RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4285
(533 letters)
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 102 bits (254), Expect = 3e-25
Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 21/174 (12%)
Query: 296 KINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQFNAM--------------- 339
+ + + H LF G G GKT+ A+ L + A
Sbjct: 23 ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGR 82
Query: 340 ---VLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIE 396
++E++A+ + RD + + +K+ ++DE ++ + NAL + +E
Sbjct: 83 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR--FKVYLIDEVHMLSRHSFNALLKTLE 140
Query: 397 KFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNII 450
+ +V+F + K+P I SRC +F LD I +L++
Sbjct: 141 EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH 194
Score = 84.8 bits (209), Expect = 3e-19
Identities = 35/237 (14%), Positives = 77/237 (32%), Gaps = 70/237 (29%)
Query: 104 EKYRPSTLDELVSHQDIISTIE-------IPESMLV---DLVLKMSDIEYRLAAGTSEKI 153
K+RP T ++V + +++ + I + L V K S E
Sbjct: 4 RKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 63
Query: 154 QLSALIAAFNSARD-----KLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIIL 208
+ ++ R+ ++++E++A+ + RD + + +K+ ++
Sbjct: 64 ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR--FKVYLI 121
Query: 209 DEADAMTNDAQNALRR-------------------KLPVT-------------------- 229
DE ++ + NAL + KLPVT
Sbjct: 122 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 181
Query: 230 --------------PDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVG 272
P + + ++G +R L++ A + +V+ V +G
Sbjct: 182 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 238
Score = 67.8 bits (165), Expect = 2e-13
Identities = 21/99 (21%), Positives = 47/99 (47%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+ +V+F + K+ I SRC +F LD I +L++++ +E + P
Sbjct: 139 LEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA 198
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL 99
+ + ++G +R L++ A + +V+ + +L
Sbjct: 199 LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 237
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 100 bits (251), Expect = 3e-25
Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 3/149 (2%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNA-SDDRGIGIVR 355
+ R I+++E +L G + L + + VLE++ ++ GI +R
Sbjct: 6 LKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIR 65
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
I F + + K +I+ + + MT A NA + +E+ + +
Sbjct: 66 T-IKDFLNYSPEL-YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLL 123
Query: 416 PAIQSRCTRFRFGPLDSSLIMSRLDYDDI 444
P I+SR R + + D+
Sbjct: 124 PTIKSRVFRVVVNVPKEFRDLVKEKIGDL 152
Score = 41.2 bits (96), Expect = 1e-04
Identities = 10/90 (11%), Positives = 26/90 (28%), Gaps = 8/90 (8%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYV-------IEQEK 53
+E+ + + P I+SR R + + + +
Sbjct: 103 LEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLLERD 162
Query: 54 VNVTPDGKKAIIDLSDGDMRKVLNILQSAA 83
+ K + G + + L +L++
Sbjct: 163 FKTALEAYKLGAEKLSG-LMESLKVLETEK 191
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 94.6 bits (234), Expect = 1e-22
Identities = 70/132 (53%), Positives = 95/132 (71%), Gaps = 1/132 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ ++ +PHLLF GPPG GKTT LA AR+L+ + + LELNASD+RGI ++R
Sbjct: 35 RLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGINVIR 93
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+++ +FA TK + +S+K+I LDEADA+T DAQ ALRR +E F++NVRF + CNY SKI
Sbjct: 94 EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKII 153
Query: 416 PAIQSRCTRFRF 427
IQSRC FRF
Sbjct: 154 EPIQSRCAIFRF 165
Score = 70.0 bits (170), Expect = 4e-14
Identities = 44/96 (45%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E F++NVRF + CNY SKI IQSRC FRF PL I RL Y+ E E + +T +G
Sbjct: 133 MEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEG 192
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTIF 96
+AI+ +++GDMR+ +NILQ+AA A ++ ++ +F
Sbjct: 193 LQAILYIAEGDMRRAINILQAAA-ALDKKITDENVF 227
Score = 60.3 bits (145), Expect = 6e-11
Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 65/222 (29%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
VEKYRP LD++V + I+ ++ +K + + L G + AL
Sbjct: 15 VEKYRPQRLDDIVGQEHIVKRLKH--------YVKTGSMPHLLFAGPPGVGKTTAALALA 66
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTK----------------------- 196
+ LELNASD+RGI ++R+++ +FA TK
Sbjct: 67 RELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQ 126
Query: 197 -----------------TMHKSSYKLI-------------ILDEADAMTNDAQNALRRKL 226
S K+I L + D A L
Sbjct: 127 QALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL 186
Query: 227 PVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVY 268
+T +G +AI+ +++GDMR+ +NILQ+AA A ++ ++ V+
Sbjct: 187 ELTEEGLQAILYIAEGDMRRAINILQAAA-ALDKKITDENVF 227
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 80.9 bits (198), Expect = 5e-18
Identities = 85/132 (64%), Positives = 108/132 (81%), Gaps = 1/132 (0%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
+ +F+DE +LPHLLFYGPPGTGKT+TI+A AR++Y K ++ MVLELNASDDRGI +VR
Sbjct: 25 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVLELNASDDRGIDVVR 83
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIP 415
+QI FAST+ + +KLIILDEADAMTN AQNALRR+IE++T N RFC++ NY K+
Sbjct: 84 NQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLT 143
Query: 416 PAIQSRCTRFRF 427
PA+ S+CTRFRF
Sbjct: 144 PALLSQCTRFRF 155
Score = 55.1 bits (131), Expect = 3e-09
Identities = 47/103 (45%), Positives = 70/103 (67%), Gaps = 4/103 (3%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
IE++T N RFC++ NY K+TPA+ S+CTRFRF PL I R+ V+ EK+ ++P+
Sbjct: 123 IERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNA 182
Query: 61 KKAIIDLSDGDMRKVLNILQSAA----TAHADEVNEDTIFTLL 99
+KA+I+LS+GDMR+VLN+LQS DE+++D I+
Sbjct: 183 EKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECC 225
Score = 52.4 bits (124), Expect = 2e-08
Identities = 59/127 (46%), Positives = 74/127 (58%), Gaps = 9/127 (7%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE--IPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIA 160
VEKYRP TLDE+ ++I+T+ + E L L+ GT + + AL
Sbjct: 5 VEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGP-------PGTGKTSTIVALAR 57
Query: 161 AFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
VLELNASDDRGI +VR+QI FAST+ + +KLIILDEADAMTN AQN
Sbjct: 58 EIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQN 117
Query: 221 ALRRKLP 227
ALRR +
Sbjct: 118 ALRRVIE 124
Score = 44.7 bits (104), Expect = 1e-05
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 4/48 (8%)
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAA----TAHADEVNEDTVYNSVG 272
+P+ +KA+I+LS+GDMR+VLN+LQS DE+++D +Y G
Sbjct: 179 SPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 226
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 80.9 bits (198), Expect = 6e-18
Identities = 67/142 (47%), Positives = 95/142 (66%), Gaps = 10/142 (7%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
+ + + LPH+LFYGPPGTGKT+TILA ++LY + +LELNASD+RGI IVR
Sbjct: 23 VLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVR 82
Query: 356 DQIFQFAST----------KTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFC 405
+++ FA + YK+IILDEAD+MT DAQ+ALRR +E ++ RFC
Sbjct: 83 EKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFC 142
Query: 406 IICNYLSKIPPAIQSRCTRFRF 427
+ICNY+++I + S+C++FRF
Sbjct: 143 LICNYVTRIIDPLASQCSKFRF 164
Score = 53.2 bits (126), Expect = 2e-08
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 22/135 (16%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSE--KIQLSALIA 160
VEKYRP LDE+ + ++ ++ LK +++ + L G K +
Sbjct: 3 VEKYRPKNLDEVTAQDHAVTVLKK--------TLKSANLPHMLFYGPPGTGKTSTILALT 54
Query: 161 A--FNSARDKLEVLELNASDDRGIGIVRDQIFQFAST----------KTMHKSSYKLIIL 208
+ K +LELNASD+RGI IVR+++ FA + YK+IIL
Sbjct: 55 KELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIIL 114
Query: 209 DEADAMTNDAQNALR 223
