHHHHh
Q psy4285 373 KLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY-------------LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 373 ~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~-------------~~~l~~~l~sR~~~i~~~~~~~~~~~~~l 439 (533)
+|+||||+++|+.+++++|+++||+++.+ .||++||. +..++|+++|||..+.|.+++.+++.++|
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 69999999999999999999999998887 57777743 66899999999999999999999999999
Q ss_pred hcC
Q psy4285 440 DYD 442 (533)
Q Consensus 440 ~~~ 442 (533)
.+.
T Consensus 376 ~~~ 378 (456)
T 2c9o_A 376 KIR 378 (456)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 49
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.52 E-value=3.1e-14 Score=138.35 Aligned_cols=126 Identities=16% Similarity=0.161 Sum_probs=85.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
.++|+||||||||++|+++|+.+ +..++.+++++.. ....+++.+........ ...++||+|||+|
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~--~~~~~vl~iDEiD 109 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR--KGNMCCLFINDLD 109 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHT--TSSCCCEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHh--cCCCeEEEEechh
Confidence 48999999999999999999998 6667777754321 12233333333211101 2357899999999
Q ss_pred CCCH-------------HHHHHHHHHHHh-------------cCCCcEEEEEeCCCCCCChhhhc--cceeeeecCCCHH
Q psy4285 382 AMTN-------------DAQNALRRIIEK-------------FTTNVRFCIICNYLSKIPPAIQS--RCTRFRFGPLDSS 433 (533)
Q Consensus 382 ~l~~-------------~~~~~Ll~~le~-------------~~~~~~~I~~~n~~~~l~~~l~s--R~~~i~~~~~~~~ 433 (533)
.+.+ ..++.|++.|+. ...++.+|+|||.++.+++++++ ||....+ .|+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~-~P~~~ 188 (293)
T 3t15_A 110 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRE 188 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE-CCCHH
T ss_pred hhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe-CcCHH
Confidence 8865 234788888862 23568999999999999999997 7865555 45888
Q ss_pred HHHHHhhcC
Q psy4285 434 LIMSRLDYD 442 (533)
Q Consensus 434 ~~~~~l~~~ 442 (533)
+..+++...
T Consensus 189 ~r~~Il~~~ 197 (293)
T 3t15_A 189 DRIGVCTGI 197 (293)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888755
No 50
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.52 E-value=4.1e-14 Score=142.89 Aligned_cols=163 Identities=17% Similarity=0.207 Sum_probs=106.6
Q ss_pred cCCCCHHHHHHHHHHHhhhchhhhhhhccccc----c--------------------------cCCCceeEeCCCCCChH
Q psy4285 271 VGYPTKTEITNILRWLLNESMDLCYKINRFID----E--------------------------NELPHLLFYGPPGTGKT 320 (533)
Q Consensus 271 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~----~--------------------------~~~~~~ll~GppGtGKT 320 (533)
...+....+...+.....|++.+.+.+..++. . ...++++|+||||||||
T Consensus 7 ~~~~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT 86 (376)
T 1um8_A 7 SYIPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKT 86 (376)
T ss_dssp SCCCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHH
T ss_pred cCCCCHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHH
Confidence 34556666766666666677776666655441 0 12346999999999999
Q ss_pred HHHHHHHHHHccccccCcceEEecCCCCCc--------hhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHH------
Q psy4285 321 TTILACARKLYTKAQFNAMVLELNASDDRG--------IGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND------ 386 (533)
Q Consensus 321 ~la~~la~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~------ 386 (533)
++|+++|+.+ +..++.++++.... ...+...+...... .....++++||||+|.+...
T Consensus 87 ~la~~la~~l------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~vl~iDEi~~l~~~~~~~~~ 158 (376)
T 1um8_A 87 LMAQTLAKHL------DIPIAISDATSLTEAGYVGEDVENILTRLLQASDWN--VQKAQKGIVFIDEIDKISRLSENRSI 158 (376)
T ss_dssp HHHHHHHHHT------TCCEEEEEGGGCC--------CTHHHHHHHHHTTTC--HHHHTTSEEEEETGGGC---------
T ss_pred HHHHHHHHHh------CCCEEEecchhhhhcCcCCccHHHHHHHHHhhccch--hhhcCCeEEEEcCHHHHhhhcCCCce
Confidence 9999999987 44556665543221 11122222111000 00124679999999999887
Q ss_pred --------HHHHHHHHHHhcC---------------------CCcEEEEEeCC---------------------------
Q psy4285 387 --------AQNALRRIIEKFT---------------------TNVRFCIICNY--------------------------- 410 (533)
Q Consensus 387 --------~~~~Ll~~le~~~---------------------~~~~~I~~~n~--------------------------- 410 (533)
.++.|+++|++.. .++.+|+++|.
T Consensus 159 ~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~ 238 (376)
T 1um8_A 159 TRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE 238 (376)
T ss_dssp -----CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTT
T ss_pred ecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccc
Confidence 8999999999541 45678888762
Q ss_pred --------------CCCCChhhhccc-eeeeecCCCHHHHHHHhhc
Q psy4285 411 --------------LSKIPPAIQSRC-TRFRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 411 --------------~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~ 441 (533)
...+.|++.+|| ..+.|.+++.+++..++..
T Consensus 239 ~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 239 QEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp TTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred hhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhh
Confidence 113678899999 6899999999999888874
No 51
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.52 E-value=2.4e-14 Score=129.91 Aligned_cols=141 Identities=15% Similarity=0.208 Sum_probs=93.6
Q ss_pred hhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccc----cCcceEEecCCCC----Cchh----HHHHHHH
Q psy4285 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ----FNAMVLELNASDD----RGIG----IVRDQIF 359 (533)
Q Consensus 292 ~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~----~~~~~~~~~~~~~----~~~~----~~~~~~~ 359 (533)
.....+...+..+...+++|+||||||||++++++++.+.+... .+..++.++.... .... .+...+.
T Consensus 29 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (195)
T 1jbk_A 29 EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLN 108 (195)
T ss_dssp HHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHH
Confidence 33344444444455557999999999999999999998754211 1234444443221 1111 2222222
Q ss_pred HHHhcccCCCCCcEEEEEeCCCCCCHH--------HHHHHHHHHHhcCCCcEEEEEeCCCC-----CCChhhhccceeee
Q psy4285 360 QFASTKTMHKSSYKLIILDEADAMTND--------AQNALRRIIEKFTTNVRFCIICNYLS-----KIPPAIQSRCTRFR 426 (533)
Q Consensus 360 ~~~~~~~~~~~~~~vliiDE~d~l~~~--------~~~~Ll~~le~~~~~~~~I~~~n~~~-----~l~~~l~sR~~~i~ 426 (533)
.... ...+.+|+|||+|.+... .++.|...++. .++.+|++||... .+++++++||..+.
T Consensus 109 ~~~~-----~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~ 181 (195)
T 1jbk_A 109 DLAK-----QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQYIEKDAALERRFQKVF 181 (195)
T ss_dssp HHHH-----STTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEE
T ss_pred HHhh-----cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCCHHHHHHHHhcCHHHHHHhceee
Confidence 2221 135679999999999632 35667777764 4578899998765 78999999999999
Q ss_pred ecCCCHHHHHHHh
Q psy4285 427 FGPLDSSLIMSRL 439 (533)
Q Consensus 427 ~~~~~~~~~~~~l 439 (533)
+.+|+.++..+++
T Consensus 182 ~~~p~~~~~~~il 194 (195)
T 1jbk_A 182 VAEPSVEDTIAIL 194 (195)
T ss_dssp CCCCCHHHHHTTC
T ss_pred cCCCCHHHHHHHh
Confidence 9999999988765
No 52
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.51 E-value=6.5e-14 Score=147.46 Aligned_cols=128 Identities=22% Similarity=0.309 Sum_probs=88.5
Q ss_pred CCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHH-----------HHHHHHHHhcccCCCCCcEE
Q psy4285 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIV-----------RDQIFQFASTKTMHKSSYKL 374 (533)
Q Consensus 306 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~v 374 (533)
.++++|+||||||||++|++++..+ +..+..++.........+ ...+....... .....+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l------~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a---~~~~~v 178 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL------GRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKA---GKLNPV 178 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH------TCEEEEECCCC--------------------CHHHHHHTT---CSSSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHh---hccCCE
Confidence 3469999999999999999999998 445555555432211111 11111111111 123459
Q ss_pred EEEeCCCCCCHHH----HHHHHHHHHhcC---------------CCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHH
Q psy4285 375 IILDEADAMTNDA----QNALRRIIEKFT---------------TNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLI 435 (533)
Q Consensus 375 liiDE~d~l~~~~----~~~Ll~~le~~~---------------~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~ 435 (533)
++|||+|.+..+. ++.|++.|++.. .+++||+|||.+..++++|++||..+.|++|+.++.
T Consensus 179 l~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~ 258 (543)
T 3m6a_A 179 FLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEK 258 (543)
T ss_dssp EEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHH
T ss_pred EEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHH
Confidence 9999999998874 488888886432 567899999999999999999999999999999999
Q ss_pred HHHhhcC
Q psy4285 436 MSRLDYD 442 (533)
Q Consensus 436 ~~~l~~~ 442 (533)
..++...
T Consensus 259 ~~Il~~~ 265 (543)
T 3m6a_A 259 LEIVKDH 265 (543)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8888766
No 53
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.50 E-value=1.3e-13 Score=141.42 Aligned_cols=149 Identities=23% Similarity=0.246 Sum_probs=103.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
+++|+||||||||++|++++..+ +.+++.+++++.. +...++..+..... ..+++|||||+|
T Consensus 51 gvLL~GppGtGKT~Laraia~~~------~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~------~~p~ILfIDEid 118 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEA------NVPFFHISGSDFVELFVGVGAARVRDLFAQAKA------HAPCIVFIDEID 118 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHH------TCSEEEEEETGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHc------CCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHh------cCCCEEEEechh
Confidence 49999999999999999999987 5667777765432 12234443333221 356899999999
Q ss_pred CCCH--------------HHHHHHHHHHHh--cCCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcC
Q psy4285 382 AMTN--------------DAQNALRRIIEK--FTTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 382 ~l~~--------------~~~~~Ll~~le~--~~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~ 442 (533)
.+.. ..++.|+..|+. ...++.+|++||.++.+++++++ ||. .+.+.+|+.++..+++...
T Consensus 119 ~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~ 198 (476)
T 2ce7_A 119 AVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIH 198 (476)
T ss_dssp GTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH
T ss_pred hhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHH
Confidence 9843 245667777764 23568899999999999999987 885 7888999988888877543
Q ss_pred ------HH--HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy4285 443 ------DI--SFFNIIIWYIKIQEIKIEKGLALTDILTEISLL 477 (533)
Q Consensus 443 ------~~--~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~ 477 (533)
+. ++..+.. .+.|+++.|+...+.++
T Consensus 199 ~~~~~l~~~v~l~~la~---------~t~G~sgadL~~lv~~A 232 (476)
T 2ce7_A 199 TRNKPLAEDVNLEIIAK---------RTPGFVGADLENLVNEA 232 (476)
T ss_dssp HTTSCBCTTCCHHHHHH---------TCTTCCHHHHHHHHHHH
T ss_pred HHhCCCcchhhHHHHHH---------hcCCCcHHHHHHHHHHH
Confidence 11 1222211 45677777766655544
No 54
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.49 E-value=8.9e-14 Score=139.69 Aligned_cols=163 Identities=21% Similarity=0.246 Sum_probs=108.6
Q ss_pred CCCHHHHHHHHHHHhhhchhhhhhhccccc-------------cc--CCCceeEeCCCCCChHHHHHHHHHHHccccccC
Q psy4285 273 YPTKTEITNILRWLLNESMDLCYKINRFID-------------EN--ELPHLLFYGPPGTGKTTTILACARKLYTKAQFN 337 (533)
Q Consensus 273 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~-------------~~--~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~ 337 (533)
++.+..+...+.....|++.+...+...+. .. ...+++|+||||||||++|+++|+.+ +
T Consensus 3 ~~~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~------~ 76 (363)
T 3hws_A 3 LPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL------D 76 (363)
T ss_dssp CCCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT------T
T ss_pred CCCHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc------C
Confidence 345666666666666777777776665552 11 22459999999999999999999988 5
Q ss_pred cceEEecCCCCCchhHH----HHHHHHHHhcccC--CCCCcEEEEEeCCCCCCHH--------------HHHHHHHHHHh
Q psy4285 338 AMVLELNASDDRGIGIV----RDQIFQFASTKTM--HKSSYKLIILDEADAMTND--------------AQNALRRIIEK 397 (533)
Q Consensus 338 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~vliiDE~d~l~~~--------------~~~~Ll~~le~ 397 (533)
.+++.+++++....... ...+......... ....+++|||||+|.+... .++.|++.|+.
T Consensus 77 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg 156 (363)
T 3hws_A 77 VPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEG 156 (363)
T ss_dssp CCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHC
T ss_pred CCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcC
Confidence 67777776543221111 1111111111100 0124679999999988765 89999999982
Q ss_pred c---------------------CCCcEEEEEeCCC----------CC---------------------------------
Q psy4285 398 F---------------------TTNVRFCIICNYL----------SK--------------------------------- 413 (533)
Q Consensus 398 ~---------------------~~~~~~I~~~n~~----------~~--------------------------------- 413 (533)
. ..+..||+++|.. ..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~ 236 (363)
T 3hws_A 157 TVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIK 236 (363)
T ss_dssp C----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHH
T ss_pred ceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHH
Confidence 1 2445667776643 11
Q ss_pred --CChhhhcccee-eeecCCCHHHHHHHhhc
Q psy4285 414 --IPPAIQSRCTR-FRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 414 --l~~~l~sR~~~-i~~~~~~~~~~~~~l~~ 441 (533)
+.|++.+|+.. +.|.|++.+++.+++..
T Consensus 237 ~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 237 FGLIPEFIGRLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp HTCCHHHHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred cCCCHHHhcccCeeeecCCCCHHHHHHHHHH
Confidence 78999999964 55899999999888876
No 55
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.49 E-value=6.9e-14 Score=136.50 Aligned_cols=167 Identities=14% Similarity=0.152 Sum_probs=101.6
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCC------------CCCcEE
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH------------KSSYKL 374 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~v 374 (533)
.+++|+||||||||++|+++++..... +.+++.++++.... ..+...+ |......+ ....++
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~---~~~~v~v~~~~~~~-~l~~~~l--fg~~~g~~tg~~~~~~g~~~~a~~g~ 99 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARS---DRPLVTLNCAALNE-SLLESEL--FGHEKGAFTGADKRREGRFVEADGGT 99 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCS---SSCCCEEECSSCCH-HHHHHHH--TCCCSSCCC---CCCCCHHHHHTTSE
T ss_pred CcEEEECCCCchHHHHHHHHHHhCccc---CCCeEEEeCCCCCh-HHHHHHh--cCccccccCchhhhhcCHHHhcCCCE
Confidence 469999999999999999999875332 45677777765422 1111111 10000000 123469
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHH
Q psy4285 375 IILDEADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIM 436 (533)
Q Consensus 375 liiDE~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~ 436 (533)
|||||++.++.+.+..|++.+++. +.++++|++||.. ..+.+.|.+|+..+.+.-|+
T Consensus 100 L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPp----- 174 (304)
T 1ojl_A 100 LFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPS----- 174 (304)
T ss_dssp EEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCC-----
T ss_pred EEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccC-----
Confidence 999999999999999999999864 3568999999975 35788999998655544444
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHH
Q psy4285 437 SRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488 (533)
Q Consensus 437 ~~l~~~~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~ 488 (533)
+...++|+..++..+- .......+.....+.......+..+.||++++
T Consensus 175 --L~eR~edi~~l~~~~l--~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvR 222 (304)
T 1ojl_A 175 --LRQRREDIPLLADHFL--RRFAERNRKVVKGFTPQAMDLLIHYDWPGNIR 222 (304)
T ss_dssp --SGGGGGGHHHHHHHHH--HHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHH
T ss_pred --HHHhHhhHHHHHHHHH--HHHHHHhccCccCCCHHHHHHHHcCCCCCCHH
Confidence 1111222333333211 11111222222223345566667778888876
No 56
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.48 E-value=2.5e-13 Score=130.24 Aligned_cols=169 Identities=15% Similarity=0.113 Sum_probs=101.7
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHH-H----HHHhc----ccCC-CCCcEEEE
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI-F----QFAST----KTMH-KSSYKLII 376 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~----~~~~-~~~~~vli 376 (533)
.+++|+||||||||++|+++++.+... +.+++.++++.... ..+...+ + .+... .... ....++||
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~---~~~~~~v~~~~~~~-~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~ 105 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRW---QGPFISLNCAALNE-NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLF 105 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTT---TSCEEEEEGGGSCH-HHHHHHHHCCC---------CCCCHHHHTTTSEEE
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCcc---CCCeEEEecCCCCh-hHHHHHhcCCcccccccccccccchhhhcCCcEEE
Confidence 469999999999999999999876332 35677787765422 2221111 0 00000 0000 12457999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHHH
Q psy4285 377 LDEADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMSR 438 (533)
Q Consensus 377 iDE~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~~ 438 (533)
|||++.++.+.++.|++++++. +.++++|++||.. ..+.+++.+||..+.+.-|+
T Consensus 106 lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~------- 178 (265)
T 2bjv_A 106 LDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPP------- 178 (265)
T ss_dssp EESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCC-------
T ss_pred EechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCC-------
Confidence 9999999999999999999863 3568999999975 25789999999654444333
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhcCCChhHH
Q psy4285 439 LDYDDISFFNIIIWYIKIQEIKIEKGLAL-TDILTEISLLVHRLEIPESML 488 (533)
Q Consensus 439 l~~~~~~~~~ll~~~~~l~~l~~~~~~~~-~di~~~~~~~~~~~~~~~~~~ 488 (533)
+....+++..+++.+ +.......+... ..+-....+.+..+.|+++++
T Consensus 179 L~~R~~di~~l~~~~--l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~r 227 (265)
T 2bjv_A 179 LRERESDIMLMAEYF--AIQMCREIKLPLFPGFTERARETLLNYRWPGNIR 227 (265)
T ss_dssp GGGCHHHHHHHHHHH--HHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHH
T ss_pred hhhhhHHHHHHHHHH--HHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHH
Confidence 112222333333321 111112223211 122344556666778998876
No 57
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.48 E-value=6.4e-14 Score=121.19 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=81.5
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHH
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 386 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~ 386 (533)
.+++|+||||||||++|+++++..... +.+++ ++++...........+.. ...++|||||+|.++.+
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~~---~~~~v-~~~~~~~~~~~~~~~~~~---------a~~g~l~ldei~~l~~~ 91 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRNA---QGEFV-YRELTPDNAPQLNDFIAL---------AQGGTLVLSHPEHLTRE 91 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTTT---TSCCE-EEECCTTTSSCHHHHHHH---------HTTSCEEEECGGGSCHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCcc---CCCEE-EECCCCCcchhhhcHHHH---------cCCcEEEEcChHHCCHH
Confidence 469999999999999999999865332 34555 666554333223332221 13369999999999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeCCC-------CCCChhhhccce--eeeecCC
Q psy4285 387 AQNALRRIIEKFTTNVRFCIICNYL-------SKIPPAIQSRCT--RFRFGPL 430 (533)
Q Consensus 387 ~~~~Ll~~le~~~~~~~~I~~~n~~-------~~l~~~l~sR~~--~i~~~~~ 430 (533)
.|..|++.|+..+.++++|++||.. ..+.+.+..|+. .+.++|+
T Consensus 92 ~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 92 QQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp HHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEeCCCC
Confidence 9999999998888889999999965 357788888875 4555543
No 58
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.48 E-value=4.7e-15 Score=142.58 Aligned_cols=123 Identities=25% Similarity=0.276 Sum_probs=85.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC------chhHHHHHHHHHHhcccCCCCCcEEEEEeCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR------GIGIVRDQIFQFASTKTMHKSSYKLIILDEAD 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d 381 (533)
+++|+||||||||++|+++++.+ +.+++.+++++.. +...++..+..... ..+++|||||+|
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~------~~~~vl~iDEid 113 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEA------HVPFFSMGGSSFIEMFVGLGASRVRDLFETAKK------QAPSIIFIDEID 113 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHH------TCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHH------SCSCEEEESCGG
T ss_pred eEEEECCCCCcHHHHHHHHHHHh------CCCEEEechHHHHHhhcchHHHHHHHHHHHHHh------cCCeEEEEeChh
Confidence 59999999999999999999987 3344445543321 11112222222211 245799999999
Q ss_pred CCCHHH---------------HHHHHHHHHhcC---CCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhh
Q psy4285 382 AMTNDA---------------QNALRRIIEKFT---TNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLD 440 (533)
Q Consensus 382 ~l~~~~---------------~~~Ll~~le~~~---~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~ 440 (533)
.+.... ++.|+..++... ..+.+|++||.+..+++++++ || ..+.|.+|+.++..+++.
T Consensus 114 ~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~ 193 (268)
T 2r62_A 114 AIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILK 193 (268)
T ss_dssp GTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHH
T ss_pred hhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHH
Confidence 996542 345666665432 347889999999999999999 77 578999999998888876
Q ss_pred cC
Q psy4285 441 YD 442 (533)
Q Consensus 441 ~~ 442 (533)
..
T Consensus 194 ~~ 195 (268)
T 2r62_A 194 VH 195 (268)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 59
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.47 E-value=4.8e-14 Score=139.89 Aligned_cols=144 Identities=17% Similarity=0.132 Sum_probs=96.9
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhc--c
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST--K 365 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 365 (533)
.|++.....+...+..+ .+++|+||||||||++|+++++.+ +..+..++......... .++..... .
T Consensus 30 ~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~------~~~~~~i~~~~~~~~~~---l~g~~~~~~~~ 98 (331)
T 2r44_A 30 VGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM------DLDFHRIQFTPDLLPSD---LIGTMIYNQHK 98 (331)
T ss_dssp CSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT------TCCEEEEECCTTCCHHH---HHEEEEEETTT
T ss_pred eCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh------CCCeEEEecCCCCChhh---cCCceeecCCC
Confidence 34555555554444443 379999999999999999999987 33445555432211111 11000000 0
Q ss_pred ---cCC--CCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCCC-----CCChhhhccce-
Q psy4285 366 ---TMH--KSSYKLIILDEADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNYLS-----KIPPAIQSRCT- 423 (533)
Q Consensus 366 ---~~~--~~~~~vliiDE~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~~-----~l~~~l~sR~~- 423 (533)
... .-..++++|||++.++...++.|++.+++. +..+.+|.|+|... .+++++++||.
T Consensus 99 ~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~ 178 (331)
T 2r44_A 99 GNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMM 178 (331)
T ss_dssp TEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSE
T ss_pred CceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeE
Confidence 000 011369999999999999999999999863 44567777777443 38999999997
Q ss_pred eeeecCCCHHHHHHHhhcC
Q psy4285 424 RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 424 ~i~~~~~~~~~~~~~l~~~ 442 (533)
.+.+.+|+.++..+++.+.
T Consensus 179 ~i~i~~p~~~~~~~il~~~ 197 (331)
T 2r44_A 179 KIHLTYLDKESELEVMRRV 197 (331)
T ss_dssp EEECCCCCHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHhc
Confidence 5999999999999888653
No 60
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.46 E-value=2.5e-13 Score=128.03 Aligned_cols=138 Identities=14% Similarity=0.237 Sum_probs=94.2
Q ss_pred hhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCC
Q psy4285 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSS 371 (533)
Q Consensus 292 ~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (533)
.....+..+......++++|+||||||||++++++++.+... +..+..++..+.... +.+.+. . ...
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~----~----~~~ 104 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL---ERRSFYIPLGIHASI--STALLE----G----LEQ 104 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEGGGGGGS--CGGGGT----T----GGG
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHH--HHHHHH----h----ccC
Confidence 344455555554444579999999999999999999988544 334555554432111 000000 0 134
Q ss_pred cEEEEEeCCCCCCHHH--HHHHHHHHHhcCC--CcEEEEEeCCCC----CCChhhhccc---eeeeecCCCHHHHHHHhh
Q psy4285 372 YKLIILDEADAMTNDA--QNALRRIIEKFTT--NVRFCIICNYLS----KIPPAIQSRC---TRFRFGPLDSSLIMSRLD 440 (533)
Q Consensus 372 ~~vliiDE~d~l~~~~--~~~Ll~~le~~~~--~~~~I~~~n~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~l~ 440 (533)
+.+|||||++.+.... ++.|+..++.... ...+|++||... .+++++.+|| ..+.|.+|+.++..+++.
T Consensus 105 ~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~ 184 (242)
T 3bos_A 105 FDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQ 184 (242)
T ss_dssp SSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHH
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHH
Confidence 6799999999997655 7888888775432 235888887544 4569999999 899999999998888776
Q ss_pred cC
Q psy4285 441 YD 442 (533)
Q Consensus 441 ~~ 442 (533)
..
T Consensus 185 ~~ 186 (242)
T 3bos_A 185 RR 186 (242)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 61
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.46 E-value=1.6e-13 Score=132.19 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=81.4
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC-Cc--h----hHHHHHHHHHHhcccCCCCCcEEEEEeC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD-RG--I----GIVRDQIFQFASTKTMHKSSYKLIILDE 379 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-~~--~----~~~~~~~~~~~~~~~~~~~~~~vliiDE 379 (533)
.+++|+||||||||++|+++++.+ +..++.+++++. .+ . ..++..+.... ...+++|||||
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~------~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~------~~~~~vl~iDE 132 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEES------NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAY------KSQLSCVVVDD 132 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH------TCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHH------TSSEEEEEECC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh------CCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHH------hcCCcEEEEEC
Confidence 459999999999999999999986 556666665431 11 1 12223222221 13578999999
Q ss_pred CCCC----------CHHHHHHHHHHHHh---cCCCcEEEEEeCCCCCCCh-hhhccc-eeeeecCCCH-HHHHHHh
Q psy4285 380 ADAM----------TNDAQNALRRIIEK---FTTNVRFCIICNYLSKIPP-AIQSRC-TRFRFGPLDS-SLIMSRL 439 (533)
Q Consensus 380 ~d~l----------~~~~~~~Ll~~le~---~~~~~~~I~~~n~~~~l~~-~l~sR~-~~i~~~~~~~-~~~~~~l 439 (533)
+|.+ .....+.|...++. ....+.+|++||.+..+++ .+.+|| ..+.+++++. +++..++
T Consensus 133 id~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~ 208 (272)
T 1d2n_A 133 IERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEAL 208 (272)
T ss_dssp HHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHH
T ss_pred hhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHH
Confidence 9987 34455666666653 3345678888998877777 688897 6778877776 4444443
No 62
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.46 E-value=6.4e-14 Score=138.54 Aligned_cols=162 Identities=14% Similarity=0.246 Sum_probs=119.1
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHH-------HHHHHHHHHhhcCCCCCH-HHHHHHHHhcCCCH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSL-------IMSRLDYVIEQEKVNVTP-DGKKAIIDLSDGDM 72 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~g~~ 72 (533)
||+|+.+++||++||++.++.|+|+|||.+++|++|+.++ +..++.+++.++++.+++ ++++.++..++||+
T Consensus 130 le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~ 209 (324)
T 3u61_B 130 MEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDF 209 (324)
T ss_dssp HHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCT
T ss_pred HHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCH
Confidence 4678889999999999999999999999999999999887 566777778889999988 99999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcchhhHHhhhhh--hcccc-------ch----hHHHHHhc-hHHHHhhc------CCChhhHH
Q psy4285 73 RKVLNILQSAATAHADEVNEDTIFTLLVS--RVEKY-------RP----STLDELVS-HQDIISTI------EIPESMLV 132 (533)
Q Consensus 73 r~a~~~l~~~~~~~~~~i~~~~i~~~~~~--~~ek~-------~~----~~l~~lls-~~~~l~~l------~~~~~~~~ 132 (533)
|.|+|.|+.++ ....|+.+.+.+++.. .+..+ .. ..+++++. ...++..+ ........
T Consensus 210 R~a~~~L~~~~--~~~~i~~~~v~~~~~~~~~i~~~~~~~~~~~~~~a~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~l~ 287 (324)
T 3u61_B 210 RKTIGELDSYS--SKGVLDAGILSLVTNDRGAIDDVLESLKNKDVKQLRALAPKYAADYSWFVGKLAEEIYSRVTPQSII 287 (324)
T ss_dssp THHHHHHHHHG--GGTCBCC------------CHHHHHHHHTTCHHHHHHHHHHHSSCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHh--ccCCCCHHHHHHHhCCHHHHHHHHHHHHcCCHHHHHHHHHHhccCHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999988 3345777766544332 11100 11 12333332 11222211 24555667
Q ss_pred HHHhhccCccccccCCCChhhHHHHHHHHHhc
Q psy4285 133 DLVLKMSDIEYRLAAGTSEKIQLSALIAAFNS 164 (533)
Q Consensus 133 ~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~ 164 (533)
.+...+++.++++..|.++..++++|++.+++
T Consensus 288 ~i~~~l~~~d~~l~~g~~~~~~le~~~~~~~~ 319 (324)
T 3u61_B 288 RMYEIVGENNQYHGIAANTELHLAYLFIQLAC 319 (324)
T ss_dssp HHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 78888899999999999999999999999985
No 63
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.45 E-value=3.3e-12 Score=129.23 Aligned_cols=139 Identities=22% Similarity=0.265 Sum_probs=95.0
Q ss_pred ccCCCceeEeCCCCCChHHHHHHHHHHHcccc---ccCcceEEecCCCCCchhH-H------------------HHHHHH
Q psy4285 303 ENELPHLLFYGPPGTGKTTTILACARKLYTKA---QFNAMVLELNASDDRGIGI-V------------------RDQIFQ 360 (533)
Q Consensus 303 ~~~~~~~ll~GppGtGKT~la~~la~~l~~~~---~~~~~~~~~~~~~~~~~~~-~------------------~~~~~~ 360 (533)
.+..++++|+||||||||++++.+++.+.... ..+..++.+++........ + .+....
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 120 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYER 120 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 34455699999999999999999999874321 1134567777654332211 1 111111
Q ss_pred HHhcccCCCCCcEEEEEeCCCCCCHH--HHHHHHHHHHhc-----CCCcEEEEEeCCC---CCCChhhhccc--eeeeec
Q psy4285 361 FASTKTMHKSSYKLIILDEADAMTND--AQNALRRIIEKF-----TTNVRFCIICNYL---SKIPPAIQSRC--TRFRFG 428 (533)
Q Consensus 361 ~~~~~~~~~~~~~vliiDE~d~l~~~--~~~~Ll~~le~~-----~~~~~~I~~~n~~---~~l~~~l~sR~--~~i~~~ 428 (533)
+..... ....+.+|||||+|.+... .++.|..+++.. +.++.+|++||.. ..+++++.+|| ..+.|+
T Consensus 121 l~~~l~-~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~ 199 (387)
T 2v1u_A 121 LVKRLS-RLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFP 199 (387)
T ss_dssp HHHHHT-TSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBC
T ss_pred HHHHHh-ccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeC
Confidence 111110 1234779999999999776 677777777643 5578899999877 67899999999 689999
Q ss_pred CCCHHHHHHHhhcC
Q psy4285 429 PLDSSLIMSRLDYD 442 (533)
Q Consensus 429 ~~~~~~~~~~l~~~ 442 (533)
+++.+++.+++.+.
T Consensus 200 ~l~~~~~~~il~~~ 213 (387)
T 2v1u_A 200 PYTAPQLRDILETR 213 (387)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999888754
No 64
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.44 E-value=5.5e-12 Score=124.94 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=90.9
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHH
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 386 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~ 386 (533)
.+++|+||||+||||++++++..+. ..+...+++.......+...... . ...+|++|||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~------~~~~~~sg~~~~~~~~l~~~~~~---~-----~~~~v~~iDE~~~l~~~ 117 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ------TNIHVTSGPVLVKQGDMAAILTS---L-----ERGDVLFIDEIHRLNKA 117 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT------CCEEEEETTTCCSHHHHHHHHHH---C-----CTTCEEEEETGGGCCHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEechHhcCHHHHHHHHHH---c-----cCCCEEEEcchhhcCHH
Confidence 5699999999999999999999883 33333444333333333322211 1 24579999999999998
Q ss_pred HHHHHHHHHHhcC------------------CCcEEEEEeCCCCCCChhhhccce-eeeecCCCHHHHHHHhhcC
Q psy4285 387 AQNALRRIIEKFT------------------TNVRFCIICNYLSKIPPAIQSRCT-RFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 387 ~~~~Ll~~le~~~------------------~~~~~I~~~n~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~ 442 (533)
.++.|+..++.+. ..+.++.+++.+..+++++++||. ...|.+++.+++.+++.+.
T Consensus 118 ~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~ 192 (334)
T 1in4_A 118 VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRA 192 (334)
T ss_dssp HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 8888888876532 135677788889999999999995 6889999999999999875
No 65
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.43 E-value=2e-12 Score=127.33 Aligned_cols=163 Identities=37% Similarity=0.644 Sum_probs=128.9
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+|+.+++||++||.+.++.|+|+|||+.++|++++.+++.++|.+++.++++.+++++++.++..++||+|.+++.++
T Consensus 126 le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 126 MEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp TSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhhcc-----------ccch----hHHHHHhc-----hHHHH-------hhcCCChhhHHH
Q psy4285 81 SAATAHADEVNEDTIFTLLVSRVE-----------KYRP----STLDELVS-----HQDII-------STIEIPESMLVD 133 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~~e-----------k~~~----~~l~~lls-----~~~~l-------~~l~~~~~~~~~ 133 (533)
.++.. ...|+.+.+.++++.... .-.. ..+.+++. ..+++ ..++++...+..
T Consensus 206 ~~~~~-~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l~~~~~~l~~ 284 (319)
T 2chq_A 206 GAAAI-GEVVDADTIYQITATARPEEMTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQ 284 (319)
T ss_dssp HHHHS-SSCBCHHHHHHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCSCTTHHHH
T ss_pred HHHHc-CCCCCHHHHHHHHCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHH
Confidence 98874 446888776654432110 0000 11223321 11222 122466667777
Q ss_pred HHhhccCccccccCCCChhhHHHHHHHHHhc
Q psy4285 134 LVLKMSDIEYRLAAGTSEKIQLSALIAAFNS 164 (533)
Q Consensus 134 ~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~ 164 (533)
.+..+++++.++..|.+...+++.++..++.
T Consensus 285 ~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~ 315 (319)
T 2chq_A 285 LIDKLGEVDFRLTEGANERIQLDAYLAYLST 315 (319)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8888899999999999999999999998864
No 66
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.41 E-value=1.7e-13 Score=123.59 Aligned_cols=135 Identities=15% Similarity=0.191 Sum_probs=87.3
Q ss_pred chhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccc----cCcceEEecCCCC----Cchh----HHHHH
Q psy4285 290 SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ----FNAMVLELNASDD----RGIG----IVRDQ 357 (533)
Q Consensus 290 ~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~----~~~~~~~~~~~~~----~~~~----~~~~~ 357 (533)
++.....+...+......+++|+||||||||++|+++++.+..... .+..++.++.... .... .+...
T Consensus 27 ~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (187)
T 2p65_A 27 RDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSI 106 (187)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHH
Confidence 3334444444444455567999999999999999999998744210 1234444443211 0111 12222
Q ss_pred HHHHHhcccCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHHHhcCCCcEEEEEeCCCC-----CCChhhhccce
Q psy4285 358 IFQFASTKTMHKSSYKLIILDEADAMT---------NDAQNALRRIIEKFTTNVRFCIICNYLS-----KIPPAIQSRCT 423 (533)
Q Consensus 358 ~~~~~~~~~~~~~~~~vliiDE~d~l~---------~~~~~~Ll~~le~~~~~~~~I~~~n~~~-----~l~~~l~sR~~ 423 (533)
+...... ..+.+|||||++.+. .+..+.|...+++ ..+.+|+++|... .+++++++||.
