RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy429
(243 letters)
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to
bistramide A, structural protein; HET: HIC ATP BID;
1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1
PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1*
1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0*
1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A*
...
Length = 375
Score = 282 bits (724), Expect = 3e-95
Identities = 127/134 (94%), Positives = 129/134 (96%)
Query: 102 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 161
ALV DNGSG+ KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL
Sbjct: 6 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 162 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 221
TLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFE
Sbjct: 66 TLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFE 125
Query: 222 TFNTPAMYVAIQAV 235
TFN PAMYVAIQAV
Sbjct: 126 TFNVPAMYVAIQAV 139
Score = 188 bits (479), Expect = 2e-58
Identities = 83/92 (90%), Positives = 87/92 (94%), Gaps = 1/92 (1%)
Query: 9 VVRIMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILR 68
+ +IMFETFN PAMYVAIQA VLSLYASGRTTGIVLDSGDGV+H VPIYEGYALPHAI+R
Sbjct: 119 MTQIMFETFNVPAMYVAIQA-VLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMR 177
Query: 69 LDLAGRDLTDYLMKILTERGYSFTTTAEREIV 100
LDLAGRDLTDYLMKILTERGYSF TTAEREIV
Sbjct: 178 LDLAGRDLTDYLMKILTERGYSFVTTAEREIV 209
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural
protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB:
1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A*
2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Length = 418
Score = 277 bits (710), Expect = 2e-92
Identities = 61/143 (42%), Positives = 81/143 (56%), Gaps = 9/143 (6%)
Query: 101 LAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGR--------PRHQGVMVGMGQKDSYVGD 152
L A VVD G+G K G+AG+ P+ + PS + + VM G+ D ++GD
Sbjct: 5 LPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGD 64
Query: 153 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 212
EA K K+PI HGIV +WD ME+ + LR PE+H LLTE PLN NR
Sbjct: 65 EAIEKPT-YATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENR 123
Query: 213 EKMTQIMFETFNTPAMYVAIQAV 235
E +IMFE+FN P +Y+A+QAV
Sbjct: 124 EYTAEIMFESFNVPGLYIAVQAV 146
Score = 186 bits (475), Expect = 2e-57
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 9/97 (9%)
Query: 12 IMFETFNTPAMYVAIQAAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALP 63
IMFE+FN P +Y+A+QA VL+L AS + TG V+DSGDGV+H +P+ EGY +
Sbjct: 129 IMFESFNVPGLYIAVQA-VLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIG 187
Query: 64 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 100
I + +AGRD+T ++ ++L +R E
Sbjct: 188 SCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETA 224
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein;
2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B*
2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B*
3dxm_B* 3rse_B 2p9k_B*
Length = 394
Score = 267 bits (684), Expect = 5e-89
Identities = 63/137 (45%), Positives = 87/137 (63%), Gaps = 3/137 (2%)
Query: 102 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR--HQGVMVGMGQKDSYVGDEAQSKRG 159
+V DNG+G K G+AG + P +FP++VGRP + + KD VGDEA R
Sbjct: 7 KVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRS 66
Query: 160 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQI 218
+L + YP+E+GIV NWDDM+ +W +TF E L + +LLTE P+NP NREK+ ++
Sbjct: 67 MLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEV 126
Query: 219 MFETFNTPAMYVAIQAV 235
MFET+ +YVAIQAV
Sbjct: 127 MFETYQFSGVYVAIQAV 143
Score = 189 bits (481), Expect = 2e-58
Identities = 52/89 (58%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
Query: 12 IMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 71
+MFET+ +YVAIQA VL+LYA G TG+V+DSGDGV+H P+YEG++LPH RLD+
