Your job contains 1 sequence.
>psy4285
IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG
KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDI
ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDR
GIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRKLPVTPDGKKAIIDLS
DGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYKINRF
IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ
FASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQS
RCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHR
LEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEAPPDPQ
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4285
(533 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-040907-1 - symbol:rfc5 "replication factor ... 565 2.9e-74 2
UNIPROTKB|P40937 - symbol:RFC5 "Replication factor C subu... 557 5.3e-73 2
MGI|MGI:1919401 - symbol:Rfc5 "replication factor C (acti... 554 6.7e-73 2
UNIPROTKB|F1RKG3 - symbol:RFC5 "Uncharacterized protein" ... 554 1.1e-72 2
UNIPROTKB|E2RCF4 - symbol:RFC5 "Uncharacterized protein" ... 554 1.4e-72 2
RGD|1309280 - symbol:Rfc5 "replication factor C (activato... 553 1.4e-72 2
FB|FBgn0032244 - symbol:RfC3 "Replication factor C subuni... 571 3.3e-69 2
UNIPROTKB|J9NUF8 - symbol:RFC5 "Uncharacterized protein" ... 554 5.4e-59 2
UNIPROTKB|Q32PI3 - symbol:RFC5 "Uncharacterized protein" ... 554 1.1e-58 2
WB|WBGene00018409 - symbol:F44B9.8 species:6239 "Caenorha... 507 9.9e-58 2
POMBASE|SPAC27E2.10c - symbol:rfc3 "DNA replication facto... 496 1.6e-57 2
TAIR|locus:2204710 - symbol:RFC3 "replication factor C su... 462 3.3e-57 2
UNIPROTKB|F8W9B4 - symbol:RFC5 "Replication factor C subu... 395 6.1e-56 2
DICTYBASE|DDB_G0282235 - symbol:rfc5 "replication factor ... 465 2.0e-55 2
SGD|S000005234 - symbol:RFC3 "Subunit of heteropentameric... 479 1.3e-53 2
ASPGD|ASPL0000017750 - symbol:AN8064 species:162425 "Emer... 459 8.7e-53 2
CGD|CAL0003213 - symbol:RCF3 species:5476 "Candida albica... 454 3.3e-51 2
GENEDB_PFALCIPARUM|PF14_0601 - symbol:PF14_0601 "replicat... 442 5.3e-49 2
UNIPROTKB|Q8IKK4 - symbol:PF14_0601 "Replication factor C... 442 5.3e-49 2
ASPGD|ASPL0000039105 - symbol:AN2969 species:162425 "Emer... 387 1.2e-39 2
POMBASE|SPAC23D3.02 - symbol:rfc2 "DNA replication factor... 382 3.2e-39 2
ZFIN|ZDB-GENE-040824-3 - symbol:rfc4 "replication factor ... 364 1.2e-37 2
DICTYBASE|DDB_G0286027 - symbol:rfc4 "replication factor ... 376 2.4e-37 2
UNIPROTKB|P35249 - symbol:RFC4 "Replication factor C subu... 366 3.1e-37 2
UNIPROTKB|C9JZI1 - symbol:RFC4 "Replication factor C subu... 366 3.1e-37 2
UNIPROTKB|F1NEW1 - symbol:RFC4 "Uncharacterized protein" ... 363 4.0e-37 2
UNIPROTKB|F1NIY0 - symbol:RFC4 "Uncharacterized protein" ... 363 4.0e-37 2
MGI|MGI:2146571 - symbol:Rfc4 "replication factor C (acti... 366 6.4e-37 2
RGD|1310142 - symbol:Rfc4 "replication factor C (activato... 366 8.2e-37 2
TAIR|locus:2015233 - symbol:RFC2 "replication factor C 2"... 328 8.9e-35 2
FB|FBgn0030871 - symbol:CG8142 species:7227 "Drosophila m... 352 1.2e-34 2
UNIPROTKB|F1SFI3 - symbol:RFC4 "Uncharacterized protein" ... 371 3.6e-34 1
UNIPROTKB|E2R2M6 - symbol:RFC4 "Uncharacterized protein" ... 369 5.8e-34 1
UNIPROTKB|Q29RS9 - symbol:RFC4 "Uncharacterized protein" ... 367 9.5e-34 1
GENEDB_PFALCIPARUM|PFB0840w - symbol:PFB0840w "replicatio... 330 1.2e-33 2
UNIPROTKB|O96260 - symbol:PFB0840w "Replication factor C,... 330 1.2e-33 2
UNIPROTKB|C9J8M3 - symbol:RFC4 "Replication factor C subu... 366 1.2e-33 1
CGD|CAL0002015 - symbol:RFC2 species:5476 "Candida albica... 365 1.5e-33 1
SGD|S000003829 - symbol:RFC2 "Subunit of heteropentameric... 364 2.0e-33 1
UNIPROTKB|P53033 - symbol:RFC2 "Replication factor C subu... 329 3.2e-33 2
WB|WBGene00004340 - symbol:rfc-4 species:6239 "Caenorhabd... 359 6.7e-33 1
UNIPROTKB|P53016 - symbol:rfc-4 "Replication factor C sub... 359 6.7e-33 1
UNIPROTKB|P35250 - symbol:RFC2 "Replication factor C subu... 327 3.0e-32 2
UNIPROTKB|F6ULR2 - symbol:RFC2 "Uncharacterized protein" ... 327 3.0e-32 2
UNIPROTKB|Q05B83 - symbol:RFC2 "Replication factor C subu... 324 6.9e-32 2
UNIPROTKB|I3LHX6 - symbol:RFC2 "Uncharacterized protein" ... 322 7.4e-32 2
RGD|621198 - symbol:Rfc2 "replication factor C (activator... 328 7.7e-32 2
FB|FBgn0260985 - symbol:RfC4 "Replication factor C subuni... 306 9.4e-32 2
ZFIN|ZDB-GENE-050306-29 - symbol:rfc2 "replication factor... 326 1.7e-31 2
MGI|MGI:1341868 - symbol:Rfc2 "replication factor C (acti... 325 1.8e-31 2
WB|WBGene00004338 - symbol:rfc-2 species:6239 "Caenorhabd... 305 1.1e-30 2
DICTYBASE|DDB_G0291868 - symbol:rfc2 "replication factor ... 311 4.9e-30 2
POMBASE|SPAC1687.03c - symbol:rfc4 "DNA replication facto... 294 2.0e-29 2
UNIPROTKB|E2QSU1 - symbol:RFC2 "Uncharacterized protein" ... 327 3.7e-29 1
SGD|S000005454 - symbol:RFC4 "Subunit of heteropentameric... 293 5.3e-29 2
CGD|CAL0000922 - symbol:RFC4 species:5476 "Candida albica... 298 2.6e-28 2
RGD|1593197 - symbol:LOC367042 "similar to Activator 1 37... 312 1.8e-27 1
GENEDB_PFALCIPARUM|PFL2005w - symbol:PFL2005w "replicatio... 296 1.1e-25 1
UNIPROTKB|Q8I512 - symbol:PFL2005w "Replication factor C ... 296 1.1e-25 1
UNIPROTKB|C9JTT7 - symbol:RFC4 "Replication factor C subu... 249 1.6e-20 1
TAIR|locus:2180315 - symbol:EMB2775 "EMBRYO DEFECTIVE 277... 150 3.9e-15 2
UNIPROTKB|C9JXZ7 - symbol:RFC4 "Replication factor C subu... 187 8.9e-14 1
RGD|1306832 - symbol:Rfc3 "replication factor C (activato... 152 1.7e-13 3
MGI|MGI:1916513 - symbol:Rfc3 "replication factor C (acti... 151 2.3e-13 3
UNIPROTKB|F1P3C0 - symbol:RFC3 "Uncharacterized protein" ... 145 3.2e-13 4
UNIPROTKB|Q2TBV1 - symbol:RFC3 "Replication factor C subu... 151 3.6e-13 3
FB|FBgn0028700 - symbol:RfC38 "Replication factor C 38kD ... 153 4.1e-13 3
DICTYBASE|DDB_G0293702 - symbol:rfc3 "replication factor ... 125 6.5e-13 4
WB|WBGene00004339 - symbol:rfc-3 species:6239 "Caenorhabd... 144 7.2e-13 3
UNIPROTKB|Q18547 - symbol:rfc-3 "Protein RFC-3" species:6... 144 7.2e-13 3
UNIPROTKB|F1RSR4 - symbol:RFC3 "Uncharacterized protein" ... 148 8.2e-13 3
UNIPROTKB|H7C5P4 - symbol:RFC2 "Replication factor C subu... 178 8.4e-13 1
CGD|CAL0004366 - symbol:RFC5 species:5476 "Candida albica... 145 1.0e-12 3
UNIPROTKB|E2R7L0 - symbol:RFC3 "Uncharacterized protein" ... 148 1.3e-12 3
UNIPROTKB|P40938 - symbol:RFC3 "Replication factor C subu... 148 1.3e-12 3
ZFIN|ZDB-GENE-020809-3 - symbol:rfc3 "replication factor ... 143 3.2e-12 3
SGD|S000000291 - symbol:RFC5 "Subunit of heteropentameric... 147 1.8e-11 2
ASPGD|ASPL0000001589 - symbol:AN6300 species:162425 "Emer... 130 2.8e-11 4
GENEDB_PFALCIPARUM|PF11_0117 - symbol:PF11_0117 "replicat... 96 4.2e-08 3
UNIPROTKB|Q8IIQ1 - symbol:PF11_0117 "Replication factor C... 96 4.2e-08 3
UNIPROTKB|E7DN81 - symbol:E7DN81 "DnaX DNA polymerase III... 150 1.2e-07 1
POMBASE|SPBC83.14c - symbol:rfc5 "DNA replication factor ... 148 3.1e-07 2
TIGR_CMR|CHY_2675 - symbol:CHY_2675 "putative DNA polymer... 149 3.5e-07 1
UNIPROTKB|G4NAB7 - symbol:MGG_03202 "Replication factor C... 125 9.3e-07 3
UNIPROTKB|Q2GG32 - symbol:ECH_0803 "Putative uncharacteri... 140 1.1e-06 1
TIGR_CMR|ECH_0803 - symbol:ECH_0803 "conserved hypothetic... 140 1.1e-06 1
UNIPROTKB|Q2GDS0 - symbol:NSE_0492 "Putative DNA polymera... 140 2.2e-06 1
TIGR_CMR|NSE_0492 - symbol:NSE_0492 "putative DNA polymer... 140 2.2e-06 1
TAIR|locus:2172013 - symbol:AT5G45720 species:3702 "Arabi... 144 3.0e-06 1
UNIPROTKB|Q97RF7 - symbol:dnaX "DNA polymerase III, gamma... 136 1.0e-05 1
TIGR_CMR|DET_0585 - symbol:DET_0585 "DNA polymerase III, ... 136 1.1e-05 1
UNIPROTKB|O83970 - symbol:TP_1005 "DNA polymerase III, su... 136 1.1e-05 1
TIGR_CMR|BA_0019 - symbol:BA_0019 "DNA polymerase III, ga... 132 3.0e-05 1
TIGR_CMR|SPO_3550 - symbol:SPO_3550 "DNA polymerase III, ... 131 3.0e-05 2
TIGR_CMR|CJE_1293 - symbol:CJE_1293 "DNA polymerase III, ... 126 0.00012 1
TIGR_CMR|GSU_0094 - symbol:GSU_0094 "DNA polymerase III, ... 126 0.00014 1
UNIPROTKB|Q0C591 - symbol:dnaX "DNA polymerase III, subun... 123 0.00018 3
TIGR_CMR|ECH_0014 - symbol:ECH_0014 "DNA polymerase III, ... 121 0.00040 1
UNIPROTKB|P09122 - symbol:dnaX "DNA polymerase III subuni... 120 0.00060 1
>ZFIN|ZDB-GENE-040907-1 [details] [associations]
symbol:rfc5 "replication factor C (activator 1) 5"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0060041 "retina development in camera-type eye" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-040907-1 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0060041 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
HOVERGEN:HBG002053 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:CU207223 EMBL:AY648755 IPI:IPI00505315
RefSeq:NP_001003862.1 UniGene:Dr.151058 SMR:Q6DRK4 STRING:Q6DRK4
Ensembl:ENSDART00000051670 GeneID:445385 KEGG:dre:445385
InParanoid:Q6DRK4 NextBio:20832089 Uniprot:Q6DRK4
Length = 334
Score = 565 (203.9 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 105/150 (70%), Positives = 125/150 (83%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLLFYGPPGTGKT+TILACAR+LY +FN+MVLELNASDDRGI
Sbjct: 33 DILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYKDKEFNSMVLELNASDDRGI 92
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+VR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 93 DVVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 152
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL + ++ RL++
Sbjct: 153 SKIIPALQSRCTRFRFGPLSQNQMIPRLEH 182
Score = 330 (121.2 bits), Expect = 6.9e-49, Sum P(2) = 6.9e-49
Identities = 61/97 (62%), Positives = 79/97 (81%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL + ++ RL++VI+QE +++TPDG
Sbjct: 136 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQESIDITPDG 195
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT 97
KAI+ LS GDMR+ LNILQS A+ +V E+T++T
Sbjct: 196 MKAIVTLSTGDMRRSLNILQSTHMAYG-KVTEETVYT 231
Score = 276 (102.2 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 70/156 (44%), Positives = 91/156 (58%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD+L+SHQDI+STI+ I E L L+ G + I L+
Sbjct: 17 VEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPP-----GTGKTSTI-LACARQ 70
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ VLELNASDDRGI +VR I FAST+T+ K +KL+ILDEADAMT DAQN
Sbjct: 71 LYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQN 130
Query: 221 ALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAAT 256
ALRR + + + + + + K++ LQS T
Sbjct: 131 ALRRVIEKFTENTRFCLICNY--LSKIIPALQSRCT 164
Score = 203 (76.5 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 38/61 (62%), Positives = 53/61 (86%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
GLAL DILTE+ LL+HR++ P S+ + L++K++DIEYRLA+GTSEKIQLS+++AAF + R
Sbjct: 268 GLALHDILTEVHLLIHRVDFPPSIRMGLLIKLADIEYRLASGTSEKIQLSSMVAAFQAVR 327
Query: 524 D 524
D
Sbjct: 328 D 328
Score = 183 (69.5 bits), Expect = 6.8e-29, Sum P(2) = 6.8e-29
Identities = 38/90 (42%), Positives = 55/90 (61%)
Query: 223 RRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNI 282
+ + +TPDG KAI+ LS GDMR+ LNILQS A+ +V E+TVY G+P +++I NI
Sbjct: 186 QESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYG-KVTEETVYTCTGHPLRSDIANI 244
Query: 283 LRWLLNESMDLCYKINRFIDENELPHLLFY 312
L W LN+ Y N+ ++ L L +
Sbjct: 245 LDWALNKDFTTAY--NQILELKTLKGLALH 272
Score = 143 (55.4 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 26/48 (54%), Positives = 40/48 (83%)
Query: 120 IISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 167
+I ++ P S+ + L++K++DIEYRLA+GTSEKIQLS+++AAF + RD
Sbjct: 281 LIHRVDFPPSIRMGLLIKLADIEYRLASGTSEKIQLSSMVAAFQAVRD 328
>UNIPROTKB|P40937 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019899 "enzyme binding" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006281 "DNA repair"
evidence=NAS;TAS] [GO:0005663 "DNA replication factor C complex"
evidence=IDA] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
Reactome:REACT_216 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677
GO:GO:0019899 KO:K10756 GO:GO:0017111 GO:GO:0000084 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
OMA:ILACARQ EMBL:L07540 EMBL:AY254323 EMBL:AK094575 EMBL:AC131159
EMBL:BC001866 EMBL:BC013961 IPI:IPI00031514 IPI:IPI00925306
RefSeq:NP_001123584.1 RefSeq:NP_031396.1 RefSeq:NP_853556.2
UniGene:Hs.731908 PDB:1LFS PDBsum:1LFS ProteinModelPortal:P40937
SMR:P40937 DIP:DIP-36433N IntAct:P40937 MINT:MINT-1372754
STRING:P40937 PhosphoSite:P40937 DMDM:728777 PaxDb:P40937
PRIDE:P40937 DNASU:5985 Ensembl:ENST00000392542
Ensembl:ENST00000454402 GeneID:5985 KEGG:hsa:5985 UCSC:uc001twq.3
CTD:5985 GeneCards:GC12P118454 HGNC:HGNC:9973 HPA:HPA041037
MIM:600407 neXtProt:NX_P40937 PharmGKB:PA34342 InParanoid:P40937
PhylomeDB:P40937 GenomeRNAi:5985 NextBio:23303 ArrayExpress:P40937
Bgee:P40937 CleanEx:HS_RFC5 Genevestigator:P40937
GermOnline:ENSG00000111445 Uniprot:P40937
Length = 340
Score = 557 (201.1 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 111/178 (62%), Positives = 136/178 (76%)
Query: 274 PTKTEITNILRWL-------LNESM---DLCYKINRFIDENELPHLLFYGPPGTGKTTTI 323
P T+I N L W+ LN+ + D+ I +FI+E+ LPHLL YGPPGTGKT+TI
Sbjct: 12 PAATKIRN-LPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTI 70
Query: 324 LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAM 383
LACA++LY +F +MVLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAM
Sbjct: 71 LACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAM 130
Query: 384 TNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T DAQNALRR+IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 131 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Score = 324 (119.1 bits), Expect = 9.7e-48, Sum P(2) = 9.7e-48
Identities = 60/97 (61%), Positives = 78/97 (80%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 142 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT 97
KA++ LS GDMR+ LNILQS A +V E+T++T
Sbjct: 202 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYT 237
Score = 274 (101.5 bits), Expect = 6.0e-42, Sum P(2) = 6.0e-42
Identities = 74/159 (46%), Positives = 96/159 (60%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L Y GT + + L
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLL------YG-PPGTGKTSTI--LAC 73
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 74 AKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQD 133
Query: 218 AQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAAT 256
AQNALRR + + + + + + K++ LQS T
Sbjct: 134 AQNALRRVIEKFTENTRFCLICNY--LSKIIPALQSRCT 170
Score = 199 (75.1 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 41/65 (63%), Positives = 51/65 (78%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
GLAL DILTEI L VHR++ P S+ + L+ KM+DIEYRL+ GT+EKIQLS+LIAAF R
Sbjct: 274 GLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTR 333
Query: 524 DKLEA 528
D + A
Sbjct: 334 DLIVA 338
Score = 179 (68.1 bits), Expect = 7.1e-28, Sum P(2) = 7.1e-28
Identities = 34/72 (47%), Positives = 48/72 (66%)
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
K+ ++ DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 194 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 252
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 253 WMLNQDFTTAYR 264
Score = 138 (53.6 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 90 VNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEI-------PESMLVDLVLKMSDIE 142
+N+D FT + + + TL L H DI++ I + P S+ + L+ KM+DIE
Sbjct: 255 LNQD--FTTAYRNITELK--TLKGLALH-DILTEIHLFVHRVDFPSSVRIHLLTKMADIE 309
Query: 143 YRLAAGTSEKIQLSALIAAFNSARD 167
YRL+ GT+EKIQLS+LIAAF RD
Sbjct: 310 YRLSVGTNEKIQLSSLIAAFQVTRD 334
>MGI|MGI:1919401 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1919401
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 GO:GO:0005663
HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
GeneTree:ENSGT00550000075072 OMA:ILACARQ CTD:5985 EMBL:AK011489
IPI:IPI00132481 RefSeq:NP_082404.1 UniGene:Mm.27997
ProteinModelPortal:Q9D0F6 SMR:Q9D0F6 STRING:Q9D0F6
PhosphoSite:Q9D0F6 PaxDb:Q9D0F6 PRIDE:Q9D0F6
Ensembl:ENSMUST00000086461 GeneID:72151 KEGG:mmu:72151
InParanoid:Q9D0F6 OrthoDB:EOG4RBQJX NextBio:335574 Bgee:Q9D0F6
CleanEx:MM_RFC5 Genevestigator:Q9D0F6 GermOnline:ENSMUSG00000029363
Uniprot:Q9D0F6
Length = 339
Score = 554 (200.1 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 38 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 97
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 98 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 157
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 158 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 187
Score = 316 (116.3 bits), Expect = 5.4e-47, Sum P(2) = 5.4e-47
Identities = 58/97 (59%), Positives = 77/97 (79%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+++E V+++ DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 200
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT 97
KA++ LS GDMR+ LNILQS A +V E+T++T
Sbjct: 201 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYT 236
Score = 273 (101.2 bits), Expect = 4.8e-42, Sum P(2) = 4.8e-42
Identities = 75/159 (47%), Positives = 95/159 (59%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL +L+SHQDI+STI+ I E L L+L Y GT + + L
Sbjct: 22 VEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLL------YG-PPGTGKTSTI--LAC 72
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 73 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 132
Query: 218 AQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAAT 256
AQNALRR + + + + + + K++ LQS T
Sbjct: 133 AQNALRRVIEKFTENTRFCLICNY--LSKIIPALQSRCT 169
Score = 201 (75.8 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
Identities = 41/65 (63%), Positives = 51/65 (78%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
GLAL DILTE+ L VHR++ P S+ + L+ KM+DIEYRL+ GTSEKIQLS+LIAAF R
Sbjct: 273 GLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQLSSLIAAFQVTR 332
Query: 524 DKLEA 528
D + A
Sbjct: 333 DLIVA 337
Score = 181 (68.8 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
Identities = 35/69 (50%), Positives = 46/69 (66%)
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
++ DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P KT+I NIL W+L
Sbjct: 196 ISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANILDWML 254
Query: 288 NESMDLCYK 296
N+ YK
Sbjct: 255 NQDFTTAYK 263
Score = 140 (54.3 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 90 VNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEI-------PESMLVDLVLKMSDIE 142
+N+D FT + + + TL L H DI++ + + P S+ + L+ KM+DIE
Sbjct: 254 LNQD--FTTAYKNIMELK--TLKGLALH-DILTEVHLFVHRVDFPSSVRIHLLTKMADIE 308
Query: 143 YRLAAGTSEKIQLSALIAAFNSARD 167
YRL+ GTSEKIQLS+LIAAF RD
Sbjct: 309 YRLSVGTSEKIQLSSLIAAFQVTRD 333
>UNIPROTKB|F1RKG3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000075072 OMA:ILACARQ
EMBL:CU468330 Ensembl:ENSSSCT00000010801 Uniprot:F1RKG3
Length = 354
Score = 554 (200.1 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 53 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 112
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 113 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 172
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 173 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 202
Score = 325 (119.5 bits), Expect = 7.4e-48, Sum P(2) = 7.4e-48
Identities = 61/97 (62%), Positives = 78/97 (80%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 156 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 215
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT 97
KA+I LS GDMR+ LNILQS A +V E+T++T
Sbjct: 216 MKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYT 251
Score = 282 (104.3 bits), Expect = 7.5e-43, Sum P(2) = 7.5e-43
Identities = 80/184 (43%), Positives = 106/184 (57%)
Query: 78 ILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIE--IPESMLVDLV 135
I+Q++A H + + + VEKYRP TLD+L+SHQDI+STI+ I E L L+
Sbjct: 14 IMQTSA--HKQQQQPEATKIRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLL 71
Query: 136 LKMSDIEYRLAAGTSEKIQLSALIAAFNSARDK---LEVLELNASDDRGIGIVRDQIFQF 192
L Y GT + + L A +DK VLELNASDDRGI IVR I F
Sbjct: 72 L------YG-PPGTGKTSTI--LACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSF 122
Query: 193 ASTKTMHKSSYKLIILDEADAMTNDAQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQ 252
AST+T+ K +KL+ILDEADAMT DAQNALRR + + + + + + K++ LQ
Sbjct: 123 ASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNY--LSKIIPALQ 180
Query: 253 SAAT 256
S T
Sbjct: 181 SRCT 184
Score = 199 (75.1 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 40/61 (65%), Positives = 49/61 (80%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
GLAL DILTEI L VHR++ P S+ + L+ KM+DIEYRL+ GT+EKIQLS+LIAAF R
Sbjct: 288 GLALNDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTR 347
Query: 524 D 524
D
Sbjct: 348 D 348
Score = 180 (68.4 bits), Expect = 8.0e-28, Sum P(2) = 8.0e-28
Identities = 35/72 (48%), Positives = 48/72 (66%)
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
K+ ++ DG KA+I LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 208 KVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 266
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 267 WMLNQDFTTAYR 278
Score = 137 (53.3 bits), Expect = 2.4e-41, Sum P(2) = 2.4e-41
Identities = 30/80 (37%), Positives = 52/80 (65%)
Query: 90 VNED-TIFTLLVSRVEKYRPSTLDELVSHQDI-ISTIEIPESMLVDLVLKMSDIEYRLAA 147
+N+D T + ++ + L+++++ + + ++ P S+ + L+ KM+DIEYRL+
Sbjct: 269 LNQDFTTAYRNIMELKTLKGLALNDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSV 328
Query: 148 GTSEKIQLSALIAAFNSARD 167
GT+EKIQLS+LIAAF RD
Sbjct: 329 GTNEKIQLSSLIAAFQVTRD 348
>UNIPROTKB|E2RCF4 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:AAEX03014719 RefSeq:XP_534696.3
ProteinModelPortal:E2RCF4 Ensembl:ENSCAFT00000015721 GeneID:477499
KEGG:cfa:477499 NextBio:20852966 Uniprot:E2RCF4
Length = 339
Score = 554 (200.1 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 38 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 97
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 98 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 157
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 158 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 187
Score = 315 (115.9 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 59/97 (60%), Positives = 77/97 (79%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+ +EKV+++ DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEEKVDLSEDG 200
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT 97
KA++ LS GDMR+ LNILQS A +V E+T++T
Sbjct: 201 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYT 236
Score = 276 (102.2 bits), Expect = 4.5e-42, Sum P(2) = 4.5e-42
Identities = 75/159 (47%), Positives = 96/159 (60%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L Y GT + + L
Sbjct: 22 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLL------YG-PPGTGKTSTI--LAC 72
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 73 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 132
Query: 218 AQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAAT 256
AQNALRR + + + + + + K++ LQS T
Sbjct: 133 AQNALRRVIEKFTENTRFCLICNY--LSKIIPALQSRCT 169
Score = 198 (74.8 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 41/61 (67%), Positives = 49/61 (80%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
GLAL DILTEI L VHR++ P S+ V L+ KM+DIEYRL+ GT+EKIQLS+LIAAF R
Sbjct: 273 GLALHDILTEIHLFVHRVDFPSSVRVHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTR 332
Query: 524 D 524
D
Sbjct: 333 D 333
Score = 177 (67.4 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
Identities = 34/72 (47%), Positives = 48/72 (66%)
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
K+ ++ DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 193 KVDLSEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 251
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 252 WMLNQDFTTAYR 263
Score = 138 (53.6 bits), Expect = 3.0e-40, Sum P(2) = 3.0e-40
Identities = 38/85 (44%), Positives = 52/85 (61%)
Query: 90 VNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEI-------PESMLVDLVLKMSDIE 142
+N+D FT + + + TL L H DI++ I + P S+ V L+ KM+DIE
Sbjct: 254 LNQD--FTTAYRNIMELK--TLKGLALH-DILTEIHLFVHRVDFPSSVRVHLLTKMADIE 308
Query: 143 YRLAAGTSEKIQLSALIAAFNSARD 167
YRL+ GT+EKIQLS+LIAAF RD
Sbjct: 309 YRLSVGTNEKIQLSSLIAAFQVTRD 333
>RGD|1309280 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1309280
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
GeneTree:ENSGT00550000075072 OMA:ILACARQ IPI:IPI00870052
Ensembl:ENSRNOT00000001498 UCSC:RGD:1309280 ArrayExpress:F1LQL0
Uniprot:F1LQL0
Length = 339
Score = 553 (199.7 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 38 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 97
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 98 DIVRGPILSFASTRTIFKRGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 157
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 158 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 187
Score = 316 (116.3 bits), Expect = 8.7e-47, Sum P(2) = 8.7e-47
Identities = 58/97 (59%), Positives = 77/97 (79%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+++E V+++ DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDG 200
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT 97
KA++ LS GDMR+ LNILQS A +V E+T++T
Sbjct: 201 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYT 236
Score = 272 (100.8 bits), Expect = 1.0e-41, Sum P(2) = 1.0e-41
Identities = 75/159 (47%), Positives = 95/159 (59%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL +L+SHQDI+STI+ I E L L+L Y GT + + L
Sbjct: 22 VEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLL------YG-PPGTGKTSTI--LAC 72
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 73 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKRGFKLVILDEADAMTQD 132
Query: 218 AQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAAT 256
AQNALRR + + + + + + K++ LQS T
Sbjct: 133 AQNALRRVIEKFTENTRFCLICNY--LSKIIPALQSRCT 169
Score = 199 (75.1 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
Identities = 41/65 (63%), Positives = 51/65 (78%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
GLAL DILTE+ L VHR++ P S+ + L+ KM+DIEYRL+ GTSEKIQLS+LIAAF R
Sbjct: 273 GLALHDILTEVHLFVHRVDFPSSVRMHLLTKMADIEYRLSVGTSEKIQLSSLIAAFQVTR 332
Query: 524 DKLEA 528
D + A
Sbjct: 333 DLIVA 337
Score = 181 (68.8 bits), Expect = 4.2e-28, Sum P(2) = 4.2e-28
Identities = 35/69 (50%), Positives = 46/69 (66%)
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
++ DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P KT+I NIL W+L
Sbjct: 196 ISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKTDIANILDWML 254
Query: 288 NESMDLCYK 296
N+ YK
Sbjct: 255 NQDFTTAYK 263
Score = 138 (53.6 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 90 VNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEI-------PESMLVDLVLKMSDIE 142
+N+D FT + + + TL L H DI++ + + P S+ + L+ KM+DIE
Sbjct: 254 LNQD--FTTAYKNIMELK--TLKGLALH-DILTEVHLFVHRVDFPSSVRMHLLTKMADIE 308
Query: 143 YRLAAGTSEKIQLSALIAAFNSARD 167
YRL+ GTSEKIQLS+LIAAF RD
Sbjct: 309 YRLSVGTSEKIQLSSLIAAFQVTRD 333
>FB|FBgn0032244 [details] [associations]
symbol:RfC3 "Replication factor C subunit 3" species:7227
"Drosophila melanogaster" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 EMBL:AE014134
GO:GO:0022008 GO:GO:0003677 GO:GO:0006260 GO:GO:0046331 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075072 OMA:ILACARQ HSSP:Q8U4J3 EMBL:AF247499
EMBL:AY119188 RefSeq:NP_609399.1 UniGene:Dm.3298 SMR:Q9VKW3
IntAct:Q9VKW3 MINT:MINT-284572 STRING:Q9VKW3
EnsemblMetazoa:FBtr0080019 GeneID:34423 KEGG:dme:Dmel_CG5313
UCSC:CG5313-RA FlyBase:FBgn0032244 InParanoid:Q9VKW3
OrthoDB:EOG451C6M GenomeRNAi:34423 NextBio:788424 Uniprot:Q9VKW3
Length = 332
Score = 571 (206.1 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 109/144 (75%), Positives = 123/144 (85%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
I RFI +LPHLLFYGPPGTGKT+TILACAR+LY+ QF +MVLELNASDDRGIGIVR
Sbjct: 35 ITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQFKSMVLELNASDDRGIGIVRG 94
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+T+ ++KLIILDEADAMTNDAQNALRRIIEK+T NVRFC+ICNYLSKI P
Sbjct: 95 QILNFASTRTIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIP 154
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLD 440
A+QSRCTRFRF PL +M RL+
Sbjct: 155 ALQSRCTRFRFAPLSQDQMMPRLE 178
Score = 326 (119.8 bits), Expect = 1.0e-42, Sum P(2) = 1.0e-42
Identities = 68/141 (48%), Positives = 90/141 (63%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFC+ICNYLSKI PA+QSRCTRFRF PL +M RL+ +IE E V +T DG
Sbjct: 133 IEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDI 120
K+A++ L+ GDMRKVLN+LQS A D VNED ++ + + + L L+S +
Sbjct: 193 KRALLTLAKGDMRKVLNVLQSTVMAF-DTVNEDNVYMCVGYPLRQDIEQILKALLSGSSL 251
Query: 121 ISTIEIPESMLVDLVLKMSDI 141
+ + ES L + DI
Sbjct: 252 EDSFKTVESAKYARGLALEDI 272
Score = 285 (105.4 bits), Expect = 6.1e-38, Sum P(2) = 6.1e-38
Identities = 76/157 (48%), Positives = 95/157 (60%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS LD+L+SH++IISTI I L L+ Y GT + + A
