RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy429
(243 letters)
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional.
Length = 376
Score = 291 bits (745), Expect = 2e-98
Identities = 131/135 (97%), Positives = 133/135 (98%)
Query: 101 LAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 160
+ ALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQSKRGI
Sbjct: 6 VQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGI 65
Query: 161 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 220
LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 221 ETFNTPAMYVAIQAV 235
ETFNTPAMYVAIQAV
Sbjct: 126 ETFNTPAMYVAIQAV 140
Score = 179 bits (456), Expect = 8e-55
Identities = 86/94 (91%), Positives = 91/94 (96%), Gaps = 1/94 (1%)
Query: 7 QGVVRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 66
+ + +IMFETFNTPAMYVAIQA VLSLYASGRTTGIV+DSGDGVSHTVPIYEGYALPHAI
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQA-VLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAI 176
Query: 67 LRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 100
LRLDLAGRDLTDY+MKILTERGYSFTTTAEREIV
Sbjct: 177 LRLDLAGRDLTDYMMKILTERGYSFTTTAEREIV 210
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional.
Length = 378
Score = 264 bits (677), Expect = 7e-88
Identities = 120/133 (90%), Positives = 124/133 (93%)
Query: 103 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 162
A VVDNGSGM KAGFAGDDAPR VFPSIVGRP++ G+MVGM +KD YVGDEAQ KRGILT
Sbjct: 8 AAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILT 67
Query: 163 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 222
LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 223 FNTPAMYVAIQAV 235
N PAMYVAIQAV
Sbjct: 128 HNVPAMYVAIQAV 140
Score = 166 bits (423), Expect = 7e-50
Identities = 77/94 (81%), Positives = 86/94 (91%), Gaps = 1/94 (1%)
Query: 7 QGVVRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 66
+ + +IMFET N PAMYVAIQA VLSLYASGRTTGIVLDSGDGVSHTVPIYEGY+LPHAI
Sbjct: 118 EKMTQIMFETHNVPAMYVAIQA-VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAI 176
Query: 67 LRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 100
RLD+AGRDLT+Y+MKIL ERG +FTTTAE+EIV
Sbjct: 177 HRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIV 210
>gnl|CDD|214592 smart00268, ACTIN, Actin. ACTIN subfamily of
ACTIN/mreB/sugarkinase/Hsp70 superfamily.
Length = 373
Score = 243 bits (623), Expect = 9e-80
Identities = 97/134 (72%), Positives = 112/134 (83%), Gaps = 1/134 (0%)
Query: 102 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 161
A+V+DNGSG KAGFAG+D P+ VFPSIVGRP+ MVG KD +VGDEAQ KRG L
Sbjct: 2 PAIVIDNGSGTIKAGFAGEDFPQVVFPSIVGRPKDGKGMVG-DAKDIFVGDEAQEKRGGL 60
Query: 162 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 221
LKYPIE+GIV NWDDMEKIW +TF+NELRV PEEHPVLLTE P+NPK+NREK+ +IMFE
Sbjct: 61 ELKYPIENGIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFE 120
Query: 222 TFNTPAMYVAIQAV 235
TFN PA+Y+AIQAV
Sbjct: 121 TFNFPALYIAIQAV 134
Score = 157 bits (399), Expect = 3e-46
Identities = 64/90 (71%), Positives = 79/90 (87%), Gaps = 1/90 (1%)
Query: 11 RIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 70
IMFETFN PA+Y+AIQA VLSLYASGRTTG+V+DSGDGV+H VP+ +GY LPHAI R+D
Sbjct: 116 EIMFETFNFPALYIAIQA-VLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRID 174
Query: 71 LAGRDLTDYLMKILTERGYSFTTTAEREIV 100
+AGRD+TDYL ++L+ERGY F ++AE EIV
Sbjct: 175 IAGRDITDYLKELLSERGYQFNSSAEFEIV 204
>gnl|CDD|200935 pfam00022, Actin, Actin.