Sbjct: 126 VMFETYQFSGVYVAIQA-VLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDI 184
Query: 72 AGRDLTDYLMKILTERGYSFTTTAEREIV 100
AGRD+T YL+K+L RGY+F +A+ E V
Sbjct: 185 AGRDITRYLIKLLLLRGYAFNHSADFETV 213
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding,
cytoskeleton, nucleot binding, WD repeat; HET: ATP;
3.78A {Schizosaccharomyces pombe}
Length = 427
Score = 261 bits (669), Expect = 3e-86
Identities = 58/156 (37%), Positives = 82/156 (52%), Gaps = 23/156 (14%)
Query: 103 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR----------------------HQGVM 140
+++DNG+G K G+AG+DAP VFP+++ H
Sbjct: 7 PIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 141 VGMGQKDSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 199
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 200 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV 235
LLTE PLNP NRE +IMFE+FN +Y+A+QAV
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAV 162
Score = 157 bits (399), Expect = 5e-46
Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 12/97 (12%)
Query: 12 IMFETFNTPAMYVAIQAAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALP 63
IMFE+FN +Y+A+QA VL+L AS + TG V+DSGDGV+H +P+ EGY +
Sbjct: 145 IMFESFNCAGLYIAVQA-VLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIG 203
Query: 64 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 100
+I + LAGRD+T ++ +L +R ++ +
Sbjct: 204 SSIKTMPLAGRDVTYFVQSLLRDRNEPDSS---LKTA 237
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus,
structural protein; HET: ATP; 3.40A {Saccharomyces
cerevisiae}
Length = 498
Score = 247 bits (631), Expect = 9e-80
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 102 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGIL 161
+A+V+D GS G++G D P+++ PS+ G+ G K + R
Sbjct: 24 SAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTA-----DEGNKKIFSEQSIGIPRKDY 78
Query: 162 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMF 220
LK IE+G+V +WD ++ W NEL + P LLTE N NR+K +++
Sbjct: 79 ELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLL 138
Query: 221 ETFNTPAMYVAIQAV 235
E A Y+A +
Sbjct: 139 EGMQFEACYLAPTST 153
Score = 150 bits (381), Expect = 6e-43
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 12 IMFETFNTPAMYVAIQAAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 71
++ E A Y+A + +A+GR +V+D G PI +G L + R +
Sbjct: 136 VLLEGMQFEACYLAPTS-TCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFI 194
Query: 72 AGRDLTDYLMKILTERGYSFTTTAER 97
AG+ + + K L + ++
Sbjct: 195 AGKFINHLIKKALEPKEIIPLFAIKQ 220
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.002
Identities = 26/147 (17%), Positives = 41/147 (27%), Gaps = 51/147 (34%)
Query: 109 GS---GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 165
GS GM + A + V+ + A T +
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVW------------------------NRA-DNHFKDTYGF 1659
Query: 166 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM--------TQ 217
I IV N + + H R+ E + ++ E ++ K EK+ T
Sbjct: 1660 SILD-IVIN-NPVNLTIHFGGEKGKRIR-ENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 218 IMFE--------TFNT-PAMY---VAI 232
F T T PA+ A
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLMEKAA 1743
>1zei_A Insulin, B28Asp-X-MCR; hormone, metabolic role, chemical activity,
insulin mutant, cross-LINK, glucose metabolism,
diabetes; 1.90A {Sus scrofa} SCOP: g.1.1.1 PDB: 6ins_E
1sju_A 2jzq_A
Length = 53
Score = 29.8 bits (67), Expect = 0.11
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 71 LAGRDLTDYLMKILTERGYSFTTTAEREIV 100
L G L + L + ERG+ +T A + IV
Sbjct: 6 LCGSHLVEALYLVCGERGFFYTDKAAKGIV 35
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 30.2 bits (68), Expect = 0.65
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 156 SKRGILTLKYPIEHGIVTNWDD 177
SKR + L ++ G V+ WDD
Sbjct: 309 SKRKLREL---VQAGRVSGWDD 327
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E.