Sbjct: 14 VEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLF------YG-PPGTGKTSTILACAR 66
Query: 161 AFNSARD-KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 219
S + K VLELNASDDRGIGIVR QI FAST+T+ ++KLIILDEADAMTNDAQ
Sbjct: 67 QLYSPQQFKSMVLELNASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDAQ 126
Query: 220 NALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAAT 256
NALRR + D + + + + K++ LQS T
Sbjct: 127 NALRRIIEKYTDNVRFCVICNY--LSKIIPALQSRCT 161
Score = 168 (64.2 bits), Expect = 5.0e-21, Sum P(2) = 5.0e-21
Identities = 35/63 (55%), Positives = 45/63 (71%)
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+T DGK+A++ L+ GDMRKVLN+LQS A D VNED VY VGYP + +I IL+ LL
Sbjct: 188 ITEDGKRALLTLAKGDMRKVLNVLQSTVMAF-DTVNEDNVYMCVGYPLRQDIEQILKALL 246
Query: 288 NES 290
+ S
Sbjct: 247 SGS 249
Score = 149 (57.5 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 32/61 (52%), Positives = 44/61 (72%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
GLAL DI+TE+ L V RLE+P S++ L++K++ IE RLA G +E Q +AL+AAF R
Sbjct: 266 GLALEDIITELHLFVMRLELPMSVMNKLIVKLAQIEERLAKGCTEVAQTAALVAAFFICR 325
Query: 524 D 524
D
Sbjct: 326 D 326
>UNIPROTKB|J9NUF8 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
EMBL:AAEX03014719 Ensembl:ENSCAFT00000046634 Uniprot:J9NUF8
Length = 316
Score = 554 (200.1 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 38 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 97
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 98 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 157
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 158 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 187
Score = 315 (115.9 bits), Expect = 5.2e-33, Sum P(2) = 5.2e-33
Identities = 59/97 (60%), Positives = 77/97 (79%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+ +EKV+++ DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEEKVDLSEDG 200
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT 97
KA++ LS GDMR+ LNILQS A +V E+T++T
Sbjct: 201 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYT 236
Score = 276 (102.2 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 75/159 (47%), Positives = 96/159 (60%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TL++L+SHQDI+STI+ I E L L+L Y GT + + L
Sbjct: 22 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLL------YG-PPGTGKTSTI--LAC 72
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 73 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 132
Query: 218 AQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAAT 256
AQNALRR + + + + + + K++ LQS T
Sbjct: 133 AQNALRRVIEKFTENTRFCLICNY--LSKIIPALQSRCT 169
Score = 177 (67.4 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 34/72 (47%), Positives = 48/72 (66%)
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
K+ ++ DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 193 KVDLSEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 251
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 252 WMLNQDFTTAYR 263
Score = 69 (29.3 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 18/29 (62%), Positives = 20/29 (68%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLV 492
GLAL DILTEI L VHR S LV++V
Sbjct: 273 GLALHDILTEIHLFVHRGN-SRSSLVEMV 300
>UNIPROTKB|Q32PI3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
HOGENOM:HOG000224152 GeneTree:ENSGT00550000075072 OMA:ILACARQ
CTD:5985 OrthoDB:EOG4RBQJX EMBL:DAAA02045332 EMBL:BC108105
IPI:IPI00688331 RefSeq:NP_001068826.1 UniGene:Bt.21988 SMR:Q32PI3
STRING:Q32PI3 Ensembl:ENSBTAT00000009392 GeneID:508389
KEGG:bta:508389 NextBio:20868499 Uniprot:Q32PI3
Length = 316
Score = 554 (200.1 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 104/150 (69%), Positives = 123/150 (82%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I +FI E+ LPHLL YGPPGTGKT+TILACA++LY +F +MVLELNASDDRGI
Sbjct: 38 DILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGI 97
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
IVR I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKFT N RFC+ICNYL
Sbjct: 98 DIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL 157
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
SKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 158 SKIIPALQSRCTRFRFGPLTPELMVPRLEH 187
Score = 325 (119.5 bits), Expect = 6.8e-34, Sum P(2) = 6.8e-34
Identities = 61/97 (62%), Positives = 78/97 (80%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 141 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 200
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT 97
KA+I LS GDMR+ LNILQS A +V E+T++T
Sbjct: 201 MKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYT 236
Score = 281 (104.0 bits), Expect = 8.7e-29, Sum P(2) = 8.7e-29
Identities = 76/159 (47%), Positives = 96/159 (60%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLD+L+SHQDI+STI+ I E L L+L Y GT + + L
Sbjct: 22 VEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLL------YG-PPGTGKTSTI--LAC 72
Query: 161 AFNSARDK---LEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTND 217
A +DK VLELNASDDRGI IVR I FAST+T+ K +KL+ILDEADAMT D
Sbjct: 73 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQD 132
Query: 218 AQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAAT 256
AQNALRR + + + + + + K++ LQS T
Sbjct: 133 AQNALRRVIEKFTENTRFCLICNY--LSKIIPALQSRCT 169
Score = 180 (68.4 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 35/72 (48%), Positives = 48/72 (66%)
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
K+ ++ DG KA+I LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 193 KVDISEDGMKALITLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 251
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 252 WMLNQDFTTAYR 263
Score = 66 (28.3 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDI 498
GLAL DILTEI L VHR S + L +K +
Sbjct: 273 GLALHDILTEIHLFVHRGNSCSSPVQKLCIKQHSL 307
>WB|WBGene00018409 [details] [associations]
symbol:F44B9.8 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:FO080400 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:VIAFHER
GeneTree:ENSGT00550000075072 PIR:S44809 RefSeq:NP_498750.2
ProteinModelPortal:P34429 SMR:P34429 DIP:DIP-27001N IntAct:P34429
MINT:MINT-1095598 STRING:P34429 PaxDb:P34429 EnsemblMetazoa:F44B9.8
GeneID:176131 KEGG:cel:CELE_F44B9.8 UCSC:F44B9.8 CTD:176131
WormBase:F44B9.8 InParanoid:P34429 NextBio:891256 Uniprot:P34429
Length = 368
Score = 507 (183.5 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
Identities = 99/154 (64%), Positives = 119/154 (77%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +FI+ LPHLLFYGPPGTGKTTT+LA AR++Y+ + +MVLELNASD+RGI +VR+
Sbjct: 53 LTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYSPTKMASMVLELNASDERGIDVVRN 112
Query: 357 QIFQFASTKTMHKSS---------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII 407
I FA TK + S +KL+ILDEADAMT DAQNALRR+IEK+T NVRFCII
Sbjct: 113 TIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCII 172
Query: 408 CNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
CNYL+ I PAIQSRCTRFRF PLD LI+ RL+Y
Sbjct: 173 CNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEY 206
Score = 323 (118.8 bits), Expect = 1.0e-28, P = 1.0e-28
Identities = 72/175 (41%), Positives = 106/175 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNYL+ I PAIQSRCTRFRF PLD LI+ RL+Y++E E++ +TPDG
Sbjct: 160 IEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVETEQLKMTPDG 219
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--Q 118
K A++ +S GDMR V+N LQS A + D V+E+T++ + K + L++ +
Sbjct: 220 KDALLIVSKGDMRTVINTLQSTAMSF-DTVSENTVYQCIGQPTPKEMKEVVKTLLNDPSK 278
Query: 119 DIISTIEIP--ES--MLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKL 169
++TI+ E+ L D++ + D + L +SA+I + L
Sbjct: 279 KCMNTIQTKLFENGYALQDVITHLHDFVFTLDIPDEA---MSAIITGLGEVEENL 330
Score = 217 (81.4 bits), Expect = 6.6e-35, Sum P(3) = 6.6e-35
Identities = 61/146 (41%), Positives = 83/146 (56%)
Query: 103 VEKYRPSTLDELVSHQDIISTI-EIPESMLVDLVLKMSDIEYRLAAGTSEKIQ-LSALIA 160
VEKYRPS LDELV+H+ I+ T+ + E+ + +L + GT + L+A
Sbjct: 32 VEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLL------FYGPPGTGKTTTVLAAARQ 85
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS---------YKLIILDEA 211
++ + VLELNASD+RGI +VR+ I FA TK + S +KL+ILDEA
Sbjct: 86 MYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEA 145
Query: 212 DAMTNDAQNALRRKLPVTPDGKKAII 237
DAMT DAQNALRR + D + I
Sbjct: 146 DAMTKDAQNALRRVIEKYTDNVRFCI 171
Score = 159 (61.0 bits), Expect = 6.6e-35, Sum P(3) = 6.6e-35
Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
+L +TPDGK A++ +S GDMR V+N LQS A + D V+E+TVY +G PT E+ +++
Sbjct: 212 QLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSF-DTVSENTVYQCIGQPTPKEMKEVVK 270
Query: 285 WLLNESMDLC 294
LLN+ C
Sbjct: 271 TLLNDPSKKC 280
Score = 104 (41.7 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
G AL D++T + V L+IP+ + ++ + ++E L+ G S + QL+A++AAF A+
Sbjct: 292 GYALQDVITHLHDFVFTLDIPDEAMSAIITGLGEVEENLSTGCSNETQLAAVVAAFFEAK 351
>POMBASE|SPAC27E2.10c [details] [associations]
symbol:rfc3 "DNA replication factor C complex subunit
Rfc3" species:4896 "Schizosaccharomyces pombe" [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IC;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=TAS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IC]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0065007 "biological regulation" evidence=NAS]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC27E2.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0000077 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006261 GO:GO:0000790
GO:GO:0043596 KO:K10756 GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 EMBL:AB017039 EMBL:AB017040 EMBL:AJ012839 PIR:T43410
RefSeq:XP_001713099.1 ProteinModelPortal:O14003 SMR:O14003
STRING:O14003 EnsemblFungi:SPAC27E2.10c.1 GeneID:2541493
KEGG:spo:SPAC27E2.10c HOGENOM:HOG000224152 OMA:VIAFHER
OrthoDB:EOG4K0TX8 NextBio:20802592 Uniprot:O14003
Length = 342
Score = 496 (179.7 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 95/150 (63%), Positives = 117/150 (78%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + +FI N +PH+LFYGPPGTGKT+TILACARK+Y + ++ELNASDDRGI
Sbjct: 42 DIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGP-NYRNQLMELNASDDRGI 100
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
VR+QI FAST+ + S++K+IILDEADAMT AQNALRR+IEK+T NVRFCIICNY+
Sbjct: 101 DAVREQIKNFASTRQIFASTFKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYI 160
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+KI PAIQSRCTRFRF PL I +D+
Sbjct: 161 NKISPAIQSRCTRFRFQPLPPKEIEKTVDH 190
Score = 294 (108.6 bits), Expect = 3.4e-35, Sum P(2) = 3.4e-35
Identities = 64/141 (45%), Positives = 91/141 (64%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T NVRFCIICNY++KI+PAIQSRCTRFRF PL I +D+VI+ E N+ PD
Sbjct: 144 IEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDA 203
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL----VSRVEKYRPSTL-DELV 115
K A++ LS GDMRK LNILQ+ A+ D ++ I+ + S ++ + S + DE V
Sbjct: 204 KMAVLRLSKGDMRKALNILQACHAAY-DHIDVSAIYNCVGHPHPSDIDYFLKSIMNDEFV 262
Query: 116 SHQDIISTIEIPESMLVDLVL 136
+ IS+I+ + + + +L
Sbjct: 263 IAFNTISSIKQQKGLALQDIL 283
Score = 241 (89.9 bits), Expect = 1.8e-38, Sum P(3) = 1.8e-38
Identities = 59/122 (48%), Positives = 81/122 (66%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP+ L+++VSH+DIIST+E + + + V M + Y GT + + A
Sbjct: 26 VEKYRPANLEDVVSHKDIISTLE--KFISSNRVPHM--LFYG-PPGTGKTSTILACARKI 80
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
+ +++ELNASDDRGI VR+QI FAST+ + S++K+IILDEADAMT AQNAL
Sbjct: 81 YGPNYRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAMTLAAQNAL 140
Query: 223 RR 224
RR
Sbjct: 141 RR 142
Score = 139 (54.0 bits), Expect = 1.8e-38, Sum P(3) = 1.8e-38
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+ PD K A++ LS GDMRK LNILQ+ A+ D ++ +YN VG+P ++I L+ ++
Sbjct: 199 IDPDAKMAVLRLSKGDMRKALNILQACHAAY-DHIDVSAIYNCVGHPHPSDIDYFLKSIM 257
Query: 288 NESMDLCY 295
N+ + +
Sbjct: 258 NDEFVIAF 265
Score = 113 (44.8 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
GLAL DILT I + LEI + + ++ +++ IE+R++ G SEKIQLSA+IA+ +
Sbjct: 276 GLALQDILTCIFEALDELEIKPNAKIFILDQLATIEHRMSFGCSEKIQLSAMIASIKTGV 335
Query: 524 D 524
D
Sbjct: 336 D 336
>TAIR|locus:2204710 [details] [associations]
symbol:RFC3 "replication factor C subunit 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0031348 "negative regulation of defense
response" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0031348 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 EMBL:AC010704 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:ILACARQ HSSP:Q8U4J3
EMBL:AY065452 EMBL:AY117282 IPI:IPI00521569 PIR:A96804
RefSeq:NP_177871.1 UniGene:At.28476 UniGene:At.70634
ProteinModelPortal:Q9CAQ8 SMR:Q9CAQ8 STRING:Q9CAQ8 PaxDb:Q9CAQ8
PRIDE:Q9CAQ8 EnsemblPlants:AT1G77470.1 GeneID:844083
KEGG:ath:AT1G77470 TAIR:At1g77470 InParanoid:Q9CAQ8
PhylomeDB:Q9CAQ8 ProtClustDB:CLSN2682996 ArrayExpress:Q9CAQ8
Genevestigator:Q9CAQ8 Uniprot:Q9CAQ8
Length = 369
Score = 462 (167.7 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 94/152 (61%), Positives = 118/152 (77%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I+R +EN+LPHLL YGPPGTGKT+TILA ARKLY ++ M+LELNASDDRGI
Sbjct: 58 DIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGP-KYRNMILELNASDDRGI 116
Query: 352 GIVRDQIFQFASTKT--MHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+VR QI FAST++ + KSS KL++LDEADAMT DAQ ALRR+IEK+T + RF +I N
Sbjct: 117 DVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGN 176
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+++KI PA+QSRCTRFRF PLD + RL +
Sbjct: 177 HVNKIIPALQSRCTRFRFAPLDGVHMSQRLKH 208
Score = 250 (93.1 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 69/159 (43%), Positives = 95/159 (59%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP +LD++ +H+DII TI+ E+ L L+L Y GT + + A+
Sbjct: 42 VEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLL------YG-PPGTGKTSTILAVAR 94
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKT--MHKSSYKLIILDEADAMTNDA 218
+ + +LELNASDDRGI +VR QI FAST++ + KSS KL++LDEADAMT DA
Sbjct: 95 KLYGPKYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDA 154
Query: 219 QNALRRKLP-VTPDGKKAIIDLSDGDMRKVLNILQSAAT 256
Q ALRR + T + A+I + K++ LQS T
Sbjct: 155 QFALRRVIEKYTKSTRFALIG---NHVNKIIPALQSRCT 190
Score = 237 (88.5 bits), Expect = 9.8e-29, Sum P(2) = 9.8e-29
Identities = 49/93 (52%), Positives = 67/93 (72%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T + RF +I N+++KI PA+QSRCTRFRF PLD + RL +VIE E++ V+ G
Sbjct: 162 IEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSDCG 221
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNED 93
A++ LS+GDMRK LNILQS A + E+ E+
Sbjct: 222 LAALVRLSNGDMRKALNILQSTHMA-SKEITEE 253
Score = 144 (55.7 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 26/60 (43%), Positives = 45/60 (75%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
GLA+ DI+ EI+L + ++++P ++ V L+ ++DIEYRL+ G ++K+QL A+I+ F AR
Sbjct: 302 GLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYRLSFGCNDKLQLGAIISTFTHAR 361
Score = 142 (55.0 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 54/201 (26%), Positives = 87/201 (43%)
Query: 105 KYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNS 164
KYR L EL + D I++ + D S + L + + + L A
Sbjct: 100 KYRNMIL-ELNASDD--RGIDVVRQQIQDFASTQS---FSLGKSSVKLVLLDEADAMTKD 153
Query: 165 ARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALR 223
A+ L V+E R ++ + + + + ++ LD M+ ++ +
Sbjct: 154 AQFALRRVIEKYTKSTR-FALIGNHVNKIIPALQSRCTRFRFAPLDGVH-MSQRLKHVIE 211
Query: 224 -RKLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHAD-------EVNEDTVYNSVGYPT 275
+L V+ G A++ LS+GDMRK LNILQS A + ++ E+ VY G P
Sbjct: 212 AERLVVSDCGLAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEEDVYLCTGNPL 271
Query: 276 KTEITNILRWLLNESMDLCYK 296
+I I WLLN+ D CYK
Sbjct: 272 PKDIEQISHWLLNKPFDECYK 292
Score = 106 (42.4 bits), Expect = 9.3e-25, Sum P(2) = 9.3e-25
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 100 VSRVEKYRPSTLDELVSHQDI-ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
VS ++ + + ++V + I I++P ++ V L+ ++DIEYRL+ G ++K+QL A+
Sbjct: 294 VSEIKTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYRLSFGCNDKLQLGAI 353
Query: 159 IAAFNSAR 166
I+ F AR
Sbjct: 354 ISTFTHAR 361
>UNIPROTKB|F8W9B4 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 KO:K10756
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AC131159 RefSeq:NP_001123584.1
UniGene:Hs.731908 DNASU:5985 GeneID:5985 KEGG:hsa:5985 CTD:5985
HGNC:HGNC:9973 GenomeRNAi:5985 NextBio:23303 IPI:IPI00908568
ProteinModelPortal:F8W9B4 SMR:F8W9B4 PRIDE:F8W9B4
Ensembl:ENST00000229043 ArrayExpress:F8W9B4 Bgee:F8W9B4
Uniprot:F8W9B4
Length = 255
Score = 395 (144.1 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
Identities = 75/103 (72%), Positives = 87/103 (84%)
Query: 339 MVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF 398
MVLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAMT DAQNALRR+IEKF
Sbjct: 1 MVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKF 60
Query: 399 TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
T N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++
Sbjct: 61 TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 103
Score = 324 (119.1 bits), Expect = 9.7e-48, Sum P(2) = 9.7e-48
Identities = 60/97 (61%), Positives = 78/97 (80%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFC+ICNYLSKI PA+QSRCTRFRFGPL L++ RL++V+E+EKV+++ DG
Sbjct: 57 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 116
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFT 97
KA++ LS GDMR+ LNILQS A +V E+T++T
Sbjct: 117 MKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYT 152
Score = 203 (76.5 bits), Expect = 4.6e-34, Sum P(2) = 4.6e-34
Identities = 45/86 (52%), Positives = 58/86 (67%)
Query: 171 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRKLPVTP 230
VLELNASDDRGI I+R I FAST+T+ K +KL+ILDEADAMT DAQNALRR +
Sbjct: 2 VLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFT 61
Query: 231 DGKKAIIDLSDGDMRKVLNILQSAAT 256
+ + + + + K++ LQS T
Sbjct: 62 ENTRFCLICNY--LSKIIPALQSRCT 85
Score = 199 (75.1 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
Identities = 41/65 (63%), Positives = 51/65 (78%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
GLAL DILTEI L VHR++ P S+ + L+ KM+DIEYRL+ GT+EKIQLS+LIAAF R
Sbjct: 189 GLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTR 248
Query: 524 DKLEA 528
D + A
Sbjct: 249 DLIVA 253
Score = 179 (68.1 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 34/72 (47%), Positives = 48/72 (66%)
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
K+ ++ DG KA++ LS GDMR+ LNILQS A +V E+TVY G+P K++I NIL
Sbjct: 109 KVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG-KVTEETVYTCTGHPLKSDIANILD 167
Query: 285 WLLNESMDLCYK 296
W+LN+ Y+
Sbjct: 168 WMLNQDFTTAYR 179
Score = 138 (53.6 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 90 VNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEI-------PESMLVDLVLKMSDIE 142
+N+D FT + + + TL L H DI++ I + P S+ + L+ KM+DIE
Sbjct: 170 LNQD--FTTAYRNITELK--TLKGLALH-DILTEIHLFVHRVDFPSSVRIHLLTKMADIE 224
Query: 143 YRLAAGTSEKIQLSALIAAFNSARD 167
YRL+ GT+EKIQLS+LIAAF RD
Sbjct: 225 YRLSVGTNEKIQLSSLIAAFQVTRD 249
>DICTYBASE|DDB_G0282235 [details] [associations]
symbol:rfc5 "replication factor C subunit 5"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006272 "leading strand elongation" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
dictyBase:DDB_G0282235 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0016887 GO:GO:0006298
KO:K10756 EMBL:AAFI02000046 eggNOG:COG0470 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 RefSeq:XP_640301.1 HSSP:P38629
ProteinModelPortal:Q54ST4 STRING:Q54ST4 EnsemblProtists:DDB0232229
GeneID:8623477 KEGG:ddi:DDB_G0282235 OMA:ILACARQ Uniprot:Q54ST4
Length = 347
Score = 465 (168.7 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 93/141 (65%), Positives = 109/141 (77%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ I + ID N LPHLLFYGPPGTGKT+TI A ARKLY ++ MVLELNASDDRGI
Sbjct: 43 DITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYGD-NYSRMVLELNASDDRGI 101
Query: 352 GIVRDQIFQFASTKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+VR+QI FAS+ ++ YKLIILDEAD+MTN AQ ALRR+IEK+T RFCI+CN
Sbjct: 102 DVVREQIKTFASSMFFFNTTVPYKLIILDEADSMTNIAQTALRRVIEKYTKTTRFCIVCN 161
Query: 410 YLSKIPPAIQSRCTRFRFGPL 430
Y+ KI PA+QSRCTRFRF PL
Sbjct: 162 YVIKIIPALQSRCTRFRFSPL 182
Score = 248 (92.4 bits), Expect = 3.5e-29, Sum P(2) = 3.5e-29
Identities = 49/97 (50%), Positives = 64/97 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEK+T RFCI+CNY+ KI PA+QSRCTRFRF PL + RL +IE+E V V
Sbjct: 147 IEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKENVKVDSKA 206
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE-VNEDTIF 96
A+++L GDMRK LNILQS + + D + E+ I+
Sbjct: 207 MNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIY 243
Score = 227 (85.0 bits), Expect = 6.9e-36, Sum P(3) = 6.9e-36
Identities = 57/124 (45%), Positives = 75/124 (60%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP LD+L++H+DI TI + L+D + + + GT + + A+
Sbjct: 27 VEKYRPKNLDDLIAHEDITQTI----TKLIDNNT-LPHLLFYGPPGTGKTSTIQAIARKL 81
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS--YKLIILDEADAMTNDAQN 220
VLELNASDDRGI +VR+QI FAS+ ++ YKLIILDEAD+MTN AQ
Sbjct: 82 YGDNYSRMVLELNASDDRGIDVVREQIKTFASSMFFFNTTVPYKLIILDEADSMTNIAQT 141
Query: 221 ALRR 224
ALRR
Sbjct: 142 ALRR 145
Score = 130 (50.8 bits), Expect = 6.9e-36, Sum P(3) = 6.9e-36
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 223 RRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADE-VNEDTVYNSVGYPTKTEITN 281
+ + V A+++L GDMRK LNILQS + + D + E+ +Y GYP ++I
Sbjct: 197 KENVKVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGYPMPSDIEL 256
Query: 282 ILRWLLNESMDLCYK 296
++ WLLN + ++
Sbjct: 257 MVDWLLNSDYEEAFQ 271
Score = 124 (48.7 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
GL+L DI+ + V ++++ +L L+ +SDIEY L+ G+SEK+QL +L+ F +R
Sbjct: 281 GLSLNDIIATLQKFVVQIDLDNVILCKLLSHLSDIEYNLSIGSSEKLQLGSLVGCFQLSR 340
Query: 524 D 524
D
Sbjct: 341 D 341
Score = 113 (44.8 bits), Expect = 4.9e-28, Sum P(2) = 4.9e-28
Identities = 23/69 (33%), Positives = 45/69 (65%)
Query: 100 VSRVEKYRPSTLDELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
+S ++K + +L+++++ Q + I++ +L L+ +SDIEY L+ G+SEK+QL +L
Sbjct: 273 ISDLKKKKGLSLNDIIATLQKFVVQIDLDNVILCKLLSHLSDIEYNLSIGSSEKLQLGSL 332
Query: 159 IAAFNSARD 167
+ F +RD
Sbjct: 333 VGCFQLSRD 341
>SGD|S000005234 [details] [associations]
symbol:RFC3 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IPI] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA] [GO:0006272 "leading
strand elongation" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007062 "sister chromatid cohesion" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000005234
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:BK006947
GO:GO:0016887 GO:GO:0006298 KO:K10756 eggNOG:COG0470 EMBL:U23084
GO:GO:0031390 GO:GO:0007062 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 GO:GO:0031391 EMBL:Z71566 PDB:1SXJ PDBsum:1SXJ
GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8
EMBL:L18755 EMBL:U26029 PIR:A36988 RefSeq:NP_014109.1
ProteinModelPortal:P38629 SMR:P38629 DIP:DIP-2529N IntAct:P38629
MINT:MINT-540713 STRING:P38629 PaxDb:P38629 PeptideAtlas:P38629
EnsemblFungi:YNL290W GeneID:855426 KEGG:sce:YNL290W CYGD:YNL290w
GeneTree:ENSGT00550000075072 OMA:YAHKLTP EvolutionaryTrace:P38629
NextBio:979295 Genevestigator:P38629 GermOnline:YNL290W
Uniprot:P38629
Length = 340
Score = 479 (173.7 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 90/143 (62%), Positives = 113/143 (79%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ +F+DE +LPHLLFYGPPGTGKT+TI+A AR++Y K ++ MVLELNASDDRGI +VR+
Sbjct: 37 VRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVLELNASDDRGIDVVRN 95
Query: 357 QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
QI FAST+ + +KLIILDEADAMTN AQNALRR+IE++T N RFC++ NY K+ P
Sbjct: 96 QIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTP 155
Query: 417 AIQSRCTRFRFGPLDSSLIMSRL 439
A+ SRCTRFRF PL I R+
Sbjct: 156 ALLSRCTRFRFQPLPQEAIERRI 178
Score = 259 (96.2 bits), Expect = 3.8e-29, Sum P(2) = 3.8e-29
Identities = 50/100 (50%), Positives = 72/100 (72%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T N RFC++ NY K+TPA+ SRCTRFRF PL I R+ V+ EK+ ++P+
Sbjct: 134 IERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNA 193
Query: 61 KKAIIDLSDGDMRKVLNILQSA-ATAH---ADEVNEDTIF 96
+KA+I+LS+GDMR+VLN+LQS AT DE+++D I+
Sbjct: 194 EKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIY 233
Score = 243 (90.6 bits), Expect = 7.1e-38, Sum P(3) = 7.1e-38
Identities = 59/122 (48%), Positives = 74/122 (60%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP TLDE+ ++I+T+ VD K+ + + GT + + AL
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVR----KFVDEG-KLPHLLFYGPPGTGKTSTIVALAREI 70
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNAL 222
VLELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQNAL
Sbjct: 71 YGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNAL 130
Query: 223 RR 224
RR
Sbjct: 131 RR 132
Score = 146 (56.5 bits), Expect = 7.1e-38, Sum P(3) = 7.1e-38
Identities = 33/94 (35%), Positives = 57/94 (60%)
Query: 212 DAMTNDAQNAL-RRKLPVTPDGKKAIIDLSDGDMRKVLNILQSA-ATAH---ADEVNEDT 266
+A+ N L KL ++P+ +KA+I+LS+GDMR+VLN+LQS AT DE+++D
Sbjct: 172 EAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDV 231
Query: 267 VYNSVGYPTKTEITNILRWLLNESMDLC-YKINR 299
+Y G P +++ +L+ +L + Y +N+
Sbjct: 232 IYECCGAPRPSDLKAVLKSILEDDWGTAHYTLNK 265
Score = 93 (37.8 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 464 GLALTDILTEISLLVHRLEIP-ESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
GLAL D++ I ++ E+ E V L+ K++DIEY ++ G +++IQ SA+I A ++
Sbjct: 271 GLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQGSAVIGAIKAS 330
Score = 75 (31.5 bits), Expect = 2.9e-27, Sum P(2) = 2.9e-27
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 120 IISTIEIP-ESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELN 175
I+ E+ E V L+ K++DIEY ++ G +++IQ SA+I A ++ + E ++ N
Sbjct: 284 ILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQGSAVIGAIKASFEN-ETVKAN 339
>ASPGD|ASPL0000017750 [details] [associations]
symbol:AN8064 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0031389 "Rad17 RFC-like complex" evidence=IEA] [GO:0006272
"leading strand elongation" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000077 "DNA damage
checkpoint" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:BN001302 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:AACD01000139 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8 OMA:ILACARQ
RefSeq:XP_681333.1 ProteinModelPortal:Q5AUG6 STRING:Q5AUG6
EnsemblFungi:CADANIAT00004090 GeneID:2869010 KEGG:ani:AN8064.2
Uniprot:Q5AUG6
Length = 398
Score = 459 (166.6 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 97/160 (60%), Positives = 114/160 (71%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ INRF++ N+LPHLL YGPPGTGKT+TILA AR++Y MVLELNASDDRGI
Sbjct: 64 DILATINRFVEANQLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGI 123
Query: 352 GIVRDQIFQFASTKTMH--------KSS---YKLIILDEADAMTNDAQNALRRIIEKFTT 400
+VR+QI FASTK + KSS +KLIILDEADAMT+ AQ ALRRI+EK+T
Sbjct: 124 DVVREQIKTFASTKQIFSMAPSATGKSSLASFKLIILDEADAMTSTAQMALRRIMEKYTA 183
Query: 401 NVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
N RFCII NY K+ PA+ SRCTRFRF PL I +D
Sbjct: 184 NTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRVLID 223
Score = 232 (86.7 bits), Expect = 9.7e-17, P = 9.7e-17
Identities = 63/181 (34%), Positives = 93/181 (51%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+T N RFCII NY K++PA+ SRCTRFRF PL I +D VIE+E V + P+
Sbjct: 178 MEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRVLIDQVIEKEDVRIQPEA 237
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDI 120
+++ LS GDMR+ LN+LQ+ HA L + + + E ++++ I
Sbjct: 238 VDSLVTLSRGDMRRALNVLQAC---HASSK------PLPIKNAPQDQAVPEPETITNETI 288
Query: 121 ISTIEIPE----SMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR-DKLEVLELN 175
I P +V +L SD+ L + KI +A SA ++L LE+
Sbjct: 289 YDCIAAPHPADIQQIVTTLLATSDVTSCLNTLNTLKINKGLALADILSALGEQLYRLEVP 348
Query: 176 A 176
A
Sbjct: 349 A 349
Score = 222 (83.2 bits), Expect = 3.4e-26, Sum P(3) = 3.4e-26
Identities = 64/136 (47%), Positives = 84/136 (61%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+TLD++ H+DI++TI + + L L+L Y GT + + AL
Sbjct: 48 VEKYRPNTLDDVSGHKDILATINRFVEANQLPHLLL------YG-PPGTGKTSTILALAR 100
Query: 161 AFNSARDKLE-VLELNASDDRGIGIVRDQIFQFASTKTMH--------KSS---YKLIIL 208
+++ + VLELNASDDRGI +VR+QI FASTK + KSS +KLIIL
Sbjct: 101 RIYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSATGKSSLASFKLIIL 160
Query: 209 DEADAMTNDAQNALRR 224
DEADAMT+ AQ ALRR
Sbjct: 161 DEADAMTSTAQMALRR 176
Score = 105 (42.0 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNS 521