DEAD+MT DAQ+ALR
Sbjct: 115 DEADSMTADAQSALR 129
Score = 46.2 bits (108), Expect = 3e-06
Identities = 32/86 (37%), Positives = 53/86 (61%)
Query: 10 FCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKAIIDLSD 69
FC+ICNY+++I + S+C++FRF LD+S + RL ++ EQE V + I+D+S
Sbjct: 141 FCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISA 200
Query: 70 GDMRKVLNILQSAATAHADEVNEDTI 95
GD+R+ + +LQSA+ + I
Sbjct: 201 GDLRRGITLLQSASKGAQYLGDGKNI 226
Score = 38.2 bits (87), Expect = 0.001
Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 187 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRKLPVTPDGKKAIIDLSDGDMRK 246
+ + + S ++ LD ++A+ + + + + I+D+S GD+R+
Sbjct: 146 NYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRR 205
Query: 247 VLNILQSAA-----TAHADEVNEDTVYNSVG 272
+ +LQSA+ + V G
Sbjct: 206 GITLLQSASKGAQYLGDGKNITSTQVEELAG 236
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 77.4 bits (189), Expect = 7e-17
Identities = 54/133 (40%), Positives = 83/133 (62%), Gaps = 2/133 (1%)
Query: 296 KINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
++ + + +PH++ G PG GKTT++ A +L ++ + ++ ELNASDDRGI +VR
Sbjct: 26 RLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVL-ELNASDDRGIDVVR 84
Query: 356 DQIFQFASTKTMHKSS-YKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKI 414
+QI FA K +K++ILDEAD+MT AQ ALRR +E ++ + RF CN +KI
Sbjct: 85 NQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144
Query: 415 PPAIQSRCTRFRF 427
+QS+C R+
Sbjct: 145 IEPLQSQCAILRY 157
Score = 64.3 bits (155), Expect = 2e-12
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 3 KFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKK 62
++ + RF CN +KI +QS+C R+ L ++ RL +I+ E V T DG +
Sbjct: 127 LYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLE 186
Query: 63 AIIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL 99
AII ++GDMR+ +N LQS H VN D +F ++
Sbjct: 187 AIIFTAEGDMRQAINNLQSTVAGH-GLVNADNVFKIV 222
Score = 49.3 bits (116), Expect = 3e-07
Identities = 49/154 (31%), Positives = 75/154 (48%), Gaps = 14/154 (9%)
Query: 103 VEKYRPSTLDELVSHQDIISTIEIPESMLVDLVLKMSDIEYRL---AAGTSEKIQLSALI 159
VEKYRP L ++V +++ I ++ + K ++ + + G + + L
Sbjct: 6 VEKYRPQVLSDIVGNKETIDRLQQ--------IAKDGNMPHMIISGMPGIGKTTSVHCLA 57
Query: 160 AAFNSARDKLEVLELNASDDRGIGIVRDQIFQFASTKTMHKSS-YKLIILDEADAMTNDA 218
VLELNASDDRGI +VR+QI FA K +K++ILDEAD+MT A
Sbjct: 58 HELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGA 117
Query: 219 QNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQ 252
Q ALRR + + + + K++ LQ
Sbjct: 118 QQALRRTMELYSN--STRFAFACNQSNKIIEPLQ 149
Score = 47.3 bits (111), Expect = 1e-06
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 194 STKTMHKSSYKLIILDEADAMTNDAQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQS 253
+ + L + D + Q + T DG +AII ++GDMR+ +N LQS
Sbjct: 146 EPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQS 205
Query: 254 AATAHADEVNEDTVYNSVG 272
H VN D V+ V
Sbjct: 206 TVAGH-GLVNADNVFKIVD 223
>d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 95
Score = 67.9 bits (166), Expect = 8e-15
Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLEIP-ESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
+ + +++ KGLAL D++ I ++ E+ E V L+ K++DIEY ++ G +++IQ
Sbjct: 22 HYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQ 81
Query: 512 LSALIAAFNSARD 524
SA+I A ++ +
Sbjct: 82 GSAVIGAIKASFE 94
Score = 45.9 bits (109), Expect = 5e-07
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 117 HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARD 167
+ + E V L+ K++DIEY ++ G +++IQ SA+I A ++ +
Sbjct: 44 VKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQGSAVIGAIKASFE 94
>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 95
Score = 67.5 bits (165), Expect = 1e-14
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 448 NIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVDLVLKMSDIEYRLAAGTS 507
N + K++EI +++GL+ D+L ++ V L I E V L K+ + +RL G +
Sbjct: 18 NFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGAN 77
Query: 508 EKIQLSALIAAFNSARDK 525
E IQL AL+A F K
Sbjct: 78 EIIQLEALLAQFTLIGKK 95
Score = 49.4 bits (118), Expect = 2e-08
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 85 AHADEVNEDTIFTLLVSRVEKYRPSTLDELVSHQ-----DIISTI-------EIPESMLV 132
A +++ + + L K R L E++ Q D++ + I E V
Sbjct: 2 ARPEDI-REMMLLALKGNFLKAR-EKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKV 59
Query: 133 DLVLKMSDIEYRLAAGTSEKIQLSALIAAFNSARDK 168
L K+ + +RL G +E IQL AL+A F K
Sbjct: 60 LLADKIGEYNFRLVEGANEIIQLEALLAQFTLIGKK 95
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 61.3 bits (147), Expect = 2e-11
Identities = 26/164 (15%), Positives = 48/164 (29%), Gaps = 20/164 (12%)
Query: 296 KINRFIDENELPH-LLFYGPPGTGKTTTILACARK-------------------LYTKAQ 335
K+ H LL PG G I A +R L
Sbjct: 13 KLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGT 72
Query: 336 FNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRII 395
+G+ + + K++ + +A +T+ A NAL + +
Sbjct: 73 HPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTL 132
Query: 396 EKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRL 439
E+ F + ++ ++SRC P ++ L
Sbjct: 133 EEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWL 176
Score = 54.3 bits (129), Expect = 5e-09
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
+E+ F + ++ ++SRC P ++ L +V ++ D
Sbjct: 132 LEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWL-----SREVTMSQDA 186
Query: 61 KKAIIDLSDGDMRKVLNILQ 80
A + LS G L + Q
Sbjct: 187 LLAALRLSAGSPGAALALFQ 206
Score = 42.8 bits (99), Expect = 3e-05
Identities = 11/57 (19%), Positives = 21/57 (36%)
Query: 196 KTMHKSSYKLIILDEADAMTNDAQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQ 252
+ + + + A A L R++ ++ D A + LS G L + Q
Sbjct: 150 RLLATLRSRCRLHYLAPPPEQYAVTWLSREVTMSQDALLAALRLSAGSPGAALALFQ 206
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 60.7 bits (146), Expect = 4e-11
Identities = 32/177 (18%), Positives = 53/177 (29%), Gaps = 31/177 (17%)
Query: 301 IDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
+ L HLL +GPPG GKTT + + + L + I D
Sbjct: 30 ARKEPLEHLLLFGPPGLGKTTLAHVI---------AHELGVNLRVTSGPAIEKPGDLAAI 80
Query: 361 FASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKF----------------TTNVRF 404
A+ ++ +DE ++ A+ L +E F RF
Sbjct: 81 LAN----SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 136
Query: 405 CIICNYLS--KIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEI 459
+I I + SR + +++ D + I EI
Sbjct: 137 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEI 193
Score = 42.3 bits (98), Expect = 6e-05
Identities = 14/95 (14%), Positives = 23/95 (24%), Gaps = 4/95 (4%)
Query: 4 FTTNVRFCIICNYLS---KITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDG 60
RF +I P + + + V +T +
Sbjct: 130 RLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEA 189
Query: 61 KKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
I S G MR + + A E+ I
Sbjct: 190 ALEIGRRSRGTMRVAKRLFRRVRDF-AQVAGEEVI 223
Score = 28.4 bits (62), Expect = 1.7
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 224 RKLPVTPDGKKAIIDLSDGDMRKVLNILQS----AATAHADEVNEDTVYNSVG 272
+ +T + I S G MR + + A A + + + ++
Sbjct: 181 LGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALA 233
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 59.7 bits (144), Expect = 3e-10
Identities = 19/149 (12%), Positives = 37/149 (24%), Gaps = 20/149 (13%)
Query: 307 PHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIV-------RDQIF 359
+ LF GP +GKTT A K L +N DR +
Sbjct: 155 RYWLFKGPIDSGKTTLAAALLELCGGK------ALNVNLPLDRLNFELGVAIDQFLVVFE 208
Query: 360 QFASTKTMHKSSYKLIILDEADAMTND------AQNALRRIIEKFTTNVRFCIICN-YLS 412
T + ++ D + + + + ++ + N Y
Sbjct: 209 DVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSV 268
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
+ + R ++
Sbjct: 269 PKTLQARFVKQIDFRPKDYLKHCLERSEF 297
Score = 27.7 bits (61), Expect = 3.5
Identities = 6/62 (9%), Positives = 16/62 (25%), Gaps = 7/62 (11%)