Length = 367
Score = 239 bits (613), Expect = 3e-78
Identities = 95/133 (71%), Positives = 106/133 (79%), Gaps = 5/133 (3%)
Query: 103 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 162
ALV+DNGSG KAGFAG+DAPRAV PS+VGRPR +GVMV YVGDEA SKR L
Sbjct: 5 ALVIDNGSGTTKAGFAGEDAPRAVIPSVVGRPRGRGVMV-----KYYVGDEALSKRPGLE 59
Query: 163 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 222
++YPIE GIV NWD MEKIW HTF+ ELRV PEEHP+LLTE PLNP ANREK T+IMFET
Sbjct: 60 VRYPIEDGIVENWDAMEKIWEHTFFEELRVDPEEHPLLLTEPPLNPPANREKATEIMFET 119
Query: 223 FNTPAMYVAIQAV 235
F PA+Y+A QAV
Sbjct: 120 FGVPALYLAKQAV 132
Score = 150 bits (380), Expect = 1e-43
Identities = 60/91 (65%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Query: 10 VRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRL 69
IMFETF PA+Y+A QA VLS YASGRTTG+V+DSG GV+ VP+YEGY L AI R
Sbjct: 113 TEIMFETFGVPALYLAKQA-VLSAYASGRTTGLVVDSGAGVTSVVPVYEGYVLQKAIRRS 171
Query: 70 DLAGRDLTDYLMKILTERGYSFTTTAEREIV 100
DLAG DLTDYL K+L+ R YSF T AE E+V
Sbjct: 172 DLAGDDLTDYLRKLLSSRTYSFNTYAEEEVV 202
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 198 bits (505), Expect = 2e-61
Identities = 83/138 (60%), Positives = 106/138 (76%), Gaps = 5/138 (3%)
Query: 103 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR-HQGVMVGMGQKDSYVGDEAQSKRGI- 160
+V+DNGSG KAGFAG+D P VFPSIVGR R VM +KD+YVG+EAQ+ R
Sbjct: 8 TIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNS 67
Query: 161 -LTLKYPIEHGIVTNWDDMEKIWHHTFYNE--LRVAPEEHPVLLTEAPLNPKANREKMTQ 217
L L+YPIE+GI+ NWD ME+IW +TF+N+ L +PEEHP+LLTE PLNP +NREK+T+
Sbjct: 68 LLELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITE 127
Query: 218 IMFETFNTPAMYVAIQAV 235
++FET N PA+Y+AIQAV
Sbjct: 128 LLFETLNVPALYLAIQAV 145
Score = 111 bits (279), Expect = 2e-28
Identities = 51/99 (51%), Positives = 69/99 (69%), Gaps = 11/99 (11%)
Query: 12 IMFETFNTPAMYVAIQAAVLSLYASGRT--TGIVLDSGDGVSHTVPIYEGYALPHAILRL 69
++FET N PA+Y+AIQA VLSLYASG + TG+V+DSGD V+H +P+ +G LP A+ R+
Sbjct: 128 LLFETLNVPALYLAIQA-VLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRI 186
Query: 70 DLAGRDLTDYLMKILTE-----RGYSFTTT---AEREIV 100
D+ GRD+TDYL K+L E RGY+ + EIV
Sbjct: 187 DIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIV 225
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional.
Length = 375
Score = 188 bits (479), Expect = 3e-58
Identities = 78/133 (58%), Positives = 105/133 (78%)
Query: 103 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 162
A+V+DNGSG CK G AGDDAP + FP+IVGR + + K+ YVG+EAQ+KRG+L
Sbjct: 7 AVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLA 66
Query: 163 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 222
+K PI++GI+ +WDD+E IWHH FYNEL ++PE+ PV +T+AP+N K NRE+MTQIMFET
Sbjct: 67 IKEPIQNGIINSWDDIEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFET 126
Query: 223 FNTPAMYVAIQAV 235
FNTP +Y++ +AV
Sbjct: 127 FNTPCLYISNEAV 139
Score = 114 bits (285), Expect = 8e-30
Identities = 52/92 (56%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
Query: 9 VVRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILR 68
+ +IMFETFNTP +Y++ AVLSLY SG+T G+V+DSG+GV+H VP++EG+ +P AI +
Sbjct: 119 MTQIMFETFNTPCLYIS-NEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITK 177
Query: 69 LDLAGRDLTDYLMKILTERGYSFTTTAEREIV 100
++LAGR TDYL +IL E GYS T +R IV
Sbjct: 178 INLAGRLCTDYLTQILQELGYSLTEPHQRIIV 209
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional.