GLAL DIL+ + ++RLE+P + + +++IE+RL+AG SE +Q L+ +
Sbjct: 328 GLALADILSALGEQLYRLEVPAQTRITWLEGLAEIEWRLSAGGSETVQTGGLVGVIRN 385
Score = 72 (30.4 bits), Expect = 3.4e-26, Sum P(3) = 3.4e-26
Identities = 24/99 (24%), Positives = 42/99 (42%)
Query: 208 LDEADAMTNDAQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSA------------- 254
L E D Q + + + P+ +++ LS GDMR+ LN+LQ+
Sbjct: 213 LKEQDIRVLIDQVIEKEDVRIQPEAVDSLVTLSRGDMRRALNVLQACHASSKPLPIKNAP 272
Query: 255 ---ATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNES 290
A + + +T+Y+ + P +I I+ LL S
Sbjct: 273 QDQAVPEPETITNETIYDCIAAPHPADIQQIVTTLLATS 311
>CGD|CAL0003213 [details] [associations]
symbol:RCF3 species:5476 "Candida albicans" [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1 RFC-like
complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0000077
"DNA damage checkpoint" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 CGD:CAL0003213 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224152 EMBL:AACQ01000224
RefSeq:XP_710951.1 ProteinModelPortal:Q59ML2 SMR:Q59ML2
STRING:Q59ML2 GeneID:3647440 KEGG:cal:CaO19.3211 Uniprot:Q59ML2
Length = 361
Score = 454 (164.9 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 96/189 (50%), Positives = 127/189 (67%)
Query: 267 VYNSVGYPTKTEITNILRWL---LNE---SMDLCYKINRFIDENELPHLLFYGPPGTGKT 320
VY S+ Y T + + ++ L E ++ + +F++ +LPHLLFYGP GTGKT
Sbjct: 11 VYASLFYDTNPLFSRVEKYRPDSLEEVKGQQEIVDTVRKFVETGKLPHLLFYGPSGTGKT 70
Query: 321 TTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK---------TMHKSS 371
+TI+A A+++Y + M+LELNASDDRGI +VR+QI FAST+ T +
Sbjct: 71 STIIALAKEIYGATNYKNMILELNASDDRGIDVVRNQIKNFASTRQIFTKNTSQTASNNQ 130
Query: 372 YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLD 431
+KLIILDEADAMTN AQN+LRR+IEKFT N RFCI+ NY K+ PA+ SRCTRFRF P+D
Sbjct: 131 FKLIILDEADAMTNVAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPID 190
Query: 432 SSLIMSRLD 440
S I RL+
Sbjct: 191 ISAIKDRLN 199
Score = 264 (98.0 bits), Expect = 5.8e-29, Sum P(2) = 5.8e-29
Identities = 51/93 (54%), Positives = 66/93 (70%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IEKFT N RFCI+ NY K+ PA+ SRCTRFRF P+D S I RL+ VI +E VN++P+
Sbjct: 154 IEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDRLNTVIIKENVNISPEA 213
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNED 93
A++ LS+GDMR+ LN+LQS A DE E+
Sbjct: 214 IDALLKLSNGDMRRALNVLQSCKAALGDEEKEE 246
Score = 229 (85.7 bits), Expect = 5.0e-31, Sum P(3) = 5.0e-31
Identities = 61/136 (44%), Positives = 82/136 (60%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
L SRVEKYRP +L+E+ Q+I+ T+ V+ K+ + + +GT + + AL
Sbjct: 22 LFSRVEKYRPDSLEEVKGQQEIVDTVR----KFVETG-KLPHLLFYGPSGTGKTSTIIAL 76
Query: 159 IAAFNSARD-KLEVLELNASDDRGIGIVRDQIFQFASTK---------TMHKSSYKLIIL 208
A + K +LELNASDDRGI +VR+QI FAST+ T + +KLIIL
Sbjct: 77 AKEIYGATNYKNMILELNASDDRGIDVVRNQIKNFASTRQIFTKNTSQTASNNQFKLIIL 136
Query: 209 DEADAMTNDAQNALRR 224
DEADAMTN AQN+LRR
Sbjct: 137 DEADAMTNVAQNSLRR 152
Score = 113 (44.8 bits), Expect = 5.0e-31, Sum P(3) = 5.0e-31
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 222 LRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAATA----------HA-DEVNEDTVYNS 270
++ + ++P+ A++ LS+GDMR+ LN+LQS A HA DE++ D +Y+
Sbjct: 203 IKENVNISPEAIDALLKLSNGDMRRALNVLQSCKAALGDEEKEEDGHANDEIDVDMIYDC 262
Query: 271 VGYPTKTEITNILRWLLNESMDLCY-KINRF 300
VG P ++ L +L + Y +N++
Sbjct: 263 VGAPHPQDVETCLDSILKDDWTTAYLTLNKY 293
Score = 95 (38.5 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
GLAL D++T +++ ++ ++++ +SDIEY ++ G ++KIQ SA+I A
Sbjct: 298 GLALIDLITGFIEILNNYKLKPKTRLEILKGLSDIEYGISKGGNDKIQTSAIIGVIKDAM 357
Query: 524 D 524
+
Sbjct: 358 E 358
Score = 80 (33.2 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
Identities = 20/84 (23%), Positives = 45/84 (53%)
Query: 88 DEVNEDTIFTLLVSRVEKYRP----STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEY 143
D + +D T ++ + KY+ + +D + +I++ ++ ++++ +SDIEY
Sbjct: 276 DSILKDDWTTAYLT-LNKYKTIKGLALIDLITGFIEILNNYKLKPKTRLEILKGLSDIEY 334
Query: 144 RLAAGTSEKIQLSALIAAFNSARD 167
++ G ++KIQ SA+I A +
Sbjct: 335 GISKGGNDKIQTSAIIGVIKDAME 358
>GENEDB_PFALCIPARUM|PF14_0601 [details] [associations]
symbol:PF14_0601 "replication factor C3"
species:5833 "Plasmodium falciparum" [GO:0005663 "DNA replication
factor C complex" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 442 (160.7 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
Identities = 90/165 (54%), Positives = 119/165 (72%)
Query: 281 NILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMV 340
N+L +++ + I RF+ + ELPHLL +GPPGTGKT+TILA ++LY + ++ V
Sbjct: 22 NVLNDIISHEQVIS-TIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGDKR-SSFV 79
Query: 341 LELNASDDRGIGIVRDQIFQFASTK----TMHKSSYKLIILDEADAMTNDAQNALRRIIE 396
LELNASDDRGI ++RDQI FA +K T K++ KLIILDEAD MT AQNA+RRI+E
Sbjct: 80 LELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNAMRRIME 139
Query: 397 KFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSR-LD 440
+ NVRFC++CNY++KI PAIQSRCT FRF PL + ++ LD
Sbjct: 140 NYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALD 184
Score = 231 (86.4 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 44/100 (44%), Positives = 67/100 (67%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + NVRFC++CNY++KITPAIQSRCT FRF PL + ++ + + E VN+T G
Sbjct: 138 MENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVNLTEGG 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEV-NEDTIFTLL 99
++I + GDMR++LN LQ + +H + V +E+ I + L
Sbjct: 198 IDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTL 237
Score = 225 (84.3 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 64/161 (39%), Positives = 89/161 (55%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+ L++++SH+ +ISTI+ + + L L+L GT + + A+
Sbjct: 16 VEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPP-------GTGKTSTILAVCK 68
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK----TMHKSSYKLIILDEADAMTN 216
+ VLELNASDDRGI ++RDQI FA +K T K++ KLIILDEAD MT
Sbjct: 69 ELYGDKRSSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTY 128
Query: 217 DAQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAATA 257
AQNA+RR + K L + K+ +QS TA
Sbjct: 129 PAQNAMRRIMENY--AKNVRFCLLCNYVNKITPAIQSRCTA 167
Score = 98 (39.6 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 109 STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDK 168
ST D ++ + + T + P+S L+ +IE R ++G SE+I LSALI+AF R +
Sbjct: 274 STKDIMMCLYESVLTYDFPDSAFCLLLKNFGEIEERCSSGASEQITLSALISAFVEFRTE 333
Query: 169 LEVLELNASD 178
L L+ + S+
Sbjct: 334 LFKLKYDMSN 343
Score = 92 (37.4 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 214 MTNDAQN-ALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEV-NEDTVYNSV 271
M N A + A + +T G ++I + GDMR++LN LQ + +H + V +E+ + +++
Sbjct: 178 MKNKALDIAKSENVNLTEGGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTL 237
Query: 272 GYPTKTEITNILRWLLNESMDLCYK 296
P +E IL + S+ Y+
Sbjct: 238 DIPLPSETKKILEYFTKGSIKESYE 262
Score = 86 (35.3 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
G + DI+ + V + P+S L+ +IE R ++G SE+I LSALI+AF R
Sbjct: 272 GYSTKDIMMCLYESVLTYDFPDSAFCLLLKNFGEIEERCSSGASEQITLSALISAFVEFR 331
Query: 524 DKL 526
+L
Sbjct: 332 TEL 334
>UNIPROTKB|Q8IKK4 [details] [associations]
symbol:PF14_0601 "Replication factor C3" species:36329
"Plasmodium falciparum 3D7" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 442 (160.7 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
Identities = 90/165 (54%), Positives = 119/165 (72%)
Query: 281 NILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMV 340
N+L +++ + I RF+ + ELPHLL +GPPGTGKT+TILA ++LY + ++ V
Sbjct: 22 NVLNDIISHEQVIS-TIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGDKR-SSFV 79
Query: 341 LELNASDDRGIGIVRDQIFQFASTK----TMHKSSYKLIILDEADAMTNDAQNALRRIIE 396
LELNASDDRGI ++RDQI FA +K T K++ KLIILDEAD MT AQNA+RRI+E
Sbjct: 80 LELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNAMRRIME 139
Query: 397 KFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSR-LD 440
+ NVRFC++CNY++KI PAIQSRCT FRF PL + ++ LD
Sbjct: 140 NYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALD 184
Score = 231 (86.4 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 44/100 (44%), Positives = 67/100 (67%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + NVRFC++CNY++KITPAIQSRCT FRF PL + ++ + + E VN+T G
Sbjct: 138 MENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVNLTEGG 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEV-NEDTIFTLL 99
++I + GDMR++LN LQ + +H + V +E+ I + L
Sbjct: 198 IDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTL 237
Score = 225 (84.3 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 64/161 (39%), Positives = 89/161 (55%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP+ L++++SH+ +ISTI+ + + L L+L GT + + A+
Sbjct: 16 VEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPP-------GTGKTSTILAVCK 68
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK----TMHKSSYKLIILDEADAMTN 216
+ VLELNASDDRGI ++RDQI FA +K T K++ KLIILDEAD MT
Sbjct: 69 ELYGDKRSSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTY 128
Query: 217 DAQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAATA 257
AQNA+RR + K L + K+ +QS TA
Sbjct: 129 PAQNAMRRIMENY--AKNVRFCLLCNYVNKITPAIQSRCTA 167
Score = 98 (39.6 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 109 STLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDK 168
ST D ++ + + T + P+S L+ +IE R ++G SE+I LSALI+AF R +
Sbjct: 274 STKDIMMCLYESVLTYDFPDSAFCLLLKNFGEIEERCSSGASEQITLSALISAFVEFRTE 333
Query: 169 LEVLELNASD 178
L L+ + S+
Sbjct: 334 LFKLKYDMSN 343
Score = 92 (37.4 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 214 MTNDAQN-ALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEV-NEDTVYNSV 271
M N A + A + +T G ++I + GDMR++LN LQ + +H + V +E+ + +++
Sbjct: 178 MKNKALDIAKSENVNLTEGGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTL 237
Query: 272 GYPTKTEITNILRWLLNESMDLCYK 296
P +E IL + S+ Y+
Sbjct: 238 DIPLPSETKKILEYFTKGSIKESYE 262
Score = 86 (35.3 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
G + DI+ + V + P+S L+ +IE R ++G SE+I LSALI+AF R
Sbjct: 272 GYSTKDIMMCLYESVLTYDFPDSAFCLLLKNFGEIEERCSSGASEQITLSALISAFVEFR 331
Query: 524 DKL 526
+L
Sbjct: 332 TEL 334
>ASPGD|ASPL0000039105 [details] [associations]
symbol:AN2969 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IEA] [GO:0006272 "leading strand
elongation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0031389
"Rad17 RFC-like complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:BN001306 GO:GO:0017111 SUPFAM:SSF48019 Pfam:PF08542
OMA:QQLSQNC EnsemblFungi:CADANIAT00010111 Uniprot:C8VJ05
Length = 387
Score = 387 (141.3 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 76/156 (48%), Positives = 109/156 (69%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ R + + LPH+LFYGPPGTGKT+TILA A+ L+ A + + +LELNASD+RGIGIVR+
Sbjct: 58 LQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVRE 117
Query: 357 QIFQFASTKTMHKSS-------------YKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
++ FA + H + +K+IILDEAD+MT DAQ+ALRR +E+++ R
Sbjct: 118 KVKGFARVQLSHPTGLDAEYFEKYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITR 177
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
FC++CNY+++I + SRC++FRF PLD+S RL
Sbjct: 178 FCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRL 213
Score = 188 (71.2 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 56/141 (39%), Positives = 81/141 (57%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
VEKYRP TLD+ V+ QD T ++ + L+ S++ + L GT + + AL
Sbjct: 37 VEKYRPKTLDD-VAAQD--HTTKV-----LQRTLQASNLPHMLFYGPPGTGKTSTILALA 88
Query: 160 AA-FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-------------YKL 205
+ F A + +LELNASD+RGIGIVR+++ FA + H + +K+
Sbjct: 89 KSLFGPALYRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPPFKI 148
Query: 206 IILDEADAMTNDAQNALRRKL 226
IILDEAD+MT DAQ+ALRR +
Sbjct: 149 IILDEADSMTQDAQSALRRTM 169
Score = 181 (68.8 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 33/83 (39%), Positives = 55/83 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+++ RFC++CNY+++I + SRC++FRF PLD+S RL + + EK+++
Sbjct: 169 MEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRLAQIAQLEKLSLENGV 228
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+I SDGD+R+ + LQSAA
Sbjct: 229 VDKLISCSDGDLRRAITYLQSAA 251
Score = 52 (23.4 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 464 GLALTDILTEI-SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
G + T IL ++ +V+ IP+ +VL S+++ RL G E + +
Sbjct: 324 GWSATQILLQLYRRMVYNDAIPDIQKNKIVLVFSEMDKRLVDGADEHLSI 373
Score = 41 (19.5 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 126 IPESMLVDLVLKMSDIEYRLAAGTSEKIQL 155
IP+ +VL S+++ RL G E + +
Sbjct: 344 IPDIQKNKIVLVFSEMDKRLVDGADEHLSI 373
>POMBASE|SPAC23D3.02 [details] [associations]
symbol:rfc2 "DNA replication factor C complex subunit
Rfc2" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0031389
"Rad17 RFC-like complex" evidence=TAS] [GO:0031390 "Ctf18 RFC-like
complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like complex"
evidence=IDA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IMP] [GO:0043596 "nuclear replication fork" evidence=IC]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC23D3.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0000790 GO:GO:0006270 GO:GO:0043596
GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0033314 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 PIR:T38278 RefSeq:NP_594540.1
ProteinModelPortal:Q09843 SMR:Q09843 STRING:Q09843
EnsemblFungi:SPAC23D3.02.1 GeneID:2541908 KEGG:spo:SPAC23D3.02
HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4ZCXDF NextBio:20802995
Uniprot:Q09843
Length = 340
Score = 382 (139.5 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 73/144 (50%), Positives = 103/144 (71%)
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAS 363
N LPH+LFYG PGTGKT+TILA +R+L+ + VLELNASD+RGI I+R+++ FA
Sbjct: 50 NNLPHMLFYGSPGTGKTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAK 109
Query: 364 TKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
T +K +K+IILDEAD+MT DAQ ALRR +E + RFC+ICNY+++I
Sbjct: 110 TTVTNKVDGYPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDP 169
Query: 418 IQSRCTRFRFGPLDSSLIMSRLDY 441
+ SRC+++RF PLD+ ++ RL++
Sbjct: 170 LSSRCSKYRFKPLDNENMVKRLEF 193
Score = 208 (78.3 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 56/189 (29%), Positives = 100/189 (52%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RFC+ICNY+++I + SRC+++RF PLD+ ++ RL+++ + V++ P
Sbjct: 147 MESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIAADQAVSMEPGV 206
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAH-ADEVNEDTIFTLLVSRVEKYRPSTLDEL----V 115
A+++ S GDMRK + LQSAA H + ++ L + S LD V
Sbjct: 207 VNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEELAGAVPYNIIRSLLDTAYTKNV 266
Query: 116 SHQDIISTIEIPESMLVDLVL-KMSDI---EYRLAAGTSEKI--QLSALIAAFNSARDK- 168
S+ + +S E ++L ++ D+ E L++ KI +LS + N D+
Sbjct: 267 SNIETLSRDVAAEGYSTGIILSQLHDVLLKEETLSSPVKYKIFMKLSEVDKRLNDGADET 326
Query: 169 LEVLELNAS 177
L++L+L +S
Sbjct: 327 LQLLDLLSS 335
Score = 196 (74.1 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 55/131 (41%), Positives = 77/131 (58%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VE YRP TLD+ VS Q+ ST+++ + L L + + + + GT + + AL
Sbjct: 22 VELYRPKTLDQ-VSSQE--STVQVLKKTL--LSNNLPHMLFYGSPGTGKTSTILALSREL 76
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS------YKLIILDEADAMT 215
F K VLELNASD+RGI I+R+++ FA T +K +K+IILDEAD+MT
Sbjct: 77 FGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTNKVDGYPCPPFKIIILDEADSMT 136
Query: 216 NDAQNALRRKL 226
DAQ ALRR +
Sbjct: 137 QDAQAALRRTM 147
Score = 53 (23.7 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 22/95 (23%), Positives = 42/95 (44%)
Query: 428 GPLDSSLIMSRLD--YDDISFFNXXXXXXXXXXXXXXXGLALTDILTEISLLVHRLEIPE 485
G + ++I S LD Y + N G+ L+ L ++ L L P
Sbjct: 247 GAVPYNIIRSLLDTAYTK-NVSNIETLSRDVAAEGYSTGIILSQ-LHDVLLKEETLSSP- 303
Query: 486 SMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 520
+ + +K+S+++ RL G E +QL L+++ +
Sbjct: 304 -VKYKIFMKLSEVDKRLNDGADETLQLLDLLSSIS 337
>ZFIN|ZDB-GENE-040824-3 [details] [associations]
symbol:rfc4 "replication factor C (activator 1) 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0060041 "retina development in
camera-type eye" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-040824-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0060041 GO:GO:0017111 KO:K10755
eggNOG:COG0470 SUPFAM:SSF48019 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4Q58PN
EMBL:AY648805 IPI:IPI00506924 RefSeq:NP_999902.2 UniGene:Dr.77554
ProteinModelPortal:Q6DRF4 STRING:Q6DRF4 PRIDE:Q6DRF4 GeneID:406435
KEGG:dre:406435 NextBio:20818031 ArrayExpress:Q6DRF4 Bgee:Q6DRF4
Uniprot:Q6DRF4
Length = 358
Score = 364 (133.2 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 75/150 (50%), Positives = 107/150 (71%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+LY + VLELNASD+RGI +VR+
Sbjct: 57 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPDLYRQRVLELNASDERGIQVVRE 116
Query: 357 QIFQFAS-----TKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ +FA T+ K+ +K+IILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 117 KVKRFAQLTVAGTRPDGKTCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICN 176
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC++FRF PL + + R+
Sbjct: 177 YVSRIIEPLTSRCSKFRFKPLANDVQQERI 206
Score = 202 (76.2 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 60/196 (30%), Positives = 99/196 (50%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + + R+ + +E + T +G
Sbjct: 162 MEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLANDVQQERILEICRKENLKYTTEG 221
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTIFTLLVSRVEKYRPSTLDELVSHQD 119
A++ +S+GD+RK + LQS A +++ E+ E TI ++ V P + L+ H
Sbjct: 222 VDALVRVSEGDLRKAITFLQSGARLNSEREITEQTIIE--IAGVVP--PKVIQSLL-HIC 276
Query: 120 IISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL-SALIAAFNSARDKLEVLELNASD 178
T E E + D++ D Y A T+ QL +I S + K + E A
Sbjct: 277 YKGTFEKLEVAVKDMI----DQGY---AATNLLNQLHDVIIEEQLSDKQKSVITEKMAEV 329
Query: 179 DRGIGIVRDQIFQFAS 194
D+ + D+ Q S
Sbjct: 330 DKCLADGADEYLQLLS 345
Score = 166 (63.5 bits), Expect = 1.4e-16, Sum P(3) = 1.4e-16
Identities = 50/135 (37%), Positives = 80/135 (59%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP +DE+ +++++ ++ +S L+ +D+ L G + S ++AA
Sbjct: 36 VEKYRPKCVDEVAFQEEVVAVLK--KS------LEGADLPNLLFYGPPGTGKTSTILAAA 87
Query: 163 NS--ARD--KLEVLELNASDDRGIGIVRDQIFQFAS-----TKTMHKSS--YKLIILDEA 211
D + VLELNASD+RGI +VR+++ +FA T+ K+ +K+IILDEA
Sbjct: 88 RELYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCPPFKIIILDEA 147
Query: 212 DAMTNDAQNALRRKL 226
D+MT+ AQ ALRR +
Sbjct: 148 DSMTSAAQAALRRTM 162
Score = 91 (37.1 bits), Expect = 1.4e-16, Sum P(3) = 1.4e-16
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 223 RRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTVYNSVGY-PTKTEIT 280
+ L T +G A++ +S+GD+RK + LQS A +++ E+ E T+ G P K
Sbjct: 212 KENLKYTTEGVDALVRVSEGDLRKAITFLQSGARLNSEREITEQTIIEIAGVVPPK---- 267
Query: 281 NILRWLLNESMDLCYK 296
+++ LL+ +CYK
Sbjct: 268 -VIQSLLH----ICYK 278
Score = 56 (24.8 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
G A T++L ++ ++ ++ + + KM++++ LA G E +QL +L
Sbjct: 295 GYAATNLLNQLHDVIIEEQLSDKQKSVITEKMAEVDKCLADGADEYLQLLSL 346
>DICTYBASE|DDB_G0286027 [details] [associations]
symbol:rfc4 "replication factor C subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0286027 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000085 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 RefSeq:XP_637900.1 HSSP:O28219
ProteinModelPortal:Q54MD4 STRING:Q54MD4 EnsemblProtists:DDB0232233
GeneID:8625410 KEGG:ddi:DDB_G0286027 OMA:SANDIVQ
ProtClustDB:CLSZ2430137 Uniprot:Q54MD4
Length = 347
Score = 376 (137.4 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 80/158 (50%), Positives = 103/158 (65%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D+ + + ++ LPHLLFYGPPGTGKT+TILA A +Y VLELNASD+RGI
Sbjct: 29 DVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGPELMKQRVLELNASDERGI 88
Query: 352 GIVRDQIFQFAS---TKTMHKSS-----YKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+VR +I FA KT +S +KLIILDEAD+MT DAQ ALRR IE + R
Sbjct: 89 EVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEADSMTTDAQAALRRTIETTSKTTR 148
Query: 404 FCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
FC++CNY+S+I + SRC +FRF PLD+ + RL +
Sbjct: 149 FCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKF 186
Score = 212 (79.7 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 55/165 (33%), Positives = 90/165 (54%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE + RFC++CNY+S+I + SRC +FRF PLD+ + RL ++ +QE +
Sbjct: 140 IETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFISQQEGIKCEESV 199
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL-------LVSR-VEKYRPSTLD 112
+AI +S+GDMRK + LQSA A++++ED I+ + L+ + V+ + ++ D
Sbjct: 200 YQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLIKQLVDCCKKNSFD 259
Query: 113 ELVSH-QDIIST-IEIPE--SMLVDLVLKMSDIEYRLAAGTSEKI 153
L S Q II+ + + S L D VL D+ + + KI
Sbjct: 260 RLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKI 304
Score = 182 (69.1 bits), Expect = 6.4e-17, Sum P(3) = 6.4e-17
Identities = 53/136 (38%), Positives = 77/136 (56%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL-IAA 161
V KYRP T+D++ +D+IS ++ +S+ + + + GT + + A+ +
Sbjct: 13 VAKYRPKTVDDVSYQEDVISALK--KSLNTG---NLPHLLFYGPPGTGKTSTILAIAMDI 67
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS---TKTMHKSS-----YKLIILDEADA 213
+ K VLELNASD+RGI +VR +I FA KT +S +KLIILDEAD+
Sbjct: 68 YGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEADS 127
Query: 214 MTNDAQNALRRKLPVT 229
MT DAQ ALRR + T
Sbjct: 128 MTTDAQAALRRTIETT 143
Score = 89 (36.4 bits), Expect = 6.4e-17, Sum P(3) = 6.4e-17
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 234 KAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVG 272
+AI +S+GDMRK + LQSA A++++ED +YN G
Sbjct: 201 QAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAG 239
Score = 41 (19.5 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 8/50 (16%), Positives = 28/50 (56%)
Query: 464 GLALTDILTEI-SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL 512
G ++ +++++ ++ ++ +S + +K+ +++ L G+ E +QL
Sbjct: 272 GYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGNVDRNLIDGSEEFLQL 321
>UNIPROTKB|P35249 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0048015 "phosphatidylinositol-mediated
signaling" evidence=NAS] [GO:0006260 "DNA replication"
evidence=NAS;TAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677 EMBL:CH471052
GO:GO:0017111 GO:GO:0048015 GO:GO:0000084 KO:K10755 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 EMBL:M87339 EMBL:AF538718 EMBL:BT006987
EMBL:CR536561 EMBL:BC017452 EMBL:BC024022 IPI:IPI00017381
PIR:A45253 RefSeq:NP_002907.1 RefSeq:NP_853551.1 UniGene:Hs.732098
ProteinModelPortal:P35249 SMR:P35249 DIP:DIP-24267N IntAct:P35249
MINT:MINT-1485723 STRING:P35249 PhosphoSite:P35249 DMDM:1703052
PaxDb:P35249 PeptideAtlas:P35249 PRIDE:P35249 DNASU:5984
Ensembl:ENST00000296273 Ensembl:ENST00000392481 GeneID:5984
KEGG:hsa:5984 UCSC:uc003fqz.3 GeneCards:GC03M186507 HGNC:HGNC:9972
HPA:CAB004557 MIM:102577 neXtProt:NX_P35249 PharmGKB:PA34341
InParanoid:P35249 OMA:QQLSQNC PhylomeDB:P35249 ChiTaRS:RFC4
GenomeRNAi:5984 NextBio:23297 ArrayExpress:P35249 Bgee:P35249
CleanEx:HS_RFC4 Genevestigator:P35249 GermOnline:ENSG00000163918
Uniprot:P35249
Length = 363
Score = 366 (133.9 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 75/150 (50%), Positives = 105/150 (70%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFAS-TKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA T + +S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC++FRF PL + RL
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRL 211
Score = 188 (71.2 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 36/96 (37%), Positives = 58/96 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA E+ E I
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVI 262
Score = 174 (66.3 bits), Expect = 4.9e-15, Sum P(3) = 4.9e-15
Identities = 50/135 (37%), Positives = 80/135 (59%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +DE+ +++++ ++ +S L+ +D+ L G + S ++AA
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLK--KS------LEGADLPNLLFYGPPGTGKTSTILAAA 92
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS-TKTMHKSS------YKLIILDEA 211
F +L VLELNASD+RGI +VR+++ FA T + +S +K++ILDEA
Sbjct: 93 RELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEA 152
Query: 212 DAMTNDAQNALRRKL 226
D+MT+ AQ ALRR +
Sbjct: 153 DSMTSAAQAALRRTM 167
Score = 73 (30.8 bits), Expect = 4.9e-15, Sum P(3) = 4.9e-15
Identities = 21/85 (24%), Positives = 39/85 (45%)
Query: 221 ALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVGYPTKTEI 279
A + + ++ +G ++ +S+GD+RK + LQSA E+ E + + G +I
Sbjct: 215 AKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKI 274
Query: 280 TNILRWLLNESMD-LCYKINRFIDE 303
+ + S D L + IDE
Sbjct: 275 DGVFAACQSGSFDKLEAVVKDLIDE 299
Score = 50 (22.7 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
G A T ++ ++ +V + + + K+++++ LA G E +QL +L A
Sbjct: 300 GHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCA 353
Score = 46 (21.3 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 113 ELVSH-QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+LV+ D++ + + + K+++++ LA G E +QL +L A
Sbjct: 305 QLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCA 353
>UNIPROTKB|C9JZI1 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 EMBL:AC112907 Pfam:PF08542 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925945
ProteinModelPortal:C9JZI1 SMR:C9JZI1 STRING:C9JZI1
Ensembl:ENST00000433496 ArrayExpress:C9JZI1 Bgee:C9JZI1
Uniprot:C9JZI1
Length = 336
Score = 366 (133.9 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 75/150 (50%), Positives = 105/150 (70%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFAS-TKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA T + +S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC++FRF PL + RL
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRL 211
Score = 224 (83.9 bits), Expect = 2.8e-16, P = 2.8e-16
Identities = 49/162 (30%), Positives = 90/162 (55%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH-Q 118
++ +S+GD+RK + LQSA E+ E I + +++ +T +LV+
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGDLIDEGHAAT--QLVNQLH 284
Query: 119 DIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
D++ + + + K+++++ LA G E +QL +L A
Sbjct: 285 DVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCA 326
Score = 174 (66.3 bits), Expect = 7.9e-15, Sum P(3) = 7.9e-15
Identities = 50/135 (37%), Positives = 80/135 (59%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +DE+ +++++ ++ +S L+ +D+ L G + S ++AA
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLK--KS------LEGADLPNLLFYGPPGTGKTSTILAAA 92
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS-TKTMHKSS------YKLIILDEA 211
F +L VLELNASD+RGI +VR+++ FA T + +S +K++ILDEA
Sbjct: 93 RELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEA 152
Query: 212 DAMTNDAQNALRRKL 226
D+MT+ AQ ALRR +
Sbjct: 153 DSMTSAAQAALRRTM 167
Score = 68 (29.0 bits), Expect = 7.9e-15, Sum P(3) = 7.9e-15
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 221 ALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVG 272
A + + ++ +G ++ +S+GD+RK + LQSA E+ E + + G
Sbjct: 215 AKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAG 267
Score = 50 (22.7 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
G A T ++ ++ +V + + + K+++++ LA G E +QL +L A
Sbjct: 273 GHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCA 326
>UNIPROTKB|F1NEW1 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:AADN02020726 IPI:IPI00819051 PRIDE:F1NEW1
Ensembl:ENSGALT00000039711 ArrayExpress:F1NEW1 Uniprot:F1NEW1
Length = 362
Score = 363 (132.8 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 73/150 (48%), Positives = 105/150 (70%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI ++R+
Sbjct: 60 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRQRVLELNASDERGIQVIRE 119
Query: 357 QIFQFAS-TKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA T + ++ +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 120 KVKAFAQLTASGSRADGKVCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 179
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC++FRF PL + RL
Sbjct: 180 YISRIIEPLTSRCSKFRFKPLSDKIQQQRL 209
Score = 202 (76.2 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL V E+E V +T +
Sbjct: 165 MEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKENVKITSEA 224
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTIFTLLVSRVEKYRPSTLDELVS 116
++ +SDGD+RK + LQSA E+ E T+ T + + + T+D L+S
Sbjct: 225 VSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTV-TEIAGVIPR---ETIDGLLS 277
Score = 163 (62.4 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 47/135 (34%), Positives = 78/135 (57%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +DE+ ++++ ++ +S L+ +D+ L G + S ++AA