Query: 168 KLEVLELNASDDRGIGIV-------RDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQN 220
+ L +N DR + T + ++ D + +
Sbjct: 179 GGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDG 238
Query: 221 AL 222
++
Sbjct: 239 SV 240
>d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 92
Score = 52.9 bits (127), Expect = 1e-09
Identities = 14/74 (18%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 453 YIKIQEIKIEKGLALTDILTEISLLVHRLE-IPESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
++ +KG + DI+T + L + ES+ ++++ ++ R+ G +Q
Sbjct: 19 IQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQ 78
Query: 512 LSALIAAFNSARDK 525
L++++A + +K
Sbjct: 79 LASMLAKIHKLNNK 92
Score = 42.1 bits (99), Expect = 8e-06
Identities = 12/65 (18%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 112 DELVSHQDIISTI--------EIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAFN 163
+ S DI++T ++ ES+ ++++ ++ R+ G +QL++++A +
Sbjct: 28 KKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIH 87
Query: 164 SARDK 168
+K
Sbjct: 88 KLNNK 92
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 55.0 bits (131), Expect = 3e-09
Identities = 30/160 (18%), Positives = 49/160 (30%), Gaps = 8/160 (5%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI------GIVRDQIF 359
L H+L GPPG GKTT A +L T + + + D I G V
Sbjct: 35 LDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 94
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
K + + Y I + D M +A + I + ++
Sbjct: 95 IHRLNKAVEELLYSAIEDFQIDIMIGKGPSA--KSIRIDIQPFTLVGATTRSGLLSSPLR 152
Query: 420 SRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEI 459
SR + + + S ++ I + I
Sbjct: 153 SRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMI 192
Score = 41.5 bits (96), Expect = 1e-04
Identities = 12/104 (11%), Positives = 26/104 (25%), Gaps = 5/104 (4%)
Query: 1 IEKFTTNVRFCIICNYLSKITPAIQSRCTR-FRFGPLDSSLIMSRLDYVIEQEKVNVTPD 59
I ++ ++SR + + V +
Sbjct: 128 IRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDA 187
Query: 60 GKKAIIDLSDGDMRKVLNILQ----SAATAHADEVNEDTIFTLL 99
+ I S G R + + + AD +N D + +
Sbjct: 188 AAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTM 231
Score = 31.1 bits (69), Expect = 0.30
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 203 YKLIILDEADAMTNDAQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQ----SAATAH 258
+L + + A + + + I S G R + + +
Sbjct: 159 LELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVK 218
Query: 259 ADEVNEDTVYNSVG 272
AD +N D V ++
Sbjct: 219 ADRINTDIVLKTME 232
>d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 91
Score = 51.3 bits (123), Expect = 4e-09
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 453 YIKIQEIKIEKGLALTDILTEIS-LLVHRLEIPESMLVDLVLKMSDIEYRLAAGTSEKIQ 511
+ ++ G + ++ ++ + + + + + RL GT+E IQ
Sbjct: 22 KKYVNTF-MKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQ 80
Query: 512 LSALIAAF 519
L L+
Sbjct: 81 LLNLLVKI 88
Score = 44.0 bits (104), Expect = 2e-06
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 117 HQDIISTIEIPESMLVDLVLKMSDIEYRLAAGTSEKIQLSALIAAF 162
H+ I+ + + + + RL GT+E IQL L+
Sbjct: 43 HEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKI 88
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 51.3 bits (121), Expect = 7e-08
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 4 FTTNVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNVTPDGKKA 63
T+ I C +F D++ I SRL + +EK + P+
Sbjct: 152 KTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDR 211
Query: 64 IIDLSDGDMRKVLNILQSAATAHADEVNEDTIFTLL 99
+I + GD+R+V+N+L + +T +N + I +
Sbjct: 212 LIQTTRGDIRQVINLLSTISTTT-KTINHENINEIS 246
Score = 46.3 bits (108), Expect = 4e-06
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 214 MTNDAQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTVYNSVGY 273
+ A+R K + P+ +I + GD+R+V+N+L + +T +N + +
Sbjct: 190 KSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTT-KTINHENINEISKA 248
Query: 274 PTK 276
K
Sbjct: 249 WEK 251
Score = 44.8 bits (104), Expect = 1e-05
Identities = 24/159 (15%), Positives = 47/159 (29%), Gaps = 7/159 (4%)
Query: 275 TKTEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKA 334
+ ++ N L N + +K + YGPPG GKTT A++L
Sbjct: 22 SVMKLKNWLANWENSKKNS-FKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI 80
Query: 335 QFNAMVLELNASDDRGI------GIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQ 388
+ + + F+ + +II+DE D M+ +
Sbjct: 81 LEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR 140
Query: 389 NALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRF 427
+ ++ + I+ +P
Sbjct: 141 GGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDI 179
Score = 36.3 bits (82), Expect = 0.005
Identities = 4/23 (17%), Positives = 12/23 (52%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE 125
KY P+ L ++ ++ + ++
Sbjct: 5 TVKYAPTNLQQVCGNKGSVMKLK 27
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 50.2 bits (118), Expect = 2e-07
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 7 NVRFCIICNYLSKITPAIQSRCTRFRFGPLDSSLIMSRLDYVIEQEKVNV-TPDGKKAII 65
N+R ++C+ +S I I+S+C R S I + L V+ E++ + T D K I
Sbjct: 161 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIA 220
Query: 66 DLSDGDMRKVLNILQSAATAHADEVNEDTI 95
S+G++R L +L+S A + + +
Sbjct: 221 QASNGNLRVSLLMLESMALNNELALKSSSP 250
Score = 47.9 bits (112), Expect = 1e-06
Identities = 48/209 (22%), Positives = 80/209 (38%), Gaps = 45/209 (21%)
Query: 296 KINRFIDENELPH-LLFYGPPGTGKTTTILACARKLYTKAQFNAMV-------------- 340
+ D+ LL YGP GTGK T +A ++ + +
Sbjct: 22 FLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLE 81
Query: 341 ---------LELNASDDRGIGIVRD----------QIFQFASTKTMHKSSYKLIILDEAD 381
LE+ SD + + F +K YK +I++EA+
Sbjct: 82 LNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEAN 141
Query: 382 AMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDY 441
++T DAQ ALRR +EK++ N+R ++C+ +S I I+S+C R
Sbjct: 142 SLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPA-----------P 190
Query: 442 DDISFFNIIIWYIKIQEIKIEKGLALTDI 470
D I+ + + I++E L I
Sbjct: 191 SDSEISTILSDVVTNERIQLETKDILKRI 219
Score = 40.5 bits (93), Expect = 2e-04
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 229 TPDGKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTV 267
T D K I S+G++R L +L+S A + + +
Sbjct: 212 TKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSP 250
Score = 37.5 bits (85), Expect = 0.003
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 103 VEKYRPSTLDELVSHQDIISTIE 125
V+KYRP +L+ L ++++ + ++
Sbjct: 2 VDKYRPKSLNALSHNEELTNFLK 24
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 44.4 bits (103), Expect = 2e-05
Identities = 22/141 (15%), Positives = 35/141 (24%), Gaps = 16/141 (11%)
Query: 302 DENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNA---MVLELNASDDRGIGIVRDQI 358
+ P G PGTGKT T+ K I R
Sbjct: 39 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLN 98
Query: 359 FQFASTKTMHKSSYKLII-------------LDEADAMTNDAQNALRRIIEKFTTNVRFC 405
F L++ LD+A + D + R+ ++ F
Sbjct: 99 IPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFR 158
Query: 406 IICNYLSKIPPAIQSRCTRFR 426
I + + + R
Sbjct: 159 IALVIVGHNDAVLNNLDPSTR 179
Score = 30.2 bits (66), Expect = 0.51
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Query: 174 LNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRKLPVTPDGK 233
LN D GI+ + +F+ L A + +++ L ++ G
Sbjct: 171 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDIL--QMIADITGA 228
Query: 234 KAIIDLSDGDMRKVLNILQSAATAHADEVNEDTV 267
+ +D + GD R ++IL +A A + +
Sbjct: 229 QTPLDTNRGDARLAIDILYRSA-YAAQQNGRKHI 261
Score = 27.8 bits (60), Expect = 2.7
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 60 GKKAIIDLSDGDMRKVLNILQSAATAHADEVNEDTI 95
G + +D + GD R ++IL +A A + I
Sbjct: 227 GAQTPLDTNRGDARLAIDILYRSA-YAAQQNGRKHI 261
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 42.9 bits (100), Expect = 6e-05
Identities = 17/119 (14%), Positives = 34/119 (28%), Gaps = 13/119 (10%)
Query: 302 DENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMV-LELNASDDRGIGIVRDQIFQ 360