Length = 380
Score = 186 bits (473), Expect = 3e-57
Identities = 72/132 (54%), Positives = 103/132 (78%), Gaps = 1/132 (0%)
Query: 104 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 163
+++DNG+G KAGFAG+D P VFPS VGRP+++ VM G + + +VG++A+ RG+L +
Sbjct: 15 IIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKV 74
Query: 164 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 223
YPI HGI+ NW+DME IW H YN +++ EEHPVLLTEAPLNP+ N+EK+ ++ FETF
Sbjct: 75 TYPINHGIIENWNDMENIWIHV-YNSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETF 133
Query: 224 NTPAMYVAIQAV 235
N PA++++IQA+
Sbjct: 134 NVPALFISIQAI 145
Score = 126 bits (317), Expect = 3e-34
Identities = 49/92 (53%), Positives = 68/92 (73%), Gaps = 1/92 (1%)
Query: 9 VVRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILR 68
+ + FETFN PA++++IQA +LSLY+ G+T G VLD GDGV H V IYEGY++ + I R
Sbjct: 125 IAEVFFETFNVPALFISIQA-ILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITR 183
Query: 69 LDLAGRDLTDYLMKILTERGYSFTTTAEREIV 100
D+AGRD+T YL +L + G+ F T+AE E+V
Sbjct: 184 TDVAGRDITTYLGYLLRKNGHLFNTSAEMEVV 215
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional.
Length = 414
Score = 160 bits (407), Expect = 4e-47
Identities = 60/136 (44%), Positives = 81/136 (59%), Gaps = 3/136 (2%)
Query: 103 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV---GMGQKDSYVGDEAQSKRG 159
+V+DNG+G K G+AG+ P + P+++ Q G D Y+GDEA +
Sbjct: 6 VVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASK 65
Query: 160 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 219
TL YP++HGIV +WD MEK W + LR PEEH +LTE P+NP NRE +IM
Sbjct: 66 SYTLTYPMKHGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIM 125
Query: 220 FETFNTPAMYVAIQAV 235
FETFN +Y+A+QAV
Sbjct: 126 FETFNVKGLYIAVQAV 141
Score = 101 bits (253), Expect = 6e-25
Identities = 41/87 (47%), Positives = 59/87 (67%), Gaps = 11/87 (12%)
Query: 12 IMFETFNTPAMYVAIQAAVLSLYAS----------GRTTGIVLDSGDGVSHTVPIYEGYA 61
IMFETFN +Y+A+QA VL+L AS G TG V+DSGDGV+H +P+ +GY
Sbjct: 124 IMFETFNVKGLYIAVQA-VLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYV 182
Query: 62 LPHAILRLDLAGRDLTDYLMKILTERG 88
+ +I + LAGRD+T+++ ++L ERG
Sbjct: 183 IGSSIKHIPLAGRDITNFIQQMLRERG 209
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 52.2 bits (125), Expect = 2e-08
Identities = 35/145 (24%), Positives = 45/145 (31%), Gaps = 48/145 (33%)
Query: 104 LVVDNGSGMCKAGFAGDDA---PRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 160
L +D GS KAG A D P + P+ VGRP
Sbjct: 1 LGIDIGSTSTKAGVADLDGEILPEEIVPTPVGRP-------------------------- 34
Query: 161 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE-HPVLLTEAPLNPKANREKMTQI- 218
G VT+ D++E+ LR E V +TE PK NRE +
Sbjct: 35 ---------GAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPN 85
Query: 219 --------MFETFNTPAMYVAIQAV 235
E + V AV
Sbjct: 86 LLLIPLALALEDLGGVPVAVVNDAV 110
Score = 39.9 bits (93), Expect = 3e-04
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 10 VRIMFETFNTPAMYVAIQAAVLSLYASGRT-----TGIVLDSGDGVSHTVPIYEGYALPH 64
+ + E + V A V + A G T +V+D G G + + +G
Sbjct: 91 LALALEDLGGVPVAVVNDA-VAAALAEGLFGKEEDTVLVVDLGTGTTGIAIVEDGKGGVG 149
Query: 65 AILRLDLA 72
A L +A
Sbjct: 150 AAGELGIA 157
>gnl|CDD|216635 pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide
pyrophosphatase. This family consists of
phosphodiesterases, including human plasma-cell membrane
glycoprotein PC-1 / alkaline phosphodiesterase i /
nucleotide pyrophosphatase (nppase). These enzymes
catalyze the cleavage of phosphodiester and
phosphosulfate bonds in NAD, deoxynucleotides and
nucleotide sugars. Also in this family is ATX an
autotaxin, tumour cell motility-stimulating protein
which exhibits type I phosphodiesterases activity. The
alignment encompasses the active site. Also present with
in this family is 60-kDa Ca2+-ATPase form F. odoratum.