Sbjct: 39 VEKYRPKNVDEVAFQDEVVAVLK--KS------LEGADLPNLLFYGPPGTGKTSTILAAA 90
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS-TKTMHKSS------YKLIILDEA 211
F + VLELNASD+RGI ++R+++ FA T + ++ +K++ILDEA
Sbjct: 91 RELFGPELFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCPPFKIVILDEA 150
Query: 212 DAMTNDAQNALRRKL 226
D+MT+ AQ ALRR +
Sbjct: 151 DSMTSAAQAALRRTM 165
Score = 77 (32.2 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 223 RRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTVYNSVGYPTKTEITN 281
+ + +T + ++ +SDGD+RK + LQSA E+ E TV G + I
Sbjct: 215 KENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIAGVIPRETIDG 274
Query: 282 IL 283
+L
Sbjct: 275 LL 276
Score = 52 (23.4 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 13/55 (23%), Positives = 30/55 (54%)
Query: 464 GLALTDILTEI-SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
G A+ ++ ++ ++V + + +V K+++++ LA G E +QL +L A
Sbjct: 298 GYAVAQLVNQLHDIVVESEDFSDKQKSIIVEKLAEVDKCLADGADEYLQLISLCA 352
>UNIPROTKB|F1NIY0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917
EMBL:AADN02020726 IPI:IPI00574772 Ensembl:ENSGALT00000014162
ArrayExpress:F1NIY0 Uniprot:F1NIY0
Length = 359
Score = 363 (132.8 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 73/150 (48%), Positives = 105/150 (70%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI ++R+
Sbjct: 60 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRQRVLELNASDERGIQVIRE 119
Query: 357 QIFQFAS-TKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA T + ++ +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 120 KVKAFAQLTASGSRADGKVCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 179
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC++FRF PL + RL
Sbjct: 180 YISRIIEPLTSRCSKFRFKPLSDKIQQQRL 209
Score = 202 (76.2 bits), Expect = 8.6e-15, Sum P(2) = 8.6e-15
Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL V E+E V +T +
Sbjct: 165 MEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKENVKITSEA 224
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTIFTLLVSRVEKYRPSTLDELVS 116
++ +SDGD+RK + LQSA E+ E T+ T + + + T+D L+S
Sbjct: 225 VSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTV-TEIAGVIPR---ETIDGLLS 277
Score = 163 (62.4 bits), Expect = 2.3e-14, Sum P(3) = 2.3e-14
Identities = 47/135 (34%), Positives = 78/135 (57%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +DE+ ++++ ++ +S L+ +D+ L G + S ++AA
Sbjct: 39 VEKYRPKNVDEVAFQDEVVAVLK--KS------LEGADLPNLLFYGPPGTGKTSTILAAA 90
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS-TKTMHKSS------YKLIILDEA 211
F + VLELNASD+RGI ++R+++ FA T + ++ +K++ILDEA
Sbjct: 91 RELFGPELFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCPPFKIVILDEA 150
Query: 212 DAMTNDAQNALRRKL 226
D+MT+ AQ ALRR +
Sbjct: 151 DSMTSAAQAALRRTM 165
Score = 77 (32.2 bits), Expect = 2.3e-14, Sum P(3) = 2.3e-14
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 223 RRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHAD-EVNEDTVYNSVGYPTKTEITN 281
+ + +T + ++ +SDGD+RK + LQSA E+ E TV G + I
Sbjct: 215 KENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIAGVIPRETIDG 274
Query: 282 IL 283
+L
Sbjct: 275 LL 276
Score = 52 (23.4 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 13/55 (23%), Positives = 30/55 (54%)
Query: 464 GLALTDILTEI-SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
G A+ ++ ++ ++V + + +V K+++++ LA G E +QL +L A
Sbjct: 298 GYAVAQLVNQLHDIVVESEDFSDKQKSIIVEKLAEVDKCLADGADEYLQLISLCA 352
>MGI|MGI:2146571 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:2146571
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 EMBL:AK146954
EMBL:BC003335 IPI:IPI00319874 RefSeq:NP_663455.1 UniGene:Mm.386835
ProteinModelPortal:Q99J62 SMR:Q99J62 IntAct:Q99J62 STRING:Q99J62
PhosphoSite:Q99J62 PaxDb:Q99J62 PRIDE:Q99J62
Ensembl:ENSMUST00000023598 GeneID:106344 KEGG:mmu:106344
UCSC:uc007yth.1 OrthoDB:EOG4Q58PN NextBio:358165 Bgee:Q99J62
CleanEx:MM_RFC4 Genevestigator:Q99J62 GermOnline:ENSMUSG00000022881
Uniprot:Q99J62
Length = 364
Score = 366 (133.9 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 75/150 (50%), Positives = 105/150 (70%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFAS-TKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA T + +S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC++FRF PL + RL
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQERL 211
Score = 190 (71.9 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 38/96 (39%), Positives = 58/96 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + E+E V + +
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEE 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA EV+ED I
Sbjct: 227 IAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVI 262
Score = 171 (65.3 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 50/135 (37%), Positives = 78/135 (57%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +DE+ ++++ + +S L+ +D+ L G + S ++AA
Sbjct: 41 VEKYRPKCVDEVAFQDEVVAVLR--KS------LEGADLPNLLFYGPPGTGKTSTILAAA 92
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS-TKTMHKSS------YKLIILDEA 211
F +L VLELNASD+RGI +VR+++ FA T + +S +K++ILDEA
Sbjct: 93 RELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEA 152
Query: 212 DAMTNDAQNALRRKL 226
D+MT+ AQ ALRR +
Sbjct: 153 DSMTSAAQAALRRTM 167
Score = 75 (31.5 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 236 IIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMD-L 293
++ +S+GD+RK + LQSA EV+ED + + G I I + S D L
Sbjct: 230 LVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIFTACHSGSFDKL 289
Query: 294 CYKINRFIDE 303
+ IDE
Sbjct: 290 EAVVKNLIDE 299
Score = 48 (22.0 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 117 HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
H II + + + K+++++ LA G E +QL +L A
Sbjct: 311 HDAIIENENLSDKHKSIITEKLAEVDKCLADGADEHLQLMSLCA 354
Score = 47 (21.6 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 12/55 (21%), Positives = 28/55 (50%)
Query: 464 GLALTDILTEI-SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
G A T ++ ++ ++ + + + K+++++ LA G E +QL +L A
Sbjct: 300 GHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDKCLADGADEHLQLMSLCA 354
>RGD|1310142 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1310142
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755
eggNOG:COG0470 EMBL:CH473999 SUPFAM:SSF48019 HOVERGEN:HBG002053
Pfam:PF08542 CTD:5984 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 OrthoDB:EOG4Q58PN EMBL:BC168166
IPI:IPI00370513 RefSeq:NP_001099339.1 UniGene:Rn.17046
STRING:B4F778 Ensembl:ENSRNOT00000002487 GeneID:288003
KEGG:rno:288003 UCSC:RGD:1310142 OMA:INIPHED NextBio:627397
Genevestigator:B4F778 Uniprot:B4F778
Length = 364
Score = 366 (133.9 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 75/150 (50%), Positives = 105/150 (70%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFAS-TKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA T + +S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC++FRF PL + RL
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQKRL 211
Score = 189 (71.6 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 37/96 (38%), Positives = 58/96 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + E+E V + +
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQKRLLDIAEKENVKIGDEE 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA E++ED I
Sbjct: 227 IAYLVRISEGDLRKAITFLQSATRLTGGKEISEDVI 262
Score = 174 (66.3 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 50/135 (37%), Positives = 80/135 (59%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +DE+ +++++ ++ +S L+ +D+ L G + S ++AA
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLK--KS------LEGADLPNLLFYGPPGTGKTSTILAAA 92
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS-TKTMHKSS------YKLIILDEA 211
F +L VLELNASD+RGI +VR+++ FA T + +S +K++ILDEA
Sbjct: 93 RELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEA 152
Query: 212 DAMTNDAQNALRRKL 226
D+MT+ AQ ALRR +
Sbjct: 153 DSMTSAAQAALRRTM 167
Score = 73 (30.8 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 236 IIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMD-L 293
++ +S+GD+RK + LQSA E++ED + + G I I+ + S D L
Sbjct: 230 LVRISEGDLRKAITFLQSATRLTGGKEISEDVITDIAGVIPAATIEGIVTACHSGSFDKL 289
Query: 294 CYKINRFIDE 303
+ IDE
Sbjct: 290 EAVLKNLIDE 299
Score = 54 (24.1 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 17/70 (24%), Positives = 36/70 (51%)
Query: 93 DTIFTLLVSRVEKYRPSTLDELVS--HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTS 150
D + +L + +++ +T +LV+ H II + + + K+++++ LA G
Sbjct: 287 DKLEAVLKNLIDEGHAAT--QLVNQLHDSIIEDENLSDKQKSIITEKLAEVDKCLADGAD 344
Query: 151 EKIQLSALIA 160
E +QL +L A
Sbjct: 345 EHLQLMSLCA 354
Score = 46 (21.3 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 12/55 (21%), Positives = 28/55 (50%)
Query: 464 GLALTDILTEI-SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
G A T ++ ++ ++ + + + K+++++ LA G E +QL +L A
Sbjct: 300 GHAATQLVNQLHDSIIEDENLSDKQKSIITEKLAEVDKCLADGADEHLQLMSLCA 354
>TAIR|locus:2015233 [details] [associations]
symbol:RFC2 "replication factor C 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 EMBL:AC010795 HOGENOM:HOG000224155 Pfam:PF08542
OMA:TMELYSN HSSP:Q8U4J3 EMBL:BT031353 IPI:IPI00535046 PIR:B96657
RefSeq:NP_176504.1 UniGene:At.36170 ProteinModelPortal:Q9CAM7
SMR:Q9CAM7 STRING:Q9CAM7 PaxDb:Q9CAM7 PRIDE:Q9CAM7
EnsemblPlants:AT1G63160.1 GeneID:842620 KEGG:ath:AT1G63160
TAIR:At1g63160 InParanoid:Q9CAM7 PhylomeDB:Q9CAM7
ProtClustDB:PLN03025 Genevestigator:Q9CAM7 Uniprot:Q9CAM7
Length = 333
Score = 328 (120.5 bits), Expect = 8.9e-35, Sum P(2) = 8.9e-35
Identities = 81/188 (43%), Positives = 112/188 (59%)
Query: 253 SAATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYKINRFIDENELPHLLFY 312
S++T+ D NE V P+K + +I+ NE D ++ + +P+L+
Sbjct: 4 SSSTSTGDGYNEPWVEKY--RPSK--VVDIVG---NE--DAVSRLQVIARDGNMPNLILS 54
Query: 313 GPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK-TMHKSS 371
GPPGTGKTT+ILA A +L + VLELNASDDRGI +VR++I FA K T+
Sbjct: 55 GPPGTGKTTSILALAHELLG-TNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGR 113
Query: 372 YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLD 431
+K++ILDEAD+MT+ AQ ALRR IE ++ + RF + CN +KI IQSRC RF L
Sbjct: 114 HKVVILDEADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLS 173
Query: 432 SSLIMSRL 439
I+ RL
Sbjct: 174 DQQILGRL 181
Score = 209 (78.6 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 55/154 (35%), Positives = 87/154 (56%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRPS + ++V ++D +S +++ + + +L+L GT + + AL
Sbjct: 18 VEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPP-------GTGKTTSILALAH 70
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
K VLELNASDDRGI +VR++I FA K T+ +K++ILDEAD+MT+ AQ
Sbjct: 71 ELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQ 130
Query: 220 NALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQS 253
ALRR + + + + L+ K++ +QS
Sbjct: 131 QALRRTIEIYSNSTR--FALACNTSAKIIEPIQS 162
Score = 181 (68.8 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 40/96 (41%), Positives = 57/96 (59%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ + RF + CN +KI IQSRC RF L I+ RL V+ EKV P+G
Sbjct: 137 IEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVVAAEKVPYVPEG 196
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF 96
+AII +DGDMR+ LN LQ+ + + VN++ +F
Sbjct: 197 LEAIIFTADGDMRQALNNLQATFSGFSF-VNQENVF 231
Score = 117 (46.2 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 225 KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILR 284
K+P P+G +AII +DGDMR+ LN LQ+ + + VN++ V+ P + NI+R
Sbjct: 189 KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSF-VNQENVFKVCDQPHPLHVKNIVR 247
Query: 285 WLLNESMDL-CYKINRFID 302
+L D+ C + + D
Sbjct: 248 NVLESKFDIACDGLKQLYD 266
Score = 71 (30.1 bits), Expect = 8.9e-35, Sum P(2) = 8.9e-35
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
G + TDI+T + ++ ++ E + ++ + + R+ G +QL L+A + R
Sbjct: 268 GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIVR 327
Query: 524 DKLEAP 529
+ +AP
Sbjct: 328 ETAKAP 333
Score = 44 (20.5 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 13/62 (20%), Positives = 28/62 (45%)
Query: 106 YRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 165
Y P+ D + + II ++ E + ++ + + R+ G +QL L+A +
Sbjct: 269 YSPT--DIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIV 326
Query: 166 RD 167
R+
Sbjct: 327 RE 328
>FB|FBgn0030871 [details] [associations]
symbol:CG8142 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0031122 "cytoplasmic microtubule organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0003677
GO:GO:0006260 EMBL:AE014298 GO:GO:0046331 GO:GO:0017111
GO:GO:0031122 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
GeneTree:ENSGT00550000074917 HSSP:Q8U4J3 EMBL:AY069598
RefSeq:NP_573245.1 UniGene:Dm.2050 SMR:Q9VX15 IntAct:Q9VX15
MINT:MINT-847740 STRING:Q9VX15 EnsemblMetazoa:FBtr0074472
GeneID:32763 KEGG:dme:Dmel_CG8142 UCSC:CG8142-RA
FlyBase:FBgn0030871 InParanoid:Q9VX15 OMA:VGQMMEQ OrthoDB:EOG4Q2BXJ
GenomeRNAi:32763 NextBio:780237 Uniprot:Q9VX15
Length = 353
Score = 352 (129.0 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 72/160 (45%), Positives = 108/160 (67%)
Query: 289 ESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDD 348
E ++ + + ++ +LP++L YGPPGTGKT+TILA +R+++ F +LELNASD+
Sbjct: 46 EQSEVVAVLRKCVEGGDLPNMLLYGPPGTGKTSTILAASRQIFGD-MFKDRILELNASDE 104
Query: 349 RGIGIVRDQIFQFA--STKTMHKSS-----YKLIILDEADAMTNDAQNALRRIIEKFTTN 401
RGI +VR +I F+ S ++ +K+IILDEAD+MT+ AQ+ALRR +EK + +
Sbjct: 105 RGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRS 164
Query: 402 VRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
RFC+ICNY+S+I I SRC++FRF L ++ RL Y
Sbjct: 165 TRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKY 204
Score = 195 (73.7 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 38/100 (38%), Positives = 59/100 (59%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + + RFC+ICNY+S+I I SRC++FRF L ++ RL Y+ E E V + D
Sbjct: 158 MEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKYICEMEGVKIEDDA 217
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADE--VNEDTIFTL 98
K+I+ +S GD+R+ + LQS E +N +F +
Sbjct: 218 YKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTADLFEM 257
Score = 162 (62.1 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 47/134 (35%), Positives = 74/134 (55%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP +D++V ++++ + ++ D+ L G + S ++AA
Sbjct: 33 VEKYRPRNVDDVVEQSEVVAVLR--------KCVEGGDLPNMLLYGPPGTGKTSTILAAS 84
Query: 163 NSA-RD--KLEVLELNASDDRGIGIVRDQIFQFA--STKTMHKSS-----YKLIILDEAD 212
D K +LELNASD+RGI +VR +I F+ S ++ +K+IILDEAD
Sbjct: 85 RQIFGDMFKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCPPFKIIILDEAD 144
Query: 213 AMTNDAQNALRRKL 226
+MT+ AQ+ALRR +
Sbjct: 145 SMTHAAQSALRRTM 158
Score = 57 (25.1 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 228 VTPDGKKAIIDLSDGDMRKVLNILQS 253
+ D K+I+ +S GD+R+ + LQS
Sbjct: 213 IEDDAYKSIVKISGGDLRRAITTLQS 238
Score = 41 (19.5 bits), Expect = 1.2e-34, Sum P(2) = 1.2e-34
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 474 ISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 515
+ +VH + + + K+ + +RL G SE +Q+ L
Sbjct: 303 VEFIVHHPGLNDPQKATICDKLGECCFRLQDGGSEYLQIMDL 344
>UNIPROTKB|F1SFI3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:CU633961 Ensembl:ENSSSCT00000012916 Uniprot:F1SFI3
Length = 366
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 93/232 (40%), Positives = 134/232 (57%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFAS-TKTMHKSS--------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII 407
++ FA T + +S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+I
Sbjct: 122 KVKNFAQLTVSGSRSEISGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLI 181
Query: 408 CNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL-DYDDISFFNXXXXXXXXXXXXXXXGL- 465
CNY+S+I + SRC++FRF PL + RL D D L
Sbjct: 182 CNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISDEGIAYLVKVSEGDLR 241
Query: 466 -ALTDILTEISLLVHRLEIPESMLVDL--VLKMSDIEYRLAA---GTSEKIQ 511
A+T L + L E+ E M+ D+ V+ I+ LAA G+ +K++
Sbjct: 242 KAIT-FLQSATRLTGGKEVTEKMITDIAGVVPTETIDGVLAACQSGSFDKLE 292
Score = 188 (71.2 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 37/96 (38%), Positives = 58/96 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V ++ +G
Sbjct: 169 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISDEG 228
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA EV E I
Sbjct: 229 IAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKMI 264
Score = 172 (65.6 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 56/158 (35%), Positives = 88/158 (55%)
Query: 82 AATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDI 141
AATA + N+ V VEKYRP +DE+ +++++ ++ +S L+ +D+
Sbjct: 23 AATARSSGENKKA---KPVPWVEKYRPKCVDEVAFQEEVVAVLK--KS------LEGADL 71
Query: 142 EYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS-TK 196
L G + S ++AA F +L VLELNASD+RGI +VR+++ FA T
Sbjct: 72 PNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV 131
Query: 197 TMHKSS--------YKLIILDEADAMTNDAQNALRRKL 226
+ +S +K++ILDEAD+MT+ AQ ALRR +
Sbjct: 132 SGSRSEISGKPCPPFKIVILDEADSMTSAAQAALRRTM 169
Score = 79 (32.9 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 223 RRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVGY-PTKTEIT 280
+ + ++ +G ++ +S+GD+RK + LQSA EV E + + G PT+T I
Sbjct: 219 KEHVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKMITDIAGVVPTET-ID 277
Query: 281 NILRWLLNESMD-LCYKINRFIDE 303
+L + S D L + IDE
Sbjct: 278 GVLAACQSGSFDKLEAVVKDLIDE 301
Score = 43 (20.2 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 464 GLALTDILTEI-SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
G A T + ++ ++V + + + K+++ + LA G E +QL +L A
Sbjct: 302 GHAATQFVNQLHDVVVENDNLSDKQKSVITEKLAEADKCLADGADEHLQLISLCA 356
Score = 42 (19.8 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 117 HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
H ++ + + + K+++ + LA G E +QL +L A
Sbjct: 313 HDVVVENDNLSDKQKSVITEKLAEADKCLADGADEHLQLISLCA 356
>UNIPROTKB|E2R2M6 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5984 OMA:ICFRGTF
GeneTree:ENSGT00550000074917 EMBL:AAEX03017297 RefSeq:XP_535837.1
Ensembl:ENSCAFT00000021708 GeneID:478667 KEGG:cfa:478667
NextBio:20853970 Uniprot:E2R2M6
Length = 363
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 92/230 (40%), Positives = 133/230 (57%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 61 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 120
Query: 357 QIFQFAS-TKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA T + +S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 121 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 180
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL-DYDDISFFNXXXXXXXXXXXXXXXGL--A 466
Y+S+I + SRC++FRF PL + RL D D L A
Sbjct: 181 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKVSNEGIAYLVKVSEGDLRKA 240
Query: 467 LTDILTEISLLVHRLEIPESMLVDL--VLKMSDIEYRLAA---GTSEKIQ 511
+T L + L EI E ++ D+ V+ I+ AA G+ +K++
Sbjct: 241 IT-FLQSATRLTGGKEITEKVITDIAGVIPAGTIDGIFAACQSGSFDKLE 289
Score = 188 (71.2 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 37/96 (38%), Positives = 58/96 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V V+ +G
Sbjct: 166 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKVSNEG 225
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + LQSA E+ E I
Sbjct: 226 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVI 261
Score = 179 (68.1 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 57/156 (36%), Positives = 89/156 (57%)
Query: 82 AATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDI 141
AATA + N+ T V VEKYRP +DE+ +++++ ++ +S L+ +D+
Sbjct: 22 AATAGSSGENKKT---KPVPWVEKYRPKCVDEVAFQEEVVAVLK--KS------LEGADL 70
Query: 142 EYRLAAGTSEKIQLSALIAA----FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS-TK 196
L G + S ++AA F +L VLELNASD+RGI +VR+++ FA T
Sbjct: 71 PNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV 130
Query: 197 TMHKSS------YKLIILDEADAMTNDAQNALRRKL 226
+ +S +K++ILDEAD+MT+ AQ ALRR +
Sbjct: 131 SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTM 166
Score = 68 (29.0 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 223 RRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVGYPTKTEITN 281
+ + V+ +G ++ +S+GD+RK + LQSA E+ E + + G I
Sbjct: 216 KEHVKVSNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAGTIDG 275
Query: 282 ILRWLLNESMD-LCYKINRFIDE 303
I + S D L + IDE
Sbjct: 276 IFAACQSGSFDKLEAVVKDLIDE 298
Score = 45 (20.9 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 113 ELVS--HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+LVS H ++ + + + K+++ + LA G E +QL +L A
Sbjct: 304 QLVSQFHDVVVENDNLSDKQKSIITEKLAEADKCLADGADEHLQLISLCA 353
Score = 44 (20.5 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 464 GLALTDILTEI-SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
G A T ++++ ++V + + + K+++ + LA G E +QL +L A
Sbjct: 299 GHAATQLVSQFHDVVVENDNLSDKQKSIITEKLAEADKCLADGADEHLQLISLCA 353
>UNIPROTKB|Q29RS9 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917
OMA:QQLSQNC EMBL:DAAA02001847 EMBL:DAAA02001846 EMBL:BC114041
IPI:IPI00728867 RefSeq:NP_001039359.1 UniGene:Bt.102331
STRING:Q29RS9 Ensembl:ENSBTAT00000045810 GeneID:504637
KEGG:bta:504637 NextBio:20866768 Uniprot:Q29RS9
Length = 337
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 92/239 (38%), Positives = 133/239 (55%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFAS-TKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA T + +S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL-DYDDISFFNXXXXXXXXXXXXXXXGL--A 466
Y+S+I + SRC++FRF PL + RL D D L A
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRKA 241
Query: 467 LTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDK 525
+T L + L E+ E ++ D+ D+ A T QL ++ ++ DK
Sbjct: 242 IT-FLQSATRLTGGKEVTEKVITDIA---GDLINEGHAATQLVNQLHDVVVENDNLSDK 296
Score = 223 (83.6 bits), Expect = 3.8e-16, P = 3.8e-16
Identities = 50/163 (30%), Positives = 89/163 (54%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL + ++E V ++ +G
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEG 226
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTIFTLLVSRVEKYRPSTLDELVS--H 117
++ +S+GD+RK + LQSA EV E I + + + +T +LV+ H
Sbjct: 227 IAYLVQVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGDLINEGHAAT--QLVNQLH 284
Query: 118 QDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
++ + + + K+++++ LA G E +QL +L A
Sbjct: 285 DVVVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCA 327
Score = 174 (66.3 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 50/135 (37%), Positives = 80/135 (59%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +DE+ +++++ ++ +S L+ +D+ L G + S ++AA
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLK--KS------LEGADLPNLLFYGPPGTGKTSTILAAA 92
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS-TKTMHKSS------YKLIILDEA 211
F +L VLELNASD+RGI +VR+++ FA T + +S +K++ILDEA
Sbjct: 93 RELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEA 152
Query: 212 DAMTNDAQNALRRKL 226
D+MT+ AQ ALRR +
Sbjct: 153 DSMTSAAQAALRRTM 167
Score = 67 (28.6 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 22/87 (25%), Positives = 41/87 (47%)
Query: 223 RRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVGY-----PTK 276
+ + ++ +G ++ +S+GD+RK + LQSA EV E + + G
Sbjct: 217 KEHVKISNEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGDLINEGHAA 276
Query: 277 TEITNILRWLLNESMDLCYKINRFIDE 303
T++ N L ++ E+ +L K I E
Sbjct: 277 TQLVNQLHDVVVENDNLSDKQKSIITE 303
Score = 49 (22.3 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 464 GLALTDILTEI-SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
G A T ++ ++ ++V + + + K+++++ LA G E +QL +L A
Sbjct: 273 GHAATQLVNQLHDVVVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCA 327
>GENEDB_PFALCIPARUM|PFB0840w [details] [associations]
symbol:PFB0840w "replication factor C, subunit
2" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 330 (121.2 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 70/155 (45%), Positives = 98/155 (63%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + +PHL+F+GPPGTGKT+ I A A +L+ K + VLELNASDDRGI +VR+
Sbjct: 28 LKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGKENISERVLELNASDDRGINVVRE 87
Query: 357 QIFQFA----STKTMHKS------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
+I + S +H S+KL++LDEAD MT DAQ+ALRRIIE ++ RF +
Sbjct: 88 KIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFIL 147
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ICNY+ KI I SRC+ +RF + ++ +L Y
Sbjct: 148 ICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLY 182
Score = 181 (68.8 bits), Expect = 4.1e-16, Sum P(3) = 4.1e-16
Identities = 53/137 (38%), Positives = 75/137 (54%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI-AA 161
VEKYRP LD++V HQ+ + + + E V M + + GT + ++AL
Sbjct: 7 VEKYRPKRLDDIV-HQNN-AVMMLKE---VVRTKNMPHLIFHGPPGTGKTSAINALAHEL 61
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFA----STKTMHKS------SYKLIILDEA 211
F VLELNASDDRGI +VR++I + S +H S+KL++LDEA
Sbjct: 62 FGKENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEA 121
Query: 212 DAMTNDAQNALRRKLPV 228
D MT DAQ+ALRR + +
Sbjct: 122 DMMTEDAQSALRRIIEI 138
Score = 156 (60.0 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 28/80 (35%), Positives = 52/80 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RF +ICNY+ KI+ I SRC+ +RF + ++ +L Y+ + E +++ D
Sbjct: 136 IEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYICQNENIDIVDDA 195
Query: 61 KKAIIDLSDGDMRKVLNILQ 80
+ II+ ++GD+R+ ++ILQ
Sbjct: 196 LEKIIETTEGDLRRAVSILQ 215
Score = 63 (27.2 bits), Expect = 4.1e-16, Sum P(3) = 4.1e-16
Identities = 13/58 (22%), Positives = 33/58 (56%)
Query: 226 LPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
+ + D + II+ ++GD+R+ ++ILQ + + ++ ++V + G P+ + I+
Sbjct: 189 IDIVDDALEKIIETTEGDLRRAVSILQLCSCINT-KITLNSVLDVSGLPSDNIVYKII 245
Score = 60 (26.2 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 121 ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNS 164
++ E +S+ ++L++S +YRL G ++ IQL + ++ +S
Sbjct: 282 VTNTEYEDSLKYQILLELSRHDYRLHCGATQYIQLLSFASSVHS 325
Score = 58 (25.5 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 478 VHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNS 521
V E +S+ ++L++S +YRL G ++ IQL + ++ +S
Sbjct: 282 VTNTEYEDSLKYQILLELSRHDYRLHCGATQYIQLLSFASSVHS 325
>UNIPROTKB|O96260 [details] [associations]
symbol:PFB0840w "Replication factor C, subunit 2"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 330 (121.2 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 70/155 (45%), Positives = 98/155 (63%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + +PHL+F+GPPGTGKT+ I A A +L+ K + VLELNASDDRGI +VR+
Sbjct: 28 LKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGKENISERVLELNASDDRGINVVRE 87
Query: 357 QIFQFA----STKTMHKS------SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
+I + S +H S+KL++LDEAD MT DAQ+ALRRIIE ++ RF +
Sbjct: 88 KIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADMMTEDAQSALRRIIEIYSNVTRFIL 147
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ICNY+ KI I SRC+ +RF + ++ +L Y
Sbjct: 148 ICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLY 182
Score = 181 (68.8 bits), Expect = 4.1e-16, Sum P(3) = 4.1e-16
Identities = 53/137 (38%), Positives = 75/137 (54%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI-AA 161
VEKYRP LD++V HQ+ + + + E V M + + GT + ++AL
Sbjct: 7 VEKYRPKRLDDIV-HQNN-AVMMLKE---VVRTKNMPHLIFHGPPGTGKTSAINALAHEL 61
Query: 162 FNSARDKLEVLELNASDDRGIGIVRDQIFQFA----STKTMHKS------SYKLIILDEA 211
F VLELNASDDRGI +VR++I + S +H S+KL++LDEA
Sbjct: 62 FGKENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEA 121
Query: 212 DAMTNDAQNALRRKLPV 228
D MT DAQ+ALRR + +
Sbjct: 122 DMMTEDAQSALRRIIEI 138
Score = 156 (60.0 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 28/80 (35%), Positives = 52/80 (65%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RF +ICNY+ KI+ I SRC+ +RF + ++ +L Y+ + E +++ D
Sbjct: 136 IEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYICQNENIDIVDDA 195
Query: 61 KKAIIDLSDGDMRKVLNILQ 80
+ II+ ++GD+R+ ++ILQ
Sbjct: 196 LEKIIETTEGDLRRAVSILQ 215
Score = 63 (27.2 bits), Expect = 4.1e-16, Sum P(3) = 4.1e-16
Identities = 13/58 (22%), Positives = 33/58 (56%)
Query: 226 LPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNIL 283
+ + D + II+ ++GD+R+ ++ILQ + + ++ ++V + G P+ + I+
Sbjct: 189 IDIVDDALEKIIETTEGDLRRAVSILQLCSCINT-KITLNSVLDVSGLPSDNIVYKII 245
Score = 60 (26.2 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 121 ISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNS 164
++ E +S+ ++L++S +YRL G ++ IQL + ++ +S
Sbjct: 282 VTNTEYEDSLKYQILLELSRHDYRLHCGATQYIQLLSFASSVHS 325
Score = 58 (25.5 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 478 VHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNS 521
V E +S+ ++L++S +YRL G ++ IQL + ++ +S