E ++L GP G GKT A+ + + + +
Sbjct: 45 HEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 104
Query: 361 FASTKTMHKSSYKLIILDEADAMTNDA------------QNALRRIIEKFTTNVRFCII 407
A ++ +DE D + Q L ++E T + + ++
Sbjct: 105 SAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMV 163
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 42.4 bits (98), Expect = 8e-05
Identities = 25/254 (9%), Positives = 62/254 (24%), Gaps = 36/254 (14%)
Query: 278 EITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLY------ 331
E + R LN + + + G G GKTT +++
Sbjct: 24 EAEALARIYLNRLL------SGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKE 77
Query: 332 ---------------TKAQFNAMVLELNASDDRGIGIVRDQIFQF------ASTKTMHKS 370
++++ + G I + +
Sbjct: 78 GLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVI 137
Query: 371 SYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGPL 430
+ + + + + L R+ E+ + I + +++ P
Sbjct: 138 LDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG--FLLVASDVRALSYMREKIPQ 195
Query: 431 DSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVHRLEIPESMLVD 490
S I +L + + E+ + + L IS + +
Sbjct: 196 VESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGE-DKGGDGSAR 254
Query: 491 LVLKMSDIEYRLAA 504
+ + +A
Sbjct: 255 RAIVALKMACEMAE 268
Score = 29.0 bits (63), Expect = 1.4
Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 12/95 (12%)
Query: 13 ICNYLSKITPAIQSRCTRFRFGPLDSS--LIMSRLDYVIEQEKVNVTPDGKKAIIDLS-- 68
+ KI + S + + P + I D+
Sbjct: 186 LSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGE 245
Query: 69 ----DGDMRKVLNILQSAA----TAHADEVNEDTI 95
DG R+ + L+ A D ++ED +
Sbjct: 246 DKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLV 280
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 41.7 bits (98), Expect = 9e-05
Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 44/184 (23%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD--DRGIG----IVRDQIFQFA 362
+L GPPGTGKT A A + ++ SD + +G VR +F+ A
Sbjct: 48 VLMVGPPGTGKTLLAKAIAGEA------KVPFFTISGSDFVEMFVGVGASRVR-DMFEQA 100
Query: 363 STKTMHKSSYKLIILDEADAM--------------TNDAQNALRRIIEKFTTNVRFCIIC 408
K++ +I +DE DA+ N + ++ F N +I
Sbjct: 101 K-----KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIA 155
Query: 409 --NYLSKIPPAIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLA 466
N + PA+ R G D +++ D I + ++ + + +
Sbjct: 156 ATNRPDVLDPAL------LRPGRFDRQVVVGLPDVRGR----EQILKVHMRRVPLAPDID 205
Query: 467 LTDI 470
I
Sbjct: 206 AAII 209
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 38.7 bits (90), Expect = 0.001
Identities = 41/217 (18%), Positives = 72/217 (33%), Gaps = 50/217 (23%)
Query: 276 KTEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQ 335
K E+ I+ +L N S +L GPPG GKT A A +
Sbjct: 18 KEELKEIVEFLKNPSRFHEMGARIP------KGVLLVGPPGVGKTHLARAVAGEA----- 66
Query: 336 FNAMVLELNASD--DRGIG----IVRDQIFQFASTKTMHKSSYKLIILDEADAM------ 383
+ + SD + +G VRD +F+ A + + ++ +DE DA+
Sbjct: 67 -RVPFITASGSDFVEMFVGVGAARVRD-LFETA-----KRHAPCIVFIDEIDAVGRKRGS 119
Query: 384 --------TNDAQNALRRIIEKFTTNVRFCIIC--NYLSKIPPAIQSRCTRFRFGPLDSS 433
N L ++ F + ++ N + PA+ R G D
Sbjct: 120 GVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPAL------LRPGRFDRQ 173
Query: 434 LIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDI 470
+ + D I I + + + + L +
Sbjct: 174 IAIDAPDVKGR----EQILRIHARGKPLAEDVDLALL 206
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 37.6 bits (86), Expect = 0.002
Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 8/132 (6%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH 368
+L GPP +GKT LA + F + + F +
Sbjct: 43 VLLEGPPHSGKTA--LAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIF---DDAY 97
Query: 369 KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFG 428
KS +++D+ + + + R + + I T R
Sbjct: 98 KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII---GTTSRKD 154
Query: 429 PLDSSLIMSRLD 440
L +++
Sbjct: 155 VLQEMEMLNAFS 166
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 35.8 bits (81), Expect = 0.006
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 308 HLLFYGPPGTGKTTTILACARKL 330
H+ GPPG GKTT I + L
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVL 25
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 35.4 bits (80), Expect = 0.007
Identities = 16/138 (11%), Positives = 44/138 (31%), Gaps = 4/138 (2%)
Query: 304 NELPHLL-FYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFA 362
N H+ G G+GK+ A +L+ + + G + +
Sbjct: 3 NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASG---EPLNDDD 59
Query: 363 STKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRC 422
+ + + + ++ +AL++ + YL I+SR
Sbjct: 60 RKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRL 119
Query: 423 TRFRFGPLDSSLIMSRLD 440
+ + +++++ +
Sbjct: 120 KARKGHFFKTQMLVTQFE 137
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 35.7 bits (81), Expect = 0.009
Identities = 31/239 (12%), Positives = 66/239 (27%), Gaps = 17/239 (7%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQF-NAMVLELNASDDRGIGIVRDQIFQFASTKTM 367
L G PG+GKT+ A + + + + + + ++ T
Sbjct: 35 FLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYS 94
Query: 368 HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSR----CT 423
++ + +I + R T A+ T
Sbjct: 95 NRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGT 154
Query: 424 RFRFGPLDSSLIM-SRLDYDDISFFNIIIWYIKIQEIKIEKGL-ALTDILTEISLLVHRL 481
R+ + + M +R + ++ + + E L L
Sbjct: 155 IERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREGVKLYSSL 214
Query: 482 EIPESMLVDLVLKMSDIEYRLAAGTS--EKIQLSAL------IAAFNSARDKLEA--PP 530
E P + + K + + E+I+ + F + + KLE+ PP
Sbjct: 215 ETPSISPKETLEKELNRKVSGKEIQPTLERIEQKMVLNKHQETPEFKAIQQKLESLQPP 273
>d1fs7a_ a.138.1.3 (A:) Cytochrome c nitrite reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 471
Score = 34.3 bits (78), Expect = 0.034
Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 18/81 (22%)
Query: 318 GKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIIL 377
G T L R AQ+ A A G H L +L
Sbjct: 337 GATDAELKEIRTHIRHAQWRA----DMAIAGHGSF--------------FHAPEEVLRLL 378
Query: 378 DEADAMTNDAQNALRRIIEKF 398
+ A+ L +++ K+
Sbjct: 379 ASGNEEAQKARIKLVKVLAKY 399
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 34.1 bits (77), Expect = 0.035
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 308 HLLFYGPPGTGKTTTILACARKL 330
+L +G GTGK+T + A A L
Sbjct: 30 GVLVFGDRGTGKSTAVRALAALL 52
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 33.5 bits (76), Expect = 0.038
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 3/87 (3%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH 368
+L G G GKTTTI AR+ Q V+ R + + Q++ + +
Sbjct: 12 ILMVGVNGVGKTTTIGKLARQF---EQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVI 68
Query: 369 KSSYKLIILDEADAMTNDAQNALRRII 395
A+ ++
Sbjct: 69 AQHTGADSASVIFDAIQAAKARNIDVL 95
>d2rdza1 a.138.1.3 (A:38-477) Cytochrome c nitrite reductase
{Escherichia coli [TaxId: 562]}
Length = 440
Score = 33.6 bits (76), Expect = 0.049
Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 20/97 (20%)
Query: 303 ENELPHLLFYGPPG--TGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQ 360
E++L H F G T + + AQ+ + A GI
Sbjct: 307 EDQLVHAHFEAKAALDAGATEAEMKPIQDDIRHAQWRWDL----AIASHGIH-------- 354
Query: 361 FASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEK 397
MH L +L A DA+ L R++
Sbjct: 355 ------MHAPEEGLRMLGTAMDKAADARTKLARLLAT 385
Score = 28.6 bits (63), Expect = 2.0
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 5/69 (7%)
Query: 198 MHKSSYKLIILDEADAMTNDAQNALRRKLPVTPDGKKAIIDLSDGDMRKVLNILQSAATA 257
MH L +L A DA+ L R L K I Q A
Sbjct: 355 MHAPEEGLRMLGTAMDKAADARTKLARLLA-----TKGITHEIQIPDISTKEKAQQAIGL 409
Query: 258 HADEVNEDT 266
+ +++ +
Sbjct: 410 NMEQIKAEK 418
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 33.5 bits (76), Expect = 0.053
Identities = 23/151 (15%), Positives = 43/151 (28%), Gaps = 25/151 (16%)
Query: 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR-DQIFQFASTKT 366
