Query psy429
Match_columns 243
No_of_seqs 308 out of 1938
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 21:45:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 3E-34 6.4E-39 256.6 10.8 140 101-240 5-144 (375)
2 KOG0676|consensus 100.0 4E-34 8.7E-39 250.6 7.8 132 102-236 8-139 (372)
3 KOG0677|consensus 100.0 6E-34 1.3E-38 234.2 7.3 140 101-240 4-145 (389)
4 PTZ00466 actin-like protein; P 100.0 1.9E-33 4E-38 251.8 11.0 138 102-240 13-150 (380)
5 PTZ00281 actin; Provisional 100.0 3.1E-33 6.8E-38 250.3 11.0 139 102-240 7-145 (376)
6 KOG0679|consensus 100.0 4.3E-33 9.3E-38 239.4 10.3 138 102-240 12-150 (426)
7 PTZ00004 actin-2; Provisional 100.0 1.4E-31 3E-36 239.9 10.7 139 102-240 7-145 (378)
8 PTZ00280 Actin-related protein 100.0 2.3E-31 5E-36 241.1 10.8 140 102-241 5-147 (414)
9 smart00268 ACTIN Actin. ACTIN 99.9 7E-28 1.5E-32 215.6 10.8 138 102-240 2-139 (373)
10 COG5277 Actin and related prot 99.9 7E-28 1.5E-32 217.8 9.8 138 103-240 8-150 (444)
11 PF00022 Actin: Actin; InterP 99.9 6.1E-28 1.3E-32 217.2 8.3 135 102-241 5-139 (393)
12 cd00012 ACTIN Actin; An ubiqui 99.9 2.8E-27 6.1E-32 211.6 10.4 139 103-241 1-140 (371)
13 KOG0681|consensus 99.9 1.2E-25 2.5E-30 200.6 9.1 136 101-241 23-161 (645)
14 KOG0678|consensus 99.9 5.8E-25 1.3E-29 185.9 5.8 138 102-240 5-150 (415)
15 PTZ00452 actin; Provisional 99.9 6.3E-23 1.4E-27 183.7 11.2 99 2-101 112-210 (375)
16 PTZ00281 actin; Provisional 99.9 1.5E-22 3.3E-27 181.4 11.1 100 1-101 112-211 (376)
17 KOG0676|consensus 99.9 4.4E-23 9.4E-28 181.2 6.7 109 2-113 111-225 (372)
18 PTZ00466 actin-like protein; P 99.9 2.6E-22 5.6E-27 179.9 11.5 99 2-101 118-216 (380)
19 KOG0677|consensus 99.9 4.6E-22 1E-26 164.2 8.8 125 2-127 113-263 (389)
20 KOG0680|consensus 99.9 2.3E-22 5.1E-27 169.9 7.3 132 101-240 3-137 (400)
21 PTZ00004 actin-2; Provisional 99.9 9.3E-22 2E-26 176.4 11.6 100 1-101 112-211 (378)
22 KOG0679|consensus 99.9 1.3E-21 2.8E-26 168.8 9.6 91 2-93 118-208 (426)
23 PTZ00280 Actin-related protein 99.8 1.1E-20 2.4E-25 171.4 11.7 99 2-101 114-222 (414)
24 PF00022 Actin: Actin; InterP 99.8 3.4E-20 7.3E-25 166.9 10.9 89 1-90 105-193 (393)
25 smart00268 ACTIN Actin. ACTIN 99.8 6.6E-19 1.4E-23 157.6 11.3 99 2-101 107-205 (373)
26 COG5277 Actin and related prot 99.8 5.1E-19 1.1E-23 160.3 9.6 99 2-101 118-226 (444)
27 cd00012 ACTIN Actin; An ubiqui 99.8 1.5E-18 3.3E-23 155.2 11.4 98 2-100 107-204 (371)
28 PRK13930 rod shape-determining 99.7 1.7E-16 3.8E-21 140.0 8.6 129 103-240 10-143 (335)
29 PRK13927 rod shape-determining 99.7 1.1E-16 2.3E-21 141.4 7.2 130 102-240 6-139 (334)
30 KOG0678|consensus 99.6 2.6E-16 5.5E-21 133.8 2.7 118 2-131 118-243 (415)
31 KOG0680|consensus 99.6 4.9E-15 1.1E-19 125.8 6.8 88 3-91 106-204 (400)
32 KOG0681|consensus 99.5 8.9E-14 1.9E-18 125.1 7.8 87 2-89 128-218 (645)
33 PRK13929 rod-share determining 99.4 7.5E-13 1.6E-17 117.0 8.6 128 103-240 6-141 (335)
34 TIGR00904 mreB cell shape dete 99.4 1.1E-12 2.4E-17 115.9 8.6 132 104-240 5-141 (333)
35 KOG0797|consensus 99.3 9.2E-12 2E-16 111.5 8.7 86 5-91 242-327 (618)
36 PRK13930 rod shape-determining 99.1 4.8E-10 1E-14 99.0 9.1 81 3-87 113-198 (335)
37 PRK13928 rod shape-determining 99.0 5.3E-10 1.1E-14 98.9 8.0 127 104-240 6-138 (336)
38 PRK13927 rod shape-determining 98.9 5.1E-09 1.1E-13 92.5 8.9 81 3-87 108-194 (334)
39 TIGR00904 mreB cell shape dete 98.9 1.1E-08 2.3E-13 90.5 10.1 81 2-87 110-196 (333)
40 PRK13929 rod-share determining 98.9 1.5E-08 3.3E-13 89.7 9.8 80 2-86 110-195 (335)
41 PRK13928 rod shape-determining 98.7 5.4E-08 1.2E-12 86.1 9.0 81 3-86 107-192 (336)
42 PF06723 MreB_Mbl: MreB/Mbl pr 98.7 3.2E-08 7E-13 86.9 5.9 128 103-239 3-135 (326)
43 KOG0797|consensus 98.4 7.6E-07 1.7E-11 80.5 8.3 81 160-240 178-271 (618)
44 PF06723 MreB_Mbl: MreB/Mbl pr 97.9 8.3E-05 1.8E-09 65.5 9.8 83 2-88 105-192 (326)
45 COG1077 MreB Actin-like ATPase 97.5 0.00062 1.3E-08 59.1 8.3 129 103-238 8-142 (342)
46 TIGR02529 EutJ ethanolamine ut 97.2 0.0021 4.6E-08 54.2 8.3 79 3-85 74-152 (239)
47 PRK15080 ethanolamine utilizat 96.9 0.0049 1.1E-07 52.9 8.6 77 5-85 103-179 (267)
48 TIGR01174 ftsA cell division p 96.8 0.0052 1.1E-07 55.1 7.6 69 13-84 166-239 (371)
49 TIGR03739 PRTRC_D PRTRC system 96.7 0.0059 1.3E-07 53.7 7.0 86 4-90 116-219 (320)
50 PRK09472 ftsA cell division pr 96.4 0.018 3.9E-07 52.7 8.8 75 6-84 168-247 (420)
51 CHL00094 dnaK heat shock prote 95.8 0.059 1.3E-06 51.8 9.6 83 2-86 147-237 (621)
52 TIGR02350 prok_dnaK chaperone 95.6 0.06 1.3E-06 51.4 8.7 82 3-86 143-233 (595)
53 TIGR01991 HscA Fe-S protein as 95.5 0.086 1.9E-06 50.5 9.4 83 3-87 142-232 (599)
54 PRK13917 plasmid segregation p 95.5 0.046 1E-06 48.7 7.0 71 17-88 151-234 (344)
55 PRK00290 dnaK molecular chaper 95.5 0.081 1.8E-06 50.9 9.1 83 2-86 145-235 (627)
56 PRK13410 molecular chaperone D 95.4 0.1 2.2E-06 50.7 9.5 83 2-86 147-237 (668)
57 TIGR01175 pilM type IV pilus a 95.4 0.1 2.2E-06 46.2 8.9 76 5-84 144-231 (348)
58 PRK05183 hscA chaperone protei 95.4 0.1 2.3E-06 50.1 9.5 83 3-87 162-252 (616)
59 TIGR02529 EutJ ethanolamine ut 95.2 0.043 9.2E-07 46.3 5.7 73 164-239 28-103 (239)
60 PLN03184 chloroplast Hsp70; Pr 95.2 0.13 2.8E-06 50.0 9.5 82 3-86 185-274 (673)
61 COG0849 ftsA Cell division ATP 95.2 0.065 1.4E-06 48.8 6.9 73 10-85 170-247 (418)
62 PTZ00400 DnaK-type molecular c 95.1 0.15 3.2E-06 49.5 9.6 82 3-86 187-276 (663)
63 PRK01433 hscA chaperone protei 95.0 0.13 2.7E-06 49.3 8.7 83 3-87 154-244 (595)
64 PTZ00009 heat shock 70 kDa pro 94.8 0.17 3.7E-06 49.0 9.0 82 3-86 153-244 (653)
65 PF00012 HSP70: Hsp70 protein; 94.5 0.16 3.4E-06 48.4 8.1 82 3-86 148-238 (602)
66 PRK11678 putative chaperone; P 94.5 0.33 7.2E-06 44.8 9.8 69 10-81 176-260 (450)
67 PRK13411 molecular chaperone D 94.3 0.24 5.1E-06 48.0 8.9 82 3-86 146-236 (653)
68 COG4820 EutJ Ethanolamine util 93.8 0.035 7.6E-07 45.4 1.8 65 13-80 115-179 (277)
69 PTZ00186 heat shock 70 kDa pre 93.8 0.39 8.4E-06 46.6 9.2 82 3-86 173-262 (657)
70 COG0443 DnaK Molecular chapero 93.0 0.58 1.3E-05 44.7 8.8 79 7-86 136-222 (579)
71 COG1077 MreB Actin-like ATPase 93.0 0.3 6.4E-06 42.8 6.2 80 4-87 115-199 (342)
72 PF06406 StbA: StbA protein; 92.9 0.23 5.1E-06 43.6 5.7 74 16-90 137-216 (318)
73 PF11104 PilM_2: Type IV pilus 91.8 0.42 9.1E-06 42.3 6.0 70 13-84 144-223 (340)
74 PRK15080 ethanolamine utilizat 91.0 1.2 2.6E-05 38.2 7.8 72 164-238 55-129 (267)
75 COG4972 PilM Tfp pilus assembl 90.6 0.42 9E-06 42.0 4.5 43 41-85 195-237 (354)
76 PLN03184 chloroplast Hsp70; Pr 86.9 1.6 3.5E-05 42.5 6.3 64 173-239 148-214 (673)
77 PF01968 Hydantoinase_A: Hydan 86.6 0.8 1.7E-05 39.8 3.7 30 35-64 73-102 (290)
78 TIGR02350 prok_dnaK chaperone 86.2 1.1 2.4E-05 42.9 4.7 42 197-239 131-172 (595)
79 CHL00094 dnaK heat shock prote 85.9 2 4.3E-05 41.4 6.3 64 173-239 111-177 (621)
80 PRK10719 eutA reactivating fac 85.0 0.73 1.6E-05 42.5 2.7 52 39-92 146-208 (475)
81 PF02541 Ppx-GppA: Ppx/GppA ph 84.2 2 4.4E-05 36.9 5.1 42 37-80 110-151 (285)
82 PTZ00400 DnaK-type molecular c 83.8 2.5 5.3E-05 41.1 5.9 44 196-240 174-217 (663)
83 PRK13410 molecular chaperone D 83.4 2.8 6E-05 40.8 6.1 42 197-239 136-177 (668)
84 TIGR01991 HscA Fe-S protein as 82.4 2.1 4.5E-05 41.1 4.8 62 175-239 107-171 (599)
85 PRK00290 dnaK molecular chaper 81.1 2 4.4E-05 41.4 4.2 43 196-239 133-175 (627)
86 PRK13411 molecular chaperone D 79.9 3.4 7.4E-05 40.1 5.4 43 196-239 133-175 (653)
87 PRK05183 hscA chaperone protei 79.6 3.6 7.8E-05 39.6 5.4 61 176-239 128-191 (616)
88 TIGR03123 one_C_unchar_1 proba 78.9 2.7 5.8E-05 37.1 3.9 28 37-64 126-153 (318)
89 PRK11678 putative chaperone; P 75.9 4.9 0.00011 37.2 4.9 45 196-240 149-200 (450)
90 PRK01433 hscA chaperone protei 74.6 7.6 0.00016 37.3 6.0 62 176-240 120-184 (595)
91 PTZ00009 heat shock 70 kDa pro 73.9 6.9 0.00015 38.0 5.6 43 196-239 140-182 (653)
92 cd08627 PI-PLCc_gamma1 Catalyt 73.7 6.4 0.00014 33.0 4.6 44 176-225 74-117 (229)
93 cd08630 PI-PLCc_delta3 Catalyt 73.4 6.3 0.00014 33.6 4.6 44 176-225 74-117 (258)
94 cd08626 PI-PLCc_beta4 Catalyti 73.4 6.2 0.00013 33.6 4.5 44 176-225 76-119 (257)
95 cd08629 PI-PLCc_delta1 Catalyt 73.0 6.2 0.00014 33.6 4.4 44 176-225 74-117 (258)
96 cd08632 PI-PLCc_eta1 Catalytic 72.8 7 0.00015 33.2 4.7 44 176-225 74-117 (253)
97 COG1548 Predicted transcriptio 72.5 2.7 5.8E-05 35.9 2.1 23 38-60 129-151 (330)
98 COG0443 DnaK Molecular chapero 72.4 15 0.00034 35.1 7.5 136 102-241 6-164 (579)
99 cd08596 PI-PLCc_epsilon Cataly 72.3 6.8 0.00015 33.3 4.5 44 176-225 74-117 (254)
100 PF14450 FtsA: Cell division p 72.3 10 0.00023 28.0 5.1 43 42-86 2-54 (120)
101 cd08595 PI-PLCc_zeta Catalytic 72.1 7 0.00015 33.3 4.6 44 176-225 74-117 (257)
102 cd08594 PI-PLCc_eta Catalytic 71.5 7.5 0.00016 32.5 4.5 44 176-225 74-117 (227)
103 cd08593 PI-PLCc_delta Catalyti 71.5 7 0.00015 33.4 4.4 44 176-225 74-117 (257)
104 cd08631 PI-PLCc_delta4 Catalyt 71.4 7 0.00015 33.3 4.4 44 176-225 74-117 (258)
105 cd08633 PI-PLCc_eta2 Catalytic 71.2 7.6 0.00016 33.0 4.5 44 176-225 74-117 (254)
106 TIGR03367 queuosine_QueD queuo 70.8 7.5 0.00016 27.5 3.9 50 168-224 42-91 (92)
107 cd08598 PI-PLC1c_yeast Catalyt 68.9 8.7 0.00019 32.2 4.4 44 176-225 74-117 (231)
108 cd08592 PI-PLCc_gamma Catalyti 68.6 9.1 0.0002 32.1 4.4 44 176-225 74-117 (229)
109 cd08591 PI-PLCc_beta Catalytic 68.2 9.2 0.0002 32.6 4.4 44 176-225 76-119 (257)
110 cd08558 PI-PLCc_eukaryota Cata 68.0 9.7 0.00021 31.9 4.5 44 176-225 74-117 (226)
111 cd08597 PI-PLCc_PRIP_metazoa C 67.0 9.7 0.00021 32.6 4.4 44 176-225 74-117 (260)
112 cd08624 PI-PLCc_beta2 Catalyti 64.5 12 0.00026 32.0 4.4 44 176-225 76-120 (261)
113 cd08628 PI-PLCc_gamma2 Catalyt 63.9 13 0.00027 31.7 4.5 44 176-225 74-117 (254)
114 TIGR03739 PRTRC_D PRTRC system 62.9 15 0.00033 32.1 5.0 129 106-238 2-152 (320)
115 cd08623 PI-PLCc_beta1 Catalyti 62.0 14 0.00031 31.5 4.5 44 176-225 76-120 (258)
116 PTZ00186 heat shock 70 kDa pre 60.9 22 0.00047 34.7 6.1 43 196-239 160-202 (657)
117 PRK11031 guanosine pentaphosph 59.9 13 0.00029 34.8 4.4 39 39-79 132-170 (496)
118 cd08625 PI-PLCc_beta3 Catalyti 59.7 15 0.00032 31.4 4.2 44 176-225 76-120 (258)
119 KOG0101|consensus 54.6 63 0.0014 31.2 7.8 75 10-85 162-246 (620)
120 TIGR00039 6PTHBS 6-pyruvoyl te 52.9 20 0.00044 26.8 3.6 52 168-224 44-95 (124)
121 cd08599 PI-PLCc_plant Catalyti 52.3 29 0.00062 29.1 4.6 48 176-230 74-121 (228)
122 smart00842 FtsA Cell division 51.5 15 0.00032 29.4 2.8 22 166-187 36-57 (187)
123 COG0145 HyuA N-methylhydantoin 50.9 26 0.00056 34.3 4.7 47 18-64 252-303 (674)
124 PLN02222 phosphoinositide phos 49.8 25 0.00054 33.7 4.3 44 176-225 176-219 (581)
125 PLN02952 phosphoinositide phos 49.8 27 0.00059 33.6 4.6 44 176-225 196-239 (599)
126 PLN02230 phosphoinositide phos 49.4 27 0.00058 33.6 4.5 44 176-225 187-230 (598)
127 TIGR03706 exo_poly_only exopol 49.2 19 0.0004 31.3 3.2 40 39-80 125-164 (300)
128 PF08735 DUF1786: Putative pyr 49.1 70 0.0015 27.3 6.5 66 15-84 138-213 (254)
129 PLN02228 Phosphoinositide phos 48.6 28 0.00061 33.2 4.5 44 176-225 179-222 (567)
130 PLN02223 phosphoinositide phos 46.9 32 0.0007 32.6 4.5 45 176-225 179-223 (537)
131 TIGR01568 A_thal_3678 uncharac 43.4 12 0.00027 24.9 0.9 40 203-243 6-45 (66)
132 PRK10854 exopolyphosphatase; P 43.3 20 0.00043 33.8 2.7 39 39-79 137-175 (513)
133 TIGR00241 CoA_E_activ CoA-subs 41.8 63 0.0014 27.0 5.3 47 42-88 3-49 (248)
134 COG0248 GppA Exopolyphosphatas 41.2 19 0.00041 33.8 2.1 39 38-78 128-166 (492)
135 KOG0169|consensus 40.7 43 0.00094 32.8 4.5 44 176-225 361-404 (746)
136 TIGR01319 glmL_fam conserved h 33.0 43 0.00093 31.1 3.0 59 3-62 193-272 (463)
137 cd00470 PTPS 6-pyruvoyl tetrah 32.7 56 0.0012 24.9 3.2 51 168-224 56-109 (135)
138 KOG0104|consensus 32.1 2E+02 0.0043 28.7 7.3 82 3-86 171-275 (902)
139 KOG1265|consensus 31.3 70 0.0015 32.3 4.2 43 176-224 388-430 (1189)
140 COG3732 SrlE Phosphotransferas 31.0 50 0.0011 28.3 2.9 53 73-130 36-88 (328)
141 TIGR00241 CoA_E_activ CoA-subs 30.7 89 0.0019 26.1 4.5 47 39-85 91-138 (248)
142 PF14401 RLAN: RimK-like ATPgr 30.5 2.1E+02 0.0045 22.3 6.1 53 175-230 66-118 (153)
143 PF08841 DDR: Diol dehydratase 30.0 1.7E+02 0.0038 25.6 6.0 83 5-90 96-183 (332)
144 TIGR00671 baf pantothenate kin 29.0 1.3E+02 0.0027 25.4 5.1 16 38-53 115-130 (243)
145 smart00148 PLCXc Phospholipase 28.7 1.2E+02 0.0026 22.9 4.5 42 177-224 74-115 (135)
146 TIGR01174 ftsA cell division p 27.9 54 0.0012 29.2 2.8 22 166-187 37-58 (371)
147 TIGR03192 benz_CoA_bzdQ benzoy 26.9 1.8E+02 0.0039 25.4 5.7 48 40-89 33-83 (293)
148 PF03612 EIIBC-GUT_N: Sorbitol 26.6 73 0.0016 25.7 3.0 52 74-130 36-87 (183)
149 PF02201 SWIB: SWIB/MDM2 domai 26.1 69 0.0015 21.6 2.5 33 172-205 20-52 (76)
150 COG1521 Pantothenate kinase ty 26.0 61 0.0013 27.6 2.6 56 3-59 65-141 (251)
151 PRK13329 pantothenate kinase; 25.7 62 0.0014 27.4 2.7 19 35-53 115-133 (249)
152 COG1880 CdhB CO dehydrogenase/ 25.7 1.2E+02 0.0026 24.0 3.9 38 195-233 35-72 (170)
153 KOG0100|consensus 25.4 2.2E+02 0.0048 26.3 6.0 62 21-83 202-272 (663)
154 COG1924 Activator of 2-hydroxy 25.3 2.3E+02 0.0049 25.8 6.1 52 39-90 135-186 (396)
155 PRK00976 hypothetical protein; 25.0 1.1E+02 0.0024 27.1 4.1 34 30-64 140-173 (326)
156 smart00732 YqgFc Likely ribonu 24.6 2.1E+02 0.0046 19.5 5.0 46 41-86 3-49 (99)
157 PF01242 PTPS: 6-pyruvoyl tetr 23.6 69 0.0015 23.6 2.3 50 168-223 42-94 (123)
158 PF07318 DUF1464: Protein of u 23.5 1.4E+02 0.0029 26.8 4.4 34 36-69 151-184 (343)
159 PF03309 Pan_kinase: Type III 21.7 53 0.0012 26.7 1.5 23 38-60 119-141 (206)
160 PF06277 EutA: Ethanolamine ut 21.2 1.1E+02 0.0024 28.5 3.5 52 39-92 143-205 (473)
161 COG1149 MinD superfamily P-loo 21.0 1.7E+02 0.0036 25.4 4.3 39 195-234 186-224 (284)
162 KOG0103|consensus 20.8 2.4E+02 0.0052 27.7 5.7 68 18-86 164-246 (727)
163 PRK05571 ribose-5-phosphate is 20.4 1.3E+02 0.0028 23.4 3.2 29 69-111 7-35 (148)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=3e-34 Score=256.62 Aligned_cols=140 Identities=56% Similarity=1.018 Sum_probs=127.8
Q ss_pred hheeeeccCCCccccCcCCCCCCCcccCcceeccCCCcccccCCCccccccchhhhccccccccCCCCCCcccCHHHHHH
Q psy429 101 LAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEK 180 (243)
Q Consensus 101 ~~~vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~p~~~G~i~d~d~~e~ 180 (243)
..+||||+||+++|+||||++.|++++||++|+++......+..+++.++|+++...+..+++++|+++|+|.|||.+|.