Sbjct: 282 VTNTEYEDSLKYQILLELSRHDYRLHCGATQYIQLLSFASSVHS 325
>UNIPROTKB|C9J8M3 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 OrthoDB:EOG4Q58PN IPI:IPI00792595
ProteinModelPortal:C9J8M3 SMR:C9J8M3 STRING:C9J8M3
Ensembl:ENST00000418288 ArrayExpress:C9J8M3 Bgee:C9J8M3
Uniprot:C9J8M3
Length = 214
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 75/150 (50%), Positives = 105/150 (70%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFAS-TKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
++ FA T + +S +K++ILDEAD+MT+ AQ ALRR +EK + RFC+ICN
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
Y+S+I + SRC++FRF PL + RL
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRL 211
Score = 174 (66.3 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 50/135 (37%), Positives = 80/135 (59%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +DE+ +++++ ++ +S L+ +D+ L G + S ++AA
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLK--KS------LEGADLPNLLFYGPPGTGKTSTILAAA 92
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS-TKTMHKSS------YKLIILDEA 211
F +L VLELNASD+RGI +VR+++ FA T + +S +K++ILDEA
Sbjct: 93 RELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEA 152
Query: 212 DAMTNDAQNALRRKL 226
D+MT+ AQ ALRR +
Sbjct: 153 DSMTSAAQAALRRTM 167
Score = 120 (47.3 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRL 45
+EK + RFC+ICNY+S+I + SRC++FRF PL + RL
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRL 211
>CGD|CAL0002015 [details] [associations]
symbol:RFC2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0002015
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000024 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224154 RefSeq:XP_720328.1
RefSeq:XP_888712.1 ProteinModelPortal:Q5AFN3 SMR:Q5AFN3
STRING:Q5AFN3 GeneID:3637939 GeneID:3703993 KEGG:cal:CaO19.7035
KEGG:cal:CaO19_7035 Uniprot:Q5AFN3
Length = 363
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 79/155 (50%), Positives = 103/155 (66%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + I LPH+LFYGPPGTGKT+TILA A++LY + + VLELNASD+RGI IVR+
Sbjct: 48 LTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGPNLYKSRVLELNASDERGISIVRE 107
Query: 357 QIFQFA----STKTMHKSS------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
+I FA S T YK+IILDEAD+MTNDAQ+ALRR +E + RF +
Sbjct: 108 KIKNFARLTISNPTKEDLQNYPCPPYKIIILDEADSMTNDAQSALRRTMENYAGITRFVL 167
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
ICNY+++I I SRC++FRF L++ RL Y
Sbjct: 168 ICNYITRIIDPITSRCSKFRFKLLNNENAQLRLKY 202
Score = 178 (67.7 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 56/138 (40%), Positives = 78/138 (56%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +L++ VS Q+ TI++ + +K ++ + L G + S ++A
Sbjct: 27 VEKYRPKSLND-VSSQE--HTIKV-----LTQTIKSGNLPHMLFYGPPGTGKTSTILALA 78
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFA----STKTMHKSS------YKLIIL 208
+ K VLELNASD+RGI IVR++I FA S T YK+IIL
Sbjct: 79 KELYGPNLYKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLQNYPCPPYKIIIL 138
Query: 209 DEADAMTNDAQNALRRKL 226
DEAD+MTNDAQ+ALRR +
Sbjct: 139 DEADSMTNDAQSALRRTM 156
Score = 147 (56.8 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E + RF +ICNY+++I I SRC++FRF L++ RL Y+ +QE + +
Sbjct: 156 MENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLRLKYIGQQENLRFESEN 215
Query: 61 KK-----AIIDLSDGDMRKVLNILQSAA 83
+ ++ +S GD+RK + LQSAA
Sbjct: 216 NEHQVIQELLKISGGDLRKAITYLQSAA 243
Score = 54 (24.1 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 236 IIDLSDGDMRKVLNILQSAA 255
++ +S GD+RK + LQSAA
Sbjct: 224 LLKISGGDLRKAITYLQSAA 243
>SGD|S000003829 [details] [associations]
symbol:RFC2 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031391 "Elg1 RFC-like complex"
evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0006272 "leading strand elongation" evidence=IDA] [GO:0017076
"purine nucleotide binding" evidence=ISS] [GO:0000075 "cell cycle
checkpoint" evidence=IMP] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0007062 "sister chromatid cohesion"
evidence=IPI] [GO:0003689 "DNA clamp loader activity" evidence=IDA]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000003829
GO:GO:0005524 GO:GO:0005634 EMBL:BK006943 GO:GO:0003677
GO:GO:0006298 EMBL:L47993 GO:GO:0017111 GO:GO:0017076 KO:K06883
RefSeq:NP_012602.3 GeneID:853531 KEGG:sce:YJR068W KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
RefSeq:NP_012606.3 GeneID:853535 KEGG:sce:YJR072C PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224154
OrthoDB:EOG4ZCXDF EMBL:D28499 EMBL:U26028 EMBL:Z49568 EMBL:AY557920
PIR:S45531 ProteinModelPortal:P40348 SMR:P40348 DIP:DIP-2528N
IntAct:P40348 MINT:MINT-480404 STRING:P40348 PaxDb:P40348
PeptideAtlas:P40348 EnsemblFungi:YJR068W CYGD:YJR068w
GeneTree:ENSGT00550000074917 OMA:SMTADAQ EvolutionaryTrace:P40348
NextBio:974230 Genevestigator:P40348 GermOnline:YJR068W
Uniprot:P40348
Length = 353
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 76/156 (48%), Positives = 106/156 (67%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + + LPH+LFYGPPGTGKT+TILA ++LY + +LELNASD+RGI IVR+
Sbjct: 49 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVRE 108
Query: 357 QIFQFASTKTMHKSS-----------YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
++ FA T+ K S YK+IILDEAD+MT DAQ+ALRR +E ++ RFC
Sbjct: 109 KVKNFARL-TVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFC 167
Query: 406 IICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ICNY+++I + SRC++FRF LD+S + RL +
Sbjct: 168 LICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRF 203
Score = 182 (69.1 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 34/83 (40%), Positives = 56/83 (67%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RFC+ICNY+++I + SRC++FRF LD+S + RL ++ EQE V
Sbjct: 157 METYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGV 216
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
+ I+D+S GD+R+ + +LQSA+
Sbjct: 217 LERILDISAGDLRRGITLLQSAS 239
Score = 178 (67.7 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
Identities = 57/139 (41%), Positives = 77/139 (55%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP LDE V+ QD T+ + LK +++ + L G + S ++A
Sbjct: 28 VEKYRPKNLDE-VTAQDHAVTV-------LKKTLKSANLPHMLFYGPPGTGKTSTILALT 79
Query: 163 NS--ARD--KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-----------YKLII 207
D K +LELNASD+RGI IVR+++ FA T+ K S YK+II
Sbjct: 80 KELYGPDLMKSRILELNASDERGISIVREKVKNFARL-TVSKPSKHDLENYPCPPYKIII 138
Query: 208 LDEADAMTNDAQNALRRKL 226
LDEAD+MT DAQ+ALRR +
Sbjct: 139 LDEADSMTADAQSALRRTM 157
Score = 41 (19.5 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 243 DMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNILRWLL 287
+++K +N + + A VN+ Y T N + WLL
Sbjct: 282 EIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLL 326
>UNIPROTKB|P53033 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006302
"double-strand break repair" evidence=TAS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005654 GO:GO:0003677
GO:GO:0006260 GO:GO:0000724 GO:GO:0017111 KO:K10755 eggNOG:COG0470
Reactome:REACT_115612 SUPFAM:SSF48019 GO:GO:0005663 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
EMBL:U12438 IPI:IPI00586061 PIR:I50704 RefSeq:NP_990861.1
UniGene:Gga.883 ProteinModelPortal:P53033 SMR:P53033 STRING:P53033
Ensembl:ENSGALT00000001980 GeneID:396542 KEGG:gga:396542
InParanoid:P53033 NextBio:20816578 Uniprot:P53033
Length = 359
Score = 329 (120.9 bits), Expect = 3.2e-33, Sum P(2) = 3.2e-33
Identities = 73/149 (48%), Positives = 97/149 (65%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI
Sbjct: 60 DTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDA-VLELNASNDRGI 118
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN
Sbjct: 119 DVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNA 178
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC R+ L S I++RL
Sbjct: 179 SDKIIEPIQSRCAVLRYTKLTDSQILARL 207
Score = 210 (79.0 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 57/154 (37%), Positives = 87/154 (56%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 44 VEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPP-------GTGKTTSILCLAR 96
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 97 ALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 156
Query: 220 NALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQS 253
ALRR + + + + + D K++ +QS
Sbjct: 157 QALRRTMEIYSKTTRFALACNASD--KIIEPIQS 188
Score = 175 (66.7 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 41/117 (35%), Positives = 64/117 (54%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L S I++RL ++E+E V T DG
Sbjct: 163 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDG 222
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 223 LEAIIFTAQGDMRQALNNLQSTYSGFGF-INSENVFKVC----DEPHPLLVKEMIQH 274
Score = 104 (41.7 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 223 RRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGYPTKTEITNI 282
+ +P T DG +AII + GDMR+ LN LQS + +N + V+ P + +
Sbjct: 213 KEDVPYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGF-INSENVFKVCDEPHPLLVKEM 271
Query: 283 LRWLLNESMDLCYKI 297
++ +N ++D YKI
Sbjct: 272 IQHCINANIDEAYKI 286
Score = 55 (24.4 bits), Expect = 3.2e-33, Sum P(2) = 3.2e-33
Identities = 10/54 (18%), Positives = 29/54 (53%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
G + D++ I + ++PE + ++ + ++ ++A G + +Q++ L+A
Sbjct: 294 GYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLA 347
>WB|WBGene00004340 [details] [associations]
symbol:rfc-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0045750 "positive regulation of S
phase of mitotic cell cycle" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006260
GO:GO:0000003 GO:GO:0000910 GO:GO:0017111 GO:GO:0045750 KO:K10755
eggNOG:COG0470 EMBL:FO080392 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 PIR:T16219 RefSeq:NP_498521.1
ProteinModelPortal:P53016 SMR:P53016 DIP:DIP-24293N IntAct:P53016
MINT:MINT-226482 STRING:P53016 PaxDb:P53016 EnsemblMetazoa:F31E3.3
GeneID:175976 KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976
WormBase:F31E3.3 InParanoid:P53016 OMA:CDLENNL NextBio:890574
Uniprot:P53016
Length = 334
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 71/140 (50%), Positives = 96/140 (68%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LPHLLFYGPPGTGKT+ LA R+L+ K F+ VL+LNASD+RGI +VR +I F+ +
Sbjct: 47 DLPHLLFYGPPGTGKTSAALAFCRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKS 106
Query: 365 KTMHKS-----SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
H K+IILDE DAMT +AQ A+RR+IE F+ RF +ICNY+S++ P +
Sbjct: 107 SLGHSHREDVLKLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVV 166
Query: 420 SRCTRFRFGPLDSSLIMSRL 439
SRC +FRF L + + + RL
Sbjct: 167 SRCAKFRFKSLPAEIQVQRL 186
Score = 166 (63.5 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 31/83 (37%), Positives = 52/83 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE F+ RF +ICNY+S++ P + SRC +FRF L + + + RL + + E ++ D
Sbjct: 142 IEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGTPMSDDE 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
K +++ S+GD+R+ + LQS A
Sbjct: 202 LKQVMEYSEGDLRRAVCTLQSLA 224
Score = 164 (62.8 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 51/130 (39%), Positives = 70/130 (53%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP TLD+ +++QD + T ML L+ D+ + L G + SA +A
Sbjct: 19 EKYRPKTLDD-IAYQDEVVT------MLKG-ALQGRDLPHLLFYGPPGTGKTSAALAFCR 70
Query: 164 SARDKL----EVLELNASDDRGIGIVRDQIFQFASTKTMHKS-----SYKLIILDEADAM 214
K VL+LNASD+RGI +VR +I F+ + H K+IILDE DAM
Sbjct: 71 QLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIIILDEVDAM 130
Query: 215 TNDAQNALRR 224
T +AQ A+RR
Sbjct: 131 TREAQAAMRR 140
Score = 59 (25.8 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAA 255
P++ D K +++ S+GD+R+ + LQS A
Sbjct: 196 PMSDDELKQVMEYSEGDLRRAVCTLQSLA 224
>UNIPROTKB|P53016 [details] [associations]
symbol:rfc-4 "Replication factor C subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0006260 GO:GO:0000003 GO:GO:0000910
GO:GO:0017111 GO:GO:0045750 KO:K10755 eggNOG:COG0470 EMBL:FO080392
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 PIR:T16219
RefSeq:NP_498521.1 ProteinModelPortal:P53016 SMR:P53016
DIP:DIP-24293N IntAct:P53016 MINT:MINT-226482 STRING:P53016
PaxDb:P53016 EnsemblMetazoa:F31E3.3 GeneID:175976
KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976 WormBase:F31E3.3
InParanoid:P53016 OMA:CDLENNL NextBio:890574 Uniprot:P53016
Length = 334
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 71/140 (50%), Positives = 96/140 (68%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFAST 364
+LPHLLFYGPPGTGKT+ LA R+L+ K F+ VL+LNASD+RGI +VR +I F+ +
Sbjct: 47 DLPHLLFYGPPGTGKTSAALAFCRQLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKS 106
Query: 365 KTMHKS-----SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
H K+IILDE DAMT +AQ A+RR+IE F+ RF +ICNY+S++ P +
Sbjct: 107 SLGHSHREDVLKLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVV 166
Query: 420 SRCTRFRFGPLDSSLIMSRL 439
SRC +FRF L + + + RL
Sbjct: 167 SRCAKFRFKSLPAEIQVQRL 186
Score = 166 (63.5 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 31/83 (37%), Positives = 52/83 (62%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE F+ RF +ICNY+S++ P + SRC +FRF L + + + RL + + E ++ D
Sbjct: 142 IEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGTPMSDDE 201
Query: 61 KKAIIDLSDGDMRKVLNILQSAA 83
K +++ S+GD+R+ + LQS A
Sbjct: 202 LKQVMEYSEGDLRRAVCTLQSLA 224
Score = 164 (62.8 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 51/130 (39%), Positives = 70/130 (53%)
Query: 104 EKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
EKYRP TLD+ +++QD + T ML L+ D+ + L G + SA +A
Sbjct: 19 EKYRPKTLDD-IAYQDEVVT------MLKG-ALQGRDLPHLLFYGPPGTGKTSAALAFCR 70
Query: 164 SARDKL----EVLELNASDDRGIGIVRDQIFQFASTKTMHKS-----SYKLIILDEADAM 214
K VL+LNASD+RGI +VR +I F+ + H K+IILDE DAM
Sbjct: 71 QLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIIILDEVDAM 130
Query: 215 TNDAQNALRR 224
T +AQ A+RR
Sbjct: 131 TREAQAAMRR 140
Score = 59 (25.8 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAA 255
P++ D K +++ S+GD+R+ + LQS A
Sbjct: 196 PMSDDELKQVMEYSEGDLRRAVCTLQSLA 224
>UNIPROTKB|P35250 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006260 "DNA replication"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=TAS] [GO:0032201 "telomere maintenance via
semi-conservative replication" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0003677 GO:GO:0017111 GO:GO:0000084 KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722 EMBL:CH471200
Orphanet:904 Reactome:REACT_383 GO:GO:0006283 GO:GO:0006271
GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663
EMBL:AF045555 EMBL:AC005081 CTD:5982 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI Pfam:PF08542 EMBL:M87338
EMBL:AF483622 EMBL:AB451243 EMBL:BC002813 IPI:IPI00017412
IPI:IPI00218280 PIR:A42700 RefSeq:NP_002905.2 RefSeq:NP_852136.1
UniGene:Hs.647062 ProteinModelPortal:P35250 SMR:P35250
DIP:DIP-34367N IntAct:P35250 STRING:P35250 PhosphoSite:P35250
DMDM:2507300 PaxDb:P35250 PeptideAtlas:P35250 PRIDE:P35250
DNASU:5982 Ensembl:ENST00000055077 Ensembl:ENST00000352131
Ensembl:ENST00000573234 Ensembl:ENST00000576908 GeneID:5982
KEGG:hsa:5982 UCSC:uc003uaj.3 GeneCards:GC07M073645 HGNC:HGNC:9970
HPA:HPA029493 MIM:194050 MIM:600404 neXtProt:NX_P35250
PharmGKB:PA34339 InParanoid:P35250 PhylomeDB:P35250 ChiTaRS:RFC2
GenomeRNAi:5982 NextBio:23285 ArrayExpress:P35250 Bgee:P35250
CleanEx:HS_RFC2 Genevestigator:P35250 GermOnline:ENSG00000049541
Uniprot:P35250
Length = 354
Score = 327 (120.2 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 75/157 (47%), Positives = 101/157 (64%)
Query: 287 LNESM---DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLEL 343
LNE + D ++ F E +P+++ GPPGTGKTT+IL AR L A +AM LEL
Sbjct: 47 LNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAM-LEL 105
Query: 344 NASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNV 402
NAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++
Sbjct: 106 NASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTT 165
Query: 403 RFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RF + CN KI IQSRC R+ L + I++RL
Sbjct: 166 RFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRL 202
Score = 211 (79.3 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 56/154 (36%), Positives = 88/154 (57%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 39 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPP-------GTGKTTSILCLAR 91
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K +LELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 92 ALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 151
Query: 220 NALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQS 253
ALRR + + + + + D K++ +QS
Sbjct: 152 QALRRTMEIYSKTTRFALACNASD--KIIEPIQS 183
Score = 178 (67.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 42/117 (35%), Positives = 65/117 (55%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + I++RL VIE+E+V T DG
Sbjct: 158 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDG 217
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 218 LEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKVC----DEPHPLLVKEMIQH 269
Score = 110 (43.8 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 208 LDEADAMTNDAQNALRR-KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDT 266
L +A +T N + + ++P T DG +AII + GDMR+ LN LQS + +N +
Sbjct: 193 LTDAQILTR-LMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGF-INSEN 250
Query: 267 VYNSVGYPTKTEITNILRWLLNESMDLCYKI 297
V+ P + +++ +N ++D YKI
Sbjct: 251 VFKVCDEPHPLLVKEMIQHCVNANIDEAYKI 281
Score = 48 (22.0 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 10/54 (18%), Positives = 28/54 (51%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
G + DI+ I + ++ E + ++ + ++ ++A G + +Q++ L+A
Sbjct: 289 GYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLA 342
>UNIPROTKB|F6ULR2 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 OMA:IQCLARI
Pfam:PF08542 Ensembl:ENSCAFT00000019010 EMBL:AAEX03004231
EMBL:AAEX03004232 Uniprot:F6ULR2
Length = 364
Score = 327 (120.2 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 74/157 (47%), Positives = 101/157 (64%)
Query: 287 LNESM---DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLEL 343
LNE + D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLEL
Sbjct: 57 LNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDA-VLEL 115
Query: 344 NASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNV 402
NAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++
Sbjct: 116 NASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTT 175
Query: 403 RFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RF + CN KI IQSRC R+ L + +++RL
Sbjct: 176 RFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARL 212
Score = 215 (80.7 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
Identities = 57/154 (37%), Positives = 88/154 (57%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 49 VEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPP-------GTGKTTSILCLAR 101
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 102 ALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 161
Query: 220 NALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQS 253
ALRR + + + + + D K++ +QS
Sbjct: 162 QALRRTMEIYSKTTRFALACNASD--KIIEPIQS 193
Score = 178 (67.7 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 40/117 (34%), Positives = 65/117 (55%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + +++RL V+EQEKV T DG
Sbjct: 168 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDG 227
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH 117
+A+I + GDMR+ LN +QS + +N + +F + ++ P + E++ H
Sbjct: 228 LEAVIFTAQGDMRQALNNVQSTFSGFGF-INSENVFKVC----DEPHPLLVKEMIQH 279
Score = 48 (22.0 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 10/54 (18%), Positives = 28/54 (51%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
G + DI+ I + ++ E + ++ + ++ ++A G + +Q++ L+A
Sbjct: 299 GYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLA 352
>UNIPROTKB|Q05B83 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 EMBL:BC122635 IPI:IPI00704020
RefSeq:NP_001074372.1 UniGene:Bt.35362 ProteinModelPortal:Q05B83
SMR:Q05B83 STRING:Q05B83 PRIDE:Q05B83 Ensembl:ENSBTAT00000024740
GeneID:508652 KEGG:bta:508652 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 InParanoid:Q05B83
OMA:IQCLARI OrthoDB:EOG48WC2D NextBio:20868620 ArrayExpress:Q05B83
Pfam:PF08542 Uniprot:Q05B83
Length = 352
Score = 324 (119.1 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 75/157 (47%), Positives = 100/157 (63%)
Query: 287 LNESM---DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLEL 343
LNE + D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLEL
Sbjct: 45 LNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDA-VLEL 103
Query: 344 NASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNV 402
NAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++
Sbjct: 104 NASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTT 163
Query: 403 RFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RF + CN KI IQSRC R+ L I++RL
Sbjct: 164 RFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARL 200
Score = 214 (80.4 bits), Expect = 5.8e-16, Sum P(2) = 5.8e-16
Identities = 57/154 (37%), Positives = 88/154 (57%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPP-------GTGKTTSILCLAR 89
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 90 ALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 149
Query: 220 NALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQS 253
ALRR + + + + + D K++ +QS
Sbjct: 150 QALRRTMEIYSKTTRFALACNASD--KIIEPIQS 181
Score = 180 (68.4 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 43/117 (36%), Positives = 64/117 (54%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L I++RL VIE+EKV T DG
Sbjct: 156 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLSVIEKEKVQYTDDG 215
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 216 LEAIIFTAQGDMRQALNNLQSTYSGFGF-INSENVFKVC----DEPHPLLVKEMIQH 267
Score = 48 (22.0 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 10/54 (18%), Positives = 28/54 (51%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
G + DI+ I + ++ E + ++ + ++ ++A G + +Q++ L+A
Sbjct: 287 GYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLA 340
>UNIPROTKB|I3LHX6 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 GeneTree:ENSGT00550000075050 OMA:IQCLARI Pfam:PF08542
EMBL:FP340223 Ensembl:ENSSSCT00000028815 Uniprot:I3LHX6
Length = 295
Score = 322 (118.4 bits), Expect = 7.4e-32, Sum P(2) = 7.4e-32
Identities = 71/141 (50%), Positives = 94/141 (66%)
Query: 300 FIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI +VR++I
Sbjct: 4 FAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDA-VLELNASNDRGIDVVRNKIK 62
Query: 360 QFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418
FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN KI I
Sbjct: 63 MFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPI 122
Query: 419 QSRCTRFRFGPLDSSLIMSRL 439
QSRC R+ L + I++RL
Sbjct: 123 QSRCAVLRYTKLTDAQILARL 143
Score = 180 (68.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 43/117 (36%), Positives = 65/117 (55%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + I++RL VIE+EKV T DG
Sbjct: 99 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLNVIEKEKVPYTDDG 158
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 159 LEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKVC----DEPHPLLVKEMIQH 210
Score = 174 (66.3 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 44/107 (41%), Positives = 63/107 (58%)
Query: 148 GTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLI 206
GT + + L A K VLELNAS+DRGI +VR++I FA K T+ K +K+I
Sbjct: 20 GTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKII 79
Query: 207 ILDEADAMTNDAQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQS 253
ILDEAD+MT+ AQ ALRR + + + + + D K++ +QS
Sbjct: 80 ILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASD--KIIEPIQS 124
Score = 50 (22.7 bits), Expect = 7.4e-32, Sum P(2) = 7.4e-32
Identities = 11/54 (20%), Positives = 28/54 (51%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
G + DI+ I + ++ E + ++ + ++ R+A G + +Q++ L+A
Sbjct: 230 GYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMRVAEGVNSLLQMAGLLA 283
>RGD|621198 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:621198
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 OMA:IQCLARI
OrthoDB:EOG48WC2D Pfam:PF08542 HSSP:P40339 EMBL:BC082110
IPI:IPI00194781 RefSeq:NP_446238.1 UniGene:Rn.113319
ProteinModelPortal:Q641W4 SMR:Q641W4 STRING:Q641W4 PRIDE:Q641W4
Ensembl:ENSRNOT00000001989 GeneID:116468 KEGG:rno:116468
UCSC:RGD:621198 InParanoid:Q641W4 NextBio:619010
Genevestigator:Q641W4 Uniprot:Q641W4
Length = 349
Score = 328 (120.5 bits), Expect = 7.7e-32, Sum P(2) = 7.7e-32
Identities = 75/157 (47%), Positives = 101/157 (64%)
Query: 287 LNESM---DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLEL 343
LNE + D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLEL
Sbjct: 42 LNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDA-VLEL 100
Query: 344 NASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNV 402
NAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++
Sbjct: 101 NASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTT 160
Query: 403 RFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RF + CN KI IQSRC R+ L + ++SRL
Sbjct: 161 RFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRL 197
Score = 214 (80.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 57/154 (37%), Positives = 88/154 (57%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 34 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPP-------GTGKTTSILCLAR 86
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 87 ALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 146
Query: 220 NALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQS 253
ALRR + + + + + D K++ +QS
Sbjct: 147 QALRRTMEIYSKTTRFALACNASD--KIIEPIQS 178
Score = 184 (69.8 bits), Expect = 8.8e-12, Sum P(2) = 8.8e-12
Identities = 43/117 (36%), Positives = 65/117 (55%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + ++SRL VIE+EKV T DG
Sbjct: 153 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPYTDDG 212
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 213 LEAIIFTAQGDMRQALNNLQSTFSGFG-YINSENVFKVC----DEPHPLLVKEMIQH 264
Score = 43 (20.2 bits), Expect = 7.7e-32, Sum P(2) = 7.7e-32
Identities = 9/54 (16%), Positives = 27/54 (50%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
G + D++ I + + E + ++ + ++ ++A G + +Q++ L+A
Sbjct: 284 GYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNSLLQMAGLLA 337
>FB|FBgn0260985 [details] [associations]
symbol:RfC4 "Replication factor C subunit 4" species:7227
"Drosophila melanogaster" [GO:0007076 "mitotic chromosome
condensation" evidence=IMP;NAS] [GO:0000819 "sister chromatid
segregation" evidence=NAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=NAS;TAS] [GO:0006260 "DNA replication"
evidence=ISS;NAS;TAS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;NAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA;NAS]
[GO:0016321 "female meiosis chromosome segregation" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0000077 "DNA damage checkpoint" evidence=IMP]
[GO:0000076 "DNA replication checkpoint" evidence=IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0000077
GO:GO:0005875 EMBL:AE014296 GO:GO:0022008 GO:GO:0003677
GO:GO:0006281 GO:GO:0046331 GO:GO:0017111 GO:GO:0007076 KO:K10755
eggNOG:COG0470 GO:GO:0016321 GO:GO:0000076 GO:GO:0006271
SUPFAM:SSF48019 EMBL:U15967 GeneTree:ENSGT00550000075050
OMA:IQCLARI Pfam:PF08542 EMBL:AY094829 PIR:S55020
RefSeq:NP_523915.1 UniGene:Dm.839 ProteinModelPortal:P53034
SMR:P53034 DIP:DIP-22077N IntAct:P53034 MINT:MINT-925288
STRING:P53034 PaxDb:P53034 PRIDE:P53034 EnsemblMetazoa:FBtr0073264
GeneID:38492 KEGG:dme:Dmel_CG14999 CTD:5984 FlyBase:FBgn0260985
InParanoid:P53034 OrthoDB:EOG4P8D0Q PhylomeDB:P53034
GenomeRNAi:38492 NextBio:808930 Bgee:P53034 GermOnline:CG14999
Uniprot:P53034
Length = 331
Score = 306 (112.8 bits), Expect = 9.4e-32, Sum P(2) = 9.4e-32
Identities = 64/149 (42%), Positives = 94/149 (63%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
D +++ F + P+++ GPPG GKTTTI AR L + + VLELNAS++RGI
Sbjct: 35 DTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDS-YKEAVLELNASNERGI 93
Query: 352 GIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+VR++I FA K T+ + +K++ILDEAD+MT AQ ALRR +E +++ RF + CN
Sbjct: 94 DVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNT 153
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
KI IQSRC RF L + ++++L
Sbjct: 154 SEKIIEPIQSRCAMLRFTKLSDAQVLAKL 182
Score = 187 (70.9 bits), Expect = 8.3e-15, Sum P(2) = 8.3e-15
Identities = 41/117 (35%), Positives = 66/117 (56%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +++ RF + CN KI IQSRC RF L + ++++L V + EK+N T DG