++ G +GKT + A L K ++ + S V D I +
Sbjct: 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAM---- 180
Query: 367 MHKSSYKLIILDEADAMTNDAQ------------NALRRIIEKFTTNVRFCIIC--NYLS 412
+++I++D + A L I + +I N S
Sbjct: 181 ---LQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTS 237
Query: 413 KIPPAIQSRCTRFRFGPLDSSLIMSRLDYDD 443
I +S+ ++ D D
Sbjct: 238 -NDDKIVEL--VKEASRSNSTSLVISTDVDG 265
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 32.3 bits (72), Expect = 0.10
Identities = 42/223 (18%), Positives = 75/223 (33%), Gaps = 34/223 (15%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH 368
+L YGPPGTGKT A A + A +N + + + +
Sbjct: 41 ILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIMSKLAGESESNLRKAFEEAE 94
Query: 369 KSSYKLIILDEADAM----TNDAQNALRRIIEKFTT---------NVRFCIICNYLSKIP 415
K++ +I +DE DA+ RRI+ + T +V N + I
Sbjct: 95 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 154
Query: 416 PAIQSRC---TRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEK--GLALTDI 470
PA++ G D++ + L + ++ + G L +
Sbjct: 155 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAAL 214
Query: 471 LTEISLLVHR----------LEIPESMLVDLVLKMSDIEYRLA 503
+E +L R I ++ L + M D + L+
Sbjct: 215 CSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALS 257
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 32.0 bits (72), Expect = 0.11
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 309 LLFYGPPGTGKTTTILACARKL 330
+L G G GKTTTI R
Sbjct: 9 VLVVGVNGVGKTTTIAKLGRYY 30
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 31.7 bits (71), Expect = 0.15
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMV 340
++ G GTGK TT A K +V
Sbjct: 15 IMLVGVQGTGKATTAGKLAYFYKKKGFKVGLV 46
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 31.6 bits (71), Expect = 0.15
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 303 ENELPHL------LFYGPPGTGKTTTILACARKL 330
E LP L G G+GKTTT A
Sbjct: 1 EARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYY 34
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 31.3 bits (70), Expect = 0.18
Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 12/104 (11%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF--------- 359
+ G +GK+T + +L + +A D+ G+ +D F
Sbjct: 27 IWLTGLSASGKSTLAVELEHQLVRDRRVHAYR---LDGDNIRFGLNKDLGFSEADRNENI 83
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVR 403
+ + + I + + ++ R++ E T
Sbjct: 84 RRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEE 127
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus
thermophilus [TaxId: 274]}
Length = 318
Score = 31.5 bits (71), Expect = 0.20
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 310 LFYGPPGTGKTTTILACARKL 330
+F+G GTGKTT R L
Sbjct: 18 VFFGLSGTGKTTLSTDPERPL 38
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 31.3 bits (70), Expect = 0.22
Identities = 10/134 (7%), Positives = 33/134 (24%), Gaps = 21/134 (15%)
Query: 276 KTEITNILRWLLNESMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARK--LYTK 333
+ + +++ L + + + L +G G+GK+ K
Sbjct: 26 EYHVDRVIKKLDE------------MCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIG 73
Query: 334 AQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRR 393
++++V ++ ++ + + + R
Sbjct: 74 INYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVL-------KRM 126
Query: 394 IIEKFTTNVRFCII 407
I +
Sbjct: 127 ICNALIDRPNTLFV 140
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 31.3 bits (70), Expect = 0.22
Identities = 29/136 (21%), Positives = 44/136 (32%), Gaps = 25/136 (18%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD------DRGIGIVRDQIFQFA 362
+LFYGPPG GKT A A + A + + + VR+ IF A
Sbjct: 44 VLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMWFGESEANVRE-IFDKA 96
Query: 363 STKTMHKSSYKLI---------ILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC--NYL 411
+ + + + + N + ++ +T II N
Sbjct: 97 RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 156
Query: 412 SKIPPAIQSRCTRFRF 427
I PAI R R
Sbjct: 157 DIIDPAIL-RPGRLDQ 171
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 31.4 bits (71), Expect = 0.22
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 14/99 (14%)
Query: 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTM 367
+L G G GK AR ++ + + I ++F +
Sbjct: 25 PVLITGESGVGKEV----VARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFT 80
Query: 368 HKSSYKL----------IILDEADAMTNDAQNALRRIIE 396
S K + LDE ++ +AQ L R+IE
Sbjct: 81 GAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIE 119
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 31.2 bits (70), Expect = 0.24
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 309 LLFYGPPGTGKTTTI--LACARKLYTKAQFNAMVLELNASDDRGIGIVRDQ 357
++ G GTGKTT+ LA K++ + ++ + I ++
Sbjct: 14 IMVVGVNGTGKTTSCGKLA---KMFVDEGKSVVLAAADTFRAAAIEQLKIW 61
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 30.8 bits (68), Expect = 0.24
Identities = 13/125 (10%), Positives = 31/125 (24%), Gaps = 6/125 (4%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH 368
+ G G GKTT + L + + D+ G+ ++ F +
Sbjct: 22 VWLTGLSGAGKTT----VSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV 77
Query: 369 KSSYKLII--LDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFR 426
+ ++ D + + + + + + R
Sbjct: 78 RRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDV 137
Query: 427 FGPLD 431
G
Sbjct: 138 KGLYK 142
>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Trypanosoma cruzi [TaxId: 5693]}
Length = 323
Score = 31.5 bits (71), Expect = 0.25
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 310 LFYGPPGTGKTTTILACARKL 330
+F+G GTGKTT R L
Sbjct: 18 VFFGLSGTGKTTLSADPHRNL 38
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 31.5 bits (70), Expect = 0.25
Identities = 16/100 (16%), Positives = 28/100 (28%), Gaps = 9/100 (9%)
Query: 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTM 367
LL G+GKT + L + E + + + I + +
Sbjct: 26 PLLIMAGAGSGKTRVLTHRIAYL---------MAEKHVAPWNILAITFTNKAAREMRERV 76
Query: 368 HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII 407
+ LRR I++ N F I+
Sbjct: 77 QSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSIL 116
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 30.8 bits (68), Expect = 0.26
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 310 LFYGPPGTGKTTTILACARKL 330
G +GK+ + A
Sbjct: 11 AILGGESSGKSVLVNKLAAVF 31
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 31.1 bits (69), Expect = 0.28
Identities = 13/121 (10%), Positives = 29/121 (23%), Gaps = 3/121 (2%)
Query: 310 LFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF---QFASTKT 366
L G GTGKT + + + + + I R + +
Sbjct: 30 LVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK 89
Query: 367 MHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFR 426
+ + D + RI + + ++ + + R
Sbjct: 90 LFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRR 149
Query: 427 F 427
Sbjct: 150 E 150
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 31.2 bits (69), Expect = 0.29
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 308 HLLFYGPPGTGKTTTILACARKL 330
L G+GKT I L
Sbjct: 16 PCLVLAGAGSGKTRVITNKIAHL 38
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 30.7 bits (68), Expect = 0.29
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTK 333
+P L F GTGKTT + L +
Sbjct: 2 IPLLAFAAWSGTGKTTLLKKLIPALCAR 29
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 31.2 bits (70), Expect = 0.30
Identities = 31/186 (16%), Positives = 63/186 (33%), Gaps = 14/186 (7%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQ----FNAMVLELNASDDRGIG-----IVRDQIF 359
LF GP G GKT A L+ + + + R IG + ++
Sbjct: 56 FLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGG 115
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEK---FTTNVRFCIICNYLSKIPP 416
Q T+ + + Y +I+ DE + D N L +I++ ++ R N + +
Sbjct: 116 QL--TEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 173
Query: 417 AIQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISL 476
+ S + + + + ++ EI + + L I + +