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e~ 84 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIEI 84 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHHH
Confidence 35899999999999999999999999999999987643222223456789999988888899999999999999999999
Q ss_pred HHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhcccc
Q psy429 181 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTI 240 (243)
Q Consensus 181 l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~ 240 (243)
+|+|+|++.|+++|+++|+++|||+++++..|++++|+|||+|++|+++++++++||+|-
T Consensus 85 iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya 144 (375)
T PTZ00452 85 IWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYT 144 (375)
T ss_pred HHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999984
No 2
>KOG0676|consensus
Probab=100.00 E-value=4e-34 Score=250.64 Aligned_cols=132 Identities=86% Similarity=1.351 Sum_probs=126.1
Q ss_pred heeeeccCCCccccCcCCCCCCCcccCcceeccCCCcccccCCCccccccchhhhccccccccCCCCCCcccCHHHHHHH
Q psy429 102 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 181 (243)
Q Consensus 102 ~~vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~p~~~G~i~d~d~~e~l 181 (243)
.+||+|+||..+|+||||++.|+.++||++|+++....+.+...++.++|+++...+ .+++|+++|.|+|||++|.+
T Consensus 8 ~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~---~l~~Pie~Giv~~wd~me~i 84 (372)
T KOG0676|consen 8 QAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKR---TLKYPIERGIVTDWDDMEKI 84 (372)
T ss_pred ceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccc---cccCccccccccchHHHHHH
Confidence 799999999999999999999999999999999988877777888999999998888 78999999999999999999
Q ss_pred HHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhh
Q psy429 182 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVN 236 (243)
Q Consensus 182 ~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~l 236 (243)
|+|+|++.|++.|++||+|+|||+++|+.+||+++|+|||.||+|++|++.+++|
T Consensus 85 w~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl 139 (372)
T KOG0676|consen 85 WHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL 139 (372)
T ss_pred HHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998877
No 3
>KOG0677|consensus
Probab=100.00 E-value=6e-34 Score=234.19 Aligned_cols=140 Identities=47% Similarity=0.843 Sum_probs=129.2
Q ss_pred hheeeeccCCCccccCcCCCCCCCcccCcceeccCCCcc--cccCCCccccccchhhhccccccccCCCCCCcccCHHHH
Q psy429 101 LAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV--MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 178 (243)
Q Consensus 101 ~~~vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~l~~p~~~G~i~d~d~~ 178 (243)
+.+||+|+|++..|+||||+..|.++||+.||+|--+.. .....-++..+|+++.+.|..+++.||+++|.|.|||++
T Consensus 4 ~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnwddM 83 (389)
T KOG0677|consen 4 RNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNWDDM 83 (389)
T ss_pred CCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccChHHH
Confidence 468999999999999999999999999999999853321 122334689999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhcccc
Q psy429 179 EKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTI 240 (243)
Q Consensus 179 e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~ 240 (243)
+++|+|.|.++|+++|+++.+++||||++|.++||||.|+|||+|+|.++|++.|++|++|-
T Consensus 84 ~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYA 145 (389)
T KOG0677|consen 84 EHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYA 145 (389)
T ss_pred HHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999995
No 4
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=1.9e-33 Score=251.78 Aligned_cols=138 Identities=51% Similarity=1.012 Sum_probs=126.9
Q ss_pred heeeeccCCCccccCcCCCCCCCcccCcceeccCCCcccccCCCccccccchhhhccccccccCCCCCCcccCHHHHHHH
Q psy429 102 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 181 (243)
Q Consensus 102 ~~vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~p~~~G~i~d~d~~e~l 181 (243)
.+||||+||+++|+||||++.|+.++||++|+++......+..+++.++|+++...++.+++++|+++|+|.|||.+|.+
T Consensus 13 ~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~~e~i 92 (380)
T PTZ00466 13 QPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWNDMENI 92 (380)
T ss_pred CeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHHHHHHH
Confidence 48999999999999999999999999999999886543333344578899999888888899999999999999999999
Q ss_pred HHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhcccc
Q psy429 182 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTI 240 (243)
Q Consensus 182 ~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~ 240 (243)
|+|+| +.|+++++++|+++||++++++..|++++|+|||+|++|+++++++++||+|-
T Consensus 93 w~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a 150 (380)
T PTZ00466 93 WIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYS 150 (380)
T ss_pred HHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHh
Confidence 99998 78999999999999999999999999999999999999999999999999984
No 5
>PTZ00281 actin; Provisional
Probab=100.00 E-value=3.1e-33 Score=250.30 Aligned_cols=139 Identities=94% Similarity=1.439 Sum_probs=128.4
Q ss_pred heeeeccCCCccccCcCCCCCCCcccCcceeccCCCcccccCCCccccccchhhhccccccccCCCCCCcccCHHHHHHH
Q psy429 102 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 181 (243)
Q Consensus 102 ~~vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~p~~~G~i~d~d~~e~l 181 (243)
.+||||+||+++|+||||++.|+.++||++|++++.....+.++++.++|+++...+..+++++|+++|.|.|||++|.+
T Consensus 7 ~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dwd~~e~l 86 (376)
T PTZ00281 7 QALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 86 (376)
T ss_pred CeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcCHHHHHHH
Confidence 48999999999999999999999999999999877544334455678899998877888999999999999999999999
Q ss_pred HHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhcccc
Q psy429 182 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTI 240 (243)
Q Consensus 182 ~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~ 240 (243)
|+|+|++.|+++|+++|+++|||+++++..|++++|+|||+|++|+++++++++||+|-
T Consensus 87 ~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya 145 (376)
T PTZ00281 87 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 145 (376)
T ss_pred HHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHh
Confidence 99999889999999999999999999999999999999999999999999999999984
No 6
>KOG0679|consensus
Probab=100.00 E-value=4.3e-33 Score=239.42 Aligned_cols=138 Identities=43% Similarity=0.771 Sum_probs=123.4
Q ss_pred heeeeccCCCccccCcCCCCCCCcccCcceeccCCCcccccCCCccccccchh-hhccccccccCCCCCCcccCHHHHHH
Q psy429 102 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA-QSKRGILTLKYPIEHGIVTNWDDMEK 180 (243)
Q Consensus 102 ~~vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~l~~p~~~G~i~d~d~~e~ 180 (243)
.+||||+||+++|+||||+|.|++++||++|...+... ....++.+|++.++ ..+|+.+++..|+++|.|.|||..+.
T Consensus 12 ~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~-d~~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~dWD~~~~ 90 (426)
T KOG0679|consen 12 SALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDG-DAEDKKGYYVDENAIHVPRPGMEVKTPIKNGLVEDWDLFEM 90 (426)
T ss_pred ceEEEeCCCceEeccccCCCCccccccceeeeeecccC-ccccccceEeechhccCCCCCCeeccchhcCCcccHHHHHH
Confidence 68999999999999999999999999999996422111 11223347888776 67889999999999999999999999
Q ss_pred HHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhcccc
Q psy429 181 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTI 240 (243)
Q Consensus 181 l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~ 240 (243)
+|+|.|.++|+++|++||+|+|||++|++..|||++|+|||+|+||++|++++++|++|-
T Consensus 91 ~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA 150 (426)
T KOG0679|consen 91 QWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFA 150 (426)
T ss_pred HHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999874
No 7
>PTZ00004 actin-2; Provisional
Probab=99.97 E-value=1.4e-31 Score=239.93 Aligned_cols=139 Identities=86% Similarity=1.325 Sum_probs=127.4
Q ss_pred heeeeccCCCccccCcCCCCCCCcccCcceeccCCCcccccCCCccccccchhhhccccccccCCCCCCcccCHHHHHHH
Q psy429 102 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 181 (243)
Q Consensus 102 ~~vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~p~~~G~i~d~d~~e~l 181 (243)
.+||||+||+++|+||||++.|+.++||++|+++.+....+..++..++|+++...++.+++++|+++|+|.|||++|.+
T Consensus 7 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d~~e~i 86 (378)
T PTZ00004 7 NAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDDMEKI 86 (378)
T ss_pred CeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCHHHHHHH
Confidence 47999999999999999999999999999999876543333345577899998777777889999999999999999999
Q ss_pred HHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhcccc
Q psy429 182 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTI 240 (243)
Q Consensus 182 ~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~ 240 (243)
|+|+|.+.|+++++++|+++|||+++++..|++++|+|||+|++|+++++++++||+|-
T Consensus 87 ~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya 145 (378)
T PTZ00004 87 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYA 145 (378)
T ss_pred HHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHh
Confidence 99999889999999999999999999999999999999999999999999999999984
No 8
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.97 E-value=2.3e-31 Score=241.12 Aligned_cols=140 Identities=43% Similarity=0.791 Sum_probs=125.8
Q ss_pred heeeeccCCCccccCcCCCCCCCcccCcceeccCCCccc---ccCCCccccccchhhhccccccccCCCCCCcccCHHHH
Q psy429 102 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM---VGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 178 (243)
Q Consensus 102 ~~vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~l~~p~~~G~i~d~d~~ 178 (243)
.+||||+||+++||||||++.|++++||++|+++..... .+....+.++|+++...+..+++++|+++|+|.|||++
T Consensus 5 ~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd~~ 84 (414)
T PTZ00280 5 PVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVEDWDLM 84 (414)
T ss_pred CeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCCHHHH
Confidence 489999999999999999999999999999998663211 11123357899999888888999999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhccccc
Q psy429 179 EKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTIK 241 (243)
Q Consensus 179 e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~~ 241 (243)
|.+|+|+|++.|+++|+++|+++|||+++++..|++++|+|||+|++|+++++++++||+|-.
T Consensus 85 e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~ 147 (414)
T PTZ00280 85 EKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRAS 147 (414)
T ss_pred HHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhh
Confidence 999999998899999999999999999999999999999999999999999999999999953
No 9
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.95 E-value=7e-28 Score=215.57 Aligned_cols=138 Identities=71% Similarity=1.159 Sum_probs=124.3
Q ss_pred heeeeccCCCccccCcCCCCCCCcccCcceeccCCCcccccCCCccccccchhhhccccccccCCCCCCcccCHHHHHHH
Q psy429 102 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 181 (243)
Q Consensus 102 ~~vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~p~~~G~i~d~d~~e~l 181 (243)
.+||||+||+++|+||++++.|++++||+++++++.....+ +.+..++|+++...++...+++|+++|.|.|||.+|.+
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~-~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i 80 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVG-DAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKI 80 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccC-CCcceEecchhhhcCCCceecCCCcCCEEeCHHHHHHH
Confidence 58999999999999999999999999999999865432111 23467899998777777789999999999999999999
Q ss_pred HHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhcccc
Q psy429 182 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTI 240 (243)
Q Consensus 182 ~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~ 240 (243)
|+|+|.+.|+++++++|+++++|.++++..|++++|++||.|++|++++.+++++|+|-
T Consensus 81 ~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~ 139 (373)
T smart00268 81 WDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYA 139 (373)
T ss_pred HHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHh
Confidence 99999888999999999999999999999999999999999999999999999999985
No 10
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.95 E-value=7e-28 Score=217.85 Aligned_cols=138 Identities=60% Similarity=1.053 Sum_probs=125.8
Q ss_pred eeeeccCCCccccCcCCCCCCCcccCcceeccC-CCcccccCCCccccccchhhhccc--cccccCCCCCCcccCHHHHH
Q psy429 103 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR-HQGVMVGMGQKDSYVGDEAQSKRG--ILTLKYPIEHGIVTNWDDME 179 (243)
Q Consensus 103 ~vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~-~~~~~~~~~~~~~~~g~~~~~~~~--~~~l~~p~~~G~i~d~d~~e 179 (243)
++|||+||+.+|+||+|++.|++++|+++++.+ ....+.....++.++|+++...++ ..++++|+++|.|.|||++|
T Consensus 8 ~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~W~~~e 87 (444)
T COG5277 8 TIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILNWDAME 87 (444)
T ss_pred eEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCCcHHHH
Confidence 499999999999999999999999999999986 333333445678899999977776 78899999999999999999
Q ss_pred HHHHHHhhc--cccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhcccc
Q psy429 180 KIWHHTFYN--ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTI 240 (243)
Q Consensus 180 ~l~~~~~~~--~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~ 240 (243)
++|+|+|++ .+..++.+||+++|||+++++++|++++|++||+|+||+++++.+++|++|-
T Consensus 88 ~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya 150 (444)
T COG5277 88 QIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYA 150 (444)
T ss_pred HHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHh
Confidence 999999998 6888899999999999999999999999999999999999999999999985
No 11
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.95 E-value=6.1e-28 Score=217.20 Aligned_cols=135 Identities=49% Similarity=0.910 Sum_probs=117.6
Q ss_pred heeeeccCCCccccCcCCCCCCCcccCcceeccCCCcccccCCCccccccchhhhccccccccCCCCCCcccCHHHHHHH
Q psy429 102 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 181 (243)
Q Consensus 102 ~~vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~p~~~G~i~d~d~~e~l 181 (243)
.+||||+||+++|+||||++.|+.++||++++++.... ....++|++....+....+++|+++|.+.|||.++.+
T Consensus 5 ~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~~e~i 79 (393)
T PF00022_consen 5 KPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNS-----SNDYYVGDEALSPRSNLELRSPIENGVIVDWDALEEI 79 (393)
T ss_dssp SEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSS-----SSSCEETHHHHHTGTGEEEEESEETTEESSHHHHHHH
T ss_pred CEEEEECCCceEEEEECCCCCCCCcCCCcccccccccc-----ceeEEeecccccchhheeeeeeccccccccccccccc
Confidence 68999999999999999999999999999998876431 1257889886666777889999999999999999999
Q ss_pred HHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhccccc
Q psy429 182 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTIK 241 (243)
Q Consensus 182 ~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~~ 241 (243)
|+|+|.+.|+++++++|++++||+++++..|++++|+|||+|++|+++++++++||+|-.
T Consensus 80 ~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~ 139 (393)
T PF00022_consen 80 WDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYAS 139 (393)
T ss_dssp HHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHT
T ss_pred cccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeeccccccccc
Confidence 999999889999999999999999999999999999999999999999999999999854
No 12
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.94 E-value=2.8e-27 Score=211.59 Aligned_cols=139 Identities=73% Similarity=1.201 Sum_probs=124.6
Q ss_pred eeeeccCCCccccCcCCCCCCCcccCcceeccCCCcccccCCCccccccchhhhcccc-ccccCCCCCCcccCHHHHHHH
Q psy429 103 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKI 181 (243)
Q Consensus 103 ~vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~l~~p~~~G~i~d~d~~e~l 181 (243)
+||||+||+++|+||+|++.|++++||++++++......+.+++..++|+++...++. ..+++|+++|.+.|||.++.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~ 80 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI 80 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence 5899999999999999999999999999999876533233345678999998665553 788999999999999999999
Q ss_pred HHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhccccc
Q psy429 182 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTIK 241 (243)
Q Consensus 182 ~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~~ 241 (243)
|+|+|.+.+..+++++|+++++|+++++..|++++|+|||+|++|++++.+++++|+|-.
T Consensus 81 ~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~ 140 (371)
T cd00012 81 WDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYAS 140 (371)
T ss_pred HHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhc
Confidence 999998888888999999999999999999999999999999999999999999999853
No 13
>KOG0681|consensus
Probab=99.92 E-value=1.2e-25 Score=200.59 Aligned_cols=136 Identities=35% Similarity=0.644 Sum_probs=119.6
Q ss_pred hheeeeccCCCccccCcCCCCCCCcccCcceeccCCCcccccCCCccccccchhhhccc-cccccCCCCCCcccCHHHHH
Q psy429 101 LAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG-ILTLKYPIEHGIVTNWDDME 179 (243)
Q Consensus 101 ~~~vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~l~~p~~~G~i~d~d~~e 179 (243)
..+|||||||+.+||||+|+..|+.+|++++.++++... +....++|++...... ....+.|+++.+|+||+.+|
T Consensus 23 ~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~----~~s~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~E 98 (645)
T KOG0681|consen 23 TIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKL----GASVTLVGNDILNFQGVRSSPRSPFDRNVVTNWELME 98 (645)
T ss_pred CCcEEEeCCceeEeecccCCCCccchhhhhhcccccccc----ccccccccchhhhhhhhhccCCCCCcCCccccHHHHH
Confidence 468999999999999999999999999999999986432 2334578888744332 24578899999999999999
Q ss_pred HHHHHHhhccccCCC--CCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhccccc
Q psy429 180 KIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTIK 241 (243)
Q Consensus 180 ~l~~~~~~~~L~~~~--~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~~ 241 (243)
.++||+| .+|++++ -+||+++||+.++|...|++|+|+|||+||||+|.+.-+++.|+|-+
T Consensus 99 ~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN 161 (645)
T KOG0681|consen 99 QILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHN 161 (645)
T ss_pred HHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhc
Confidence 9999998 5899987 58999999999999999999999999999999999999999999854
No 14
>KOG0678|consensus
Probab=99.91 E-value=5.8e-25 Score=185.91 Aligned_cols=138 Identities=42% Similarity=0.773 Sum_probs=122.0
Q ss_pred heeeeccCCCccccCcCCCCCCCcccCcceeccCCCcc--------cccCCCccccccchhhhccccccccCCCCCCccc
Q psy429 102 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV--------MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 173 (243)
Q Consensus 102 ~~vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~l~~p~~~G~i~ 173 (243)
.+.|+|+|+..+|.||+|+..|++++|++++......+ ..+..+.++++|+++.. ...+.+.+|+++|.+.
T Consensus 5 ~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~-~~~ysl~ypiRhg~ve 83 (415)
T KOG0678|consen 5 LPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALD-ATTYSLKYPIRHGQVE 83 (415)
T ss_pred CceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHh-hcccccccceeccccc
Confidence 35999999999999999999999999999876432111 11223346899999987 5588999999999999
Q ss_pred CHHHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhcccc
Q psy429 174 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTI 240 (243)
Q Consensus 174 d~d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~ 240 (243)
|||.||++|+..+++.|..+|++|-.|||||+++++++|+.++|+|||.||+|.+|++-+++||+-.
T Consensus 84 ~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaa 150 (415)
T KOG0678|consen 84 DWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAA 150 (415)
T ss_pred cHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998754
No 15
>PTZ00452 actin; Provisional
Probab=99.89 E-value=6.3e-23 Score=183.65 Aligned_cols=99 Identities=53% Similarity=0.879 Sum_probs=93.7
Q ss_pred chHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCCceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHHH
Q psy429 2 VGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 81 (243)
Q Consensus 2 ~~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l~ 81 (243)
+...|++++|+|||+|++|++++.+++ +|++|++|++||+|||+|++.|+|+||+||++++++++|+++||+++|++|+
T Consensus 112 ~~~~Re~l~eilFE~~~vp~~~~~~~~-~lslya~g~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~ 190 (375)
T PTZ00452 112 SKFNRERMTQIMFETFNTPCLYISNEA-VLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLT 190 (375)
T ss_pred CHHHHHHHHHHHhhccCCceEEEechH-HHHHHHCCCceeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHH
Confidence 567899999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccccchhHHhhhh
Q psy429 82 KILTERGYSFTTTAEREIVL 101 (243)
Q Consensus 82 ~ll~~~~~~~~~~~~~~~v~ 101 (243)
++|.++++++....++++++
T Consensus 191 ~lL~~~~~~~~~~~~~~~~~ 210 (375)
T PTZ00452 191 QILQELGYSLTEPHQRIIVK 210 (375)
T ss_pred HHHHhcCCCCCCHHHHHHHH
Confidence 99999998887766666665
No 16
>PTZ00281 actin; Provisional
Probab=99.88 E-value=1.5e-22 Score=181.37 Aligned_cols=100 Identities=86% Similarity=1.238 Sum_probs=94.3
Q ss_pred CchHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCCceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHH
Q psy429 1 MVGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 80 (243)
Q Consensus 1 ~~~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l 80 (243)
++...||+++|++||.|++|++++.+++ +|++|++|++||+|||+|++.|+|+||+||+++.++++++++||++++++|
T Consensus 112 ~~~~~re~l~e~lFE~~~vp~~~~~~~~-~ls~ya~g~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L 190 (376)
T PTZ00281 112 NPKANREKMTQIMFETFNTPAMYVAIQA-VLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYM 190 (376)
T ss_pred CcHHHHHHHHHHHhcccCCceeEeeccH-HHHHHhcCCceEEEEECCCceEEEEEEEecccchhheeeccCcHHHHHHHH
Confidence 3678999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCccccchhHHhhhh
Q psy429 81 MKILTERGYSFTTTAEREIVL 101 (243)
Q Consensus 81 ~~ll~~~~~~~~~~~~~~~v~ 101 (243)
+++|.++++++.+..++++++
T Consensus 191 ~~lL~~~~~~~~~~~~~~~~~ 211 (376)
T PTZ00281 191 MKILTERGYSFTTTAEREIVR 211 (376)
T ss_pred HHHHHhcCCCCCcHHHHHHHH
Confidence 999999998887766766655
No 17
>KOG0676|consensus
Probab=99.88 E-value=4.4e-23 Score=181.21 Aligned_cols=109 Identities=69% Similarity=1.026 Sum_probs=99.0
Q ss_pred chHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCCceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHHH
Q psy429 2 VGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 81 (243)
Q Consensus 2 ~~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l~ 81 (243)
|.+.||||+|+|||.|++|++|++.++ ++ ||.|++||+|||+|++.|+++||+||+++++++.++++||+++|++|+
T Consensus 111 p~~nREk~tqi~FE~fnvpa~yva~qa-vl--ya~g~ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~ 187 (372)
T KOG0676|consen 111 PKANREKLTQIMFETFNVPALYVAIQA-VL--YASGRTTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLL 187 (372)
T ss_pred chHhHHHHHHHhhhhcCccHhHHHHHH-HH--HHcCCeeEEEEEcCCCceeeeecccccccchhhheecccchhhHHHHH
Confidence 468999999999999999999998877 77 999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccccchhHHhhhh------heeeeccCCCcc
Q psy429 82 KILTERGYSFTTTAEREIVL------AALVVDNGSGMC 113 (243)
Q Consensus 82 ~ll~~~~~~~~~~~~~~~v~------~~vViD~Gs~~~ 113 (243)
++|.++++++.+..++++++ |.+-+|+.-..-
T Consensus 188 ~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~ 225 (372)
T KOG0676|consen 188 KQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEE 225 (372)
T ss_pred HHHHhcccccccccHHHHHHHhHhhhcccccccchhhh
Confidence 99999999999999999987 455556654433
No 18
>PTZ00466 actin-like protein; Provisional
Probab=99.88 E-value=2.6e-22 Score=179.92 Aligned_cols=99 Identities=49% Similarity=0.856 Sum_probs=93.9
Q ss_pred chHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCCceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHHH
Q psy429 2 VGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 81 (243)
Q Consensus 2 ~~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l~ 81 (243)
|...||+++|++||+|++|++++.+++ +|++|++|++||+|||+|++.|+|+||+||+++.++++++++||+++|++|+
T Consensus 118 ~~~~re~~~e~lFE~~~~p~~~~~~~~-~lsl~a~g~~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~ 196 (380)
T PTZ00466 118 PQKNKEKIAEVFFETFNVPALFISIQA-ILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLG 196 (380)
T ss_pred cHHHHHHHHHHHhccCCCCeEEEecch-HHHHHhcCCceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHH
Confidence 678999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccccchhHHhhhh
Q psy429 82 KILTERGYSFTTTAEREIVL 101 (243)
Q Consensus 82 ~ll~~~~~~~~~~~~~~~v~ 101 (243)
++|.+++..+.+..+.++++
T Consensus 197 ~lL~~~~~~~~~~~~~~~v~ 216 (380)
T PTZ00466 197 YLLRKNGHLFNTSAEMEVVK 216 (380)
T ss_pred HHHHhcCCCCCcHHHHHHHH
Confidence 99999988777777777765
No 19
>KOG0677|consensus
Probab=99.87 E-value=4.6e-22 Score=164.15 Aligned_cols=125 Identities=48% Similarity=0.820 Sum_probs=109.3
Q ss_pred chHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCCceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHHH
Q psy429 2 VGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 81 (243)
Q Consensus 2 ~~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l~ 81 (243)
|-..||||.|++||+|++.++|+..++ +|++||.|..||+|||+|...|||+|||||+.++|-.+|++++|+++|+||-
T Consensus 113 P~kNREKm~evMFEkY~F~gvyvaiQA-VLtLYAQGL~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi 191 (389)
T KOG0677|consen 113 PTKNREKMIEVMFEKYGFGGVYVAIQA-VLTLYAQGLLTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLI 191 (389)
T ss_pred ccccHHHHHHHHHHHcCCCeEEehHHH-HHHHHHhcccceEEEecCCCeeEEeeeecceehhhhhhhccccchhHHHHHH
Confidence 457899999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccccchhHHhhhh------h----------------eeeecc----CCCccccCcCCCCCCCccc
Q psy429 82 KILTERGYSFTTTAEREIVL------A----------------ALVVDN----GSGMCKAGFAGDDAPRAVF 127 (243)
Q Consensus 82 ~ll~~~~~~~~~~~~~~~v~------~----------------~vViD~----Gs~~~K~G~ag~~~P~~i~ 127 (243)
+||..|++.++-+.+.|.++ | ++.... ....||+|-.--+.|.+.|
T Consensus 192 ~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~YtLPDGRvIkvG~ERFeAPE~LF 263 (389)
T KOG0677|consen 192 KLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESYTLPDGRVIKVGGERFEAPEALF 263 (389)
T ss_pred HHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeeeecCCCcEEEecceeccCchhhc
Confidence 99999999999888888876 2 222222 3567788755555676655
No 20
>KOG0680|consensus
Probab=99.87 E-value=2.3e-22 Score=169.91 Aligned_cols=132 Identities=27% Similarity=0.495 Sum_probs=119.1
Q ss_pred hheeeeccCCCccccCcCCCCCCCcccCcceeccCCCcccccCCCccccccchhhhccccccc--cCCCCCCcccCHHHH
Q psy429 101 LAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL--KYPIEHGIVTNWDDM 178 (243)
Q Consensus 101 ~~~vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l--~~p~~~G~i~d~d~~ 178 (243)
.++||+|||++++|+|+++++.|. ++|+++.+.|. +.++.++|++..++++...| ++|+++|+++|||..