T Consensus 107 ~~~~~~~-----~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~ii~~~~~~~~~~~~~~~~~l~~R~~ 179 (187)
T 2p65_A 107 LKEVQDA-----EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRCIGATTVSEYRQFIEKDKALERRFQ 179 (187)
T ss_dssp HHHHHHT-----TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCEEEEECHHHHHHHTTTCHHHHHHEE
T ss_pred HHHHHhc-----CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeEEEecCHHHHHHHHhccHHHHHhcC
Confidence 2222211 346799999999986 4556677777764 5588999998664 68999999999
Q ss_pred eeeecCCC
Q psy4285 424 RFRFGPLD 431 (533)
Q Consensus 424 ~i~~~~~~ 431 (533)
.+.+.+|+
T Consensus 180 ~i~i~~p~ 187 (187)
T 2p65_A 180 QILVEQPS 187 (187)
T ss_dssp EEECCSCC
T ss_pred cccCCCCC
Confidence 88888774
No 67
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.40 E-value=1.2e-13 Score=119.11 Aligned_cols=107 Identities=13% Similarity=0.163 Sum_probs=76.1
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHH
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 386 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~ 386 (533)
.+++|+||||||||++|+++++.. . .++.+++++... ......+. . ...++|||||+|.++.+
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~------~-~~~~~~~~~~~~-~~~~~~~~---~------a~~~~l~lDei~~l~~~ 90 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNG------T-PWVSPARVEYLI-DMPMELLQ---K------AEGGVLYVGDIAQYSRN 90 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTT------S-CEECCSSTTHHH-HCHHHHHH---H------TTTSEEEEEECTTCCHH
T ss_pred CcEEEECCCCccHHHHHHHHHHhC------C-CeEEechhhCCh-HhhhhHHH---h------CCCCeEEEeChHHCCHH
Confidence 469999999999999999998765 2 677777765321 11222211 1 23469999999999999
Q ss_pred HHHHHHHHHHhc-CCCcEEEEEeCCCC-C----CChhhhcccee--eeecCC
Q psy4285 387 AQNALRRIIEKF-TTNVRFCIICNYLS-K----IPPAIQSRCTR--FRFGPL 430 (533)
Q Consensus 387 ~~~~Ll~~le~~-~~~~~~I~~~n~~~-~----l~~~l~sR~~~--i~~~~~ 430 (533)
.+..|++.+++. +.++++|++||... . +.+.+..|+.. +.++|+
T Consensus 91 ~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 91 IQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp HHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEECCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeCCCC
Confidence 999999999875 46789999998542 2 44566777643 444443
No 68
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.40 E-value=2.4e-12 Score=123.48 Aligned_cols=156 Identities=21% Similarity=0.175 Sum_probs=102.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCch--hHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI--GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 385 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~ 385 (533)
+++|+|||||||||++++++..+ +..++.+++.+.... ......+....+... ...+.++++||+|.+..
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~------~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~--~~~p~i~~~Deid~~~~ 117 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANES------GLNFISVKGPELLNMYVGESERAVRQVFQRAK--NSAPCVIFFDEVDALCP 117 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHT------TCEEEEEETTTTCSSTTHHHHHHHHHHHHHHH--HTCSEEEEEETCTTTCC
T ss_pred eEEEECCCCCcHHHHHHHHHHHc------CCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHH--hcCCCeEeeehhhhhhc
Confidence 39999999999999999999986 445777777654321 222222332222210 12467999999998742
Q ss_pred -----------HHHHHHHHHHHhc--CCCcEEEEEeCCCCCCChhhhc--cce-eeeecCCCHHHHHHHhhcC-------
Q psy4285 386 -----------DAQNALRRIIEKF--TTNVRFCIICNYLSKIPPAIQS--RCT-RFRFGPLDSSLIMSRLDYD------- 442 (533)
Q Consensus 386 -----------~~~~~Ll~~le~~--~~~~~~I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~------- 442 (533)
...+.++..|+.. ...+.++.++|.+..+|+++++ ||. .+.++.|+.++..+++...
T Consensus 118 ~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~ 197 (274)
T 2x8a_A 118 RRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKP 197 (274)
T ss_dssp ---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTT
T ss_pred ccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCC
Confidence 1235566666532 2446677889999999999998 994 7788888888888887654
Q ss_pred ----HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy4285 443 ----DISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLV 478 (533)
Q Consensus 443 ----~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~ 478 (533)
..++..+.. ...+.||++.|+..-+.++.
T Consensus 198 ~~~~~~~~~~la~-------~~~~~g~sgadl~~l~~~a~ 230 (274)
T 2x8a_A 198 PLDADVNLEAIAG-------DLRCDCYTGADLSALVREAS 230 (274)
T ss_dssp BBCTTCCHHHHHT-------CSGGGSCCHHHHHHHHHHHH
T ss_pred CCccccCHHHHHH-------hhccCCcCHHHHHHHHHHHH
Confidence 011222211 11245999999987665554
No 69
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=1.2e-12 Score=130.81 Aligned_cols=163 Identities=26% Similarity=0.490 Sum_probs=127.0
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+++.+++||++||++..++|+++|||..+.|++++.+++..+|.+++.++++.+++++++.++..++||+|.+++.++
T Consensus 157 le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~ 236 (353)
T 1sxj_D 157 METYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQ 236 (353)
T ss_dssp HHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCC-----CcchhhHHhhhhhhcccc-----------chh----HHHHHhc----hHHHHh--------hcCCCh
Q psy4285 81 SAATAHAD-----EVNEDTIFTLLVSRVEKY-----------RPS----TLDELVS----HQDIIS--------TIEIPE 128 (533)
Q Consensus 81 ~~~~~~~~-----~i~~~~i~~~~~~~~ek~-----------~~~----~l~~lls----~~~~l~--------~l~~~~ 128 (533)
.++..... .|+.+.|.++++...... .+. .+.+++. ...++. .-+++.
T Consensus 237 ~~~~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~ 316 (353)
T 1sxj_D 237 SASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDT 316 (353)
T ss_dssp HTHHHHHHHCSCCCCCHHHHHHHHTCCCSHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCSSSCH
T ss_pred HHHHhcCCCccCccccHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCH
Confidence 88654321 588888766544211100 011 1222211 111111 114556
Q ss_pred hhHHHHHhhccCccccccCCCChhhHHHHHHHHHh
Q psy4285 129 SMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163 (533)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~ 163 (533)
..+..++..++++++++..|.++..+++.++..++
T Consensus 317 ~~~~~~~~~l~~~~~~l~~g~~~~l~l~~~~~~~~ 351 (353)
T 1sxj_D 317 NFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKIS 351 (353)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 66777888889999999999999999999999875
No 70
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.39 E-value=2.8e-12 Score=132.74 Aligned_cols=143 Identities=13% Similarity=0.138 Sum_probs=95.2
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccc----cCcceEEecCCC-CC--chhHHHHHHHH
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ----FNAMVLELNASD-DR--GIGIVRDQIFQ 360 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~----~~~~~~~~~~~~-~~--~~~~~~~~~~~ 360 (533)
.|++..+..+...+.....+|++|+||||||||++|+++++.+.+... .+..++.++++. .. ....++..+..
T Consensus 183 iGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~~~~~~ 262 (468)
T 3pxg_A 183 IGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDE 262 (468)
T ss_dssp CCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHH
T ss_pred cCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHHHHHHH
Confidence 345555555556665566678999999999999999999999854321 144566666541 11 12234444443
Q ss_pred HHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCC-----CCChhhhccceeeeecCCCHHHH
Q psy4285 361 FASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS-----KIPPAIQSRCTRFRFGPLDSSLI 435 (533)
Q Consensus 361 ~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~-----~l~~~l~sR~~~i~~~~~~~~~~ 435 (533)
... .++.||||| ...+.++.|+..|++ ..+++|++||... .+++++++||..+.|.+|+.++.
T Consensus 263 ~~~------~~~~iLfiD----~~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~ 330 (468)
T 3pxg_A 263 IRQ------AGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDES 330 (468)
T ss_dssp HHT------CCCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHH
T ss_pred HHh------cCCeEEEEe----CchhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHH
Confidence 322 245799999 455677888888874 4689999999886 68999999999999999999999
Q ss_pred HHHhhcC
Q psy4285 436 MSRLDYD 442 (533)
Q Consensus 436 ~~~l~~~ 442 (533)
..++..+
T Consensus 331 ~~iL~~~ 337 (468)
T 3pxg_A 331 IQILQGL 337 (468)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9999865
No 71
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.39 E-value=4.3e-12 Score=126.74 Aligned_cols=71 Identities=8% Similarity=0.051 Sum_probs=57.7
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhc-------------CCCcEEEEEeCCCC-CCChhhhcccee-eeecCCCHH-H
Q psy4285 371 SYKLIILDEADAMTNDAQNALRRIIEKF-------------TTNVRFCIICNYLS-KIPPAIQSRCTR-FRFGPLDSS-L 434 (533)
Q Consensus 371 ~~~vliiDE~d~l~~~~~~~Ll~~le~~-------------~~~~~~I~~~n~~~-~l~~~l~sR~~~-i~~~~~~~~-~ 434 (533)
..++|||||++.++.+.++.|++.+++. +.++.+|+++|... .+++++++||.. +.+.+|+.. +
T Consensus 144 ~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~ 223 (350)
T 1g8p_A 144 NRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVET 223 (350)
T ss_dssp TTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHH
T ss_pred CCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHH
Confidence 3679999999999999999999999863 24678888999754 899999999965 899988544 4
Q ss_pred HHHHhhc
Q psy4285 435 IMSRLDY 441 (533)
Q Consensus 435 ~~~~l~~ 441 (533)
..+++.+
T Consensus 224 ~~~il~~ 230 (350)
T 1g8p_A 224 RVEVIRR 230 (350)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4466655
No 72
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.37 E-value=7.3e-13 Score=135.96 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=91.3
Q ss_pred CCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHH-----HHHhcccCCCCCcEEEEEeCC
Q psy4285 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF-----QFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 306 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~vliiDE~ 380 (533)
.++++|+|||||||||+++++++.+.... .+..++.+++.+.. ..+...+. .+... ....+++|||||+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~-~~~~v~~v~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~vL~IDEi 203 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSEKFL--NDLVDSMKEGKLNEFREK---YRKKVDILLIDDV 203 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC-CSSCEEEEEHHHHH--HHHHHHHHTTCHHHHHHH---HTTTCSEEEEECG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHHHHH--HHHHHHHHcccHHHHHHH---hcCCCCEEEEeCc
Confidence 44699999999999999999999875432 13455566554321 11111111 11111 0115679999999
Q ss_pred CCCCH--HHHHHHHHHHHhc-CCCcEEEEEeCCCC----CCChhhhccc---eeeeecCCCHHHHHHHhhcC
Q psy4285 381 DAMTN--DAQNALRRIIEKF-TTNVRFCIICNYLS----KIPPAIQSRC---TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 381 d~l~~--~~~~~Ll~~le~~-~~~~~~I~~~n~~~----~l~~~l~sR~---~~i~~~~~~~~~~~~~l~~~ 442 (533)
+.+.. ..++.|+..++.. ..+..+|++|+.+. .++++++||| ..+.+.+|+.++...++.+.
T Consensus 204 ~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~ 275 (440)
T 2z4s_A 204 QFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKM 275 (440)
T ss_dssp GGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 99976 6788899988763 34567888887643 3889999999 58999999999999888764
No 73
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.37 E-value=2e-12 Score=130.97 Aligned_cols=133 Identities=20% Similarity=0.254 Sum_probs=96.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCch-hHHHHHHHHHHhcccC-----------------CC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI-GIVRDQIFQFASTKTM-----------------HK 369 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------------~~ 369 (533)
+++|+||||||||++++++++.+.... +..++.+++...... ..+......+....+. ..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 123 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKT--TARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRER 123 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSC--CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhc--CeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhc
Confidence 699999999999999999999885432 345666775543322 1222211111000000 01
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhcC----CCcEEEEEeCCC---CCCChhhhccce--eeeecCCCHHHHHHHhh
Q psy4285 370 SSYKLIILDEADAMTNDAQNALRRIIEKFT----TNVRFCIICNYL---SKIPPAIQSRCT--RFRFGPLDSSLIMSRLD 440 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~~~~~Ll~~le~~~----~~~~~I~~~n~~---~~l~~~l~sR~~--~i~~~~~~~~~~~~~l~ 440 (533)
.++.+|+|||++.++...++.|++++++.+ .++.+|++||.+ ..+++.+.+||. .+.|+|++.+++.+++.
T Consensus 124 ~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~ 203 (389)
T 1fnn_A 124 DLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILL 203 (389)
T ss_dssp TCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHH
T ss_pred CCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHH
Confidence 346799999999999999999999987643 478999999987 678999999996 69999999999998886
Q ss_pred cC
Q psy4285 441 YD 442 (533)
Q Consensus 441 ~~ 442 (533)
+.
T Consensus 204 ~~ 205 (389)
T 1fnn_A 204 DR 205 (389)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 74
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.37 E-value=1.1e-12 Score=129.56 Aligned_cols=127 Identities=17% Similarity=0.238 Sum_probs=87.9
Q ss_pred CCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHH-----HHHHhcccCCCCCcEEEEEeCC
Q psy4285 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI-----FQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 306 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~vliiDE~ 380 (533)
.++++|+|||||||||+++++++.+... +..++.+++.+.. ..+...+ ..+.... ..+++|||||+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~vL~iDEi 107 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFA--QAMVEHLKKGTINEFRNMY----KSVDLLLLDDV 107 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHH--HHHHHHHHHTCHHHHHHHH----HTCSEEEEECG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHHH--HHHHHHHHcCcHHHHHHHh----cCCCEEEEcCc
Confidence 3469999999999999999999987543 3456666654321 1111111 1111110 13579999999
Q ss_pred CCCCH--HHHHHHHHHHHhc-CCCcEEEEEeCCC-C---CCChhhhccc---eeeeecCCCHHHHHHHhhcC
Q psy4285 381 DAMTN--DAQNALRRIIEKF-TTNVRFCIICNYL-S---KIPPAIQSRC---TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 381 d~l~~--~~~~~Ll~~le~~-~~~~~~I~~~n~~-~---~l~~~l~sR~---~~i~~~~~~~~~~~~~l~~~ 442 (533)
+.+.. ..++.++..++.. ..+..+|++++.+ . .+++++.+|| ..+.++| +.++...++...
T Consensus 108 ~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~ 178 (324)
T 1l8q_A 108 QFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEK 178 (324)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHH
Confidence 99976 6778888887653 2445677777644 2 5899999999 6789999 999998888765
No 75
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.34 E-value=3.7e-12 Score=131.42 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=101.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCc--hhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG--IGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 385 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~ 385 (533)
+++|+||||||||+++++++..+ +..++.+++++... .......+....+... ...++++||||+|.+..
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~------~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~--~~~p~il~IDEId~l~~ 137 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEA------RVPFITASGSDFVEMFVGVGAARVRDLFETAK--RHAPCIVFIDEIDAVGR 137 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT------TCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSS--SSSSCEEEEECGGGTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHh------CCCEEEEehhHHHHhhhhhHHHHHHHHHHHHH--hcCCCEEEEehHHHHHH
Confidence 49999999999999999999987 45677777655322 1222222333222221 12468999999998742
Q ss_pred --------------HHHHHHHHHHHhc--CCCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhhcC----
Q psy4285 386 --------------DAQNALRRIIEKF--TTNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLDYD---- 442 (533)
Q Consensus 386 --------------~~~~~Ll~~le~~--~~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~~---- 442 (533)
...+.|+..|+.. ...+.++.+||.+..+|+++++ || ..+.+..|+.++..+++...
T Consensus 138 ~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~ 217 (499)
T 2dhr_A 138 KRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK 217 (499)
T ss_dssp CSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS
T ss_pred hhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC
Confidence 2234555555532 3456788888999999999998 66 47889999999888888654
Q ss_pred --HH--HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy4285 443 --DI--SFFNIIIWYIKIQEIKIEKGLALTDILTEISLLV 478 (533)
Q Consensus 443 --~~--~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~ 478 (533)
+. ++..+.. .+.|+++.|+...+.++.
T Consensus 218 ~l~~dv~l~~lA~---------~t~G~~gadL~~lv~~Aa 248 (499)
T 2dhr_A 218 PLAEDVDLALLAK---------RTPGFVGADLENLLNEAA 248 (499)
T ss_dssp CCCCSSTTHHHHT---------TSCSCCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHH---------hcCCCCHHHHHHHHHHHH
Confidence 11 1222222 456777777766665543
No 76
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=4.8e-12 Score=125.02 Aligned_cols=163 Identities=39% Similarity=0.650 Sum_probs=127.1
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
||+|+.+++||++||++.++.|+++|||..++|++++.+++.+++.+++.++++.+++++++.++..++||+|.+++.++
T Consensus 134 le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 134 MEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp HHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhh-----------ccccch----hHHHHHh-----chHHHHh-------hcCCChhhHHH
Q psy4285 81 SAATAHADEVNEDTIFTLLVSR-----------VEKYRP----STLDELV-----SHQDIIS-------TIEIPESMLVD 133 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~-----------~ek~~~----~~l~~ll-----s~~~~l~-------~l~~~~~~~~~ 133 (533)
.++.. ...|+.+.+.+..+.. +...+. ..+++++ +..+++. .++++......
T Consensus 214 ~~~~~-~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~ 292 (327)
T 1iqp_A 214 AAAAL-DKKITDENVFMVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVL 292 (327)
T ss_dssp HHHTT-CSEECHHHHHHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGSSSCHHHHHH
T ss_pred HHHhc-CCCCCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHH
Confidence 88763 3357776665433210 000011 1233333 1122221 22477777778
Q ss_pred HHhhccCccccccCCCChhhHHHHHHHHHhc
Q psy4285 134 LVLKMSDIEYRLAAGTSEKIQLSALIAAFNS 164 (533)
Q Consensus 134 ~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~ 164 (533)
++..+++++.++..|.++..+++.++..++.
T Consensus 293 ~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~ 323 (327)
T 1iqp_A 293 LADKIGEYNFRLVEGANEIIQLEALLAQFTL 323 (327)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8888899999999999999999999988764
No 77
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.32 E-value=1.2e-11 Score=125.11 Aligned_cols=71 Identities=20% Similarity=0.245 Sum_probs=56.6
Q ss_pred CcEEEEEeCCCCCCH------------HHHHHHHHHHHh----------cCCCcEEEEEe----CCCCCCChhhhcccee
Q psy4285 371 SYKLIILDEADAMTN------------DAQNALRRIIEK----------FTTNVRFCIIC----NYLSKIPPAIQSRCTR 424 (533)
Q Consensus 371 ~~~vliiDE~d~l~~------------~~~~~Ll~~le~----------~~~~~~~I~~~----n~~~~l~~~l~sR~~~ 424 (533)
...++++||+|++.. ..|++|++.||. ..+++.||+++ +.+..+.|.+++|+..
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i 329 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPI 329 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCE
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccce
Confidence 356999999999853 267899999984 13567788887 2344577999999975
Q ss_pred -eeecCCCHHHHHHHhhc
Q psy4285 425 -FRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 425 -i~~~~~~~~~~~~~l~~ 441 (533)
+.|++++.++...++..
T Consensus 330 ~i~l~~lt~~e~~~Il~~ 347 (444)
T 1g41_A 330 RVELTALSAADFERILTE 347 (444)
T ss_dssp EEECCCCCHHHHHHHHHS
T ss_pred eeeCCCCCHHHHHHHHHH
Confidence 89999999999999953
No 78
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.31 E-value=3.8e-12 Score=126.81 Aligned_cols=103 Identities=6% Similarity=0.054 Sum_probs=93.0
Q ss_pred CCCCCCceEEEEEcCC------CCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHH
Q psy4285 1 IEKFTTNVRFCIICNY------LSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRK 74 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~------~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~ 74 (533)
+|+||++++||++|+. .+++.++|+|||++++|++++.+++.+|+++++.++|+.+++++++.++..++||+|.
T Consensus 101 le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~ 180 (343)
T 1jr3_D 101 TGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLA 180 (343)
T ss_dssp HTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHH
T ss_pred HhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHH
Confidence 5899999999999976 4679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCCcchhhHHhhhhhhc
Q psy4285 75 VLNILQSAATAH-ADEVNEDTIFTLLVSRV 103 (533)
Q Consensus 75 a~~~l~~~~~~~-~~~i~~~~i~~~~~~~~ 103 (533)
+.+.||.++... +..||.+.|.++++...
T Consensus 181 ~~~elekl~l~~~~~~It~e~V~~~~~~~~ 210 (343)
T 1jr3_D 181 LAQALERLSLLWPDGKLTLPRVEQAVNDAA 210 (343)
T ss_dssp HHHHHHHHHHHCTTCEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHhhhh
Confidence 999999998753 44699999887766543
No 79
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.30 E-value=7.3e-12 Score=119.12 Aligned_cols=153 Identities=20% Similarity=0.218 Sum_probs=94.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC--chhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR--GIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN 385 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~ 385 (533)
+++|+|||||||||++++++..+ ...++.+++.+.. ........+....+... ...+.++++||+|.+..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~------~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~i~~~Deid~l~~ 122 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA------RVPFITASGSDFVEMFVGVGAARVRDLFETAK--RHAPCIVFIDEIDAVGR 122 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHT--TSSSEEEEEETHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHHh------CCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHH--hcCCeEEEehhhhhhhc
Confidence 49999999999999999999987 3445555543210 01111112222222111 12457999999987631
Q ss_pred --------------HHHHHHHHHHHhcC--CCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhhcC----
Q psy4285 386 --------------DAQNALRRIIEKFT--TNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLDYD---- 442 (533)
Q Consensus 386 --------------~~~~~Ll~~le~~~--~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~~---- 442 (533)
...+.++..++... ....++.++|.+..+++++++ || ..+.+.+|+.++..+++...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~ 202 (254)
T 1ixz_A 123 KRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK 202 (254)
T ss_dssp ---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS
T ss_pred ccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC
Confidence 12345566665432 335677788999999999998 67 47888999988888877643
Q ss_pred --HH--HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy4285 443 --DI--SFFNIIIWYIKIQEIKIEKGLALTDILTEISLL 477 (533)
Q Consensus 443 --~~--~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~ 477 (533)
+. ++..+.. ...|+++.|+...+.++
T Consensus 203 ~~~~~~~~~~la~---------~~~G~~~~dl~~~~~~a 232 (254)
T 1ixz_A 203 PLAEDVDLALLAK---------RTPGFVGADLENLLNEA 232 (254)
T ss_dssp CBCTTCCHHHHHH---------TCTTCCHHHHHHHHHHH
T ss_pred CCCcccCHHHHHH---------HcCCCCHHHHHHHHHHH
Confidence 11 1222222 45677777766555444
No 80
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.30 E-value=1.8e-11 Score=136.27 Aligned_cols=147 Identities=14% Similarity=0.164 Sum_probs=93.1
Q ss_pred hchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccc----cCcceEEecCCCCCc--------hhHHHH
Q psy4285 289 ESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ----FNAMVLELNASDDRG--------IGIVRD 356 (533)
Q Consensus 289 ~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~----~~~~~~~~~~~~~~~--------~~~~~~ 356 (533)
|++..+..+...+..+..++++|+||||||||++|+++++.+.+... .+..++.++.+.... ...++.
T Consensus 174 Gr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~ 253 (854)
T 1qvr_A 174 GRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKA 253 (854)
T ss_dssp SCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHH
Confidence 33444444545555556667999999999999999999998844221 144566666544321 112333
Q ss_pred HHHHHHhcccCCCCCcEEEEEeCCCCCC--------HHHHHHHHHHHHhcCCCcEEEEEeCCCC----CCChhhhcccee
Q psy4285 357 QIFQFASTKTMHKSSYKLIILDEADAMT--------NDAQNALRRIIEKFTTNVRFCIICNYLS----KIPPAIQSRCTR 424 (533)
Q Consensus 357 ~~~~~~~~~~~~~~~~~vliiDE~d~l~--------~~~~~~Ll~~le~~~~~~~~I~~~n~~~----~l~~~l~sR~~~ 424 (533)
.+...... .++.||||||++.+. .+..+.|..+++. ..+.+|++||... .+++++.+||..
T Consensus 254 ~~~~~~~~-----~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~~~~~~~d~aL~rRf~~ 326 (854)
T 1qvr_A 254 VIQEVVQS-----QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYREIEKDPALERRFQP 326 (854)
T ss_dssp HHHHHHTT-----CSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHHHHHTTCTTTCSCCCC
T ss_pred HHHHHHhc-----CCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchHHhhhccCHHHHhCCce
Confidence 33332211 246799999999997 4456678888875 4577888888653 579999999999
Q ss_pred eeecCCCHHHHHHHhhcC
Q psy4285 425 FRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 425 i~~~~~~~~~~~~~l~~~ 442 (533)
+.+.+|+.++...++..+
T Consensus 327 i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 327 VYVDEPTVEETISILRGL 344 (854)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHhh
Confidence 999999999999998754
No 81
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.29 E-value=1.6e-12 Score=134.33 Aligned_cols=149 Identities=15% Similarity=0.056 Sum_probs=91.4
Q ss_pred hhhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHH------HHH--H
Q psy4285 287 LNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIV------RDQ--I 358 (533)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~ 358 (533)
..|++++...+...+..+. |++|+||||||||++|+++++.+.. +..+...+..- .....+ ... .
T Consensus 24 ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l~~----~~~f~~~~~~~-~t~~dL~G~~~~~~~~~~ 96 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQN----ARAFEYLMTRF-STPEEVFGPLSIQALKDE 96 (500)
T ss_dssp CSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGBSS----CCEEEEECCTT-CCHHHHHCCBC-------
T ss_pred hHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHHhh----hhHHHHHHHhc-CCHHHhcCcccHHHHhhc
Confidence 4566666666665555543 8999999999999999999987622 12222222211 011100 000 1
Q ss_pred HHHHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC----------CCcEEEEEeCCCCC---CChhhhccce-e
Q psy4285 359 FQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFT----------TNVRFCIICNYLSK---IPPAIQSRCT-R 424 (533)
Q Consensus 359 ~~~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~----------~~~~~I~~~n~~~~---l~~~l~sR~~-~ 424 (533)
+.+..........++||||||++++++..++.|+..|++.. +...+|++||.... ..+++.+||. .
T Consensus 97 g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~ 176 (500)
T 3nbx_X 97 GRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIR 176 (500)
T ss_dssp ---CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEE
T ss_pred hhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHHHH
Confidence 11111111000135699999999999999999999998531 12235888886432 4569999994 5
Q ss_pred eeecCCCH-HHHHHHhhcC
Q psy4285 425 FRFGPLDS-SLIMSRLDYD 442 (533)
Q Consensus 425 i~~~~~~~-~~~~~~l~~~ 442 (533)
+.+++|+. ++...++...
T Consensus 177 i~v~~p~~~ee~~~IL~~~ 195 (500)
T 3nbx_X 177 LWLDKVQDKANFRSMLTSQ 195 (500)
T ss_dssp EECCSCCCHHHHHHHHTCC
T ss_pred HHHHHhhhhhhHHHHHhcc
Confidence 77788877 5566676653
No 82
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=8.4e-12 Score=123.02 Aligned_cols=163 Identities=31% Similarity=0.508 Sum_probs=124.7
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
+|+|+.+++||++||++.++.|+|+|||+.++|++++.+++.++|.+++.++++.+++++++.++..++||+|.|++.++
T Consensus 131 le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 131 MELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp HHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhhhc--------cccc-hh---HHHH-Hh----chHHHHhh-------cC-CChhhHHHHH
Q psy4285 81 SAATAHADEVNEDTIFTLLVSRV--------EKYR-PS---TLDE-LV----SHQDIIST-------IE-IPESMLVDLV 135 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~~~--------ek~~-~~---~l~~-ll----s~~~~l~~-------l~-~~~~~~~~~~ 135 (533)
.++... ..|+.+.+.+.++... ..-. .. .+.. ++ +..+++.. +. ++.......+
T Consensus 211 ~~~~~~-~~i~~~~v~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~dl~~~g~~~~~i~~~l~~~~~~l~~~~~~~l~~~l 289 (323)
T 1sxj_B 211 STVAGH-GLVNADNVFKIVDSPHPLIVKKMLLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMI 289 (323)
T ss_dssp HHHHHH-SSBCHHHHHHHHTSCCHHHHHHHHSCSSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTCTTSCHHHHHHHH
T ss_pred HHHhcC-CCcCHHHHHHHHCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 987533 4588777665443211 1000 01 1222 22 11222221 12 5556666777
Q ss_pred hhccCccccccCCCChhhHHHHHHHHHhc
Q psy4285 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNS 164 (533)
Q Consensus 136 ~~~~~~~~~~~~G~~~~~~l~~~~~~~~~ 164 (533)
..+.+++.++..|.++..+++.++..+..
T Consensus 290 ~~l~~~~~~l~~~~~~~l~le~l~~~~~~ 318 (323)
T 1sxj_B 290 KEIGLTHMRILEGVGTYLQLASMLAKIHK 318 (323)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHh
Confidence 77788888888999999999999988753
No 83
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.28 E-value=2.3e-12 Score=130.41 Aligned_cols=137 Identities=18% Similarity=0.217 Sum_probs=90.7
Q ss_pred cccCCCceeEeCCCCCChHHHHHHHHHHHcccc----cc-CcceEEecCCCCC-ch-hHHHHHHH---------------
Q psy4285 302 DENELPHLLFYGPPGTGKTTTILACARKLYTKA----QF-NAMVLELNASDDR-GI-GIVRDQIF--------------- 359 (533)
Q Consensus 302 ~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~----~~-~~~~~~~~~~~~~-~~-~~~~~~~~--------------- 359 (533)
..+..++++|+||||||||++++++++.+.... .. +..++.+++.... .. ..+...+.
T Consensus 41 ~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 120 (384)
T 2qby_B 41 KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLG 120 (384)
T ss_dssp TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTH
T ss_pred cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHH
Confidence 334445699999999999999999999874431 11 3456666643322 11 11111111
Q ss_pred ----HHHhcccCCCCCcEEEEEeCCCCCCHHH-HHH-HHHHHHhcCCCcEEEEEeCCC---CCCChhhhccc-eeeeecC
Q psy4285 360 ----QFASTKTMHKSSYKLIILDEADAMTNDA-QNA-LRRIIEKFTTNVRFCIICNYL---SKIPPAIQSRC-TRFRFGP 429 (533)
Q Consensus 360 ----~~~~~~~~~~~~~~vliiDE~d~l~~~~-~~~-Ll~~le~~~~~~~~I~~~n~~---~~l~~~l~sR~-~~i~~~~ 429 (533)
.+.... .....+|||||+|.+.... ++. +..+++.. .++.+|++||.. ..+++++.+|+ ..+.|+|
T Consensus 121 ~~~~~l~~~l---~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~ 196 (384)
T 2qby_B 121 EYIDKIKNGT---RNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKP 196 (384)
T ss_dssp HHHHHHHHHH---SSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECC
T ss_pred HHHHHHHHHh---ccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECC
Confidence 111111 1122399999999986542 455 55555443 678999999877 67899999996 6999999
Q ss_pred CCHHHHHHHhhcC
Q psy4285 430 LDSSLIMSRLDYD 442 (533)
Q Consensus 430 ~~~~~~~~~l~~~ 442 (533)
++.+++.+++.+.
T Consensus 197 l~~~~~~~il~~~ 209 (384)
T 2qby_B 197 YDAEQLKFILSKY 209 (384)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988763
No 84
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.26 E-value=1.4e-11 Score=122.76 Aligned_cols=136 Identities=8% Similarity=0.012 Sum_probs=102.0
Q ss_pred ccccccCCCc-eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEE
Q psy4285 299 RFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIIL 377 (533)
Q Consensus 299 ~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlii 377 (533)
..++ ++.+| ++|+||+|+||++.+..+++.+.+.+......+.+++ ...+++...... ..+. .++.+|++|
T Consensus 11 ~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~-~~pl-f~~~kvvii 82 (343)
T 1jr3_D 11 AQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----NTDWNAIFSLCQ-AMSL-FASRQTLLL 82 (343)
T ss_dssp HHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-----TCCHHHHHHHHH-HHHH-CCSCEEEEE
T ss_pred HHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-----CCCHHHHHHHhc-CcCC-ccCCeEEEE
Confidence 3344 33444 8999999999999999999988765311112334432 133444443332 2222 257899999
Q ss_pred eCCCC-CCHHHHHHHHHHHHhcCCCcEEEEEeCCC------CCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 378 DEADA-MTNDAQNALRRIIEKFTTNVRFCIICNYL------SKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 378 DE~d~-l~~~~~~~Ll~~le~~~~~~~~I~~~n~~------~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
||++. ++.+.+++|++.++++++++.+|++++.. .++.+++.+||..+.|.+++..++..++.++
T Consensus 83 ~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 83 LLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp ECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred ECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 99999 99999999999999999999999998764 3577899999999999999999999888775
No 85
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.24 E-value=1.2e-11 Score=136.24 Aligned_cols=143 Identities=12% Similarity=0.135 Sum_probs=95.6
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccc----cCcceEEecCC-C--CCchhHHHHHHHH
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ----FNAMVLELNAS-D--DRGIGIVRDQIFQ 360 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~----~~~~~~~~~~~-~--~~~~~~~~~~~~~ 360 (533)
.|++..+..+...+.....+|+||+||||||||++|+++|+.+.+... .+..++.++.. . +.....++..+..
T Consensus 183 iG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~~~~~~ 262 (758)
T 3pxi_A 183 IGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDE 262 (758)
T ss_dssp CCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHH
T ss_pred cCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHHHHHHH
Confidence 345555555666666666678999999999999999999999854321 13345555441 1 1112244554444
Q ss_pred HHhcccCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCC-----CCChhhhccceeeeecCCCHHHH
Q psy4285 361 FASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS-----KIPPAIQSRCTRFRFGPLDSSLI 435 (533)
Q Consensus 361 ~~~~~~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~-----~l~~~l~sR~~~i~~~~~~~~~~ 435 (533)
... ..+.||||| ...+.++.|+..+++ ..+++|++||... .+++++++||..+.|.+|+.++.
T Consensus 263 ~~~------~~~~iLfiD----~~~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~ 330 (758)
T 3pxi_A 263 IRQ------AGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDES 330 (758)
T ss_dssp HHT------CCCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHH
T ss_pred HHh------cCCEEEEEc----CchhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHH
Confidence 432 346799999 445677888888874 5689999999887 79999999999999999999999
Q ss_pred HHHhhcC
Q psy4285 436 MSRLDYD 442 (533)
Q Consensus 436 ~~~l~~~ 442 (533)
..++..+
T Consensus 331 ~~il~~~ 337 (758)
T 3pxi_A 331 IQILQGL 337 (758)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9999854
No 86
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.24 E-value=1.7e-11 Score=123.86 Aligned_cols=135 Identities=24% Similarity=0.301 Sum_probs=89.3
Q ss_pred ccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCC----------------------CCchhHHHHHHHH
Q psy4285 303 ENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD----------------------DRGIGIVRDQIFQ 360 (533)
Q Consensus 303 ~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~ 360 (533)
.....+++|+||||||||++++.+++.+......+..++.+++.. ........+.+..
T Consensus 42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 121 (386)
T 2qby_A 42 EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVK 121 (386)
T ss_dssp TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH
Confidence 334446999999999999999999998743210022344444221 0111222222222
Q ss_pred HHhcccCCCCCcEEEEEeCCCCCC----HHHHHHHHHHHHh-cCCCcEEEEEeCCC---CCCChhhhccc--eeeeecCC
Q psy4285 361 FASTKTMHKSSYKLIILDEADAMT----NDAQNALRRIIEK-FTTNVRFCIICNYL---SKIPPAIQSRC--TRFRFGPL 430 (533)
Q Consensus 361 ~~~~~~~~~~~~~vliiDE~d~l~----~~~~~~Ll~~le~-~~~~~~~I~~~n~~---~~l~~~l~sR~--~~i~~~~~ 430 (533)
.... ...+.+|+|||++.+. .+....|++.++. ...++.+|++||.. ..+++.+.+|| ..+.|.|+
T Consensus 122 ~l~~----~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l 197 (386)
T 2qby_A 122 AVRD----YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPY 197 (386)
T ss_dssp HHHT----CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCC
T ss_pred HHhc----cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCC
Confidence 2211 1347899999999885 4456667777764 24568889999876 46889999999 68999999
Q ss_pred CHHHHHHHhhc
Q psy4285 431 DSSLIMSRLDY 441 (533)
Q Consensus 431 ~~~~~~~~l~~ 441 (533)
+.+++.+++.+
T Consensus 198 ~~~~~~~il~~ 208 (386)
T 2qby_A 198 NAEELEDILTK 208 (386)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999998875
No 87
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.23 E-value=3.7e-11 Score=115.83 Aligned_cols=127 Identities=22% Similarity=0.283 Sum_probs=80.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCC--chhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCC-
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR--GIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMT- 384 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~- 384 (533)
+++|+|||||||||++++++..+ ...++.+++.+.. ........+....+... ...+.++++||+|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~------~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~i~~iDeid~l~~ 146 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA------RVPFITASGSDFVEMFVGVGAARVRDLFETAK--RHAPCIVFIDEIDAVGR 146 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHH--TSCSEEEEEETHHHHHC
T ss_pred eEEEECCCcChHHHHHHHHHHHc------CCCEEEecHHHHHHHHhhHHHHHHHHHHHHHH--hcCCcEEehhhhHhhhc
Confidence 49999999999999999999987 3445555543210 01111111222111111 1245799999998652
Q ss_pred ----------HHHH---HHHHHHHHhc--CCCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhhcC
Q psy4285 385 ----------NDAQ---NALRRIIEKF--TTNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 385 ----------~~~~---~~Ll~~le~~--~~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~~ 442 (533)
.+.. +.++..++.. .....++.++|.+..+++++++ || ..+.+.+|+.++..+++...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 222 (278)
T 1iy2_A 147 KRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIH 222 (278)
T ss_dssp C--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHH
T ss_pred ccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHH
Confidence 1122 3344444432 2335677788999999999998 67 47889999998888887643
No 88
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.22 E-value=8.9e-12 Score=123.42 Aligned_cols=78 Identities=18% Similarity=0.307 Sum_probs=72.5
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++++||++||.+++++|||+|||++++|++++.+++.++|.+.+ .++++++..+++.++||+|+|+++++
T Consensus 132 lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~ 206 (334)
T 1a5t_A 132 LEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQ 206 (334)
T ss_dssp HTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred hcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 5999999999999999999999999999999999999999999998654 56789999999999999999999998
Q ss_pred HHH
Q psy4285 81 SAA 83 (533)
Q Consensus 81 ~~~ 83 (533)
...