Sbjct: 174 NLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEI 233
Query: 477 LVHRLE 482
+ L
Sbjct: 234 QLSYLR 239
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 30.7 bits (68), Expect = 0.30
Identities = 13/136 (9%), Positives = 34/136 (25%), Gaps = 14/136 (10%)
Query: 298 NRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQ 357
N+ + + G PG G TT+ L + ++ +
Sbjct: 1 NKVV--------VVTGVPGVGSTTSSQLAMDNLRKE---GVNYKMVSFGSVMFEVAKEEN 49
Query: 358 IFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
+ + I A + ++ + YL +P
Sbjct: 50 LVSDRDQMRKMDPETQKRIQKMAGRKIAEMAKESPVAVDTHS---TVSTPKGYLPGLPSW 106
Query: 418 IQSRCTRFRFGPLDSS 433
+ + ++++
Sbjct: 107 VLNELNPDLIIVVETT 122
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 30.5 bits (67), Expect = 0.31
Identities = 16/150 (10%), Positives = 27/150 (18%), Gaps = 18/150 (12%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH 368
+ G +GK A L + G + + +
Sbjct: 9 IFLTGYMNSGKDAIARALQVTLNQQ------------------GGRSVSLLLGDTVRHEL 50
Query: 369 KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFG 428
S D + A A K S+ F
Sbjct: 51 SSELGFTREDRHTNIQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLV 110
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQE 458
+ + L + IK
Sbjct: 111 HVATPLEHCEQSDKRGIYAAARRGEIKGFT 140
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 30.6 bits (68), Expect = 0.32
Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 25/129 (19%)
Query: 297 INRFIDENELPHLLFYGPPGTGKTTTILACARKL--------YTKAQFNAMVLELNASDD 348
+ R++ + P G+GKT +A +L T A L +
Sbjct: 79 LERWLVDK---RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGE 135
Query: 349 RGIGI-----------VRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEK 397
+G + + L+I DE + + + +I +
Sbjct: 136 EYVGEFSGRIKELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAE---SYVQIAQM 192
Query: 398 FTTNVRFCI 406
R +
Sbjct: 193 SIAPFRLGL 201
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 30.6 bits (69), Expect = 0.32
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKA 334
L+F GP TGK+ ++ +
Sbjct: 56 LVFCGPANTGKSYFGMSFIHFIQGAV 81
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 30.7 bits (69), Expect = 0.38
Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 16/128 (12%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMV--LELNASDDRGIGIVRDQIFQFASTKT 366
+ +GP TGKT A A + N N D+ + + ++
Sbjct: 107 IWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTAKVVES 166
Query: 367 MHKSSYKLIILDEADAMTNDAQN----ALRRIIEKFTTNVRFCIICNYLSKIP---PAIQ 419
IL + D + + T+N C + + S +Q
Sbjct: 167 AKA------ILGG-SKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQ 219
Query: 420 SRCTRFRF 427
R +F
Sbjct: 220 DRMFKFEL 227
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 30.1 bits (66), Expect = 0.56
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 299 RFIDENELPHLLFYGPPGTGKTTTILACARKL 330
+ P L G TGK++ I +L
Sbjct: 22 EKLKGLRAPITLVLGLRRTGKSSIIKIGINEL 53
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 30.1 bits (66), Expect = 0.60
Identities = 7/42 (16%), Positives = 12/42 (28%)
Query: 310 LFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGI 351
F G G+GKT + L ++ +
Sbjct: 38 EFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQP 79
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 30.1 bits (66), Expect = 0.60
Identities = 5/27 (18%), Positives = 7/27 (25%)
Query: 310 LFYGPPGTGKTTTILACARKLYTKAQF 336
+G TGK+ A
Sbjct: 38 ELFGEFRTGKSQLCHTLAVTCQIPLDI 64
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 30.2 bits (66), Expect = 0.65
Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 11/112 (9%)
Query: 310 LFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR-----------DQI 358
L G G+GK++ + A LY + + + +
Sbjct: 27 LIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYRITR 86
Query: 359 FQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
+ + K ++ +E +T + A+ +EK F
Sbjct: 87 RFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYI 138
>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Escherichia coli [TaxId: 562]}
Length = 313
Score = 29.6 bits (66), Expect = 0.95
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 310 LFYGPPGTGKTTTILACARKL 330
+F+G GTGKTT R+L
Sbjct: 18 VFFGLSGTGKTTLSTDPKRRL 38
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 29.6 bits (65), Expect = 0.95
Identities = 10/105 (9%), Positives = 29/105 (27%), Gaps = 8/105 (7%)
Query: 310 LFYGPPGTGKTTTILACARKLYTKAQFNAMVLE-----LNASDDRGIGIVRDQIFQFAST 364
P G GK+ L A ++ + + + + ++ +
Sbjct: 33 ALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAH 92
Query: 365 KTMH---KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCI 406
+ + L+I ++ N +++ R +
Sbjct: 93 LSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMV 137
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 28.8 bits (64), Expect = 1.0
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 16/98 (16%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASD--------------DRGIGIV 354
+L G G GK+ L K + +A+ + + RG+GI+
Sbjct: 18 VLLTGRSGIGKSECALDLINKNHLFVGDDAIEIYRLGNRLFGRAQEVAKKFMEIRGLGII 77
Query: 355 RDQIFQFASTKTMHKSSYKLII-LDEADAMTNDAQNAL 391
+ + T ++ +L++ L + T L
Sbjct: 78 -NVERFYGLQITKQRTEIQLMVNLLSLEKQTTVTFERL 114
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 29.2 bits (64), Expect = 1.0
Identities = 18/147 (12%), Positives = 41/147 (27%), Gaps = 3/147 (2%)
Query: 310 LFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHK 369
+ G PG GK+T + L Q + + + +
Sbjct: 5 IVTGIPGVGKSTVLAKVKEIL--DNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62
Query: 370 SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGP 429
K + +D A + +A+ + T+ YL +P + +
Sbjct: 63 EKQKKLQIDAAKGIAEEARAGGEGYL-FIDTHAVIRTPSGYLPGLPSYVITEINPSVIFL 121
Query: 430 LDSSLIMSRLDYDDISFFNIIIWYIKI 456
L++ + + N + +
Sbjct: 122 LEADPKIILSRQKRDTTRNRNDYSDES 148
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 28.8 bits (63), Expect = 1.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 309 LLFYGPPGTGKTTTILACARKL 330
LL G PG+GK+T A A
Sbjct: 7 LLLSGHPGSGKSTIAEALANLP 28
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 29.3 bits (64), Expect = 1.1
Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 13/99 (13%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQF-------------NAMVLELNASDDRGIGIVR 355
+G G+GKT A + + N E + G+
Sbjct: 39 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDP 98
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRI 394
D++ + S+++++++ +A+ + N R +
Sbjct: 99 DEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPV 137
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 28.8 bits (63), Expect = 1.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKL 330
LP++L G PG GKTT A K
Sbjct: 4 LPNILLTGTPGVGKTTLGKELASKS 28
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 28.8 bits (63), Expect = 1.2
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 302 DENELPHLLFYGPPGTGKTT 321
+++ + G PG GK T
Sbjct: 4 SPDQVSVIFVLGGPGAGKGT 23
>d1wy5a2 d.229.1.1 (A:217-311) TilS-like protein Aq_1887 {Aquifex
aeolicus [TaxId: 63363]}
Length = 95
Score = 27.4 bits (61), Expect = 1.2
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 375 IILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTR 424
++ E + + +AQ + + + +V+ L + P A+Q R R
Sbjct: 13 VLRAEREFLEEEAQKLYKEVKKGNCLDVKK------LKEKPLALQRRVIR 56
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/126 (10%), Positives = 35/126 (27%), Gaps = 9/126 (7%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVL---------ELNASDDRGIGIVRDQIF 359
+L G PG+GK+T K N + + +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
+ ++ ++ + + + A +++ V + +++
Sbjct: 65 FDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNS 124
Query: 420 SRCTRF 425
R T+
Sbjct: 125 KRGTKA 130
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 29.0 bits (63), Expect = 1.3
Identities = 16/150 (10%), Positives = 37/150 (24%), Gaps = 1/150 (0%)
Query: 310 LFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHK 369