T Consensus 3 ~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~-------~~rr~f~~nei~ec~D~ssL~y~rp~erGyLvnW~tq 74 (400)
T KOG0680|consen 3 TTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKF-------GRRRSFLANEIDECKDISSLFYRRPHERGYLVNWDTQ 74 (400)
T ss_pred CceEEEcCCceeEEeccCCCCCce-eccchhhhccc-------ccchhhhhhhhhhccCccceEEeehhhcceeEeehhH
Confidence 468999999999999999999999 88999998875 45678999999999887665 569999999999999
Q ss_pred HHHHHHHhhcc-ccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhcccc
Q psy429 179 EKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTI 240 (243)
Q Consensus 179 e~l~~~~~~~~-L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~ 240 (243)
.++|+|+|.+. .+++.+++.+++|||.++-++..+.+.|++||+|+|.+++-+..+.|+++-
T Consensus 75 ~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~ 137 (400)
T KOG0680|consen 75 SQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFT 137 (400)
T ss_pred HHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchh
Confidence 99999999632 457778999999999999999999999999999999999999999999875
No 21
>PTZ00004 actin-2; Provisional
Probab=99.87 E-value=9.3e-22 Score=176.41 Aligned_cols=100 Identities=77% Similarity=1.122 Sum_probs=93.9
Q ss_pred CchHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCCceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHH
Q psy429 1 MVGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 80 (243)
Q Consensus 1 ~~~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l 80 (243)
+|...|++++|++||.|++|++++.+++ +|++|++|++||+|||+|++.|+|+||+||+++.++++++++||++++++|
T Consensus 112 ~~~~~r~~~~e~lFE~~~~~~~~~~~~~-~ls~ya~g~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L 190 (378)
T PTZ00004 112 NPKANREKMTQIMFETHNVPAMYVAIQA-VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYM 190 (378)
T ss_pred CcHHHHHHHHHHHHhhcCCceEEeeccH-HHHHHhcCCceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHH
Confidence 3678999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCccccchhHHhhhh
Q psy429 81 MKILTERGYSFTTTAEREIVL 101 (243)
Q Consensus 81 ~~ll~~~~~~~~~~~~~~~v~ 101 (243)
+++|.++++.+....+.++++
T Consensus 191 ~~lL~~~~~~~~~~~~~~~~~ 211 (378)
T PTZ00004 191 MKILHERGTTFTTTAEKEIVR 211 (378)
T ss_pred HHHHHhcCCCCCcHHHHHHHH
Confidence 999999998877766666655
No 22
>KOG0679|consensus
Probab=99.86 E-value=1.3e-21 Score=168.82 Aligned_cols=91 Identities=30% Similarity=0.538 Sum_probs=87.6
Q ss_pred chHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCCceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHHH
Q psy429 2 VGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 81 (243)
Q Consensus 2 ~~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l~ 81 (243)
+.+.|||++|++||+|+||++|+++++ +|++||+|+.|+||||+|+..|+|+||+||+++.+++.+.++||+.|+.+++
T Consensus 118 ~~~~Rek~~ElmFE~~nvPAf~L~k~~-v~~AFA~GrstalVvDiGa~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~ 196 (426)
T KOG0679|consen 118 TRANREKLTELMFEKLNVPAFYLAKTA-VCTAFANGRSTALVVDIGATHTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCR 196 (426)
T ss_pred cHHHHHHHHHHHHhhcCCceEEEechH-HHHHHhcCCCceEEEEecCCCceeeeeecceEeeeeeEecccchHHHHHHHH
Confidence 468999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccccc
Q psy429 82 KILTERGYSFTT 93 (243)
Q Consensus 82 ~ll~~~~~~~~~ 93 (243)
++|...++++..
T Consensus 197 q~l~~~~iei~P 208 (426)
T KOG0679|consen 197 QLLEPKNIEIIP 208 (426)
T ss_pred HHHhhcCcccCc
Confidence 999999888654
No 23
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.84 E-value=1.1e-20 Score=171.36 Aligned_cols=99 Identities=41% Similarity=0.700 Sum_probs=91.5
Q ss_pred chHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhc----------CCceEEEEeCCCCceeEEEeecCeeccccceeecc
Q psy429 2 VGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYAS----------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 71 (243)
Q Consensus 2 ~~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~----------g~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~ 71 (243)
|...|++++|++||.|++|++++..++ +|++|++ |+++|+|||+|++.|+|+||+||+++.++++++++
T Consensus 114 ~~~~Re~l~e~lFE~~~~p~i~~~~~~-~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~ 192 (414)
T PTZ00280 114 PPENREYTAEIMFETFNVKGLYIAVQA-VLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPL 192 (414)
T ss_pred cHHHHHHHHHHHhhccCCCeEEEecCH-HHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCEEcccceEEecC
Confidence 567899999999999999999999999 9999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcCccccchhHHhhhh
Q psy429 72 AGRDLTDYLMKILTERGYSFTTTAEREIVL 101 (243)
Q Consensus 72 gG~~~~~~l~~ll~~~~~~~~~~~~~~~v~ 101 (243)
||+++|++|+++|.+++.++....+.++++
T Consensus 193 GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~ 222 (414)
T PTZ00280 193 AGRDITNFIQQMLRERGEPIPAEDILLLAQ 222 (414)
T ss_pred cHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence 999999999999999988776554555543
No 24
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.82 E-value=3.4e-20 Score=166.94 Aligned_cols=89 Identities=42% Similarity=0.752 Sum_probs=78.8
Q ss_pred CchHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCCceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHH
Q psy429 1 MVGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 80 (243)
Q Consensus 1 ~~~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l 80 (243)
++...|++++|++||+|++|++++.+++ +|++|++|+.||+|||+|++.|+|+||+||+++.++++++++||++++++|
T Consensus 105 ~~~~~r~~l~e~lfE~~~~~~v~~~~~~-~~a~~~~g~~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l 183 (393)
T PF00022_consen 105 NPRSQREKLAEILFEKFGVPSVYFIPSP-LLALYASGRTTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGGDDLTEYL 183 (393)
T ss_dssp --HHHHHHHHHHHHHTS--SEEEEEEHH-HHHHHHTTBSSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SHHHHHHHH
T ss_pred CCchhhhhhhhhhhcccccceeeeeecc-cccccccccccccccccceeeeeeeeeeeccccccccccccccHHHHHHHH
Confidence 4678999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcc
Q psy429 81 MKILTERGYS 90 (243)
Q Consensus 81 ~~ll~~~~~~ 90 (243)
+++|.++++.
T Consensus 184 ~~lL~~~~~~ 193 (393)
T PF00022_consen 184 KELLKERNIQ 193 (393)
T ss_dssp HHHHHHT-SS
T ss_pred HHHHHhhccc
Confidence 9999997444
No 25
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.79 E-value=6.6e-19 Score=157.65 Aligned_cols=99 Identities=66% Similarity=1.084 Sum_probs=90.9
Q ss_pred chHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCCceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHHH
Q psy429 2 VGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 81 (243)
Q Consensus 2 ~~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l~ 81 (243)
+...|++++|++||.|++|++++.+++ ++++|+.|.++|+|||+|++.|+|+||+||+++.++++++++||++++++|+
T Consensus 107 ~~~~r~~~~e~lfE~~~~~~v~~~~~~-~~a~~~~g~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~ 185 (373)
T smart00268 107 PKSNREKILEIMFETFNFPALYIAIQA-VLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLK 185 (373)
T ss_pred CHHHHHHHHHHhhccCCCCeEEEeccH-HHHHHhCCCCEEEEEecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHH
Confidence 578999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccccchhHHhhhh
Q psy429 82 KILTERGYSFTTTAEREIVL 101 (243)
Q Consensus 82 ~ll~~~~~~~~~~~~~~~v~ 101 (243)
++|.+++..+....+.++++
T Consensus 186 ~~l~~~~~~~~~~~~~~~~~ 205 (373)
T smart00268 186 ELLSERGYQFNSSAEFEIVR 205 (373)
T ss_pred HHHHhcCCCCCcHHHHHHHH
Confidence 99998766665555555554
No 26
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.78 E-value=5.1e-19 Score=160.35 Aligned_cols=99 Identities=52% Similarity=0.912 Sum_probs=92.0
Q ss_pred chHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCCc--eEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHH
Q psy429 2 VGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGRT--TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 79 (243)
Q Consensus 2 ~~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~~--~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~ 79 (243)
+...|++++|++||+|++|+++++.++ +|++|+.|+. +|+|||+|++.|+|+||+||.++.++++|+++||+++|.+
T Consensus 118 ~~~~re~~~e~~fE~~~vp~~~~~~~~-~l~~ya~g~~~~~g~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~ 196 (444)
T COG5277 118 PPSNREKITELLFETLNVPALYLAIQA-VLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDY 196 (444)
T ss_pred cHHHHHHHHHHHHHhcCCcceEeeHHH-HHHHHhcCCCCCceEEEEcCCCceeeEeeeccccccccceeeecCcHHHHHH
Confidence 457899999999999999999999999 9999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHhh-----cCccccch---hHHhhhh
Q psy429 80 LMKILTE-----RGYSFTTT---AEREIVL 101 (243)
Q Consensus 80 l~~ll~~-----~~~~~~~~---~~~~~v~ 101 (243)
|+++|.. +++.+... .+.++++
T Consensus 197 l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~ 226 (444)
T COG5277 197 LKKLLREKYPPSRGYNLKSELVEYSSEIVN 226 (444)
T ss_pred HHHHHhhcccccCCcccccccccccHHHHH
Confidence 9999999 77777665 5566665
No 27
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.77 E-value=1.5e-18 Score=155.20 Aligned_cols=98 Identities=68% Similarity=1.107 Sum_probs=89.6
Q ss_pred chHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCCceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHHH
Q psy429 2 VGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 81 (243)
Q Consensus 2 ~~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l~ 81 (243)
+...|++++|++||.+++|++++.+++ ++++|++|.++|+|||+|++.|+|+||+||+++.++.+++++||++++++|+
T Consensus 107 ~~~~r~~~~e~lfe~~~~~~v~~~~~~-~~a~~~~g~~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~ 185 (371)
T cd00012 107 PKSNREKTTEIMFETFNVPALYVAIQA-VLSLYASGRTTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLK 185 (371)
T ss_pred CHHHHHHHHHHhhccCCCCEEEEechH-HHHHHhcCCCeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHH
Confidence 457899999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccccchhHHhhh
Q psy429 82 KILTERGYSFTTTAEREIV 100 (243)
Q Consensus 82 ~ll~~~~~~~~~~~~~~~v 100 (243)
++|.++++.++...+.+.+
T Consensus 186 ~~l~~~~~~~~~~~~~~~~ 204 (371)
T cd00012 186 ELLRERGYELNSSDEREIV 204 (371)
T ss_pred HHHHhcCCCccchhHHHHH
Confidence 9999988765544444333
No 28
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.67 E-value=1.7e-16 Score=140.01 Aligned_cols=129 Identities=14% Similarity=0.171 Sum_probs=105.9
Q ss_pred eeeeccCCCccccCcCCCCCCCcccCcceeccCCCcccccCCCccccccchhhhc----cccccccCCCCCCcccCHHHH
Q psy429 103 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK----RGILTLKYPIEHGIVTNWDDM 178 (243)
Q Consensus 103 ~vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~l~~p~~~G~i~d~d~~ 178 (243)
.++||+||+++|+|+.+++ +....||+++..+.. .+..++|+++... .....+.+|+++|.|.|||.+
T Consensus 10 ~vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~-------~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~ 81 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKT-------GKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEAT 81 (335)
T ss_pred ceEEEcCCCcEEEEECCCC-EEEecCCEEEEECCC-------CeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHH
Confidence 4999999999999998775 466789999876431 2357899998654 345678899999999999999
Q ss_pred HHHHHHHhhccccCCC-CCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhcccc
Q psy429 179 EKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTI 240 (243)
Q Consensus 179 e~l~~~~~~~~L~~~~-~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~ 240 (243)
+.+|+|++.+.+...+ ..++++++.|...+...|+.+.+ +||.++++.+++.+++++|+|-
T Consensus 82 e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a 143 (335)
T PRK13930 82 EAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIG 143 (335)
T ss_pred HHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHh
Confidence 9999999954444323 47889999999999988887777 7999999999999999998863
No 29
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.66 E-value=1.1e-16 Score=141.38 Aligned_cols=130 Identities=16% Similarity=0.174 Sum_probs=106.3
Q ss_pred heeeeccCCCccccCcCCCCCCCcccCcceeccCCCcccccCCCccccccchhhhc----cccccccCCCCCCcccCHHH
Q psy429 102 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK----RGILTLKYPIEHGIVTNWDD 177 (243)
Q Consensus 102 ~~vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~l~~p~~~G~i~d~d~ 177 (243)
..++||+||.++|+|+++++. .+.+||+++.++.. .+..++|+++... .....+.+|+++|.|.|||.
T Consensus 6 ~~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~-------~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~ 77 (334)
T PRK13927 6 NDLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDT-------KKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDV 77 (334)
T ss_pred ceeEEEcCcceEEEEECCCcE-EEecCCEEEEECCC-------CeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHH
Confidence 359999999999999999877 56899999987542 1246899998654 35577889999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhcccc
Q psy429 178 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTI 240 (243)
Q Consensus 178 ~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~ 240 (243)
++.+|++++.+.++. +.++|.+++..|.+....++++++.+||.++++.+++.+++++|+|-
T Consensus 78 ~~~ll~~~~~~~~~~-~~~~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~ 139 (334)
T PRK13927 78 TEKMLKYFIKKVHKN-FRPSPRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIG 139 (334)
T ss_pred HHHHHHHHHHHHhhc-cCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHH
Confidence 999999999877766 66665444444466777777899999999999999999999998763
No 30
>KOG0678|consensus
Probab=99.60 E-value=2.6e-16 Score=133.76 Aligned_cols=118 Identities=37% Similarity=0.577 Sum_probs=98.4
Q ss_pred chHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcC--------CceEEEEeCCCCceeEEEeecCeeccccceeecchH
Q psy429 2 VGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASG--------RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 73 (243)
Q Consensus 2 ~~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g--------~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG 73 (243)
++..||.++|++||.|++|.+|++-++ ++|+-+.- ..||+|+|.|...|+++||.|||++-.+++.++++|
T Consensus 118 ~penreytaeImfEsfnvpglyiAVqa-vLALaaswts~~v~er~ltG~VidsGdgvThvipvaEgyVigScik~iPiag 196 (415)
T KOG0678|consen 118 QPENREYTAEIMFESFNVPGLYIAVQA-VLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAG 196 (415)
T ss_pred CchhhHHHHHhhhhhccCchHHHHHHH-HHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeecceEEeeeeccccccC
Confidence 457899999999999999999999999 99997664 359999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCccccchhHHhhhhheeeeccCCCccccCcCCCCCCCcccCcce
Q psy429 74 RDLTDYLMKILTERGYSFTTTAEREIVLAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 131 (243)
Q Consensus 74 ~~~~~~l~~ll~~~~~~~~~~~~~~~v~~~vViD~Gs~~~K~G~ag~~~P~~i~ps~v 131 (243)
+++|-.++.+|.+|+......+..+.. ..+|-+|+ .-.|.++.+.+.
T Consensus 197 rdiT~fiQ~llRer~~~iP~e~sl~ta----------k~iKe~yc-y~cPdivkef~k 243 (415)
T KOG0678|consen 197 RDITYFIQQLLREREVGIPPEQSLETA----------KAIKEKYC-YTCPDIVKEFAK 243 (415)
T ss_pred CchhHHHHHHhhCCCCCCChHHhhhhh----------HHHHhhhc-ccCcHHHHHHHH
Confidence 999999999999886654322222222 25677887 677887776653
No 31
>KOG0680|consensus
Probab=99.56 E-value=4.9e-15 Score=125.78 Aligned_cols=88 Identities=25% Similarity=0.447 Sum_probs=80.3
Q ss_pred hHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhc----C-------CceEEEEeCCCCceeEEEeecCeeccccceeecc
Q psy429 3 GTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYAS----G-------RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 71 (243)
Q Consensus 3 ~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~----g-------~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~ 71 (243)
++..+.+.|++||.|++.+++-...+ .|++|.. . ..+++|||+|++.|+|+|+++|.+..++++|+++
T Consensus 106 psi~~~t~eilFEey~fd~v~kttaa-~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~qaV~RiDv 184 (400)
T KOG0680|consen 106 PSIQEHTDEILFEEYQFDAVLKTTAA-VLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDV 184 (400)
T ss_pred cchhhhHHHHHHHHhccceEeecCHH-HhcchhhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhhceEEeec
Confidence 45678899999999999999999999 9998862 1 2389999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhcCccc
Q psy429 72 AGRDLTDYLMKILTERGYSF 91 (243)
Q Consensus 72 gG~~~~~~l~~ll~~~~~~~ 91 (243)
||+.||++|++.+++|+++.
T Consensus 185 GGK~LTn~LKE~iSyR~lNv 204 (400)
T KOG0680|consen 185 GGKALTNLLKETISYRHLNV 204 (400)
T ss_pred chHHHHHHHHHHhhhhhhcc
Confidence 99999999999999998874
No 32
>KOG0681|consensus
Probab=99.47 E-value=8.9e-14 Score=125.05 Aligned_cols=87 Identities=22% Similarity=0.526 Sum_probs=79.5
Q ss_pred chHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhc-C---CceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHH
Q psy429 2 VGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYAS-G---RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 77 (243)
Q Consensus 2 ~~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~-g---~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~ 77 (243)
|...|++|+|+|||.||+|++.+...+ +.|.|.+ + ..+|+||++||+.|+|+||.||..+...++|+++||.+..
T Consensus 128 P~~~R~~m~elLFE~YgvP~V~yGIDs-lfS~~hN~~~~~~~~~liis~g~~~T~vipvldG~~il~~~kRiN~GG~qa~ 206 (645)
T KOG0681|consen 128 PVYSRSEMVELLFETYGVPKVAYGIDS-LFSFYHNYGKSSNKSGLIISMGHSATHVIPVLDGRLILKDVKRINWGGYQAG 206 (645)
T ss_pred hHHHHHHHHHHHHHHcCCcceeechhh-HHHHhhccCcccCcceEEEecCCCcceeEEEecCchhhhcceeeccCcchHH
Confidence 557899999999999999999999999 9999954 2 2479999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCc
Q psy429 78 DYLMKILTERGY 89 (243)
Q Consensus 78 ~~l~~ll~~~~~ 89 (243)
.||.+||..+.+
T Consensus 207 dYL~~Lmq~Kyp 218 (645)
T KOG0681|consen 207 DYLSRLMQLKYP 218 (645)
T ss_pred HHHHHHHhccCc
Confidence 999999987643
No 33
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.40 E-value=7.5e-13 Score=117.05 Aligned_cols=128 Identities=12% Similarity=0.206 Sum_probs=103.0
Q ss_pred eeeeccCCCccccCcCCCCCCC-cccCcceeccCCCcccccCCCccccccchhhhcc----ccccccCCCCCCcccCHHH
Q psy429 103 ALVVDNGSGMCKAGFAGDDAPR-AVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR----GILTLKYPIEHGIVTNWDD 177 (243)
Q Consensus 103 ~vViD~Gs~~~K~G~ag~~~P~-~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~l~~p~~~G~i~d~d~ 177 (243)
.+=||+|+.++++ |.. ..+. ...||+++...+. ++-.++|+++.... +...+.+|+++|.|.|||.