Length = 342
Score = 30.8 bits (70), Expect = 0.58
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 160 ILTLKYPIEHGIVTN-WDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANREKMT 216
I+T YP HGIV N W D +++ TF+++L + + P+ +T KA
Sbjct: 52 IVTGLYPGSHGIVGNTWYDPKRLKESTFWDQLPESGDGDPKPIWVTAKKQGLKAA----- 106
Query: 217 QIMFETFNTPAMYVAIQAVNC 237
P + A
Sbjct: 107 -----ALFWPGSHAAKPGYGP 122
>gnl|CDD|234507 TIGR04222, near_uncomplex, TIGR04222 domain. The majority of the
proteins with a domain as described by this model have
an extreme C-terminal sequence that is consists of
extremely low-complexity sequence, rich in Ser or in Gly
interspersed with Cys. That C-terminal region resembles
ribosomal natural product precursors, although there is
no evidence that C-terminal regions of these proteins
undergo any modification or have any such function.
Length = 229
Score = 30.4 bits (69), Expect = 0.64
Identities = 17/95 (17%), Positives = 25/95 (26%), Gaps = 13/95 (13%)
Query: 25 AIQAAVLSLYASGR----TTGIVLDSGDGVSHTVPIYE---------GYALPHAILRLDL 71
+ A+ +L GR G V G + + P+ A LRL
Sbjct: 49 VVDTALAALVRRGRLRVGRGGRVRVVGPAPAGSDPVERAVLDALAAAAGQGSVARLRLAA 108
Query: 72 AGRDLTDYLMKILTERGYSFTTTAEREIVLAALVV 106
A + L RG R +
Sbjct: 109 AVGPAVRAIRDRLVRRGLLLPPGQRRAARRLGRLP 143
>gnl|CDD|237798 PRK14714, PRK14714, DNA polymerase II large subunit; Provisional.
Length = 1337
Score = 30.0 bits (68), Expect = 1.3
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 77 TDYLMKILTERGYSFTTTAEREIVLAALVVDNGSGMCKAGF---AGDDAP 123
D+L++ TERG S T T + A LV D G K F GD P
Sbjct: 993 PDHLIRFETERGRSLTVTPDH----AMLVWDGGYLEKKRAFEVKEGDAVP 1038
>gnl|CDD|130700 TIGR01639, P_fal_TIGR01639, Plasmodium falciparum uncharacterized
domain TIGR01639. This model represents a conserved
sequence region of about 60 amino acids found in over 40
predicted proteins of Plasmodium falciparum. It is not
found elsewhere, including closely related species such
as Plasmodium yoelii. No member of this family is
characterized.
Length = 61
Score = 27.2 bits (61), Expect = 1.5
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 172 VTNWDDMEKIWHHTFYNE 189
+ N +DM IW+ E
Sbjct: 25 IPNRNDMLIIWNQVHGIE 42
>gnl|CDD|217386 pfam03141, Methyltransf_29, Putative
S-adenosyl-L-methionine-dependent methyltransferase.
This family is a putative S-adenosyl-L-methionine
(SAM)-dependent methyltransferase.