T Consensus 207 ~~~ 209 (334)
T 1a5t_A 207 GDN 209 (334)
T ss_dssp SHH
T ss_pred cch
Confidence 754
No 89
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=9.9e-12 Score=120.80 Aligned_cols=150 Identities=15% Similarity=0.086 Sum_probs=99.0
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
|||||++++|||+||++++++|||+|| +++|++++++++.+||.+++ + ++++++ ..++||+|+|+|+++
T Consensus 106 LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~~~L~~~~---~--i~~~~~----~~~~g~~~~al~~l~ 174 (305)
T 2gno_A 106 LEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFRDLVKEKI---G--DLWEEL----PLLERDFKTALEAYK 174 (305)
T ss_dssp HHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHHHHHHHHH---T--THHHHC----GGGGTCHHHHHHHHH
T ss_pred HhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHHHHHHHHh---C--CCHHHH----HHHCCCHHHHHHHHH
Confidence 699999999999999999999999999 99999999999999999887 2 455544 568999999999997
Q ss_pred HHHHh---------CCCCcchhhHHhhh--------------hhhccccc---hhHHHHHhc---h---HHHHhhc----
Q psy4285 81 SAATA---------HADEVNEDTIFTLL--------------VSRVEKYR---PSTLDELVS---H---QDIISTI---- 124 (533)
Q Consensus 81 ~~~~~---------~~~~i~~~~i~~~~--------------~~~~ek~~---~~~l~~lls---~---~~~l~~l---- 124 (533)
..... ... +.+.|..++ .....+-. .+.+++++. . .+++..+
T Consensus 175 ~~~~~~~~l~~~~~~~~--~~~~v~~~~~~~~~~~~~v~~l~~ai~~~~~~~a~~~~~~l~~~~~g~~~~~~i~~~~r~l 252 (305)
T 2gno_A 175 LGAEKLSGLMESLKVLE--TEKLLKKVLSKGLEGYLACRELLERFSKVESKEFFALFDQVTNTITGKDAFLLIQRLTRII 252 (305)
T ss_dssp HHHHHHHHHHHHHHHSC--HHHHTTTTTCSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHSCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc--cHHHHHHHHccCCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 43210 000 122222211 11111000 122333332 1 1111111
Q ss_pred -CCChhhHHHHHhhccCccccccC---CCChhhHHHHHHHHHh
Q psy4285 125 -EIPESMLVDLVLKMSDIEYRLAA---GTSEKIQLSALIAAFN 163 (533)
Q Consensus 125 -~~~~~~~~~~~~~~~~~~~~~~~---G~~~~~~l~~~~~~~~ 163 (533)
......+...+..++.+++++.. |.++..|++++++.+.
T Consensus 253 ~~~~~~~~~~~l~~~~~~~~~~~~k~~g~~~~lql~~l~~~~~ 295 (305)
T 2gno_A 253 LHENTWESVEDQKSVSFLDSILRVKIANLNNKLTLMNILAIHR 295 (305)
T ss_dssp HHTSCCCSHHHHHHHHHHHHHHTCCGGGCCHHHHHHHHHHHHH
T ss_pred HhhchhhhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 01112224556677888899999 9999999999999985
No 90
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.19 E-value=2.8e-12 Score=136.22 Aligned_cols=126 Identities=19% Similarity=0.237 Sum_probs=78.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHH-HHHHhcc-cCCCCCcEEEEEeCCCCCCH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI-FQFASTK-TMHKSSYKLIILDEADAMTN 385 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~vliiDE~d~l~~ 385 (533)
|+||+||||||||++|+++++.+.... +. .....++.+..+. ...... +.+.... ....+..++++|||+|+++.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~-~~-~~~~~~~~~l~~~-~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~ 405 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAV-YT-TGKGSTAAGLTAA-VVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRD 405 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEE-CC-CTTCSTTTTSEEE-CSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCS
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCce-ec-CCCccccccccce-eeeccccccccccCCeeEecCCCcEEeehhhhCCH
Confidence 799999999999999999998762211 00 0000111111100 000000 0000000 00012347999999999999
Q ss_pred HHHHHHHHHHHhc-------------CCCcEEEEEeCCCC-------------CCChhhhccce-eeeecCCCHHHHH
Q psy4285 386 DAQNALRRIIEKF-------------TTNVRFCIICNYLS-------------KIPPAIQSRCT-RFRFGPLDSSLIM 436 (533)
Q Consensus 386 ~~~~~Ll~~le~~-------------~~~~~~I~~~n~~~-------------~l~~~l~sR~~-~i~~~~~~~~~~~ 436 (533)
+.+++|++.|++. +.++.+|+|+|... .++++++|||+ .+.+.+++.++..
T Consensus 406 ~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~ 483 (595)
T 3f9v_A 406 EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDR 483 (595)
T ss_dssp HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHH
T ss_pred hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHH
Confidence 9999999999863 35678999999876 89999999995 5556666655533
No 91
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.19 E-value=4.2e-11 Score=131.94 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=98.3
Q ss_pred hhchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccc----cCcceEEecCCCC------Cc--hhHHH
Q psy4285 288 NESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ----FNAMVLELNASDD------RG--IGIVR 355 (533)
Q Consensus 288 ~~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~----~~~~~~~~~~~~~------~~--~~~~~ 355 (533)
.|++..+..+...+......+++|+||||||||++|+++++.+.+... .+..++.++.... .+ ...++
T Consensus 189 iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~ 268 (758)
T 1r6b_X 189 IGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFK 268 (758)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHH
Confidence 345555555666666666667999999999999999999998854321 1233444443221 11 22333
Q ss_pred HHHHHHHhcccCCCCCcEEEEEeCCCCC---------CHHHHHHHHHHHHhcCCCcEEEEEeCCC-----CCCChhhhcc
Q psy4285 356 DQIFQFASTKTMHKSSYKLIILDEADAM---------TNDAQNALRRIIEKFTTNVRFCIICNYL-----SKIPPAIQSR 421 (533)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~vliiDE~d~l---------~~~~~~~Ll~~le~~~~~~~~I~~~n~~-----~~l~~~l~sR 421 (533)
..+.... ...+.+|||||++.+ ..+..+.|..+++. ..+.+|++||.+ ..+++++.+|
T Consensus 269 ~~~~~~~------~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~at~~~~~~~~~~~d~aL~~R 340 (758)
T 1r6b_X 269 ALLKQLE------QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNIFEKDRALARR 340 (758)
T ss_dssp HHHHHHS------SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEECHHHHHCCCCCTTSSGGG
T ss_pred HHHHHHH------hcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEEeCchHHhhhhhcCHHHHhC
Confidence 3333221 124689999999998 23444555555553 457888888753 3678999999
Q ss_pred ceeeeecCCCHHHHHHHhhcC
Q psy4285 422 CTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 422 ~~~i~~~~~~~~~~~~~l~~~ 442 (533)
|..+.|.+|+.++..+++..+
T Consensus 341 f~~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 341 FQKIDITEPSIEETVQIINGL 361 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHH
T ss_pred ceEEEcCCCCHHHHHHHHHHH
Confidence 999999999999998888765
No 92
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.18 E-value=1e-10 Score=128.64 Aligned_cols=124 Identities=24% Similarity=0.348 Sum_probs=91.1
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCc------hhHHHHHHHHHHhcccCCCCCcEEEEEeCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG------IGIVRDQIFQFASTKTMHKSSYKLIILDEA 380 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDE~ 380 (533)
.+++|+||||||||++|++++..+ +..++.+++++..+ ...++..+..... ..+.++|+||+
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~l------~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~------~~p~il~iDEi 306 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIMSKLAGESESNLRKAFEEAEK------NAPAIIFIDEL 306 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHTT------TCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHH------HCSEEEEEESG
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc------CCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHh------cCCcEEEeccH
Confidence 359999999999999999999876 55667777543211 1223333322221 24579999999
Q ss_pred CCCCH-----------HHHHHHHHHHHhc--CCCcEEEEEeCCCCCCChhhhc--cc-eeeeecCCCHHHHHHHhhcC
Q psy4285 381 DAMTN-----------DAQNALRRIIEKF--TTNVRFCIICNYLSKIPPAIQS--RC-TRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 381 d~l~~-----------~~~~~Ll~~le~~--~~~~~~I~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~~ 442 (533)
+.+.. ...+.|+..++.. ..++.+|++||.+..+++++++ || ..+.+..|+.++..+++...
T Consensus 307 d~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~ 384 (806)
T 1ypw_A 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIH 384 (806)
T ss_dssp GGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHT
T ss_pred HHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHH
Confidence 88743 3456788888743 3467899999999999999998 88 56889999999998888765
No 93
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.16 E-value=6.1e-12 Score=132.87 Aligned_cols=208 Identities=16% Similarity=0.224 Sum_probs=116.5
Q ss_pred CcccchhhhH-HHHhhhhhcccccCCCce------EEEE-cCc----------cccCHHHHHHHHccCCCChhHHHHHHH
Q psy4285 177 SDDRGIGIVR-DQIFQFASTKTMHKSSYK------LIIL-DEA----------DAMTNDAQNALRRKLPVTPDGKKAIID 238 (533)
Q Consensus 177 sd~~g~~~~~-d~i~~~a~~~~l~~~~~~------~iil-DE~----------d~l~~~a~~~LRr~~~~~~~~l~~l~~ 238 (533)
.|+.|++|.+ |+| |.+.|+..+++. +++| .++ +.|.+.+..+| +
T Consensus 47 ~~i~gigf~~aD~i---a~~~g~~~~~~~R~~a~~~~~l~~~~~~~Ght~~~~~~l~~~~~~~l---------------~ 108 (574)
T 3e1s_A 47 TEVEGIGFLTADKL---WQARGGALDDPRRLTAAAVYALQLAGTQAGHSFLPRSRAEKGVVHYT---------------R 108 (574)
T ss_dssp GTSSSCCHHHHHTT---C-------CCHHHHHHHHHHHHHHHHHHTCCSCEEHHHHHHHHHHHH---------------C
T ss_pred CCcCCCCHHHHHHH---HHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCEeecHHHHHHHHHHHh---------------C
Confidence 4889999999 999 999998877765 3444 222 22223333322 4
Q ss_pred hccCchHHhhcHHHHHHhhcCCC-C---------CccccccccCCCCHHHHHHHHHHHhhhchh----------------
Q psy4285 239 LSDGDMRKVLNILQSAATAHADE-V---------NEDTVYNSVGYPTKTEITNILRWLLNESMD---------------- 292 (533)
Q Consensus 239 ~s~~di~~~L~~L~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------- 292 (533)
++...+.+++..+...+....+. . ....+|....+..+..+...+..+......
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~E~~ia~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (574)
T 3e1s_A 109 VTPGQARLAVETAVELGRLSEDDSPLFAAEAAATGEGRIYLPHVLRAEKKLASLIRTLLATPPADGAGNDDWAVPKKARK 188 (574)
T ss_dssp CCHHHHHHHHHHHHHHTSSEEECCCCSCC---CCSCCEEECHHHHHHHHHHHHHHHHHHHSCCCC-CCCCCCCCCTTTTT
T ss_pred CCHHHHHHHHHHHHhCCCEEEEeccccccccccCCCcEEEcHHHHHHHHHHHHHHHHHhccCCccCCChhhHHHHHhhcC
Confidence 45556677777777766553322 1 112355555555666676666554432111
Q ss_pred -----hhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHH-------HH
Q psy4285 293 -----LCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI-------FQ 360 (533)
Q Consensus 293 -----~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 360 (533)
....+.... ..+.++++|||||||||++.+++..+... +..+. +.+++.+....+.+.+ ..
T Consensus 189 ~L~~~Q~~Av~~~~---~~~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl-~~ApT~~Aa~~L~e~~~~~a~Tih~ 261 (574)
T 3e1s_A 189 GLSEEQASVLDQLA---GHRLVVLTGGPGTGKSTTTKAVADLAESL---GLEVG-LCAPTGKAARRLGEVTGRTASTVHR 261 (574)
T ss_dssp TCCHHHHHHHHHHT---TCSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEE-EEESSHHHHHHHHHHHTSCEEEHHH
T ss_pred CCCHHHHHHHHHHH---hCCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEE-EecCcHHHHHHhHhhhcccHHHHHH
Confidence 001111111 12358999999999999999999877443 33333 3344444444444321 11
Q ss_pred HHhccc-------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q psy4285 361 FASTKT-------MHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412 (533)
Q Consensus 361 ~~~~~~-------~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~ 412 (533)
+....+ ......++|||||+++++......|++.+ +.+.++|++++...
T Consensus 262 ll~~~~~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 262 LLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp HTTEETTEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred HHcCCcchhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhC---cCCCEEEEEecccc
Confidence 211110 01235789999999999998777777666 46788999987544
No 94
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.15 E-value=3.8e-10 Score=113.78 Aligned_cols=176 Identities=15% Similarity=0.106 Sum_probs=114.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHH----HHhcccC-----CCCCcEEEEEe
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ----FASTKTM-----HKSSYKLIILD 378 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~~~vliiD 378 (533)
+++++|++||||+++|++++...... ..+++.++++.......-.++++. |...... ..+..++||+|
T Consensus 162 ~vli~Ge~GtGK~~lAr~ih~~s~r~---~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfld 238 (387)
T 1ny5_A 162 PVLITGESGVGKEVVARLIHKLSDRS---KEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLD 238 (387)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHSTTT---TSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEE
T ss_pred CeEEecCCCcCHHHHHHHHHHhcCCC---CCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEc
Confidence 48999999999999999998865332 457888888764322211121110 0000000 01346799999
Q ss_pred CCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHHHhh
Q psy4285 379 EADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440 (533)
Q Consensus 379 E~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~~l~ 440 (533)
|++.++.+.|..|++.+++. +.++++|++||.. ..+.+.+..|+..+.+.-|+ |+
T Consensus 239 ei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPp-------Lr 311 (387)
T 1ny5_A 239 EIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPP-------LR 311 (387)
T ss_dssp SGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCC-------GG
T ss_pred ChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCc-------ch
Confidence 99999999999999999863 2478899999863 45778888888777776666 55
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q psy4285 441 YDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMS 496 (533)
Q Consensus 441 ~~~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (533)
..++|+..+++.+-. ......+.....+.......+..+.||++++ ++-+.+.
T Consensus 312 eR~~Di~~l~~~~l~--~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvr-eL~~~i~ 364 (387)
T 1ny5_A 312 ERKEDIIPLANHFLK--KFSRKYAKEVEGFTKSAQELLLSYPWYGNVR-ELKNVIE 364 (387)
T ss_dssp GCHHHHHHHHHHHHH--HHHHHTTCCCCEECHHHHHHHHHSCCTTHHH-HHHHHHH
T ss_pred hccccHHHHHHHHHH--HHHHHcCCCCCCCCHHHHHHHHhCCCCcHHH-HHHHHHH
Confidence 555666666654221 1112233333334456777788899999987 4333333
No 95
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.15 E-value=1.1e-10 Score=120.54 Aligned_cols=99 Identities=11% Similarity=0.135 Sum_probs=87.0
Q ss_pred CCCCCCceEEEEEcCC-------------CCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Q psy4285 1 IEKFTTNVRFCIICNY-------------LSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDL 67 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~-------------~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 67 (533)
||+|+.+ .|||.||+ ++++.|+|+|||+.++|++++.+++.++|++.+..+++.++++++..+++.
T Consensus 319 lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~ 397 (456)
T 2c9o_A 319 LESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEI 397 (456)
T ss_dssp TTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHH
T ss_pred hhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 7999999 68889844 889999999999999999999999999999999999999999999999999
Q ss_pred c-CCCHHHHHHHHHHHHHh----CCCCcchhhHHhhhh
Q psy4285 68 S-DGDMRKVLNILQSAATA----HADEVNEDTIFTLLV 100 (533)
Q Consensus 68 ~-~g~~r~a~~~l~~~~~~----~~~~i~~~~i~~~~~ 100 (533)
+ +|++|.|+++++.+... ....|+.+.|.+.+.
T Consensus 398 a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~ 435 (456)
T 2c9o_A 398 GTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISE 435 (456)
T ss_dssp HHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHH
Confidence 9 99999999999987332 334688888876543
No 96
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.14 E-value=9.3e-10 Score=110.03 Aligned_cols=165 Identities=16% Similarity=0.130 Sum_probs=111.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCC------------CCCcEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH------------KSSYKLI 375 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~vl 375 (533)
.++++|++||||+++|++++...... + .++.++++.........++++ .....+ .+..++|
T Consensus 154 ~vli~GesGtGKe~lAr~ih~~s~r~---~-~fv~vnc~~~~~~~~~~~lfg---~~~g~~tga~~~~~g~~~~a~~gtl 226 (368)
T 3dzd_A 154 PVLITGESGTGKEIVARLIHRYSGRK---G-AFVDLNCASIPQELAESELFG---HEKGAFTGALTRKKGKLELADQGTL 226 (368)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCC---S-CEEEEESSSSCTTTHHHHHHE---ECSCSSSSCCCCEECHHHHTTTSEE
T ss_pred hheEEeCCCchHHHHHHHHHHhcccc---C-CcEEEEcccCChHHHHHHhcC---ccccccCCcccccCChHhhcCCCeE
Confidence 58999999999999999999876333 2 388888876533322222211 111100 1345799
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhc-----------CCCcEEEEEeCCC-------CCCChhhhccceeeeecCCCHHHHHH
Q psy4285 376 ILDEADAMTNDAQNALRRIIEKF-----------TTNVRFCIICNYL-------SKIPPAIQSRCTRFRFGPLDSSLIMS 437 (533)
Q Consensus 376 iiDE~d~l~~~~~~~Ll~~le~~-----------~~~~~~I~~~n~~-------~~l~~~l~sR~~~i~~~~~~~~~~~~ 437 (533)
|+||++.++.+.|..|++.+++. +.++++|++||.. ..+.+.|..|+..+.+.-|+
T Consensus 227 fldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPp------ 300 (368)
T 3dzd_A 227 FLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPP------ 300 (368)
T ss_dssp EEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCC------
T ss_pred EecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCC------
Confidence 99999999999999999999863 2368899999854 35778899999877766666
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhHH
Q psy4285 438 RLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESML 488 (533)
Q Consensus 438 ~l~~~~~~~~~ll~~~~~l~~l~~~~~~~~~di~~~~~~~~~~~~~~~~~~ 488 (533)
|+..++|+..+++.+- .+.....+.....+.....+.+..+.||++++
T Consensus 301 -LreR~~Di~~l~~~~l--~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvr 348 (368)
T 3dzd_A 301 -LRERGKDVILLAEYFL--KKFAKEYKKNCFELSEETKEYLMKQEWKGNVR 348 (368)
T ss_dssp -GGGSTTHHHHHHHHHH--HHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHH
T ss_pred -hhhchhhHHHHHHHHH--HHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHH
Confidence 5555555555555321 12212234333345566778889999999986
No 97
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.12 E-value=2e-10 Score=115.62 Aligned_cols=101 Identities=21% Similarity=0.411 Sum_probs=92.0
Q ss_pred CCCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy4285 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQ 80 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~ 80 (533)
+|+|+.+++||++|+...++.++|+|||+.++|++++.+++.++|.+.+.++++.++++++..++..++||+|.+.+.++
T Consensus 143 le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 143 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcchhhHHhhhhh
Q psy4285 81 SAATAHADEVNEDTIFTLLVS 101 (533)
Q Consensus 81 ~~~~~~~~~i~~~~i~~~~~~ 101 (533)
.+.......|+.+.|.++++.
T Consensus 223 ~~~~~~~~~i~~~~v~~~~~~ 243 (373)
T 1jr3_A 223 QAIASGDGQVSTQAVSAMLGT 243 (373)
T ss_dssp HHHHHTTTCBCHHHHHHHTTC
T ss_pred HHHHhcCCcccHHHHHHHhCC
Confidence 987655567898888765543
No 98
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.11 E-value=1.4e-10 Score=100.31 Aligned_cols=98 Identities=14% Similarity=0.252 Sum_probs=69.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 387 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~ 387 (533)
.++|+||+|+||||++++++..+... +...+.++..+.... .+ ...+++|+|||++.+....
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~---g~~~~~~~~~~~~~~--------~~-------~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEA---GKNAAYIDAASMPLT--------DA-------AFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTT---TCCEEEEETTTSCCC--------GG-------GGGCSEEEEESTTCCCSHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc---CCcEEEEcHHHhhHH--------HH-------HhCCCEEEEeCccccChHH
Confidence 58999999999999999999987432 344566666554332 11 1245799999999998777
Q ss_pred HHHHHHHHHhcCC-Cc-EEEEEeCCCC-CC--Chhhhccce
Q psy4285 388 QNALRRIIEKFTT-NV-RFCIICNYLS-KI--PPAIQSRCT 423 (533)
Q Consensus 388 ~~~Ll~~le~~~~-~~-~~I~~~n~~~-~l--~~~l~sR~~ 423 (533)
+..|+.+++.... +. ++|++||.+. .+ .+.+.||+.
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMA 140 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGG
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHh
Confidence 8888888875322 23 4788888532 22 289999984
No 99
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.04 E-value=3.5e-10 Score=101.01 Aligned_cols=116 Identities=19% Similarity=0.225 Sum_probs=70.3
Q ss_pred hhhhcccccccC-CCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCc
Q psy4285 294 CYKINRFIDENE-LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSY 372 (533)
Q Consensus 294 ~~~l~~~~~~~~-~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (533)
...++.++..-. ..+++|+||||||||++|.++++.+.+ .++.+..+. ..- .... -.+.
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g------~i~~fans~--s~f--------~l~~----l~~~ 104 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG------AVISFVNST--SHF--------WLEP----LTDT 104 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC------EECCCCCSS--SCG--------GGGG----GTTC
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC------CeeeEEecc--chh--------hhcc----cCCC
Confidence 445555554311 125999999999999999999998832 122111110 000 0000 0235
Q ss_pred EEEEEeCCCCCCHHH-HHHHHHHHHhcC-------------CCcEEEEEeCCC---CCCChhhhccceeeeecC
Q psy4285 373 KLIILDEADAMTNDA-QNALRRIIEKFT-------------TNVRFCIICNYL---SKIPPAIQSRCTRFRFGP 429 (533)
Q Consensus 373 ~vliiDE~d~l~~~~-~~~Ll~~le~~~-------------~~~~~I~~~n~~---~~l~~~l~sR~~~i~~~~ 429 (533)
+++++||++.-..+. ...+..+++..+ ....+|+|||.. ....+.|.||+..+.|+.
T Consensus 105 kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~F~~ 178 (212)
T 1tue_A 105 KVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPN 178 (212)
T ss_dssp SSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEECCS
T ss_pred CEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEEcCC
Confidence 699999998532121 234666666532 235799999974 344578999999888874
No 100
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=99.02 E-value=6.3e-10 Score=104.34 Aligned_cols=126 Identities=14% Similarity=0.143 Sum_probs=77.8
Q ss_pred hhhhhcccccccCC-C-ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCC
Q psy4285 293 LCYKINRFIDENEL-P-HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKS 370 (533)
Q Consensus 293 ~~~~l~~~~~~~~~-~-~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (533)
....+..+++...+ . +++|+||||||||++|.++|+.+... ..++.+.. .+.... -.
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~-------G~vn~~~~-----------~f~l~~---~~ 147 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFY-------GCVNWTNE-----------NFPFND---CV 147 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCE-------EECCTTCS-----------SCTTGG---GS
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhccc-------ceeecccc-----------cccccc---cc
Confidence 34456667665422 2 49999999999999999999974111 12222110 010000 02
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHH--------hcC-----CCcEEEEEeCCC-----------CCCChhhhccceeee
Q psy4285 371 SYKLIILDEADAMTNDAQNALRRIIE--------KFT-----TNVRFCIICNYL-----------SKIPPAIQSRCTRFR 426 (533)
Q Consensus 371 ~~~vliiDE~d~l~~~~~~~Ll~~le--------~~~-----~~~~~I~~~n~~-----------~~l~~~l~sR~~~i~ 426 (533)
...+++.||..+. .+.++.+.++++ +.. ..+.+|+|||.. ....++|+||+..+.
T Consensus 148 ~k~i~l~Ee~~~~-~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~ 226 (267)
T 1u0j_A 148 DKMVIWWEEGKMT-AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFE 226 (267)
T ss_dssp SCSEEEECSCCEE-TTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEE
T ss_pred ccEEEEeccccch-hHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEEEEE
Confidence 3456666666655 456667777776 322 567899999972 245689999999999
Q ss_pred ec--------CCCHHHHHHHhh
Q psy4285 427 FG--------PLDSSLIMSRLD 440 (533)
Q Consensus 427 ~~--------~~~~~~~~~~l~ 440 (533)
|. +++++++...+.
T Consensus 227 F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 227 LTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp CCSCCCTTSCCCCHHHHHHHHH
T ss_pred CCCcCCcccCCCCHHHHHHHHH
Confidence 98 555555555443
No 101
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.02 E-value=2.6e-10 Score=121.94 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=45.7
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhc---------------------CCCcEEEEEeCCC--CCCChhhhccce
Q psy4285 371 SYKLIILDEADAMTNDAQNALRRIIEKF---------------------TTNVRFCIICNYL--SKIPPAIQSRCT 423 (533)
Q Consensus 371 ~~~vliiDE~d~l~~~~~~~Ll~~le~~---------------------~~~~~~I~~~n~~--~~l~~~l~sR~~ 423 (533)
.+++|||||++.+++..++.|++.|++. +.++++|++||.. ..++++|++||.
T Consensus 201 ~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~R~~ 276 (604)
T 3k1j_A 201 HKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIR 276 (604)
T ss_dssp TTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHHHHHH
T ss_pred CCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHHHHhh
Confidence 4569999999999999999999999842 2467899999976 579999999994
No 102
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.98 E-value=6.8e-10 Score=99.48 Aligned_cols=99 Identities=20% Similarity=0.259 Sum_probs=62.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccC----CCCCcEEEEEeCCC--
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTM----HKSSYKLIILDEAD-- 381 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~vliiDE~d-- 381 (533)
+++|+|||||||||++++++..+.... +..+..++..+ ........+...... ....+++|||||++
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~--g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKK--GIRGYFFDTKD-----LIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHS--CCCCCEEEHHH-----HHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHc--CCeEEEEEHHH-----HHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 589999999999999999999874222 22222222211 111111111100000 00246799999998
Q ss_pred CCCHHHHHHHHHHHHhcC-CCcEEEEEeCCCCC
Q psy4285 382 AMTNDAQNALRRIIEKFT-TNVRFCIICNYLSK 413 (533)
Q Consensus 382 ~l~~~~~~~Ll~~le~~~-~~~~~I~~~n~~~~ 413 (533)
.++...+..|++++++.. .+..+|++||.+..
T Consensus 113 ~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 113 RLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 567888888888887643 56789999998764
No 103
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.94 E-value=1.7e-09 Score=110.66 Aligned_cols=112 Identities=20% Similarity=0.310 Sum_probs=92.5
Q ss_pred CceEEEEEc--CCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhh-------cCCCCCHHHHHHHHHhcCCCHHHHH
Q psy4285 6 TNVRFCIIC--NYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQ-------EKVNVTPDGKKAIIDLSDGDMRKVL 76 (533)
Q Consensus 6 ~~~~~il~~--~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~g~~r~a~ 76 (533)
+.++||.+| |+.+.+.++|+|||+++.|++++.+++..++.+.+.+ +++.+++++++.++..++||+|.++
T Consensus 133 ~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 457788777 7778999999999999999999999999999999876 5577999999999999999999999
Q ss_pred HHHHHHHHhCC------CCcchhhHHhhhhhhccccch--hHHHHHhch
Q psy4285 77 NILQSAATAHA------DEVNEDTIFTLLVSRVEKYRP--STLDELVSH 117 (533)
Q Consensus 77 ~~l~~~~~~~~------~~i~~~~i~~~~~~~~ek~~~--~~l~~lls~ 117 (533)
|+|+.+..... ..||.+.+.++++.....|+. +.+|++++.
T Consensus 213 n~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isa 261 (447)
T 3pvs_A 213 NTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISA 261 (447)
T ss_dssp HHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHH
Confidence 99999987643 249999998888766655554 357777653
No 104
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.93 E-value=3.7e-09 Score=99.08 Aligned_cols=98 Identities=21% Similarity=0.420 Sum_probs=89.1
Q ss_pred CCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q psy4285 2 EKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQS 81 (533)
Q Consensus 2 E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~~ 81 (533)
|+++.++++|++||....+.++++|||..++|++++.+++.+++.+.+.++++.++++.++.+++.++||+|.+.++++.
T Consensus 151 ~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 151 EEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp HSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred HHHhCCCCcchhhHHhhh
Q psy4285 82 AATAHADEVNEDTIFTLL 99 (533)
Q Consensus 82 ~~~~~~~~i~~~~i~~~~ 99 (533)
+.......|+.+.+.+++
T Consensus 231 ~~~~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 231 AIASGDGQVSTQAVSAML 248 (250)
T ss_dssp HHTTTTSSBCHHHHHHHS
T ss_pred HHhccCceecHHHHHHHh
Confidence 877555578888876654
No 105
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.93 E-value=2.6e-09 Score=128.76 Aligned_cols=130 Identities=16% Similarity=0.207 Sum_probs=94.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcc---------cCCCCCcEEEEEe
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK---------TMHKSSYKLIILD 378 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~vliiD 378 (533)
++||+||||||||++|+.++... .+..+..++.+...+...+.+.+....... +...+...|+|||
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~~-----~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiD 1343 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRNS-----SLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCD 1343 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC-----SSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHhcC-----CCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEec
Confidence 69999999999999996665543 145666777776666666665555432111 1012346799999
Q ss_pred CCCCCCH------HHHHHHHHHHHhcC------------CCcEEEEEeCCCC-----CCChhhhccceeeeecCCCHHHH
Q psy4285 379 EADAMTN------DAQNALRRIIEKFT------------TNVRFCIICNYLS-----KIPPAIQSRCTRFRFGPLDSSLI 435 (533)
Q Consensus 379 E~d~l~~------~~~~~Ll~~le~~~------------~~~~~I~~~n~~~-----~l~~~l~sR~~~i~~~~~~~~~~ 435 (533)
|+++-.. ...+.|.+.+|... .++.+|+++|++. .++++++|||..+.++.|+.+++
T Consensus 1344 Einmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l 1423 (2695)
T 4akg_A 1344 EINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSL 1423 (2695)
T ss_dssp TTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHH
T ss_pred ccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCHHHH
Confidence 9987643 35667777777421 2478999999984 79999999999999999999999
Q ss_pred HHHhhcC
Q psy4285 436 MSRLDYD 442 (533)
Q Consensus 436 ~~~l~~~ 442 (533)
..++..+
T Consensus 1424 ~~I~~~i 1430 (2695)
T 4akg_A 1424 SQIYEIY 1430 (2695)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888765
No 106
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.93 E-value=3.4e-09 Score=97.89 Aligned_cols=98 Identities=42% Similarity=0.710 Sum_probs=89.1
Q ss_pred CCCCCceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q psy4285 2 EKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQS 81 (533)
Q Consensus 2 E~~~~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~~ 81 (533)
|+++.++++|++||.+..+.++++|||..+.|++++.+++.+++.+.+.+.++.+++++++.+++.++||+|.+++.++.
T Consensus 127 ~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 127 EMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp HHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred HHHhCCCCcchhhHHhhhh
Q psy4285 82 AATAHADEVNEDTIFTLLV 100 (533)
Q Consensus 82 ~~~~~~~~i~~~~i~~~~~ 100 (533)
++... ..|+.+.+.++++
T Consensus 207 ~~~~~-~~I~~~~v~~~~~ 224 (226)
T 2chg_A 207 AAAIG-EVVDADTIYQITA 224 (226)
T ss_dssp HHHTC-SCBCHHHHHHHHH
T ss_pred HHhcC-ceecHHHHHHHhc
Confidence 98754 5789888876554
No 107
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.80 E-value=6e-09 Score=106.16 Aligned_cols=132 Identities=19% Similarity=0.296 Sum_probs=83.2
Q ss_pred CCceeE--eCCCCCChHHHHHHHHHHHcccc---ccCcceEEecCCCCCch-hHHHHH---------------------H
Q psy4285 306 LPHLLF--YGPPGTGKTTTILACARKLYTKA---QFNAMVLELNASDDRGI-GIVRDQ---------------------I 358 (533)
Q Consensus 306 ~~~~ll--~GppGtGKT~la~~la~~l~~~~---~~~~~~~~~~~~~~~~~-~~~~~~---------------------~ 358 (533)
..++++ +||||+|||++++.+++.+.... ..+..++.+++...... ...... +
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 129 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKAL 129 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 345888 99999999999999998874320 01223445553221111 111111 1
Q ss_pred HHHHhcccCCCCCcEEEEEeCCCCCC------HHHHHHHHHHHHhcC-----CCcEEEEEeCCCC---CCC---hhhhcc
Q psy4285 359 FQFASTKTMHKSSYKLIILDEADAMT------NDAQNALRRIIEKFT-----TNVRFCIICNYLS---KIP---PAIQSR 421 (533)
Q Consensus 359 ~~~~~~~~~~~~~~~vliiDE~d~l~------~~~~~~Ll~~le~~~-----~~~~~I~~~n~~~---~l~---~~l~sR 421 (533)
...... ...+.+|||||++.+. .+....|++.++..+ .++.+|++|+.+. .++ +.+.+|
T Consensus 130 ~~~l~~----~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~ 205 (412)
T 1w5s_A 130 VDNLYV----ENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQ 205 (412)
T ss_dssp HHHHHH----HTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTT
T ss_pred HHHHHh----cCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhh
Confidence 111110 1346799999999974 356666777777643 5677888887554 233 666677
Q ss_pred c-eeeeecCCCHHHHHHHhhc
Q psy4285 422 C-TRFRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 422 ~-~~i~~~~~~~~~~~~~l~~ 441 (533)
+ ..+.+.|++.+++.+++.+
T Consensus 206 ~~~~i~l~~l~~~e~~~ll~~ 226 (412)
T 1w5s_A 206 IGFKLHLPAYKSRELYTILEQ 226 (412)
T ss_dssp CSEEEECCCCCHHHHHHHHHH
T ss_pred cCCeeeeCCCCHHHHHHHHHH
Confidence 6 3499999999999998854
No 108
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.69 E-value=9.4e-09 Score=93.77 Aligned_cols=94 Identities=18% Similarity=0.170 Sum_probs=55.0
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCc-------hhHHHHHHHHHHhcccCCCCCcEEEEEeC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG-------IGIVRDQIFQFASTKTMHKSSYKLIILDE 379 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~vliiDE 379 (533)
.+++|+||||||||++++++++.+... +..+..++.++... .......+..+ ...++|||||
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~lilDe 123 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR---NVSSLIVYVPELFRELKHSLQDQTMNEKLDYI--------KKVPVLMLDD 123 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEEEHHHHHHHHHHC---CCCHHHHHHH--------HHSSEEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEhHHHHHHHHHHhccchHHHHHHHh--------cCCCEEEEcC
Confidence 469999999999999999999988543 23343333321100 00001111111 1235999999
Q ss_pred CCCCCH--HHHHHHH-HHHHhc-CCCcEEEEEeCCC
Q psy4285 380 ADAMTN--DAQNALR-RIIEKF-TTNVRFCIICNYL 411 (533)
Q Consensus 380 ~d~l~~--~~~~~Ll-~~le~~-~~~~~~I~~~n~~ 411 (533)
++.... +.+..++ .+++.. ..+..+|+|||..
T Consensus 124 i~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 124 LGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp ECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 977543 3344344 466543 4567899999864
No 109
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.69 E-value=6.8e-08 Score=96.80 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=83.5
Q ss_pred CCCCCCceEEEEEcC------------CCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhc
Q psy4285 1 IEKFTTNVRFCIICN------------YLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLS 68 (533)
Q Consensus 1 ~E~~~~~~~~il~~~------------~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 68 (533)
+|+++..+ ++++++ ++..+.|+|+|||.++.|++|+.+++.++|++.+..+++.+++++++.++..+
T Consensus 213 le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~ 291 (368)
T 3uk6_A 213 LESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIG 291 (368)
T ss_dssp TTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred hhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 46776665 455554 57889999999999999999999999999999999899999999999999999
Q ss_pred C-CCHHHHHHHHHHHHHh----CCCCcchhhHHhhhh
Q psy4285 69 D-GDMRKVLNILQSAATA----HADEVNEDTIFTLLV 100 (533)
Q Consensus 69 ~-g~~r~a~~~l~~~~~~----~~~~i~~~~i~~~~~ 100 (533)
. ||+|.++++++.+... ....|+.+.+.+.+.
T Consensus 292 ~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~ 328 (368)
T 3uk6_A 292 LETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYS 328 (368)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 9 9999999999997653 234688888766543
No 110
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.69 E-value=2.2e-07 Score=112.27 Aligned_cols=121 Identities=20% Similarity=0.266 Sum_probs=96.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDA 387 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~ 387 (533)
..++.||||||||++++.+|+.+ +..++.+++++......+.+.+....+. +..+++||++++..+.