T Consensus 6 ~~giDlGt~~~~i-~~~-~~~~~~~~ps~va~~~~~-------~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~ 76 (335)
T PRK13929 6 EIGIDLGTANILV-YSK-NKGIILNEPSVVAVDTET-------KAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDM 76 (335)
T ss_pred eEEEEcccccEEE-EEC-CCcEEecCCcEEEEECCC-------CeEEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHH
Confidence 4789999999997 332 2232 2358888765321 22468999986543 5566789999999999999
Q ss_pred HHHHHHHHhhc---cccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhcccc
Q psy429 178 MEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTI 240 (243)
Q Consensus 178 ~e~l~~~~~~~---~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~ 240 (243)
++.+|++++.+ .++..+++++++++.|+..+..+|+.+.+ +||.++++.+++.+++++|+|-
T Consensus 77 ~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~ 141 (335)
T PRK13929 77 TTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIG 141 (335)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHh
Confidence 99999999963 56666667899999999999999999999 9999999999999999999874
No 34
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.39 E-value=1.1e-12 Score=115.87 Aligned_cols=132 Identities=13% Similarity=0.115 Sum_probs=101.1
Q ss_pred eeeccCCCccccCcCCCCCCCcccCcceeccCCCcccccCCCccccccchhhhc----cccccccCCCCCCcccCHHHHH
Q psy429 104 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK----RGILTLKYPIEHGIVTNWDDME 179 (243)
Q Consensus 104 vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~l~~p~~~G~i~d~d~~e 179 (243)
+=||+|+.++++=..+. .-....||+++..++.. +..++.+.+|+++... .+...+.+|+++|.|.|||.++
T Consensus 5 ~giDlGt~~s~i~~~~~-~~~~~~psvv~~~~~~~---~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~ 80 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGR-GIVLNEPSVVAIRTDRD---AKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTE 80 (333)
T ss_pred eEEecCcceEEEEECCC-CEEEecCCEEEEecCCC---CCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHH
Confidence 67999999999844332 22345689888663311 1112347799998654 3567789999999999999999
Q ss_pred HHHHHHhhccccCCCCCC-ceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhcccc
Q psy429 180 KIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTI 240 (243)
Q Consensus 180 ~l~~~~~~~~L~~~~~~~-pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~ 240 (243)
.+|+|++.+.+......+ +++++.|+.++...|+. ++.+||.++++.+++.+++++|+|-
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~ 141 (333)
T TIGR00904 81 KMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIG 141 (333)
T ss_pred HHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHh
Confidence 999999976655322222 69999999999999987 6668999999999999999999874
No 35
>KOG0797|consensus
Probab=99.29 E-value=9.2e-12 Score=111.54 Aligned_cols=86 Identities=17% Similarity=0.394 Sum_probs=81.4
Q ss_pred HHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCCceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHHHHHH
Q psy429 5 TFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 84 (243)
Q Consensus 5 ~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l~~ll 84 (243)
+-|++..++|-+++|.++.+...+ ++++|++|..++||||+|...|+|+||-||..++++..++++||+++++.+.-+|
T Consensus 242 hveefl~ilL~eL~F~~~~v~QES-laatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll 320 (618)
T KOG0797|consen 242 HVEEFLTILLGELGFNSAVVHQES-LAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLL 320 (618)
T ss_pred HHHHHHHHHHHHhccceEEEEhhh-hHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHH
Confidence 568899999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccc
Q psy429 85 TERGYSF 91 (243)
Q Consensus 85 ~~~~~~~ 91 (243)
...++.+
T Consensus 321 ~rs~FPy 327 (618)
T KOG0797|consen 321 RRSGFPY 327 (618)
T ss_pred HhcCCCc
Confidence 8776654
No 36
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.08 E-value=4.8e-10 Score=98.97 Aligned_cols=81 Identities=15% Similarity=0.250 Sum_probs=71.2
Q ss_pred hHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC-----ceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHH
Q psy429 3 GTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 77 (243)
Q Consensus 3 ~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~-----~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~ 77 (243)
+..|+.+.+ +||.++++.+++++++ ++++|++|. ..++|||+|++.|+++|+.+|.++. ....++||+++|
T Consensus 113 ~~~r~~~~~-~~e~~g~~~~~lv~ep-~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~--~~~~~lGG~~id 188 (335)
T PRK13930 113 EVERRAVRE-AAEHAGAREVYLIEEP-MAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY--SESIRVAGDEMD 188 (335)
T ss_pred HHHHHHHHH-HHHHcCCCeEEecccH-HHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe--ecCcCchhHHHH
Confidence 445555555 8999999999999999 999999997 5689999999999999999998875 467899999999
Q ss_pred HHHHHHHhhc
Q psy429 78 DYLMKILTER 87 (243)
Q Consensus 78 ~~l~~ll~~~ 87 (243)
+.|.+++.++
T Consensus 189 ~~l~~~l~~~ 198 (335)
T PRK13930 189 EAIVQYVRRK 198 (335)
T ss_pred HHHHHHHHHH
Confidence 9999999765
No 37
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.05 E-value=5.3e-10 Score=98.93 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=95.3
Q ss_pred eeeccCCCccccCcCCCCCCCcccCcceeccCCCcccccCCCccccccchhhhc--c--ccccccCCCCCCcccCHHHHH
Q psy429 104 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK--R--GILTLKYPIEHGIVTNWDDME 179 (243)
Q Consensus 104 vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~--~--~~~~l~~p~~~G~i~d~d~~e 179 (243)
+=||+|+.++++-..+ +.-....||+++..+.. .+...+|+++... + ....+.+|+++|.|.|||.++
T Consensus 6 ~gIDlGt~~~~i~~~~-~~~v~~~psvv~~~~~~-------~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~ 77 (336)
T PRK13928 6 IGIDLGTANVLVYVKG-KGIVLNEPSVVAIDKNT-------NKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTE 77 (336)
T ss_pred eEEEcccccEEEEECC-CCEEEccCCEEEEECCC-------CeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHH
Confidence 7799999999995543 22233468888766431 1245789987543 2 455667899999999999999
Q ss_pred HHHHHHhhccccCC-CCCCc-eEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhcccc
Q psy429 180 KIWHHTFYNELRVA-PEEHP-VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTI 240 (243)
Q Consensus 180 ~l~~~~~~~~L~~~-~~~~p-vlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~ 240 (243)
.+|+|++. ++... +.++| ++++.|. .....+++..+.+||..+++.+++.+.+++|+|-
T Consensus 78 ~~l~~~~~-~~~~~~~~~~p~~vitvP~-~~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~ 138 (336)
T PRK13928 78 KMLKYFIN-KACGKRFFSKPRIMICIPT-GITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIG 138 (336)
T ss_pred HHHHHHHH-HHhccCCCCCCeEEEEeCC-CCCHHHHHHHHHHHHHcCCCceEecccHHHHHHH
Confidence 99999984 44333 45777 8888854 4556677888899999999999999999998873
No 38
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=98.91 E-value=5.1e-09 Score=92.49 Aligned_cols=81 Identities=15% Similarity=0.267 Sum_probs=71.6
Q ss_pred hHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC-----ceEEEEeCCCCceeEEEe-ecCeeccccceeecchHHHH
Q psy429 3 GTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR-----TTGIVLDSGDGVSHTVPI-YEGYALPHAILRLDLAGRDL 76 (243)
Q Consensus 3 ~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~-----~~~lVvd~G~~~t~v~pv-~~g~~~~~~~~~~~~gG~~~ 76 (243)
...++++++.+||.++++.+++++++ +++++++|. ..++|||+|++.|+++++ ++|....+. .++||+++
T Consensus 108 ~~~~r~~~~~a~~~ag~~~~~li~ep-~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~---~~lGG~~i 183 (334)
T PRK13927 108 TEVERRAVRESALGAGAREVYLIEEP-MAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKS---VRVGGDKF 183 (334)
T ss_pred CHHHHHHHHHHHHHcCCCeeccCCCh-HHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCC---cCChHHHH
Confidence 45688999999999999999999999 999999997 457999999999999999 788776654 47999999
Q ss_pred HHHHHHHHhhc
Q psy429 77 TDYLMKILTER 87 (243)
Q Consensus 77 ~~~l~~ll~~~ 87 (243)
|+.|.++|.++
T Consensus 184 d~~l~~~l~~~ 194 (334)
T PRK13927 184 DEAIINYVRRN 194 (334)
T ss_pred HHHHHHHHHHH
Confidence 99999998743
No 39
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=98.89 E-value=1.1e-08 Score=90.47 Aligned_cols=81 Identities=14% Similarity=0.298 Sum_probs=70.2
Q ss_pred chHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC-----ceEEEEeCCCCceeEEEe-ecCeeccccceeecchHHH
Q psy429 2 VGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR-----TTGIVLDSGDGVSHTVPI-YEGYALPHAILRLDLAGRD 75 (243)
Q Consensus 2 ~~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~-----~~~lVvd~G~~~t~v~pv-~~g~~~~~~~~~~~~gG~~ 75 (243)
++.+|+. ++.+||.++++.+++++++ ++++|++|. .+++|||+|++.|+++++ ++|....+. .++||++
T Consensus 110 ~~~~r~~-~~~~~~~ag~~~~~li~ep-~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~---~~lGG~d 184 (333)
T TIGR00904 110 TPVERRA-VKESALSAGAREVYLIEEP-MAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRS---IRVGGDE 184 (333)
T ss_pred CHHHHHH-HHHHHHHcCCCeEEEecCH-HHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEecCC---ccchHHH
Confidence 3456666 6778999999999999999 999999997 689999999999999999 887776654 4799999
Q ss_pred HHHHHHHHHhhc
Q psy429 76 LTDYLMKILTER 87 (243)
Q Consensus 76 ~~~~l~~ll~~~ 87 (243)
+|+.|.+++..+
T Consensus 185 id~~l~~~l~~~ 196 (333)
T TIGR00904 185 FDEAIINYIRRT 196 (333)
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 40
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=98.85 E-value=1.5e-08 Score=89.66 Aligned_cols=80 Identities=11% Similarity=0.252 Sum_probs=70.4
Q ss_pred chHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcC-----CceEEEEeCCCCceeEEEe-ecCeeccccceeecchHHH
Q psy429 2 VGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASG-----RTTGIVLDSGDGVSHTVPI-YEGYALPHAILRLDLAGRD 75 (243)
Q Consensus 2 ~~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g-----~~~~lVvd~G~~~t~v~pv-~~g~~~~~~~~~~~~gG~~ 75 (243)
++.+|+++.+ .||..+++.++++.++ +++++++| ..+++|||+|++.|+++++ ++|.... ...++||++
T Consensus 110 ~~~~R~~l~~-a~~~ag~~~~~li~ep-~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~---~~~~~GG~~ 184 (335)
T PRK13929 110 TAVERRAISD-AVKNCGAKNVHLIEEP-VAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSC---HSIRIGGDQ 184 (335)
T ss_pred CHHHHHHHHH-HHHHcCCCeeEeecCH-HHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEe---cCcCCHHHH
Confidence 5678999999 9999999999999999 99999998 4689999999999999999 5555433 346899999
Q ss_pred HHHHHHHHHhh
Q psy429 76 LTDYLMKILTE 86 (243)
Q Consensus 76 ~~~~l~~ll~~ 86 (243)
+|+.|.+.|.+
T Consensus 185 id~~l~~~l~~ 195 (335)
T PRK13929 185 LDEDIVSFVRK 195 (335)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 41
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=98.72 E-value=5.4e-08 Score=86.15 Aligned_cols=81 Identities=15% Similarity=0.281 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC-----ceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHH
Q psy429 3 GTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 77 (243)
Q Consensus 3 ~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~-----~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~ 77 (243)
...+++.++..||..+++.+.+++++ +++++++|. ..++|+|+|++.|+++++..|..+.. ...++||+++|
T Consensus 107 ~~~~r~~~~~a~~~ag~~~~~li~ep-~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~--~~~~lGG~did 183 (336)
T PRK13928 107 TSVEKRAVREAAEQAGAKKVYLIEEP-LAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTS--SSIKVAGDKFD 183 (336)
T ss_pred CHHHHHHHHHHHHHcCCCceEecccH-HHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEe--CCcCCHHHHHH
Confidence 35688899999999999999999999 999999996 67999999999999999999977654 46899999999
Q ss_pred HHHHHHHhh
Q psy429 78 DYLMKILTE 86 (243)
Q Consensus 78 ~~l~~ll~~ 86 (243)
+.|.+.+..
T Consensus 184 ~~i~~~l~~ 192 (336)
T PRK13928 184 EAIIRYIRK 192 (336)
T ss_pred HHHHHHHHH
Confidence 999999874
No 42
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=98.67 E-value=3.2e-08 Score=86.86 Aligned_cols=128 Identities=14% Similarity=0.215 Sum_probs=91.5
Q ss_pred eeeeccCCCccccCcCCCCCCCcccCcceeccCCCcccccCCCccccccchhhh----ccccccccCCCCCCcccCHHHH
Q psy429 103 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS----KRGILTLKYPIEHGIVTNWDDM 178 (243)
Q Consensus 103 ~vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~l~~p~~~G~i~d~d~~ 178 (243)
-+=||+|+.++++ |..+..=-...||+++..+.. .+-..+|+++.. ..+...+.+|+++|+|.|++..
T Consensus 3 ~igIDLGT~~t~i-~~~~~Giv~~epSvVA~~~~~-------~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~~ 74 (326)
T PF06723_consen 3 DIGIDLGTSNTRI-YVKGKGIVLNEPSVVAYDKDT-------GKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEAA 74 (326)
T ss_dssp EEEEEE-SSEEEE-EETTTEEEEEEES-EEEETTT---------EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHHH
T ss_pred ceEEecCcccEEE-EECCCCEEEecCcEEEEECCC-------CeEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHHH
Confidence 4679999999999 333222233458999877542 234568988844 2356788999999999999999
Q ss_pred HHHHHHHhhccccC-CCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhccc
Q psy429 179 EKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCT 239 (243)
Q Consensus 179 e~l~~~~~~~~L~~-~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y 239 (243)
+.++.|.+.+..+. ......++++-|.-.+...|+.+.+.+- ..++..+++.+.++++++
T Consensus 75 ~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~-~aGa~~V~li~ep~AaAi 135 (326)
T PF06723_consen 75 EEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAAR-QAGARKVYLIEEPIAAAI 135 (326)
T ss_dssp HHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHH-HTT-SEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecchHHHHh
Confidence 99999999766654 3356779999999999999999999885 589999999999998875
No 43
>KOG0797|consensus
Probab=98.44 E-value=7.6e-07 Score=80.47 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=70.3
Q ss_pred cccccCCCCCCcccC----------HHHHHHHHHHHhhccccCCC---CCCceEeecCCCCChhHHHHHHHHhhhcCCCC
Q psy429 160 ILTLKYPIEHGIVTN----------WDDMEKIWHHTFYNELRVAP---EEHPVLLTEAPLNPKANREKMTQIMFETFNTP 226 (243)
Q Consensus 160 ~~~l~~p~~~G~i~d----------~d~~e~l~~~~~~~~L~~~~---~~~pvlltep~~~~~~~re~~~eilFE~~~vp 226 (243)
.+.+++|+++|...- ..+++++|+|++.+.|++.+ ..+.++++.|-..-+..-+++..++|-+++|.
T Consensus 178 ~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~ 257 (618)
T KOG0797|consen 178 PYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFN 257 (618)
T ss_pred cceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccc
Confidence 466889999996633 35789999999999999987 46889999999888888899999999999999
Q ss_pred eEEeeehhhhcccc
Q psy429 227 AMYVAIQAVNCCTI 240 (243)
Q Consensus 227 av~~~~~~~ls~y~ 240 (243)
++.+...+++|+|=
T Consensus 258 ~~~v~QESlaatfG 271 (618)
T KOG0797|consen 258 SAVVHQESLAATFG 271 (618)
T ss_pred eEEEEhhhhHHHhc
Confidence 99999999999984
No 44
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=97.91 E-value=8.3e-05 Score=65.48 Aligned_cols=83 Identities=12% Similarity=0.286 Sum_probs=66.5
Q ss_pred chHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC-----ceEEEEeCCCCceeEEEeecCeeccccceeecchHHHH
Q psy429 2 VGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 76 (243)
Q Consensus 2 ~~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~-----~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~ 76 (243)
++..|+.+.+.+ ...++..++++++| ++++++.|. ...+|||+|...|.+.-+-.|..+.+ +.+++||+++
T Consensus 105 T~verrA~~~a~-~~aGa~~V~li~ep-~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~s--~si~~gG~~~ 180 (326)
T PF06723_consen 105 TEVERRALIDAA-RQAGARKVYLIEEP-IAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVAS--RSIRIGGDDI 180 (326)
T ss_dssp -HHHHHHHHHHH-HHTT-SEEEEEEHH-HHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEEE--EEES-SHHHH
T ss_pred CHHHHHHHHHHH-HHcCCCEEEEecch-HHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEEE--EEEEecCcch
Confidence 456788888877 56899999999999 999999994 35699999999999999988887654 7789999999
Q ss_pred HHHHHHHHhhcC
Q psy429 77 TDYLMKILTERG 88 (243)
Q Consensus 77 ~~~l~~ll~~~~ 88 (243)
++.+.+.+.++.
T Consensus 181 DeaI~~~ir~~y 192 (326)
T PF06723_consen 181 DEAIIRYIREKY 192 (326)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHhh
Confidence 999999998763
No 45
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=97.47 E-value=0.00062 Score=59.07 Aligned_cols=129 Identities=12% Similarity=0.154 Sum_probs=90.9
Q ss_pred eeeeccCCCccccCcCCCCCCCcccCcceeccCCCcccccCCCccccccchhhhc----cccccccCCCCCCcccCHHHH
Q psy429 103 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK----RGILTLKYPIEHGIVTNWDDM 178 (243)
Q Consensus 103 ~vViD~Gs~~~K~G~ag~~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~l~~p~~~G~i~d~d~~ 178 (243)
.+=||+|+.++++=.-+ ..--..-||+|+..++. ..+.-..+|+|+... ..+....+|+++|+|.|+|..
T Consensus 8 diGIDLGTanTlV~~k~-kgIVl~ePSVVAi~~~~-----~~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~~t 81 (342)
T COG1077 8 DIGIDLGTANTLVYVKG-KGIVLNEPSVVAIESEG-----KTKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFEVT 81 (342)
T ss_pred cceeeecccceEEEEcC-ceEEecCceEEEEeecC-----CCceEEEehHHHHHHhccCCCCceEEeecCCcEeecHHHH
Confidence 57799999999983222 22222348888876541 123457789988442 245566799999999999999
Q ss_pred HHHHHHHhhccccCC--CCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhcc
Q psy429 179 EKIWHHTFYNELRVA--PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCC 238 (243)
Q Consensus 179 e~l~~~~~~~~L~~~--~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~ 238 (243)
|.++.|.+.+..+-. ...-.++++-|.-.+.-.|+.+-|-+- .=+...+++.+.+..++
T Consensus 82 e~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~-~aGa~~V~lieEp~aAA 142 (342)
T COG1077 82 ELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAE-SAGAREVYLIEEPMAAA 142 (342)
T ss_pred HHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHH-hccCceEEEeccHHHHH
Confidence 999999886443222 234458888898899888888877664 46677888888877664
No 46
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=97.17 E-value=0.0021 Score=54.22 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=63.7
Q ss_pred hHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCCceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHHHH
Q psy429 3 GTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 82 (243)
Q Consensus 3 ~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l~~ 82 (243)
+.+|+.+. -.++.-++.-..+..++ .+++.+.+....+|+|+|+..|.+.=+.+|.++. .+..++||+++|+.+.+
T Consensus 74 ~~~r~a~~-~a~~~aGl~~~~li~ep-~Aaa~~~~~~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~ 149 (239)
T TIGR02529 74 EGDPKVIV-NVIESAGIEVLHVLDEP-TAAAAVLQIKNGAVVDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAG 149 (239)
T ss_pred cccHHHHH-HHHHHcCCceEEEeehH-HHHHHHhcCCCcEEEEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHH
Confidence 34455444 45667799999999999 9999988877789999999999998888887665 46778999999998876
Q ss_pred HHh
Q psy429 83 ILT 85 (243)
Q Consensus 83 ll~ 85 (243)
.+.
T Consensus 150 ~~~ 152 (239)
T TIGR02529 150 AYG 152 (239)
T ss_pred HhC
Confidence 553
No 47
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=96.94 E-value=0.0049 Score=52.86 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=62.9
Q ss_pred HHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCCceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHHHHHH
Q psy429 5 TFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 84 (243)
Q Consensus 5 ~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l~~ll 84 (243)
.|..+. -+.+.-++.-..+..++ .++..+.+...++|||+|.+.|.+.=+.+|.+... ...++||+++|+.+.+.+
T Consensus 103 ~~~~~~-~~~~~aGl~~~~ii~e~-~A~a~~~~~~~~~vvDIGggtt~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l 178 (267)
T PRK15080 103 DPRAII-NVVESAGLEVTHVLDEP-TAAAAVLGIDNGAVVDIGGGTTGISILKDGKVVYS--ADEPTGGTHMSLVLAGAY 178 (267)
T ss_pred hHHHHH-HHHHHcCCceEEEechH-HHHHHHhCCCCcEEEEeCCCcEEEEEEECCeEEEE--ecccCchHHHHHHHHHHh
Confidence 344444 67788899988899999 88888887777899999999999888888877654 577999999999988765
Q ss_pred h
Q psy429 85 T 85 (243)
Q Consensus 85 ~ 85 (243)
.
T Consensus 179 ~ 179 (267)
T PRK15080 179 G 179 (267)
T ss_pred C
Confidence 3
No 48
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=96.75 E-value=0.0052 Score=55.14 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=57.9
Q ss_pred hhhhcCCCeEEEecchhHHHHhhcCC-----ceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHHHHHH
Q psy429 13 MFETFNTPAMYVAIQAAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 84 (243)
Q Consensus 13 ~FE~~~~~~~~~~~~~~~~~~~~~g~-----~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l~~ll 84 (243)
+++..+..-..+..++ .+++++... ...+|||+|+..|+++.+.+|.+.. .+.+++||+++|+.+.+.|
T Consensus 166 ~~~~aGl~~~~i~~~~-~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it~~i~~~l 239 (371)
T TIGR01174 166 CVERCGLEVDNIVLSG-LASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHITKDIAKAL 239 (371)
T ss_pred HHHHcCCCeeeEEEhh-hhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHHHHHHHHh
Confidence 6678888888889999 888887642 3579999999999999999998654 5778999999999987654
No 49
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=96.65 E-value=0.0059 Score=53.74 Aligned_cols=86 Identities=10% Similarity=0.033 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhhh--------cCCCeEEEecchhHHHHhhc---------CCceEEEEeCCCCceeEEEeecCeeccccc
Q psy429 4 TTFQGVVRIMFET--------FNTPAMYVAIQAAVLSLYAS---------GRTTGIVLDSGDGVSHTVPIYEGYALPHAI 66 (243)
Q Consensus 4 ~~r~~~~e~~FE~--------~~~~~~~~~~~~~~~~~~~~---------g~~~~lVvd~G~~~t~v~pv~~g~~~~~~~ 66 (243)
.+|+.+.+.+-.. ..+..+...+++ +.+++.. ...+.+|||+|+..|.++-+-++.+....+
T Consensus 116 ~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~-~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s 194 (320)
T TIGR03739 116 TYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQP-QGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRS 194 (320)
T ss_pred HHHHHHHHHhccceecCCceEEEEEEEEEeCCC-hHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeehccCCEEccccc
Confidence 3566776665433 577889999999 8777654 235679999999999998888888888888
Q ss_pred eeecchHHHHHHHHHHHHhhc-Ccc
Q psy429 67 LRLDLAGRDLTDYLMKILTER-GYS 90 (243)
Q Consensus 67 ~~~~~gG~~~~~~l~~ll~~~-~~~ 90 (243)
...+.|-..+.+.+.+.+.++ +.+
T Consensus 195 ~s~~~G~~~~~~~I~~~i~~~~g~~ 219 (320)
T TIGR03739 195 GSVNGGMSDIYRLLAAEISKDIGTP 219 (320)
T ss_pred CCchhHHHHHHHHHHHHHHhhcCCC
Confidence 889999999999999999865 544
No 50
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=96.41 E-value=0.018 Score=52.66 Aligned_cols=75 Identities=17% Similarity=0.124 Sum_probs=61.6
Q ss_pred HHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC-----ceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHH
Q psy429 6 FQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 80 (243)
Q Consensus 6 r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~-----~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l 80 (243)
.+.+.+ ++|.-+..-..+..++ ++++++... ...+|||+|+..|++.=+.+|.+. ....+++||+++|+.+
T Consensus 168 ~~~~~~-a~~~aGl~v~~iv~ep-~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~it~dI 243 (420)
T PRK09472 168 AKNIVK-AVERCGLKVDQLIFAG-LASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNVVTSDI 243 (420)
T ss_pred HHHHHH-HHHHcCCeEeeEEehh-hHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHHHHHHHH
Confidence 344444 6788898888999999 999888753 358899999999999999999776 4578899999999999
Q ss_pred HHHH
Q psy429 81 MKIL 84 (243)
Q Consensus 81 ~~ll 84 (243)
.+.|
T Consensus 244 a~~l 247 (420)
T PRK09472 244 AYAF 247 (420)
T ss_pred HHHh
Confidence 7665
No 51
>CHL00094 dnaK heat shock protein 70
Probab=95.83 E-value=0.059 Score=51.81 Aligned_cols=83 Identities=16% Similarity=0.117 Sum_probs=62.1
Q ss_pred chHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC-----ceEEEEeCCCCceeEEEeecCee---ccccceeecchH
Q psy429 2 VGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYA---LPHAILRLDLAG 73 (243)
Q Consensus 2 ~~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~-----~~~lVvd~G~~~t~v~pv~~g~~---~~~~~~~~~~gG 73 (243)
.+.+|+.+.+. .+.-|+.-+.+++.| .+|++++|. ...+|+|+|.+.+.++-+--+.. +.....-..+||
T Consensus 147 ~~~qR~a~~~A-a~~AGl~v~~li~Ep-tAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG 224 (621)
T CHL00094 147 NDSQRQATKDA-GKIAGLEVLRIINEP-TAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGG 224 (621)
T ss_pred CHHHHHHHHHH-HHHcCCceEEEeccH-HHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcCh
Confidence 35567666555 467799999999999 999998874 47899999999999976643321 122234568999
Q ss_pred HHHHHHHHHHHhh
Q psy429 74 RDLTDYLMKILTE 86 (243)
Q Consensus 74 ~~~~~~l~~ll~~ 86 (243)
+++++.|.+.+.+
T Consensus 225 ~d~D~~l~~~~~~ 237 (621)
T CHL00094 225 DDFDKKIVNWLIK 237 (621)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887754
No 52
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=95.62 E-value=0.06 Score=51.43 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC------ceEEEEeCCCCceeEEEee--cCee-ccccceeecchH
Q psy429 3 GTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAG 73 (243)
Q Consensus 3 ~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~------~~~lVvd~G~~~t~v~pv~--~g~~-~~~~~~~~~~gG 73 (243)
+.+|+.+.+ ..+.-|++-+.+++.| .+|++++|. .+-+|+|+|++.+.++-+- +|.. +........+||
T Consensus 143 ~~qR~a~~~-Aa~~AGl~v~~li~Ep-tAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG 220 (595)
T TIGR02350 143 DAQRQATKD-AGKIAGLEVLRIINEP-TAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGG 220 (595)
T ss_pred HHHHHHHHH-HHHHcCCceEEEecch-HHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCc
Confidence 556666655 4667788999999999 998888763 4689999999999887552 3321 122233457999
Q ss_pred HHHHHHHHHHHhh
Q psy429 74 RDLTDYLMKILTE 86 (243)
Q Consensus 74 ~~~~~~l~~ll~~ 86 (243)
+++++.|.+.+..
T Consensus 221 ~d~D~~l~~~~~~ 233 (595)
T TIGR02350 221 DDFDQRIIDWLAD 233 (595)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999877653
No 53
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=95.54 E-value=0.086 Score=50.47 Aligned_cols=83 Identities=16% Similarity=0.075 Sum_probs=62.1
Q ss_pred hHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC-----ceEEEEeCCCCceeEEEee--cCee-ccccceeecchHH
Q psy429 3 GTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGR 74 (243)
Q Consensus 3 ~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~-----~~~lVvd~G~~~t~v~pv~--~g~~-~~~~~~~~~~gG~ 74 (243)
+.+|+.+.+. .+.-|+.-+.+++.| .+|++++|. .+-+|+|+|.+.+.++-+- +|.. +.....-..+||+
T Consensus 142 ~~qR~a~~~A-a~~AGl~v~~li~EP-tAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~ 219 (599)
T TIGR01991 142 DAQRQATKDA-ARLAGLNVLRLLNEP-TAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGD 219 (599)
T ss_pred HHHHHHHHHH-HHHcCCCceEEecCH-HHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHH
Confidence 5566665554 688899999999999 999988763 4689999999999987542 3322 1122334589999
Q ss_pred HHHHHHHHHHhhc
Q psy429 75 DLTDYLMKILTER 87 (243)
Q Consensus 75 ~~~~~l~~ll~~~ 87 (243)
++++.|.+.+.++
T Consensus 220 d~D~~l~~~l~~~ 232 (599)
T TIGR01991 220 DFDHALAKWILKQ 232 (599)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
No 54
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=95.51 E-value=0.046 Score=48.66 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=59.4
Q ss_pred cCCCeEEEecchhHHHHhhcCC-------------ceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHHHHH
Q psy429 17 FNTPAMYVAIQAAVLSLYASGR-------------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 83 (243)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~g~-------------~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l~~l 83 (243)
.++..+.+.+++ +.+++.... ...+|||+|+..|.++-+.++.+....+..++.|...+-+.+.+.