+G TGKT A + D G +++ A +
Sbjct: 27 EMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG-TFRPERLLAVAERYGLSG 85
Query: 370 SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGP 429
S + T+ L + + +I + + + S
Sbjct: 86 SDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQ 145
Query: 430 LDSSLIMSRLDYDDISFFNIIIWYIKIQEI 459
+ + + L F ++ ++
Sbjct: 146 MHLARFLRMLLRLADEFGVAVVITNQVVAQ 175
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 28.4 bits (62), Expect = 1.3
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 309 LLFYGPPGTGKTTTILACARKL 330
++ G GK+ + L
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVL 27
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 28.5 bits (63), Expect = 1.5
Identities = 14/112 (12%), Positives = 36/112 (32%), Gaps = 17/112 (15%)
Query: 255 ATAHADEVNEDTVYNSVGYPTKTEITNILRWLLNESMDLCYK-----------INRFIDE 303
A+++ + + + ++ + ++ Y + I
Sbjct: 35 VLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPH 94
Query: 304 NELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR 355
+ +F G G GK++ + A + +L + E++ RG R
Sbjct: 95 FQDKTTVFAGQSGVGKSSLLNAISPELGLRTN------EISEHLGRGKHTTR 140
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 29.1 bits (64), Expect = 1.5
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTM 367
HLL G GTGK+ + A ++++ N G +D I +T
Sbjct: 52 HLLVNGATGTGKSVLLRELAYTGL-LRGDRMVIVDPNGDMLSKFGRDKDIILNPYDQRTK 110
Query: 368 H 368
Sbjct: 111 G 111
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation
factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Length = 213
Score = 28.6 bits (63), Expect = 1.6
Identities = 24/155 (15%), Positives = 48/155 (30%), Gaps = 6/155 (3%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH 368
+ YG GTGKT + A + + + + + + I +F
Sbjct: 39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEF--RNMYK 96
Query: 369 KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFG 428
L+ + + Q I + I+ + S RF
Sbjct: 97 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRF- 155
Query: 429 PLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEK 463
I+ ++ D+ + F II +K +++ K
Sbjct: 156 ---EGGILVEIELDNKTRFKIIKEKLKEFNLELRK 187
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 28.4 bits (62), Expect = 1.7
Identities = 11/91 (12%), Positives = 22/91 (24%), Gaps = 1/91 (1%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH 368
++ G P GKT R L + + + F +
Sbjct: 5 IVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGL 63
Query: 369 KSSYKLIILDEADAMTNDAQNALRRIIEKFT 399
K + + D ++ + T
Sbjct: 64 KIRKQCALAALNDVRKFLSEEGGHVAVFDAT 94
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 28.0 bits (61), Expect = 1.9
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 313 GPPGTGKTTTILACARKL 330
G PG GKTT + +L
Sbjct: 7 GEPGVGKTTLVKKIVERL 24
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 28.5 bits (62), Expect = 2.0
Identities = 5/18 (27%), Positives = 6/18 (33%)
Query: 310 LFYGPPGTGKTTTILACA 327
+G TGKT
Sbjct: 41 EAFGEFRTGKTQLSHTLC 58
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 27.6 bits (60), Expect = 2.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 307 PHLLFYGPPGTGKTTTILACARKL 330
P + G PG+GK+T A+ L
Sbjct: 2 PKAVLVGLPGSGKSTIGRRLAKAL 25
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 28.0 bits (61), Expect = 3.0
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 313 GPPGTGKTTTILACARKLYTKAQFNAMVLE 342
PG GKT L + K ++L
Sbjct: 16 LHPGAGKTKRYLPAIVREAIKRGLRTLILA 45
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 27.1 bits (59), Expect = 3.1
Identities = 16/119 (13%), Positives = 35/119 (29%), Gaps = 21/119 (17%)
Query: 310 LFYGPPGTGKTTTILA--------CARKLYTKAQFNAMVLELNA--SDDRGIGIVRDQIF 359
+ P G+GK+T + A + A ++ D I I
Sbjct: 12 HLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTIT 71
Query: 360 QFASTKTMHK-----------SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCII 407
+ +Y +II DE + + + ++++ T ++
Sbjct: 72 TGSPITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVV 130
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.6 bits (60), Expect = 3.1
Identities = 11/101 (10%), Positives = 22/101 (21%), Gaps = 5/101 (4%)
Query: 310 LFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHK 369
L G GTGKT + + + + + + + +
Sbjct: 30 LATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ-----LLRNAYSWGMDFEEME 84
Query: 370 SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNY 410
L I+ + E I +
Sbjct: 85 RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSL 125
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 27.0 bits (58), Expect = 4.1
Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 8/168 (4%)
Query: 308 HLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTM 367
++ GP G GK+T A++L N + + ++ G +F +
Sbjct: 4 NIFLVGPMGAGKSTIGRQLAQQL------NMEFYDSDQEIEKRTGADVGWVFDLEGEEGF 57
Query: 368 HKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRF 427
K+I A + + + YL +R R +
Sbjct: 58 RDREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKK 117
Query: 428 GPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIE-KGLALTDILTEI 474
PL R + + Y +I ++ I + + +I
Sbjct: 118 RPLLHVETPPREVLEAL-ANERNPLYEEIADVTIRTDDQSAKVVANQI 164
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 27.2 bits (59), Expect = 4.1
Identities = 23/158 (14%), Positives = 47/158 (29%), Gaps = 12/158 (7%)
Query: 309 LLFYGPPGTGKTT-----------TILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQ 357
+ G PG+GK T L+ L + Q + E+ A+ + IV
Sbjct: 9 VFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSI 68
Query: 358 IFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPA 417
+ + + K ++D + N+ ++ F +
Sbjct: 69 VTVKLLKNAIDANQGKNFLVDGFP-RNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQR 127
Query: 418 IQSRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIK 455
+ R + I R + ++ +I Y K
Sbjct: 128 LLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNK 165
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 26.9 bits (58), Expect = 4.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 308 HLLFYGPPGTGKTTTILACARKL 330
++L G PGTGKT+ A +L
Sbjct: 7 NILITGTPGTGKTSMAEMIAAEL 29
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 27.0 bits (58), Expect = 4.5
Identities = 19/181 (10%), Positives = 43/181 (23%), Gaps = 8/181 (4%)
Query: 303 ENELPHLLFYGPPGTGKTTTILA---CARKLYTKAQFNAMVLELNASDDRGIGIVRDQIF 359
E LP + G GK++ I + T ++ + + V +
Sbjct: 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGY 79
Query: 360 QFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQ 419
FA + ++ +I + +N + P I
Sbjct: 80 GFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIV 139
Query: 420 SRCTRFRFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEISLLVH 479
+ + I ++ E + I +++
Sbjct: 140 IATKADKIPKGKWDKHA-----KVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194
Query: 480 R 480
R
Sbjct: 195 R 195
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 27.5 bits (60), Expect = 4.5
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 212 DAMTNDAQNALRRKLPVTPDGKKAIIDLSDGD 243
+ N N + R TP+ KKAII D
Sbjct: 55 NGQLNACYNCVDRHALKTPN-KKAIIFEGDEP 85
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal
domain {Ureaplasma urealyticum [TaxId: 2130]}
Length = 139
Score = 26.6 bits (58), Expect = 4.6
Identities = 14/91 (15%), Positives = 23/91 (25%), Gaps = 16/91 (17%)
Query: 310 LFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVR-------------- 355
GP GKT ++ + A +V D R I ++
Sbjct: 6 FITGPMFAGKTAELIRRLHR-LEYADVKYLVF-KPKIDTRSIRNIQSRTGTSLPSVEVES 63
Query: 356 DQIFQFASTKTMHKSSYKLIILDEADAMTND 386
K+I +DE +
Sbjct: 64 APEILNYIMSNSFNDETKVIGIDEVQFFDDR 94
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 27.4 bits (59), Expect = 4.7
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 310 LFYGPPGTGKTTTILACARKLYTKAQFNA 338
L G G+GK++ + A LY +
Sbjct: 27 LIIGQNGSGKSSLLDAILVGLYWPLRIKD 55
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 26.8 bits (59), Expect = 4.9