T Consensus 647 ~~~l~GpaGtGKTe~vk~LA~~l------g~~~v~~nc~e~ld~~~lg~~~~g~~~~-------Gaw~~~DE~nr~~~ev 713 (2695)
T 4akg_A 647 GGCFFGPAGTGKTETVKAFGQNL------GRVVVVFNCDDSFDYQVLSRLLVGITQI-------GAWGCFDEFNRLDEKV 713 (2695)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT------TCCCEEEETTSSCCHHHHHHHHHHHHHH-------TCEEEEETTTSSCHHH
T ss_pred CCcccCCCCCCcHHHHHHHHHHh------CCcEEEEECCCCCChhHhhHHHHHHHhc-------CCEeeehhhhhcChHH
Confidence 37899999999999999999998 8888999999888877776665554433 3599999999999988
Q ss_pred HHHHHHH-------HHhc-------------CCCcEEEEEeCC----CCCCChhhhccceeeeecCCCHHHHHHHhhc
Q psy4285 388 QNALRRI-------IEKF-------------TTNVRFCIICNY----LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 388 ~~~Ll~~-------le~~-------------~~~~~~I~~~n~----~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~ 441 (533)
.+.+-.. +.+. .+++.+++|.|. ...+++++++||..+.+..|+.+.+.+++..
T Consensus 714 Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~ 791 (2695)
T 4akg_A 714 LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQ 791 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHHH
Confidence 7776333 3221 345678888883 4579999999999999999999999888644
No 111
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.64 E-value=3.8e-07 Score=91.58 Aligned_cols=112 Identities=11% Similarity=0.112 Sum_probs=71.2
Q ss_pred CceeEeCCCCCChHHHHHHH-HHHHccccccCcceEEecCCCCCchh-HHHHHHHHHHhccc-CCCCCcEEEEEeCCCCC
Q psy4285 307 PHLLFYGPPGTGKTTTILAC-ARKLYTKAQFNAMVLELNASDDRGIG-IVRDQIFQFASTKT-MHKSSYKLIILDEADAM 383 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~l-a~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~vliiDE~d~l 383 (533)
.|+|+.|+||| ||.+++++ ++.+ ... .+.....+...+.. .+++..+ +..... ...+...++++||++.+
T Consensus 240 ihVLL~G~PGt-KS~Lar~i~~~i~-pR~----~ft~g~~ss~~gLt~s~r~~tG-~~~~~G~l~LAdgGvl~lDEIn~~ 312 (506)
T 3f8t_A 240 LHVLLAGYPVV-CSEILHHVLDHLA-PRG----VYVDLRRTELTDLTAVLKEDRG-WALRAGAAVLADGGILAVDHLEGA 312 (506)
T ss_dssp CCEEEESCHHH-HHHHHHHHHHHTC-SSE----EEEEGGGCCHHHHSEEEEESSS-EEEEECHHHHTTTSEEEEECCTTC
T ss_pred eeEEEECCCCh-HHHHHHHHHHHhC-CCe----EEecCCCCCccCceEEEEcCCC-cccCCCeeEEcCCCeeehHhhhhC
Confidence 37999999999 99999999 6643 111 11111111000000 0000000 000000 00134679999999999
Q ss_pred CHHHHHHHHHHHHhc---------CCCcEEEEEeCCCC-----------CCChhhhccceee
Q psy4285 384 TNDAQNALRRIIEKF---------TTNVRFCIICNYLS-----------KIPPAIQSRCTRF 425 (533)
Q Consensus 384 ~~~~~~~Ll~~le~~---------~~~~~~I~~~n~~~-----------~l~~~l~sR~~~i 425 (533)
+...+.+|++.||+. +..+.+|.++|... .+++++++||+.+
T Consensus 313 ~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi 374 (506)
T 3f8t_A 313 PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLI 374 (506)
T ss_dssp CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEE
T ss_pred CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeE
Confidence 999999999999963 56788999999764 7899999999543
No 112
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.63 E-value=1.1e-07 Score=99.67 Aligned_cols=96 Identities=24% Similarity=0.403 Sum_probs=82.8
Q ss_pred ceEEEEEcCCCC-cCchhhhccceeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy4285 7 NVRFCIICNYLS-KITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQSAATA 85 (533)
Q Consensus 7 ~~~~il~~~~~~-~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~~~~~~ 85 (533)
++.+|++||... ..++++++||+.++|++|+.+++.++|.+++.++++.++++++..|+..++||+|.+++.|+.++.
T Consensus 179 ~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~~~~~- 257 (516)
T 1sxj_A 179 STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTIST- 257 (516)
T ss_dssp SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTHHHH-
T ss_pred CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHh-
Confidence 345777776554 678999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCcchhhHHhhhhhhc
Q psy4285 86 HADEVNEDTIFTLLVSRV 103 (533)
Q Consensus 86 ~~~~i~~~~i~~~~~~~~ 103 (533)
....|+.+.+.+++..|.
T Consensus 258 ~~~~It~~~v~~~~~~~~ 275 (516)
T 1sxj_A 258 TTKTINHENINEISKAWE 275 (516)
T ss_dssp HSSCCCTTHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHhhc
Confidence 445688888877666554
No 113
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.60 E-value=1.4e-08 Score=98.91 Aligned_cols=97 Identities=21% Similarity=0.216 Sum_probs=53.9
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHc-cccccCcceEEecCCCCCchhHHHHHHHHHHh--cccCC--CCCcEEEEEeCCC
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLY-TKAQFNAMVLELNASDDRGIGIVRDQIFQFAS--TKTMH--KSSYKLIILDEAD 381 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~vliiDE~d 381 (533)
.+++|+||||||||++|.++++.+. .. +..+..++.++. +.+....+.. ..... -...++|||||++
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~---g~~v~~~~~~~l-----~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig 224 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKK---GVSTTLLHFPSF-----AIDVKNAISNGSVKEEIDAVKNVPVLILDDIG 224 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHS---CCCEEEEEHHHH-----HHHHHCCCC----CCTTHHHHTSSEEEEETCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhc---CCcEEEEEHHHH-----HHHHHHHhccchHHHHHHHhcCCCEEEEcCCC
Confidence 4699999999999999999999885 33 334443333210 1110000000 00000 0135699999997
Q ss_pred CCC--HHHHHHHHH-HHHhc-CCCcEEEEEeCCC
Q psy4285 382 AMT--NDAQNALRR-IIEKF-TTNVRFCIICNYL 411 (533)
Q Consensus 382 ~l~--~~~~~~Ll~-~le~~-~~~~~~I~~~n~~ 411 (533)
... .+.+..|+. +++.. ..+..+|+|||.+
T Consensus 225 ~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~ 258 (308)
T 2qgz_A 225 AEQATSWVRDEVLQVILQYRMLEELPTFFTSNYS 258 (308)
T ss_dssp C------CTTTTHHHHHHHHHHHTCCEEEEESSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 653 333443443 66543 3456899999854
No 114
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.54 E-value=2.4e-07 Score=112.53 Aligned_cols=128 Identities=19% Similarity=0.265 Sum_probs=92.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcc----------cCCCCCcEEEEE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK----------TMHKSSYKLIIL 377 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~vlii 377 (533)
++||+||||||||.++......+ .+..++.++.+.......+.+.+....... +...+++.|+||
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~l-----~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFi 1380 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRAF-----PDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFC 1380 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGGC-----TTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHhC-----CCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEe
Confidence 69999999999998876554433 134567788877777666666554422111 100144679999
Q ss_pred eCCCCCCH------HHHHHHHHHHHhc------------CCCcEEEEEeCCC-----CCCChhhhccceeeeecCCCHHH
Q psy4285 378 DEADAMTN------DAQNALRRIIEKF------------TTNVRFCIICNYL-----SKIPPAIQSRCTRFRFGPLDSSL 434 (533)
Q Consensus 378 DE~d~l~~------~~~~~Ll~~le~~------------~~~~~~I~~~n~~-----~~l~~~l~sR~~~i~~~~~~~~~ 434 (533)
||+++-.. ...+.|.+++|.. ..++.+|+++|.+ ..++++++|||..+.++.|+.++
T Consensus 1381 DDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~i~~ps~es 1460 (3245)
T 3vkg_A 1381 DEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSS 1460 (3245)
T ss_dssp TTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEECCCCCHHH
T ss_pred cccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEEeCCCCHHH
Confidence 99988654 3567778888742 2457789999977 36999999999999999999999
Q ss_pred HHHHhh
Q psy4285 435 IMSRLD 440 (533)
Q Consensus 435 ~~~~l~ 440 (533)
+..+..
T Consensus 1461 L~~If~ 1466 (3245)
T 3vkg_A 1461 LTQIYG 1466 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998844
No 115
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.51 E-value=6.3e-08 Score=87.57 Aligned_cols=118 Identities=10% Similarity=0.163 Sum_probs=67.1
Q ss_pred eeEeCCCCCChHHHHHHHHHHHcc--ccccC-cceEEecCCCCC--c---------------hhHHHHHHHHHHhcccCC
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYT--KAQFN-AMVLELNASDDR--G---------------IGIVRDQIFQFASTKTMH 368 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~--~~~~~-~~~~~~~~~~~~--~---------------~~~~~~~~~~~~~~~~~~ 368 (533)
.+++|+||+|||+.|..++..... ....+ ..++..+..+.. . .....+....+...+
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~--- 84 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP--- 84 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG---
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc---
Confidence 689999999999999887655420 00012 333222222110 0 000001111221111
Q ss_pred CCCcEEEEEeCCCCCCH---HH--HHHHHHHHHh-cCCCcEEEEEeCCCCCCChhhhccce-eeeecC
Q psy4285 369 KSSYKLIILDEADAMTN---DA--QNALRRIIEK-FTTNVRFCIICNYLSKIPPAIQSRCT-RFRFGP 429 (533)
Q Consensus 369 ~~~~~vliiDE~d~l~~---~~--~~~Ll~~le~-~~~~~~~I~~~n~~~~l~~~l~sR~~-~i~~~~ 429 (533)
.+...||||||++.+.+ +. ...++..++. ......+|++|+.+..++.++++|+. .+++.+
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~ 152 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIAS 152 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEE
T ss_pred ccCceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcC
Confidence 13467999999999832 11 1134444443 34567899999999999999999984 566655
No 116
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.48 E-value=4.2e-07 Score=90.08 Aligned_cols=69 Identities=12% Similarity=0.169 Sum_probs=48.4
Q ss_pred cEEEEEeCCCCCCH-------HHHHHHHHHHHhcCCCcEEEEEeCCCC---------CCChhhhccc-eeeeecCCCHHH
Q psy4285 372 YKLIILDEADAMTN-------DAQNALRRIIEKFTTNVRFCIICNYLS---------KIPPAIQSRC-TRFRFGPLDSSL 434 (533)
Q Consensus 372 ~~vliiDE~d~l~~-------~~~~~Ll~~le~~~~~~~~I~~~n~~~---------~l~~~l~sR~-~~i~~~~~~~~~ 434 (533)
+.+|+|||++.+.. +....|...++.. .++.+|+++.... ....++..|. ..+.+.|++.++
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e 207 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDT 207 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHH
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHH
Confidence 57999999999864 4445555555553 4788888886431 2233455455 589999999999
Q ss_pred HHHHhhc
Q psy4285 435 IMSRLDY 441 (533)
Q Consensus 435 ~~~~l~~ 441 (533)
..+.+.+
T Consensus 208 ~~~~l~~ 214 (350)
T 2qen_A 208 SVEFLKR 214 (350)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988865
No 117
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.46 E-value=5.9e-07 Score=89.24 Aligned_cols=69 Identities=16% Similarity=0.288 Sum_probs=48.0
Q ss_pred cEEEEEeCCCCCCH----HHHHHHHHHHHhcCCCcEEEEEeCCCC---------CCChhhhccc-eeeeecCCCHHHHHH
Q psy4285 372 YKLIILDEADAMTN----DAQNALRRIIEKFTTNVRFCIICNYLS---------KIPPAIQSRC-TRFRFGPLDSSLIMS 437 (533)
Q Consensus 372 ~~vliiDE~d~l~~----~~~~~Ll~~le~~~~~~~~I~~~n~~~---------~l~~~l~sR~-~~i~~~~~~~~~~~~ 437 (533)
+.+|+|||++.+.. +....|....+.. .++.+|++++... ....++..|+ ..+.+.|++.++..+
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~ 216 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIE 216 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHH
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHH
Confidence 67999999999753 2334454455543 4688888887532 2223455565 689999999999998
Q ss_pred Hhhc
Q psy4285 438 RLDY 441 (533)
Q Consensus 438 ~l~~ 441 (533)
.+.+
T Consensus 217 ~l~~ 220 (357)
T 2fna_A 217 FLRR 220 (357)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 118
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.42 E-value=6.1e-07 Score=92.55 Aligned_cols=117 Identities=16% Similarity=0.157 Sum_probs=73.8
Q ss_pred hchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHH-------HHH
Q psy4285 289 ESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQI-------FQF 361 (533)
Q Consensus 289 ~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 361 (533)
+|..++..+..++..+. +++++.||||||||+++.+++..+.... ...++.+ +.+......+++.+ ..+
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~~--~~~il~~-a~T~~Aa~~l~~~~~~~~~T~h~~ 104 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALISTG--ETGIILA-APTHAAKKILSKLSGKEASTIHSI 104 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHTT--CCCEEEE-ESSHHHHHHHHHHHSSCEEEHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhcC--CceEEEe-cCcHHHHHHHHhhhccchhhHHHH
Confidence 45555555555555443 3799999999999999999999886553 1123333 33333333333322 111
Q ss_pred Hhcc--------------cCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q psy4285 362 ASTK--------------TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412 (533)
Q Consensus 362 ~~~~--------------~~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~ 412 (533)
.... .......+++||||+++++......|++.+. .+..++++++...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 105 LKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp HTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred hccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 1110 0011357899999999999998888888773 5678899886443
No 119
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.34 E-value=1.7e-06 Score=76.77 Aligned_cols=68 Identities=18% Similarity=0.337 Sum_probs=47.9
Q ss_pred CCcEEEEEeCC---CCCCHHHHHHHHHHHHhcCCCcEEEEEeC--CCCCCChhhhcc--ceeeeecCCCHHHHHHHh
Q psy4285 370 SSYKLIILDEA---DAMTNDAQNALRRIIEKFTTNVRFCIICN--YLSKIPPAIQSR--CTRFRFGPLDSSLIMSRL 439 (533)
Q Consensus 370 ~~~~vliiDE~---d~l~~~~~~~Ll~~le~~~~~~~~I~~~n--~~~~l~~~l~sR--~~~i~~~~~~~~~~~~~l 439 (533)
..++++++||+ ..++...+..+.+.+++ .+..+|+++. ....+...+.+| +..+.+.+.+.+++...+
T Consensus 98 ~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l 172 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDI 172 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHH
T ss_pred cCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHH
Confidence 35689999995 45577888999999976 3455777773 344556677777 678888877766555443
No 120
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.33 E-value=3.6e-06 Score=102.52 Aligned_cols=121 Identities=18% Similarity=0.252 Sum_probs=96.9
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 388 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~ 388 (533)
..+.||+|||||++++.+|+.+ +..++.+++++......+.+.+...++. +.-.++||++++..+..
T Consensus 607 g~~~GPaGtGKTet~k~La~~l------gr~~~vfnC~~~~d~~~~g~i~~G~~~~-------GaW~cfDEfNrl~~~vL 673 (3245)
T 3vkg_A 607 GNPFGPAGTGKTETVKALGSQL------GRFVLVFCCDEGFDLQAMSRIFVGLCQC-------GAWGCFDEFNRLEERIL 673 (3245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT------TCCEEEEECSSCCCHHHHHHHHHHHHHH-------TCEEEEETTTSSCHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHh------CCeEEEEeCCCCCCHHHHHHHHhhHhhc-------CcEEEehhhhcCCHHHH
Confidence 4789999999999999999998 7888999999888777776665555433 34779999999999887
Q ss_pred HHHHHHHH-------h--------------cCCCcEEEEEeCC----CCCCChhhhccceeeeecCCCHHHHHHHhhcC
Q psy4285 389 NALRRIIE-------K--------------FTTNVRFCIICNY----LSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYD 442 (533)
Q Consensus 389 ~~Ll~~le-------~--------------~~~~~~~I~~~n~----~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~ 442 (533)
+.+.+.+. . ..+++.+++|.|. ...+++++++||..+.+..|+.+.+.+++...
T Consensus 674 Svv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L~s 752 (3245)
T 3vkg_A 674 SAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYS 752 (3245)
T ss_dssp HHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHHHHH
Confidence 77666543 1 1245778888884 45899999999999999999999999986554
No 121
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.30 E-value=2.9e-06 Score=79.07 Aligned_cols=91 Identities=12% Similarity=0.230 Sum_probs=77.4
Q ss_pred EEEEEcCCCC----cCchhhhccc---eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q psy4285 9 RFCIICNYLS----KITPAIQSRC---TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQS 81 (533)
Q Consensus 9 ~~il~~~~~~----~i~~~i~SRc---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~~ 81 (533)
++|++|+... .+.+.++||| .++.|++|+.+++.+++.+.+...++.++++.++.++..++||+|.+.+.++.
T Consensus 140 ~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~ 219 (242)
T 3bos_A 140 SLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDR 219 (242)
T ss_dssp EEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred eEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 5777776444 4569999999 99999999999999999999988889999999999999999999999999998
Q ss_pred HHHhC---CCCcchhhHHhhh
Q psy4285 82 AATAH---ADEVNEDTIFTLL 99 (533)
Q Consensus 82 ~~~~~---~~~i~~~~i~~~~ 99 (533)
+.... +..|+.+.+.+++
T Consensus 220 ~~~~a~~~~~~It~~~v~~~l 240 (242)
T 3bos_A 220 LDKASMVHQRKLTIPFVKEML 240 (242)
T ss_dssp HHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHh
Confidence 86542 4458888876544
No 122
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.28 E-value=4.1e-06 Score=82.55 Aligned_cols=95 Identities=12% Similarity=0.145 Sum_probs=81.1
Q ss_pred ceEEEEEcCCCCcCchhhhccce-eEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy4285 7 NVRFCIICNYLSKITPAIQSRCT-RFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQSAATA 85 (533)
Q Consensus 7 ~~~~il~~~~~~~i~~~i~SRc~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~~~~~~ 85 (533)
.+.++.+++.+..+.++++|||. .+.|.+++.+++.++|++.+...++.++++++..|+..++||+|.|+++|+.+...
T Consensus 150 ~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~ 229 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDM 229 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 46677789999999999999995 68999999999999999999888899999999999999999999999999876432
Q ss_pred ----CCCCcchhhHHhhhhh
Q psy4285 86 ----HADEVNEDTIFTLLVS 101 (533)
Q Consensus 86 ----~~~~i~~~~i~~~~~~ 101 (533)
....||.+.+.+.+..
T Consensus 230 a~~~~~~~It~~~v~~al~~ 249 (334)
T 1in4_A 230 LTVVKADRINTDIVLKTMEV 249 (334)
T ss_dssp HHHHTCSSBCHHHHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHHH
Confidence 2346888877665543
No 123
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.24 E-value=1.3e-06 Score=93.11 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=63.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHh-----------------ccc----
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS-----------------TKT---- 366 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~---- 366 (533)
.++++|||||||||++..+...+.........-+.+.+++......+.+.++.... +.+
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~~~~~~~~~Tih~ll~ 245 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLG 245 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTTSCC-
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHHhccchhhhhhHhhhc
Confidence 58999999999999999988877431100111233444444444444443332100 000
Q ss_pred ------------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCC
Q psy4285 367 ------------MHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411 (533)
Q Consensus 367 ------------~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~ 411 (533)
......++|||||+++++......|++.+ +.+.++|+.++..
T Consensus 246 ~~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~~~~~Ll~~l---~~~~~liLvGD~~ 299 (608)
T 1w36_D 246 AQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL---PDHARVIFLGDRD 299 (608)
T ss_dssp ----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTC---CTTCEEEEEECTT
T ss_pred cCCCchHHHhccCCCCCCCEEEEechhhCCHHHHHHHHHhC---CCCCEEEEEcchh
Confidence 00124679999999999977766676655 6778999999654
No 124
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.22 E-value=4.5e-07 Score=81.08 Aligned_cols=106 Identities=12% Similarity=0.146 Sum_probs=59.9
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCC-CCC-chhHHHHH------------HHHHHhcccCCCCCcEE
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNAS-DDR-GIGIVRDQ------------IFQFASTKTMHKSSYKL 374 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~-~~~-~~~~~~~~------------~~~~~~~~~~~~~~~~v 374 (533)
.+++||||+||||++..++..+...+ ..++.+.+. +.+ +...+... ...+... .....++
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g---~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~---~~~~~dv 79 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGK---KKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKY---IEEDTRG 79 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---CEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGG---CCTTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHH---hcCCCCE
Confidence 68999999999999987777664332 222222111 000 00000000 0001110 1135789
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeC------CCCCCChhhhccce
Q psy4285 375 IILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN------YLSKIPPAIQSRCT 423 (533)
Q Consensus 375 liiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n------~~~~l~~~l~sR~~ 423 (533)
|+|||++.++++....|..+.++ +..+|+++. .+....+.++++.+
T Consensus 80 viIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad 131 (184)
T 2orw_A 80 VFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLAD 131 (184)
T ss_dssp EEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCS
T ss_pred EEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhh
Confidence 99999999987777777767764 567887774 33344566777664
No 125
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.20 E-value=4.5e-06 Score=82.41 Aligned_cols=93 Identities=13% Similarity=0.108 Sum_probs=80.9
Q ss_pred ceEEEEEcCCCCcCchhhhccc-eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q psy4285 7 NVRFCIICNYLSKITPAIQSRC-TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQSAATA 85 (533)
Q Consensus 7 ~~~~il~~~~~~~i~~~i~SRc-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~~~~~~ 85 (533)
+++||.+||....+.|+|+||| .++.|++|+.+++..++.+.+...++.+++++++.++..+.||+|.+.+.++.+...
T Consensus 154 ~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 233 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDF 233 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4889999999999999999999 999999999999999999999888888999999999999999999999999986432
Q ss_pred ---C-CCCcchhhHHhhh
Q psy4285 86 ---H-ADEVNEDTIFTLL 99 (533)
Q Consensus 86 ---~-~~~i~~~~i~~~~ 99 (533)
. ...|+.+.+...+
T Consensus 234 a~~~~~~~i~~~~~~~~~ 251 (338)
T 3pfi_A 234 ADVNDEEIITEKRANEAL 251 (338)
T ss_dssp HHHTTCSEECHHHHHHHH
T ss_pred HHhhcCCccCHHHHHHHH
Confidence 1 3347777765443
No 126
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.20 E-value=6.8e-06 Score=80.52 Aligned_cols=93 Identities=12% Similarity=0.054 Sum_probs=81.2
Q ss_pred CceEEEEEcCCCCcCchhhhccc-eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy4285 6 TNVRFCIICNYLSKITPAIQSRC-TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQSAAT 84 (533)
Q Consensus 6 ~~~~~il~~~~~~~i~~~i~SRc-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~~~~~ 84 (533)
.++++|.+||....+.+++.||| .++.|++|+.+++..++.+.+...++.+++++++.++..+.|++|.+.++++.+..
T Consensus 137 ~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 137 PRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRD 216 (324)
T ss_dssp CCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTT
T ss_pred CCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 46889999999999999999999 69999999999999999999988888999999999999999999999999998865
Q ss_pred hC----CCCcchhhHHhh
Q psy4285 85 AH----ADEVNEDTIFTL 98 (533)
Q Consensus 85 ~~----~~~i~~~~i~~~ 98 (533)
.. ...|+.+.+...
T Consensus 217 ~a~~~~~~~i~~~~~~~~ 234 (324)
T 1hqc_A 217 FAQVAGEEVITRERALEA 234 (324)
T ss_dssp TSTTTSCSCCCHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHH
Confidence 33 234777666543
No 127
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=98.12 E-value=1.8e-05 Score=70.45 Aligned_cols=107 Identities=14% Similarity=0.129 Sum_probs=65.9
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCC-CCch-----------------------------hHHHH
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD-DRGI-----------------------------GIVRD 356 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~~~-----------------------------~~~~~ 356 (533)
+.+++++++|.||||+|-.+|....+.+ ....++.+.... ..+. .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G-~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHG-KNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTT-CCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4699999999999999999998886653 222222221110 0000 01111
Q ss_pred HHHHHHhcccCCCCCcEEEEEeCC------CCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccc
Q psy4285 357 QIFQFASTKTMHKSSYKLIILDEA------DAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRC 422 (533)
Q Consensus 357 ~~~~~~~~~~~~~~~~~vliiDE~------d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~ 422 (533)
........ .....+++||+||+ +.++.+ .+++++...+.+..+|+|+|... +.|....
T Consensus 108 ~l~~a~~~--l~~~~yDlvILDEi~~al~~g~l~~~---ev~~~l~~Rp~~~~vIlTGr~ap---~~l~e~A 171 (196)
T 1g5t_A 108 VWQHGKRM--LADPLLDMVVLDELTYMVAYDYLPLE---EVISALNARPGHQTVIITGRGCH---RDILDLA 171 (196)
T ss_dssp HHHHHHHH--TTCTTCSEEEEETHHHHHHTTSSCHH---HHHHHHHTSCTTCEEEEECSSCC---HHHHHHC
T ss_pred HHHHHHHH--HhcCCCCEEEEeCCCccccCCCCCHH---HHHHHHHhCcCCCEEEEECCCCc---HHHHHhC
Confidence 11111111 11356899999999 445444 58888998899999999999764 4555443
No 128
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.11 E-value=9.7e-06 Score=77.83 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=20.0
Q ss_pred eeEeCCCCCChHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~ 329 (533)
++|+||||||||++|..++..
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 799999999999999999987
No 129
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.11 E-value=7.6e-06 Score=83.68 Aligned_cols=97 Identities=15% Similarity=0.150 Sum_probs=80.9
Q ss_pred CceEEEEEcCC-CCc---Cchhhhccc---eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHH
Q psy4285 6 TNVRFCIICNY-LSK---ITPAIQSRC---TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNI 78 (533)
Q Consensus 6 ~~~~~il~~~~-~~~---i~~~i~SRc---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~ 78 (533)
.+..+|++|+. +.. +.+.|+||| +++.|.+|+.++...+|++.+...++.+++++++.|+..++||+|.+.+.
T Consensus 226 ~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 226 SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 34567777765 443 889999999 79999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHh---CCCCcchhhHHhhhhhh
Q psy4285 79 LQSAATA---HADEVNEDTIFTLLVSR 102 (533)
Q Consensus 79 l~~~~~~---~~~~i~~~~i~~~~~~~ 102 (533)
|+.+... .+..||.+.+.+.+...
T Consensus 306 L~~~~~~a~~~~~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 306 IIKLLVYKETTGKEVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHHHHHSSSCCCHHHHHHHTSTT
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9988653 24458888877666543
No 130
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.09 E-value=1.6e-05 Score=79.71 Aligned_cols=94 Identities=22% Similarity=0.265 Sum_probs=79.1
Q ss_pred CceEEEEEcCCC---CcCchhhhcc-ceeEEeCCCCHHHHHHHHHHHHhh--cCCCCCHHHHHHHHHhcC---CCHHHHH
Q psy4285 6 TNVRFCIICNYL---SKITPAIQSR-CTRFRFGPLDSSLIMSRLDYVIEQ--EKVNVTPDGKKAIIDLSD---GDMRKVL 76 (533)
Q Consensus 6 ~~~~~il~~~~~---~~i~~~i~SR-c~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~---g~~r~a~ 76 (533)
.+++||++||.. ..+.++++|| |..+.|+|++.+++.+++.+.+.. .+..+++++++.+++.++ ||+|.|+
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~ 242 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAV 242 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHH
T ss_pred cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHH
Confidence 578899999987 7899999999 689999999999999999988764 345788999999999998 9999999
Q ss_pred HHHHHHHHhCC--CCcchhhHHhhh
Q psy4285 77 NILQSAATAHA--DEVNEDTIFTLL 99 (533)
Q Consensus 77 ~~l~~~~~~~~--~~i~~~~i~~~~ 99 (533)
++++.+..... ..|+.+.+.+.+
T Consensus 243 ~~l~~a~~~a~~~~~i~~~~v~~~~ 267 (384)
T 2qby_B 243 NLLFRAAQLASGGGIIRKEHVDKAI 267 (384)
T ss_dssp HHHHHHHHHTTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccCHHHHHHHH
Confidence 99999876442 357877775543
No 131
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.07 E-value=8.1e-06 Score=79.01 Aligned_cols=82 Identities=10% Similarity=0.099 Sum_probs=66.2
Q ss_pred CCCceEEEEEcCCCC----cCchhhhccc--eeEEeCCCCHHHHHHHHHHHHhhc--C----------------------
Q psy4285 4 FTTNVRFCIICNYLS----KITPAIQSRC--TRFRFGPLDSSLIMSRLDYVIEQE--K---------------------- 53 (533)
Q Consensus 4 ~~~~~~~il~~~~~~----~i~~~i~SRc--~~~~~~~~~~~~~~~~l~~~~~~~--~---------------------- 53 (533)
+..++.+|+++|... .+.+.++||| .++.|+|++.+++.++|++.+... +
T Consensus 160 ~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 239 (318)
T 3te6_A 160 KNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQN 239 (318)
T ss_dssp SSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC-----
T ss_pred cCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 345677888887653 3667889998 689999999999999998887542 1
Q ss_pred -----------CCCCHHHHHHHHH---hcCCCHHHHHHHHHHHHHh
Q psy4285 54 -----------VNVTPDGKKAIID---LSDGDMRKVLNILQSAATA 85 (533)
Q Consensus 54 -----------~~~~~~~~~~~~~---~~~g~~r~a~~~l~~~~~~ 85 (533)
+.+++++++.+++ .++||+|+|+++|+.+...
T Consensus 240 ~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ 285 (318)
T 3te6_A 240 QKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEI 285 (318)
T ss_dssp ---CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred ccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 1368999999998 6899999999999998753
No 132
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.02 E-value=2.1e-06 Score=83.66 Aligned_cols=84 Identities=14% Similarity=0.222 Sum_probs=73.6
Q ss_pred CCCCCCceEEEEEcCCCC-----cCchhhhccc-eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhc------
Q psy4285 1 IEKFTTNVRFCIICNYLS-----KITPAIQSRC-TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLS------ 68 (533)
Q Consensus 1 ~E~~~~~~~~il~~~~~~-----~i~~~i~SRc-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------ 68 (533)
||+++.++++|+++|+.. .+.|+|+||| ..+.|++|+.+++.+++++.+.+.++.++++++..++..+
T Consensus 163 l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (309)
T 3syl_A 163 MENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQ 242 (309)
T ss_dssp HHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTS
T ss_pred HhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccC
Confidence 356678899999997543 4579999999 9999999999999999999999889999999999998864
Q ss_pred --CCCHHHHHHHHHHHHH
Q psy4285 69 --DGDMRKVLNILQSAAT 84 (533)
Q Consensus 69 --~g~~r~a~~~l~~~~~ 84 (533)
.||+|.+.++++.+..
T Consensus 243 ~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 243 PHFANARSIRNALDRARL 260 (309)
T ss_dssp SSCCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 4999999999999875
No 133
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.01 E-value=1.8e-05 Score=79.32 Aligned_cols=95 Identities=21% Similarity=0.341 Sum_probs=77.8
Q ss_pred CCceEEEEEcCCC---CcCchhhhccc--eeEEeCCCCHHHHHHHHHHHHhh--cCCCCCHHHHHHHHHhcC---CCHHH
Q psy4285 5 TTNVRFCIICNYL---SKITPAIQSRC--TRFRFGPLDSSLIMSRLDYVIEQ--EKVNVTPDGKKAIIDLSD---GDMRK 74 (533)
Q Consensus 5 ~~~~~~il~~~~~---~~i~~~i~SRc--~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~---g~~r~ 74 (533)
+.++.+|++||.. ..+.++++||| ..+.|++++.+++.+++.+.+.. .+..+++++++.+++.++ ||+|.
T Consensus 165 ~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~ 244 (387)
T 2v1u_A 165 RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARR 244 (387)
T ss_dssp ---CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHH
T ss_pred CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHH
Confidence 5678899999887 78999999999 78999999999999999988765 456788999999999998 99999
Q ss_pred HHHHHHHHHHh----CCCCcchhhHHhhh
Q psy4285 75 VLNILQSAATA----HADEVNEDTIFTLL 99 (533)
Q Consensus 75 a~~~l~~~~~~----~~~~i~~~~i~~~~ 99 (533)
++++++.+... ....|+.+.+.+.+
T Consensus 245 ~~~~l~~a~~~a~~~~~~~i~~~~v~~a~ 273 (387)
T 2v1u_A 245 ALDLLRVAGEIAERRREERVRREHVYSAR 273 (387)
T ss_dssp HHHHHHHHHHHHHHTTCSCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 99999998653 22457877765543
No 134
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.98 E-value=1.4e-05 Score=72.73 Aligned_cols=128 Identities=13% Similarity=0.201 Sum_probs=75.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcc-------------cC----CCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK-------------TM----HKS 370 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~----~~~ 370 (533)
++++.|+||+||||++..+|..+...+ +...+..++... ... ............ .. ...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G-~~V~v~d~D~q~--~~~-~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~ 83 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG-VRVMAGVVETHG--RAE-TEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKA 83 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT-CCEEEEECCCTT--CHH-HHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC-CCEEEEEeCCCC--Chh-HHHHhcCccccCcceeecCCcccccccHHHHHhc
Confidence 489999999999999999999885442 222233333210 000 000000000000 00 002
Q ss_pred CcEEEEEeCCCCCCHH------HHHHHHHHHHhcCCCcEEEEEeCCC------------------CCCChhhhccceeee
Q psy4285 371 SYKLIILDEADAMTND------AQNALRRIIEKFTTNVRFCIICNYL------------------SKIPPAIQSRCTRFR 426 (533)
Q Consensus 371 ~~~vliiDE~d~l~~~------~~~~Ll~~le~~~~~~~~I~~~n~~------------------~~l~~~l~sR~~~i~ 426 (533)
.+++++|||+.+.+.. ....+...+ +....++.|+|.. +.++..+..++..+.
T Consensus 84 ~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l---~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~ 160 (228)
T 2r8r_A 84 APSLVLVDELAHTNAPGSRHTKRWQDIQELL---AAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLV 160 (228)
T ss_dssp CCSEEEESCTTCBCCTTCSSSBHHHHHHHHH---HTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEE
T ss_pred CCCEEEEeCCCCCCcccchhHHHHHHHHHHH---cCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEE
Confidence 4679999999875321 222222233 4556788888721 356777888888888
Q ss_pred ecCCCHHHHHHHhhcC
Q psy4285 427 FGPLDSSLIMSRLDYD 442 (533)
Q Consensus 427 ~~~~~~~~~~~~l~~~ 442 (533)
+-..+++++.+++..=
T Consensus 161 lvD~~p~~l~~rl~~g 176 (228)
T 2r8r_A 161 LIDLPPRELLERLRDG 176 (228)
T ss_dssp EBCCCHHHHHHHHHTT
T ss_pred EecCCHHHHHHHHHCC
Confidence 8888888899988763
No 135
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.91 E-value=4.7e-05 Score=76.40 Aligned_cols=94 Identities=18% Similarity=0.243 Sum_probs=77.8
Q ss_pred CceEEEEEcCCC---CcCchhhhccce--eEEeCCCCHHHHHHHHHHHHhh--cCCCCCHHHHHHHHHhc---------C
Q psy4285 6 TNVRFCIICNYL---SKITPAIQSRCT--RFRFGPLDSSLIMSRLDYVIEQ--EKVNVTPDGKKAIIDLS---------D 69 (533)
Q Consensus 6 ~~~~~il~~~~~---~~i~~~i~SRc~--~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~---------~ 69 (533)
.++.+|++||.+ ..+.++++|||. .+.|+|++.+++.+++.+.+.. ....+++++++.++..+ +
T Consensus 158 ~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNR 237 (389)
T ss_dssp CCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTS
T ss_pred CCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCC
Confidence 588999999988 789999999997 6999999999999999988764 22368899999999999 8
Q ss_pred CCHHHHHHHHHHHHHh----CCCCcchhhHHhhh
Q psy4285 70 GDMRKVLNILQSAATA----HADEVNEDTIFTLL 99 (533)
Q Consensus 70 g~~r~a~~~l~~~~~~----~~~~i~~~~i~~~~ 99 (533)
||+|.++++++.+... ....++.+.+...+
T Consensus 238 G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~ 271 (389)
T 1fnn_A 238 GDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSS 271 (389)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence 9999999999987653 23457777765543
No 136
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.90 E-value=4.2e-05 Score=70.08 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=54.1
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCC---C-------Cc-------hhHHHHHHHHHHhcccCCCCC
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD---D-------RG-------IGIVRDQIFQFASTKTMHKSS 371 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~---~-------~~-------~~~~~~~~~~~~~~~~~~~~~ 371 (533)
++++||||+||||++..++..+...+ ..++.+.+.. + .+ .....+......... ....
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g---~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~--~~~~ 89 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYAD---VKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNS--FNDE 89 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT--SCTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHh--hCCC
Confidence 78999999999999999998875442 1222221110 0 00 001112222111111 1235
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeC
Q psy4285 372 YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409 (533)
Q Consensus 372 ~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n 409 (533)
+++|+|||+..++.+....+..+.+ .++.+|+++.