T Consensus 151 I~i~~V~V~pQ~-~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~ 229 (344)
T PRK13917 151 INVKGVKVVAQP-MGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASH 229 (344)
T ss_pred EEEEEEEEeccc-HHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHH
Confidence 456778899999 888875432 246999999999999999999999888888999999999999999
Q ss_pred HhhcC
Q psy429 84 LTERG 88 (243)
Q Consensus 84 l~~~~ 88 (243)
+..+.
T Consensus 230 i~~~~ 234 (344)
T PRK13917 230 ISKKE 234 (344)
T ss_pred HHhhC
Confidence 96543
No 55
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=95.47 E-value=0.081 Score=50.90 Aligned_cols=83 Identities=14% Similarity=0.094 Sum_probs=60.6
Q ss_pred chHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC-----ceEEEEeCCCCceeEEEeec--Cee-ccccceeecchH
Q psy429 2 VGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYE--GYA-LPHAILRLDLAG 73 (243)
Q Consensus 2 ~~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~-----~~~lVvd~G~~~t~v~pv~~--g~~-~~~~~~~~~~gG 73 (243)
.+.+|+.+. -..+.-|+.-+.+++.| .+|++++|. .+.+|+|+|.+.+.++-+-- |.. +........+||
T Consensus 145 ~~~qR~a~~-~Aa~~AGl~v~~li~Ep-tAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG 222 (627)
T PRK00290 145 NDAQRQATK-DAGKIAGLEVLRIINEP-TAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGG 222 (627)
T ss_pred CHHHHHHHH-HHHHHcCCceEEEecch-HHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcCh
Confidence 355666664 44567789999999999 999888863 57999999999999875532 211 222233468999
Q ss_pred HHHHHHHHHHHhh
Q psy429 74 RDLTDYLMKILTE 86 (243)
Q Consensus 74 ~~~~~~l~~ll~~ 86 (243)
+++++.|.+.+.+
T Consensus 223 ~d~D~~l~~~~~~ 235 (627)
T PRK00290 223 DDFDQRIIDYLAD 235 (627)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887754
No 56
>PRK13410 molecular chaperone DnaK; Provisional
Probab=95.41 E-value=0.1 Score=50.66 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=60.8
Q ss_pred chHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC-----ceEEEEeCCCCceeEEEee--cCee-ccccceeecchH
Q psy429 2 VGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAG 73 (243)
Q Consensus 2 ~~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~-----~~~lVvd~G~~~t~v~pv~--~g~~-~~~~~~~~~~gG 73 (243)
.+.+|+.+-+. .+.-|+.-+.+++.| .+|++++|. .+-+|+|+|++.+.++-+- +|.. +.....-..+||
T Consensus 147 ~~~qR~a~~~A-a~~AGl~v~~li~EP-tAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG 224 (668)
T PRK13410 147 NDSQRQATRDA-GRIAGLEVERILNEP-TAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGG 224 (668)
T ss_pred CHHHHHHHHHH-HHHcCCCeEEEecch-HHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCCh
Confidence 35667665444 477899999999999 999998874 4789999999999887543 3321 222233457999
Q ss_pred HHHHHHHHHHHhh
Q psy429 74 RDLTDYLMKILTE 86 (243)
Q Consensus 74 ~~~~~~l~~ll~~ 86 (243)
+++++.|.+.+..
T Consensus 225 ~dfD~~l~~~l~~ 237 (668)
T PRK13410 225 NDFDKRIVDWLAE 237 (668)
T ss_pred hHHHHHHHHHHHH
Confidence 9999988877654
No 57
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=95.40 E-value=0.1 Score=46.16 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhhcCCCeEEEecchhHHH--Hhh-----c---C-Cc-eEEEEeCCCCceeEEEeecCeeccccceeecch
Q psy429 5 TFQGVVRIMFETFNTPAMYVAIQAAVLS--LYA-----S---G-RT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 72 (243)
Q Consensus 5 ~r~~~~e~~FE~~~~~~~~~~~~~~~~~--~~~-----~---g-~~-~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~g 72 (243)
..+.+.++ |++.++.-..+..++ .+. ++. . . .. +.++||+|+..|+++-+.+|.++.. +.+++|
T Consensus 144 ~v~~~~~~-~~~aGl~~~~id~~~-~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~~--r~i~~G 219 (348)
T TIGR01175 144 VVDSRLHA-LKLAGLEPKVVDVES-FALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLFT--REVPFG 219 (348)
T ss_pred HHHHHHHH-HHHcCCceEEEecHH-HHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEEE--EEeech
Confidence 34444444 677777666665555 443 332 1 1 22 4899999999999999999988764 889999
Q ss_pred HHHHHHHHHHHH
Q psy429 73 GRDLTDYLMKIL 84 (243)
Q Consensus 73 G~~~~~~l~~ll 84 (243)
|+++++.+.+.+
T Consensus 220 ~~~i~~~i~~~~ 231 (348)
T TIGR01175 220 TRQLTSELSRAY 231 (348)
T ss_pred HHHHHHHHHHHc
Confidence 999999887654
No 58
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=95.40 E-value=0.1 Score=50.09 Aligned_cols=83 Identities=16% Similarity=0.088 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC-----ceEEEEeCCCCceeEEEee--cCee-ccccceeecchHH
Q psy429 3 GTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGR 74 (243)
Q Consensus 3 ~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~-----~~~lVvd~G~~~t~v~pv~--~g~~-~~~~~~~~~~gG~ 74 (243)
+.+|+.+ .-..+.-|++-+.+++.| .+|++++|. .+-+|+|+|.+.++++-+- .|.. +.....-..+||.
T Consensus 162 ~~qR~a~-~~Aa~~AGl~v~~li~EP-tAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~ 239 (616)
T PRK05183 162 DAQRQAT-KDAARLAGLNVLRLLNEP-TAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGD 239 (616)
T ss_pred HHHHHHH-HHHHHHcCCCeEEEecch-HHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHH
Confidence 4566665 445788899999999999 999988763 4679999999999987553 3321 1222334679999
Q ss_pred HHHHHHHHHHhhc
Q psy429 75 DLTDYLMKILTER 87 (243)
Q Consensus 75 ~~~~~l~~ll~~~ 87 (243)
++++.|.+.+.++
T Consensus 240 d~D~~l~~~~~~~ 252 (616)
T PRK05183 240 DFDHLLADWILEQ 252 (616)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 59
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=95.24 E-value=0.043 Score=46.30 Aligned_cols=73 Identities=12% Similarity=0.100 Sum_probs=55.9
Q ss_pred cCCCCCCcccCHHHHHHHHHHHhhc---cccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhccc
Q psy429 164 KYPIEHGIVTNWDDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCT 239 (243)
Q Consensus 164 ~~p~~~G~i~d~d~~e~l~~~~~~~---~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y 239 (243)
..|+.+|.|.|+|..+.+++++... .++ ..-..++++-|......+|+.+.+. .+.-++.-+.+...+..++.
T Consensus 28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g--~~~~~vvisVP~~~~~~~r~a~~~a-~~~aGl~~~~li~ep~Aaa~ 103 (239)
T TIGR02529 28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLG--IELTHAATAIPPGTIEGDPKVIVNV-IESAGIEVLHVLDEPTAAAA 103 (239)
T ss_pred cccccCCeEEEhHHHHHHHHHHHHHHHHHhC--CCcCcEEEEECCCCCcccHHHHHHH-HHHcCCceEEEeehHHHHHH
Confidence 3689999999999999999999842 233 2346889999988888888766644 45568888888888876553
No 60
>PLN03184 chloroplast Hsp70; Provisional
Probab=95.20 E-value=0.13 Score=50.01 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC-----ceEEEEeCCCCceeEEEee--cCee-ccccceeecchHH
Q psy429 3 GTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGR 74 (243)
Q Consensus 3 ~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~-----~~~lVvd~G~~~t~v~pv~--~g~~-~~~~~~~~~~gG~ 74 (243)
+.+|+.+.+ ..+.-++.-+.+++.| .+|++++|. ..-+|+|+|...+.++-+- +|.. +.....-..+||+
T Consensus 185 ~~qR~a~~~-Aa~~AGl~v~~li~EP-tAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~ 262 (673)
T PLN03184 185 DSQRTATKD-AGRIAGLEVLRIINEP-TAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGD 262 (673)
T ss_pred HHHHHHHHH-HHHHCCCCeEEEeCcH-HHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHH
Confidence 456666544 5577899999999999 999988874 4789999999999987553 2221 1222334689999
Q ss_pred HHHHHHHHHHhh
Q psy429 75 DLTDYLMKILTE 86 (243)
Q Consensus 75 ~~~~~l~~ll~~ 86 (243)
++++.|.+.+..
T Consensus 263 dfD~~L~~~~~~ 274 (673)
T PLN03184 263 DFDKRIVDWLAS 274 (673)
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
No 61
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=95.16 E-value=0.065 Score=48.84 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=58.6
Q ss_pred HHHhhhhcCCCeEEEecchhHHHHhhcC-----CceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHHHHHH
Q psy429 10 VRIMFETFNTPAMYVAIQAAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL 84 (243)
Q Consensus 10 ~e~~FE~~~~~~~~~~~~~~~~~~~~~g-----~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l~~ll 84 (243)
.+-++|+-+..--.++-++ +++..+.= ...+++||+|+..|++.-..+|.+... ..+|+||+++|+-+.+.|
T Consensus 170 l~k~v~r~gl~v~~i~l~p-lAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~--~~ipvgG~~vT~DIa~~l 246 (418)
T COG0849 170 LEKCVERAGLKVDNIVLEP-LASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYT--GVIPVGGDHVTKDIAKGL 246 (418)
T ss_pred HHHHHHHhCCCeeeEEEeh-hhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEE--eeEeeCccHHHHHHHHHh
Confidence 3456777777777777777 77766553 358999999999999999999988765 678999999999998777
Q ss_pred h
Q psy429 85 T 85 (243)
Q Consensus 85 ~ 85 (243)
.
T Consensus 247 ~ 247 (418)
T COG0849 247 K 247 (418)
T ss_pred C
Confidence 5
No 62
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=95.10 E-value=0.15 Score=49.46 Aligned_cols=82 Identities=16% Similarity=0.099 Sum_probs=62.0
Q ss_pred hHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC-----ceEEEEeCCCCceeEEEee--cCeec-cccceeecchHH
Q psy429 3 GTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYAL-PHAILRLDLAGR 74 (243)
Q Consensus 3 ~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~-----~~~lVvd~G~~~t~v~pv~--~g~~~-~~~~~~~~~gG~ 74 (243)
+.+|+.+.+ ..+.-|++-+.+++.| .+|++++|. ..-+|+|+|.+.++++-+- +|... .....-..+||+
T Consensus 187 ~~qR~a~~~-Aa~~AGl~v~~li~Ep-tAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~ 264 (663)
T PTZ00400 187 DSQRQATKD-AGKIAGLDVLRIINEP-TAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGE 264 (663)
T ss_pred HHHHHHHHH-HHHHcCCceEEEeCch-HHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHH
Confidence 456665544 5667799999999999 999999884 4789999999999997542 45332 223344689999
Q ss_pred HHHHHHHHHHhh
Q psy429 75 DLTDYLMKILTE 86 (243)
Q Consensus 75 ~~~~~l~~ll~~ 86 (243)
++++.|.+.+..
T Consensus 265 d~D~~l~~~l~~ 276 (663)
T PTZ00400 265 DFDQRILNYLIA 276 (663)
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
No 63
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=95.00 E-value=0.13 Score=49.30 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=60.8
Q ss_pred hHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC-----ceEEEEeCCCCceeEEEe--ecCee-ccccceeecchHH
Q psy429 3 GTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR-----TTGIVLDSGDGVSHTVPI--YEGYA-LPHAILRLDLAGR 74 (243)
Q Consensus 3 ~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~-----~~~lVvd~G~~~t~v~pv--~~g~~-~~~~~~~~~~gG~ 74 (243)
+.+|+.+-+. .+.-|+.-+.+++.| .+|++++|. .+-+|+|+|.+.+.++-+ .+|.. +.....-..+||+
T Consensus 154 ~~qR~a~~~A-a~~AGl~v~~li~EP-tAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~ 231 (595)
T PRK01433 154 DAARGEVMLA-AKIAGFEVLRLIAEP-TAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGN 231 (595)
T ss_pred HHHHHHHHHH-HHHcCCCEEEEecCc-HHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChH
Confidence 4556555544 777899999999999 999999874 357999999999988654 34422 1222233579999
Q ss_pred HHHHHHHHHHhhc
Q psy429 75 DLTDYLMKILTER 87 (243)
Q Consensus 75 ~~~~~l~~ll~~~ 87 (243)
++++.|.+.+..+
T Consensus 232 d~D~~l~~~~~~~ 244 (595)
T PRK01433 232 DIDVVITQYLCNK 244 (595)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887654
No 64
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=94.75 E-value=0.17 Score=48.97 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC-------ceEEEEeCCCCceeEEEe--ecCee-ccccceeecch
Q psy429 3 GTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR-------TTGIVLDSGDGVSHTVPI--YEGYA-LPHAILRLDLA 72 (243)
Q Consensus 3 ~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~-------~~~lVvd~G~~~t~v~pv--~~g~~-~~~~~~~~~~g 72 (243)
+.+|+.+. -..+.-++.-+.+++.+ .+|++++|. .+.+|+|+|++.+.++=+ .+|.. +.....-..+|
T Consensus 153 ~~qR~a~~-~Aa~~AGl~v~~li~Ep-tAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lG 230 (653)
T PTZ00009 153 DSQRQATK-DAGTIAGLNVLRIINEP-TAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLG 230 (653)
T ss_pred HHHHHHHH-HHHHHcCCceeEEecch-HHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCC
Confidence 45565544 46677899999999999 999888763 478999999999988654 24432 11222345899
Q ss_pred HHHHHHHHHHHHhh
Q psy429 73 GRDLTDYLMKILTE 86 (243)
Q Consensus 73 G~~~~~~l~~ll~~ 86 (243)
|+++++.|.+.+..
T Consensus 231 G~d~D~~l~~~~~~ 244 (653)
T PTZ00009 231 GEDFDNRLVEFCVQ 244 (653)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999877653
No 65
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=94.53 E-value=0.16 Score=48.38 Aligned_cols=82 Identities=22% Similarity=0.190 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC------ceEEEEeCCCCceeEEEe--ecCeec-cccceeecchH
Q psy429 3 GTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR------TTGIVLDSGDGVSHTVPI--YEGYAL-PHAILRLDLAG 73 (243)
Q Consensus 3 ~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~------~~~lVvd~G~~~t~v~pv--~~g~~~-~~~~~~~~~gG 73 (243)
+.+|+.+ .-..+.-|++.+.+++.+ .+|+++++. .+-+|+|+|++.+.++-+ .+|..- ........+||
T Consensus 148 ~~qr~~~-~~Aa~~agl~~~~li~Ep-~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG 225 (602)
T PF00012_consen 148 DEQRQAL-RDAAELAGLNVLRLINEP-TAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGG 225 (602)
T ss_dssp HHHHHHH-HHHHHHTT-EEEEEEEHH-HHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSH
T ss_pred hhhhhcc-cccccccccccceeeccc-ccccccccccccccccceeccccccceEeeeehhccccccccccccccccccc
Confidence 3444444 445567788889999999 988877753 589999999999987755 345322 22334568999
Q ss_pred HHHHHHHHHHHhh
Q psy429 74 RDLTDYLMKILTE 86 (243)
Q Consensus 74 ~~~~~~l~~ll~~ 86 (243)
+++++.|.+.+.+
T Consensus 226 ~~~D~~l~~~~~~ 238 (602)
T PF00012_consen 226 RDFDEALAEYLLE 238 (602)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ceecceeeccccc
Confidence 9999999988754
No 66
>PRK11678 putative chaperone; Provisional
Probab=94.46 E-value=0.33 Score=44.84 Aligned_cols=69 Identities=16% Similarity=0.120 Sum_probs=53.1
Q ss_pred HHHhhhhcCCCeEEEecchhHHHHhhcCC-----ceEEEEeCCCCceeEEEee-cC----------eeccccceeecchH
Q psy429 10 VRIMFETFNTPAMYVAIQAAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY-EG----------YALPHAILRLDLAG 73 (243)
Q Consensus 10 ~e~~FE~~~~~~~~~~~~~~~~~~~~~g~-----~~~lVvd~G~~~t~v~pv~-~g----------~~~~~~~~~~~~gG 73 (243)
..-..+.-|++.+.+++.| .+|++++|. .+-+|+|+|...+.++=+- ++ .++-++. ..+||
T Consensus 176 l~~Aa~~AG~~~v~li~EP-tAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G--~~lGG 252 (450)
T PRK11678 176 LERAAKRAGFKDVEFQFEP-VAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG--QRIGG 252 (450)
T ss_pred HHHHHHHcCCCEEEEEcCH-HHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC--CCCCh
Confidence 4566788899999999999 999999873 5789999999999876542 21 1222222 36999
Q ss_pred HHHHHHHH
Q psy429 74 RDLTDYLM 81 (243)
Q Consensus 74 ~~~~~~l~ 81 (243)
+++++.|.
T Consensus 253 ~DfD~~L~ 260 (450)
T PRK11678 253 NDLDIALA 260 (450)
T ss_pred HHHHHHHH
Confidence 99999985
No 67
>PRK13411 molecular chaperone DnaK; Provisional
Probab=94.35 E-value=0.24 Score=47.98 Aligned_cols=82 Identities=16% Similarity=0.144 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC------ceEEEEeCCCCceeEEEe--ecCee-ccccceeecchH
Q psy429 3 GTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR------TTGIVLDSGDGVSHTVPI--YEGYA-LPHAILRLDLAG 73 (243)
Q Consensus 3 ~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~------~~~lVvd~G~~~t~v~pv--~~g~~-~~~~~~~~~~gG 73 (243)
+.+|+.+.+ ..+.-|+.-+.+++.| .+|++++|. .+-+|+|+|.+.+.++-+ .+|.. +.....-..+||
T Consensus 146 ~~qR~a~~~-Aa~~AGl~v~~li~EP-tAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG 223 (653)
T PRK13411 146 DAQRQATKD-AGTIAGLEVLRIINEP-TAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGG 223 (653)
T ss_pred cHHHHHHHH-HHHHcCCCeEEEecch-HHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCH
Confidence 456666654 5667789999999999 999988874 358999999999988743 22321 222233457999
Q ss_pred HHHHHHHHHHHhh
Q psy429 74 RDLTDYLMKILTE 86 (243)
Q Consensus 74 ~~~~~~l~~ll~~ 86 (243)
+++++.|.+.+.+
T Consensus 224 ~dfD~~l~~~l~~ 236 (653)
T PRK13411 224 DDFDNCIVDWLVE 236 (653)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877754
No 68
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=93.83 E-value=0.035 Score=45.36 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=55.7
Q ss_pred hhhhcCCCeEEEecchhHHHHhhcCCceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHH
Q psy429 13 MFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 80 (243)
Q Consensus 13 ~FE~~~~~~~~~~~~~~~~~~~~~g~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l 80 (243)
+.|.-+....+..+.| .++++-.+...|-|||+|...|-|.-+-+|.++..+- -+.||.+++-.|
T Consensus 115 ViESAGlevl~vlDEP-TAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~AD--EpTGGtHmtLvl 179 (277)
T COG4820 115 VIESAGLEVLHVLDEP-TAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYSAD--EPTGGTHMTLVL 179 (277)
T ss_pred eecccCceeeeecCCc-hhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEecc--CCCCceeEEEEE
Confidence 4677788889999999 9999999999999999999999999999999997743 378888665433
No 69
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=93.83 E-value=0.39 Score=46.57 Aligned_cols=82 Identities=17% Similarity=0.064 Sum_probs=60.1
Q ss_pred hHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC-----ceEEEEeCCCCceeEEEee--cCee-ccccceeecchHH
Q psy429 3 GTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGR 74 (243)
Q Consensus 3 ~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~-----~~~lVvd~G~~~t~v~pv~--~g~~-~~~~~~~~~~gG~ 74 (243)
+.+|+.+. -..+.-|+.-+.+++.| .+|+.++|. .+-+|+|+|...+.++=+- +|.. +.....-..+||+
T Consensus 173 ~~qR~at~-~Aa~~AGl~v~rlInEP-tAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~ 250 (657)
T PTZ00186 173 DAQRQATK-DAGTIAGLNVIRVVNEP-TAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGE 250 (657)
T ss_pred hHHHHHHH-HHHHHcCCCeEEEEcCh-HHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCch
Confidence 34555543 35567788999999999 999998874 4789999999999887553 5533 2223345689999
Q ss_pred HHHHHHHHHHhh
Q psy429 75 DLTDYLMKILTE 86 (243)
Q Consensus 75 ~~~~~l~~ll~~ 86 (243)
++++.|.+.+..
T Consensus 251 DfD~~l~~~~~~ 262 (657)
T PTZ00186 251 DFDLALSDYILE 262 (657)
T ss_pred hHHHHHHHHHHH
Confidence 999988877653
No 70
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=0.58 Score=44.68 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=61.6
Q ss_pred HHHHHHhhhhcCCCeEEEecchhHHHHhhcCC-----ceEEEEeCCCCceeEEEe--ecC-eeccccceeecchHHHHHH
Q psy429 7 QGVVRIMFETFNTPAMYVAIQAAVLSLYASGR-----TTGIVLDSGDGVSHTVPI--YEG-YALPHAILRLDLAGRDLTD 78 (243)
Q Consensus 7 ~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~-----~~~lVvd~G~~~t~v~pv--~~g-~~~~~~~~~~~~gG~~~~~ 78 (243)
.+.+.-..+.-+++-+.+.+.| .+|+|++|. .+-+|+|+|.+.+.+.=| -+| +..........+||++++.
T Consensus 136 R~at~~A~~iaGl~vlrlinEP-tAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~ 214 (579)
T COG0443 136 RQATKDAARIAGLNVLRLINEP-TAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDN 214 (579)
T ss_pred HHHHHHHHHHcCCCeEEEecch-HHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHH
Confidence 4455556778899999999999 999999984 589999999999998755 334 2233356677999999999
Q ss_pred HHHHHHhh
Q psy429 79 YLMKILTE 86 (243)
Q Consensus 79 ~l~~ll~~ 86 (243)
.|...+..
T Consensus 215 ~l~~~~~~ 222 (579)
T COG0443 215 ALIDYLVM 222 (579)
T ss_pred HHHHHHHH
Confidence 88876643
No 71
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=92.99 E-value=0.3 Score=42.78 Aligned_cols=80 Identities=14% Similarity=0.282 Sum_probs=62.7
Q ss_pred HHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC----ce-EEEEeCCCCceeEEEeecCeeccccceeecchHHHHHH
Q psy429 4 TTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR----TT-GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 78 (243)
Q Consensus 4 ~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~----~~-~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~ 78 (243)
-.|+.+-|.. |+-+...+++.+.| .+++...|. ++ ..|||+|...|.+.-+-.|-.... ....+||+.+++
T Consensus 115 VErrAi~ea~-~~aGa~~V~lieEp-~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~~--~Sirv~GD~~De 190 (342)
T COG1077 115 VERRAIKEAA-ESAGAREVYLIEEP-MAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVSS--SSVRVGGDKMDE 190 (342)
T ss_pred HHHHHHHHHH-HhccCceEEEeccH-HHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEEE--eeEEEecchhhH
Confidence 3455554443 45678899999999 999999985 45 899999999999887766655544 456789999999
Q ss_pred HHHHHHhhc
Q psy429 79 YLMKILTER 87 (243)
Q Consensus 79 ~l~~ll~~~ 87 (243)
.+.+.+.++
T Consensus 191 ~Ii~yvr~~ 199 (342)
T COG1077 191 AIIVYVRKK 199 (342)
T ss_pred HHHHHHHHH
Confidence 999988866
No 72
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=92.93 E-value=0.23 Score=43.63 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=52.5
Q ss_pred hcCCCeEEEecchhHHHHhhcC-----CceEEEEeCCCCceeEEEeecCeeccc-cceeecchHHHHHHHHHHHHhhcCc
Q psy429 16 TFNTPAMYVAIQAAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDYLMKILTERGY 89 (243)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g-----~~~~lVvd~G~~~t~v~pv~~g~~~~~-~~~~~~~gG~~~~~~l~~ll~~~~~ 89 (243)
.+++..+.+.|++ +.|.|..- ..+.+|||+|+..|.++-|..+....+ +....++|-..+.+.+.+.|...+.