Length = 506
Score = 29.6 bits (67), Expect = 1.6
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 23 YVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 82
Y+ A ++ A G LD G GV+ + Y L +L + A +D+ + ++
Sbjct: 101 YIDFLAQMIPDIAWGGRVRTALDVGCGVAS----FGAYLLSRDVLTMSFAPKDVHEAQVQ 156
Query: 83 ILTERG 88
ERG
Sbjct: 157 FALERG 162
>gnl|CDD|220620 pfam10183, ESSS, ESSS subunit of NADH:ubiquinone oxidoreductase
(complex I). This subunit is part of the mitochondrial
NADH:ubiquinone oxidoreductase (complex I). It carries
mitochondrial import sequences.
Length = 101
Score = 27.4 bits (61), Expect = 2.8
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 159 GILTLKYPIEHGIVTNWDDMEKIWHHTFY 187
G L K P G W+D E ++ F+
Sbjct: 39 GRLFNKNPPPPGEKRKWEDWELPFYFGFF 67
>gnl|CDD|224441 COG1524, COG1524, Uncharacterized proteins of the AP superfamily
[General function prediction only].
Length = 450
Score = 28.7 bits (64), Expect = 3.5
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 159 GILTLKYPIEHGIVTN--WDDMEKIWHHTFYNELRVAP 194
++T YP EHGIV N +D F +
Sbjct: 91 TLITGSYPDEHGIVGNILYDPETGDSVLQFLLDNPTIL 128
>gnl|CDD|106978 PHA00670, PHA00670, hypothetical protein.
Length = 540
Score = 28.3 bits (63), Expect = 4.7
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 7 QGVVRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVL-DSGDGV-SHTVPIYEGY 60
+ V R M+ F Y+ + +SL G +V D + V + PI + Y
Sbjct: 101 ENVTRDMYSAFQKSNFYLELNETYISLGGFGTAAMVVEEDEDEVVVFQSSPIGDYY 156
>gnl|CDD|221386 pfam12029, DUF3516, Domain of unknown function (DUF3516). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is typically
between 460 to 473 amino acids in length. This domain is
found associated with pfam00270, pfam00271.
Length = 462
Score = 28.0 bits (63), Expect = 5.4
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 11/51 (21%)
Query: 9 VVRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVL----DSGDGVSHTVP 55
VVR M+E T YV S Y R+ G+VL D+ + TVP
Sbjct: 244 VVRDMYERAMTFTDYV-------SRYGLARSEGLVLRYLADAYRALRQTVP 287
>gnl|CDD|233715 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratase, large subunit.
This subfamily is a subset of the larger HacA family
(Homoaconitate hydratase family, TIGR01343) and is most
closely related to the 3-isopropylmalate dehydratase,
large subunits which form TIGR00170. This subfamily
includes the members of TIGR01343 which are gene
clustered with other genes of leucine biosynthesis. The
rest of the subfamily includes mainly archaeal species
which exhibit two hits to this model. In these cases it
is possible that one or the other of the hits does not
have a 3-isopropylmalate dehydratase activity but rather
one of the other related aconitase-like activities.
Length = 412
Score = 27.8 bits (62), Expect = 5.6
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 37 GRTTGI-VLDSGDGVSHTVPIYEGYALP 63
+ GI V D G+G+ H V + EGYA P
Sbjct: 82 AKEHGIPVFDVGEGICHQVLVEEGYAGP 109
>gnl|CDD|131964 TIGR02918, TIGR02918, accessory Sec system glycosylation protein
GtfA. Members of this protein family are found only in
Gram-positive bacteria of the Firmicutes lineage,
including several species of Staphylococcus,
Streptococcus, and Lactobacillus. Members are associated
with glycosylation of serine-rich glycoproteins exported
by the accessory Sec system [Protein fate, Protein
modification and repair].