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 309 LLFYGPPGTGKTTTILACARK 329
+L G G GK+ T L ++
Sbjct: 18 VLITGDSGIGKSETALELIKR 38
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 26.9 bits (58), Expect = 5.2
Identities = 19/148 (12%), Positives = 42/148 (28%), Gaps = 8/148 (5%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH 368
+ GP G GK+TT A +L A ++ D++
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITD 64
Query: 369 KSSYKL----IILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCT- 423
+ L ++ + A ++A+ + + K I L + R
Sbjct: 65 LTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVD---DVEIRFIILWTNREELLRRDAL 121
Query: 424 RFRFGPLDSSLIMSRLDYDDISFFNIII 451
R + + + +++
Sbjct: 122 RKKDEQMGERCLELVEEFESKGIDERYF 149
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal
domain {Clostridium acetobutylicum [TaxId: 1488]}
Length = 141
Score = 26.2 bits (57), Expect = 5.7
Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 10/95 (10%)
Query: 310 LFYGPPGTGKTTTILACARKLYTKAQFNAMVL---------ELNASDDRGIGIVRDQIFQ 360
+ GP +GK+ ++ R+ A+ V + + G I
Sbjct: 11 VIVGPMYSGKSEELIRRIRR-AKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKN 69
Query: 361 FASTKTMHKSSYKLIILDEADAMTNDAQNALRRII 395
+ ++I +DE ++ + +I
Sbjct: 70 SREILKYFEEDTEVIAIDEVQFFDDEIVEIVNKIA 104
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 26.4 bits (58), Expect = 5.8
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 309 LLFYGPPGTGKTTTILACARK 329
+L G G GK+ T L ++
Sbjct: 17 VLITGDSGVGKSETALELVQR 37
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 27.2 bits (59), Expect = 5.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 313 GPPGTGKTTTILACARKLY 331
G PG GK+TTI A L
Sbjct: 58 GVPGVGKSTTIDALGSLLT 76
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 26.2 bits (56), Expect = 5.9
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMV 340
+ PG GKT L + + +V
Sbjct: 10 TVLDFHPGAGKTRRFLPQILAECARRRLRTLV 41
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 26.4 bits (57), Expect = 6.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 309 LLFYGPPGTGKTT 321
++ GPPG GK T
Sbjct: 5 MVLIGPPGAGKGT 17
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 26.6 bits (58), Expect = 6.1
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 6/66 (9%)
Query: 290 SMDLCYKINRFIDENELPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDR 349
S I + + G G GK++ + A L V E++ R
Sbjct: 79 SAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGL------KLRVSEVSEKLQR 132
Query: 350 GIGIVR 355
G
Sbjct: 133 GRHTTT 138
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 26.4 bits (57), Expect = 6.3
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 309 LLFYGPPGTGKTT 321
+ GPPG GK T
Sbjct: 6 AVLLGPPGAGKGT 18
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 27.2 bits (59), Expect = 6.3
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 308 HLLFYGPPGTGKTTTILA 325
LL G+GKT +
Sbjct: 26 PLLIMAGAGSGKTRVLTH 43
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 26.4 bits (57), Expect = 6.6
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 308 HLLFYGPPGTGKTT 321
+L+ G PG GK T
Sbjct: 2 NLVLMGLPGAGKGT 15
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 26.4 bits (57), Expect = 6.8
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 307 PHLLFYGPPGTGKTT 321
++ G P +GK T
Sbjct: 4 LKVMISGAPASGKGT 18
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 26.9 bits (58), Expect = 6.8
Identities = 28/144 (19%), Positives = 46/144 (31%), Gaps = 12/144 (8%)
Query: 309 LLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMH 368
L F G G GKT+ A A +L A+ VL ++ +G V Q
Sbjct: 11 LFFTGKGGVGKTSISCATAIRL---AEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIAS 67
Query: 369 KSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFG 428
A+ D Q A ++ + ++ + + +S I + CT
Sbjct: 68 VPGL--------SALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAA 119
Query: 429 PLDSSLIMSRLDYDDISFFNIIIW 452
D + F +II
Sbjct: 120 -FDEFTGLLTDASLLTRFDHIIFD 142
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 25.8 bits (56), Expect = 7.3
Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 10/125 (8%)
Query: 310 LFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTKTMHK 369
+ GP +GK+T ++ R+ + AQ+ +V++ +
Sbjct: 6 VILGPMFSGKSTELMRRVRR-FQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLL 64
Query: 370 SSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRFRFGP 429
L A ++ Q F V FC + + F+ P
Sbjct: 65 RDVAQEALGVAVIGIDEGQF--------FPDIVEFCEAMANA-GKTVIVAALDGTFQRKP 115
Query: 430 LDSSL 434
+ L
Sbjct: 116 FGAIL 120
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 26.4 bits (57), Expect = 8.1
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 308 HLLFYGPPGTGKTT 321
+++ G PG GK T
Sbjct: 2 NIVLMGLPGAGKGT 15
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 26.0 bits (56), Expect = 8.2
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 309 LLFYGPPGTGKTTTILACARKL 330
++ G PG GK+T I
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVSA 38
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 26.3 bits (57), Expect = 8.4
Identities = 20/178 (11%), Positives = 47/178 (26%), Gaps = 5/178 (2%)
Query: 306 LPHLLFYGPPGTGKTTTILACARKLYTKAQFNAMVLELNASDDRGIGIVRDQIFQFASTK 365
L G PG+GK T + ++ + + D+ G + + +
Sbjct: 6 LLRAAIMGAPGSGKGTV----SSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQ 61
Query: 366 TMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIICNYLSKIPPAIQSRCTRF 425
+ L + N L + + +
Sbjct: 62 GKLIPDDVMTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIK 121
Query: 426 RFGPLDSSLIMSRLDYDDISFFNIIIWYIKIQEIKIEKGLALTDILTEI-SLLVHRLE 482
+ ++ RL + ++ +Y K ++ G I + + L +L
Sbjct: 122 QRLTDRPETVVKRLKAYEAQTEPVLEYYRKKGVLETFSGTETNKIWPHVYAFLQTKLP 179
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 26.6 bits (58), Expect = 8.4
Identities = 19/133 (14%), Positives = 36/133 (27%), Gaps = 13/133 (9%)
Query: 302 DENELPHLLFYGPPGTGKTTTILACARKL-----------YTKAQFNAMVLELNASD--D 348
E ++L GP G GKT A+ +T+ + ++ D D
Sbjct: 45 HEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 104
Query: 349 RGIGIVRDQIFQFASTKTMHKSSYKLIILDEADAMTNDAQNALRRIIEKFTTNVRFCIIC 408
+ +VR Q + + +++ A + R +
Sbjct: 105 SAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLRE 164
Query: 409 NYLSKIPPAIQSR 421
L I
Sbjct: 165 GQLDDKEIEIDVS 177
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 26.9 bits (59), Expect = 8.5
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 212 DAMTNDAQNALRRKLPVTPDGKKAIIDLSD 241
D N A N L R L D + AII D
Sbjct: 68 DGTLNLAANCLDRHLQENGD-RTAIIWEGD 96
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 26.1 bits (56), Expect = 8.6
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 309 LLFYGPPGTGKTT 321
+ G PG GK T
Sbjct: 4 VFVLGGPGAGKGT 16
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 26.0 bits (56), Expect = 8.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 308 HLLFYGPPGTGKTT 321
+L GPPG GK T
Sbjct: 2 RVLLLGPPGAGKGT 15
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 26.5 bits (57), Expect = 8.7
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 310 LFYGPPGTGKTTTILACARKLYTKAQFNAMV 340
+ G GK+T + A + T +
Sbjct: 39 MVTSGSGMGKSTFVRQQALQWGTAMGKKVGL 69
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 26.0 bits (56), Expect = 8.8
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 309 LLFYGPPGTGKTT 321
++ G P GK T
Sbjct: 3 IILLGAPVAGKGT 15
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.379
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,901,968
Number of extensions: 89340
Number of successful extensions: 478
Number of sequences better than 10.0: 1
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 175
Length of query: 533
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 443
Effective length of database: 1,171,896
Effective search space: 519149928
Effective search space used: 519149928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)