T Consensus 137 ~i~I~~V~V~PQ~-~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~~~ 215 (318)
T PF06406_consen 137 TITIKDVEVFPQS-VGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRSAGI 215 (318)
T ss_dssp --EEEEEEEEESS-HHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT--SB
T ss_pred eEEEeeEEEEccc-HHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHHhcC
Confidence 4557789999999 98888642 367899999999999988877655444 3445688999999999999987443
Q ss_pred c
Q psy429 90 S 90 (243)
Q Consensus 90 ~ 90 (243)
+
T Consensus 216 ~ 216 (318)
T PF06406_consen 216 D 216 (318)
T ss_dssp H
T ss_pred C
Confidence 3
No 73
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=91.82 E-value=0.42 Score=42.33 Aligned_cols=70 Identities=21% Similarity=0.322 Sum_probs=46.6
Q ss_pred hhhhcCCCeEEEecch-hHHHHhhcC---------CceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHHHH
Q psy429 13 MFETFNTPAMYVAIQA-AVLSLYASG---------RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 82 (243)
Q Consensus 13 ~FE~~~~~~~~~~~~~-~~~~~~~~g---------~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l~~ 82 (243)
+|+..|..-..+-.++ +++-+|... ..+-++||+|++.|+++=+.+|.++.. +.+++||+++++.+.+
T Consensus 144 ~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f~--R~i~~G~~~l~~~i~~ 221 (340)
T PF11104_consen 144 LFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIFS--RSIPIGGNDLTEAIAR 221 (340)
T ss_dssp HHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHH
T ss_pred HHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEEE--EEEeeCHHHHHHHHHH
Confidence 5777777665553332 033344331 235689999999999999999998854 7889999999999886
Q ss_pred HH
Q psy429 83 IL 84 (243)
Q Consensus 83 ll 84 (243)
.+
T Consensus 222 ~~ 223 (340)
T PF11104_consen 222 EL 223 (340)
T ss_dssp HT
T ss_pred hc
Confidence 64
No 74
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=91.04 E-value=1.2 Score=38.15 Aligned_cols=72 Identities=11% Similarity=0.052 Sum_probs=50.8
Q ss_pred cCCCCCCcccCHHHHHHHHHHHhh---ccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhcc
Q psy429 164 KYPIEHGIVTNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCC 238 (243)
Q Consensus 164 ~~p~~~G~i~d~d~~e~l~~~~~~---~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~ 238 (243)
+.++++|.|.|++.....+.++.. +.++.+ -..+.++-|......+|..+. -..|.-++.-..+...+..++
T Consensus 55 ~~~vr~G~i~di~~a~~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a 129 (267)
T PRK15080 55 ADVVRDGIVVDFIGAVTIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAA 129 (267)
T ss_pred ccccCCCEEeeHHHHHHHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHH
Confidence 467899999999999999988874 233443 345666778777666666655 566777888777777665543
No 75
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.56 E-value=0.42 Score=41.97 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=38.7
Q ss_pred EEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHHHHHHh
Q psy429 41 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILT 85 (243)
Q Consensus 41 ~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l~~ll~ 85 (243)
.+|+|+|+..|.+.=+++|+++.. +..++||+.+++.+.+..+
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly~--r~~~~g~~Qlt~~i~r~~~ 237 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILYT--REVPVGTDQLTQEIQRAYS 237 (354)
T ss_pred heeeeecccceEEEEEECCeeeeE--eeccCcHHHHHHHHHHHhC
Confidence 469999999999999999999977 8899999999999887654
No 76
>PLN03184 chloroplast Hsp70; Provisional
Probab=86.88 E-value=1.6 Score=42.48 Aligned_cols=64 Identities=5% Similarity=-0.039 Sum_probs=45.4
Q ss_pred cCHHHHHHHHHHHhh---ccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhccc
Q psy429 173 TNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCT 239 (243)
Q Consensus 173 ~d~d~~e~l~~~~~~---~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y 239 (243)
.-.+....++.++.. ..++. .-..+++|.|...+..+|+.+.+ ..+.-++.-+.+.+.+..|+.
T Consensus 148 speei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAl 214 (673)
T PLN03184 148 AAEEISAQVLRKLVDDASKFLND--KVTKAVITVPAYFNDSQRTATKD-AGRIAGLEVLRIINEPTAASL 214 (673)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHH-HHHHCCCCeEEEeCcHHHHHH
Confidence 334555666666543 22332 34679999999999999987765 557789999999998888764
No 77
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=86.61 E-value=0.8 Score=39.76 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=22.0
Q ss_pred hcCCceEEEEeCCCCceeEEEeecCeeccc
Q psy429 35 ASGRTTGIVLDSGDGVSHTVPIYEGYALPH 64 (243)
Q Consensus 35 ~~g~~~~lVvd~G~~~t~v~pv~~g~~~~~ 64 (243)
..|..+++++|+|...|+|.+|.+|.+...
T Consensus 73 ~~g~~~~i~vDmGGTTtDi~~i~~G~p~~~ 102 (290)
T PF01968_consen 73 LTGLENAIVVDMGGTTTDIALIKDGRPEIS 102 (290)
T ss_dssp -HT-SSEEEEEE-SS-EEEEEEETTEE---
T ss_pred cCCCCCEEEEeCCCCEEEEEEEECCeeecc
Confidence 458889999999999999999999998644
No 78
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=86.20 E-value=1.1 Score=42.88 Aligned_cols=42 Identities=7% Similarity=0.035 Sum_probs=34.5
Q ss_pred CceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhccc
Q psy429 197 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCT 239 (243)
Q Consensus 197 ~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y 239 (243)
..+++|.|...+..+|+.+.+ ..+.-|+.-+.+.+.+..|++
T Consensus 131 ~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl 172 (595)
T TIGR02350 131 TEAVITVPAYFNDAQRQATKD-AGKIAGLEVLRIINEPTAAAL 172 (595)
T ss_pred CeEEEEECCCCCHHHHHHHHH-HHHHcCCceEEEecchHHHHH
Confidence 568999999999999988776 566678888888888887764
No 79
>CHL00094 dnaK heat shock protein 70
Probab=85.92 E-value=2 Score=41.38 Aligned_cols=64 Identities=5% Similarity=-0.024 Sum_probs=44.1
Q ss_pred cCHHHHHHHHHHHhh---ccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhccc
Q psy429 173 TNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCT 239 (243)
Q Consensus 173 ~d~d~~e~l~~~~~~---~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y 239 (243)
...+....++.++.. ..++. .-..+++|.|...+..+|+.+.+. .+.-|+.-+.+.+.+..|+.
T Consensus 111 s~eei~a~iL~~l~~~ae~~lg~--~v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAl 177 (621)
T CHL00094 111 SPEEISAQVLRKLVEDASKYLGE--TVTQAVITVPAYFNDSQRQATKDA-GKIAGLEVLRIINEPTAASL 177 (621)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeccHHHHHH
Confidence 334455566666543 22332 235688899999998888887665 46778888889988888765
No 80
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=84.99 E-value=0.73 Score=42.50 Aligned_cols=52 Identities=25% Similarity=0.304 Sum_probs=41.6
Q ss_pred ceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHH-----------HHHHHHhhcCcccc
Q psy429 39 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD-----------YLMKILTERGYSFT 92 (243)
Q Consensus 39 ~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~-----------~l~~ll~~~~~~~~ 92 (243)
...++||+|.+.|++.-..+|.++.. ..+++||+++|+ ..++++.+.+.++.
T Consensus 146 ~gVa~IDIGgGTT~iaVf~~G~l~~T--~~l~vGG~~IT~D~~~~i~yis~~~~~l~~~~~~~~~ 208 (475)
T PRK10719 146 TRVLNIDIGGGTANYALFDAGKVIDT--ACLNVGGRLIETDSQGRVTYISPPGQMILDELGLAIT 208 (475)
T ss_pred CceEEEEeCCCceEEEEEECCEEEEE--EEEecccceEEECCCCCEEEEChHHHHHHHHcCCCcc
Confidence 57899999999999999999998765 667999997765 35666777666643
No 81
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=84.23 E-value=2 Score=36.90 Aligned_cols=42 Identities=24% Similarity=0.367 Sum_probs=33.8
Q ss_pred CCceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHH
Q psy429 37 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 80 (243)
Q Consensus 37 g~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l 80 (243)
...+++|+|+|.++|.++-+-+|.+... ..+|+|.-.+++.+
T Consensus 110 ~~~~~lviDIGGGStEl~~~~~~~~~~~--~Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 110 PDKNGLVIDIGGGSTELILFENGKVVFS--QSLPLGAVRLTERF 151 (285)
T ss_dssp TTSSEEEEEEESSEEEEEEEETTEEEEE--EEES--HHHHHHHH
T ss_pred ccCCEEEEEECCCceEEEEEECCeeeEe--eeeehHHHHHHHHH
Confidence 5678999999999999999999887654 67899998777665
No 82
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=83.80 E-value=2.5 Score=41.15 Aligned_cols=44 Identities=5% Similarity=0.011 Sum_probs=36.4
Q ss_pred CCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhcccc
Q psy429 196 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTI 240 (243)
Q Consensus 196 ~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~ 240 (243)
-..+++|.|...+..+|+.+.+ ..+.-|++-+.+.+.+..|++-
T Consensus 174 v~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAla 217 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATKD-AGKIAGLDVLRIINEPTAAALA 217 (663)
T ss_pred CceEEEEECCCCCHHHHHHHHH-HHHHcCCceEEEeCchHHHHHH
Confidence 4679999999999999987765 5667799999999998887753
No 83
>PRK13410 molecular chaperone DnaK; Provisional
Probab=83.41 E-value=2.8 Score=40.84 Aligned_cols=42 Identities=5% Similarity=-0.035 Sum_probs=34.1
Q ss_pred CceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhccc
Q psy429 197 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCT 239 (243)
Q Consensus 197 ~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y 239 (243)
..+++|.|...+..+|+.+.+- .+.-|+.-+.+.+.+..|+.
T Consensus 136 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAl 177 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQATRDA-GRIAGLEVERILNEPTAAAL 177 (668)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHH
Confidence 4699999999999999876555 47778888888888887764
No 84
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=82.36 E-value=2.1 Score=41.10 Aligned_cols=62 Identities=8% Similarity=-0.009 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhh---ccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhccc
Q psy429 175 WDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCT 239 (243)
Q Consensus 175 ~d~~e~l~~~~~~---~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y 239 (243)
.+....++.++.. ..++. .-..+++|.|...+..+|+.+.+. .+.-|+.-+.+.+.+..|+.
T Consensus 107 ~ei~a~iL~~lk~~a~~~lg~--~v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAl 171 (599)
T TIGR01991 107 VEVSAEILKKLKQRAEESLGG--DLVGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAV 171 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHHHH-HHHcCCCceEEecCHHHHHH
Confidence 3444555555532 23332 245799999999999999887655 67889999999998888764
No 85
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=81.08 E-value=2 Score=41.37 Aligned_cols=43 Identities=7% Similarity=0.020 Sum_probs=34.4
Q ss_pred CCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhccc
Q psy429 196 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCT 239 (243)
Q Consensus 196 ~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y 239 (243)
-..+++|.|...+..+|+.+.+ ..+.-|+.-+.+.+.+..|++
T Consensus 133 v~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl 175 (627)
T PRK00290 133 VTEAVITVPAYFNDAQRQATKD-AGKIAGLEVLRIINEPTAAAL 175 (627)
T ss_pred CceEEEEECCCCCHHHHHHHHH-HHHHcCCceEEEecchHHHHH
Confidence 3578999999999999987754 456678888888888887764
No 86
>PRK13411 molecular chaperone DnaK; Provisional
Probab=79.92 E-value=3.4 Score=40.08 Aligned_cols=43 Identities=7% Similarity=0.020 Sum_probs=35.7
Q ss_pred CCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhccc
Q psy429 196 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCT 239 (243)
Q Consensus 196 ~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y 239 (243)
-..+++|.|...+..+|+.+.+ ..+.-|+.-+.+.+.+..|++
T Consensus 133 v~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAl 175 (653)
T PRK13411 133 VTQAVITVPAYFTDAQRQATKD-AGTIAGLEVLRIINEPTAAAL 175 (653)
T ss_pred cceEEEEECCCCCcHHHHHHHH-HHHHcCCCeEEEecchHHHHH
Confidence 3568999999999999998766 566778888899998888765
No 87
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=79.61 E-value=3.6 Score=39.63 Aligned_cols=61 Identities=10% Similarity=-0.014 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhh---ccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhccc
Q psy429 176 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCT 239 (243)
Q Consensus 176 d~~e~l~~~~~~---~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y 239 (243)
+....++.++.. ..++. .-..+++|.|...+..+|+.+. -..+.-|+.-+.+.+.+..|++
T Consensus 128 ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~-~Aa~~AGl~v~~li~EPtAAAl 191 (616)
T PRK05183 128 EVSAEILKALRQRAEETLGG--ELDGAVITVPAYFDDAQRQATK-DAARLAGLNVLRLLNEPTAAAI 191 (616)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHH-HHHHHcCCCeEEEecchHHHHH
Confidence 444455555542 22332 3357899999999999998774 4577889999999999988875
No 88
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=78.93 E-value=2.7 Score=37.07 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=25.3
Q ss_pred CCceEEEEeCCCCceeEEEeecCeeccc
Q psy429 37 GRTTGIVLDSGDGVSHTVPIYEGYALPH 64 (243)
Q Consensus 37 g~~~~lVvd~G~~~t~v~pv~~g~~~~~ 64 (243)
...+++.+|+|...|.|+||.+|.+...
T Consensus 126 ~~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 126 RIPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred cCCCEEEEEcCccceeeEEecCCEeeee
Confidence 3689999999999999999999998765
No 89
>PRK11678 putative chaperone; Provisional
Probab=75.91 E-value=4.9 Score=37.20 Aligned_cols=45 Identities=9% Similarity=-0.044 Sum_probs=33.7
Q ss_pred CCceEeecCCCCC-----hhHHHHH--HHHhhhcCCCCeEEeeehhhhcccc
Q psy429 196 EHPVLLTEAPLNP-----KANREKM--TQIMFETFNTPAMYVAIQAVNCCTI 240 (243)
Q Consensus 196 ~~pvlltep~~~~-----~~~re~~--~eilFE~~~vpav~~~~~~~ls~y~ 240 (243)
-..++++-|.... ..+|+.. ..-..+.-|++.+.+.+.+..|++-
T Consensus 149 v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~ 200 (450)
T PRK11678 149 ITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLD 200 (450)
T ss_pred CCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHH
Confidence 3578999998764 5555432 4556788899999999999988764
No 90
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=74.62 E-value=7.6 Score=37.32 Aligned_cols=62 Identities=8% Similarity=0.027 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhh---ccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhcccc
Q psy429 176 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTI 240 (243)
Q Consensus 176 d~~e~l~~~~~~---~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~ 240 (243)
+....++.++-. ..++. .-..+++|.|...+..+|+.+.+- .+.-|+.-+.+.+.+..|++-
T Consensus 120 ei~a~iL~~lk~~ae~~lg~--~v~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAla 184 (595)
T PRK01433 120 EIAAEIFIYLKNQAEEQLKT--NITKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRLIAEPTAAAYA 184 (595)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEEecCcHHHHHH
Confidence 444445555532 22332 335799999999999888876654 677888888899888887763
No 91
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=73.91 E-value=6.9 Score=38.00 Aligned_cols=43 Identities=5% Similarity=-0.001 Sum_probs=35.3
Q ss_pred CCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhccc
Q psy429 196 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCT 239 (243)
Q Consensus 196 ~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y 239 (243)
-..+++|.|...+..+|+.+.+ ..+.-|+.-+.+.+.+..|+.
T Consensus 140 v~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl 182 (653)
T PTZ00009 140 VKDAVVTVPAYFNDSQRQATKD-AGTIAGLNVLRIINEPTAAAI 182 (653)
T ss_pred cceeEEEeCCCCCHHHHHHHHH-HHHHcCCceeEEecchHHHHH
Confidence 4579999999999988887665 667789998889988887765
No 92
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=73.72 E-value=6.4 Score=32.96 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+|+|. .++.||+++.-...+.+++++|+++|-|.||=
T Consensus 74 dv~~~I~~~AF~------~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (229)
T cd08627 74 DVLHTIKEHAFV------TSEYPIILSIEDHCSIVQQRNMAQHFKKVFGD 117 (229)
T ss_pred HHHHHHHHhhcc------CCCCCEEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 456667777763 47899999999999999999999999998885
No 93
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=73.40 E-value=6.3 Score=33.65 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .++.||+++.-...+.+++++||++|-|.||=
T Consensus 74 ~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd 117 (258)
T cd08630 74 DVIQAVRQHAFT------ASPYPVILSLENHCGLEQQAAMARHLQTILGD 117 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHhh
Confidence 456777777773 48899999999999999999999999998874
No 94
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=73.39 E-value=6.2 Score=33.64 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .++.||+++.-...+..++++|+++|-|.||=
T Consensus 76 dv~~aI~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 119 (257)
T cd08626 76 DVIQAIKDTAFV------TSDYPVILSFENHCSKPQQYKLAKYCEEIFGD 119 (257)
T ss_pred HHHHHHHHHhcc------cCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 456777778873 37899999999999999999999999888874
No 95
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=72.99 E-value=6.2 Score=33.63 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .++.||+++.-...+.+++++|+++|-|.||=
T Consensus 74 ~v~~~I~~~AF~------~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 74 DVLRAIRDYAFK------ASPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 456777777773 47899999999999999999999999988874
No 96
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=72.79 E-value=7 Score=33.22 Aligned_cols=44 Identities=27% Similarity=0.371 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .++.||+++.-...+.+++++|+++|-|.||=
T Consensus 74 dv~~aI~~~AF~------~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (253)
T cd08632 74 DVIETINKYAFV------KNEFPVILSIENHCSIQQQKKIAQYLKEIFGD 117 (253)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhh
Confidence 456777777763 48899999999999999999999999988873
No 97
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=72.51 E-value=2.7 Score=35.89 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=21.2
Q ss_pred CceEEEEeCCCCceeEEEeecCe
Q psy429 38 RTTGIVLDSGDGVSHTVPIYEGY 60 (243)
Q Consensus 38 ~~~~lVvd~G~~~t~v~pv~~g~ 60 (243)
..+++.||+|...|.++||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 36899999999999999999996
No 98
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=72.40 E-value=15 Score=35.11 Aligned_cols=136 Identities=14% Similarity=0.097 Sum_probs=75.6
Q ss_pred heeeeccCCCccccCcCCCC-CCCcccCcceeccCCCcccccCCCccccccchhhhc-----c-ccccccCCCCC-----
Q psy429 102 AALVVDNGSGMCKAGFAGDD-APRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK-----R-GILTLKYPIEH----- 169 (243)
Q Consensus 102 ~~vViD~Gs~~~K~G~ag~~-~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~-----~-~~~~l~~p~~~----- 169 (243)
.+|=||+|+.++-+.+.... .|. ++++..|....+....-......++|..+... . ....+++.+-+
T Consensus 6 ~~iGIDlGTTNS~vA~~~~~~~~~-vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~~ 84 (579)
T COG0443 6 KAIGIDLGTTNSVVAVMRGGGLPK-VIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNGL 84 (579)
T ss_pred eEEEEEcCCCcEEEEEEeCCCCce-EecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCCCC
Confidence 46779999999998877655 455 33443333222211111111246677665221 1 11222222221
Q ss_pred -------CcccCHH-HHHHHHHHHhh---ccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhcc
Q psy429 170 -------GIVTNWD-DMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCC 238 (243)
Q Consensus 170 -------G~i~d~d-~~e~l~~~~~~---~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~ 238 (243)
|.....+ ....++.++-. ..| ...-..+++|-|.+....+|+.+. -..+.-|++-+.+.+.+..|+
T Consensus 85 ~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~l--g~~v~~~VItVPayF~d~qR~at~-~A~~iaGl~vlrlinEPtAAA 161 (579)
T COG0443 85 KISVEVDGKKYTPEEISAMILTKLKEDAEAYL--GEKVTDAVITVPAYFNDAQRQATK-DAARIAGLNVLRLINEPTAAA 161 (579)
T ss_pred cceeeeCCeeeCHHHHHHHHHHHHHHHHHHhh--CCCcceEEEEeCCCCCHHHHHHHH-HHHHHcCCCeEEEecchHHHH
Confidence 1122222 22334444321 122 235578999999999988887554 456679999999999999988
Q ss_pred ccc
Q psy429 239 TIK 241 (243)
Q Consensus 239 y~~ 241 (243)
|-+
T Consensus 162 lay 164 (579)
T COG0443 162 LAY 164 (579)
T ss_pred HHh
Confidence 743
No 99
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=72.27 E-value=6.8 Score=33.35 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .++.||+++.-...+.+++++||++|-|.||=
T Consensus 74 dv~~~I~~~AF~------~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~Gd 117 (254)
T cd08596 74 DVVEAINRSAFI------TSDYPVILSIENHCSLQQQRKMAEIFKTVFGE 117 (254)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 456777777773 37899999999999999999999999988874
No 100
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=72.25 E-value=10 Score=28.03 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=30.8
Q ss_pred EEEeCCCCceeEEEeecCeeccccceeecch--------HHHHH--HHHHHHHhh
Q psy429 42 IVLDSGDGVSHTVPIYEGYALPHAILRLDLA--------GRDLT--DYLMKILTE 86 (243)
Q Consensus 42 lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~g--------G~~~~--~~l~~ll~~ 86 (243)
++||+|.+.|.++-...|..-. ...+++| |.+++ +.+.+-+..
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~ 54 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIKI 54 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT-
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHHH
Confidence 6899999999998777765544 6788999 99999 777766653
No 101
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=72.07 E-value=7 Score=33.31 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .++.||+++.-...+..++++|+++|-|.||=
T Consensus 74 ~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd 117 (257)
T cd08595 74 EVITTVEKYAFE------KSDYPVVLSLENHCSTEQQEIMAHYLVSILGE 117 (257)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 456777777763 58899999999999999999999999988874
No 102
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=71.54 E-value=7.5 Score=32.53 Aligned_cols=44 Identities=27% Similarity=0.337 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .++.||+++.-...+.+++++||++|=|.||=
T Consensus 74 dv~~aI~~~AF~------~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (227)
T cd08594 74 DVIETINKYAFI------KNEYPVILSIENHCSVQQQKKMAQYLKEILGD 117 (227)
T ss_pred HHHHHHHHhhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 456777777773 48899999999989999999999999888874
No 103
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=71.49 E-value=7 Score=33.38 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .++.||+++.-...+.+++++|+++|=|.||=
T Consensus 74 ~v~~~I~~~aF~------~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 74 DVIQAIREYAFK------VSPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 456777777773 47899999999999999999999999988874
No 104
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=71.42 E-value=7 Score=33.34 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .++.||+++.-...+..++++||++|=|.||=
T Consensus 74 ~v~~~Ik~~AF~------~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lGd 117 (258)
T cd08631 74 DVVAAVAQYAFQ------VSDYPVILSLENHCGVEQQQTMAQHLTEILGE 117 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 456667777763 48899999999999999999999999888873
No 105
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=71.16 E-value=7.6 Score=33.03 Aligned_cols=44 Identities=27% Similarity=0.349 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .++.||+++.-...+.+++++|+++|-|.||=
T Consensus 74 ~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08633 74 DVIETINKYAFI------KNEYPVILSIENHCSVPQQKKMAQYLTEILGD 117 (254)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 456777777773 48899999999999999999999999888873
No 106
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=70.80 E-value=7.5 Score=27.54 Aligned_cols=50 Identities=18% Similarity=0.411 Sum_probs=35.9
Q ss_pred CCCcccCHHHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCC
Q psy429 168 EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 224 (243)
Q Consensus 168 ~~G~i~d~d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~ 224 (243)
+.|++.|+..+++.++.+.. . =||..|.-.+++. ...-|.||+.+|+.+.