Length = 500
Score = 27.7 bits (62), Expect = 6.0
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 176 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN-PKANREKMTQIMFETFNTPAMYVAIQA 234
D E IW + ++ ++++AP + V E L REK +I FN +++V
Sbjct: 58 KDDEIIWLYQYFTDIKIAPTTYTVDDLEKELGLEITRREKNGKIKKLFFNNDSIFVTCYL 117
Query: 235 VN 236
N
Sbjct: 118 KN 119
>gnl|CDD|233454 TIGR01536, asn_synth_AEB, asparagine synthase
(glutamine-hydrolyzing). This model describes the
glutamine-hydrolysing asparagine synthase. A poorly
conserved C-terminal extension was removed from the
model. Bacterial members of the family tend to have a
long, poorly conserved insert lacking from archaeal and
eukaryotic sequences. Multiple isozymes have been
demonstrated, such as in Bacillus subtilis. Long-branch
members of the phylogenetic tree (which typically were
also second or third candidate members from their
genomes) were removed from the seed alignment and score
below trusted cutoff [Amino acid biosynthesis, Aspartate
family].
Length = 466
Score = 27.7 bits (62), Expect = 6.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 80 LMKILTERGYSFTTTAEREIVLAA 103
L + L +GY+F T ++ E++L
Sbjct: 82 LREELEAKGYTFQTDSDTEVILHL 105
>gnl|CDD|177818 PLN02159, PLN02159, Fe(2+) transport protein.
Length = 337
Score = 27.6 bits (61), Expect = 6.5
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 24 VAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 58
+AI + SLY S + G + D G H V +
Sbjct: 136 LAIDSMATSLYTSKNSVGPMPDHGHSHGHGVVLKT 170
>gnl|CDD|198362 cd07789, FGGY_CsGK_like, Cellulomonas sp. glycerol kinase-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a small group of
bacterial glycerol kinases (GK) with similarity to
Cellulomonas sp. glycerol kinase (CsGK). CsGK might
exist as a dimer. Its monomer is composed of two large
domains separated by a deep cleft that forms the active
site. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain. The regulation
of the catalytic activity of this group has not yet been
examined. Members in this subgroup belong to the FGGY
family of carbohydrate kinases.
Length = 495
Score = 27.8 bits (62), Expect = 6.8
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 91 FTTTAEREIVLAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM 143
T AE E LA V DNG F+G AP R +GV+VG+
Sbjct: 322 IKTAAEIE-TLARTVEDNGGVYFVPAFSGLFAPY-------WRSDARGVIVGL 366
>gnl|CDD|234713 PRK00283, xerD, site-specific tyrosine recombinase XerD; Reviewed.
Length = 299
Score = 27.1 bits (61), Expect = 8.7
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 62 LPHAILRLDLAGR-DLTDYLMKILTERGYSFTTTAEREIVL 101
L L L A R DL +L + L E GY T++A R L
Sbjct: 41 LAARGLSLAEATRDDLQAFLAE-LAEGGYKATSSARRLSAL 80
>gnl|CDD|222222 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase.
Length = 239
Score = 26.8 bits (60), Expect = 9.8
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 23 YVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 67
++++ A L G + IV S P Y G + A L
Sbjct: 111 FISLAKAAKPLMNEGGS--IVALSYIAAERVFPGYGGMGVAKAAL 153
>gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA
synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic
core domain. These enzymes attach Gln to the appropriate
tRNA. Like other class I tRNA synthetases, they
aminoacylate the 2'-OH of the nucleotide at the 3' end
of the tRNA. The core domain is based on the Rossman
fold and is responsible for the ATP-dependent formation
of the enzyme bound aminoacyl-adenylate. GlnRS contains
the characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. These enzymes function as
monomers. Archaea and most bacteria lack GlnRS. In these
organisms, the "non-discriminating" form of GluRS
aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu,
which is converted to Gln when appropriate by a
transamidation enzyme.
Length = 238
Score = 26.8 bits (60), Expect = 10.0
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 156 SKRGILTLKYPIEHGIVTNWDD 177
SKR +L L ++ G V WDD
Sbjct: 166 SKRKLLQL---VDEGYVDGWDD 184
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.409
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,599,032
Number of extensions: 1227576
Number of successful extensions: 1126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1108
Number of HSP's successfully gapped: 45
Length of query: 243
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 149
Effective length of database: 6,768,326
Effective search space: 1008480574
Effective search space used: 1008480574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)