Sbjct: 138 MEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDG 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH 117
+AI+ + GDMR+ LN LQS A D + + +F + ++ P L+E++ H
Sbjct: 198 LEAIVFTAQGDMRQGLNNLQSTAQGFGD-ITAENVFKVC----DEPHPKLLEEMIHH 249
Score = 187 (70.9 bits), Expect = 8.3e-15, Sum P(2) = 8.3e-15
Identities = 49/154 (31%), Positives = 86/154 (55%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
+EKYRP E+V ++D ++ + + + ++++ G + IQ A I
Sbjct: 19 IEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPP-----GVGKTTTIQCLARIL 73
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
+S ++ VLELNAS++RGI +VR++I FA K T+ + +K++ILDEAD+MT AQ
Sbjct: 74 LGDSYKEA--VLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQ 131
Query: 220 NALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQS 253
ALRR + + + + + + K++ +QS
Sbjct: 132 QALRRTMEIYSSTTRFALACNTSE--KIIEPIQS 163
Score = 67 (28.6 bits), Expect = 9.4e-32, Sum P(2) = 9.4e-32
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSAR 523
G + DI+ I + R+ I E + +D + ++ ++ G + +QL+AL+A A
Sbjct: 269 GYSPEDIIANIFRVCKRINIDEHLKLDFIREIGITHMKIIDGINSLLQLTALLAKLCIAA 328
Query: 524 DK 525
+K
Sbjct: 329 EK 330
>ZFIN|ZDB-GENE-050306-29 [details] [associations]
symbol:rfc2 "replication factor C (activator 1) 2"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-050306-29 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 SUPFAM:SSF48019 GeneTree:ENSGT00550000075050
Pfam:PF08542 EMBL:CR450711 IPI:IPI00505688
Ensembl:ENSDART00000122513 Bgee:F1R0T0 Uniprot:F1R0T0
Length = 384
Score = 326 (119.8 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
Identities = 72/145 (49%), Positives = 94/145 (64%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ F E +P+++ GPPGTGKTT+IL AR L A +A VLELNAS+DRGI +VR
Sbjct: 89 RLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAMKDA-VLELNASNDRGIDVVR 147
Query: 356 DQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++ RF + CN KI
Sbjct: 148 NKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKI 207
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRL 439
IQSRC R+ L IM RL
Sbjct: 208 IEPIQSRCAVLRYSKLRDEQIMMRL 232
Score = 211 (79.3 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 56/154 (36%), Positives = 88/154 (57%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V +++ +S +E+ E + ++++ GT + + L
Sbjct: 69 VEKYRPLKLNEIVGNEETVSRLEVFAREGNVPNIIIAGPP-------GTGKTTSILCLAR 121
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 122 ALLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 181
Query: 220 NALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQS 253
ALRR + + + + + D K++ +QS
Sbjct: 182 QALRRTMEIYSKTTRFALACNASD--KIIEPIQS 213
Score = 177 (67.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 39/96 (40%), Positives = 55/96 (57%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L IM RL V+E+E ++VT DG
Sbjct: 188 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKENLHVTNDG 247
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF 96
+AII + GDMR+ LN LQS + +N + +F
Sbjct: 248 LEAIIFTAQGDMRQALNNLQSTNSGFG-YINSENVF 282
Score = 42 (19.8 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
Identities = 9/53 (16%), Positives = 27/53 (50%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALI 516
G + DI+ I + ++ E + ++ + ++ ++A G + +Q++ L+
Sbjct: 319 GYSPEDIIGNIFRVCKTFQMAEYLKLEYIKEIGYTHMKVAEGVNSLLQMAGLL 371
>MGI|MGI:1341868 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1341868
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 EMBL:AF289664
SUPFAM:SSF48019 GO:GO:0005663 EMBL:AF139987 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
ChiTaRS:RFC2 EMBL:AK075997 EMBL:BC023028 IPI:IPI00124744
RefSeq:NP_064406.1 UniGene:Mm.332739 ProteinModelPortal:Q9WUK4
SMR:Q9WUK4 STRING:Q9WUK4 PhosphoSite:Q9WUK4 PaxDb:Q9WUK4
PRIDE:Q9WUK4 Ensembl:ENSMUST00000023867 GeneID:19718 KEGG:mmu:19718
InParanoid:Q9WUK4 NextBio:297116 Bgee:Q9WUK4 CleanEx:MM_RFC2
Genevestigator:Q9WUK4 GermOnline:ENSMUSG00000023104 Uniprot:Q9WUK4
Length = 349
Score = 325 (119.5 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 74/157 (47%), Positives = 101/157 (64%)
Query: 287 LNESM---DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLEL 343
LNE + D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLEL
Sbjct: 42 LNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDA-VLEL 100
Query: 344 NASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNV 402
NAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++
Sbjct: 101 NASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTT 160
Query: 403 RFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RF + CN KI IQSRC R+ L + +++RL
Sbjct: 161 RFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRL 197
Score = 214 (80.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 57/154 (37%), Positives = 88/154 (57%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 34 VEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPP-------GTGKTTSILCLAR 86
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 87 ALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 146
Query: 220 NALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQS 253
ALRR + + + + + D K++ +QS
Sbjct: 147 QALRRTMEIYSKTTRFALACNASD--KIIEPIQS 178
Score = 181 (68.8 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 42/117 (35%), Positives = 65/117 (55%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + +++RL VIE+EKV T DG
Sbjct: 153 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDG 212
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 213 LEAIIFTAQGDMRQALNNLQSTFSGFG-YINSENVFKVC----DEPHPLLVKEMIQH 264
Score = 43 (20.2 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 9/54 (16%), Positives = 27/54 (50%)
Query: 464 GLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
G + D++ I + + E + ++ + ++ ++A G + +Q++ L+A
Sbjct: 284 GYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGVNSLLQMAGLLA 337
>WB|WBGene00004338 [details] [associations]
symbol:rfc-2 species:6239 "Caenorhabditis elegans"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260
GO:GO:0040011 GO:GO:0000003 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
OMA:IQCLARI Pfam:PF08542 EMBL:FO080408 PIR:D88638
RefSeq:NP_500069.1 HSSP:Q8U4J3 ProteinModelPortal:O44175 SMR:O44175
DIP:DIP-26649N IntAct:O44175 MINT:MINT-1044481 STRING:O44175
PaxDb:O44175 EnsemblMetazoa:F58F6.4 GeneID:176946
KEGG:cel:CELE_F58F6.4 UCSC:F58F6.4 CTD:176946 WormBase:F58F6.4
InParanoid:O44175 NextBio:894694 Uniprot:O44175
Length = 334
Score = 305 (112.4 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
Identities = 66/138 (47%), Positives = 90/138 (65%)
Query: 303 ENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362
E +P+++ GPPG GKTT++ A AR+L A VLELNASD+RGI +VR +I FA
Sbjct: 40 EGNVPNIVLSGPPGCGKTTSVWALARELLGDKVKEA-VLELNASDERGIDVVRHRIKTFA 98
Query: 363 STK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSR 421
TK T+ + +K+IILDEAD+MT+ AQ ALRR +E +T RF + CN KI IQSR
Sbjct: 99 QTKVTLPEGRHKIIILDEADSMTDGAQQALRRTMEMYTKTTRFALACNQSEKIIEPIQSR 158
Query: 422 CTRFRFGPLDSSLIMSRL 439
C R+ L +++R+
Sbjct: 159 CALLRYTKLSPVQLLTRV 176
Score = 201 (75.8 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 56/154 (36%), Positives = 86/154 (55%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L ++V +++I+ +++ E + ++VL G + + AL
Sbjct: 13 VEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPP-------GCGKTTSVWALAR 65
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
+ K VLELNASD+RGI +VR +I FA TK T+ + +K+IILDEAD+MT+ AQ
Sbjct: 66 ELLGDKVKEAVLELNASDERGIDVVRHRIKTFAQTKVTLPEGRHKIIILDEADSMTDGAQ 125
Query: 220 NALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQS 253
ALRR + + K L+ K++ +QS
Sbjct: 126 QALRRTMEMYT--KTTRFALACNQSEKIIEPIQS 157
Score = 162 (62.1 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 35/95 (36%), Positives = 54/95 (56%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E +T RF + CN KI IQSRC R+ L +++R+ V + EKVN G
Sbjct: 132 MEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVNYDDGG 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
+AI+ + GDMR+ LN LQ+ A+ + VN++ +
Sbjct: 192 LEAILFTAQGDMRQALNNLQATVNAY-ELVNKENV 225
Score = 58 (25.5 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 464 GLALTDILTEISLLVHRLE----IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
G + DI++ + +V +E + E + ++ + +++ R+ G + K+QLS LIA
Sbjct: 263 GFSSDDIVSTLFRVVKTVELSKNVSEQLRMEYIRQIAMCHMRIVQGLTSKLQLSRLIA 320
Score = 58 (25.5 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 112 DELVSHQ-DIISTIE----IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
D++VS ++ T+E + E + ++ + +++ R+ G + K+QLS LIA
Sbjct: 267 DDIVSTLFRVVKTVELSKNVSEQLRMEYIRQIAMCHMRIVQGLTSKLQLSRLIA 320
>DICTYBASE|DDB_G0291868 [details] [associations]
symbol:rfc2 "replication factor C subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0006298
"mismatch repair" evidence=ISS] [GO:0006272 "leading strand
elongation" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0291868 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000155_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000186 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 OMA:IQCLARI Pfam:PF08542 RefSeq:XP_629875.1
HSSP:P40339 ProteinModelPortal:Q54E21 SMR:Q54E21 STRING:Q54E21
EnsemblProtists:DDB0232231 GeneID:8628373 KEGG:ddi:DDB_G0291868
ProtClustDB:CLSZ2728742 Uniprot:Q54E21
Length = 338
Score = 311 (114.5 bits), Expect = 4.9e-30, Sum P(2) = 4.9e-30
Identities = 68/138 (49%), Positives = 89/138 (64%)
Query: 303 ENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362
+ LP+++ GPPGTGKT++IL AR L A + V ELNASDDR + +VRD+I FA
Sbjct: 50 DGNLPNIIISGPPGTGKTSSILCLARALLG-ANYKEAVYELNASDDRTLDVVRDKIKSFA 108
Query: 363 STK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSR 421
K T+ +K+IILDE D+MT+ AQ ALRRI+E ++ RF CN +KI IQSR
Sbjct: 109 MKKVTLPAGRHKIIILDEVDSMTSGAQQALRRIMEIYSGTTRFAFACNQSTKIIEPIQSR 168
Query: 422 CTRFRFGPLDSSLIMSRL 439
C RF L S I++RL
Sbjct: 169 CAVLRFTRLSDSQILTRL 186
Score = 191 (72.3 bits), Expect = 6.2e-13, Sum P(2) = 6.2e-13
Identities = 51/131 (38%), Positives = 75/131 (57%)
Query: 99 LVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSAL 158
L+ VEKYRP + ++V +++ +S +E S+ D + +I GT + + L
Sbjct: 19 LLPWVEKYRPILIKDIVGNEETVSRLE---SISKDG--NLPNIIISGPPGTGKTSSILCL 73
Query: 159 IAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTND 217
A A K V ELNASDDR + +VRD+I FA K T+ +K+IILDE D+MT+
Sbjct: 74 ARALLGANYKEAVYELNASDDRTLDVVRDKIKSFAMKKVTLPAGRHKIIILDEVDSMTSG 133
Query: 218 AQNALRRKLPV 228
AQ ALRR + +
Sbjct: 134 AQQALRRIMEI 144
Score = 164 (62.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 37/81 (45%), Positives = 49/81 (60%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF CN +KI IQSRC RF L S I++RL V++ EKV T DG
Sbjct: 142 MEIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREVVQIEKVPYTDDG 201
Query: 61 KKAIIDLSDGDMRKVLNILQS 81
AII ++GDMR+ LN LQ+
Sbjct: 202 LAAIIFTAEGDMRQALNNLQA 222
Score = 45 (20.9 bits), Expect = 4.9e-30, Sum P(2) = 4.9e-30
Identities = 12/55 (21%), Positives = 27/55 (49%)
Query: 464 GLALTDILTEI-SLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
G + DI++ + S+ IPE ++ + ++ R G + +QL+ L++
Sbjct: 273 GYSSIDIISALFSITKSSNNIPEYQKLEFLKEIGFCNLRATTGVNTLVQLTGLLS 327
Score = 41 (19.5 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 122 STIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
S+ IPE ++ + ++ R G + +QL+ L++
Sbjct: 289 SSNNIPEYQKLEFLKEIGFCNLRATTGVNTLVQLTGLLS 327
>POMBASE|SPAC1687.03c [details] [associations]
symbol:rfc4 "DNA replication factor C complex subunit
Rfc4 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0031389 "Rad17 RFC-like complex"
evidence=TAS] [GO:0031390 "Ctf18 RFC-like complex" evidence=TAS]
[GO:0031391 "Elg1 RFC-like complex" evidence=IDA] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748
PomBase:SPAC1687.03c GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0007049 GO:GO:0000790
GO:GO:0043596 GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0031390
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 HOGENOM:HOG000224155 Pfam:PF08542 PIR:T37746
RefSeq:NP_593121.1 ProteinModelPortal:O94449 SMR:O94449
STRING:O94449 EnsemblFungi:SPAC1687.03c.1 GeneID:2542790
KEGG:spo:SPAC1687.03c OMA:GTYELPW OrthoDB:EOG4PP1RM
NextBio:20803834 Uniprot:O94449
Length = 342
Score = 294 (108.6 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 65/138 (47%), Positives = 85/138 (61%)
Query: 303 ENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362
E +PHL+ G PG GKTT+IL A L A + VLELNASD+RGI +VR++I FA
Sbjct: 51 EGNMPHLVISGMPGIGKTTSILCLAHALLGPA-YKEGVLELNASDERGIDVVRNRIKAFA 109
Query: 363 STKT-MHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSR 421
K + +K+IILDEAD+MT AQ ALRR +E ++ RF + CN +KI IQSR
Sbjct: 110 QKKVILPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSR 169
Query: 422 CTRFRFGPLDSSLIMSRL 439
C R+ L ++ RL
Sbjct: 170 CAILRYSRLTDQQVLQRL 187
Score = 191 (72.3 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 55/154 (35%), Positives = 84/154 (54%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP LD++V +++ I +++ E + LV+ S + G + + L
Sbjct: 24 VEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVI--SGMP-----GIGKTTSILCLAH 76
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKT-MHKSSYKLIILDEADAMTNDAQ 219
A K VLELNASD+RGI +VR++I FA K + +K+IILDEAD+MT AQ
Sbjct: 77 ALLGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDEADSMTAGAQ 136
Query: 220 NALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQS 253
ALRR + + + + L+ K++ +QS
Sbjct: 137 QALRRTMEIYSNTTR--FALACNQSNKIIEPIQS 168
Score = 166 (63.5 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 36/96 (37%), Positives = 53/96 (55%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN +KI IQSRC R+ L ++ RL + + EKVN T DG
Sbjct: 143 MEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDG 202
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF 96
A+I ++GDMR+ +N LQS VN + +F
Sbjct: 203 LAALIMTAEGDMRQAVNNLQSTVAGFG-LVNGENVF 237
Score = 58 (25.5 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 464 GLALTDILTEISLLVHRLE-IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
G + DI+T + +V ++ IPE ++++ ++ + G +QLS L+ +
Sbjct: 274 GFSAVDIVTNMFRVVKTMDSIPEFSRLEMLKEIGQTHMIILEGVQTLLQLSGLVCRLAKS 333
Query: 523 RDKLEA 528
+ K E+
Sbjct: 334 QMKPES 339
Score = 48 (22.0 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 13/63 (20%), Positives = 31/63 (49%)
Query: 109 STLDELVSHQDIISTIE-IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 167
S +D + + ++ T++ IPE ++++ ++ + G +QLS L+ ++
Sbjct: 276 SAVDIVTNMFRVVKTMDSIPEFSRLEMLKEIGQTHMIILEGVQTLLQLSGLVCRLAKSQM 335
Query: 168 KLE 170
K E
Sbjct: 336 KPE 338
>UNIPROTKB|E2QSU1 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
Ensembl:ENSCAFT00000019010 Uniprot:E2QSU1
Length = 316
Score = 327 (120.2 bits), Expect = 3.7e-29, P = 3.7e-29
Identities = 74/157 (47%), Positives = 101/157 (64%)
Query: 287 LNESM---DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLEL 343
LNE + D ++ F E +P+++ GPPGTGKTT+IL AR L A +A VLEL
Sbjct: 45 LNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDA-VLEL 103
Query: 344 NASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNV 402
NAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ ALRR +E ++
Sbjct: 104 NASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTT 163
Query: 403 RFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
RF + CN KI IQSRC R+ L + +++RL
Sbjct: 164 RFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARL 200
Score = 215 (80.7 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 57/154 (37%), Positives = 88/154 (57%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEI--PESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP L+E+V ++D +S +E+ E + ++++ GT + + L
Sbjct: 37 VEKYRPVKLNEIVGNEDTVSRLEVFAKEGNVPNIIIAGPP-------GTGKTTSILCLAR 89
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQ 219
A K VLELNAS+DRGI +VR++I FA K T+ K +K+IILDEAD+MT+ AQ
Sbjct: 90 ALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 149
Query: 220 NALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQS 253
ALRR + + + + + D K++ +QS
Sbjct: 150 QALRRTMEIYSKTTRFALACNASD--KIIEPIQS 181
Score = 178 (67.7 bits), Expect = 6.2e-11, P = 6.2e-11
Identities = 40/117 (34%), Positives = 65/117 (55%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + +++RL V+EQEKV T DG
Sbjct: 156 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDG 215
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH 117
+A+I + GDMR+ LN +QS + +N + +F + ++ P + E++ H
Sbjct: 216 LEAVIFTAQGDMRQALNNVQSTFSGFGF-INSENVFKVC----DEPHPLLVKEMIQH 267
>SGD|S000005454 [details] [associations]
symbol:RFC4 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0007062 "sister chromatid
cohesion" evidence=IPI] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;IDA] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI] [GO:0007049
"cell cycle" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0031389 "Rad17
RFC-like complex" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 SGD:S000005454 GO:GO:0005524 GO:GO:0005634
EMBL:BK006948 GO:GO:0003677 GO:GO:0006298 EMBL:X83121 GO:GO:0017111
KO:K10755 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 EMBL:U26030 PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 Pfam:PF08542 OrthoDB:EOG4PP1RM EMBL:L20502
EMBL:Z74836 PIR:A53845 RefSeq:NP_014547.1 ProteinModelPortal:P40339
SMR:P40339 DIP:DIP-2530N IntAct:P40339 MINT:MINT-540691
STRING:P40339 PaxDb:P40339 PeptideAtlas:P40339 EnsemblFungi:YOL094C
GeneID:854059 KEGG:sce:YOL094C CYGD:YOL094c OMA:TMELYSN
EvolutionaryTrace:P40339 NextBio:975656 Genevestigator:P40339
GermOnline:YOL094C Uniprot:P40339
Length = 323
Score = 293 (108.2 bits), Expect = 5.3e-29, Sum P(2) = 5.3e-29
Identities = 62/158 (39%), Positives = 94/158 (59%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ + + +PH++ G PG GKTT++ A +L ++ + VLELNASDDRGI +VR
Sbjct: 32 RLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADG-VLELNASDDRGIDVVR 90
Query: 356 DQIFQFASTKT-MHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
+QI FA K + +K++ILDEAD+MT AQ ALRR +E ++ + RF CN +KI
Sbjct: 91 NQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKI 150
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRL----DYDDISFFN 448
+QSRC R+ L ++ RL +D+ + N
Sbjct: 151 IEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTN 188
Score = 184 (69.8 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 56/167 (33%), Positives = 87/167 (52%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
VEKYRP L ++V +++ TI+ + + D + I G + + A
Sbjct: 12 VEKYRPQVLSDIVGNKE---TIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 68
Query: 163 NSARDKLEVLELNASDDRGIGIVRDQIFQFASTKT-MHKSSYKLIILDEADAMTNDAQNA 221
S D VLELNASDDRGI +VR+QI FA K + +K++ILDEAD+MT AQ A
Sbjct: 69 RSYADG--VLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQA 126
Query: 222 LRRKLPVTPDGKKAIIDLSDGDMRKVLNILQS-AATAHADEVNEDTV 267
LRR + + + + + + K++ LQS A +++++ V
Sbjct: 127 LRRTMELYSNSTRFAFACNQSN--KIIEPLQSRCAILRYSKLSDEDV 171
Score = 179 (68.1 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 41/126 (32%), Positives = 68/126 (53%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ + RF CN +KI +QSRC R+ L ++ RL +I+ E V T DG
Sbjct: 131 MELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDG 190
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDI 120
+AII ++GDMR+ +N LQS H VN D +F + V+ P + +++ ++
Sbjct: 191 LEAIIFTAEGDMRQAINNLQSTVAGHG-LVNADNVFKI----VDSPHPLIVKKMLLASNL 245
Query: 121 ISTIEI 126
+I+I
Sbjct: 246 EDSIQI 251
Score = 55 (24.4 bits), Expect = 5.3e-29, Sum P(2) = 5.3e-29
Identities = 13/63 (20%), Positives = 33/63 (52%)
Query: 464 GLALTDILTEISLLVHRL-EIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSA 522
G + DI+T + L ++ ES+ ++++ ++ R+ G +QL++++A +
Sbjct: 260 GYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHKL 319
Query: 523 RDK 525
+K
Sbjct: 320 NNK 322
>CGD|CAL0000922 [details] [associations]
symbol:RFC4 species:5476 "Candida albicans" [GO:0003689 "DNA
clamp loader activity" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 CGD:CAL0000922
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000032 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
HOGENOM:HOG000224155 Pfam:PF08542 RefSeq:XP_719417.1
ProteinModelPortal:Q5ACI4 SMR:Q5ACI4 STRING:Q5ACI4 GeneID:3638994
KEGG:cal:CaO19.7658 Uniprot:Q5ACI4
Length = 323
Score = 298 (110.0 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
Identities = 62/145 (42%), Positives = 89/145 (61%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ + + +P+++ G PG GKTT+I A +L ++ +ELNASDDRGI +VR
Sbjct: 32 RLKLIVQDGNMPNMIISGLPGIGKTTSIHCLAYELLGDEHYHQATMELNASDDRGIDVVR 91
Query: 356 DQIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
++I QFA TK ++ K+IILDEAD+MT AQ ALRR IE ++ RF CN SKI
Sbjct: 92 NKIKQFAQTKISLPPGRQKIIILDEADSMTPGAQQALRRTIEIYSNTTRFAFACNQSSKI 151
Query: 415 PPAIQSRCTRFRFGPLDSSLIMSRL 439
+QSRC R+ L +++RL
Sbjct: 152 IEPLQSRCAILRYNRLSDEEVLARL 176
Score = 186 (70.5 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 55/173 (31%), Positives = 90/173 (52%)
Query: 97 TLLVSRVEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLS 156
TL + VEKYRP L+++V +++ + +++ ++ D + I G + I
Sbjct: 6 TLELPWVEKYRPKKLEDIVGNEETVERLKL---IVQDGNMPNMIISGLPGIGKTTSIHCL 62
Query: 157 ALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSYKLIILDEADAMT 215
A +ELNASDDRGI +VR++I QFA TK ++ K+IILDEAD+MT
Sbjct: 63 AY-ELLGDEHYHQATMELNASDDRGIDVVRNKIKQFAQTKISLPPGRQKIIILDEADSMT 121
Query: 216 NDAQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQS-AATAHADEVNEDTV 267
AQ ALRR + + + + + K++ LQS A + ++++ V
Sbjct: 122 PGAQQALRRTIEIYSNTTRFAFACNQSS--KIIEPLQSRCAILRYNRLSDEEV 172
Score = 158 (60.7 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 34/99 (34%), Positives = 54/99 (54%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE ++ RF CN SKI +QSRC R+ L +++RL +I+ E V +G
Sbjct: 132 IEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNRLSDEEVLARLLEIIKMEDVKYNTEG 191
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL 99
+A+I ++GDMR+ +N LQS VN+ +F ++
Sbjct: 192 LQALIFTAEGDMRQAINNLQSTVAGFGF-VNDVNVFKIV 229
Score = 46 (21.3 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 109 STLDELVSHQDIISTI-EIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
S +D + S + TI I E +D++ ++ R+ G + +QL L A
Sbjct: 266 SAIDIVTSTFKVAKTIPNISEQKRLDVIKEIGFAHMRVLEGVATYLQLCGLYA 318
Score = 43 (20.2 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 464 GLALTDILTEISLLVHRL-EIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 517
G + DI+T + + I E +D++ ++ R+ G + +QL L A
Sbjct: 264 GYSAIDIVTSTFKVAKTIPNISEQKRLDVIKEIGFAHMRVLEGVATYLQLCGLYA 318
>RGD|1593197 [details] [associations]
symbol:LOC367042 "similar to Activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit) (A1 37 kDa subunit) (RF-C 37
kDa subunit) (RFC37)" species:10116 "Rattus norvegicus" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1593197
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000074917
OrthoDB:EOG4Q58PN IPI:IPI00780490 Ensembl:ENSRNOT00000060753
Uniprot:D4ADU1
Length = 346
Score = 312 (114.9 bits), Expect = 1.8e-27, P = 1.8e-27
Identities = 68/146 (46%), Positives = 99/146 (67%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ A F VLELNASD+RGI V++
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPALFRLRVLELNASDERGIQKVKN 121
Query: 357 QI-FQFASTKTMHKS--SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSK 413
+ +++ K S+K +ILDEAD+MT+ A+ ALR+ +EK + RFC+ CNY+S+
Sbjct: 122 FAQLTVSGSRSDGKPCPSFKTVILDEADSMTSAAR-ALRQTMEKESKTTRFCLFCNYVSR 180
Query: 414 IPPAIQSRCTRFRFGPLDSSLIMSRL 439
I + SR ++F F PL + RL
Sbjct: 181 IIEPLTSRRSKFCFTPLSDKIQQKRL 206
Score = 155 (59.6 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 35/96 (36%), Positives = 54/96 (56%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK + RFC+ CNY+S+I + SR ++F F PL + RL + E+E V + D
Sbjct: 162 MEKESKTTRFCLFCNYVSRIIEPLTSRRSKFCFTPLSDKIQQKRLLGIAEKENVKLGDD- 220
Query: 61 KKAIIDLSDGDMRKVLNILQSAAT-AHADEVNEDTI 95
++ +S+GD+RK + +LQSA E ED I
Sbjct: 221 ---LVTISEGDLRKAIPLLQSATRPTGGKETPEDVI 253
Score = 144 (55.7 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 46/131 (35%), Positives = 77/131 (58%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +DE+ +++++ ++ +S L+ +D+ L G + S ++AA
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLK--KS------LEGADLPNLLFYGPPGTGKTSTILAAA 92
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQI-FQFASTKTMHKS--SYKLIILDEADAMT 215
F A +L VLELNASD+RGI V++ + +++ K S+K +ILDEAD+MT
Sbjct: 93 RELFGPALFRLRVLELNASDERGIQKVKNFAQLTVSGSRSDGKPCPSFKTVILDEADSMT 152
Query: 216 NDAQNALRRKL 226
+ A+ ALR+ +
Sbjct: 153 SAAR-ALRQTM 162
Score = 65 (27.9 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 236 IIDLSDGDMRKVLNILQSAAT-AHADEVNEDTVYNSVGYPTKTEITNIL 283
++ +S+GD+RK + +LQSA E ED + + G I I+
Sbjct: 221 LVTISEGDLRKAIPLLQSATRPTGGKETPEDVITDIAGVTPAATIEGIV 269
>GENEDB_PFALCIPARUM|PFL2005w [details] [associations]
symbol:PFL2005w "replication factor c subunit 4"
species:5833 "Plasmodium falciparum" [GO:0006260 "DNA replication"
evidence=ISS] [GO:0005663 "DNA replication factor C complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 296 (109.3 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 63/144 (43%), Positives = 87/144 (60%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ I +P+LL G PGTGKTT+IL A ++ Q VLELNASDDRGI ++RD
Sbjct: 40 LKSIITSGNMPNLLLAGAPGTGKTTSILCLASEMLGN-QAKKAVLELNASDDRGINVIRD 98
Query: 357 QIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+I FA ++ +K+IILDE D+MT AQ +LRRI+E ++ RF + CN KI
Sbjct: 99 RIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKII 158
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
A+QSRC R+ L ++ R+
Sbjct: 159 DALQSRCAIIRYFKLSDDQVLKRI 182
Score = 213 (80.0 bits), Expect = 6.4e-15, P = 6.4e-15
Identities = 61/189 (32%), Positives = 102/189 (53%)
Query: 90 VNEDTIFTLLVSR-----VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYR 144
+ ED+ L+ R +EKYRP LDE+V + +I+T++ S++ M ++
Sbjct: 1 MEEDSFKNRLLKRNIDIWIEKYRPEFLDEVVGNPFVINTLK---SIITSG--NMPNLLLA 55
Query: 145 LAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSY 203
A GT + + L + + K VLELNASDDRGI ++RD+I FA ++ +
Sbjct: 56 GAPGTGKTTSILCLASEMLGNQAKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKH 115
Query: 204 KLIILDEADAMTNDAQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQS-AATAHADEV 262
K+IILDE D+MT AQ +LRR + + D + + + + K+++ LQS A ++
Sbjct: 116 KIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSE--KIIDALQSRCAIIRYFKL 173
Query: 263 NEDTVYNSV 271
++D V +
Sbjct: 174 SDDQVLKRI 182
Score = 165 (63.1 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 48/167 (28%), Positives = 82/167 (49%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI A+QSRC R+ L ++ R+ + + E + T DG
Sbjct: 138 MELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKYTDDG 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
A+ ++DGD+RK +N LQS A + +N++ + L + + P ++ L+ H
Sbjct: 198 LDALTFIADGDLRKAVNCLQSTY-AGLEVINKENV--LHICDIPS--PERIENLLKHCVN 252
Query: 118 QDIISTIEIPESML------VDLVLKMSDIEYRLAAGTSEKIQLSAL 158
+ +I SM+ D+ L S++ R G SE IQ+ L
Sbjct: 253 SEWKKAHDIAYSMIKEGHTPYDISLTSSNVLRRFNIG-SEVIQIEFL 298
>UNIPROTKB|Q8I512 [details] [associations]
symbol:PFL2005w "Replication factor C subunit 4"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 296 (109.3 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 63/144 (43%), Positives = 87/144 (60%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ I +P+LL G PGTGKTT+IL A ++ Q VLELNASDDRGI ++RD
Sbjct: 40 LKSIITSGNMPNLLLAGAPGTGKTTSILCLASEMLGN-QAKKAVLELNASDDRGINVIRD 98
Query: 357 QIFQFASTK-TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+I FA ++ +K+IILDE D+MT AQ +LRRI+E ++ RF + CN KI
Sbjct: 99 RIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKII 158
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRL 439
A+QSRC R+ L ++ R+
Sbjct: 159 DALQSRCAIIRYFKLSDDQVLKRI 182
Score = 213 (80.0 bits), Expect = 6.4e-15, P = 6.4e-15
Identities = 61/189 (32%), Positives = 102/189 (53%)
Query: 90 VNEDTIFTLLVSR-----VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYR 144
+ ED+ L+ R +EKYRP LDE+V + +I+T++ S++ M ++
Sbjct: 1 MEEDSFKNRLLKRNIDIWIEKYRPEFLDEVVGNPFVINTLK---SIITSG--NMPNLLLA 55
Query: 145 LAAGTSEKIQLSALIAAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK-TMHKSSY 203
A GT + + L + + K VLELNASDDRGI ++RD+I FA ++ +
Sbjct: 56 GAPGTGKTTSILCLASEMLGNQAKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKH 115
Query: 204 KLIILDEADAMTNDAQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQS-AATAHADEV 262
K+IILDE D+MT AQ +LRR + + D + + + + K+++ LQS A ++
Sbjct: 116 KIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSE--KIIDALQSRCAIIRYFKL 173
Query: 263 NEDTVYNSV 271
++D V +
Sbjct: 174 SDDQVLKRI 182
Score = 165 (63.1 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 48/167 (28%), Positives = 82/167 (49%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI A+QSRC R+ L ++ R+ + + E + T DG