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl 124 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGL 124 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECC
T ss_pred CCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEec
Confidence 7899999999998776555544443 2688999985
No 137
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.84 E-value=4.3e-05 Score=74.07 Aligned_cols=80 Identities=19% Similarity=0.266 Sum_probs=66.2
Q ss_pred CCCceEEEEE----cCCCCcCchhhhccce-eEEeCCCCHHHHHHHHHH-----------HHhhcC--CCCCHHHHHHHH
Q psy4285 4 FTTNVRFCII----CNYLSKITPAIQSRCT-RFRFGPLDSSLIMSRLDY-----------VIEQEK--VNVTPDGKKAII 65 (533)
Q Consensus 4 ~~~~~~~il~----~~~~~~i~~~i~SRc~-~~~~~~~~~~~~~~~l~~-----------~~~~~~--~~~~~~~~~~~~ 65 (533)
++.+++||.+ ++.+..+.|+++|||. .+.|++|+.+++.+++++ .+...+ +.+++++++.++
T Consensus 165 ~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~ 244 (310)
T 1ofh_A 165 KTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIA 244 (310)
T ss_dssp ECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHH
T ss_pred cCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHH
Confidence 3467888888 4577899999999995 699999999999999872 222344 358999999999
Q ss_pred Hhc--------CCCHHHHHHHHHHHH
Q psy4285 66 DLS--------DGDMRKVLNILQSAA 83 (533)
Q Consensus 66 ~~~--------~g~~r~a~~~l~~~~ 83 (533)
+.+ .||+|.+.++++.+.
T Consensus 245 ~~~~~~~~~~~~g~~R~l~~~l~~~~ 270 (310)
T 1ofh_A 245 EAAFRVNEKTENIGARRLHTVMERLM 270 (310)
T ss_dssp HHHHHHHHHSCCCTTHHHHHHHHHHS
T ss_pred HHhhhhcccccccCcHHHHHHHHHHH
Confidence 998 899999999999875
No 138
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.70 E-value=9.8e-05 Score=86.84 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=22.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTK 333 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~ 333 (533)
+++|+||||||||++|.+++.+....
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~ 1454 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQRE 1454 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 59999999999999999999886443
No 139
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.67 E-value=0.0002 Score=71.62 Aligned_cols=95 Identities=18% Similarity=0.282 Sum_probs=76.0
Q ss_pred CCCceEEEEEcCCC---CcCchhhhccc--eeEEeCCCCHHHHHHHHHHHHhhc--CCCCCHHHHHHHHHhcC---CCHH
Q psy4285 4 FTTNVRFCIICNYL---SKITPAIQSRC--TRFRFGPLDSSLIMSRLDYVIEQE--KVNVTPDGKKAIIDLSD---GDMR 73 (533)
Q Consensus 4 ~~~~~~~il~~~~~---~~i~~~i~SRc--~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~---g~~r 73 (533)
+..++.+|+++|.. ..+.+.++||| ..+.|+|++.+++.+++.+.+... ...++++.++.++..+. ||+|
T Consensus 160 ~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r 239 (386)
T 2qby_A 160 NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDAR 239 (386)
T ss_dssp CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHH
T ss_pred CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHH
Confidence 35678899999877 57889999999 799999999999999999876532 35688999999999998 9999
Q ss_pred HHHHHHHHHHHh----CCCCcchhhHHhh
Q psy4285 74 KVLNILQSAATA----HADEVNEDTIFTL 98 (533)
Q Consensus 74 ~a~~~l~~~~~~----~~~~i~~~~i~~~ 98 (533)
.++++++.+... ....|+.+.+...
T Consensus 240 ~~~~ll~~a~~~a~~~~~~~i~~~~v~~a 268 (386)
T 2qby_A 240 RALDLLRVSGEIAERMKDTKVKEEYVYMA 268 (386)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCccCHHHHHHH
Confidence 999999988653 2235787776543
No 140
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.66 E-value=0.00017 Score=70.43 Aligned_cols=77 Identities=5% Similarity=0.094 Sum_probs=67.5
Q ss_pred ceEEEEEcC-CCC---cCchhhhccc---eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q psy4285 7 NVRFCIICN-YLS---KITPAIQSRC---TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNIL 79 (533)
Q Consensus 7 ~~~~il~~~-~~~---~i~~~i~SRc---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l 79 (533)
+.++|++++ ++. .+.+.++||| .++.|+| +.++...+|++.+...++.+++++++.++..+ ||+|.+.+.|
T Consensus 131 ~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l 208 (324)
T 1l8q_A 131 EKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKI 208 (324)
T ss_dssp TCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHH
T ss_pred CCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHH
Confidence 345666665 433 6899999999 8999999 99999999999998889999999999999999 9999999999
Q ss_pred HHHHHh
Q psy4285 80 QSAATA 85 (533)
Q Consensus 80 ~~~~~~ 85 (533)
+.+...
T Consensus 209 ~~~~~~ 214 (324)
T 1l8q_A 209 KLIKLK 214 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 998764
No 141
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.51 E-value=0.00088 Score=71.22 Aligned_cols=62 Identities=13% Similarity=0.070 Sum_probs=35.8
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeee-ecCCCHHHHHHHhhcC
Q psy4285 371 SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFR-FGPLDSSLIMSRLDYD 442 (533)
Q Consensus 371 ~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~-~~~~~~~~~~~~l~~~ 442 (533)
++-+||+|+++.. . .++..+.++++|+||....... ........+. ..+++.++..+.+...
T Consensus 236 ~~~LLVLDdv~~~--~-------~l~~l~~~~~ilvTsR~~~~~~-~~~~~~~~v~~l~~L~~~ea~~L~~~~ 298 (591)
T 1z6t_A 236 PRSLLILDDVWDS--W-------VLKAFDSQCQILLTTRDKSVTD-SVMGPKYVVPVESSLGKEKGLEILSLF 298 (591)
T ss_dssp TTCEEEEEEECCH--H-------HHHTTCSSCEEEEEESCGGGGT-TCCSCEEEEECCSSCCHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCH--H-------HHHHhcCCCeEEEECCCcHHHH-hcCCCceEeecCCCCCHHHHHHHHHHH
Confidence 4579999999862 1 2333467789999986543111 1111111222 2478888887777654
No 142
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.47 E-value=0.00033 Score=70.40 Aligned_cols=79 Identities=14% Similarity=0.082 Sum_probs=69.3
Q ss_pred CCCceEEEEEcCCCCcCchhhhccce-eEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy4285 4 FTTNVRFCIICNYLSKITPAIQSRCT-RFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNILQSA 82 (533)
Q Consensus 4 ~~~~~~~il~~~~~~~i~~~i~SRc~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l~~~ 82 (533)
++.++++|.+||.+..+.++++|||. .+.|+.|+.++...+|+..+.+.+..++++.+..++..+.|..+.+++.|...
T Consensus 249 ~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~ 328 (389)
T 3vfd_A 249 GDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKD 328 (389)
T ss_dssp ---CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 46778999999999999999999995 79999999999999999999888888999999999999999998888766543
No 143
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.46 E-value=0.00024 Score=74.56 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=65.7
Q ss_pred CceEEEEEcCCCCcCchhhhccceeEEeCCCCHHHHHHHHHHHHh-----h-----cCCCCCHHHHHHHHHhcC--CCHH
Q psy4285 6 TNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIE-----Q-----EKVNVTPDGKKAIIDLSD--GDMR 73 (533)
Q Consensus 6 ~~~~~il~~~~~~~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~-----~-----~~~~~~~~~~~~~~~~~~--g~~r 73 (533)
.+++||.+||+++.+.|+++|||.+++|++|+.++..+++.+... . .++.++++++..++..+. |++|
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR 302 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVR 302 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSH
T ss_pred cceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchh
Confidence 678999999999999999999999999999999999988877541 2 245678999999877555 7889
Q ss_pred HHHHHHHHHHH
Q psy4285 74 KVLNILQSAAT 84 (533)
Q Consensus 74 ~a~~~l~~~~~ 84 (533)
...+.++.++.
T Consensus 303 ~L~~~i~~~~~ 313 (543)
T 3m6a_A 303 SLERQLAAICR 313 (543)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887654
No 144
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.45 E-value=0.00052 Score=67.91 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=68.5
Q ss_pred CCCCceEEEEEcCCCCcCchhhhccc-eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Q psy4285 3 KFTTNVRFCIICNYLSKITPAIQSRC-TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDG-DMRKVLNILQ 80 (533)
Q Consensus 3 ~~~~~~~~il~~~~~~~i~~~i~SRc-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~~r~a~~~l~ 80 (533)
+++.++++|.+||.+..+.|++++|| ..+.|+.|+.++..++|+..+...+..+++..+..|+..+.| +.+..-++++
T Consensus 183 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 183 NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp ---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45678999999999999999999999 789999999999999999888777767788899999999998 6666666666
Q ss_pred HHHH
Q psy4285 81 SAAT 84 (533)
Q Consensus 81 ~~~~ 84 (533)
.+..
T Consensus 263 ~A~~ 266 (355)
T 2qp9_X 263 DALM 266 (355)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 145
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.42 E-value=0.00012 Score=68.02 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
++++.||+|+|||.++..++..+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 48999999999999999888765
No 146
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.41 E-value=0.002 Score=58.73 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.7
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
++|+||||+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 147
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.41 E-value=0.00031 Score=73.99 Aligned_cols=126 Identities=13% Similarity=0.147 Sum_probs=66.8
Q ss_pred ceeEeCCCCCChHHHHHHHHH---HHccccccCcceEEecCCC-CCchhHHHHHHHHHHhcc------------------
Q psy4285 308 HLLFYGPPGTGKTTTILACAR---KLYTKAQFNAMVLELNASD-DRGIGIVRDQIFQFASTK------------------ 365 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~---~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------------ 365 (533)
.+.++|++|+||||+|+.+++ .-.........++.+.... ..........+..+....
T Consensus 154 vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~ 233 (549)
T 2a5y_B 154 FLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKR 233 (549)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHH
Confidence 478999999999999999996 2222211112223222211 001112222222221110
Q ss_pred ---cCCCCC-cEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecCCCHHHHHHHhhc
Q psy4285 366 ---TMHKSS-YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 366 ---~~~~~~-~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~ 441 (533)
.....+ .-+||+|+++..... .+ .. ..+.++|+||....- ......-...+.+.+++.++..+.+.+
T Consensus 234 ~l~~~L~~~kr~LlVLDdv~~~~~~---~~---~~--~~gs~ilvTTR~~~v-~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 304 (549)
T 2a5y_B 234 MICNALIDRPNTLFVFDDVVQEETI---RW---AQ--ELRLRCLVTTRDVEI-SNAASQTCEFIEVTSLEIDECYDFLEA 304 (549)
T ss_dssp HHHHHHTTSTTEEEEEEEECCHHHH---HH---HH--HTTCEEEEEESBGGG-GGGCCSCEEEEECCCCCHHHHHHHHHH
T ss_pred HHHHHHcCCCcEEEEEECCCCchhh---cc---cc--cCCCEEEEEcCCHHH-HHHcCCCCeEEECCCCCHHHHHHHHHH
Confidence 000233 679999999884221 11 11 156888988875331 111101114588889999998888877
Q ss_pred C
Q psy4285 442 D 442 (533)
Q Consensus 442 ~ 442 (533)
.
T Consensus 305 ~ 305 (549)
T 2a5y_B 305 Y 305 (549)
T ss_dssp T
T ss_pred H
Confidence 6
No 148
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.37 E-value=0.0032 Score=65.26 Aligned_cols=69 Identities=20% Similarity=0.244 Sum_probs=51.9
Q ss_pred cEEEEEeCCCCCC----HHHHHHHHHHHHh-cCCCcEEEEEeCCCC--CCChhhhccc-eeeeecCCCHHHHHHHhh
Q psy4285 372 YKLIILDEADAMT----NDAQNALRRIIEK-FTTNVRFCIICNYLS--KIPPAIQSRC-TRFRFGPLDSSLIMSRLD 440 (533)
Q Consensus 372 ~~vliiDE~d~l~----~~~~~~Ll~~le~-~~~~~~~I~~~n~~~--~l~~~l~sR~-~~i~~~~~~~~~~~~~l~ 440 (533)
+-+|||||++.+. .+....|.++..+ +..++.+|++|.++. .++..+++-| ..+.|...+..+...++.
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 5699999998773 3445556666654 356788999999887 7888888888 577888888888877764
No 149
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.32 E-value=0.00076 Score=66.48 Aligned_cols=94 Identities=14% Similarity=0.075 Sum_probs=69.1
Q ss_pred CCceEEEEEcCCCC-cCchhhhcccee-EEeCCCCHH-HHHHHHHHH-----------------------------Hhhc
Q psy4285 5 TTNVRFCIICNYLS-KITPAIQSRCTR-FRFGPLDSS-LIMSRLDYV-----------------------------IEQE 52 (533)
Q Consensus 5 ~~~~~~il~~~~~~-~i~~~i~SRc~~-~~~~~~~~~-~~~~~l~~~-----------------------------~~~~ 52 (533)
+.++++|.++|+.. .+.|+|+|||.+ +.|++|++. +-.+++++. ....
T Consensus 185 ~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 264 (350)
T 1g8p_A 185 PARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLP 264 (350)
T ss_dssp ECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCC
Confidence 34788888899854 899999999976 999999543 333444331 2234
Q ss_pred CCCCCHHHHHHHHHhcCC----CHHHHHHHHHHHHHh---CC-CCcchhhHHhh
Q psy4285 53 KVNVTPDGKKAIIDLSDG----DMRKVLNILQSAATA---HA-DEVNEDTIFTL 98 (533)
Q Consensus 53 ~~~~~~~~~~~~~~~~~g----~~r~a~~~l~~~~~~---~~-~~i~~~~i~~~ 98 (533)
++.+++++++.|+.++.| ++|.++++++.+... .+ ..|+.+.+.+.
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a 318 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRV 318 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 568999999999999887 999999999877543 22 34888776543
No 150
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.30 E-value=0.00051 Score=75.73 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+.++|++|+||||+|+.+++.
T Consensus 152 VV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 152 NVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp EEEECCSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCccHHHHHHHHHHh
Confidence 4889999999999999999853
No 151
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.29 E-value=0.00057 Score=61.64 Aligned_cols=95 Identities=12% Similarity=0.089 Sum_probs=52.3
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCC-CC-chhHHHHHHHHHH---------hcccCCCCCcEEEEE
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD-DR-GIGIVRDQIFQFA---------STKTMHKSSYKLIIL 377 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~---------~~~~~~~~~~~vlii 377 (533)
.+++||.|+||||.+...+...... +..++.+.+.. .+ +...+...++.-. ..........++|+|
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~---g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvViI 107 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFA---KQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIAI 107 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEEE
Confidence 5789999999999999998887544 23333333221 11 1111111111000 000000124789999
Q ss_pred eCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeC
Q psy4285 378 DEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409 (533)
Q Consensus 378 DE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n 409 (533)
||+..++.+....+..+.+ .+..+|+++-
T Consensus 108 DEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl 136 (214)
T 2j9r_A 108 DEVQFFDGDIVEVVQVLAN---RGYRVIVAGL 136 (214)
T ss_dssp CCGGGSCTTHHHHHHHHHH---TTCEEEEEEC
T ss_pred ECcccCCHHHHHHHHHHhh---CCCEEEEEec
Confidence 9999998776644444333 3678999885
No 152
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.28 E-value=0.0015 Score=59.59 Aligned_cols=20 Identities=40% Similarity=0.541 Sum_probs=19.2
Q ss_pred eeEeCCCCCChHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACAR 328 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~ 328 (533)
++++||||+||||+++.++.
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999998
No 153
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.25 E-value=0.0002 Score=71.07 Aligned_cols=91 Identities=22% Similarity=0.250 Sum_probs=54.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCH--
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTN-- 385 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~-- 385 (533)
.++++||||+||||+++.++... +..++.++.+... .+-.++.. ....++++||++....
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~~~~~~~~----~~~~lg~~--------~q~~~~l~dd~~~~~~~~ 232 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC------GGKALNVNLPLDR----LNFELGVA--------IDQFLVVFEDVKGTGGES 232 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH------CCEEECCSSCTTT----HHHHHGGG--------TTCSCEEETTCCCSTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHhhc------CCcEEEEeccchh----HHHHHHHh--------cchhHHHHHHHHHHHHHH
Confidence 48999999999999999999876 2223333333211 11111111 1224679999987753
Q ss_pred ------H---HHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhc
Q psy4285 386 ------D---AQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQS 420 (533)
Q Consensus 386 ------~---~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~s 420 (533)
. ....+...++ ..+.+++++|+++.+ +++.+
T Consensus 233 r~l~~~~~~~~~~~l~~~ld---G~v~v~~~tn~~~~l-~alf~ 272 (377)
T 1svm_A 233 RDLPSGQGINNLDNLRDYLD---GSVKVNLEKKHLNKR-TQIFP 272 (377)
T ss_dssp TTCCCCSHHHHHHTTHHHHH---CSSCEEECCSSSCCE-EECCC
T ss_pred hhccccCcchHHHHHHHHhc---CCCeEeeccCchhhH-HHhhc
Confidence 1 1133444453 345678888888877 55555
No 154
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.23 E-value=0.00042 Score=71.33 Aligned_cols=80 Identities=15% Similarity=0.198 Sum_probs=69.1
Q ss_pred CCceEEEEEcCCCC-----cCchhhhccceeEEeCCCCHHHHHHHHHHHHhh----cCCCCCHHHHHHHHHhcCCC----
Q psy4285 5 TTNVRFCIICNYLS-----KITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQ----EKVNVTPDGKKAIIDLSDGD---- 71 (533)
Q Consensus 5 ~~~~~~il~~~~~~-----~i~~~i~SRc~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~g~---- 71 (533)
.+.+++|.+||+.. .+.|+++|||+++.|.+|+.+++..+|+.++.+ .++.++++++..++.++.+.
T Consensus 289 ~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~ 368 (468)
T 3pxg_A 289 RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDR 368 (468)
T ss_dssp SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCS
T ss_pred CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Confidence 35788999999886 689999999999999999999999999988765 67889999999999887754
Q ss_pred --HHHHHHHHHHHHH
Q psy4285 72 --MRKVLNILQSAAT 84 (533)
Q Consensus 72 --~r~a~~~l~~~~~ 84 (533)
+++|+.+++.+..
T Consensus 369 ~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 369 FLPDKAIDLIDEAGS 383 (468)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHH
Confidence 4689999988765
No 155
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.20 E-value=0.0019 Score=58.79 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.8
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
++|+||||+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999887
No 156
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.18 E-value=0.00066 Score=79.04 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.1
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTK 333 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~ 333 (533)
+++|||||||||++|++++.+....
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~~~~ 1109 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAAQRE 1109 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCChHHHHHHHHHHhhhc
Confidence 8999999999999999999876443
No 157
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.18 E-value=0.0012 Score=67.45 Aligned_cols=81 Identities=12% Similarity=0.061 Sum_probs=68.6
Q ss_pred CCCceEEEEEcCCCCcCchhhhccc-eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Q psy4285 4 FTTNVRFCIICNYLSKITPAIQSRC-TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDG-DMRKVLNILQS 81 (533)
Q Consensus 4 ~~~~~~~il~~~~~~~i~~~i~SRc-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~~r~a~~~l~~ 81 (533)
++.+++||.+||.+..+.|+++||| .++.|+.|+.++...+++..+...+..+++..+..|+..+.| +.+...+++..
T Consensus 268 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~ 347 (444)
T 2zan_A 268 DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRD 347 (444)
T ss_dssp CCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5678999999999999999999999 589999999999999999888776666788899999999999 56666666655
Q ss_pred HHH
Q psy4285 82 AAT 84 (533)
Q Consensus 82 ~~~ 84 (533)
+..
T Consensus 348 a~~ 350 (444)
T 2zan_A 348 ALM 350 (444)
T ss_dssp HHT
T ss_pred HHH
Confidence 543
No 158
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.18 E-value=0.00092 Score=64.28 Aligned_cols=74 Identities=14% Similarity=0.150 Sum_probs=65.4
Q ss_pred CceEEEEEcCCCCcCchhhhccc-eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q psy4285 6 TNVRFCIICNYLSKITPAIQSRC-TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGDMRKVLNIL 79 (533)
Q Consensus 6 ~~~~~il~~~~~~~i~~~i~SRc-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~r~a~~~l 79 (533)
.++++|.+||.+..+.|+++||| ..+.|+.|+.++...+++..+.+.+..++++.+..+++.+.|..+..+..|
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 46889999999999999999999 788999999999999999888888888889999999999999988777444
No 159
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.16 E-value=0.0016 Score=64.41 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=67.4
Q ss_pred CCCceEEEEEcCCCCcCchhhhccce-eEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Q psy4285 4 FTTNVRFCIICNYLSKITPAIQSRCT-RFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDG-DMRKVLNILQS 81 (533)
Q Consensus 4 ~~~~~~~il~~~~~~~i~~~i~SRc~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~~r~a~~~l~~ 81 (533)
++.++++|.+||.+..+.++++|||. .+.|+.|+.++..+++...+...+..++++.++.++..+.| +.+...++.+.
T Consensus 218 ~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 218 SEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45788999999999999999999995 78999999999999999988888888899999999999999 44444444444
Q ss_pred HH
Q psy4285 82 AA 83 (533)
Q Consensus 82 ~~ 83 (533)
+.
T Consensus 298 a~ 299 (357)
T 3d8b_A 298 AS 299 (357)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 160
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.16 E-value=0.0015 Score=63.62 Aligned_cols=81 Identities=12% Similarity=0.127 Sum_probs=69.0
Q ss_pred CCCCceEEEEEcCCCCcCchhhhccc-eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Q psy4285 3 KFTTNVRFCIICNYLSKITPAIQSRC-TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDG-DMRKVLNILQ 80 (533)
Q Consensus 3 ~~~~~~~~il~~~~~~~i~~~i~SRc-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~~r~a~~~l~ 80 (533)
.+..++++|.+||.+..+.|+++||| ..+.|+.|+.++..++++..+.+.+..+++..+..++..+.| +.+..-++++
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 150 NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp TSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred ccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45678999999999999999999999 678999999999999999988877777889999999999988 5666555555
Q ss_pred HHH
Q psy4285 81 SAA 83 (533)
Q Consensus 81 ~~~ 83 (533)
.+.
T Consensus 230 ~a~ 232 (322)
T 3eie_A 230 DAL 232 (322)
T ss_dssp HHT
T ss_pred HHH
Confidence 543
No 161
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.16 E-value=0.00089 Score=78.92 Aligned_cols=96 Identities=20% Similarity=0.275 Sum_probs=56.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCch---------------------hHHHHHHHHHHhccc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI---------------------GIVRDQIFQFASTKT 366 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~ 366 (533)
+++++||||||||++|.+++.+.... +.....++..+.... .............
T Consensus 1083 ~vll~G~~GtGKT~la~~~~~ea~k~---Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~-- 1157 (2050)
T 3cmu_A 1083 IVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS-- 1157 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHh--
Confidence 49999999999999999999887544 333444443332111 1111222222211
Q ss_pred CCCCCcEEEEEeCCCCCCHHH------------------HHHHHHHHHhcCCCcEEEEEeCCC
Q psy4285 367 MHKSSYKLIILDEADAMTNDA------------------QNALRRIIEKFTTNVRFCIICNYL 411 (533)
Q Consensus 367 ~~~~~~~vliiDE~d~l~~~~------------------~~~Ll~~le~~~~~~~~I~~~n~~ 411 (533)
..++++|||++..+.+.. .+.|++++........+++++|..
T Consensus 1158 ---~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~stiI~tN~~ 1217 (2050)
T 3cmu_A 1158 ---GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1217 (2050)
T ss_dssp ---TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred ---CCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 357899999999984321 234666665444444555566654
No 162
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.13 E-value=0.0046 Score=71.67 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=36.9
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhccceeeeecC-CCHHHHHHHhhc
Q psy4285 372 YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGP-LDSSLIMSRLDY 441 (533)
Q Consensus 372 ~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR~~~i~~~~-~~~~~~~~~l~~ 441 (533)
.-+||+|+++.. ..++....+.++|+||....-. .........+...+ ++.++..+.+..
T Consensus 237 ~~LlvlDd~~~~---------~~~~~~~~~~~ilvTtR~~~~~-~~~~~~~~~~~~~~~l~~~~a~~l~~~ 297 (1249)
T 3sfz_A 237 RSLLILDDVWDP---------WVLKAFDNQCQILLTTRDKSVT-DSVMGPKHVVPVESGLGREKGLEILSL 297 (1249)
T ss_dssp SCEEEEESCCCH---------HHHTTTCSSCEEEEEESSTTTT-TTCCSCBCCEECCSSCCHHHHHHHHHH
T ss_pred CEEEEEecCCCH---------HHHHhhcCCCEEEEEcCCHHHH-HhhcCCceEEEecCCCCHHHHHHHHHH
Confidence 679999999863 1233346778999999765421 11112224556664 777777776664
No 163
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.12 E-value=0.0023 Score=62.79 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.6
Q ss_pred eeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~ 332 (533)
++++||||+||||++..++..+..
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 799999999999999999987643
No 164
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.12 E-value=0.0022 Score=59.70 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=21.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|+||||+||||+++.+++.+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999887
No 165
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.12 E-value=0.0025 Score=62.68 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=21.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
.++++||||+||||++..++..+..
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~ 87 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQA 87 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3799999999999999999977643
No 166
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.11 E-value=0.002 Score=57.35 Aligned_cols=24 Identities=46% Similarity=0.773 Sum_probs=21.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.+.|.||+|+||||+++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 478999999999999999998773
No 167
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.08 E-value=0.0018 Score=57.44 Aligned_cols=92 Identities=13% Similarity=0.094 Sum_probs=50.5
Q ss_pred eeEeCCCCCChH-HHHHHHHHHHccccccCcceEEecCC-CCCchhHHHHHHHHHHhcc------cC--CCCCcEEEEEe
Q psy4285 309 LLFYGPPGTGKT-TTILACARKLYTKAQFNAMVLELNAS-DDRGIGIVRDQIFQFASTK------TM--HKSSYKLIILD 378 (533)
Q Consensus 309 ~ll~GppGtGKT-~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~--~~~~~~vliiD 378 (533)
.++|||.|+||| ++.+++.+.... +..++.+.+. +.+....+...++...... .. .....++|+||
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~----~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlID 98 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA----QYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGID 98 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT----TCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEES
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEE
Confidence 689999999999 888888876533 2334444332 1111010111111000000 00 00235799999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCcEEEEEe
Q psy4285 379 EADAMTNDAQNALRRIIEKFTTNVRFCIIC 408 (533)
Q Consensus 379 E~d~l~~~~~~~Ll~~le~~~~~~~~I~~~ 408 (533)
|++.+ ++ +..+++.+.+ .+..||+++
T Consensus 99 EaQFf-k~-~ve~~~~L~~--~gk~VI~~G 124 (195)
T 1w4r_A 99 EGQFF-PD-IVEFCEAMAN--AGKTVIVAA 124 (195)
T ss_dssp SGGGC-TT-HHHHHHHHHH--TTCEEEEEE
T ss_pred chhhh-HH-HHHHHHHHHH--CCCeEEEEe
Confidence 99999 55 5555565543 456788887
No 168
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.08 E-value=0.00071 Score=60.36 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=51.3
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCC-C------------CCc-----hhHHHHHHHHHHhcccCCCC
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNAS-D------------DRG-----IGIVRDQIFQFASTKTMHKS 370 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~-~------------~~~-----~~~~~~~~~~~~~~~~~~~~ 370 (533)
.+++||+|+||||.+..+++.+...+ ..+..+.+. + +.. .....+..... ..
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g---~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~-------~~ 80 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAK---QKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYF-------EE 80 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHC-------CT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHH-------hc
Confidence 68999999999999999998874332 122211110 0 000 00001111111 12
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeC
Q psy4285 371 SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409 (533)
Q Consensus 371 ~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n 409 (533)
..++|+|||++.++++....+..+.+ .+..+|+++-
T Consensus 81 ~~dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl 116 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGL 116 (191)
T ss_dssp TCSEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEEC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEec
Confidence 46899999999998776555444443 3678888874
No 169
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.08 E-value=0.0011 Score=66.62 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=52.8
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHH----------------HHHhccc-CCCCC
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF----------------QFASTKT-MHKSS 371 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~-~~~~~ 371 (533)
.++.|+||||||+++..++.. .....+.+.. .....+++.+. .+..... .....
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~~--------~~~lVlTpT~-~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~ 234 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVNF--------EEDLILVPGR-QAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQ 234 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCCT--------TTCEEEESCH-HHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCC
T ss_pred EEEEcCCCCCHHHHHHHHhcc--------CCeEEEeCCH-HHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCc
Confidence 689999999999999877531 1112222221 12222222221 1111110 00113
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCC
Q psy4285 372 YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411 (533)
Q Consensus 372 ~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~ 411 (533)
.+++||||+.+++......++..+ ...++|++++..
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~----~~~~vilvGD~~ 270 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMS----LCDIAYVYGDTQ 270 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHT----TCSEEEEEECTT
T ss_pred CCEEEEeCcccCCHHHHHHHHHhC----CCCEEEEecCcc
Confidence 689999999999988887777665 227899998644
No 170
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.08 E-value=0.002 Score=62.80 Aligned_cols=80 Identities=13% Similarity=0.055 Sum_probs=67.1
Q ss_pred CCCceEEEEEcCCCCcCchhhhccc-eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCCC-HHHHHHHHHH
Q psy4285 4 FTTNVRFCIICNYLSKITPAIQSRC-TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDGD-MRKVLNILQS 81 (533)
Q Consensus 4 ~~~~~~~il~~~~~~~i~~~i~SRc-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~-~r~a~~~l~~ 81 (533)
++.++++|.+||.+..+.|++++|| ..+.|+.|+.++..++|+..+.+.+..+++..+..+++.+.|- .+..-++...
T Consensus 146 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 146 DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp CCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred cCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5678999999999999999999999 7899999999999999998887777777889999999999985 4444444444
Q ss_pred HH
Q psy4285 82 AA 83 (533)
Q Consensus 82 ~~ 83 (533)
+.
T Consensus 226 A~ 227 (322)
T 1xwi_A 226 AL 227 (322)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 171
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.08 E-value=0.00034 Score=62.10 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=22.3
Q ss_pred CceeEeCCCCCChHHHHHHHHHHH
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l 330 (533)
++++|+||||+||||+++.+++.+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999988
No 172
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.04 E-value=0.0036 Score=61.62 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
.++++||||+|||++|..++..+..
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~ 89 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQR 89 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3799999999999999999987643
No 173
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.04 E-value=0.0029 Score=58.02 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=21.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.++++||||+||||+++.++..+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999997653
No 174
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.03 E-value=0.00042 Score=61.03 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=21.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++++|+||+||||+++.+++.+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999987
No 175
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.02 E-value=0.0013 Score=59.86 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=21.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.||||+||+|.|+.+++.+
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37889999999999999999987
No 176
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.02 E-value=0.0036 Score=56.91 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=52.1
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCC-CCCchhHHHHHHHHHHhc------ccCC--CCCcEEEEEeC
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNAS-DDRGIGIVRDQIFQFAST------KTMH--KSSYKLIILDE 379 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~--~~~~~vliiDE 379 (533)
.+++|+.|+||||.+...+......+ ..++.+... +.+....+....+.-... .... ....++|+|||
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g---~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~~~~dvViIDE 98 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDE 98 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTT---CCEEEEEETTCCCC-----------CEEEEESSGGGGHHHHTTCSEEEESS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEEeecCCccchHHHHhhcCCeeEEEecCCHHHHHHHhccCCEEEEEc
Confidence 58899999999988888777664442 222222211 111001111111100000 0000 03468999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 380 ADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 380 ~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
+..+.. ...+.+.++. .+..+|+++-.
T Consensus 99 aQF~~~--v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 99 GQFFPD--IVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp GGGCTT--HHHHHHHHHH--TTCEEEEECCS
T ss_pred hhhhhh--HHHHHHHHHh--CCCEEEEEecc
Confidence 999974 6667777776 56789998844
No 177
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.99 E-value=0.0051 Score=60.01 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=71.8
Q ss_pred CCceEEEEEcCCCC-----cCchhhhcccee-EEeCCCCHHHHHHHHHHHHhhc----------------------CCCC
Q psy4285 5 TTNVRFCIICNYLS-----KITPAIQSRCTR-FRFGPLDSSLIMSRLDYVIEQE----------------------KVNV 56 (533)
Q Consensus 5 ~~~~~~il~~~~~~-----~i~~~i~SRc~~-~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~ 56 (533)
+.++.+|.++|+.. .+.++++|||.+ +.|.+|+.++..++|++.+..+ ++.+
T Consensus 148 ~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 227 (331)
T 2r44_A 148 DNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTI 227 (331)
T ss_dssp CSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBC
T ss_pred CCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCC
Confidence 55677777777654 489999999974 9999999999999998876542 6778
Q ss_pred CHHHHHHHHHhc-----CC---------------CHHHHHHHHHHHHHh----CCCCcchhhHHhhh
Q psy4285 57 TPDGKKAIIDLS-----DG---------------DMRKVLNILQSAATA----HADEVNEDTIFTLL 99 (533)
Q Consensus 57 ~~~~~~~~~~~~-----~g---------------~~r~a~~~l~~~~~~----~~~~i~~~~i~~~~ 99 (533)
+++.++.++..+ .| ++|.+++++..+... ....++.+.+.+++
T Consensus 228 ~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~ 294 (331)
T 2r44_A 228 SESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVA 294 (331)
T ss_dssp CHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 999898887765 23 799999999876432 23347888776544
No 178
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.98 E-value=0.0087 Score=61.54 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=47.3
Q ss_pred EEEEEeCCCCCCHH----HHHHHHHHHHhc-CCCcEEEEEeCCCC--CCChhhhccc-eeeeecCCCHHHHHHHhhc
Q psy4285 373 KLIILDEADAMTND----AQNALRRIIEKF-TTNVRFCIICNYLS--KIPPAIQSRC-TRFRFGPLDSSLIMSRLDY 441 (533)
Q Consensus 373 ~vliiDE~d~l~~~----~~~~Ll~~le~~-~~~~~~I~~~n~~~--~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~ 441 (533)
-+++|||+..+... ....+.++.... ..++.+|++|.++. .+...+++.| ..+.|.-.+..+.+.++..
T Consensus 299 ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 299 IVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHSS
T ss_pred EEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcCC
Confidence 48999999665432 223333443433 34788999998887 5777788877 5778888888888877654
No 179
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.96 E-value=0.0019 Score=59.75 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=17.4
Q ss_pred ceeEeCCCCCChHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACAR 328 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~ 328 (533)
.+++.||+|+|||++...+.-
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHHh
Confidence 589999999999987766543
No 180
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.95 E-value=0.0045 Score=60.92 Aligned_cols=92 Identities=17% Similarity=0.174 Sum_probs=53.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCC-C---------------CCchhHHHHHHHHHHhcccCCCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNAS-D---------------DRGIGIVRDQIFQFASTKTMHKSS 371 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~ 371 (533)
.+++.||+|+||||+.++++..+.... +..++.+..+ + ......+.+.+.... ...
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~--~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL------~~~ 196 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTK--YHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSAL------RED 196 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHC--CCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHT------TSC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCC--CcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHh------hhC
Confidence 589999999999999999998774321 1111111100 0 000112233333222 246
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q psy4285 372 YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412 (533)
Q Consensus 372 ~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~ 412 (533)
++++++||+- +.+....+++..+. +..+++|+...+
T Consensus 197 PdvillDEp~--d~e~~~~~~~~~~~---G~~vl~t~H~~~ 232 (356)
T 3jvv_A 197 PDIILVGEMR--DLETIRLALTAAET---GHLVFGTLHTTS 232 (356)
T ss_dssp CSEEEESCCC--SHHHHHHHHHHHHT---TCEEEEEESCSS
T ss_pred cCEEecCCCC--CHHHHHHHHHHHhc---CCEEEEEEccCh
Confidence 7899999996 46666666666543 345666765544
No 181
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.95 E-value=0.00057 Score=66.16 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=66.8
Q ss_pred CceEEEEEcCC--------------------------CCcCchhhhccc-eeEEeCCCCHHHHHHHHHHHHhhc------
Q psy4285 6 TNVRFCIICNY--------------------------LSKITPAIQSRC-TRFRFGPLDSSLIMSRLDYVIEQE------ 52 (533)
Q Consensus 6 ~~~~~il~~~~--------------------------~~~i~~~i~SRc-~~~~~~~~~~~~~~~~l~~~~~~~------ 52 (533)
.+++||++||. ...+.|++.||| .++.|.||+.+++..++++.+.+.
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~ 238 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAE 238 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHT
T ss_pred CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 36779999998 557899999999 899999999999999998876531
Q ss_pred ---CCCCCHHHHHHHHHhcC---CCHHHHHHHHHHHHH
Q psy4285 53 ---KVNVTPDGKKAIIDLSD---GDMRKVLNILQSAAT 84 (533)
Q Consensus 53 ---~~~~~~~~~~~~~~~~~---g~~r~a~~~l~~~~~ 84 (533)
.+.+++++++.++..+- ||+|...+.++.+..
T Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 239 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp TTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred CCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 34688999999998764 999999999998755
No 182
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.95 E-value=0.00051 Score=59.94 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=22.4
Q ss_pred CceeEeCCCCCChHHHHHHHHHHH
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++|+|+||+||||+++.+++.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999988
No 183
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.95 E-value=0.0042 Score=56.64 Aligned_cols=52 Identities=23% Similarity=0.267 Sum_probs=31.7
Q ss_pred CCcEEEEEeCCCCCC--HHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhhhcc
Q psy4285 370 SSYKLIILDEADAMT--NDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSR 421 (533)
Q Consensus 370 ~~~~vliiDE~d~l~--~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l~sR 421 (533)
...+++|+||+|.+. ......+..++...+.+..+++.|..+..-...+.++
T Consensus 157 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 210 (220)
T 1t6n_A 157 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK 210 (220)
T ss_dssp TTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHT
T ss_pred ccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHH
Confidence 457899999999874 3444555566665555677776665444323334333
No 184
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.95 E-value=0.0046 Score=61.09 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=21.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
.++++||||+|||++|..++..+..
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~ 100 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQK 100 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHH
Confidence 3789999999999999999987643
No 185
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.93 E-value=0.00063 Score=59.40 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=21.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.||||+||||+++.+++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 186
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.92 E-value=0.0029 Score=58.61 Aligned_cols=23 Identities=26% Similarity=0.161 Sum_probs=20.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.|+||||+||||+++.++...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 37999999999999999999864
No 187
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.91 E-value=0.0019 Score=69.02 Aligned_cols=25 Identities=44% Similarity=0.561 Sum_probs=21.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
..++.||||||||+++..++..+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~ 221 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLAR 221 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHH
Confidence 5799999999999999988877653
No 188
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.90 E-value=0.00065 Score=64.49 Aligned_cols=76 Identities=9% Similarity=0.147 Sum_probs=61.7
Q ss_pred CCCceEEEEEcCCCCcCch-hhhcc-ceeEEeCCCCH-HHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCC-----CHHHH
Q psy4285 4 FTTNVRFCIICNYLSKITP-AIQSR-CTRFRFGPLDS-SLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDG-----DMRKV 75 (533)
Q Consensus 4 ~~~~~~~il~~~~~~~i~~-~i~SR-c~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g-----~~r~a 75 (533)
++.++++|.+||.+..+-+ .++|| |..+.|++++. +++..++.+ . ..++++.+..++..+.| |+|++
T Consensus 164 ~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~----~-~~~~~~~~~~l~~~~~g~~~~g~ir~l 238 (272)
T 1d2n_A 164 QGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL----L-GNFKDKERTTIAQQVKGKKVWIGIKKL 238 (272)
T ss_dssp TTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH----H-TCSCHHHHHHHHHHHTTSEEEECHHHH
T ss_pred CCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh----c-CCCCHHHHHHHHHHhcCCCccccHHHH
Confidence 4566778888888876666 68999 79999999988 777777653 2 24678899999999988 99999
Q ss_pred HHHHHHHHH
Q psy4285 76 LNILQSAAT 84 (533)
Q Consensus 76 ~~~l~~~~~ 84 (533)
+|+++.+..
T Consensus 239 ~~~l~~a~~ 247 (272)
T 1d2n_A 239 LMLIEMSLQ 247 (272)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 999999865
No 189
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.89 E-value=0.00068 Score=59.87 Aligned_cols=24 Identities=46% Similarity=0.630 Sum_probs=22.3
Q ss_pred CceeEeCCCCCChHHHHHHHHHHH
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l 330 (533)
+.++|+|+||+||||+++.+++.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999987
No 190
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.86 E-value=0.0081 Score=55.62 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=20.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.++++||||+|||+++..++....
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 379999999999999998887654
No 191
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.84 E-value=0.00075 Score=59.78 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=21.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|+|+||+||||+++.+++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999987
No 192
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.84 E-value=0.00076 Score=60.71 Aligned_cols=23 Identities=48% Similarity=0.531 Sum_probs=21.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.||||+||||+++.+++.+
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999988
No 193
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.82 E-value=0.00092 Score=58.72 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=21.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.|+||+||||+++.+++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999987
No 194
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.81 E-value=0.0015 Score=61.44 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=21.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.|+||+||||+++.+++.+
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999985
No 195
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.81 E-value=0.00076 Score=59.86 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=21.4
Q ss_pred CceeEeCCCCCChHHHHHHHHHH
Q psy4285 307 PHLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~ 329 (533)
..++|+|+||+||||+++.+++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999998
No 196
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.81 E-value=0.0046 Score=60.70 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=20.5
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
++++||||+|||+++..++...
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999874
No 197
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.80 E-value=0.0026 Score=69.57 Aligned_cols=26 Identities=46% Similarity=0.636 Sum_probs=22.2
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
+..++.||||||||+++..++..+..
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35799999999999999988887654
No 198
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.72 E-value=0.0011 Score=58.04 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=21.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.|+||||+||||+++.++..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 199
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.72 E-value=0.01 Score=55.71 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=21.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.+.+.||+|+||||+.+.++..+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhCC
Confidence 489999999999999999998763
No 200
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.71 E-value=0.0053 Score=56.25 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.+.|.||+|+||||+++.++..+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 379999999999999999998653
No 201
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.69 E-value=0.00096 Score=65.01 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=29.9
Q ss_pred hhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 294 CYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 294 ~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~ 331 (533)
...+...+..+..++++|.|+||+||||+++.+++.+.
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 33444455666666799999999999999999999874
No 202
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0037 Score=68.44 Aligned_cols=42 Identities=14% Similarity=0.379 Sum_probs=28.6
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCChhh
Q psy4285 371 SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418 (533)
Q Consensus 371 ~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l~~~l 418 (533)
..+++||||+..++.. +.+..++ ....++|++++... +.|.+
T Consensus 517 ~fd~viIDEA~q~~e~--~~li~l~---~~~~~lilvGD~~Q-L~pvv 558 (802)
T 2xzl_A 517 KFRTVLIDESTQASEP--ECLIPIV---KGAKQVILVGDHQQ-LGPVI 558 (802)
T ss_dssp CCSEEEETTGGGSCHH--HHHHHHT---TTBSEEEEEECTTS-CCCCC
T ss_pred cCCEEEEECccccchH--HHHHHHH---hCCCEEEEEeCccc-cCCee
Confidence 6889999999888754 2455555 23468999998544 44433
No 203
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.67 E-value=0.0057 Score=55.49 Aligned_cols=105 Identities=16% Similarity=0.217 Sum_probs=56.2
Q ss_pred CCCceeEeCCCCCChHHHHHHHHHHHccccc--cCc---------ceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcE
Q psy4285 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQ--FNA---------MVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYK 373 (533)
Q Consensus 305 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~--~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (533)
..+++++.|++|+|||+++..+....+.... ... .+..++. .+....+.....+..... .....-
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt---~G~~~~~~~~~~~~~~~~-~~~~~~ 86 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDF---PGHVKLRYKLSDYLKTRA-KFVKGL 86 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTGGGSSCEEEEC---CCCGGGTHHHHHHHHHHG-GGEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEeeCceEEEEEC---CCcHHHHHHHHHHHHhcc-ccCCEE
Confidence 3456999999999999999999876532210 000 0111111 122222233333332210 001345
Q ss_pred EEEEeCC-CCC-CHHHHHHHHHHHHh----cCCCcEEEEEeCCCCC
Q psy4285 374 LIILDEA-DAM-TNDAQNALRRIIEK----FTTNVRFCIICNYLSK 413 (533)
Q Consensus 374 vliiDE~-d~l-~~~~~~~Ll~~le~----~~~~~~~I~~~n~~~~ 413 (533)
++++|-. +.- .......+..++.. .+.+..+++++|..+.
T Consensus 87 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 87 IFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp EEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred EEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 7888876 222 23444556566543 3456788999998774
No 204
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.65 E-value=0.01 Score=56.46 Aligned_cols=95 Identities=16% Similarity=0.112 Sum_probs=69.9
Q ss_pred CCCceEEEEEcCCCCcCchhhhc--cc-eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCC-CHHHHHHHH
Q psy4285 4 FTTNVRFCIICNYLSKITPAIQS--RC-TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDG-DMRKVLNIL 79 (533)
Q Consensus 4 ~~~~~~~il~~~~~~~i~~~i~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~~r~a~~~l 79 (533)
+..++++|.+||.+..+.|++++ |+ ..+.|++|+.++..++++..+...+.. ++..+..++..+.| +.|...+++
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~ 231 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAIC 231 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHH
Confidence 45688999999999999999999 88 589999999999999999887655443 22346788888877 555555555
Q ss_pred HHHHH---hC-CCCcchhhHHhhh
Q psy4285 80 QSAAT---AH-ADEVNEDTIFTLL 99 (533)
Q Consensus 80 ~~~~~---~~-~~~i~~~~i~~~~ 99 (533)
+.+.. .. ...|+.+.+.+.+
T Consensus 232 ~~a~~~a~~~~~~~I~~~d~~~al 255 (285)
T 3h4m_A 232 TEAGMNAIRELRDYVTMDDFRKAV 255 (285)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHhccCcCCHHHHHHHH
Confidence 55433 22 3458888765543
No 205
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.64 E-value=0.0012 Score=57.73 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=21.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|+|+||+||||+++.+++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 206
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.63 E-value=0.0014 Score=62.60 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=21.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.||||+||||+++.+++.+
T Consensus 35 livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999876
No 207
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.62 E-value=0.0076 Score=60.24 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=19.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.|+||||+||||+++.++...
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEEcCCCCChHHHHHHHHHHh
Confidence 37999999999999999887554
No 208
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.62 E-value=0.0084 Score=60.37 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=21.8
Q ss_pred eeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~ 332 (533)
+++.||+|+||||++..+|..+..
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999988744
No 209
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.61 E-value=0.0015 Score=59.19 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
++++.+|+|+|||.++...+...
T Consensus 50 ~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 69999999999999998887654
No 210
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.61 E-value=0.0015 Score=61.19 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.||||+||||+|+.+|+.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 37899999999999999999987
No 211
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.61 E-value=0.0023 Score=67.94 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=22.0
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
.++++.+|+|+|||.++-.++..+..
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHHHHh
Confidence 35899999999999999888877754
No 212
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.59 E-value=0.0017 Score=59.42 Aligned_cols=23 Identities=30% Similarity=0.677 Sum_probs=21.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.|+||+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999987
No 213
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0025 Score=63.26 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=52.3
Q ss_pred cCccccccCCCChhhHHHHHHHHHhcccccceeeeecCCcccchhhhH--H---HHhhhhhcccccCCCceEEEEcCccc
Q psy4285 139 SDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVR--D---QIFQFASTKTMHKSSYKLIILDEADA 213 (533)
Q Consensus 139 ~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~~~~e~nasd~~g~~~~~--d---~i~~~a~~~~l~~~~~~~iilDE~d~ 213 (533)
..+..+||||||||..+.|++..+. ..++.++++++.+...+. . .+...|.. .+|.++++||+|.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~~-----~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~-----~aP~IIFiDEiDa 252 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHTD-----CKFIRVSGAELVQKYIGEGSRMVRELFVMARE-----HAPSIIFMDEIDS 252 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHHT-----CEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHH-----TCSEEEEEESSSC
T ss_pred CceEEeCCCCCCHHHHHHHHHHhhC-----CCceEEEhHHhhccccchHHHHHHHHHHHHHH-----hCCceEeeecchh
Confidence 4577899999999999999999988 688999999887776655 2 23222322 3577999999999
Q ss_pred cCH
Q psy4285 214 MTN 216 (533)
Q Consensus 214 l~~ 216 (533)
+..
T Consensus 253 i~~ 255 (405)
T 4b4t_J 253 IGS 255 (405)
T ss_dssp CTT
T ss_pred hcc
Confidence 873
No 214
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.59 E-value=0.0012 Score=57.71 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.||||+||||+++.+ +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 4789999999999999999 655
No 215
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.58 E-value=0.0031 Score=63.75 Aligned_cols=82 Identities=13% Similarity=0.091 Sum_probs=44.5
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeCCCCCCHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 388 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~d~l~~~~~ 388 (533)
++++|+||+||||+++.+++.+ +.. .++................... ....+|+|-... .....
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~------~~~--~i~~D~~~~~~~~~~~~~~~l~-------~g~~vIiD~~~~-~~~~r 324 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSA------GYV--HVNRDTLGSWQRCVSSCQAALR-------QGKRVVIDNTNP-DVPSR 324 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGG------TCE--ECCGGGSCSHHHHHHHHHHHHH-------TTCCEEEESCCC-SHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc------CcE--EEccchHHHHHHHHHHHHHHHh-------cCCcEEEeCCCC-CHHHH
Confidence 7899999999999999998765 322 2333222222222222222221 123466776543 34445
Q ss_pred HHHHHHHHhcCCCcEEEE
Q psy4285 389 NALRRIIEKFTTNVRFCI 406 (533)
Q Consensus 389 ~~Ll~~le~~~~~~~~I~ 406 (533)
..+.+...+....+.+|.
T Consensus 325 ~~~~~~~~~~~~~~~~v~ 342 (416)
T 3zvl_A 325 ARYIQCAKDAGVPCRCFN 342 (416)
T ss_dssp HHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHcCCeEEEEE
Confidence 556666655443344433
No 216
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.58 E-value=0.016 Score=58.40 Aligned_cols=26 Identities=42% Similarity=0.560 Sum_probs=22.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTK 333 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~ 333 (533)
.+++.|++|+||||++..+|..+...
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 38999999999999999999887543
No 217
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.56 E-value=0.0014 Score=58.96 Aligned_cols=23 Identities=48% Similarity=0.836 Sum_probs=21.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|+|+||+||||+++.+++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 218
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.55 E-value=0.0014 Score=58.31 Aligned_cols=23 Identities=43% Similarity=0.495 Sum_probs=21.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.|+||+||||+++.+++.+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999987
No 219
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.55 E-value=0.0017 Score=58.51 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=21.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.|+||+||||+++.+++.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 220
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.54 E-value=0.0051 Score=59.82 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.4
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
++++||||+|||+++..++...
T Consensus 101 ~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 101 TEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999764
No 221
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.53 E-value=0.0013 Score=58.43 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=22.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.++|.|+||+||||+++.+++.+.
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999873
No 222
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.53 E-value=0.0016 Score=57.66 Aligned_cols=23 Identities=43% Similarity=0.798 Sum_probs=21.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|+|+||+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999887
No 223
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.53 E-value=0.0016 Score=56.67 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=21.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|+|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 224
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.53 E-value=0.0058 Score=60.08 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=20.6
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
+.++||||+||||+++.++...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999875
No 225
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.52 E-value=0.0015 Score=58.37 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.|+||+||||+++.+++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 226
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.51 E-value=0.0079 Score=57.18 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=20.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
+.++.+|+|+|||.++..++....
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~ 153 (282)
T 1rif_A 130 RRILNLPTSAGRSLIQALLARYYL 153 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEcCCCCCcHHHHHHHHHHHH
Confidence 468899999999999988777653
No 227
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.51 E-value=0.008 Score=53.99 Aligned_cols=42 Identities=24% Similarity=0.382 Sum_probs=26.3
Q ss_pred CCcEEEEEeCCCCCCH-HHHHHHHHHHHhcCCCcEEEEEeCCC
Q psy4285 370 SSYKLIILDEADAMTN-DAQNALRRIIEKFTTNVRFCIICNYL 411 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~-~~~~~Ll~~le~~~~~~~~I~~~n~~ 411 (533)
...+++|+||+|.+.. .....+..++...+.+..+++.|...
T Consensus 145 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 187 (206)
T 1vec_A 145 DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATF 187 (206)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred ccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeC
Confidence 4578999999997643 33344555555555566666665443
No 228
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.51 E-value=0.0075 Score=55.01 Aligned_cols=42 Identities=21% Similarity=0.402 Sum_probs=26.5
Q ss_pred CCcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCCcEEEEEeCCC
Q psy4285 370 SSYKLIILDEADAMTND-AQNALRRIIEKFTTNVRFCIICNYL 411 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~n~~ 411 (533)
...+++|+||+|.+... ....+..++...+.+..+++.|...
T Consensus 154 ~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~ 196 (224)
T 1qde_A 154 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM 196 (224)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSC
T ss_pred hhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeec
Confidence 45689999999987542 2334555555555566666665443
No 229
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.50 E-value=0.0017 Score=57.94 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.|+||+||||+++.+++.+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999999999987
No 230
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.48 E-value=0.0013 Score=57.73 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=19.6
Q ss_pred ceeEeCCCCCChHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACAR 328 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~ 328 (533)
.+++.|+||+||||+++.+++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 378999999999999999998
No 231
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.47 E-value=0.0013 Score=58.58 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=22.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.++|.|+||+||||+++.+++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999874
No 232
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.46 E-value=0.0023 Score=57.51 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.|.||+|+||||+++.++..+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 48999999999999999999887
No 233
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.46 E-value=0.006 Score=57.44 Aligned_cols=91 Identities=19% Similarity=0.282 Sum_probs=67.3
Q ss_pred CCceEEEEEcCCC-------CcCchhhhccce--eEEeCCCCH--HHHHHHH----HHHHhhcCC----CCCHHHHHHHH
Q psy4285 5 TTNVRFCIICNYL-------SKITPAIQSRCT--RFRFGPLDS--SLIMSRL----DYVIEQEKV----NVTPDGKKAII 65 (533)
Q Consensus 5 ~~~~~~il~~~~~-------~~i~~~i~SRc~--~~~~~~~~~--~~~~~~l----~~~~~~~~~----~~~~~~~~~~~ 65 (533)
+.++++|++||+. ..+.+.+.+|+. .+.++++++ +++...+ ++.+...+. .+++++++.+.
T Consensus 139 ~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~ 218 (265)
T 2bjv_A 139 QVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLL 218 (265)
T ss_dssp ECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHH
T ss_pred cCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHH
Confidence 4578999999985 346799999984 588888876 6666544 444444444 67899999998
Q ss_pred Hhc-CCCHHHHHHHHHHHHHhC-CCCcchhhH
Q psy4285 66 DLS-DGDMRKVLNILQSAATAH-ADEVNEDTI 95 (533)
Q Consensus 66 ~~~-~g~~r~a~~~l~~~~~~~-~~~i~~~~i 95 (533)
.++ .||+|...+.++.++... +..|+.+.+
T Consensus 219 ~~~~~gn~reL~~~l~~~~~~~~~~~i~~~~l 250 (265)
T 2bjv_A 219 NYRWPGNIRELKNVVERSVYRHGTSDYPLDDI 250 (265)
T ss_dssp HSCCTTHHHHHHHHHHHHHHHHCCSSSCBCCC
T ss_pred hCCCCCCHHHHHHHHHHHHHhCCCCcCcHHHc
Confidence 776 899999999999987543 334666554
No 234
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.45 E-value=0.0033 Score=62.63 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=54.9
Q ss_pred cCchhhhccc-eeEEeCCCCHHHHHHHHHH----HHh---------hcCCCCCHHHHHHHHHhcC---CCHHHHHHHHHH
Q psy4285 19 KITPAIQSRC-TRFRFGPLDSSLIMSRLDY----VIE---------QEKVNVTPDGKKAIIDLSD---GDMRKVLNILQS 81 (533)
Q Consensus 19 ~i~~~i~SRc-~~~~~~~~~~~~~~~~l~~----~~~---------~~~~~~~~~~~~~~~~~~~---g~~r~a~~~l~~ 81 (533)
.+.|++.||| .++.|++++.+++..++.. ++. ..++.+++++++.|+..+. |++|...+.++.
T Consensus 255 ~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~ 334 (376)
T 1um8_A 255 GLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIED 334 (376)
T ss_dssp TCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHH
T ss_pred CCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 4789999999 9999999999999998862 221 1235688999999999876 999999999998
Q ss_pred HHH
Q psy4285 82 AAT 84 (533)
Q Consensus 82 ~~~ 84 (533)
+..
T Consensus 335 ~~~ 337 (376)
T 1um8_A 335 FCL 337 (376)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 235
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.42 E-value=0.0025 Score=58.81 Aligned_cols=23 Identities=35% Similarity=0.671 Sum_probs=21.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.|+||+||||+++.+++.+
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 236
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.42 E-value=0.0023 Score=57.81 Aligned_cols=22 Identities=45% Similarity=0.791 Sum_probs=20.8
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
++|.||||+||+|.|+.+++.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 237
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.40 E-value=0.002 Score=58.79 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=21.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.|+||+||||+++.+++.+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 238
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.37 E-value=0.0018 Score=57.93 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.|+||+||||+++.+++.+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 239
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.36 E-value=0.002 Score=60.33 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|+||+||||+++.+++.+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 38999999999999999999987
No 240
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=96.35 E-value=0.011 Score=58.77 Aligned_cols=41 Identities=20% Similarity=0.346 Sum_probs=26.2
Q ss_pred CCcEEEEEeCCCCCCH--HHHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 370 SSYKLIILDEADAMTN--DAQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~--~~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
...+++|+||+|.+.. .....+..++...+.+..+++.|..
T Consensus 144 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 186 (395)
T 3pey_A 144 QKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSAT 186 (395)
T ss_dssp TTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred ccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEec
Confidence 4578999999998754 2233444455544566677766643
No 241
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.33 E-value=0.0015 Score=57.62 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=17.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|+|+||+||||+++.+++.+
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999887
No 242
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.33 E-value=0.0022 Score=57.76 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=21.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|+|+||+||||+++.+++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999886
No 243
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.33 E-value=0.0028 Score=55.49 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.||||+||||+++.++..+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh
Confidence 48899999999999999999876
No 244
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.0031 Score=63.56 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=51.8
Q ss_pred cCccccccCCCChhhHHHHHHHHHhcccccceeeeecCCcccchhhhH-----HHHhhhhhcccccCCCceEEEEcCccc
Q psy4285 139 SDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVR-----DQIFQFASTKTMHKSSYKLIILDEADA 213 (533)
Q Consensus 139 ~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~~~~e~nasd~~g~~~~~-----d~i~~~a~~~~l~~~~~~~iilDE~d~ 213 (533)
..+..+||||||||..+.+++..+. ..++.++++++.+...+. ..+...|. ...|.++++||+|.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~~-----~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~-----~~~P~IifiDEiDa 285 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATIG-----ANFIFSPASGIVDKYIGESARIIREMFAYAK-----EHEPCIIFMDEVDA 285 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEGGGTCCSSSSHHHHHHHHHHHHHH-----HSCSEEEEEECCCS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEehhhhccccchHHHHHHHHHHHHHH-----hcCCceeeeecccc
Confidence 4467889999999999999999988 688999999887766655 22222222 23577999999999
Q ss_pred cCH
Q psy4285 214 MTN 216 (533)
Q Consensus 214 l~~ 216 (533)
+..
T Consensus 286 i~~ 288 (437)
T 4b4t_L 286 IGG 288 (437)
T ss_dssp SSC
T ss_pred ccc
Confidence 863
No 245
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.31 E-value=0.0024 Score=56.78 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=21.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|+|+||+||||+++.+++.+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 246
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.30 E-value=0.0073 Score=52.72 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=16.3
Q ss_pred ceeEeCCCCCChHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILA 325 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~ 325 (533)
.+.+.||+|+||||+++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999999993
No 247
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.30 E-value=0.01 Score=69.37 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=43.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCc---------------------hhHHHHHHHHHHhccc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRG---------------------IGIVRDQIFQFASTKT 366 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~ 366 (533)
.++++||||||||++|..++...... +..++.++...... ...+.+.+..+...
T Consensus 36 i~lI~G~pGsGKT~LAlqla~~~~~~---G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~~-- 110 (1706)
T 3cmw_A 36 IVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS-- 110 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhC---CCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHhc--
Confidence 48999999999999999998775433 33344444332211 12222333332221
Q ss_pred CCCCCcEEEEEeCCCCCCH
Q psy4285 367 MHKSSYKLIILDEADAMTN 385 (533)
Q Consensus 367 ~~~~~~~vliiDE~d~l~~ 385 (533)
...++||||++..+..
T Consensus 111 ---~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 111 ---GAVDVIVVDSVAALTP 126 (1706)
T ss_dssp ---TCCSEEEESCSTTCCC
T ss_pred ---cCCCEEEEcchhhhcc
Confidence 3467999999998854
No 248
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.0029 Score=63.74 Aligned_cols=67 Identities=24% Similarity=0.224 Sum_probs=51.1
Q ss_pred cCccccccCCCChhhHHHHHHHHHhcccccceeeeecCCcccchhhhH-H----HHhhhhhcccccCCCceEEEEcCccc
Q psy4285 139 SDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVR-D----QIFQFASTKTMHKSSYKLIILDEADA 213 (533)
Q Consensus 139 ~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~~~~e~nasd~~g~~~~~-d----~i~~~a~~~~l~~~~~~~iilDE~d~ 213 (533)
..+.++||||||||..+.|++..+. ..++.++++++.+..++. . .+...|.. .+|.++++||+|.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~~-----~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~-----~aP~IifiDEiDa 285 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQTN-----ATFLKLAAPQLVQMYIGEGAKLVRDAFALAKE-----KAPTIIFIDELDA 285 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHH-----HCSEEEEEECTHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHHhC-----CCEEEEehhhhhhcccchHHHHHHHHHHHHHh-----cCCeEEeecchhh
Confidence 3477899999999999999999988 689999999987776655 2 22222322 2467999999998
Q ss_pred cC
Q psy4285 214 MT 215 (533)
Q Consensus 214 l~ 215 (533)
+.
T Consensus 286 l~ 287 (434)
T 4b4t_M 286 IG 287 (434)
T ss_dssp HH
T ss_pred hh
Confidence 74
No 249
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.29 E-value=0.029 Score=52.37 Aligned_cols=93 Identities=16% Similarity=0.094 Sum_probs=71.0
Q ss_pred CCCceEEEEEcCCCCcCchhhhc--cc-eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHH-HHHHHHHhcCC-CHHHHHHH
Q psy4285 4 FTTNVRFCIICNYLSKITPAIQS--RC-TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPD-GKKAIIDLSDG-DMRKVLNI 78 (533)
Q Consensus 4 ~~~~~~~il~~~~~~~i~~~i~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~g-~~r~a~~~ 78 (533)
.+.++++|.+||.+..+-|++++ |+ ..+.|+.|+.++..++++..+.... ++++ .+..++..+.| +.|...++
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHcCCCCHHHHHHH
Confidence 35678899999999999999988 76 6788999999998888887765433 3333 36778999999 99999999
Q ss_pred HHHHHHhC----CCCcchhhHHhh
Q psy4285 79 LQSAATAH----ADEVNEDTIFTL 98 (533)
Q Consensus 79 l~~~~~~~----~~~i~~~~i~~~ 98 (533)
++.+.... ...|+.+.+.+.
T Consensus 225 ~~~a~~~a~~~~~~~i~~~~~~~a 248 (257)
T 1lv7_A 225 VNEAALFAARGNKRVVSMVEFEKA 248 (257)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHH
Confidence 88875532 245777776543
No 250
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.28 E-value=0.0022 Score=58.69 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=22.2
Q ss_pred CceeEeCCCCCChHHHHHHHHHHH
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l 330 (533)
..++|.||||+||||+++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
No 251
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.28 E-value=0.0023 Score=57.94 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=22.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.++|.|+||+||||+++.+++.+.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999999874
No 252
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.27 E-value=0.0099 Score=56.21 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=32.3
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhcC--CCcEEEEEeCCCC
Q psy4285 370 SSYKLIILDEA-DAMTNDAQNALRRIIEKFT--TNVRFCIICNYLS 412 (533)
Q Consensus 370 ~~~~vliiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~I~~~n~~~ 412 (533)
..+++|++||- ..+++..+..+.+.+.+.. .+..+|++|....
T Consensus 160 ~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 45889999996 5688888888888776532 2567888887765
No 253
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.27 E-value=0.0012 Score=63.43 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=31.5
Q ss_pred CcEEEEEeCC-CCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q psy4285 371 SYKLIILDEA-DAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412 (533)
Q Consensus 371 ~~~vliiDE~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~ 412 (533)
.+++|++||. ..++......+.+.+.+...+..+|++|.+..
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 4789999997 56788888888888776545567788887554
No 254
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.27 E-value=0.01 Score=64.82 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=18.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
++++.||+|+|||+++..++..
T Consensus 111 ~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999977666443
No 255
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.26 E-value=0.002 Score=59.25 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.|+||+||||+++.+++.+
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999886
No 256
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.24 E-value=0.01 Score=62.69 Aligned_cols=78 Identities=12% Similarity=0.062 Sum_probs=52.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhc-cc----CCCCCcEEEEEeCCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST-KT----MHKSSYKLIILDEADA 382 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~vliiDE~d~ 382 (533)
..+++|++|.|||+++-.++..+.. . ..+.+++....+.+.+........ .+ ......++|||||+-+
T Consensus 194 ~~vlta~RGRGKSa~lG~~~a~~~~------~-~~vtAP~~~a~~~l~~~~~~~i~~~~Pd~~~~~~~~~dlliVDEAAa 266 (671)
T 2zpa_A 194 VAAVTAARGRGKSALAGQLISRIAG------R-AIVTAPAKASTDVLAQFAGEKFRFIAPDALLASDEQADWLVVDEAAA 266 (671)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSS------C-EEEECSSCCSCHHHHHHHGGGCCBCCHHHHHHSCCCCSEEEEETGGG
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHh------C-cEEECCCHHHHHHHHHHhhCCeEEeCchhhhhCcccCCEEEEEchhc
Confidence 4799999999999999999887732 2 256677767777666543221110 00 0123478999999999
Q ss_pred CCHHHHHHHH
Q psy4285 383 MTNDAQNALR 392 (533)
Q Consensus 383 l~~~~~~~Ll 392 (533)
++......|+
T Consensus 267 Ip~pll~~ll 276 (671)
T 2zpa_A 267 IPAPLLHQLV 276 (671)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9987554444
No 257
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.21 E-value=0.0026 Score=57.82 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=21.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 258
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.21 E-value=0.0029 Score=56.04 Aligned_cols=24 Identities=38% Similarity=0.438 Sum_probs=22.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.++|.|+||+||||+++.++..+.
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999874
No 259
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.20 E-value=0.018 Score=51.75 Aligned_cols=36 Identities=11% Similarity=0.238 Sum_probs=28.3
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEe
Q psy4285 370 SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~ 408 (533)
...++++|||++.++.+....+.++.+ .+..+|+.+
T Consensus 100 ~~~dvV~IDEaQFf~~~~v~~l~~la~---~gi~Vi~~G 135 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFDDEIVSIVEKLSA---DGHRVIVAG 135 (219)
T ss_dssp TTCSEEEECCGGGSCTHHHHHHHHHHH---TTCEEEEEE
T ss_pred cCCCEEEEechhcCCHHHHHHHHHHHH---CCCEEEEee
Confidence 456899999999999887777777663 457777776
No 260
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.19 E-value=0.0026 Score=57.13 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.+.|.||+|+||||+++.++..+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999884
No 261
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.19 E-value=0.0068 Score=55.99 Aligned_cols=42 Identities=24% Similarity=0.466 Sum_probs=26.4
Q ss_pred CCcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCCcEEEEEeCCC
Q psy4285 370 SSYKLIILDEADAMTND-AQNALRRIIEKFTTNVRFCIICNYL 411 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~n~~ 411 (533)
...+++|+||+|.+... ....+..++...+.+..+++.|...
T Consensus 172 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~ 214 (237)
T 3bor_A 172 KWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATM 214 (237)
T ss_dssp TTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSC
T ss_pred ccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEec
Confidence 45689999999987432 2234455555555667777766543
No 262
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.0048 Score=61.57 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=52.1
Q ss_pred cCccccccCCCChhhHHHHHHHHHhcccccceeeeecCCcccchhhhH-HH----HhhhhhcccccCCCceEEEEcCccc
Q psy4285 139 SDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVR-DQ----IFQFASTKTMHKSSYKLIILDEADA 213 (533)
Q Consensus 139 ~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~~~~e~nasd~~g~~~~~-d~----i~~~a~~~~l~~~~~~~iilDE~d~ 213 (533)
..+.++||||||||..+.|++..+. ..++.++++++.+..++. .+ +...|. ..+|.++++||+|.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~~-----~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar-----~~aP~IIfiDEiDa 286 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQTS-----ATFLRIVGSELIQKYLGDGPRLCRQIFKVAG-----ENAPSIVFIDEIDA 286 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHHT-----CEEEEEESGGGCCSSSSHHHHHHHHHHHHHH-----HTCSEEEEEEEESS
T ss_pred CCCceECCCCchHHHHHHHHHHHhC-----CCEEEEEHHHhhhccCchHHHHHHHHHHHHH-----hcCCcEEEEehhhh
Confidence 4477899999999999999999988 688999999987776666 22 222222 23577999999999
Q ss_pred cCH
Q psy4285 214 MTN 216 (533)
Q Consensus 214 l~~ 216 (533)
+..
T Consensus 287 i~~ 289 (437)
T 4b4t_I 287 IGT 289 (437)
T ss_dssp SSC
T ss_pred hcc
Confidence 863
No 263
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.18 E-value=0.0032 Score=67.62 Aligned_cols=26 Identities=38% Similarity=0.620 Sum_probs=21.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTK 333 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~ 333 (533)
..|+.||||||||+++-.+...+...
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~ 232 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQ 232 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 47999999999999888777776543
No 264
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.16 E-value=0.0037 Score=57.24 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.9
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
++|.|+||+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
No 265
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.16 E-value=0.025 Score=52.78 Aligned_cols=81 Identities=15% Similarity=0.056 Sum_probs=65.6
Q ss_pred CCCceEEEEEcCCCCcCchhhhc--cc-eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHH-HHHHHHhcCCC-HHHHHHH
Q psy4285 4 FTTNVRFCIICNYLSKITPAIQS--RC-TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG-KKAIIDLSDGD-MRKVLNI 78 (533)
Q Consensus 4 ~~~~~~~il~~~~~~~i~~~i~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~g~-~r~a~~~ 78 (533)
++.++++|.+||.+..+.+++++ |+ ..+.|++|+.++..+++++.+.+.+...+.+. ...++..+.|. .+...++
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 35678999999999999999999 98 78999999999999999998888777766553 47788888875 4566666
Q ss_pred HHHHHH
Q psy4285 79 LQSAAT 84 (533)
Q Consensus 79 l~~~~~ 84 (533)
++.+..
T Consensus 222 ~~~a~~ 227 (262)
T 2qz4_A 222 CNEAAL 227 (262)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 666654
No 266
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.13 E-value=0.003 Score=56.73 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=21.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.|+||+||||+++.+++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 37899999999999999999987
No 267
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.12 E-value=0.0031 Score=56.33 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=21.1
Q ss_pred eeEeCCCCCChHHHHHHHHHHHc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~ 331 (533)
+.|+|++|+||||+++.+++.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999873
No 268
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.11 E-value=0.003 Score=56.16 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.8
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
+.|+|+||+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 269
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.09 E-value=0.0087 Score=53.76 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=26.5
Q ss_pred CCcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCCcEEEEEeCCC
Q psy4285 370 SSYKLIILDEADAMTND-AQNALRRIIEKFTTNVRFCIICNYL 411 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~n~~ 411 (533)
...+++|+||+|.+... ....+..++...+.+..+++.|...
T Consensus 143 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 185 (207)
T 2gxq_A 143 SRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATL 185 (207)
T ss_dssp TTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSC
T ss_pred hhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEec
Confidence 45789999999987432 2334455555555566666666443
No 270
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.08 E-value=0.013 Score=57.17 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=49.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCC------C--------chhHHHHHHHHHHhcccCCCCCcE
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD------R--------GIGIVRDQIFQFASTKTMHKSSYK 373 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~ 373 (533)
.+.+.||+|+||||+.++++..+... ...+.++.... . +....+..+.... ...++
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~----~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL------~~~p~ 242 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKE----ERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCL------RMRPD 242 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTT----SCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHT------TSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCC----CcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHh------hhCCC
Confidence 68999999999999999998765221 12222222110 0 1112222232221 13578
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q psy4285 374 LIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412 (533)
Q Consensus 374 vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~ 412 (533)
++++||.-. .+... +++.+.. .+..+++++...+
T Consensus 243 ilildE~~~--~e~~~-~l~~~~~--g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 243 RIILGELRS--SEAYD-FYNVLCS--GHKGTLTTLHAGS 276 (330)
T ss_dssp EEEECCCCS--THHHH-HHHHHHT--TCCCEEEEEECSS
T ss_pred EEEEcCCCh--HHHHH-HHHHHhc--CCCEEEEEEcccH
Confidence 999999876 33333 3444432 2334666766544
No 271
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.08 E-value=0.0027 Score=57.48 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
.++|+|+||+||||+++.+++.+..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999998743
No 272
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.08 E-value=0.023 Score=56.35 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=21.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.+++.||+|+||||++++++..+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 489999999999999999998764
No 273
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.07 E-value=0.019 Score=56.31 Aligned_cols=43 Identities=14% Similarity=0.301 Sum_probs=30.5
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhcC--CCcEEEEEeCCCC
Q psy4285 370 SSYKLIILDEA-DAMTNDAQNALRRIIEKFT--TNVRFCIICNYLS 412 (533)
Q Consensus 370 ~~~~vliiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~I~~~n~~~ 412 (533)
..+++|++||- ..|+......+.+.+.+.. .+..+|++|....