T Consensus 42 ~~g~v~Df~~lk~~~~~i~~-~-----lDh~~Lne~~~~~-~pT~E~ia~~i~~~l~ 91 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVVD-R-----LDHALLNDVPGLE-NPTAENLARWIYDRLK 91 (92)
T ss_pred CccEEEEHHHHHHHHHHHHH-h-----CCCcEeeCCCCCC-CCCHHHHHHHHHHHHh
Confidence 57999999999999987653 2 3455555445443 3467899999998763
No 107
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=68.90 E-value=8.7 Score=32.23 Aligned_cols=44 Identities=27% Similarity=0.344 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .++.||+++.-...+.+++++||++|=|.||=
T Consensus 74 dv~~~Ik~~aF~------~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 74 DVCRAIKKYAFV------TSPYPLILSLEVHCDAEQQERMVEIMKETFGD 117 (231)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 456777777763 47899999999889999999999999998874
No 108
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=68.56 E-value=9.1 Score=32.07 Aligned_cols=44 Identities=27% Similarity=0.388 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .++.||+++.-...+.+++++|+++|=|.||=
T Consensus 74 dv~~~I~~~aF~------~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 117 (229)
T cd08592 74 DVLKTIKEHAFV------TSEYPVILSIENHCSLPQQRNMAQAFKEVFGD 117 (229)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHhH
Confidence 456667777763 48899999999989999999999999888874
No 109
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=68.24 E-value=9.2 Score=32.62 Aligned_cols=44 Identities=27% Similarity=0.332 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .++.||+++.-...+..++++||++|-|.||=
T Consensus 76 ~v~~aIk~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 119 (257)
T cd08591 76 DVIEAIAETAFK------TSEYPVILSFENHCSSKQQAKMAEYCREIFGD 119 (257)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 456666677763 48899999999999999999999999888873
No 110
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=67.99 E-value=9.7 Score=31.85 Aligned_cols=44 Identities=30% Similarity=0.369 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .++.||+++.-...+.+++++||++|=|.||=
T Consensus 74 dv~~~Ik~~aF~------~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lGd 117 (226)
T cd08558 74 DVIEAIKEYAFV------TSPYPVILSLENHCSLEQQKKMAQILKEIFGD 117 (226)
T ss_pred HHHHHHHHHhcc------cCCCCeEEEEecCCCHHHHHHHHHHHHHHHhh
Confidence 456777777774 37999999999999999999999999988874
No 111
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=67.02 E-value=9.7 Score=32.56 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .++.||+++.-...+.+++++|+++|=|.||=
T Consensus 74 dv~~~I~~~aF~------~s~yPvIlslE~Hc~~~qQ~~~a~~l~~~lG~ 117 (260)
T cd08597 74 SVIEAINEYAFV------ASEYPLILCIENHCSEKQQLVMAQYLKEIFGD 117 (260)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 456777777763 37899999999999999999999999888874
No 112
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=64.53 E-value=12 Score=32.03 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCC-ChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN-PKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~-~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .++.||+++.-... +..++++||++|-|.||=
T Consensus 76 dv~~~I~~~AF~------~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~~lGd 120 (261)
T cd08624 76 DAIEAIAESAFK------TSPYPVILSFENHVDSPKQQAKMAEYCRTIFGD 120 (261)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 456777777773 38999999987766 788999999999998885
No 113
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=63.94 E-value=13 Score=31.74 Aligned_cols=44 Identities=25% Similarity=0.402 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .++.||+++.-...+..++++|+++|=|.||=
T Consensus 74 dv~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08628 74 DVVQAIKDHAFV------TSEYPVILSIEEHCSVEQQRHMAKVFKEVFGD 117 (254)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 456667777763 37899999999988999999999998888874
No 114
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=62.86 E-value=15 Score=32.13 Aligned_cols=129 Identities=12% Similarity=0.078 Sum_probs=67.8
Q ss_pred eccCCCccccCcCC-CCC-CCcccCcceeccCCCcc-c-----------ccCCCccccccchhhhccccccccCCCCCCc
Q psy429 106 VDNGSGMCKAGFAG-DDA-PRAVFPSIVGRPRHQGV-M-----------VGMGQKDSYVGDEAQSKRGILTLKYPIEHGI 171 (243)
Q Consensus 106 iD~Gs~~~K~G~ag-~~~-P~~i~ps~vg~~~~~~~-~-----------~~~~~~~~~~g~~~~~~~~~~~l~~p~~~G~ 171 (243)
||+|-+.+|+=+.+ +.. =+.+|||.++....... . ...+...+++|+.+....+. .-.+-+.+.+
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~~~-~~~~~~~~~~ 80 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAADT-NRARQLHDEY 80 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhcccC-ccceeccccc
Confidence 79999999976532 223 24578888765422110 0 01223456778765322210 0011112222
Q ss_pred ccCHHHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhc--------CCCCeEEeeehhhhcc
Q psy429 172 VTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET--------FNTPAMYVAIQAVNCC 238 (243)
Q Consensus 172 i~d~d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~--------~~vpav~~~~~~~ls~ 238 (243)
..+ +....++.+++.. .+.+ ....|++-.|...-...|+.+.+.+-.. ..+..+.+.+|++-|.
T Consensus 81 ~~~-~~~~~L~~~Al~~-~~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~ 152 (320)
T TIGR03739 81 TET-PEYMALLRGALAL-SKVR-EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGAL 152 (320)
T ss_pred cCC-HHHHHHHHHHHHH-hcCC-CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHH
Confidence 222 3567777777642 2222 2223555556655566788888876543 4667777788876553
No 115
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=62.04 E-value=14 Score=31.48 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCC-ChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN-PKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~-~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .++.||+++.-... +..++++||++|-|.||=
T Consensus 76 dv~~~I~~~AF~------~S~yPvIlSlE~Hc~s~~qQ~~ma~~l~~~lGd 120 (258)
T cd08623 76 EVIEAIAECAFK------TSPFPILLSFENHVDSPKQQAKMAEYCRLIFGD 120 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 456777777773 48899999988777 588999999999998875
No 116
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=60.95 E-value=22 Score=34.65 Aligned_cols=43 Identities=9% Similarity=-0.005 Sum_probs=33.8
Q ss_pred CCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhccc
Q psy429 196 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCT 239 (243)
Q Consensus 196 ~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y 239 (243)
-..+++|.|......+|+.+.+ ..+.-|+.-+.+.+.+..|+.
T Consensus 160 v~~aVITVPayF~~~qR~at~~-Aa~~AGl~v~rlInEPtAAAl 202 (657)
T PTZ00186 160 VSNAVVTCPAYFNDAQRQATKD-AGTIAGLNVIRVVNEPTAAAL 202 (657)
T ss_pred cceEEEEECCCCChHHHHHHHH-HHHHcCCCeEEEEcChHHHHH
Confidence 3578999999999988887655 556678888888888877764
No 117
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=59.93 E-value=13 Score=34.76 Aligned_cols=39 Identities=15% Similarity=0.178 Sum_probs=30.8
Q ss_pred ceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHH
Q psy429 39 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 79 (243)
Q Consensus 39 ~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~ 79 (243)
.+++|+|+|.++|.++-+-+|.+.. ...+++|.-.+++.
T Consensus 132 ~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl~e~ 170 (496)
T PRK11031 132 DQRLVVDIGGASTELVTGTGAQATS--LFSLSMGCVTWLER 170 (496)
T ss_pred CCEEEEEecCCeeeEEEecCCceee--eeEEeccchHHHHH
Confidence 3589999999999999888877653 46789998766543
No 118
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=59.65 E-value=15 Score=31.43 Aligned_cols=44 Identities=23% Similarity=0.270 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCC-ChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN-PKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~-~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .++.||+++.-... +.+++++|+++|-|.||-
T Consensus 76 dv~~~I~~~aF~------~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~ilGd 120 (258)
T cd08625 76 DVIEAIAESAFK------TSPYPVILSFENHVDSAKQQAKMAEYCRSIFGD 120 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEehhcCCCHHHHHHHHHHHHHHHHH
Confidence 456677777773 37899999987777 688999999999887764
No 119
>KOG0101|consensus
Probab=54.59 E-value=63 Score=31.24 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=53.6
Q ss_pred HHHhhhhcCCCeEEEecchhHHHHhhcC-------CceEEEEeCCCCceeEEEee-c-Ce-eccccceeecchHHHHHHH
Q psy429 10 VRIMFETFNTPAMYVAIQAAVLSLYASG-------RTTGIVLDSGDGVSHTVPIY-E-GY-ALPHAILRLDLAGRDLTDY 79 (243)
Q Consensus 10 ~e~~FE~~~~~~~~~~~~~~~~~~~~~g-------~~~~lVvd~G~~~t~v~pv~-~-g~-~~~~~~~~~~~gG~~~~~~ 79 (243)
++---+..+++.+-+++.| .+++.|+| ..+-+|.|.|.....|..+. + |. .++....-.++||.++++.
T Consensus 162 t~~A~~iaGl~vlrii~EP-tAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~ 240 (620)
T KOG0101|consen 162 TKDAALIAGLNVLRIINEP-TAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNK 240 (620)
T ss_pred HHHHHHhcCCceeeeecch-HHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHH
Confidence 3444455677888899999 88888887 35679999999999888663 3 32 2222334468999998888
Q ss_pred HHHHHh
Q psy429 80 LMKILT 85 (243)
Q Consensus 80 l~~ll~ 85 (243)
|.+.+.
T Consensus 241 l~~h~~ 246 (620)
T KOG0101|consen 241 LVNHFA 246 (620)
T ss_pred HHHHHH
Confidence 877653
No 120
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=52.86 E-value=20 Score=26.80 Aligned_cols=52 Identities=19% Similarity=0.428 Sum_probs=34.0
Q ss_pred CCCcccCHHHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCC
Q psy429 168 EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 224 (243)
Q Consensus 168 ~~G~i~d~d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~ 224 (243)
+.|++.|+..++++++.++...| ||..|.-.++......-|.++..+|+.+.
T Consensus 44 ~~G~viDf~~lk~~~~~~~~~~l-----DH~~Ln~~~~~~~~pT~Enia~~i~~~l~ 95 (124)
T TIGR00039 44 KTGMVMDFSDLKKIVKEVIDEPL-----DHKLLNDDVNYLENPTSENVAVYIFDNLK 95 (124)
T ss_pred CceEEEEHHHHHHHHHHHhccCC-----CCceeccCCCCCCCCCHHHHHHHHHHHHH
Confidence 67999999999999988764222 45555543331222356778888777665
No 121
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=52.35 E-value=29 Score=29.13 Aligned_cols=48 Identities=25% Similarity=0.327 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEe
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYV 230 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~ 230 (243)
|.++.|=+++|. .++.||+++.-...+..++++|+++|=|.|| ..++.
T Consensus 74 dvl~~I~~~aF~------~s~yPvILslE~hcs~~qQ~~~a~~l~~~lG-d~L~~ 121 (228)
T cd08599 74 DCIKAIKENAFT------ASEYPVIITLENHLSPELQAKAAQILRETLG-DKLFY 121 (228)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEEecCCCHHHHHHHHHHHHHHHh-hhhcc
Confidence 345666666662 4789999999888889999999999999998 45554
No 122
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=51.53 E-value=15 Score=29.45 Aligned_cols=22 Identities=9% Similarity=0.265 Sum_probs=18.4
Q ss_pred CCCCCcccCHHHHHHHHHHHhh
Q psy429 166 PIEHGIVTNWDDMEKIWHHTFY 187 (243)
Q Consensus 166 p~~~G~i~d~d~~e~l~~~~~~ 187 (243)
-+++|.|.|.+.+.+.+..++.
T Consensus 36 gi~~G~I~d~~~~~~~I~~ai~ 57 (187)
T smart00842 36 GIRKGVIVDIEAAARAIREAVE 57 (187)
T ss_pred CccCcEEECHHHHHHHHHHHHH
Confidence 4789999999998888877774
No 123
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.90 E-value=26 Score=34.26 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=33.8
Q ss_pred CCCe--EEEecchhHH-HHhhcCCce--EEEEeCCCCceeEEEeecCeeccc
Q psy429 18 NTPA--MYVAIQAAVL-SLYASGRTT--GIVLDSGDGVSHTVPIYEGYALPH 64 (243)
Q Consensus 18 ~~~~--~~~~~~~~~~-~~~~~g~~~--~lVvd~G~~~t~v~pv~~g~~~~~ 64 (243)
+.|. +...+.+|+. ++|-+|..+ ++++|+|...|.+.-+.+|.+-..
T Consensus 252 ~~pv~tI~SGPAagvvGAa~ltg~~~g~~i~~DmGGTStDva~i~~G~pe~~ 303 (674)
T COG0145 252 EKPVETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTSTDVALIIDGEPEIS 303 (674)
T ss_pred cCCeeeEeeccHHHHHHHHHhcccccCCEEEEEcCCcceeeeeeecCcEEee
Confidence 4555 5555555443 334447777 999999999999999999987655
No 124
>PLN02222 phosphoinositide phospholipase C 2
Probab=49.78 E-value=25 Score=33.71 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .+++||+++.-...+..++.+||++|-|.||=
T Consensus 176 ~v~~~I~~~aF~------~s~yPvIlslE~Hc~~~qQ~~~a~~~~~~~g~ 219 (581)
T PLN02222 176 KCLKAIRAHAFD------VSDYPVVVTLEDHLTPDLQSKVAEMVTEIFGE 219 (581)
T ss_pred HHHHHHHHhccc------CCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 456666666663 47899999999999999999999999998874
No 125
>PLN02952 phosphoinositide phospholipase C
Probab=49.76 E-value=27 Score=33.58 Aligned_cols=44 Identities=16% Similarity=0.223 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+|+|. .+++||+++.-...+..++++||++|-|.||=
T Consensus 196 ~v~~~I~~~aF~------~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 239 (599)
T PLN02952 196 KCLKSIRDYAFS------SSPYPVIITLEDHLTPDLQAKVAEMATQIFGQ 239 (599)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 556777777763 47899999999999999999999999998875
No 126
>PLN02230 phosphoinositide phospholipase C 4
Probab=49.42 E-value=27 Score=33.62 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .+++||+++.-...+..++++||++|-|.||=
T Consensus 187 ~v~~~I~~~aF~------~s~yPvIlslE~hcs~~~Q~~~a~~~~~~~Gd 230 (598)
T PLN02230 187 KCLDSIKANAFA------ISKYPVIITLEDHLTPKLQFKVAKMITQTFGD 230 (598)
T ss_pred HHHHHHHHhccC------CCCCCeEEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 556777777763 48999999999999999999999999998875
No 127
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=49.20 E-value=19 Score=31.32 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=32.4
Q ss_pred ceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHH
Q psy429 39 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 80 (243)
Q Consensus 39 ~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l 80 (243)
.+++++|+|..+|.++-+.+|.+. ....+++|.-.+++.+
T Consensus 125 ~~~~v~DiGGGSte~~~~~~~~~~--~~~Sl~lG~vrl~e~f 164 (300)
T TIGR03706 125 ADGLVVDIGGGSTELILGKDFEPG--EGVSLPLGCVRLTEQF 164 (300)
T ss_pred CCcEEEEecCCeEEEEEecCCCEe--EEEEEccceEEhHHhh
Confidence 457999999999999988777654 4468899998777664
No 128
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=49.06 E-value=70 Score=27.29 Aligned_cols=66 Identities=17% Similarity=0.252 Sum_probs=42.4
Q ss_pred hhcCCCeEEEecchhHHHHhhc-------CCceEEEEeCCCCceeEEEeecCeeccccceeec---chHHHHHHHHHHHH
Q psy429 15 ETFNTPAMYVAIQAAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD---LAGRDLTDYLMKIL 84 (243)
Q Consensus 15 E~~~~~~~~~~~~~~~~~~~~~-------g~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~---~gG~~~~~~l~~ll 84 (243)
...+... .++++. .+|.+.. .....+|||+|.+.|...-|.+|++. ++...- +-...|..+++++-
T Consensus 138 ~~~~~~~-~vmDTg-~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~--GvfEHHT~~l~~~kL~~~l~~l~ 213 (254)
T PF08735_consen 138 GGAGYDE-VVMDTG-PAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY--GVFEHHTGMLTPEKLEEYLERLR 213 (254)
T ss_pred ccCCCCc-eEecCH-HHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE--EEEecccCCCCHHHHHHHHHHHH
Confidence 3333344 777777 7776643 35689999999999999999988764 222222 22445555555443
No 129
>PLN02228 Phosphoinositide phospholipase C
Probab=48.64 E-value=28 Score=33.22 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+++|. .+++||+++.-...+..++++||++|-|.||=
T Consensus 179 ~v~~~I~~~AF~------~s~yPvIlslE~hc~~~qQ~~~a~~~~~~lg~ 222 (567)
T PLN02228 179 KCLNAIKDNAFQ------VSDYPVVITLEDHLPPNLQAQVAKMLTKTFRG 222 (567)
T ss_pred HHHHHHHHhhcc------CCCCCEEEEeecCCCHHHHHHHHHHHHHHHhH
Confidence 556777777763 48899999999988999999999999988874
No 130
>PLN02223 phosphoinositide phospholipase C
Probab=46.87 E-value=32 Score=32.55 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
|.++.|=+|+|. .++++||+++.-...+..++.+||+++-|.||=
T Consensus 179 ~vl~aI~~~AF~-----~s~~yPvIlslE~Hcs~~qQ~~~A~~l~~i~Gd 223 (537)
T PLN02223 179 ECLDAIKEHAFT-----KCRSYPLIITFKDGLKPDLQSKATQMIDQTFGD 223 (537)
T ss_pred HHHHHHHHHhhh-----cCCCCceEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 567777777773 234999999999999999999999999888874
No 131
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=43.38 E-value=12 Score=24.86 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=25.6
Q ss_pred cCCCCChhHHHHHHHHhhhcCCCCeEEeeehhhhccccccC
Q psy429 203 EAPLNPKANREKMTQIMFETFNTPAMYVAIQAVNCCTIKFN 243 (243)
Q Consensus 203 ep~~~~~~~re~~~eilFE~~~vpav~~~~~~~ls~y~~~~ 243 (243)
++.---...|+-|.|++-|. ++..-.=--..+|.||+..|
T Consensus 6 ~S~DPy~DFr~SM~EMI~~~-~i~~~w~~LeeLL~cYL~LN 45 (66)
T TIGR01568 6 ESDDPYEDFRRSMEEMIEER-ELEADWKELEELLACYLDLN 45 (66)
T ss_pred CCCChHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHhC
Confidence 33333467899999999887 43221122346889998877
No 132
>PRK10854 exopolyphosphatase; Provisional
Probab=43.28 E-value=20 Score=33.76 Aligned_cols=39 Identities=13% Similarity=0.050 Sum_probs=29.7
Q ss_pred ceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHH
Q psy429 39 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 79 (243)
Q Consensus 39 ~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~ 79 (243)
.+++|||+|.++|.++-.-+|.+... ...++|.-.+++.
T Consensus 137 ~~~lvvDIGGGStEl~~~~~~~~~~~--~S~~lG~vrl~e~ 175 (513)
T PRK10854 137 GRKLVIDIGGGSTELVIGENFEPILV--ESRRMGCVSFAQL 175 (513)
T ss_pred CCeEEEEeCCCeEEEEEecCCCeeEe--EEEecceeeHHhh
Confidence 35899999999999999888865443 3448887666653
No 133
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=41.76 E-value=63 Score=27.04 Aligned_cols=47 Identities=19% Similarity=0.264 Sum_probs=32.8
Q ss_pred EEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHHHHHHhhcC
Q psy429 42 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 88 (243)
Q Consensus 42 lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l~~ll~~~~ 88 (243)
+-||+|...+.++-+-+|.++.........-.+.+-+.+++.+.+.+
T Consensus 3 lGIDiGtts~K~vl~d~g~il~~~~~~~~~~~~~~~~~l~~~~~~~~ 49 (248)
T TIGR00241 3 LGIDSGSTTTKMVLMEDGKVIGYKWLDTTPVIEETARAILEALKEAG 49 (248)
T ss_pred EEEEcChhheEEEEEcCCEEEEEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 45999999999988877877776655444344566667777775543
No 134
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=41.18 E-value=19 Score=33.79 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=27.4
Q ss_pred CceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHH
Q psy429 38 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 78 (243)
Q Consensus 38 ~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~ 78 (243)
...++|+|+|.++|-++=+-+..+. ....+++|.-.+++
T Consensus 128 ~~~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~G~v~lt~ 166 (492)
T COG0248 128 KGDGLVIDIGGGSTELVLGDNFEIG--LLISLPLGCVRLTE 166 (492)
T ss_pred CCCEEEEEecCCeEEEEEecCCccc--eeEEeecceEEeeh
Confidence 6799999999999999876554443 23556777544443
No 135
>KOG0169|consensus
Probab=40.74 E-value=43 Score=32.83 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 225 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~v 225 (243)
+.++.|=+|+|. .+++||++|.-...+..++.++|++|=|.||=
T Consensus 361 ~vl~aIk~~AF~------~S~YPvIlsLE~Hc~~~qQ~~mA~~~~~ifGd 404 (746)
T KOG0169|consen 361 DVLRAIKKYAFV------TSPYPVILTLENHCSPDQQAKMAQMLKEIFGD 404 (746)
T ss_pred HHHHHHHHhccc------CCCCCEEEEecccCCHHHHHHHHHHHHHHhhh
Confidence 456666667763 47999999999999999999999999998873
No 136
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=32.98 E-value=43 Score=31.12 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhhhhc-CC---------CeEEEecchhHHH-----HhhcC------CceEEEEeCCCCceeEEEeecCee
Q psy429 3 GTTFQGVVRIMFETF-NT---------PAMYVAIQAAVLS-----LYASG------RTTGIVLDSGDGVSHTVPIYEGYA 61 (243)
Q Consensus 3 ~~~r~~~~e~~FE~~-~~---------~~~~~~~~~~~~~-----~~~~g------~~~~lVvd~G~~~t~v~pv~~g~~ 61 (243)
+-.|+.|.+++.++. +. ..--+.++| .+. +++.| +..-++||+|...|+|--+.+|.+
T Consensus 193 epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP-~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhSv~~g~~ 271 (463)
T TIGR01319 193 EAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTP-AAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHSAAAGEL 271 (463)
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCH-HHHHHHHHHHHhccccccCcCCEEEEEcCccccchhhccCCCc
Confidence 457788888776654 11 222334433 222 22333 245799999999999999999966
Q ss_pred c
Q psy429 62 L 62 (243)
Q Consensus 62 ~ 62 (243)
-
T Consensus 272 ~ 272 (463)
T TIGR01319 272 S 272 (463)
T ss_pred c
Confidence 5
No 137
>cd00470 PTPS 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.
Probab=32.75 E-value=56 Score=24.87 Aligned_cols=51 Identities=20% Similarity=0.421 Sum_probs=30.9
Q ss_pred CCCcccCHHHHHHHHHH-HhhccccCCCCCCceEeecCC-C-CChhHHHHHHHHhhhcCC
Q psy429 168 EHGIVTNWDDMEKIWHH-TFYNELRVAPEEHPVLLTEAP-L-NPKANREKMTQIMFETFN 224 (243)
Q Consensus 168 ~~G~i~d~d~~e~l~~~-~~~~~L~~~~~~~pvlltep~-~-~~~~~re~~~eilFE~~~ 224 (243)
+.|++.|+..++++++. +. ..| ||..|-...+ + .....-|.||+.+|+.+.
T Consensus 56 ~~GmviDF~~lk~~l~~~i~-~~l-----DH~~Ln~~~~~~~~~~PTaEniA~~i~~~l~ 109 (135)
T cd00470 56 VTGMVMNLTDLKKAIEEAIM-KPL-----DHKNLDDDVPYFADVVSTTENLAVYIWDNLQ 109 (135)
T ss_pred CCCEEEEHHHHHHHHHHHHH-hhc-----CCceeccccccccCCCCCHHHHHHHHHHHHH
Confidence 36999999999987755 43 222 2333332211 1 112356889999998775
No 138
>KOG0104|consensus
Probab=32.09 E-value=2e+02 Score=28.66 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhhhhcCCCeEEEecchhHHHHhhcC----------CceEEEEeCCCCceeEEEeecC----eec----cc
Q psy429 3 GTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASG----------RTTGIVLDSGDGVSHTVPIYEG----YAL----PH 64 (243)
Q Consensus 3 ~~~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g----------~~~~lVvd~G~~~t~v~pv~~g----~~~----~~ 64 (243)
++.|..+.+.- +-.|..-+++++.. .+++..+| .+.-++-|+|.+.|..+=|.-- .-. +.
T Consensus 171 qaeR~all~Aa-~iagl~vLqLind~-~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~ 248 (902)
T KOG0104|consen 171 QAERRALLQAA-QIAGLNVLQLINDG-TAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQ 248 (902)
T ss_pred HHHHHHHHHHH-HhcCchhhhhhccc-hHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccce
Confidence 45666655532 33456677888888 88877776 3578999999999998765311 111 11
Q ss_pred -----cceeecchHHHHHHHHHHHHhh
Q psy429 65 -----AILRLDLAGRDLTDYLMKILTE 86 (243)
Q Consensus 65 -----~~~~~~~gG~~~~~~l~~ll~~ 86 (243)
...-..+||..++..|+..|..