Sbjct: 138 MELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKYTDDG 197
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH--- 117
A+ ++DGD+RK +N LQS A + +N++ + L + + P ++ L+ H
Sbjct: 198 LDALTFIADGDLRKAVNCLQSTY-AGLEVINKENV--LHICDIPS--PERIENLLKHCVN 252
Query: 118 QDIISTIEIPESML------VDLVLKMSDIEYRLAAGTSEKIQLSAL 158
+ +I SM+ D+ L S++ R G SE IQ+ L
Sbjct: 253 SEWKKAHDIAYSMIKEGHTPYDISLTSSNVLRRFNIG-SEVIQIEFL 298
>UNIPROTKB|C9JTT7 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925397
ProteinModelPortal:C9JTT7 SMR:C9JTT7 STRING:C9JTT7
Ensembl:ENST00000447345 ArrayExpress:C9JTT7 Bgee:C9JTT7
Uniprot:C9JTT7
Length = 167
Score = 249 (92.7 bits), Expect = 1.6e-20, P = 1.6e-20
Identities = 54/104 (51%), Positives = 75/104 (72%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QIFQFAS-TKTMHKSS------YKLIILDEADAMTNDAQNALRR 393
++ FA T + +S +K++ILDEAD+MT+ AQ ALRR
Sbjct: 122 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRR 165
Score = 174 (66.3 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 50/135 (37%), Positives = 80/135 (59%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +DE+ +++++ ++ +S L+ +D+ L G + S ++AA
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLK--KS------LEGADLPNLLFYGPPGTGKTSTILAAA 92
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQIFQFAS-TKTMHKSS------YKLIILDEA 211
F +L VLELNASD+RGI +VR+++ FA T + +S +K++ILDEA
Sbjct: 93 RELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEA 152
Query: 212 DAMTNDAQNALRRKL 226
D+MT+ AQ ALRR +
Sbjct: 153 DSMTSAAQAALRRTM 167
>TAIR|locus:2180315 [details] [associations]
symbol:EMB2775 "EMBRYO DEFECTIVE 2775" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
HOGENOM:HOG000224153 OMA:TRIMCLL HSSP:Q8U4J3 EMBL:AY074381
EMBL:AY091236 IPI:IPI00528406 RefSeq:NP_198126.1 UniGene:At.19785
ProteinModelPortal:Q8VXX4 SMR:Q8VXX4 STRING:Q8VXX4 PaxDb:Q8VXX4
PRIDE:Q8VXX4 EnsemblPlants:AT5G27740.1 GeneID:832836
KEGG:ath:AT5G27740 TAIR:At5g27740 InParanoid:Q8VXX4
PhylomeDB:Q8VXX4 ProtClustDB:CLSN2687133 ArrayExpress:Q8VXX4
Genevestigator:Q8VXX4 Uniprot:Q8VXX4
Length = 354
Score = 150 (57.9 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 37/108 (34%), Positives = 62/108 (57%)
Query: 341 LELNASD----DRGIGIVRDQIFQFASTK---TMHKSSYKLIILDEADAMTNDAQNALRR 393
+EL SD DR I V++ I + A + T K YK+++L+E D ++ +AQ++LRR
Sbjct: 95 VELTPSDAGFQDRYI--VQEIIKEMAKNRPIDTKGKKGYKVLVLNEVDKLSREAQHSLRR 152
Query: 394 IIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+EK++++ R + CN SK+ AI+SRC R I+ L++
Sbjct: 153 TMEKYSSSCRLILCCNSSSKVTEAIKSRCLNVRINAPSQEEIVKVLEF 200
Score = 114 (45.2 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLY 331
D+ K+ + + E + PHLLFYGP G+GK T I+A +++Y
Sbjct: 20 DIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIY 59
>UNIPROTKB|C9JXZ7 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524 EMBL:AC112907
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00795756
ProteinModelPortal:C9JXZ7 SMR:C9JXZ7 STRING:C9JXZ7
Ensembl:ENST00000427785 HOGENOM:HOG000185875 ArrayExpress:C9JXZ7
Bgee:C9JXZ7 Uniprot:C9JXZ7
Length = 123
Score = 187 (70.9 bits), Expect = 8.9e-14, P = 8.9e-14
Identities = 35/62 (56%), Positives = 49/62 (79%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRD 356
+ + ++ +LP+LLFYGPPGTGKT+TILA AR+L+ F VLELNASD+RGI +VR+
Sbjct: 62 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 121
Query: 357 QI 358
++
Sbjct: 122 KV 123
Score = 111 (44.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 31/91 (34%), Positives = 53/91 (58%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAA- 161
VEKYRP +DE+ +++++ ++ +S L+ +D+ L G + S ++AA
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLK--KS------LEGADLPNLLFYGPPGTGKTSTILAAA 92
Query: 162 ---FNSARDKLEVLELNASDDRGIGIVRDQI 189
F +L VLELNASD+RGI +VR+++
Sbjct: 93 RELFGPELFRLRVLELNASDERGIQVVREKV 123
>RGD|1306832 [details] [associations]
symbol:Rfc3 "replication factor C (activator 1) 3" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005663 "DNA replication factor C complex"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA;ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0016887 "ATPase activity"
evidence=IEA;ISO] [GO:0046683 "response to organophosphorus"
evidence=IEA;ISO] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 RGD:1306832 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756 GO:GO:0046683
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:BC088281
EMBL:CH474108 IPI:IPI00189913 RefSeq:NP_001009629.1 UniGene:Rn.3711
STRING:Q5M830 Ensembl:ENSRNOT00000001444 GeneID:288414
KEGG:rno:288414 UCSC:RGD:1306832 InParanoid:Q5M830 NextBio:628070
Genevestigator:Q5M830 Uniprot:Q5M830
Length = 356
Score = 152 (58.6 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 33/91 (36%), Positives = 54/91 (59%)
Query: 341 LELNASDDRGIG--IVRDQIFQFASTKTMHKSS---YKLIILDEADAMTNDAQNALRRII 395
LE+N SD ++++ + A ++ + SS +K+++L E D +T DAQ+ALRR +
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRDFKVVLLTEVDKLTKDAQHALRRTM 152
Query: 396 EKFTTNVRFCIICNYLSKIPPAIQSRCTRFR 426
EK+ + R + CN SK+ P I+SRC R
Sbjct: 153 EKYMSTCRLILCCNSTSKVIPPIRSRCLAIR 183
Score = 86 (35.3 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLY 331
++ + + PHLL YGP G GK T I+ R+LY
Sbjct: 25 QLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Score = 47 (21.6 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 103 VEKYRPSTLDELVSHQD 119
V+KYRPS+L L H++
Sbjct: 5 VDKYRPSSLARLDYHKE 21
>MGI|MGI:1916513 [details] [associations]
symbol:Rfc3 "replication factor C (activator 1) 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 MGI:MGI:1916513 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756
GO:GO:0046683 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:BC026795
IPI:IPI00665571 RefSeq:NP_081285.1 UniGene:Mm.12553
ProteinModelPortal:Q8R323 SMR:Q8R323 IntAct:Q8R323 STRING:Q8R323
PhosphoSite:Q8R323 PaxDb:Q8R323 PRIDE:Q8R323
Ensembl:ENSMUST00000038131 GeneID:69263 KEGG:mmu:69263
InParanoid:Q8R323 NextBio:328993 Bgee:Q8R323 CleanEx:MM_RFC3
Genevestigator:Q8R323 GermOnline:ENSMUSG00000033970 Uniprot:Q8R323
Length = 356
Score = 151 (58.2 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 33/91 (36%), Positives = 54/91 (59%)
Query: 341 LELNASDDRGIG--IVRDQIFQFASTKTMHKSS---YKLIILDEADAMTNDAQNALRRII 395
LE+N SD ++++ + A ++ + SS +K+++L E D +T DAQ+ALRR +
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRDFKVVLLTEVDKLTKDAQHALRRTM 152
Query: 396 EKFTTNVRFCIICNYLSKIPPAIQSRCTRFR 426
EK+ + R + CN SK+ P I+SRC R
Sbjct: 153 EKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183
Score = 86 (35.3 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLY 331
++ + + PHLL YGP G GK T I+ R+LY
Sbjct: 25 QLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Score = 47 (21.6 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 103 VEKYRPSTLDELVSHQD 119
V+KYRPS+L L H++
Sbjct: 5 VDKYRPSSLARLDYHKE 21
>UNIPROTKB|F1P3C0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0046683 "response
to organophosphorus" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AADN02005263 IPI:IPI00593478 PRIDE:F1P3C0
Ensembl:ENSGALT00000027564 Uniprot:F1P3C0
Length = 356
Score = 145 (56.1 bits), Expect = 3.2e-13, Sum P(4) = 3.2e-13
Identities = 33/91 (36%), Positives = 54/91 (59%)
Query: 341 LELNASD--DRGIGIVRDQIFQFASTKTMHKSS---YKLIILDEADAMTNDAQNALRRII 395
LE+N SD + ++++ + A ++ + S+ +K+++L E D +T DAQ+ALRR +
Sbjct: 93 LEVNPSDAGNNDRVVIQELLKTVAQSQQLETSTQRDFKVVLLTEVDKLTKDAQHALRRTM 152
Query: 396 EKFTTNVRFCIICNYLSKIPPAIQSRCTRFR 426
EK+ R + CN +SKI IQSRC R
Sbjct: 153 EKYMATCRLILCCNSISKIIGPIQSRCLSVR 183
Score = 85 (35.0 bits), Expect = 3.2e-13, Sum P(4) = 3.2e-13
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLY 331
++ + + PHLL YGP G GK T I+ R+LY
Sbjct: 25 QLRSLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY 60
Score = 48 (22.0 bits), Expect = 3.2e-13, Sum P(4) = 3.2e-13
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 103 VEKYRPSTLDELVSHQD 119
V+KYRPS L L H++
Sbjct: 5 VDKYRPSALSRLDFHRE 21
Score = 39 (18.8 bits), Expect = 3.2e-13, Sum P(4) = 3.2e-13
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 476 LLVHRLEIPESMLVDLVLKMSDI-EYRLAAGTSEKIQLSALIAAF 519
LL L + L V +M+ E+RL G+ L A +A F
Sbjct: 295 LLTELLNNCDGQLKGEVAQMAAFYEHRLQLGSKAIYHLEAFVAKF 339
>UNIPROTKB|Q2TBV1 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0046683
"response to organophosphorus" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 KO:K10756 GO:GO:0046683
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 EMBL:BC109606
IPI:IPI00713322 RefSeq:NP_001033636.1 UniGene:Bt.16980
ProteinModelPortal:Q2TBV1 STRING:Q2TBV1 PRIDE:Q2TBV1
Ensembl:ENSBTAT00000014278 GeneID:515602 KEGG:bta:515602 CTD:5983
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153
HOVERGEN:HBG040509 InParanoid:Q2TBV1 OMA:TRIMCLL OrthoDB:EOG4T4CVP
NextBio:20871915 Uniprot:Q2TBV1
Length = 356
Score = 151 (58.2 bits), Expect = 3.6e-13, Sum P(3) = 3.6e-13
Identities = 33/91 (36%), Positives = 54/91 (59%)
Query: 341 LELNASDDRGIG--IVRDQIFQFASTKTMHKSS---YKLIILDEADAMTNDAQNALRRII 395
LE+N SD ++++ + A ++ + SS +K+++L E D +T DAQ+ALRR +
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQKDFKVVLLTEVDKLTKDAQHALRRTM 152
Query: 396 EKFTTNVRFCIICNYLSKIPPAIQSRCTRFR 426
EK+ + R + CN SK+ P I+SRC R
Sbjct: 153 EKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183
Score = 86 (35.3 bits), Expect = 3.6e-13, Sum P(3) = 3.6e-13
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLY 331
++ + + PHLL YGP G GK T I+ R+LY
Sbjct: 25 QLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Score = 45 (20.9 bits), Expect = 3.6e-13, Sum P(3) = 3.6e-13
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 103 VEKYRPSTLDELVSHQD 119
V+KYRP +L +L H++
Sbjct: 5 VDKYRPCSLGQLDYHKE 21
>FB|FBgn0028700 [details] [associations]
symbol:RfC38 "Replication factor C 38kD subunit" species:7227
"Drosophila melanogaster" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0003689 "DNA clamp loader activity" evidence=ISS]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0022008
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AF160912 UniGene:Dm.19818
ProteinModelPortal:Q7KLW6 IntAct:Q7KLW6 STRING:Q7KLW6 PaxDb:Q7KLW6
PRIDE:Q7KLW6 FlyBase:FBgn0028700 InParanoid:Q7KLW6
OrthoDB:EOG4C2FS4 ArrayExpress:Q7KLW6 Bgee:Q7KLW6 Uniprot:Q7KLW6
Length = 395
Score = 153 (58.9 bits), Expect = 4.1e-13, Sum P(3) = 4.1e-13
Identities = 43/106 (40%), Positives = 59/106 (55%)
Query: 341 LELNASD----DRGIGIVRDQIFQFASTKTMHKSS---YKLIILDEADAMTNDAQNALRR 393
LE+N SD DR + I D I Q A T + S +K+I++ E D +T DAQ+ALRR
Sbjct: 132 LEVNPSDAGMYDRTVVI--DLIKQVAQTHQIEISGQREFKVIVISEGDELTKDAQHALRR 189
Query: 394 IIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+EK+ R I N S+I PAI+SRC R + + I+S L
Sbjct: 190 TMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSIL 235
Score = 113 (44.8 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 27/87 (31%), Positives = 48/87 (55%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+EK+ R I N S+I PAI+SRC R + + I+S L ++E + + +
Sbjct: 191 MEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNETEIVSILQNTCKREGLALPVEL 250
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHA 87
K ++D S+ ++R+ L +L++A A A
Sbjct: 251 AKRVVDKSERNLRRALLMLEAAKVAKA 277
Score = 92 (37.4 bits), Expect = 4.1e-13, Sum P(3) = 4.1e-13
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLY 331
D + +++ PHL+FYGP G GK T I+ R++Y
Sbjct: 60 DQAENLRNLCKQSDFPHLMFYGPSGAGKKTRIMCLLREMY 99
Score = 51 (23.0 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 139 SDIEYRLAAGTSEKIQLSALIAAFNSARDKLEVLELNASDD 179
++ E+R+ +G L A +A F + K + EL+ +DD
Sbjct: 355 TEYEHRMQSGAKHIFHLEAFVAQFMNIYKKF-LSELDMTDD 394
Score = 39 (18.8 bits), Expect = 4.1e-13, Sum P(3) = 4.1e-13
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 496 SDIEYRLAAGTSEKIQLSALIAAF 519
++ E+R+ +G L A +A F
Sbjct: 355 TEYEHRMQSGAKHIFHLEAFVAQF 378
>DICTYBASE|DDB_G0293702 [details] [associations]
symbol:rfc3 "replication factor C subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0293702 GO:GO:0005634
GenomeReviews:CM000155_GR GO:GO:0000166 GO:GO:0003677 GO:GO:0006298
KO:K10756 GO:GO:0017111 EMBL:AAFI02000218 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 OMA:TRIMCLL RefSeq:XP_628996.1
HSSP:P38251 ProteinModelPortal:Q54BN3 STRING:Q54BN3 PRIDE:Q54BN3
EnsemblProtists:DDB0232232 GeneID:8629280 KEGG:ddi:DDB_G0293702
ProtClustDB:CLSZ2429230 Uniprot:Q54BN3
Length = 347
Score = 125 (49.1 bits), Expect = 6.5e-13, Sum P(4) = 6.5e-13
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 371 SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFR 426
++K++IL+E D ++ DAQ+ALRR +EK+ T R + C+ +K+ I+SRC R
Sbjct: 128 AFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLGIR 183
Score = 97 (39.2 bits), Expect = 6.5e-13, Sum P(4) = 6.5e-13
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELN 344
D+ + I + PHLL YGP G GK T ILA +++Y NA+ L+++
Sbjct: 20 DISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYGP---NALKLKID 69
Score = 54 (24.1 bits), Expect = 6.5e-13, Sum P(4) = 6.5e-13
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 103 VEKYRPSTLDELVSHQDI 120
++KY+P++LD++ H DI
Sbjct: 4 IDKYKPTSLDKMDYHNDI 21
Score = 41 (19.5 bits), Expect = 6.5e-13, Sum P(4) = 6.5e-13
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 482 EIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDK 525
++ +M +++ S E+R G+ L A IA F S K
Sbjct: 301 KLDHNMKFEIIHWASYYEHRSQIGSKPIFHLEAFIAKFMSVYKK 344
>WB|WBGene00004339 [details] [associations]
symbol:rfc-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003677 GO:GO:0006260 GO:GO:0040011
GO:GO:0006974 GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 144 (55.7 bits), Expect = 7.2e-13, Sum P(3) = 7.2e-13
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 353 IVRDQIFQFASTKTMHKSS---YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+V+D + + A T + +S +K+++L EAD++T DAQ+ LRR +EK+ N + + C
Sbjct: 109 VVQDLVKEMAQTSQIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCE 168
Query: 410 YLSKIPPAIQSRC 422
LS+I +QSRC
Sbjct: 169 SLSRIIEPLQSRC 181
Score = 104 (41.7 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 46/171 (26%), Positives = 87/171 (50%)
Query: 151 EKIQLSALIAAFNS-ARDKLEVLELNAS-------DDRGIG---IVRDQIFQFASTKTMH 199
EK QL ++ +F S + KLE+ ++++ D GI +V+D + + A T +
Sbjct: 67 EKTQL--IMKSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEMAQTSQIE 124
Query: 200 KSS---YKLIILDEADAMTNDAQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAAT 256
+S +K+++L EAD++T DAQ+ LRR + + K + LS + +++ LQS
Sbjct: 125 STSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIV--LSCESLSRIIEPLQSRCI 182
Query: 257 AHADEVNEDTVYNSVGYPTKTEITNILRWLLN-ESMDLCYKI-NRFIDENE 305
+N V PT ++T +LR ++ ES L + + ++++E
Sbjct: 183 I----IN-------VPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEKSE 222
Score = 84 (34.6 bits), Expect = 7.2e-13, Sum P(3) = 7.2e-13
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 299 RFIDENELPHLLFYGPPGTGKTTTILACARKLY 331
+F+ + +PHLLF GP G GK T I R+LY
Sbjct: 30 KFLSADCMPHLLFCGPSGAGKKTRIKCLLRELY 62
Score = 52 (23.4 bits), Expect = 7.2e-13, Sum P(3) = 7.2e-13
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 476 LLVHRL-EIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 519
LL H L + P + ++V + + E+RL G L +AAF
Sbjct: 298 LLEHLLPKCPPQIAREVVSEAAKFEHRLVLGQKAIFHLEGFVAAF 342
Score = 42 (19.8 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 388 QNALRRIIEKFTTNVRFCII 407
+N L++I+EK N+R I+
Sbjct: 211 ENVLQKIVEKSEGNLRRAIL 230
>UNIPROTKB|Q18547 [details] [associations]
symbol:rfc-3 "Protein RFC-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792 GO:GO:0040010
GO:GO:0003677 GO:GO:0006260 GO:GO:0040011 GO:GO:0006974
GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 144 (55.7 bits), Expect = 7.2e-13, Sum P(3) = 7.2e-13
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 353 IVRDQIFQFASTKTMHKSS---YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+V+D + + A T + +S +K+++L EAD++T DAQ+ LRR +EK+ N + + C
Sbjct: 109 VVQDLVKEMAQTSQIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCE 168
Query: 410 YLSKIPPAIQSRC 422
LS+I +QSRC
Sbjct: 169 SLSRIIEPLQSRC 181
Score = 104 (41.7 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 46/171 (26%), Positives = 87/171 (50%)
Query: 151 EKIQLSALIAAFNS-ARDKLEVLELNAS-------DDRGIG---IVRDQIFQFASTKTMH 199
EK QL ++ +F S + KLE+ ++++ D GI +V+D + + A T +
Sbjct: 67 EKTQL--IMKSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEMAQTSQIE 124
Query: 200 KSS---YKLIILDEADAMTNDAQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAAT 256
+S +K+++L EAD++T DAQ+ LRR + + K + LS + +++ LQS
Sbjct: 125 STSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIV--LSCESLSRIIEPLQSRCI 182
Query: 257 AHADEVNEDTVYNSVGYPTKTEITNILRWLLN-ESMDLCYKI-NRFIDENE 305
+N V PT ++T +LR ++ ES L + + ++++E
Sbjct: 183 I----IN-------VPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEKSE 222
Score = 84 (34.6 bits), Expect = 7.2e-13, Sum P(3) = 7.2e-13
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 299 RFIDENELPHLLFYGPPGTGKTTTILACARKLY 331
+F+ + +PHLLF GP G GK T I R+LY
Sbjct: 30 KFLSADCMPHLLFCGPSGAGKKTRIKCLLRELY 62
Score = 52 (23.4 bits), Expect = 7.2e-13, Sum P(3) = 7.2e-13
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 476 LLVHRL-EIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 519
LL H L + P + ++V + + E+RL G L +AAF
Sbjct: 298 LLEHLLPKCPPQIAREVVSEAAKFEHRLVLGQKAIFHLEGFVAAF 342
Score = 42 (19.8 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 388 QNALRRIIEKFTTNVRFCII 407
+N L++I+EK N+R I+
Sbjct: 211 ENVLQKIVEKSEGNLRRAIL 230
>UNIPROTKB|F1RSR4 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046683 "response to organophosphorus" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AEMK01181220 EMBL:CU076062
Ensembl:ENSSSCT00000010246 Uniprot:F1RSR4
Length = 356
Score = 148 (57.2 bits), Expect = 8.2e-13, Sum P(3) = 8.2e-13
Identities = 32/91 (35%), Positives = 54/91 (59%)
Query: 341 LELNASDDRGIG--IVRDQIFQFASTKTMHKSS---YKLIILDEADAMTNDAQNALRRII 395
LE+N SD ++++ + A ++ + +S +K+++L E D +T DAQ+ALRR +
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQKDFKVVLLTEVDKLTKDAQHALRRTM 152
Query: 396 EKFTTNVRFCIICNYLSKIPPAIQSRCTRFR 426
EK+ + R + CN SK+ P I+SRC R
Sbjct: 153 EKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183
Score = 86 (35.3 bits), Expect = 8.2e-13, Sum P(3) = 8.2e-13
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLY 331
++ + + PHLL YGP G GK T I+ R+LY
Sbjct: 25 QLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Score = 45 (20.9 bits), Expect = 8.2e-13, Sum P(3) = 8.2e-13
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 103 VEKYRPSTLDELVSHQD 119
V+KYRP +L +L H++
Sbjct: 5 VDKYRPCSLGQLDYHKE 21
>UNIPROTKB|H7C5P4 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF48019
EMBL:AC005081 Pfam:PF08542 HGNC:HGNC:9970 ChiTaRS:RFC2
ProteinModelPortal:H7C5P4 Ensembl:ENST00000497430 Uniprot:H7C5P4
Length = 198
Score = 178 (67.7 bits), Expect = 8.4e-13, P = 8.4e-13
Identities = 42/117 (35%), Positives = 65/117 (55%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E ++ RF + CN KI IQSRC R+ L + I++RL VIE+E+V T DG
Sbjct: 14 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDG 73
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSH 117
+AII + GDMR+ LN LQS + +N + +F + ++ P + E++ H
Sbjct: 74 LEAIIFTAQGDMRQALNNLQSTFSGFGF-INSENVFKVC----DEPHPLLVKEMIQH 125
Score = 116 (45.9 bits), Expect = 0.00016, P = 0.00016
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 383 MTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
MT+ AQ ALRR +E ++ RF + CN KI IQSRC R+ L + I++RL
Sbjct: 2 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRL 58
Score = 110 (43.8 bits), Expect = 0.00086, P = 0.00086
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 208 LDEADAMTNDAQNALRR-KLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDT 266
L +A +T N + + ++P T DG +AII + GDMR+ LN LQS + +N +
Sbjct: 49 LTDAQILTR-LMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGF-INSEN 106
Query: 267 VYNSVGYPTKTEITNILRWLLNESMDLCYKI 297
V+ P + +++ +N ++D YKI
Sbjct: 107 VFKVCDEPHPLLVKEMIQHCVNANIDEAYKI 137
>CGD|CAL0004366 [details] [associations]
symbol:RFC5 species:5476 "Candida albicans" [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0003689
"DNA clamp loader activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0004366
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
eggNOG:COG0470 EMBL:AACQ01000031 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_719478.1 ProteinModelPortal:Q5AD38 STRING:Q5AD38
GeneID:3638890 KEGG:cal:CaO19.2029 Uniprot:Q5AD38
Length = 362
Score = 145 (56.1 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 35/102 (34%), Positives = 62/102 (60%)
Query: 333 KAQFNAMV----LELNASD--DRGIGIVRDQIFQFASTKTMH-------KSSYKLIILDE 379
K +FN + LE+ SD + +++D + AST+ + K +K++I++E
Sbjct: 81 KLEFNVLSSSNHLEITPSDMGNNDRVVIQDLLKDVASTEQVDFANQSRAKHRFKIVIINE 140
Query: 380 ADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSR 421
AD+++ DAQ ALRR +EK+++N+R ++CN +S I I+SR
Sbjct: 141 ADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPIKSR 182
Score = 71 (30.1 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 305 ELPHLLFYGPPGTGKTTTILACARKLY 331
+ PHLL YGP G+GK T I +++
Sbjct: 34 DFPHLLVYGPSGSGKKTRIYCTLNEIF 60
Score = 63 (27.2 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 103 VEKYRPSTLDELVSHQDIISTI 124
V+KYRP TLD+L H I +++
Sbjct: 5 VDKYRPRTLDQLTYHDSITNSL 26
>UNIPROTKB|E2R7L0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046683 "response to organophosphorus"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 KO:K10756 GO:GO:0046683 SUPFAM:SSF48019 Pfam:PF08542
CTD:5983 GeneTree:ENSGT00550000075006 OMA:TRIMCLL EMBL:AAEX03014212
RefSeq:XP_534500.3 ProteinModelPortal:E2R7L0
Ensembl:ENSCAFT00000010156 GeneID:477308 KEGG:cfa:477308
NextBio:20852824 Uniprot:E2R7L0
Length = 356
Score = 148 (57.2 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 32/91 (35%), Positives = 54/91 (59%)
Query: 341 LELNASDDRGIG--IVRDQIFQFASTKTMHKSS---YKLIILDEADAMTNDAQNALRRII 395
LE+N SD ++++ + A ++ + +S +K+++L E D +T DAQ+ALRR +
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTM 152
Query: 396 EKFTTNVRFCIICNYLSKIPPAIQSRCTRFR 426
EK+ + R + CN SK+ P I+SRC R
Sbjct: 153 EKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183
Score = 86 (35.3 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLY 331
++ + + PHLL YGP G GK T I+ R+LY
Sbjct: 25 QLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Score = 43 (20.2 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 103 VEKYRPSTLDELVSHQD 119
V+KYRP +L L H++
Sbjct: 5 VDKYRPCSLGRLDYHKE 21
>UNIPROTKB|P40938 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IDA;TAS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006260 "DNA replication"
evidence=IDA;TAS] [GO:0003689 "DNA clamp loader activity"
evidence=TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0046683 "response to organophosphorus" evidence=IEP]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0006200 "ATP catabolic process"
evidence=IDA] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 EMBL:CH471075 KO:K10756 GO:GO:0017111 GO:GO:0046683
GO:GO:0000084 eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722
GO:GO:0000731 Reactome:REACT_383 GO:GO:0006283 GO:GO:0003689
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5983 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:L07541
EMBL:AF484446 EMBL:AL139081 EMBL:AL160394 EMBL:AL161891
EMBL:BC000149 EMBL:CX786577 IPI:IPI00031521 IPI:IPI00373882
PIR:T09573 RefSeq:NP_002906.1 RefSeq:NP_853536.2 UniGene:Hs.115474
ProteinModelPortal:P40938 SMR:P40938 DIP:DIP-36432N IntAct:P40938
MINT:MINT-3015032 STRING:P40938 PhosphoSite:P40938 DMDM:3915601
PaxDb:P40938 PeptideAtlas:P40938 PRIDE:P40938 DNASU:5983
Ensembl:ENST00000380071 Ensembl:ENST00000434425 GeneID:5983
KEGG:hsa:5983 UCSC:uc001uuz.3 GeneCards:GC13P034392 HGNC:HGNC:9971
HPA:HPA030149 MIM:600405 neXtProt:NX_P40938 PharmGKB:PA34340
InParanoid:P40938 PhylomeDB:P40938 ChiTaRS:RFC3 GenomeRNAi:5983
NextBio:23291 ArrayExpress:P40938 Bgee:P40938 CleanEx:HS_RFC3
Genevestigator:P40938 GermOnline:ENSG00000133119 Uniprot:P40938
Length = 356
Score = 148 (57.2 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 32/91 (35%), Positives = 54/91 (59%)
Query: 341 LELNASDDRGIG--IVRDQIFQFASTKTMHKSS---YKLIILDEADAMTNDAQNALRRII 395
LE+N SD ++++ + A ++ + +S +K+++L E D +T DAQ+ALRR +
Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTM 152
Query: 396 EKFTTNVRFCIICNYLSKIPPAIQSRCTRFR 426
EK+ + R + CN SK+ P I+SRC R
Sbjct: 153 EKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183
Score = 86 (35.3 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLY 331
++ + + PHLL YGP G GK T I+ R+LY
Sbjct: 25 QLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Score = 43 (20.2 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 103 VEKYRPSTLDELVSHQD 119
V+KYRP +L L H++
Sbjct: 5 VDKYRPCSLGRLDYHKE 21
>ZFIN|ZDB-GENE-020809-3 [details] [associations]
symbol:rfc3 "replication factor C (activator 1) 3"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-020809-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
Pfam:PF08542 CTD:5983 HOVERGEN:HBG040509 HSSP:Q8U4J3 EMBL:BC042327
IPI:IPI00734824 RefSeq:NP_958865.1 UniGene:Dr.13362
ProteinModelPortal:Q8AW06 STRING:Q8AW06 PRIDE:Q8AW06 GeneID:259256
KEGG:dre:259256 InParanoid:Q8AW06 NextBio:20804713
ArrayExpress:Q8AW06 Bgee:Q8AW06 Uniprot:Q8AW06
Length = 356
Score = 143 (55.4 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 35/97 (36%), Positives = 55/97 (56%)
Query: 341 LELNASDDRGIG--IVRDQIFQFASTKTMHKSS---YKLIILDEADAMTNDAQNALRRII 395
LE+N SD ++++ I A ++ + S+ +K+++L E D +T DAQ+ALRR +
Sbjct: 93 LEVNPSDAGNSDRVVIQELIKTVAQSQQIQSSAQREFKVVLLTEVDRLTKDAQHALRRTM 152
Query: 396 EKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDS 432
EK+ R + CN SK+ I+SRC R PL S
Sbjct: 153 EKYMATCRLILCCNSTSKVIAPIRSRCLAVRV-PLPS 188
Score = 86 (35.3 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLY 331
++ + + PHLL YGP G GK T I+ R+LY
Sbjct: 25 QLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY 60
Score = 45 (20.9 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 103 VEKYRPSTLDELVSHQD 119
V+KYRP++L +L H++
Sbjct: 5 VDKYRPTSLAKLDYHKE 21
>SGD|S000000291 [details] [associations]
symbol:RFC5 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0031390 "Ctf18
RFC-like complex" evidence=IPI] [GO:0003689 "DNA clamp loader
activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IMP;IPI] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA;IMP] [GO:0006298
"mismatch repair" evidence=TAS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031389 "Rad17 RFC-like complex" evidence=IDA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 SGD:S000000291 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:BK006936 GO:GO:0006298 EMBL:X78993
RefSeq:NP_009644.3 GeneID:852383 KEGG:sce:YBR087W KO:K10756
GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
EMBL:Z35956 PDB:1SXJ PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153 OMA:TRIMCLL
OrthoDB:EOG4R273P EMBL:U26031 EMBL:AY693173 PIR:S48257
RefSeq:NP_009648.4 ProteinModelPortal:P38251 SMR:P38251
DIP:DIP-2531N IntAct:P38251 MINT:MINT-480383 STRING:P38251
PaxDb:P38251 PeptideAtlas:P38251 EnsemblFungi:YBR087W GeneID:852387
KEGG:sce:YBR090C CYGD:YBR087w EvolutionaryTrace:P38251
NextBio:971189 Genevestigator:P38251 GermOnline:YBR087W
Uniprot:P38251
Length = 354
Score = 147 (56.8 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 32/81 (39%), Positives = 52/81 (64%)
Query: 356 DQI-FQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
+Q+ FQ + H+ YK +I++EA+++T DAQ ALRR +EK++ N+R ++C+ +S I
Sbjct: 120 EQVDFQDSKDGLAHR--YKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 177
Query: 415 PPAIQSRCTRFRF-GPLDSSL 434
I+SRC R P DS +
Sbjct: 178 IAPIKSRCLLIRCPAPSDSEI 198
Score = 118 (46.6 bits), Expect = 0.00048, P = 0.00048
Identities = 44/173 (25%), Positives = 87/173 (50%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRF-GPLDSSLIMSRLDYVIEQEKVNV-TP 58
+EK++ N+R ++C+ +S I I+SRC R P DS I + L V+ E++ + T
Sbjct: 158 MEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSE-ISTILSDVVTNERIQLETK 216
Query: 59 DGKKAIIDLSDGDMRKVLNILQSAAT-------AHADEVNEDTIFTL--LVSRVEKYRPS 109
D K I S+G++R L +L+S A + + + D I + L ++ K R
Sbjct: 217 DILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKER-- 274
Query: 110 TLDELVSHQDIISTIE---IPESMLV-DLVLKMSDIEYRLAAGTSEKIQLSAL 158
+++ L+ + ++ + IP ++++ +L + D+E S I+ S++
Sbjct: 275 SVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSV 327
Score = 82 (33.9 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 287 LNESMDLCYKINRFIDE-NELPHLLFYGPPGTGKTTTILACARKLY 331
L+ + +L + D+ +LPHLL YGP GTGK T +A ++
Sbjct: 16 LSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61
Score = 47 (21.6 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAG---TSEKIQLSALI 159
V+KYRP +L+ L SH + ++ + L L + D+ + L G T +K + AL+
Sbjct: 5 VDKYRPKSLNAL-SHNEELT------NFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALL 57
Query: 160 AA-FNSA--RDKLEVLELNASDDR 180