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 207 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE 207 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 45789999995 6788888777777765432 2467888886543
No 274
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.06 E-value=0.024 Score=52.91 Aligned_cols=42 Identities=17% Similarity=0.319 Sum_probs=31.0
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhcC-CCcEEEEEeCCC
Q psy4285 370 SSYKLIILDEA-DAMTNDAQNALRRIIEKFT-TNVRFCIICNYL 411 (533)
Q Consensus 370 ~~~~vliiDE~-d~l~~~~~~~Ll~~le~~~-~~~~~I~~~n~~ 411 (533)
..++++++||- ..+++..+..+.+.+.+.. .+..+|++|...
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 206 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 206 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 45789999996 5778888888888776542 356778887654
No 275
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.06 E-value=0.0045 Score=56.68 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=21.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.|+||+|+||||+++.+++.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999877
No 276
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.05 E-value=0.031 Score=57.01 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.8
Q ss_pred eeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~ 332 (533)
+++.|+||+|||+++..++..+..
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999987754
No 277
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.04 E-value=0.013 Score=55.98 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.1
Q ss_pred eeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~ 332 (533)
++++||||+|||+++..++.....
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~ 54 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMR 54 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 799999999999999998877643
No 278
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.04 E-value=0.0031 Score=56.90 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=21.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.||||+||||+++.+++.+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999876
No 279
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.02 E-value=0.0026 Score=56.55 Aligned_cols=22 Identities=45% Similarity=0.579 Sum_probs=20.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+.+.||||+||||+++.++..
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4889999999999999999875
No 280
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.02 E-value=0.015 Score=57.07 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=26.8
Q ss_pred CCcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCCcEEEEEeCCC
Q psy4285 370 SSYKLIILDEADAMTND-AQNALRRIIEKFTTNVRFCIICNYL 411 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~n~~ 411 (533)
...+++|+||+|.+... ....+.+++...+.+..+++.|..+
T Consensus 146 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 188 (367)
T 1hv8_A 146 KNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATM 188 (367)
T ss_dssp TSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSC
T ss_pred ccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeecc
Confidence 45689999999987432 2344555555555667777666443
No 281
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.98 E-value=0.0045 Score=55.19 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=20.7
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
+.++|++|+||||+++.+++.+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 7899999999999999999976
No 282
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.97 E-value=0.018 Score=58.15 Aligned_cols=25 Identities=40% Similarity=0.484 Sum_probs=22.4
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~ 331 (533)
..+++.|+||+||||++..+|..+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999998874
No 283
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.0078 Score=60.65 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=51.3
Q ss_pred cCccccccCCCChhhHHHHHHHHHhcccccceeeeecCCcccchhhhH-H----HHhhhhhcccccCCCceEEEEcCccc
Q psy4285 139 SDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVR-D----QIFQFASTKTMHKSSYKLIILDEADA 213 (533)
Q Consensus 139 ~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~~~~e~nasd~~g~~~~~-d----~i~~~a~~~~l~~~~~~~iilDE~d~ 213 (533)
..+.++||||||||..+.+++..+. ..++.++++++.+..++. . .+...|. ..+|.++++||+|.
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~~-----~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar-----~~aP~IIfiDEiDa 313 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRTD-----ATFIRVIGSELVQKYVGEGARMVRELFEMAR-----TKKACIIFFDEIDA 313 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHHT-----CEEEEEEGGGGCCCSSSHHHHHHHHHHHHHH-----HTCSEEEEEECCTT
T ss_pred CceEeeCCCCCcHHHHHHHHHhccC-----CCeEEEEhHHhhcccCCHHHHHHHHHHHHHH-----hcCCceEeeccccc
Confidence 3467899999999999999999988 688999999887776655 2 2222222 23567999999998
Q ss_pred cC
Q psy4285 214 MT 215 (533)
Q Consensus 214 l~ 215 (533)
+.
T Consensus 314 i~ 315 (467)
T 4b4t_H 314 VG 315 (467)
T ss_dssp TS
T ss_pred cc
Confidence 86
No 284
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.97 E-value=0.014 Score=54.31 Aligned_cols=41 Identities=17% Similarity=0.347 Sum_probs=25.4
Q ss_pred CCcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 370 SSYKLIILDEADAMTND-AQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
...+++|+||+|.+... ....+.+++...+.+..+++.|..
T Consensus 185 ~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT 226 (249)
T 3ber_A 185 RALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSAT 226 (249)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESS
T ss_pred cccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEecc
Confidence 45679999999977442 233455555554555666655543
No 285
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.97 E-value=0.0094 Score=56.02 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=25.6
Q ss_pred CCcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCCcEEEEEeC
Q psy4285 370 SSYKLIILDEADAMTND-AQNALRRIIEKFTTNVRFCIICN 409 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~n 409 (533)
...+++||||+|.+... ....+..++...+....+++.|-
T Consensus 200 ~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SA 240 (262)
T 3ly5_A 200 KNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSA 240 (262)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECS
T ss_pred ccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEe
Confidence 45789999999987543 23344555555556666666554
No 286
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.97 E-value=0.0046 Score=59.59 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.||+|+||||+++.+|+.+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999987
No 287
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.97 E-value=0.0043 Score=60.74 Aligned_cols=42 Identities=19% Similarity=0.326 Sum_probs=30.6
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhcC--CCcEEEEEeCCC
Q psy4285 370 SSYKLIILDEA-DAMTNDAQNALRRIIEKFT--TNVRFCIICNYL 411 (533)
Q Consensus 370 ~~~~vliiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~I~~~n~~ 411 (533)
..+++|++||- ..++......+.+.+.+.. .+..+|++|...
T Consensus 144 ~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~ 188 (348)
T 3d31_A 144 TNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188 (348)
T ss_dssp SCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 45789999995 6788888877777776532 256788888654
No 288
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=95.96 E-value=0.013 Score=60.84 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=26.3
Q ss_pred CCcEEEEEeCCCCCCH--HHHHHHHHHHHhcCCCcEEEEEeCCC
Q psy4285 370 SSYKLIILDEADAMTN--DAQNALRRIIEKFTTNVRFCIICNYL 411 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~--~~~~~Ll~~le~~~~~~~~I~~~n~~ 411 (533)
...+++||||+|.+.. .....+..++...+.+..+|+.|-.+
T Consensus 258 ~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~ 301 (508)
T 3fho_A 258 RDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATF 301 (508)
T ss_dssp TTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred cCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCC
Confidence 4578999999998754 22333444454445567777666443
No 289
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.96 E-value=0.0053 Score=57.19 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=22.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.|.|++|+||||+++.++..+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 69999999999999999999987
No 290
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.96 E-value=0.024 Score=55.68 Aligned_cols=43 Identities=9% Similarity=0.203 Sum_probs=30.7
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhcC--CCcEEEEEeCCCC
Q psy4285 370 SSYKLIILDEA-DAMTNDAQNALRRIIEKFT--TNVRFCIICNYLS 412 (533)
Q Consensus 370 ~~~~vliiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~I~~~n~~~ 412 (533)
..++++++||- ..++......+.+.+.+.. .+..+|++|....
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (362)
T 2it1_A 150 KEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA 195 (362)
T ss_dssp TCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 45789999995 6788888777777775432 2467888887543
No 291
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.94 E-value=0.0034 Score=56.90 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=22.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.++|+|+||+||||+++.+++.+.
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999874
No 292
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.94 E-value=0.016 Score=55.72 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=26.1
Q ss_pred CCcEEEEEeCCCCCCH--HHHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 370 SSYKLIILDEADAMTN--DAQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~--~~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
...++|||||+|.+.. .....+..++...+.++.+++.|-.
T Consensus 234 ~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT 276 (300)
T 3fmo_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSAT 276 (300)
T ss_dssp GGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESC
T ss_pred hhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEecc
Confidence 3567999999998754 2334444555544566777766643
No 293
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.93 E-value=0.023 Score=55.80 Aligned_cols=43 Identities=12% Similarity=0.247 Sum_probs=30.5
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhcC--CCcEEEEEeCCCC
Q psy4285 370 SSYKLIILDEA-DAMTNDAQNALRRIIEKFT--TNVRFCIICNYLS 412 (533)
Q Consensus 370 ~~~~vliiDE~-d~l~~~~~~~Ll~~le~~~--~~~~~I~~~n~~~ 412 (533)
..+++|++||- ..++......+.+.+.+.. .+..+|++|....
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (359)
T 2yyz_A 150 KQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA 195 (359)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 45789999995 5788888777777765432 2467888886543
No 294
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.90 E-value=0.03 Score=54.92 Aligned_cols=43 Identities=14% Similarity=0.325 Sum_probs=32.3
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhc--CCCcEEEEEeCCCC
Q psy4285 370 SSYKLIILDEA-DAMTNDAQNALRRIIEKF--TTNVRFCIICNYLS 412 (533)
Q Consensus 370 ~~~~vliiDE~-d~l~~~~~~~Ll~~le~~--~~~~~~I~~~n~~~ 412 (533)
..+++|++||. ..|++..+..+++++.+. ..+..+|++|....
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD 225 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 46889999996 567888888888887653 23577888887544
No 295
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.90 E-value=0.023 Score=51.93 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=26.2
Q ss_pred CCcEEEEEeCCCCCCHHH-HHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 370 SSYKLIILDEADAMTNDA-QNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~~-~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
...+++|+||+|.+.... ...+.+++...+.+..+++.|-.
T Consensus 166 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 207 (228)
T 3iuy_A 166 RSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSAT 207 (228)
T ss_dssp TTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESC
T ss_pred ccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEee
Confidence 457899999999875432 33455555555556666666543
No 296
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.86 E-value=0.0077 Score=55.34 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=23.8
Q ss_pred CcEEEEEeCCCCCCHH--HHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 371 SYKLIILDEADAMTND--AQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 371 ~~~vliiDE~d~l~~~--~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
..+++|+||+|.+... ....+..++...+....+++.|..
T Consensus 166 ~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT 207 (230)
T 2oxc_A 166 SIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSAT 207 (230)
T ss_dssp GCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESC
T ss_pred cCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEec
Confidence 4579999999987322 233444445544555666655543
No 297
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.85 E-value=0.0066 Score=56.71 Aligned_cols=53 Identities=11% Similarity=0.163 Sum_probs=44.1
Q ss_pred CCceEEEEEcCC----------C-CcCchhhhccceeEEeC--------CCCHHHHHHHHHHHHhhcCCCCCH
Q psy4285 5 TTNVRFCIICNY----------L-SKITPAIQSRCTRFRFG--------PLDSSLIMSRLDYVIEQEKVNVTP 58 (533)
Q Consensus 5 ~~~~~~il~~~~----------~-~~i~~~i~SRc~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~ 58 (533)
...+.+|++||. . ....++|+|||.+|+|. +++++++..++..+ +.+.+++++
T Consensus 188 v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w~-~~~~~~~~~ 259 (267)
T 1u0j_A 188 IDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWA-KDHVVEVEH 259 (267)
T ss_dssp ECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHHHH-HHTCCCCCC
T ss_pred ccCCCEEEEecCCcccccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHHHH-HHcCCCCcc
Confidence 367789999987 2 37889999999999999 89999999999966 667666554
No 298
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.85 E-value=0.0035 Score=56.29 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.|+||+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999876
No 299
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.83 E-value=0.0067 Score=55.72 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=21.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.+.||||+||||+++.+++.+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 300
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.83 E-value=0.0044 Score=54.60 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.|.||+|+||||+++.++..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37899999999999999999865
No 301
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.0072 Score=60.79 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=49.9
Q ss_pred ccccccCCCChhhHHHHHHHHHhcccccceeeeecCCcccchhhhH--H---HHhhhhhcccccCCCceEEEEcCccccC
Q psy4285 141 IEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVR--D---QIFQFASTKTMHKSSYKLIILDEADAMT 215 (533)
Q Consensus 141 ~~~~~~~G~~~~~~l~~~~~~~~~~~~~~~~~e~nasd~~g~~~~~--d---~i~~~a~~~~l~~~~~~~iilDE~d~l~ 215 (533)
+..+||||||||..+.+++..+. ..++.+++++..+...+. . .+-..|.. ..|.++++||+|.+.
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~-----~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~-----~aP~IifiDEiD~i~ 278 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTK-----AAFIRVNGSEFVHKYLGEGPRMVRDVFRLARE-----NAPSIIFIDEVDSIA 278 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHT-----CEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHH-----TCSEEEEEECTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-----CCeEEEecchhhccccchhHHHHHHHHHHHHH-----cCCCeeechhhhhhh
Confidence 67899999999999999999987 689999999887766555 2 23222322 357799999999774
No 302
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.82 E-value=0.0042 Score=55.87 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.++|++|+||||+++.++. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 478999999999999999998 6
No 303
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.80 E-value=0.005 Score=57.28 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=21.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.|.||+|+||||+++.+++.+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
No 304
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.78 E-value=0.0048 Score=54.76 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.8
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
++|.||+|+||||+++.++...
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 6899999999999999998743
No 305
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.77 E-value=0.033 Score=53.53 Aligned_cols=92 Identities=16% Similarity=0.247 Sum_probs=67.9
Q ss_pred CCceEEEEEcCCC-------CcCchhhhccc--eeEEeCCCC--HHHHHHHHHHHH----hhcC---CCCCHHHHHHHHH
Q psy4285 5 TTNVRFCIICNYL-------SKITPAIQSRC--TRFRFGPLD--SSLIMSRLDYVI----EQEK---VNVTPDGKKAIID 66 (533)
Q Consensus 5 ~~~~~~il~~~~~-------~~i~~~i~SRc--~~~~~~~~~--~~~~~~~l~~~~----~~~~---~~~~~~~~~~~~~ 66 (533)
+.++++|++||.. ...-+.|.+|+ ..+.++|+. .+|+...+.+.+ ...+ ..+++++++.+..
T Consensus 135 ~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 135 SVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp BCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred cCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 4578999999976 24567899997 446688887 566666555443 3332 4688999999999
Q ss_pred hc-CCCHHHHHHHHHHHHHhCC-CCcchhhHH
Q psy4285 67 LS-DGDMRKVLNILQSAATAHA-DEVNEDTIF 96 (533)
Q Consensus 67 ~~-~g~~r~a~~~l~~~~~~~~-~~i~~~~i~ 96 (533)
++ .||+|...|.++.++.... ..|+.+.+.
T Consensus 215 ~~wpGnvReL~~~l~~~~~~~~~~~i~~~~l~ 246 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVVLLTGEYISERELP 246 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHHHCCSSSBCGGGSC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccHHhhh
Confidence 98 9999999999999887543 347666653
No 306
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.76 E-value=0.0087 Score=54.45 Aligned_cols=42 Identities=14% Similarity=0.348 Sum_probs=26.1
Q ss_pred CCcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCCcEEEEEeCCC
Q psy4285 370 SSYKLIILDEADAMTND-AQNALRRIIEKFTTNVRFCIICNYL 411 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~n~~ 411 (533)
...+++|+||+|.+... ....+..++...+.+..+++.|...
T Consensus 149 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 191 (219)
T 1q0u_A 149 HTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATI 191 (219)
T ss_dssp GGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCC
T ss_pred CcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCC
Confidence 34679999999987542 2334555555555566666655433
No 307
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.76 E-value=0.0074 Score=54.30 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=21.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.++|++|+||||+++.+++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999999999999999987
No 308
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.73 E-value=0.0068 Score=54.80 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.+.+.||+|+||||+++.++..+.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999998873
No 309
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.72 E-value=0.027 Score=55.90 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=27.2
Q ss_pred CCcEEEEEeCCCCCCH--HHHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 370 SSYKLIILDEADAMTN--DAQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~--~~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
...+++|+||+|.+.. .....+..++...+....+++.|..
T Consensus 151 ~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 193 (391)
T 1xti_A 151 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 193 (391)
T ss_dssp TTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESS
T ss_pred cccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEee
Confidence 4678999999998854 4445555666555556666666543
No 310
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.72 E-value=0.006 Score=53.59 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=21.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.|+|++|+||||+++.++..+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999976
No 311
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.72 E-value=0.042 Score=54.80 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=18.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
++++.+|+|+|||..+-..+...
T Consensus 60 ~~li~a~TGsGKT~~~~~~~~~~ 82 (400)
T 1s2m_A 60 DILARAKNGTGKTAAFVIPTLEK 82 (400)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHHHHH
Confidence 59999999999998766555443
No 312
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.71 E-value=0.0057 Score=55.10 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=18.9
Q ss_pred eeEeCCCCCChHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACAR 328 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~ 328 (533)
+.|+||+|+||||+++.++.
T Consensus 5 i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999987
No 313
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.69 E-value=0.0054 Score=55.45 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.|.||+|+||||+++.++..+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 37899999999999999999865
No 314
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.68 E-value=0.022 Score=54.52 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.+.|.||+|+||||++..+|..+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999998875
No 315
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.67 E-value=0.0062 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.||+|+||||+++.+.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38999999999999999998765
No 316
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.63 E-value=0.0055 Score=65.02 Aligned_cols=43 Identities=23% Similarity=0.361 Sum_probs=33.1
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q psy4285 370 SSYKLIILDEA-DAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412 (533)
Q Consensus 370 ~~~~vliiDE~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~ 412 (533)
.+++++++||. ..+++.....+.+.+.+...+..+|++|.+.+
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 551 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLN 551 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTT
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 35789999997 56788888888887776545677888888765
No 317
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.59 E-value=0.021 Score=57.30 Aligned_cols=41 Identities=24% Similarity=0.451 Sum_probs=27.0
Q ss_pred CCcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 370 SSYKLIILDEADAMTND-AQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
...+++|+||+|.+... ....+..++...+.+..+|+.|-.
T Consensus 182 ~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 223 (414)
T 3eiq_A 182 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSAT 223 (414)
T ss_dssp TTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSC
T ss_pred ccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 34689999999987433 234455566655567777776643
No 318
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.58 E-value=0.0061 Score=54.79 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.|.||+|+||||+++.++..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 47899999999999999999865
No 319
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.57 E-value=0.022 Score=48.93 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=20.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||++++.+...-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998654
No 320
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.57 E-value=0.0068 Score=54.43 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.|.||+|+||||+++.++..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 37899999999999999999864
No 321
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=95.54 E-value=0.034 Score=55.64 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=24.9
Q ss_pred CCcEEEEEeCCCCCCH--HHHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 370 SSYKLIILDEADAMTN--DAQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~--~~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
...+++|+||+|.+.. .....+..++...+.+..+++.|-.
T Consensus 167 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 209 (412)
T 3fht_A 167 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSAT 209 (412)
T ss_dssp GGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESC
T ss_pred hhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEee
Confidence 3578999999997632 2233344444444566677766643
No 322
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.53 E-value=0.026 Score=52.23 Aligned_cols=40 Identities=23% Similarity=0.388 Sum_probs=24.5
Q ss_pred CCcEEEEEeCCCCCCHH----HHHHHHHHHHhc-CCCcEEEEEeC
Q psy4285 370 SSYKLIILDEADAMTND----AQNALRRIIEKF-TTNVRFCIICN 409 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~----~~~~Ll~~le~~-~~~~~~I~~~n 409 (533)
...+++|+||+|.+..+ ....+..++... +.+..+++.|-
T Consensus 174 ~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SA 218 (245)
T 3dkp_A 174 ASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSA 218 (245)
T ss_dssp TTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEES
T ss_pred ccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEec
Confidence 35679999999998652 344555555442 23455555543
No 323
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.53 E-value=0.0074 Score=54.65 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.++|.|+||+||||+++.+++.+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 488999999999999999999874
No 324
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.52 E-value=0.083 Score=50.96 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.4
Q ss_pred eeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~ 332 (533)
+++.|+||+|||+++..++.....
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999977643
No 325
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.51 E-value=0.022 Score=60.50 Aligned_cols=96 Identities=15% Similarity=0.203 Sum_probs=70.2
Q ss_pred CCCceEEEEEcCCC--CcCchhhhccce----eEEeCC---CCHHHHHHHHHHHHhhc-----CCCCCHHHHHHHHHhc-
Q psy4285 4 FTTNVRFCIICNYL--SKITPAIQSRCT----RFRFGP---LDSSLIMSRLDYVIEQE-----KVNVTPDGKKAIIDLS- 68 (533)
Q Consensus 4 ~~~~~~~il~~~~~--~~i~~~i~SRc~----~~~~~~---~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~- 68 (533)
.|.++++|++||+. +.+.|+++|||. .+.|++ -+.+.+..+++.++... ...++++++..+++.+
T Consensus 249 ~p~~~~vI~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~ 328 (604)
T 3k1j_A 249 VPCDFVLVAAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQ 328 (604)
T ss_dssp EECCCEEEEEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHH
T ss_pred cceeEEEEEecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHh
Confidence 35689999999987 789999999994 556543 35556777776665432 2568899999998876
Q ss_pred --CC-------CHHHHHHHHHHHHHh----CCCCcchhhHHhhh
Q psy4285 69 --DG-------DMRKVLNILQSAATA----HADEVNEDTIFTLL 99 (533)
Q Consensus 69 --~g-------~~r~a~~~l~~~~~~----~~~~i~~~~i~~~~ 99 (533)
.| ++|.+.++++.+... ....|+.+.+.+.+
T Consensus 329 r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~ 372 (604)
T 3k1j_A 329 KRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAV 372 (604)
T ss_dssp HTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred hhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHH
Confidence 56 699999999987542 23458888776544
No 326
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=95.47 E-value=0.035 Score=56.60 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
++++.+|+|+|||..+-.++....
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~ 48 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRL 48 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999988876653
No 327
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.45 E-value=0.011 Score=54.90 Aligned_cols=22 Identities=41% Similarity=0.394 Sum_probs=19.6
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
++++|+||+|||+++..++...
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 7999999999999999887654
No 328
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.45 E-value=0.014 Score=61.63 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=33.0
Q ss_pred CCcEEEEEeCC-CCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q psy4285 370 SSYKLIILDEA-DAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412 (533)
Q Consensus 370 ~~~~vliiDE~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~ 412 (533)
.+++++++||. ..+++.....+.+.+.+...+..+|++|.+.+
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 540 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLS 540 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 45789999997 46788888888888876555677888887654
No 329
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.45 E-value=0.024 Score=52.09 Aligned_cols=41 Identities=17% Similarity=0.377 Sum_probs=26.0
Q ss_pred CCcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 370 SSYKLIILDEADAMTND-AQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
...+++|+||+|.+... ....+..++...+.+..+++.|..
T Consensus 170 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 211 (236)
T 2pl3_A 170 TDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSAT 211 (236)
T ss_dssp TTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESS
T ss_pred ccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEee
Confidence 45679999999987532 234455556555556666655543
No 330
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.41 E-value=0.079 Score=44.84 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.4
Q ss_pred CceeEeCCCCCChHHHHHHHHHH
Q psy4285 307 PHLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~ 329 (533)
+.+++.|++|+|||++++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999864
No 331
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.41 E-value=0.0076 Score=69.87 Aligned_cols=45 Identities=27% Similarity=0.431 Sum_probs=30.0
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy4285 370 SSYKLIILDEAD-AMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414 (533)
Q Consensus 370 ~~~~vliiDE~d-~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l 414 (533)
.+++++++||+- .++......+.+.+++...+..+|++|++.+.+
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i 616 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTI 616 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTT
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHH
Confidence 457899999983 455554555556665544566778888877643
No 332
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.40 E-value=0.0087 Score=63.31 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=33.5
Q ss_pred CcEEEEEeCC-CCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q psy4285 371 SYKLIILDEA-DAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412 (533)
Q Consensus 371 ~~~vliiDE~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~ 412 (533)
+++++++||. ..+++.....+.+.+.+...+..+|++|.+.+
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~ 539 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIP 539 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChH
Confidence 5789999997 56788888888888877656778888887654
No 333
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.35 E-value=0.0074 Score=58.39 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.||+|+|||+++..+|+.+
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHC
Confidence 48999999999999999999987
No 334
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.33 E-value=0.023 Score=52.52 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=26.3
Q ss_pred CCcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 370 SSYKLIILDEADAMTND-AQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
...+++|+||+|.+... ....+..++...+.+..+++.|-.
T Consensus 175 ~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT 216 (242)
T 3fe2_A 175 RRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 216 (242)
T ss_dssp TTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESC
T ss_pred ccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEee
Confidence 45689999999987543 234455555555556666665543
No 335
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.32 E-value=0.037 Score=55.45 Aligned_cols=41 Identities=22% Similarity=0.394 Sum_probs=26.1
Q ss_pred CCcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 370 SSYKLIILDEADAMTND-AQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
...+++|+||+|.+... ....+..++...+....+++.|-.
T Consensus 178 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 219 (410)
T 2j0s_A 178 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISAT 219 (410)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESC
T ss_pred hheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcC
Confidence 45789999999976432 334555555554556666666543
No 336
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.31 E-value=0.0062 Score=55.45 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=29.8
Q ss_pred chhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHH
Q psy4285 290 SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 290 ~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l 330 (533)
+.+....+.........+.+++.|++|+||||++..++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33344444444444455679999999999999999999886
No 337
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.31 E-value=0.0088 Score=55.86 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=21.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.+.++|++|+||||+++.+++.+.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 378999999999999999999873
No 338
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.29 E-value=0.0085 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.4
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
+.|.||+|+||||+++.++..+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6899999999999999999876
No 339
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.28 E-value=0.043 Score=47.48 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||++++.+...-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998654
No 340
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.28 E-value=0.0097 Score=53.41 Aligned_cols=22 Identities=32% Similarity=0.270 Sum_probs=20.7
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
+.++||+|+||||+++.++..+
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999876
No 341
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.26 E-value=0.01 Score=52.89 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.||+|+||||+++.++...
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 37899999999999999999864
No 342
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.25 E-value=0.021 Score=57.77 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=26.3
Q ss_pred hhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 294 CYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 294 ~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~ 331 (533)
++.+..+.+.+ .++|+||+|+|||+++..++....
T Consensus 142 ID~L~pi~kGq---~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 142 VDLLAPYIKGG---KIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHSCEETTC---EEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHhhhccCC---EEEEECCCCCCccHHHHHHHhhhh
Confidence 44454554433 489999999999999999987653
No 343
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.23 E-value=0.013 Score=54.68 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.|.||+|+||||+++.+++.+
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48899999999999999999887
No 344
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.22 E-value=0.035 Score=48.95 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||++++.+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 38999999999999999998764
No 345
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.22 E-value=0.012 Score=56.00 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=21.3
Q ss_pred eeEeCCCCCChHHHHHHHHHHHc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~ 331 (533)
+++.||+|+|||+++..+|+.+.
T Consensus 13 i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEECCCccCHHHHHHHHHHhCC
Confidence 78999999999999999999873
No 346
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.21 E-value=0.013 Score=56.89 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=21.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.||+|+||||+++.+++.+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 47899999999999999999987
No 347
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.19 E-value=0.013 Score=53.20 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=19.5
Q ss_pred ceeEeCCCCCChHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACAR 328 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~ 328 (533)
.+.|+|++|+||||+++.++.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 348
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.18 E-value=0.0071 Score=57.94 Aligned_cols=71 Identities=10% Similarity=0.160 Sum_probs=43.6
Q ss_pred ccccccCCCChhhHHHHHHHHHhcccccceeeeecCCcccchhhhH--HHHh-hhhhcccc-cCCCceEEEEcCccccCH
Q psy4285 141 IEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVR--DQIF-QFASTKTM-HKSSYKLIILDEADAMTN 216 (533)
Q Consensus 141 ~~~~~~~G~~~~~~l~~~~~~~~~~~~~~~~~e~nasd~~g~~~~~--d~i~-~~a~~~~l-~~~~~~~iilDE~d~l~~ 216 (533)
+...|+||+|||..+.+++..+. ..++.+++++..+...+. ..+. .|...... ....+.++++||+|.+..
T Consensus 39 lLl~GppGtGKT~la~aiA~~l~-----~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHT-----CCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 45679999999999999988886 788999987765543333 2221 12222111 133566999999999875
No 349
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.18 E-value=0.059 Score=58.52 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=18.5
Q ss_pred CceeEeCCCCCChHHHH-HHHHHHH
Q psy4285 307 PHLLFYGPPGTGKTTTI-LACARKL 330 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la-~~la~~l 330 (533)
.++++.||+|+|||+.+ ..+.+.+
T Consensus 40 ~~~lv~apTGsGKT~~~~l~il~~~ 64 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAEIAMVHRI 64 (720)
T ss_dssp CEEEEECCGGGCHHHHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHH
Confidence 36999999999999988 4444443
No 350
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=95.17 E-value=0.032 Score=57.31 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=25.7
Q ss_pred CCcEEEEEeCCCCCCH--HHHHHHHHHHHhcCCCcEEEEEeCCC
Q psy4285 370 SSYKLIILDEADAMTN--DAQNALRRIIEKFTTNVRFCIICNYL 411 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~--~~~~~Ll~~le~~~~~~~~I~~~n~~ 411 (533)
...++|||||+|.+.. .....+..++...+.+..+++.|-.+
T Consensus 234 ~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 277 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATF 277 (479)
T ss_dssp GGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCC
T ss_pred ccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCC
Confidence 4578999999997632 23333444444445667777766443
No 351
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.17 E-value=0.012 Score=52.76 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=21.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.|.||+|+||||+++.++..+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999865
No 352
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.16 E-value=0.012 Score=54.19 Aligned_cols=24 Identities=42% Similarity=0.657 Sum_probs=22.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.++|.||||+||||+++.+++.+.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 388999999999999999999884
No 353
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.13 E-value=0.067 Score=61.03 Aligned_cols=39 Identities=18% Similarity=0.060 Sum_probs=24.5
Q ss_pred hhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHH
Q psy4285 291 MDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 291 ~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~ 329 (533)
...+..+.....++.+.+.++.||+|+|||.++-..+-.
T Consensus 609 ~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~ 647 (1151)
T 2eyq_A 609 AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 647 (1151)
T ss_dssp HHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHH
Confidence 333333333333344446899999999999887655433
No 354
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.08 E-value=0.011 Score=56.80 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|+||+||||+++.+++.+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999999853
No 355
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.08 E-value=0.0099 Score=53.20 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=20.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+.|+|++|+||||+++.+++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 4889999999999999999984
No 356
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.08 E-value=0.033 Score=48.22 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=19.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+++.|++|+|||++++.+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999754
No 357
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.08 E-value=0.012 Score=56.20 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.+++.||+|+|||+++..+|+.+.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhCc
Confidence 378999999999999999999873
No 358
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.08 E-value=0.1 Score=53.00 Aligned_cols=35 Identities=23% Similarity=0.148 Sum_probs=26.0
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcceEEecC
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNA 345 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 345 (533)
+++.|+||+|||+++..++....... +.+++.++.
T Consensus 203 ~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~sl 237 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSL 237 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEC
Confidence 79999999999999999998765432 334444443
No 359
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=95.07 E-value=0.046 Score=56.64 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=20.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
+.++.||+|+|||..+-.++....
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~ 153 (510)
T 2oca_A 130 RRILNLPTSAGRSLIQALLARYYL 153 (510)
T ss_dssp EEEEECCSTTTHHHHHHHHHHHHH
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHH
Confidence 589999999999999987776654
No 360
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.07 E-value=0.045 Score=49.66 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.2
Q ss_pred eeEeCCCCCChHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~ 329 (533)
+++.|.+|+|||+++..+...
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCcCHHHHHHHHHhC
Confidence 899999999999999998754
No 361
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.06 E-value=0.049 Score=55.17 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=17.9
Q ss_pred ceeEeCCCCCChHHHH-HHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTI-LACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la-~~la~~l 330 (533)
++++.||+|+|||..+ ..+.+.+
T Consensus 4 ~~lv~a~TGsGKT~~~l~~~l~~~ 27 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRVLPQLVREA 27 (431)
T ss_dssp EEEEECCTTSCTTTTHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5899999999999986 5455333
No 362
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.06 E-value=0.033 Score=55.34 Aligned_cols=42 Identities=21% Similarity=0.402 Sum_probs=26.4
Q ss_pred CCcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCCcEEEEEeCCC
Q psy4285 370 SSYKLIILDEADAMTND-AQNALRRIIEKFTTNVRFCIICNYL 411 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~-~~~~Ll~~le~~~~~~~~I~~~n~~ 411 (533)
...+++|+||+|.+... ....+.+++...+....+++.|..+
T Consensus 161 ~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 203 (394)
T 1fuu_A 161 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM 203 (394)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSC
T ss_pred hhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEec
Confidence 45789999999987432 2334445555545666677666443
No 363
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.05 E-value=0.056 Score=46.92 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=19.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+++.|++|+|||++++.+...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 364
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.05 E-value=0.0099 Score=52.71 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.||+|+|||++|..+++..
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38999999999999999999875
No 365
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.02 E-value=0.015 Score=55.37 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=21.2
Q ss_pred eeEeCCCCCChHHHHHHHHHHHc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~ 331 (533)
+.+.||+|+||||+++.++..+.
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999998874
No 366
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.00 E-value=0.063 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+++.|++|+|||++++.+...
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999999754
No 367
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.99 E-value=0.042 Score=46.87 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||++++.+...-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998643
No 368
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.99 E-value=0.0053 Score=55.60 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=21.2
Q ss_pred eeEeCCCCCChHHHHHHHHHHHc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~ 331 (533)
+.|.|++|+||||+++.+++.+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999874
No 369
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.98 E-value=0.016 Score=50.21 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=22.2
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~ 331 (533)
+.+.|.|++|+||||++..++..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3478999999999999999999874
No 370
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.98 E-value=0.017 Score=59.34 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
+.++.||+|+|||..+-..+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 48999999999999998887765
No 371
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.96 E-value=0.038 Score=53.61 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.++++||||+|||+++..++....
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHhHHHHHHHHHHh
Confidence 379999999999999999998753
No 372
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.96 E-value=0.019 Score=62.37 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=17.5
Q ss_pred CceeEeCCCCCChHHHHHHHH
Q psy4285 307 PHLLFYGPPGTGKTTTILACA 327 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la 327 (533)
.++++.||+|+|||+.+-..+
T Consensus 47 ~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHHHH
Confidence 379999999999999985443
No 373
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.96 E-value=0.018 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=21.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.++|++|+||||+++.+++.+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48899999999999999999987
No 374
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.95 E-value=0.051 Score=52.57 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=18.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
++++.+|+|+|||..+-..+..
T Consensus 33 ~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 33 NVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEcCCCCcHHHHHHHHHHh
Confidence 6999999999999877665543
No 375
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.94 E-value=0.026 Score=54.46 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=20.9
Q ss_pred eeEeCCCCCChHHHHHHHHHHHc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~ 331 (533)
+-+.||+|+||||+++.++..+.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 68999999999999999998763
No 376
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.94 E-value=0.016 Score=53.61 Aligned_cols=22 Identities=41% Similarity=0.455 Sum_probs=19.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+.+.||+|+||||+++.++..
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3789999999999999999843
No 377
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.90 E-value=0.013 Score=52.99 Aligned_cols=22 Identities=41% Similarity=0.418 Sum_probs=20.7
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
+.+.||+|+||||+++.++..+
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 378
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.90 E-value=0.014 Score=52.43 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=20.6
Q ss_pred CceeEeCCCCCChHHHHHHHHHHH
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l 330 (533)
-.+++.|++|+|||+++..+....
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHHhCC
Confidence 349999999999999999988643
No 379
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.88 E-value=0.066 Score=52.00 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=21.6
Q ss_pred eeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~ 332 (533)
+++.|+||+|||+++..+|..+..
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999987644
No 380
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.86 E-value=0.023 Score=48.68 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=20.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+||||+++.+...-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998653
No 381
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.85 E-value=0.024 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=21.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.|+|++|+||||+++.+++.+
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999987
No 382
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.84 E-value=0.038 Score=46.96 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+||||+++.+...-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998653
No 383
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.84 E-value=0.06 Score=47.87 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||+++..+...-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999987643
No 384
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.81 E-value=0.014 Score=55.37 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=18.9
Q ss_pred eeEeCCCCCChHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACAR 328 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~ 328 (533)
+.|+|++|+||||+++.++.
T Consensus 78 I~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999994
No 385
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.80 E-value=0.039 Score=58.16 Aligned_cols=43 Identities=21% Similarity=0.394 Sum_probs=33.3
Q ss_pred CcEEEEEeCC-CCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy4285 371 SYKLIILDEA-DAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413 (533)
Q Consensus 371 ~~~vliiDE~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~ 413 (533)
+++++++||. ..+++.....+.+.+.+...+..+|++|.+.+.
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 538 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 538 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 4789999997 567888888888888765556778888877664
No 386
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.79 E-value=0.064 Score=47.69 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+++.|++|+|||+++..+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998754
No 387
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.79 E-value=0.22 Score=47.45 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=21.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
.+.++|++|+||||++..+|..+..
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3678899999999999999988743
No 388
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.79 E-value=0.011 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=20.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.++|++|+||||+++.++..+
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 37899999999999999998754
No 389
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.79 E-value=0.012 Score=68.31 Aligned_cols=44 Identities=18% Similarity=0.426 Sum_probs=35.3
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCCC
Q psy4285 371 SYKLIILDEAD-AMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414 (533)
Q Consensus 371 ~~~vliiDE~d-~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~l 414 (533)
+++||++||+- .++.+....+.+.+++...+..+|+++.+.+.+
T Consensus 1235 ~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi 1279 (1321)
T 4f4c_A 1235 NPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTV 1279 (1321)
T ss_dssp CCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTT
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHH
Confidence 46899999984 567777888888898777788889999877643
No 390
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.79 E-value=0.051 Score=46.46 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=19.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+++.|++|+|||++++.+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 391
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.78 E-value=0.049 Score=48.06 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||++++.+...-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 392
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.78 E-value=0.06 Score=45.80 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||+++..+...-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999987643
No 393
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.77 E-value=0.053 Score=46.38 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||++++.+...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999997653
No 394
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.76 E-value=0.016 Score=59.67 Aligned_cols=25 Identities=4% Similarity=0.057 Sum_probs=22.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
.++|+|.+|+||||+++++++.+..