T Consensus 249 i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 249 IQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred EEEEeeccCCccchHHHHHHHHHHHHH
Confidence 1223468899999999988754
No 139
>KOG1265|consensus
Probab=31.31 E-value=70 Score=32.26 Aligned_cols=43 Identities=23% Similarity=0.311 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCC
Q psy429 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 224 (243)
Q Consensus 176 d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~ 224 (243)
|.+|+|-+.+| ..+++||+++--+..++.++.||++.+-+-||
T Consensus 388 dVleAIaEtAF------kTSpyPVILSfENH~s~kQQaKMa~ycr~IFG 430 (1189)
T KOG1265|consen 388 DVLEAIAETAF------KTSPYPVILSFENHCSPKQQAKMAEYCRDIFG 430 (1189)
T ss_pred HHHHHHHHhhc------cCCCCceEEeecccCCHHHHHHHHHHHHHHHH
Confidence 45566666665 35899999998888899999999998766654
No 140
>COG3732 SrlE Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]
Probab=31.04 E-value=50 Score=28.34 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhcCccccchhHHhhhhheeeeccCCCccccCcCCCCCCCcccCcc
Q psy429 73 GRDLTDYLMKILTERGYSFTTTAEREIVLAALVVDNGSGMCKAGFAGDDAPRAVFPSI 130 (243)
Q Consensus 73 G~~~~~~l~~ll~~~~~~~~~~~~~~~v~~~vViD~Gs~~~K~G~ag~~~P~~i~ps~ 130 (243)
+..+...+.+|...+-.+-....+.+..-.++|||.| .+.|+|. .|+.-+|++
T Consensus 36 ihpVa~~iaeLTgaeaVdGFK~~~Pe~ei~~vvidCg-Gt~RcGv----YP~kripTi 88 (328)
T COG3732 36 IHPVADKIAELTGAEAVDGFKEGPPEEEIGCVVIDCG-GTLRCGV----YPKKRIPTI 88 (328)
T ss_pred CCcHHHHHHHhhcchhhcccccCCCcceeEEEEEecC-Ceeeecc----ccccCCcee
Confidence 3456666777776654443322233334468999998 4789885 466666664
No 141
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=30.71 E-value=89 Score=26.13 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=33.4
Q ss_pred ceEEEEeCCCCceeEEEeecCeecccc-ceeecchHHHHHHHHHHHHh
Q psy429 39 TTGIVLDSGDGVSHTVPIYEGYALPHA-ILRLDLAGRDLTDYLMKILT 85 (243)
Q Consensus 39 ~~~lVvd~G~~~t~v~pv~~g~~~~~~-~~~~~~gG~~~~~~l~~ll~ 85 (243)
....|||+|.+-|.++-+-+|.+..-. ......|+....+.+.+.|.
T Consensus 91 ~~~~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~ 138 (248)
T TIGR00241 91 EARGVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRLG 138 (248)
T ss_pred CCCEEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHHcC
Confidence 345699999999999999999876432 34467777666665555543
No 142
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=30.55 E-value=2.1e+02 Score=22.35 Aligned_cols=53 Identities=15% Similarity=0.359 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEe
Q psy429 175 WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYV 230 (243)
Q Consensus 175 ~d~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~ 230 (243)
++.++..+...+.+. .+.....+.+.- -.++...-+++|+-+||.|.+|-+-+
T Consensus 66 ~~~l~~~l~~~l~~~--~~~~~~~l~iyF-G~~~~~~~~~lAr~lFe~F~~PlL~v 118 (153)
T PF14401_consen 66 LEELDPLLQKALAKL--IKSERFELSIYF-GQTPDPRLERLARQLFERFPCPLLEV 118 (153)
T ss_pred HHHHhHHHHHHHhcc--cCCceEEEEEEE-CCCCCHHHHHHHHHHHHhCCCceEEE
Confidence 445566666666432 222223333222 33477788899999999999998754
No 143
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=30.00 E-value=1.7e+02 Score=25.56 Aligned_cols=83 Identities=17% Similarity=0.167 Sum_probs=55.0
Q ss_pred HHHHHHHHhhhhcCCCeEEEecchhHHHHhhcCC-----ceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHH
Q psy429 5 TFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 79 (243)
Q Consensus 5 ~r~~~~e~~FE~~~~~~~~~~~~~~~~~~~~~g~-----~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~ 79 (243)
+.+++++-+=+.+++|.---...+ -++....=. ..-.++|+|..+|...=|-....+. ...+.=+|+.+|..
T Consensus 96 ~M~~iA~~l~~~lgv~V~igGvEA-emAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~--~iHlAGAG~mVTml 172 (332)
T PF08841_consen 96 QMQMIADELEEELGVPVEIGGVEA-EMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVT--AIHLAGAGNMVTML 172 (332)
T ss_dssp TCHHHHHHHHHHHTSEEEEECEHH-HHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EE--EEEEE-SHHHHHHH
T ss_pred cHHHHHHHHHHHHCCceEEccccH-HHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEE--EEEecCCchhhHHH
Confidence 357889999999999999998888 887775533 3456899999999976553332221 23345568888888
Q ss_pred HHHHHhhcCcc
Q psy429 80 LMKILTERGYS 90 (243)
Q Consensus 80 l~~ll~~~~~~ 90 (243)
+..-|-....+
T Consensus 173 I~sELGl~d~~ 183 (332)
T PF08841_consen 173 INSELGLEDRE 183 (332)
T ss_dssp HHHHCT-S-HH
T ss_pred HHHhhCCCCHH
Confidence 87666544333
No 144
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=28.97 E-value=1.3e+02 Score=25.38 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=12.6
Q ss_pred CceEEEEeCCCCceeE
Q psy429 38 RTTGIVLDSGDGVSHT 53 (243)
Q Consensus 38 ~~~~lVvd~G~~~t~v 53 (243)
....+|||.|...|-=
T Consensus 115 ~~~~lViD~GTA~Tid 130 (243)
T TIGR00671 115 GFNVVVVDAGTALTID 130 (243)
T ss_pred CCCEEEEEcCCceEEE
Confidence 4589999999986644
No 145
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=28.70 E-value=1.2e+02 Score=22.89 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhccccCCCCCCceEeecCCCCChhHHHHHHHHhhhcCC
Q psy429 177 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 224 (243)
Q Consensus 177 ~~e~l~~~~~~~~L~~~~~~~pvlltep~~~~~~~re~~~eilFE~~~ 224 (243)
.++.+-++++. . ...+|+|.-........++++++++-|.|+
T Consensus 74 vL~~i~~fl~~-----~-p~e~VIl~l~~~~~~~~~~~l~~~l~~~~g 115 (135)
T smart00148 74 VLEAIKDFAFV-----T-SPYPVILSLENHCSPDQQAKMAQMFKEIFG 115 (135)
T ss_pred HHHHHHHHHHh-----C-CCCcEEEeehhhCCHHHHHHHHHHHHHHHh
Confidence 34555555442 3 456788888777777888899999888886
No 146
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=27.90 E-value=54 Score=29.24 Aligned_cols=22 Identities=9% Similarity=0.210 Sum_probs=18.3
Q ss_pred CCCCCcccCHHHHHHHHHHHhh
Q psy429 166 PIEHGIVTNWDDMEKIWHHTFY 187 (243)
Q Consensus 166 p~~~G~i~d~d~~e~l~~~~~~ 187 (243)
-+++|.|.|.+.+.+.++.++.
T Consensus 37 gi~~G~I~d~~~~~~~i~~al~ 58 (371)
T TIGR01174 37 GIKKGVINDIEAAVGSIQRAIE 58 (371)
T ss_pred CccCcEEEcHHHHHHHHHHHHH
Confidence 4789999999998887777774
No 147
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=26.87 E-value=1.8e+02 Score=25.39 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=34.0
Q ss_pred eEEEEeCCCCceeEEEeecCeeccccceeecchHH---HHHHHHHHHHhhcCc
Q psy429 40 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR---DLTDYLMKILTERGY 89 (243)
Q Consensus 40 ~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~---~~~~~l~~ll~~~~~ 89 (243)
.-+=||+|...|.++-+-+|..+. ....+.|++ ...+.|.+++.+.+.
T Consensus 33 ~~~GIDiGStt~K~Vlld~~~i~~--~~~~~tg~~~~~~a~~~l~~~l~~~g~ 83 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVCDGELYG--YNSMRTGNNSPDSAKNALQGIMDKIGM 83 (293)
T ss_pred EEEEEEeCchhEEEEEEeCCEEEE--EEeecCCCCHHHHHHHHHHHHHHHcCC
Confidence 457899999999998887775443 344566654 566677777776654
No 148
>PF03612 EIIBC-GUT_N: Sorbitol phosphotransferase enzyme II N-terminus; InterPro: IPR011618 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria. Escherichia coli consists of IIA protein, a IIC protein and a IIBC protein. This entry represents the N-terminal conserved region of the IIBC component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=26.60 E-value=73 Score=25.68 Aligned_cols=52 Identities=21% Similarity=0.377 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhcCccccchhHHhhhhheeeeccCCCccccCcCCCCCCCcccCcc
Q psy429 74 RDLTDYLMKILTERGYSFTTTAEREIVLAALVVDNGSGMCKAGFAGDDAPRAVFPSI 130 (243)
Q Consensus 74 ~~~~~~l~~ll~~~~~~~~~~~~~~~v~~~vViD~Gs~~~K~G~ag~~~P~~i~ps~ 130 (243)
..+.+.+.+|.--.-+|=......+-....+|||.| .+.|||. .|+--||++
T Consensus 36 ~pia~kIaelTG~eaVdGFkt~vPdeEi~~vVIDCG-GTlRCGi----YPkK~IpTI 87 (183)
T PF03612_consen 36 PPIADKIAELTGAEAVDGFKTSVPDEEIACVVIDCG-GTLRCGI----YPKKRIPTI 87 (183)
T ss_pred CHHHHHHHHHHCCeecCCccCCCChHHeEEEEEecC-Cceeecc----ccccCCcee
Confidence 467777777776554442211111223357999999 5789985 577777774
No 149
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=26.10 E-value=69 Score=21.64 Aligned_cols=33 Identities=12% Similarity=0.439 Sum_probs=24.3
Q ss_pred ccCHHHHHHHHHHHhhccccCCCCCCceEeecCC
Q psy429 172 VTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 205 (243)
Q Consensus 172 i~d~d~~e~l~~~~~~~~L~~~~~~~pvlltep~ 205 (243)
.+--+.+..+|+|+-.+.| .+|++...+.+...
T Consensus 20 ~sr~~v~~~lw~YIk~~~L-~dp~~k~~I~cD~~ 52 (76)
T PF02201_consen 20 LSRSEVVKRLWQYIKENNL-QDPKDKRIIICDEK 52 (76)
T ss_dssp EEHHHHHHHHHHHHHHTTS-BESSSTTEEE-TTS
T ss_pred CCHHHHHHHHHHHHHHhcC-CCcccCceEecCHH
Confidence 4556789999999987666 47788888876643
No 150
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=26.03 E-value=61 Score=27.62 Aligned_cols=56 Identities=16% Similarity=0.097 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhhhhcCCCeEEEecchh------------------HHHHhhcC---CceEEEEeCCCCceeEEEeecC
Q psy429 3 GTTFQGVVRIMFETFNTPAMYVAIQAA------------------VLSLYASG---RTTGIVLDSGDGVSHTVPIYEG 59 (243)
Q Consensus 3 ~~~r~~~~e~~FE~~~~~~~~~~~~~~------------------~~~~~~~g---~~~~lVvd~G~~~t~v~pv~~g 59 (243)
+...+.+...+.|.|++...+...... .+++++.. ...++|||.|.+.|- .-|-+|
T Consensus 65 p~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~~p~elG~DR~~n~vaA~~~~~~~~vVVD~GTA~Ti-d~v~~~ 141 (251)
T COG1521 65 PPLGIFLEAVLKEYFKVKPLVVISPKQLLGIRVLYDNPEELGADRIANAVAAYHKYGKAVVVVDFGTATTI-DLVDEG 141 (251)
T ss_pred ccHHHHHHHHHHHHhccCceeeechhhccCCcccCCChhhhcHHHHHHHHHHHHHcCCcEEEEEcCCeEEE-EEEcCC
Confidence 345667777888888888853322210 22333332 345899999988654 444343
No 151
>PRK13329 pantothenate kinase; Reviewed
Probab=25.74 E-value=62 Score=27.38 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=13.8
Q ss_pred hcCCceEEEEeCCCCceeE
Q psy429 35 ASGRTTGIVLDSGDGVSHT 53 (243)
Q Consensus 35 ~~g~~~~lVvd~G~~~t~v 53 (243)
.......+|||.|...|.=
T Consensus 115 ~~~~~~~lViD~GTA~TiD 133 (249)
T PRK13329 115 HGPARPCLVVMVGTAVTVD 133 (249)
T ss_pred HhcCCCEEEEECCCceeEE
Confidence 3335679999999987643
No 152
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=25.68 E-value=1.2e+02 Score=23.97 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=29.0
Q ss_pred CCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeeh
Q psy429 195 EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 233 (243)
Q Consensus 195 ~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~ 233 (243)
..+|++++-|...-++.+|.+..+ -|+|++|.++.+++
T Consensus 35 AkrPLlivGp~~~dee~~E~~vKi-~ekfnipivaTa~~ 72 (170)
T COG1880 35 AKRPLLIVGPLALDEELLELAVKI-IEKFNIPIVATASS 72 (170)
T ss_pred cCCceEEecccccCHHHHHHHHHH-HHhcCCceEecchh
Confidence 567999999888877777766654 58899998876654
No 153
>KOG0100|consensus
Probab=25.36 E-value=2.2e+02 Score=26.32 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=40.9
Q ss_pred eEEEecchhHHHHhhcC------CceEEEEeCCCCceeEE--EeecCe-eccccceeecchHHHHHHHHHHH
Q psy429 21 AMYVAIQAAVLSLYASG------RTTGIVLDSGDGVSHTV--PIYEGY-ALPHAILRLDLAGRDLTDYLMKI 83 (243)
Q Consensus 21 ~~~~~~~~~~~~~~~~g------~~~~lVvd~G~~~t~v~--pv~~g~-~~~~~~~~~~~gG~~~~~~l~~l 83 (243)
-+-+++.| .+++.|+| ..+-+|.|.|...-.|. .|-.|. -......--.+||.+.++...+.
T Consensus 202 V~RIiNeP-TaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~ 272 (663)
T KOG0100|consen 202 VVRIINEP-TAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEY 272 (663)
T ss_pred EEEeecCc-cHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHH
Confidence 35567777 77777776 46899999999987665 455552 12223334578998777655544
No 154
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=25.33 E-value=2.3e+02 Score=25.81 Aligned_cols=52 Identities=17% Similarity=0.131 Sum_probs=39.1
Q ss_pred ceEEEEeCCCCceeEEEeecCeeccccceeecchHHHHHHHHHHHHhhcCcc
Q psy429 39 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 90 (243)
Q Consensus 39 ~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~~~~~~l~~ll~~~~~~ 90 (243)
...+=||+|...|.++=+-|+..+.........|=....+.+++.|.+-+..
T Consensus 135 ~~~LGID~GSTtTK~VLm~d~~~I~~~~~~~t~g~p~~~~~l~~~le~l~~~ 186 (396)
T COG1924 135 MYTLGIDSGSTTTKAVLMEDGKEILYGFYVSTKGRPIAEKALKEALEELGEK 186 (396)
T ss_pred cEEEEEecCCcceeEEEEeCCCeEEEEEEEcCCCChhHHHHHHHHHHHcccC
Confidence 4567799999999999999999777776666665444566777777665554
No 155
>PRK00976 hypothetical protein; Provisional
Probab=24.98 E-value=1.1e+02 Score=27.07 Aligned_cols=34 Identities=18% Similarity=0.048 Sum_probs=28.4
Q ss_pred HHHHhhcCCceEEEEeCCCCceeEEEeecCeeccc
Q psy429 30 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPH 64 (243)
Q Consensus 30 ~~~~~~~g~~~~lVvd~G~~~t~v~pv~~g~~~~~ 64 (243)
.++.+-.+..+-+|+|+|+ .|..+.|-+|+++-.
T Consensus 140 ~~a~~~~~~~~fi~~diss-ntv~~~V~~gkIvgg 173 (326)
T PRK00976 140 YNAYKLFGFENFIVSDISS-NTVTLLVKDGKIVGA 173 (326)
T ss_pred HHHHhhcCCCcEEEEeccc-cEEEEEEECCEEEcc
Confidence 3455557889999999999 999999999988765
No 156
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=24.64 E-value=2.1e+02 Score=19.55 Aligned_cols=46 Identities=13% Similarity=0.005 Sum_probs=26.7
Q ss_pred EEEEeCCCCceeEEEe-ecCeeccccceeecchHHHHHHHHHHHHhh
Q psy429 41 GIVLDSGDGVSHTVPI-YEGYALPHAILRLDLAGRDLTDYLMKILTE 86 (243)
Q Consensus 41 ~lVvd~G~~~t~v~pv-~~g~~~~~~~~~~~~gG~~~~~~l~~ll~~ 86 (243)
-+.+|+|...+.+.=+ -+|..+........-+...+-+.+.+++.+
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~ 49 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLIKK 49 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEecCcchHHHHHHHHHHH
Confidence 4789999777766655 356655442222222445556666666654
No 157
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=23.55 E-value=69 Score=23.62 Aligned_cols=50 Identities=24% Similarity=0.493 Sum_probs=28.2
Q ss_pred CCCcccCHHHHHHHHHHHhhccccCCCCCCceEeec-CCCCC--hhHHHHHHHHhhhcC
Q psy429 168 EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE-APLNP--KANREKMTQIMFETF 223 (243)
Q Consensus 168 ~~G~i~d~d~~e~l~~~~~~~~L~~~~~~~pvllte-p~~~~--~~~re~~~eilFE~~ 223 (243)
+.|++.|+..++++++.+.. .+ ||..|=.+ |.+.. ...-|.+|+.+|+.+
T Consensus 42 ~~g~v~DF~~lk~~~~~i~~-~l-----Dh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l 94 (123)
T PF01242_consen 42 EDGMVVDFGDLKKIIKEIDD-QL-----DHKFLNEDDPEFDDINNPTAENLARWIFERL 94 (123)
T ss_dssp TTSSSS-HHHHHHHHHHHHH-HH-----TTEEGGHHSGCGCSSTS--HHHHHHHHHHHH
T ss_pred CCCEEEEHHHHHHHHHHHHH-Hh-----CcccccCCChhhhccCCCCHHHHHHHHHHHH
Confidence 68999999999999887643 22 23333101 22211 245677777777754
No 158
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=23.46 E-value=1.4e+02 Score=26.77 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=28.0
Q ss_pred cCCceEEEEeCCCCceeEEEeecCeeccccceee
Q psy429 36 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 69 (243)
Q Consensus 36 ~g~~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~ 69 (243)
+...+=++||+|+..|.++.|-+|.++..-.-.+
T Consensus 151 y~~~nfIlvEiG~~yta~iaV~~GkIVDGiggt~ 184 (343)
T PF07318_consen 151 YREVNFILVEIGSGYTAAIAVKNGKIVDGIGGTI 184 (343)
T ss_pred cccceEEEEEccCCceEEEEEECCeEEccccccc
Confidence 4456999999999999999999999988733333
No 159
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=21.73 E-value=53 Score=26.70 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=15.6
Q ss_pred CceEEEEeCCCCceeEEEeecCe
Q psy429 38 RTTGIVLDSGDGVSHTVPIYEGY 60 (243)
Q Consensus 38 ~~~~lVvd~G~~~t~v~pv~~g~ 60 (243)
...++|||.|...|-=+=--+|.
T Consensus 119 ~~~~lViD~GTA~Tid~v~~~g~ 141 (206)
T PF03309_consen 119 GQPCLVIDAGTATTIDVVDADGQ 141 (206)
T ss_dssp TSSEEEEEESSEEEEEEEETTSE
T ss_pred CCCEEEEEcCCeEEEEEEcCCCe
Confidence 68999999998865443222443
No 160
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=21.18 E-value=1.1e+02 Score=28.52 Aligned_cols=52 Identities=25% Similarity=0.422 Sum_probs=40.5
Q ss_pred ceEEEEeCCCCceeEEEeecCeeccccceeecchHH-----------HHHHHHHHHHhhcCcccc
Q psy429 39 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR-----------DLTDYLMKILTERGYSFT 92 (243)
Q Consensus 39 ~~~lVvd~G~~~t~v~pv~~g~~~~~~~~~~~~gG~-----------~~~~~l~~ll~~~~~~~~ 92 (243)
.+-+=+|+|...|.++=.-+|.++..++ +++||| .+...+++++.+.+.++.
T Consensus 143 ~~V~NiDIGGGTtN~avf~~G~v~~T~c--l~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~~ 205 (473)
T PF06277_consen 143 TVVANIDIGGGTTNIAVFDNGEVIDTAC--LDIGGRLIEFDPDGRITYISPPIQRLLEELGLELS 205 (473)
T ss_pred CeEEEEEeCCCceeEEEEECCEEEEEEE--EeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCCC
Confidence 4566689999999999999999987754 588888 455667777777766653
No 161
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=21.02 E-value=1.7e+02 Score=25.41 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=33.8
Q ss_pred CCCceEeecCCCCChhHHHHHHHHhhhcCCCCeEEeeehh
Q psy429 195 EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA 234 (243)
Q Consensus 195 ~~~pvlltep~~~~~~~re~~~eilFE~~~vpav~~~~~~ 234 (243)
.|.-+++|||.-.....-+++.|++ |.|++|..-+.+..
T Consensus 186 aD~ai~VTEPTp~glhD~kr~~el~-~~f~ip~~iViNr~ 224 (284)
T COG1149 186 ADLAILVTEPTPFGLHDLKRALELV-EHFGIPTGIVINRY 224 (284)
T ss_pred CCEEEEEecCCccchhHHHHHHHHH-HHhCCceEEEEecC
Confidence 5889999999999988888888865 77999999888765
No 162
>KOG0103|consensus
Probab=20.80 E-value=2.4e+02 Score=27.69 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=44.2
Q ss_pred CCCeEEEecchhHHHHhhcCC------------ceEEEEeCCCCceeEEEe--ecCee-ccccceeecchHHHHHHHHHH
Q psy429 18 NTPAMYVAIQAAVLSLYASGR------------TTGIVLDSGDGVSHTVPI--YEGYA-LPHAILRLDLAGRDLTDYLMK 82 (243)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~------------~~~lVvd~G~~~t~v~pv--~~g~~-~~~~~~~~~~gG~~~~~~l~~ 82 (243)
++.-+-++..- .+++.++|. .+-+-||+||+.++++-. -.|.. +.....--.+||++.+..|.+
T Consensus 164 gLn~lrLmnd~-TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~ 242 (727)
T KOG0103|consen 164 GLNPLRLMNDT-TATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALID 242 (727)
T ss_pred Cccceeeeecc-hHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHHH
Confidence 44445556665 666666662 357889999999998733 33421 222333447999999998888
Q ss_pred HHhh
Q psy429 83 ILTE 86 (243)
Q Consensus 83 ll~~ 86 (243)
...+
T Consensus 243 hfa~ 246 (727)
T KOG0103|consen 243 HFAK 246 (727)
T ss_pred HHHH
Confidence 7754
No 163
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=20.36 E-value=1.3e+02 Score=23.41 Aligned_cols=29 Identities=34% Similarity=0.493 Sum_probs=23.8
Q ss_pred ecchHHHHHHHHHHHHhhcCccccchhHHhhhhheeeeccCCC
Q psy429 69 LDLAGRDLTDYLMKILTERGYSFTTTAEREIVLAALVVDNGSG 111 (243)
Q Consensus 69 ~~~gG~~~~~~l~~ll~~~~~~~~~~~~~~~v~~~vViD~Gs~ 111 (243)
++-+|-.+.+.|++.|.+++++ |+|+|++
T Consensus 7 sDhaG~~lK~~l~~~L~~~g~e--------------V~D~G~~ 35 (148)
T PRK05571 7 SDHAGFELKEEIIEHLEELGHE--------------VIDLGPD 35 (148)
T ss_pred eCCchHHHHHHHHHHHHHCCCE--------------EEEcCCC
Confidence 5677889999999999988765 6888875
Done!