+ F R K++V + + +R
Sbjct: 58 ESIFGPGVYRLKIDVRQFVTASNR 81
>ASPGD|ASPL0000001589 [details] [associations]
symbol:AN6300 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AACD01000107 EMBL:BN001301 KO:K10756 GO:GO:0017111
eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224153
OMA:TRIMCLL OrthoDB:EOG4R273P RefSeq:XP_663904.1
ProteinModelPortal:Q5AZI0 STRING:Q5AZI0
EnsemblFungi:CADANIAT00006689 GeneID:2870977 KEGG:ani:AN6300.2
Uniprot:Q5AZI0
Length = 352
Score = 130 (50.8 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
Identities = 35/101 (34%), Positives = 58/101 (57%)
Query: 328 RKLYTKAQFNAMVLELNASD----DRGIGIVRDQIFQFASTKTMH---KSSYKLIILDEA 380
RKL + LE+ SD DR + V++ + + A T+ + K +K+++++EA
Sbjct: 80 RKLEFNIVSSVYHLEITPSDVGTYDRVV--VQELLKEIAQTQQVDLSAKQRFKVVVINEA 137
Query: 381 DAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSR 421
D +T DAQ ALRR +EK++ N+R ++ N S I I+SR
Sbjct: 138 DHLTRDAQAALRRTMEKYSPNMRLILLANSTSNIIAPIRSR 178
Score = 86 (35.3 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLY 331
+L ++ + PHLL YGP G GK T +A ++LY
Sbjct: 21 ELSARLRSLAQSGDFPHLLMYGPSGAGKKTRTIATLKELY 60
Score = 46 (21.3 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 103 VEKYRPSTLDELVSHQDI 120
V+K+RP +LD L H ++
Sbjct: 5 VDKHRPRSLDTLSYHHEL 22
Score = 38 (18.4 bits), Expect = 2.8e-11, Sum P(4) = 2.8e-11
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 492 VLKMSDI-EYRLAAGTSEKIQLSALIAAF 519
V+K S E+R+ G+ L A +A F
Sbjct: 311 VIKWSAFYEHRITQGSKVIFHLEAFVAKF 339
>GENEDB_PFALCIPARUM|PF11_0117 [details] [associations]
symbol:PF11_0117 "replication factor C subunit
5, putative" species:5833 "Plasmodium falciparum" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] KO:K10756 EMBL:AE014186
GO:GO:0006271 GO:GO:0005663 RefSeq:XP_001347790.1
ProteinModelPortal:Q8IIQ1 EnsemblProtists:PF11_0117:mRNA
GeneID:810666 KEGG:pfa:PF11_0117 EuPathDB:PlasmoDB:PF3D7_1111100
HOGENOM:HOG000282249 OMA:CIMALEM ProtClustDB:CLSZ2432864
Uniprot:Q8IIQ1
Length = 349
Score = 96 (38.9 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 25/93 (26%), Positives = 46/93 (49%)
Query: 342 ELNASDDRGIGIVRDQIFQFASTKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFT 399
EL D + + ++ + S+ + + Y++ + +A+ ++ AQ LRR +E +
Sbjct: 94 ELGNKDKIIVQSIIKELCSYKSSASFFSKTPMYRIFVFKDAEFLSEGAQAGLRRTLETYI 153
Query: 400 TNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDS 432
N R + +LSKI ++SRC R PL S
Sbjct: 154 RNARVILHLEHLSKIIEPLKSRCICIRV-PLPS 185
Score = 84 (34.6 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLY 331
D+ ++ + +LPH++FYG PG GK+T I ++++
Sbjct: 19 DITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIF 58
Score = 59 (25.8 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 103 VEKYRPSTLDELVSHQDI 120
+EKY P ++DEL H+DI
Sbjct: 3 LEKYSPQSIDELTIHKDI 20
>UNIPROTKB|Q8IIQ1 [details] [associations]
symbol:PF11_0117 "Replication factor C subunit 5, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] KO:K10756 EMBL:AE014186
GO:GO:0006271 GO:GO:0005663 RefSeq:XP_001347790.1
ProteinModelPortal:Q8IIQ1 EnsemblProtists:PF11_0117:mRNA
GeneID:810666 KEGG:pfa:PF11_0117 EuPathDB:PlasmoDB:PF3D7_1111100
HOGENOM:HOG000282249 OMA:CIMALEM ProtClustDB:CLSZ2432864
Uniprot:Q8IIQ1
Length = 349
Score = 96 (38.9 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 25/93 (26%), Positives = 46/93 (49%)
Query: 342 ELNASDDRGIGIVRDQIFQFASTKTMHKSS--YKLIILDEADAMTNDAQNALRRIIEKFT 399
EL D + + ++ + S+ + + Y++ + +A+ ++ AQ LRR +E +
Sbjct: 94 ELGNKDKIIVQSIIKELCSYKSSASFFSKTPMYRIFVFKDAEFLSEGAQAGLRRTLETYI 153
Query: 400 TNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDS 432
N R + +LSKI ++SRC R PL S
Sbjct: 154 RNARVILHLEHLSKIIEPLKSRCICIRV-PLPS 185
Score = 84 (34.6 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 292 DLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLY 331
D+ ++ + +LPH++FYG PG GK+T I ++++
Sbjct: 19 DITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIF 58
Score = 59 (25.8 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 103 VEKYRPSTLDELVSHQDI 120
+EKY P ++DEL H+DI
Sbjct: 3 LEKYSPQSIDELTIHKDI 20
>UNIPROTKB|E7DN81 [details] [associations]
symbol:E7DN81 "DnaX DNA polymerase III clamp loader complex
gamma-tau-delta subunit" species:59241 "Streptococcus phage Dp-1"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:HQ268735
RefSeq:YP_004306905.1 IntAct:E7DN81 GeneID:10358613 Uniprot:E7DN81
Length = 341
Score = 150 (57.9 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 43/132 (32%), Positives = 73/132 (55%)
Query: 310 LFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHK 369
LF G GTGKTTT A+ + K + +E++A+ + G+ VR+ I + + K+M
Sbjct: 39 LFCGGAGTGKTTTARIFAKDV-NKGLGSP--IEIDAASNNGVENVRN-IIEDSRYKSMD- 93
Query: 370 SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGP 429
S +K+ I+DE ++ A NAL + +E+ ++ F + KIP I SR RF F
Sbjct: 94 SEFKVYIIDEVHMLSTGAFNALLKTLEEPSSGTVFILCTTDPQKIPDTILSRVQRFDFTR 153
Query: 430 LDSSLIMSRLDY 441
+D+ I+++L +
Sbjct: 154 IDNDDIVNQLQF 165
>POMBASE|SPBC83.14c [details] [associations]
symbol:rfc5 "DNA replication factor C complex subunit
Rfc5 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] InterPro:IPR008921 InterPro:IPR013748
PomBase:SPBC83.14c GO:GO:0005829 EMBL:CU329671 GO:GO:0006281
GenomeReviews:CU329671_GR GO:GO:0000790 GO:GO:0043596 KO:K10756
eggNOG:COG0470 GO:GO:0003689 GO:GO:0031390 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 HOGENOM:HOG000224153 OMA:TRIMCLL PIR:T40703
RefSeq:NP_595646.1 ProteinModelPortal:O94697 STRING:O94697
EnsemblFungi:SPBC83.14c.1 GeneID:2540215 KEGG:spo:SPBC83.14c
OrthoDB:EOG4R273P NextBio:20801347 Uniprot:O94697
Length = 358
Score = 148 (57.2 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 47/142 (33%), Positives = 74/142 (52%)
Query: 312 YGPPGTGKT-----TTILACARKLYTKAQFNAMVLELNASD----DRGI--GIVRDQIFQ 360
YGP G+ K T + ++KL + LE+ SD DR I +++D + Q
Sbjct: 59 YGP-GSEKLKIDQRTFLTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKD-VAQ 116
Query: 361 FASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQS 420
A K +K+++++ AD +T DAQ ALRR +EK++ N+R +I N SKI I+S
Sbjct: 117 SAQVDLQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRS 176
Query: 421 RCTRFRFG---PLDSSLIMSRL 439
R R P + L+MS++
Sbjct: 177 RTLMVRVAAPTPEEIILVMSKI 198
Score = 40 (19.1 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 103 VEKYRPSTLDELVSHQDI 120
+++YRP TL L H+ +
Sbjct: 4 LDQYRPKTLASLDYHKQL 21
>TIGR_CMR|CHY_2675 [details] [associations]
symbol:CHY_2675 "putative DNA polymerase III, gamma/tau
subunits" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006260 "DNA replication" evidence=ISS] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_361464.1 ProteinModelPortal:Q3A8S0
STRING:Q3A8S0 GeneID:3728788 KEGG:chy:CHY_2675 PATRIC:21278371
OMA:DICHAIN BioCyc:CHYD246194:GJCN-2674-MONOMER Uniprot:Q3A8S0
Length = 511
Score = 149 (57.5 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 48/148 (32%), Positives = 69/148 (46%)
Query: 310 LFYGPPGTGKTTT--ILA----------------CARKLYTKAQFNAMVLELNASDDRGI 351
LF GP GTGKTTT +LA C + Q V E++A+ +RGI
Sbjct: 41 LFSGPRGTGKTTTAKVLAKAVNCEHPVEGEPCNQCPSCIGINNQSLLNVFEIDAASNRGI 100
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+R+ K YK+ I+DE +TN+A NAL + +E+ +V F +
Sbjct: 101 DEIRELRESIKLVPAQGK--YKVYIIDEVHMLTNEAFNALLKTLEEPPEHVIFILATTEF 158
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+K+P I SRC RF F + + I L
Sbjct: 159 NKVPVTIVSRCQRFDFKRISTKTIWEHL 186
>UNIPROTKB|G4NAB7 [details] [associations]
symbol:MGG_03202 "Replication factor C subunit 5"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 EMBL:CM001234 SUPFAM:SSF48019 Pfam:PF08542
RefSeq:XP_003716781.1 ProteinModelPortal:G4NAB7
EnsemblFungi:MGG_03202T0 GeneID:2676506 KEGG:mgr:MGG_03202
Uniprot:G4NAB7
Length = 352
Score = 125 (49.1 bits), Expect = 9.3e-07, Sum P(3) = 9.3e-07
Identities = 39/123 (31%), Positives = 67/123 (54%)
Query: 312 YGPPGTGKTTTILACARKLYT----KAQFNAMV----LELNASDDRGIG--IVRDQIFQF 361
YGP G K I AR T K +FN + LE+ SD +++D + +
Sbjct: 60 YGP-GVEK---IKIDARVFQTSSNRKLEFNIVASIYHLEITPSDVGNYDRVVIQDLLKEV 115
Query: 362 ASTKTMHKSS---YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAI 418
A T+ + + + +K+++++EAD ++ DAQ ALRR +EK++ N+R ++ N + I I
Sbjct: 116 AQTQQVDQGARQRFKVVVINEADHLSRDAQAALRRTMEKYSPNLRLILLANSTANIIAPI 175
Query: 419 QSR 421
+SR
Sbjct: 176 RSR 178
Score = 51 (23.0 bits), Expect = 9.3e-07, Sum P(3) = 9.3e-07
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 103 VEKYRPSTLDELVSHQDI 120
V+K+RP +LD L H+++
Sbjct: 5 VDKHRPRSLDSLTYHEEL 22
Score = 46 (21.3 bits), Expect = 9.3e-07, Sum P(3) = 9.3e-07
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 468 TDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 519
T IL ++ + L I + + V+++ + E+R+ GT L A +A F
Sbjct: 289 TTILKTLTFKLVPL-IDDDLKVEVIKWSAFYEHRIKMGTKVIFHLEAFVAKF 339
>UNIPROTKB|Q2GG32 [details] [associations]
symbol:ECH_0803 "Putative uncharacterized protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003593 SMART:SM00382 GO:GO:0000166 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0017111 eggNOG:COG0470 KO:K02341
RefSeq:YP_507601.1 ProteinModelPortal:Q2GG32 STRING:Q2GG32
GeneID:3927824 KEGG:ech:ECH_0803 PATRIC:20577034
HOGENOM:HOG000063483 OMA:VREMKNF ProtClustDB:CLSK749552
BioCyc:ECHA205920:GJNR-806-MONOMER Uniprot:Q2GG32
Length = 295
Score = 140 (54.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 40/139 (28%), Positives = 70/139 (50%)
Query: 298 NRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKA---QFNAMVLELNASDDR-GIGI 353
N I + L YG G GK T A+ L +N +L +N +++ GI
Sbjct: 12 NTLIHNTHIQSWLIYGNRGIGKATLAYRFAKYLTQSTYLNHYNPDLLTINDNEEIIGIDK 71
Query: 354 VRD-QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
+R+ + F + ST + Y+++I+D D++T +A NA+ +I+E+ N +I + L
Sbjct: 72 IRNIKNFLYLSTARL---KYRIVIVDSIDSLTINATNAMLKILEETPNNSIIILISHNLH 128
Query: 413 KIPPAIQSRCTRFRFGPLD 431
++P ++SRC F G D
Sbjct: 129 EVPTVVRSRC--FTLGLSD 145
>TIGR_CMR|ECH_0803 [details] [associations]
symbol:ECH_0803 "conserved hypothetical protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003593 SMART:SM00382 GO:GO:0000166 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0017111 eggNOG:COG0470 KO:K02341
RefSeq:YP_507601.1 ProteinModelPortal:Q2GG32 STRING:Q2GG32
GeneID:3927824 KEGG:ech:ECH_0803 PATRIC:20577034
HOGENOM:HOG000063483 OMA:VREMKNF ProtClustDB:CLSK749552
BioCyc:ECHA205920:GJNR-806-MONOMER Uniprot:Q2GG32
Length = 295
Score = 140 (54.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 40/139 (28%), Positives = 70/139 (50%)
Query: 298 NRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKA---QFNAMVLELNASDDR-GIGI 353
N I + L YG G GK T A+ L +N +L +N +++ GI
Sbjct: 12 NTLIHNTHIQSWLIYGNRGIGKATLAYRFAKYLTQSTYLNHYNPDLLTINDNEEIIGIDK 71
Query: 354 VRD-QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLS 412
+R+ + F + ST + Y+++I+D D++T +A NA+ +I+E+ N +I + L
Sbjct: 72 IRNIKNFLYLSTARL---KYRIVIVDSIDSLTINATNAMLKILEETPNNSIIILISHNLH 128
Query: 413 KIPPAIQSRCTRFRFGPLD 431
++P ++SRC F G D
Sbjct: 129 EVPTVVRSRC--FTLGLSD 145
>UNIPROTKB|Q2GDS0 [details] [associations]
symbol:NSE_0492 "Putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 140 (54.3 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 46/149 (30%), Positives = 72/149 (48%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAM------------------VLELNASDDRG 350
+L GP GTGKTTT A L + +A+ +LE++A+ + G
Sbjct: 41 ILLSGPYGTGKTTTARAVTLSLLCLNRTSALPCLKCDSCISILSGSHPDILEIDAASNTG 100
Query: 351 IGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+ VR + + A K + S YK I+DE ++ A +AL +++E+ +V+F +
Sbjct: 101 VEDVR-MLIEGALYKPL-LSKYKSYIVDEVHMLSQSAFSALLKLLEEPPQHVKFFLATTE 158
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
L KIP I SRC +R L +I RL
Sbjct: 159 LQKIPATIISRCQHYRLSRLSRVVIAERL 187
Score = 136 (52.9 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 48/159 (30%), Positives = 75/159 (47%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+ +V+F + L KI I SRC +R L +I RL V E+E++ +T D
Sbjct: 143 LEEPPQHVKFFLATTELQKIPATIISRCQHYRLSRLSRVVIAERLTQVAEKEQIEITQDA 202
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL-----LVSRVEKYRPSTLDELV 115
K I + +DG +R L++L+ T H E + T+ L LV E Y LD ++
Sbjct: 203 IKFIAEKADGSLRDALSLLEQV-TLHPSE-GKITVHVLRNKMGLVDLSEVYM--LLDSII 258
Query: 116 SHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
+ S ++ + L +M I L A +EKIQ
Sbjct: 259 AGDCKTSLGKLND--LYSKGYEMLTIFMELVALINEKIQ 295
>TIGR_CMR|NSE_0492 [details] [associations]
symbol:NSE_0492 "putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 140 (54.3 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 46/149 (30%), Positives = 72/149 (48%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAM------------------VLELNASDDRG 350
+L GP GTGKTTT A L + +A+ +LE++A+ + G
Sbjct: 41 ILLSGPYGTGKTTTARAVTLSLLCLNRTSALPCLKCDSCISILSGSHPDILEIDAASNTG 100
Query: 351 IGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+ VR + + A K + S YK I+DE ++ A +AL +++E+ +V+F +
Sbjct: 101 VEDVR-MLIEGALYKPL-LSKYKSYIVDEVHMLSQSAFSALLKLLEEPPQHVKFFLATTE 158
Query: 411 LSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
L KIP I SRC +R L +I RL
Sbjct: 159 LQKIPATIISRCQHYRLSRLSRVVIAERL 187
Score = 136 (52.9 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 48/159 (30%), Positives = 75/159 (47%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+ +V+F + L KI I SRC +R L +I RL V E+E++ +T D
Sbjct: 143 LEEPPQHVKFFLATTELQKIPATIISRCQHYRLSRLSRVVIAERLTQVAEKEQIEITQDA 202
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTL-----LVSRVEKYRPSTLDELV 115
K I + +DG +R L++L+ T H E + T+ L LV E Y LD ++
Sbjct: 203 IKFIAEKADGSLRDALSLLEQV-TLHPSE-GKITVHVLRNKMGLVDLSEVYM--LLDSII 258
Query: 116 SHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 154
+ S ++ + L +M I L A +EKIQ
Sbjct: 259 AGDCKTSLGKLND--LYSKGYEMLTIFMELVALINEKIQ 295
>TAIR|locus:2172013 [details] [associations]
symbol:AT5G45720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
EMBL:CP002688 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
IPI:IPI00536419 RefSeq:NP_199384.2 UniGene:At.51078
UniGene:At.70630 ProteinModelPortal:F4KEM0 SMR:F4KEM0 PRIDE:F4KEM0
EnsemblPlants:AT5G45720.1 GeneID:834611 KEGG:ath:AT5G45720
OMA:ESGRSEI Uniprot:F4KEM0
Length = 966
Score = 144 (55.7 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 58/223 (26%), Positives = 98/223 (43%)
Query: 310 LFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNAS----DD------RGIGIVRDQIF 359
+F+GP GTGKT+ AR L + + + +S DD R +G V+ F
Sbjct: 381 VFHGPNGTGKTSCARVFARALNCHSTEQSKPCGVCSSCVSYDDGKNRYIREMGPVKSFDF 440
Query: 360 QFASTKTMHKSSYK---LIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPP 416
+ KT + K ++I D+ D M+ D N L +I+++ V F ++C+ L +P
Sbjct: 441 ENLLDKTNIRQQQKQQLVLIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPH 500
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDY----DDISFFNXXXXXXXXXXXXXXXGLALTDILT 472
I SRC +F F L I+ L ++I +T L
Sbjct: 501 IIVSRCQKFFFPKLKDVDIIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMT--LE 558
Query: 473 EISLLVHRLEIP-ESMLVDLVL--KMSDI-EYRLAAGTSEKIQ 511
++SLL R+ +P +V L+ K+ D+ + L+A T ++
Sbjct: 559 QLSLLGTRISVPLVQEMVGLISDEKLVDLLDLALSADTVNTVK 601
>UNIPROTKB|Q97RF7 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma and tau subunits"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE005672
GenomeReviews:AE005672_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 OMA:QTSHAYL PIR:G95099
RefSeq:NP_345352.1 ProteinModelPortal:Q97RF7
EnsemblBacteria:EBSTRT00000026555 GeneID:930817 KEGG:spn:SP_0865
PATRIC:19706123 Uniprot:Q97RF7
Length = 551
Score = 136 (52.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 46/150 (30%), Positives = 71/150 (47%)
Query: 310 LFYGPPGTGKTTT--ILA----CARKLYTKAQFNAM------------VLELNASDDRGI 351
LF GP GTGKT+ I A C ++ + N V+E++A+ + G+
Sbjct: 41 LFSGPRGTGKTSVAKIFAKAMNCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGV 100
Query: 352 GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYL 411
+R+ + ST + YK+ I+DE ++ A NAL + +E+ T NV F + L
Sbjct: 101 DEIRE--IRDKSTYAPSLARYKVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTEL 158
Query: 412 SKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
KIP I SR RF F + + I + Y
Sbjct: 159 HKIPATILSRVQRFEFKSIKTQDIKEHIHY 188
Score = 124 (48.7 bits), Expect = 0.00021, P = 0.00021
Identities = 32/111 (28%), Positives = 58/111 (52%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+ T NV F + L KI I SR RF F + + I + Y++E+E ++ P+
Sbjct: 142 LEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQDIKEHIHYILEKENISSEPEA 201
Query: 61 KKAIIDLSDGDMRKVLNIL-QSAATAHADE----VNEDTIFTLLVSRVEKY 106
+ I ++G MR L+IL Q+ + +E ++E+ T+ +S ++ Y
Sbjct: 202 VEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEITGTISLSALDDY 252
>TIGR_CMR|DET_0585 [details] [associations]
symbol:DET_0585 "DNA polymerase III, gamma and tau
subunits, putative" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0009360 "DNA polymerase III complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_181327.1 ProteinModelPortal:Q3Z8X2 STRING:Q3Z8X2
GeneID:3230093 KEGG:det:DET0585 PATRIC:21608239 OMA:ISGDERI
ProtClustDB:PRK14950 BioCyc:DETH243164:GJNF-586-MONOMER
Uniprot:Q3Z8X2
Length = 559
Score = 136 (52.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 57/243 (23%), Positives = 109/243 (44%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+ V F + + K+ P I SRC RF F + S + +L+ + + E +N+ P+
Sbjct: 144 LEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLSDMSRKLEKISQAEGINIEPEA 203
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL-VSRVEKYRPSTLDELVSHQD 119
K I + G R N+LQ AT + E++ + L +S E+ + TL E + +D
Sbjct: 204 LKLIARSAGGSFRDGENLLQQIATTYGTEISLPQVQAALGISGDERIK--TLAENILKKD 261
Query: 120 IISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQL-SALIAAFNSARDKLEVLELNASD 178
I + ++ +++ D + + L + + L S + D+ + L+ ++
Sbjct: 262 IKNGLQTLNAVVADGI-DLKQFRRELLDYLRQIMLLNSGAEGSLELTADEKKALQKVSAI 320
Query: 179 DRGIGIVRDQIFQFA----STKTMHKSSYKLIILDEA-DAMTNDAQNALRRKLPVTPDGK 233
GI + I F+ S+ T S++L ++D + + T A + KLP K
Sbjct: 321 TNLEGITK-AIKAFSQLDFSSDTASSLSFELALVDASLNPDTAPATIPPQAKLPAPKTEK 379
Query: 234 KAI 236
A+
Sbjct: 380 PAV 382
Score = 127 (49.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 31/103 (30%), Positives = 57/103 (55%)
Query: 340 VLELNASDDRGIGIVRD--QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEK 397
V+E++A+ + G+ +R+ + Q+A ++YK+ I+DE ++N A NAL + +E+
Sbjct: 91 VIEIDAASNTGVDDIRELKEKVQYAPAL----ANYKVYIIDEVHMLSNSASNALLKTLEE 146
Query: 398 FTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
V F + + K+ P I SRC RF F + S + +L+
Sbjct: 147 PPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLSDMSRKLE 189
Score = 54 (24.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 310 LFYGPPGTGKTTT--ILACA 327
LF GP GTGKT+T ILA A
Sbjct: 42 LFCGPRGTGKTSTGRILAKA 61
>UNIPROTKB|O83970 [details] [associations]
symbol:TP_1005 "DNA polymerase III, subunits gamma and tau
(DnaH)" species:243276 "Treponema pallidum subsp. pallidum str.
Nichols" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001270 InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 EMBL:AE000520 GenomeReviews:AE000520_GR
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HSSP:P06710 PIR:G71254 RefSeq:NP_219442.1 ProteinModelPortal:O83970
IntAct:O83970 GeneID:2610796 KEGG:tpa:TP1005 PATRIC:20532135
OMA:ANAYIFS ProtClustDB:PRK06647 Uniprot:O83970
Length = 572
Score = 136 (52.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 48/153 (31%), Positives = 73/153 (47%)
Query: 307 PHLLFYGPPGTGKTTT--ILA----CA--------------RKLYTKAQFNAMVLELNAS 346
P LF GP G GKT+ ILA C R++ T N V+E++ +
Sbjct: 39 PAYLFSGPHGCGKTSCARILAKALNCVQREASEPCGECPSCREIATGTNLN--VIEIDGA 96
Query: 347 DDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
G+G VR QI + H + YK+ I+DE ++N A NAL + IE+ V F
Sbjct: 97 SHTGVGDVR-QIKEEILFPP-HGTRYKVFIIDEVHMLSNSAFNALLKTIEEPPPYVVFIF 154
Query: 407 ICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+ +IP ++SRC +F F +D+ ++ L
Sbjct: 155 ATTEVHRIPATVKSRCQQFHFRLVDTQTLVCAL 187
>TIGR_CMR|BA_0019 [details] [associations]
symbol:BA_0019 "DNA polymerase III, gamma and tau subunits"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 RefSeq:NP_842590.1
RefSeq:YP_016623.1 RefSeq:YP_026309.1 ProteinModelPortal:Q81W18
IntAct:Q81W18 DNASU:1089003 EnsemblBacteria:EBBACT00000011079
EnsemblBacteria:EBBACT00000018474 EnsemblBacteria:EBBACT00000022003
GeneID:1089003 GeneID:2819477 GeneID:2849405 KEGG:ban:BA_0019
KEGG:bar:GBAA_0019 KEGG:bat:BAS0021 OMA:QTSHAYL
BioCyc:BANT260799:GJAJ-24-MONOMER BioCyc:BANT261594:GJ7F-25-MONOMER
Uniprot:Q81W18
Length = 562
Score = 132 (51.5 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 48/163 (29%), Positives = 74/163 (45%)
Query: 298 NRFIDENELPHLLFYGPPGTGKTTTILACARKL-------------------YTKAQFNA 338
N + E LF GP GTGKTT A+ + T+ +
Sbjct: 30 NALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINCEHAPVAEPCNECPSCLGITQGSISD 89
Query: 339 MVLELNASDDRGIGIVRD--QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIE 396
VLE++A+ + G+ +RD ++A + YK+ I+DE ++ A NAL + +E
Sbjct: 90 -VLEIDAASNNGVDEIRDIRDKVKYAPSAV----EYKVYIIDEVHMLSMGAFNALLKTLE 144
Query: 397 KFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+ +V F + KIPP I SRC RF F + + I+ RL
Sbjct: 145 EPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVNDIVERL 187
Score = 124 (48.7 bits), Expect = 0.00022, P = 0.00022
Identities = 37/146 (25%), Positives = 65/146 (44%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+ +V F + KI P I SRC RF F + + I+ RL V+ E V +
Sbjct: 143 LEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVNDIVERLSTVVTNEGTQVEDEA 202
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQDI 120
+ + ++G MR L+++ A + + V + + + S ++Y L E + D+
Sbjct: 203 LQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVTGSVSQQYL-GNLVECIRENDV 261
Query: 121 ISTIEIPESML---VDLVLKMSDIEY 143
+ I + M+ D V M D Y
Sbjct: 262 SRALRIIDEMMGKGKDPVRFMEDFIY 287
>TIGR_CMR|SPO_3550 [details] [associations]
symbol:SPO_3550 "DNA polymerase III, gamma and tau
subunits" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
ProtClustDB:PRK09111 InterPro:IPR022107 Pfam:PF12362
RefSeq:YP_168745.1 ProteinModelPortal:Q5LML3 GeneID:3193201
KEGG:sil:SPO3550 PATRIC:23380573 OMA:FTHLVTR Uniprot:Q5LML3
Length = 583
Score = 131 (51.2 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 40/134 (29%), Positives = 65/134 (48%)
Query: 313 GPPGTGKTTTILACARKLYTKAQFNAM---VLELNASDDRGIGIVRDQIFQFASTKTMHK 369
GP G G TT C + + A V+E++A+ G+ +R+ I S +
Sbjct: 72 GPDGNGGPTTE-PCGKCEHCVAIMEGRHVDVMEMDAASRTGVNDIREII---DSVRYRAA 127
Query: 370 SS-YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRF--- 425
S+ YK+ I+DE ++ A NAL + +E+ +V+F + K+P + SRC RF
Sbjct: 128 SARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLR 187
Query: 426 RFGPLDSSLIMSRL 439
R P D +M R+
Sbjct: 188 RIEPEDMIALMRRI 201
Score = 46 (21.3 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 105 KYRPSTLDELVSHQDIISTIE 125
KYRP T +LV ++ T++
Sbjct: 15 KYRPETFADLVGQDAMVRTLK 35
>TIGR_CMR|CJE_1293 [details] [associations]
symbol:CJE_1293 "DNA polymerase III, gamma/tau subunits"
species:195099 "Campylobacter jejuni RM1221" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR012763
SMART:SM00382 GO:GO:0005524 GO:GO:0006260 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 TIGRFAMs:TIGR02397
RefSeq:YP_179281.1 ProteinModelPortal:Q5HTV4 STRING:Q5HTV4
GeneID:3231800 KEGG:cjr:CJE1293 PATRIC:20044382 OMA:EMMLFLK
ProtClustDB:PRK08451 BioCyc:CJEJ195099:GJC0-1319-MONOMER
Uniprot:Q5HTV4
Length = 509
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 30/100 (30%), Positives = 56/100 (56%)
Query: 340 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFT 399
++E++A+ +RG+ ++ I Q T +M + +K+ I+DE +T A NAL + +E+
Sbjct: 89 IIEMDAASNRGLEDIQALIEQTKYTPSMAR--FKIFIIDEVHMLTPQAANALLKTLEEPP 146
Query: 400 TNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+ V+F + K+P + SR FRF + S I++ L
Sbjct: 147 SYVKFILATTDPLKLPATVLSRTQHFRFKQIPQSEILNHL 186
>TIGR_CMR|GSU_0094 [details] [associations]
symbol:GSU_0094 "DNA polymerase III, gamma and tau
subunits" species:243231 "Geobacter sulfurreducens PCA" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000083933
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HSSP:P28631
RefSeq:NP_951156.1 ProteinModelPortal:Q74GZ9 GeneID:2688299
KEGG:gsu:GSU0094 PATRIC:22022936 OMA:ELIDHFR ProtClustDB:PRK14965
BioCyc:GSUL243231:GH27-55-MONOMER Uniprot:Q74GZ9
Length = 579
Score = 126 (49.4 bits), Expect = 0.00014, P = 0.00014
Identities = 26/99 (26%), Positives = 52/99 (52%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+ +V+F K+ I SRC RF F + + +++RL Y++++E ++++ +
Sbjct: 143 LEEPPPHVKFIFATTEPHKLPITILSRCQRFDFRRIPLAKVVARLRYIVDREGISISDES 202
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL 99
+ DG MR L++L + VN+D + +LL
Sbjct: 203 LAVVARKGDGSMRDSLSVLDQVLAFCGETVNDDDVVSLL 241
Score = 119 (46.9 bits), Expect = 0.00081, P = 0.00081
Identities = 30/103 (29%), Positives = 56/103 (54%)
Query: 340 VLELNASDDRGIGIVRDQIFQFASTKTM-HKSSYKLIILDEADAMTNDAQNALRRIIEKF 398
VLE++ + + G+ +R+ + K + + YK+ I+DE ++ +A NAL + +E+
Sbjct: 90 VLEIDGASNTGVDDIRELR---ENVKYLPSRLRYKIFIIDEVHMLSTNAFNALLKTLEEP 146
Query: 399 TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+V+F K+P I SRC RF F + + +++RL Y
Sbjct: 147 PPHVKFIFATTEPHKLPITILSRCQRFDFRRIPLAKVVARLRY 189
>UNIPROTKB|Q0C591 [details] [associations]
symbol:dnaX "DNA polymerase III, subunits gamma and tau"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_759102.1 STRING:Q0C591 GeneID:4289739
KEGG:hne:HNE_0372 PATRIC:32213536 OMA:TCARIVS ProtClustDB:PRK09111
BioCyc:HNEP228405:GI69-416-MONOMER InterPro:IPR022107 Pfam:PF12362
Uniprot:Q0C591
Length = 578
Score = 123 (48.4 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 31/100 (31%), Positives = 53/100 (53%)
Query: 340 VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFT 399
VLEL+A+ G+ +RD + A + + YK+ I+DE ++N + NAL + +E+
Sbjct: 128 VLELDAASRTGVADMRD-LLDSARYGPV-SARYKVYIIDEVHMLSNASFNALLKTLEEPP 185
Query: 400 TNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
+++F + K+P + SRC RF LDS + L
Sbjct: 186 PHLKFIFATTEIRKVPVTVLSRCQRFDLKRLDSGELSRHL 225
Score = 43 (20.2 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 105 KYRPSTLDELVSHQDIISTI 124
KYRP ++L+ + ++ T+
Sbjct: 35 KYRPRRFEDLIGQEAMVRTL 54
Score = 43 (20.2 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 298 NRFIDENELPH-LLFYGPPGTGKTTTILACARKL 330
N F + + H + G G GKTTT AR L
Sbjct: 56 NAF-ETGRIAHGFMLTGVRGVGKTTTARLLARGL 88
>TIGR_CMR|ECH_0014 [details] [associations]
symbol:ECH_0014 "DNA polymerase III, subunits gamma and
tau" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003583
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00278 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006260 GO:GO:0006281 GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 RefSeq:YP_506849.1
ProteinModelPortal:Q2GI84 STRING:Q2GI84 GeneID:3926952
KEGG:ech:ECH_0014 PATRIC:20575601 OMA:HPDVIEI ProtClustDB:PRK14964
BioCyc:ECHA205920:GJNR-14-MONOMER Uniprot:Q2GI84
Length = 505
Score = 121 (47.7 bits), Expect = 0.00040, P = 0.00040
Identities = 32/101 (31%), Positives = 58/101 (57%)
Query: 340 VLELNASDDRGIGIVRDQIFQFASTKTMHKSS-YKLIILDEADAMTNDAQNALRRIIEKF 398
V+E++A+ + I V+ I + +++ M SS +K+ I+DE ++N A NAL +++E+
Sbjct: 100 VIEIDAASNTSIEDVK-VILE--NSRYMPISSKFKVYIIDEVHMLSNSAFNALLKVLEEP 156
Query: 399 TTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
V+F + + KIP I SRC RF F + + ++ L
Sbjct: 157 APYVKFILATTEVKKIPVTIISRCQRFDFQRISTDKLVDHL 197
>UNIPROTKB|P09122 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0017111 GO:GO:0003887 EMBL:D26185
GO:GO:0009360 EMBL:X17014 EMBL:X06803 EMBL:X52144 PIR:I40469
PIR:S13786 RefSeq:NP_387900.2 ProteinModelPortal:P09122 SMR:P09122
IntAct:P09122 EnsemblBacteria:EBBACT00000003868 GeneID:936899
KEGG:bsu:BSU00190 PATRIC:18971499 GenoList:BSU00190 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563
BioCyc:BSUB:BSU00190-MONOMER SUPFAM:SSF48019 TIGRFAMs:TIGR02397
Uniprot:P09122
Length = 563
Score = 120 (47.3 bits), Expect = 0.00060, P = 0.00060
Identities = 46/151 (30%), Positives = 70/151 (46%)
Query: 310 LFYGPPGTGKTTT--ILA-------------CARKLYTKAQFNAM---VLELNASDDRGI 351
LF GP GTGKT+ I A C K N V+E++A+ + G+
Sbjct: 42 LFSGPRGTGKTSAAKIFAKAVNCEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGV 101
Query: 352 GIVRD--QIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICN 409
+RD +FA + +YK+ I+DE ++ A NAL + +E+ + F +
Sbjct: 102 DEIRDIRDKVKFAPSAV----TYKVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATT 157
Query: 410 YLSKIPPAIQSRCTRFRFGPLDSSLIMSRLD 440
KIP I SRC RF F + S I+ R++
Sbjct: 158 EPHKIPLTIISRCQRFDFKRITSQAIVGRMN 188
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 533 518 0.00089 119 3 11 22 0.37 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 99
No. of states in DFA: 599 (64 KB)
Total size of DFA: 234 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 43.52u 0.07s 43.59t Elapsed: 00:00:18
Total cpu time: 43.55u 0.07s 43.62t Elapsed: 00:00:18
Start: Thu Aug 15 11:32:29 2013 End: Thu Aug 15 11:32:47 2013