T Consensus 397 ~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 397 SIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred EEEecccCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999999953
No 395
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.76 E-value=0.055 Score=47.51 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+||||++..++..-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998653
No 396
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=94.74 E-value=0.034 Score=63.14 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=24.5
Q ss_pred CcEEEEEeCCCCCCHHH-HHHHHHHHHhcCCCcEEEEEeC
Q psy4285 371 SYKLIILDEADAMTNDA-QNALRRIIEKFTTNVRFCIICN 409 (533)
Q Consensus 371 ~~~vliiDE~d~l~~~~-~~~Ll~~le~~~~~~~~I~~~n 409 (533)
..++|||||+|++.... ...+..++...+.+..+|+.|-
T Consensus 290 ~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSA 329 (1108)
T 3l9o_A 290 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSA 329 (1108)
T ss_dssp HEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEEC
T ss_pred cCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcC
Confidence 46899999999996543 2233334444455666666553
No 397
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.73 E-value=0.033 Score=47.64 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=18.6
Q ss_pred ceeEeCCCCCChHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACAR 328 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~ 328 (533)
.+++.|+||+|||++++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999998853
No 398
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.73 E-value=0.013 Score=62.02 Aligned_cols=43 Identities=26% Similarity=0.458 Sum_probs=32.7
Q ss_pred CcEEEEEeCC-CCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCC
Q psy4285 371 SYKLIILDEA-DAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413 (533)
Q Consensus 371 ~~~vliiDE~-d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~~ 413 (533)
+++++++||. ..+++.....+.+.+.+...+..+|++|.+.+.
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 541 (582)
T 3b60_A 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST 541 (582)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 4789999997 467888888888887765446678888877653
No 399
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.70 E-value=0.049 Score=59.06 Aligned_cols=100 Identities=21% Similarity=0.284 Sum_probs=51.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc-cccc-c-----------CcceEEecCCCCC--chh-HHHHHHHHHHhcccCCCCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY-TKAQ-F-----------NAMVLELNASDDR--GIG-IVRDQIFQFASTKTMHKSS 371 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~-~~~~-~-----------~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~ 371 (533)
.++++||.|+||||+.+.++.... ...+ + ...+..+...+.. +.. ...+... ...... ....
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~-la~il~-~a~~ 655 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEE-VALILK-EATE 655 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHH-HHHHHH-HCCT
T ss_pred EEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhhccCCHHHHHHhcccHHHHHHHH-HHHHHH-hccC
Confidence 478999999999999999997642 1110 0 0001111211110 111 1111111 111000 0246
Q ss_pred cEEEEEeCCCC----CCHHH-HHHHHHHHHhcCCCcEEEEEeCCC
Q psy4285 372 YKLIILDEADA----MTNDA-QNALRRIIEKFTTNVRFCIICNYL 411 (533)
Q Consensus 372 ~~vliiDE~d~----l~~~~-~~~Ll~~le~~~~~~~~I~~~n~~ 411 (533)
++++++||..+ ++... ..++++.+.+ .+..+|++|...
T Consensus 656 p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~ 698 (765)
T 1ewq_A 656 NSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYF 698 (765)
T ss_dssp TEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCH
T ss_pred CCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence 78999999843 33333 2456777765 457788888653
No 400
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.69 E-value=0.068 Score=46.88 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+++.|++|+|||++++.+...
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 401
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.69 E-value=0.19 Score=51.67 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=22.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
.+.|.|+||+||||++..++..+..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4889999999999999999987743
No 402
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=94.68 E-value=0.063 Score=57.00 Aligned_cols=29 Identities=17% Similarity=0.407 Sum_probs=21.1
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhc
Q psy4285 370 SSYKLIILDEADAMTNDAQNALRRIIEKF 398 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~~~~~Ll~~le~~ 398 (533)
...+++||||+++++......+..+++..
T Consensus 317 ~~l~~lVlDEAH~l~~~~~~~l~~Il~~l 345 (666)
T 3o8b_A 317 GAYDIIICDECHSTDSTTILGIGTVLDQA 345 (666)
T ss_dssp TSCSEEEETTTTCCSHHHHHHHHHHHHHT
T ss_pred CcccEEEEccchhcCccHHHHHHHHHHhh
Confidence 45789999999998877655555555543
No 403
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.68 E-value=0.014 Score=53.12 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=27.1
Q ss_pred hhcccccccCCCceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 296 ~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
.++........+.+++.|++|+||||++..++.....
T Consensus 28 ~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 28 KNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 3333333334456899999999999999999988643
No 404
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.64 E-value=0.075 Score=46.66 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+++.|++|+|||++++.+...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998754
No 405
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.59 E-value=0.02 Score=49.17 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=21.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.|.||.|+||||+++.++..+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999999987
No 406
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.56 E-value=0.037 Score=50.07 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTK 333 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~ 333 (533)
.++|.|++|+||||.++.+++.+...
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999988443
No 407
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.55 E-value=0.073 Score=47.07 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=20.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+++.|++|+|||+++.++...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 408
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.52 E-value=0.024 Score=49.49 Aligned_cols=25 Identities=40% Similarity=0.428 Sum_probs=22.1
Q ss_pred CceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l~ 331 (533)
+.+.|.|++|+||||+++.++..+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 4588999999999999999998764
No 409
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.51 E-value=0.019 Score=52.29 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.|.||+|+||||+++.++...
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999865
No 410
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.51 E-value=0.18 Score=44.27 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=20.7
Q ss_pred CCceeEeCCCCCChHHHHHHHHHH
Q psy4285 306 LPHLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 306 ~~~~ll~GppGtGKT~la~~la~~ 329 (533)
...+++.|++|+||||++..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345999999999999999999754
No 411
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.48 E-value=0.19 Score=44.00 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.2
Q ss_pred CceeEeCCCCCChHHHHHHHHHH
Q psy4285 307 PHLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~ 329 (533)
+.+++.|++|+||||++..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999998754
No 412
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.47 E-value=0.083 Score=45.42 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+++.|+||+|||++++.+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999998743
No 413
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.47 E-value=0.061 Score=46.88 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||++++.+...-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999998643
No 414
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.47 E-value=0.02 Score=51.64 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.|.||+|+||||+++.++..+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37899999999999999999875
No 415
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.47 E-value=0.024 Score=49.72 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||++++.+...-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998753
No 416
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.46 E-value=0.035 Score=48.43 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||++++.+...-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999987643
No 417
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.46 E-value=0.19 Score=51.00 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.1
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTK 333 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~ 333 (533)
+++.|+||+|||+++..+|......
T Consensus 200 iiIaG~pG~GKTtlal~ia~~~a~~ 224 (444)
T 3bgw_A 200 VLIAARPSMGKTAFALKQAKNMSDN 224 (444)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHc
Confidence 8999999999999999999877543
No 418
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.45 E-value=0.017 Score=50.27 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=18.9
Q ss_pred ceeEeCCCCCChHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACAR 328 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~ 328 (533)
.+++.|++|+|||++++.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999998864
No 419
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.45 E-value=0.02 Score=52.12 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=20.4
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
+.|.||+|+||||+.+.++...
T Consensus 19 i~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhccC
Confidence 7899999999999999999865
No 420
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.36 E-value=0.074 Score=46.44 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||+++..+...-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 38999999999999999998653
No 421
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=94.35 E-value=0.034 Score=62.40 Aligned_cols=41 Identities=15% Similarity=0.341 Sum_probs=24.6
Q ss_pred CCcEEEEEeCCCCCCHHH-HHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 370 SSYKLIILDEADAMTNDA-QNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~~-~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
...+++||||+|.+.... ...+.+++...+.++.+|+.|-.
T Consensus 146 ~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT 187 (997)
T 4a4z_A 146 RDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSAT 187 (997)
T ss_dssp GGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECC
T ss_pred cCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcCC
Confidence 457899999999986431 11122333334566776666543
No 422
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.34 E-value=0.026 Score=51.43 Aligned_cols=25 Identities=36% Similarity=0.377 Sum_probs=22.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
.+.|.|++|+||||+++.+++.+..
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4889999999999999999998854
No 423
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=94.33 E-value=0.048 Score=57.89 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=23.1
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhc-CCCcEEEEEe
Q psy4285 370 SSYKLIILDEADAMTNDAQNALRRIIEKF-TTNVRFCIIC 408 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~~~~~~Ll~~le~~-~~~~~~I~~~ 408 (533)
...+++||||+|.++......+..+++.. ..+..+++.|
T Consensus 276 ~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~il~S 315 (618)
T 2whx_A 276 PNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMT 315 (618)
T ss_dssp CCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred cCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEEEEE
Confidence 46789999999999765433333333221 1345555555
No 424
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.32 E-value=0.25 Score=41.75 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||+++..+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999997654
No 425
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.30 E-value=0.029 Score=51.23 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.8
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
+-|.||||+||||.++.+++.+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 426
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.27 E-value=0.025 Score=52.41 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=20.5
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
+-|.||+|+||||+++.++..+
T Consensus 28 igI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 427
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.25 E-value=0.077 Score=45.94 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=20.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||+++..+...-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999997654
No 428
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.23 E-value=0.059 Score=46.93 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||++++.+....
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 38999999999999999998653
No 429
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.21 E-value=0.057 Score=47.14 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||++++.+...-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999997653
No 430
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.21 E-value=0.066 Score=47.24 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+++.|++|+|||++++.+...
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999998744
No 431
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.21 E-value=0.037 Score=50.05 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||++++.+...-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999987653
No 432
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.21 E-value=0.058 Score=46.21 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=18.4
Q ss_pred ceeEeCCCCCChHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACA 327 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la 327 (533)
.+++.|+||+|||++++.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999986
No 433
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.21 E-value=0.12 Score=45.28 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=19.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||++++.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 38999999999999998776544
No 434
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.21 E-value=0.15 Score=48.80 Aligned_cols=79 Identities=19% Similarity=0.134 Sum_probs=57.7
Q ss_pred CCceEEEEEcCCCCcCchhhhc--cc-eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Q psy4285 5 TTNVRFCIICNYLSKITPAIQS--RC-TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDG-DMRKVLNILQ 80 (533)
Q Consensus 5 ~~~~~~il~~~~~~~i~~~i~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~~r~a~~~l~ 80 (533)
..++++|.+||.+..+.|++++ |+ ..+.|+.|+.++..++++..+.+.+.. ++..+..++..+.| +.+...++++
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~ 230 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQ 230 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHH
Confidence 4678999999999999999988 88 689999999999999998888765543 12235566666654 3445555555
Q ss_pred HHHH
Q psy4285 81 SAAT 84 (533)
Q Consensus 81 ~~~~ 84 (533)
.++.
T Consensus 231 ~a~~ 234 (301)
T 3cf0_A 231 RACK 234 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 435
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.20 E-value=0.015 Score=53.40 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=14.7
Q ss_pred ceeEeCCCCCChHHHHHHHH-HHH
Q psy4285 308 HLLFYGPPGTGKTTTILACA-RKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la-~~l 330 (533)
.+.|.||+|+||||+++.++ ..+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 37899999999999999999 754
No 436
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.19 E-value=0.03 Score=53.63 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=21.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.|+||+|+||||+++.++..+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 48899999999999999999876
No 437
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.17 E-value=0.036 Score=51.98 Aligned_cols=92 Identities=18% Similarity=0.157 Sum_probs=65.7
Q ss_pred CceEEEEEcCCCCcCchhhhc--cc-eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Q psy4285 6 TNVRFCIICNYLSKITPAIQS--RC-TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSDG-DMRKVLNILQS 81 (533)
Q Consensus 6 ~~~~~il~~~~~~~i~~~i~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~~r~a~~~l~~ 81 (533)
.++++|.+||.+..+-|++++ |+ ..+.|++|+.++..+.|+..+....+. ++..+..++..+.| +.|...++++.
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~ 228 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINE 228 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 457899999999999999998 54 679999999999999998776543322 22235667777776 45677777777
Q ss_pred HHHhC----CCCcchhhHHhh
Q psy4285 82 AATAH----ADEVNEDTIFTL 98 (533)
Q Consensus 82 ~~~~~----~~~i~~~~i~~~ 98 (533)
+.... ...|+.+.+.+.
T Consensus 229 a~~~a~~~~~~~i~~~~~~~a 249 (268)
T 2r62_A 229 AALLAGRNNQKEVRQQHLKEA 249 (268)
T ss_dssp HHHTTSSSCCCSCCHHHHHTS
T ss_pred HHHHHHHhccCCcCHHHHHHH
Confidence 76543 234777776543
No 438
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.15 E-value=0.062 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=19.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+++.|++|+|||++++.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 439
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.15 E-value=0.03 Score=50.24 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||++++.+...-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 440
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.14 E-value=0.064 Score=47.61 Aligned_cols=22 Identities=14% Similarity=0.452 Sum_probs=19.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+++.|++|+|||++++.+...
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999754
No 441
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.12 E-value=0.063 Score=58.43 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=28.1
Q ss_pred hchhhhhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHH
Q psy4285 289 ESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 289 ~~~~~~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l 330 (533)
.|..++..+..-...+...+.++.||+|+|||..+-..+...
T Consensus 372 ~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~ 413 (780)
T 1gm5_A 372 AQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDN 413 (780)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHH
Confidence 445555555444444444568999999999999886655443
No 442
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.12 E-value=0.075 Score=46.84 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=20.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||++++.+...-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999997643
No 443
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.10 E-value=0.031 Score=55.36 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=21.0
Q ss_pred eeEeCCCCCChHHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l 330 (533)
+++.||+|+|||+++..+++.+
T Consensus 5 i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEECcchhhHHHHHHHHHHHC
Confidence 7899999999999999999987
No 444
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.10 E-value=0.099 Score=57.87 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.++|+||.|+||||+.+.++..
T Consensus 664 i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999999999543
No 445
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=94.09 E-value=0.072 Score=54.08 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=17.7
Q ss_pred ceeEeCCCCCChHHHH-HHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTI-LACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la-~~la~~l 330 (533)
++++.||+|+|||..+ ..+...+
T Consensus 10 ~vlv~a~TGSGKT~~~l~~~l~~~ 33 (440)
T 1yks_A 10 TTVLDFHPGAGKTRRFLPQILAEC 33 (440)
T ss_dssp EEEECCCTTSSTTTTHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 6999999999999985 4444433
No 446
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.09 E-value=0.095 Score=52.41 Aligned_cols=91 Identities=18% Similarity=0.273 Sum_probs=66.5
Q ss_pred CceEEEEEcCCCC---cCc---hhhhccc-eeEEeCCCCHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHhcC------C
Q psy4285 6 TNVRFCIICNYLS---KIT---PAIQSRC-TRFRFGPLDSSLIMSRLDYVIEQEK--VNVTPDGKKAIIDLSD------G 70 (533)
Q Consensus 6 ~~~~~il~~~~~~---~i~---~~i~SRc-~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~------g 70 (533)
.++.+|++++.+. .+. +.+.||. ..++|+|++.+++.+++.+.+...+ ..++++.+..++..++ |
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCC
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCC
Confidence 6778888887554 233 6677774 4499999999999999987654322 3477889999999999 9
Q ss_pred CHHHHHHHHHHHHHh----CCCCcchhhHH
Q psy4285 71 DMRKVLNILQSAATA----HADEVNEDTIF 96 (533)
Q Consensus 71 ~~r~a~~~l~~~~~~----~~~~i~~~~i~ 96 (533)
++|.+++++..+... ....++.+.+.
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~ 287 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVR 287 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 999999999876432 12246655543
No 447
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.08 E-value=0.076 Score=57.46 Aligned_cols=41 Identities=10% Similarity=0.201 Sum_probs=25.8
Q ss_pred CCcEEEEEeCCCCCCH----HHHHHHHHHHHhcCCCcEEEEEeCC
Q psy4285 370 SSYKLIILDEADAMTN----DAQNALRRIIEKFTTNVRFCIICNY 410 (533)
Q Consensus 370 ~~~~vliiDE~d~l~~----~~~~~Ll~~le~~~~~~~~I~~~n~ 410 (533)
...+++||||+|.+.. .....++..+.....+.++|+.|-.
T Consensus 137 ~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSAT 181 (702)
T 2p6r_A 137 KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSAT 181 (702)
T ss_dssp GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred hhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCC
Confidence 3568999999998743 3334455545433456777776644
No 448
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.08 E-value=0.035 Score=49.05 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||++++.+...-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 449
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.08 E-value=0.024 Score=51.79 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=19.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
.++|.|++|+||||+++.+++.+..
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3889999999999999999998843
No 450
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.06 E-value=0.031 Score=50.11 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=21.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.+.|++|+||||+++.+|+.+
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999998
No 451
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.06 E-value=0.043 Score=47.01 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=19.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999754
No 452
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.05 E-value=0.17 Score=45.38 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.9
Q ss_pred CceeEeCCCCCChHHHHHHHHHHH
Q psy4285 307 PHLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~l 330 (533)
..+++.|++|+|||+++..+...-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998654
No 453
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.05 E-value=0.06 Score=48.10 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||++++.+....
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999988654
No 454
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.03 E-value=0.025 Score=53.59 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.++++||||+||||+++.++..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 379999999999999999997653
No 455
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=94.00 E-value=0.068 Score=60.05 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=17.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
++++.+|+|+|||.++...+..
T Consensus 103 ~vLV~apTGSGKTlva~lai~~ 124 (1010)
T 2xgj_A 103 SVLVSAHTSAGKTVVAEYAIAQ 124 (1010)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHH
Confidence 6999999999999987544433
No 456
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.98 E-value=0.24 Score=45.77 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.++|.|.||+||||++.++...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999998753
No 457
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=93.97 E-value=0.092 Score=54.19 Aligned_cols=101 Identities=15% Similarity=0.242 Sum_probs=56.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccccccCcceEEecCCCCCchhHHHHHHHHHHhccc---------------------
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKT--------------------- 366 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 366 (533)
+.++.-++|+|||..+-+++..+..... ...++.+.+... .....+.+..+.....
T Consensus 58 ~~ilad~~GlGKT~~ai~~i~~~~~~~~-~~~~LIv~P~~l--~~qw~~e~~~~~~~~~v~~~~g~~~~~~~~~~~ivi~ 134 (500)
T 1z63_A 58 GICLADDMGLGKTLQTIAVFSDAKKENE-LTPSLVICPLSV--LKNWEEELSKFAPHLRFAVFHEDRSKIKLEDYDIILT 134 (500)
T ss_dssp CEEECCCTTSCHHHHHHHHHHHHHHTTC-CSSEEEEECSTT--HHHHHHHHHHHCTTSCEEECSSSTTSCCGGGSSEEEE
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHHhcCC-CCCEEEEccHHH--HHHHHHHHHHHCCCceEEEEecCchhccccCCcEEEe
Confidence 5789999999999999888877653321 223444444322 1222222222211000
Q ss_pred ----------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Q psy4285 367 ----------MHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412 (533)
Q Consensus 367 ----------~~~~~~~vliiDE~d~l~~~~~~~Ll~~le~~~~~~~~I~~~n~~~ 412 (533)
.....++++|+||++.+.... ....+.+.......++.+|+....
T Consensus 135 t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~-~~~~~~l~~l~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 135 TYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQ-TKIFKAVKELKSKYRIALTGTPIE 189 (500)
T ss_dssp EHHHHTTCHHHHTCCEEEEEEETGGGGSCTT-SHHHHHHHTSCEEEEEEECSSCST
T ss_pred eHHHHhccchhcCCCcCEEEEeCccccCCHh-HHHHHHHHhhccCcEEEEecCCCC
Confidence 002357899999999984321 223444444444556777766543
No 458
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.96 E-value=0.1 Score=57.62 Aligned_cols=100 Identities=20% Similarity=0.271 Sum_probs=51.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHcccc-----c--------cCcceEEecCCCC--Cch----hHHHHHHHHHHhcccCC
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTKA-----Q--------FNAMVLELNASDD--RGI----GIVRDQIFQFASTKTMH 368 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~~-----~--------~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~ 368 (533)
.++|+||.|+||||+.+.++....... + ....+..+...+. .+. ..+.+...... .
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~-~---- 749 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIR-K---- 749 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHH-H----
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHH-h----
Confidence 379999999999999999875432110 0 0001111121111 111 11122111111 1
Q ss_pred CCCcEEEEEeCCCC-CCHHHHHHHH-HHHHhc--CCCcEEEEEeCCCC
Q psy4285 369 KSSYKLIILDEADA-MTNDAQNALR-RIIEKF--TTNVRFCIICNYLS 412 (533)
Q Consensus 369 ~~~~~vliiDE~d~-l~~~~~~~Ll-~~le~~--~~~~~~I~~~n~~~ 412 (533)
...+.++++||... +++.....+. .+++.. ..++.+|++|...+
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e 797 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP 797 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH
Confidence 14578999999864 5555454444 344332 24678888887654
No 459
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.93 E-value=0.15 Score=44.61 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=20.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||++++.+...-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 460
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.92 E-value=0.038 Score=53.02 Aligned_cols=24 Identities=42% Similarity=0.458 Sum_probs=21.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.+.+.||+|+||||+++.++..+.
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 461
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=93.90 E-value=0.14 Score=47.33 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.6
Q ss_pred ceeEeCCCCCChHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILAC 326 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~l 326 (533)
++++.+|+|+|||..+-..
T Consensus 62 ~~l~~a~TGsGKT~~~~~~ 80 (253)
T 1wrb_A 62 DIMACAQTGSGKTAAFLIP 80 (253)
T ss_dssp CEEEECCTTSSHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHHH
Confidence 6999999999999865443
No 462
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.84 E-value=0.028 Score=48.48 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.++|.|++|+||||+|..+.+.
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 4899999999999999999874
No 463
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.84 E-value=0.49 Score=47.64 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=22.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTK 333 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~ 333 (533)
.+++.|++|+||||++..+|..+...
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 37888999999999999999888544
No 464
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.82 E-value=0.055 Score=47.98 Aligned_cols=43 Identities=14% Similarity=0.275 Sum_probs=27.2
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCcEEEEEeCCCCCC
Q psy4285 371 SYKLIILDEADAMTNDAQNALRRIIEK---FTTNVRFCIICNYLSKI 414 (533)
Q Consensus 371 ~~~vliiDE~d~l~~~~~~~Ll~~le~---~~~~~~~I~~~n~~~~l 414 (533)
..-++++|=-+. ..+....+..++.+ ...+..+++++|..+.+
T Consensus 97 ~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 97 GALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp SEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred CEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence 445777776555 44454555555554 34578899999987744
No 465
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.81 E-value=0.05 Score=47.99 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||++++.+...-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998653
No 466
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.80 E-value=0.078 Score=46.66 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.3
Q ss_pred eeEeCCCCCChHHHHHHHHHH
Q psy4285 309 LLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~ 329 (533)
+++.|++|+|||++++.+...
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999999764
No 467
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.80 E-value=0.029 Score=53.64 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=22.0
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHcc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYT 332 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~ 332 (533)
.+++.||||+||||+++.++..+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999987643
No 468
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.80 E-value=0.043 Score=49.51 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+++.|++|+|||+++..+...
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999753
No 469
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.78 E-value=0.037 Score=58.01 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=21.7
Q ss_pred eeEeCCCCCChHHHHHHHHHHHc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~ 331 (533)
++|+|+||+||||+|+.+++.+.
T Consensus 399 I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 399 IFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEeecCCCCCHHHHHHHHHHHhc
Confidence 79999999999999999999884
No 470
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.78 E-value=0.019 Score=54.86 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=18.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.+.++||+|+||||+++.+++.+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999998763
No 471
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.77 E-value=0.17 Score=43.28 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+++.|++|+|||+++..+...
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999754
No 472
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.77 E-value=0.035 Score=53.46 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=21.0
Q ss_pred eeEeCCCCCChHHHHHHHHHHHc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~ 331 (533)
+.|.||+|+||||+++.++..+.
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHhhcc
Confidence 78999999999999999998763
No 473
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.75 E-value=0.13 Score=47.19 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++|.|++|+||||++.++...-
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 48999999999999999998643
No 474
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=93.73 E-value=0.16 Score=51.76 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=17.8
Q ss_pred ceeEeCCCCCChHHH-HHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTT-ILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~l-a~~la~~l 330 (533)
++++.||+|+|||+. ...+...+
T Consensus 23 ~vlv~a~TGsGKT~~~~l~il~~~ 46 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKILPQIIKDA 46 (459)
T ss_dssp EEEECCCTTSCTTTTHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999997 44554443
No 475
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.73 E-value=0.31 Score=45.08 Aligned_cols=90 Identities=13% Similarity=0.072 Sum_probs=65.4
Q ss_pred CceEEEEEcCCCCcCchhhhccc---eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHHH-HHHHHHhcCCCH-HHHHHHHH
Q psy4285 6 TNVRFCIICNYLSKITPAIQSRC---TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG-KKAIIDLSDGDM-RKVLNILQ 80 (533)
Q Consensus 6 ~~~~~il~~~~~~~i~~~i~SRc---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~g~~-r~a~~~l~ 80 (533)
..+.++.++|.+..+-|++++|+ ..+.|+.|+.++..++|+..+.. ..++++. +..++..+.|+. |...++++
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~G~~~~dl~~~~~ 230 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLN 230 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC--CCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 34567778899999999999954 56899999999999988866543 3444433 778999999866 77777777
Q ss_pred HHHHh---C-CCCcchhhHHh
Q psy4285 81 SAATA---H-ADEVNEDTIFT 97 (533)
Q Consensus 81 ~~~~~---~-~~~i~~~~i~~ 97 (533)
.++.. . ...|+.+.+.+
T Consensus 231 ~a~~~a~~~~~~~I~~~dl~~ 251 (254)
T 1ixz_A 231 EAALLAAREGRRKITMKDLEE 251 (254)
T ss_dssp HHHHHHHHTTCSSBCHHHHHH
T ss_pred HHHHHHHHhcCCCcCHHHHHH
Confidence 66542 2 23477777654
No 476
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.71 E-value=0.038 Score=53.06 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.7
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.++++||+|+||||++..+|..+.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHHH
Confidence 378999999999999999998874
No 477
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.69 E-value=0.078 Score=46.60 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||++++.+...-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998653
No 478
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.66 E-value=0.055 Score=47.15 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=9.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+++.|++|+|||+++..+...
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998754
No 479
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.64 E-value=0.021 Score=49.88 Aligned_cols=107 Identities=10% Similarity=0.116 Sum_probs=57.9
Q ss_pred hhccccchhHHHHHhchHHHHhhcCCChhhHHHHH--hhccCccccccCCCChhhHHHHHHHHHhccc-----ccceeee
Q psy4285 101 SRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLV--LKMSDIEYRLAAGTSEKIQLSALIAAFNSAR-----DKLEVLE 173 (533)
Q Consensus 101 ~~~ek~~~~~l~~lls~~~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~-----~~~~~~e 173 (533)
+|.+++++..+.++++..+.+..+. ..+ .....+...|++|+|||+.+.+++..+.... ....++.
T Consensus 11 ~l~~~~~~~~~~~~~g~~~~~~~l~-------~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 11 DLTALARAGKLDPVIGRDTEIRRAI-------QILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHH-------HHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred HHHHHHhccccchhhcchHHHHHHH-------HHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 4556666666666666554443321 000 1123456889999999999998888764321 1356666
Q ss_pred ecCCcccc----hhhhHHHHhhhhhcccccCCCceEEEEcCccccC
Q psy4285 174 LNASDDRG----IGIVRDQIFQFASTKTMHKSSYKLIILDEADAMT 215 (533)
Q Consensus 174 ~nasd~~g----~~~~~d~i~~~a~~~~l~~~~~~~iilDE~d~l~ 215 (533)
+++++... .+...+.+........ ..+.+.++++||++.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vl~iDe~~~l~ 128 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQ-DAEGQVVMFIDEIHTVV 128 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHH-HTTTSEEEEETTGGGGS
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHH-hcCCceEEEEeCHHHhc
Confidence 66544211 1111112211111111 11345699999999886
No 480
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.63 E-value=0.097 Score=46.82 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=19.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+++.|++|+|||+++..+...
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998854
No 481
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.63 E-value=0.35 Score=45.49 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=65.4
Q ss_pred CceEEEEEcCCCCcCchhhhccc---eeEEeCCCCHHHHHHHHHHHHhhcCCCCCHH-HHHHHHHhcCCCH-HHHHHHHH
Q psy4285 6 TNVRFCIICNYLSKITPAIQSRC---TRFRFGPLDSSLIMSRLDYVIEQEKVNVTPD-GKKAIIDLSDGDM-RKVLNILQ 80 (533)
Q Consensus 6 ~~~~~il~~~~~~~i~~~i~SRc---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~g~~-r~a~~~l~ 80 (533)
..+.++.++|.+..+-|++++|+ ..+.|++|+.++..++|+..+.. ..++++ .+..++..+.|+. |...++++
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~G~~~~dl~~l~~ 254 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLN 254 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc--CCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 34667778899999999999854 56899999999999988866543 444443 3778999999977 66667777
Q ss_pred HHHHh---C-CCCcchhhHHh
Q psy4285 81 SAATA---H-ADEVNEDTIFT 97 (533)
Q Consensus 81 ~~~~~---~-~~~i~~~~i~~ 97 (533)
.+... . ...|+.+.+.+
T Consensus 255 ~a~~~a~~~~~~~I~~~dl~~ 275 (278)
T 1iy2_A 255 EAALLAAREGRRKITMKDLEE 275 (278)
T ss_dssp HHHHHHHHTTCCSBCHHHHHH
T ss_pred HHHHHHHHhCCCCcCHHHHHH
Confidence 66542 1 23577777654
No 482
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.60 E-value=0.037 Score=57.39 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=21.3
Q ss_pred eeEeCCCCCChHHHHHHHHHHHc
Q psy4285 309 LLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~ 331 (533)
+++.|.||+||||+++.+++.+.
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 78999999999999999999873
No 483
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=93.59 E-value=0.17 Score=51.53 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=16.2
Q ss_pred ceeEeCCCCCChHHH-HHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTT-ILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~l-a~~la~~ 329 (533)
.+++.||+|+|||+. +-.+...
T Consensus 21 ~~lv~a~TGsGKT~~~~~~~l~~ 43 (451)
T 2jlq_A 21 LTIMDLHPGAGKTKRILPSIVRE 43 (451)
T ss_dssp EEEECCCTTSSCCTTHHHHHHHH
T ss_pred eEEEECCCCCCHhhHHHHHHHHH
Confidence 469999999999993 4444433
No 484
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.58 E-value=0.035 Score=51.08 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.8
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTK 333 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~ 333 (533)
.++|.|++|+||||+++.+++.+...
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999999999988443
No 485
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.56 E-value=0.072 Score=47.53 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||+++..+...-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999997643
No 486
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.55 E-value=0.37 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.++++||.|+||||+.+.++...
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 48999999999999999998764
No 487
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.54 E-value=0.077 Score=47.22 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=4.3
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+++.|++|+|||+++..+...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998765
No 488
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.53 E-value=0.12 Score=51.98 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=59.7
Q ss_pred CCceEEEEEc----CCCCcCchhhhcccee-EEeCCCCHHHHHHHHHH-----------HHhhcC--CCCCHHHHHHHHH
Q psy4285 5 TTNVRFCIIC----NYLSKITPAIQSRCTR-FRFGPLDSSLIMSRLDY-----------VIEQEK--VNVTPDGKKAIID 66 (533)
Q Consensus 5 ~~~~~~il~~----~~~~~i~~~i~SRc~~-~~~~~~~~~~~~~~l~~-----------~~~~~~--~~~~~~~~~~~~~ 66 (533)
..++.||.++ +.++.++|.+++|+-+ +.|++++.+++.+++.. ....++ +.++++++..|++
T Consensus 300 ~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~ 379 (444)
T 1g41_A 300 TDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAE 379 (444)
T ss_dssp CTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred CCcEEEEeccccccCChhhcchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHH
Confidence 4567788886 2445578999999865 89999999999999831 111234 4578999999988
Q ss_pred h--------cCCCHHHHHHHHHHHHH
Q psy4285 67 L--------SDGDMRKVLNILQSAAT 84 (533)
Q Consensus 67 ~--------~~g~~r~a~~~l~~~~~ 84 (533)
. -++.+|...+.++.+..
T Consensus 380 ~a~~~~~~t~~~GaR~L~~~ie~~~~ 405 (444)
T 1g41_A 380 AAFRVNEKTENIGARRLHTVMERLMD 405 (444)
T ss_dssp HHHHHHHHSCCCGGGHHHHHHHHHHH
T ss_pred HHHHhccCCccCCchHHHHHHHHHHH
Confidence 6 35778998888887643
No 489
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.51 E-value=0.032 Score=51.54 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=21.4
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.|.|++|+||||+++.+++.+
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 37899999999999999999987
No 490
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=93.44 E-value=0.51 Score=48.15 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=18.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+.+.|+||+||||+..++...
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998765
No 491
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.34 E-value=0.097 Score=47.10 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+++.|++|+|||++++.+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999988753
No 492
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.34 E-value=0.029 Score=58.01 Aligned_cols=35 Identities=23% Similarity=0.164 Sum_probs=26.1
Q ss_pred hhhhcccccccCCCceeEeCCCCCChHHHHHHHHHHH
Q psy4285 294 CYKINRFIDENELPHLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 294 ~~~l~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l 330 (533)
...+.-.+..+. ++++.||+|+||||+.++++..+
T Consensus 250 l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 250 LAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence 344444444443 58999999999999999998765
No 493
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.34 E-value=0.1 Score=45.96 Aligned_cols=22 Identities=23% Similarity=0.610 Sum_probs=19.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~ 329 (533)
.+++.|++|+|||+++..+...
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999864
No 494
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.33 E-value=0.041 Score=49.82 Aligned_cols=24 Identities=38% Similarity=0.317 Sum_probs=22.1
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.++|.|++|+||||.++.+++.+.
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 489999999999999999999983
No 495
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.28 E-value=0.35 Score=47.44 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.2
Q ss_pred CceeEeCCCCCChHHHHHHHHHH
Q psy4285 307 PHLLFYGPPGTGKTTTILACARK 329 (533)
Q Consensus 307 ~~~ll~GppGtGKT~la~~la~~ 329 (533)
..+++.|+||+||||+...++..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998764
No 496
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.26 E-value=0.052 Score=49.46 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=21.5
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+.+.|++|||||++++.+|+.+
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHc
Confidence 37899999999999999999998
No 497
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.26 E-value=0.073 Score=55.36 Aligned_cols=100 Identities=15% Similarity=0.160 Sum_probs=0.0
Q ss_pred eeEeCCCCCChHHHHHHHHHHHccccccCcc-------------------------------------------------
Q psy4285 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAM------------------------------------------------- 339 (533)
Q Consensus 309 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~------------------------------------------------- 339 (533)
+-|.||.|+||||+.+.++..+.... +..
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl~~p~~--G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGEIIPNF--GDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGT 105 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCCT--TCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCCSB
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCC--CccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhccCc
Q ss_pred -------------------eEEecCCCCCchhHHHHHHHHHHhcccCCCCCcEEEEEeC-CCCCCHHHHHHHHHHHHhcC
Q psy4285 340 -------------------VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDE-ADAMTNDAQNALRRIIEKFT 399 (533)
Q Consensus 340 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE-~d~l~~~~~~~Ll~~le~~~ 399 (533)
.+.+.....+....+..-.++-..........+++|++|| ...|+...+..+++++.+..
T Consensus 106 v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~ 185 (538)
T 3ozx_A 106 VNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL 185 (538)
T ss_dssp HHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh
Q ss_pred CCcEEEEEeCC
Q psy4285 400 TNVRFCIICNY 410 (533)
Q Consensus 400 ~~~~~I~~~n~ 410 (533)
.+..+|+++..
T Consensus 186 ~g~tii~vsHd 196 (538)
T 3ozx_A 186 KNKYVIVVDHD 196 (538)
T ss_dssp TTSEEEEECSC
T ss_pred CCCEEEEEEeC
No 498
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.25 E-value=0.049 Score=52.19 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.6
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLY 331 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~ 331 (533)
.+.|.||+|+||||+++.++..+.
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998764
No 499
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.25 E-value=0.062 Score=47.84 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.2
Q ss_pred ceeEeCCCCCChHHHHHHHHHHH
Q psy4285 308 HLLFYGPPGTGKTTTILACARKL 330 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l 330 (533)
.+++.|++|+|||+++..+...-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998643
No 500
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.19 E-value=0.045 Score=49.48 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=22.9
Q ss_pred ceeEeCCCCCChHHHHHHHHHHHccc
Q psy4285 308 HLLFYGPPGTGKTTTILACARKLYTK 333 (533)
Q Consensus 308 ~~ll~GppGtGKT~la~~la~~l~~~ 333 (533)
.+.|.|++|+||||.++.+++.+...
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999988544
Done!