coli, complex, ligase/RNA complex; HET: QSI; 2.25A
{Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P*
1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A*
1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Length = 553
Score = 29.9 bits (68), Expect = 0.87
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 3/22 (13%)
Query: 156 SKRGILTLKYPIEHGIVTNWDD 177
SKR + L + V WDD
Sbjct: 269 SKRKLNLL---VTDKHVEGWDD 287
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 29.2 bits (66), Expect = 1.2
Identities = 7/22 (31%), Positives = 8/22 (36%), Gaps = 3/22 (13%)
Query: 156 SKRGILTLKYPIEHGIVTNWDD 177
S G I G + WDD
Sbjct: 331 STSGAREG---ILRGEYSGWDD 349
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.8
Identities = 5/20 (25%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 188 NELRV-APEEHPVLLTEAPL 206
L++ A + P L +A +
Sbjct: 27 ASLKLYADDSAPALAIKATM 46
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme,
dockerin type I\:polysaccharide...; acetyl-xylan,
esterases, metal-ION; 1.05A {Clostridium thermocellum}
SCOP: c.6.2.3 PDB: 2c79_A
Length = 216
Score = 27.2 bits (61), Expect = 4.4
Identities = 18/74 (24%), Positives = 21/74 (28%), Gaps = 25/74 (33%)
Query: 25 AIQAAVLSLYASGRTTGIVL--DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 82
AAV++ G I+L D T AL I
Sbjct: 137 QRAAAVINGVRDG---TIILLHDVQPEPHPTPE-----ALDIII---------------P 173
Query: 83 ILTERGYSFTTTAE 96
L RGY F T E
Sbjct: 174 TLKSRGYEFVTLTE 187
>3q3q_A Alkaline phosphatase; hydrolase; 1.95A {Sphingomonas SP}
Length = 565
Score = 27.0 bits (58), Expect = 5.9
Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 5/125 (4%)
Query: 116 GFAGD--DAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 173
F+ D R + + R +G + G + + ILT P GI+
Sbjct: 50 QFSADLFSEYRQYYTGGLKRLTSEGAVFPRGYQSHAATETCPGHSTILTGSRPSRTGIIA 109
Query: 174 N-WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI 232
N W D++ N E P ++ + + T PA V
Sbjct: 110 NNWFDLDA--KREDKNLYCAEDESQPGSSSDKYEASPLHLKVPTLGGRMKAANPATRVVS 167
Query: 233 QAVNC 237
A
Sbjct: 168 VAGKD 172
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Length = 230
Score = 26.5 bits (59), Expect = 7.1
Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 22/74 (29%)
Query: 25 AIQAAVLSLYASGRTTG--IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 82
AI L+ G IVL + D TV +L +L +
Sbjct: 166 AIINTSFQLFLDQLDAGGNIVL-AHDIHYWTV-----ASLAERML--------------Q 205
Query: 83 ILTERGYSFTTTAE 96
+ RG TT +
Sbjct: 206 EVNARGLIATTVGD 219
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 26.4 bits (59), Expect = 8.6
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 127 FPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK---RGILTL 163
FP++V PR +G+M + DE + R ++ L
Sbjct: 375 FPAVVLDPRGRGLMCAFSLPTTADRDELIRQLWQRAVIVL 414
>3kmv_A Alpha-L-arabinofuranosidase B; protein:carboydrate interactions,
carbohydrate-binding modul trefoil fold, CBM42, sugar
binding protein; 1.80A {Clostridium thermocellum}
Length = 157
Score = 26.1 bits (57), Expect = 8.9
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 2 VGTTFQGVVRIMFETFNTPAMYVAIQAAVLSLYASGR---------TTGIVLDSGDGVSH 52
+ ++ + + F+++N P MY+ + + G+ VS
Sbjct: 1 MASSTNPITKAKFQSYNYPNMYIRHANFDARIDENVTPEMDSQWELVPGLANSGDGYVSI 60
Query: 53 TVPIYEGYALPHAILRLDLAGRDLTD 78
Y GY L H+ L L D T
Sbjct: 61 QSVNYPGYYLRHSNYDLSLEKNDGTS 86
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia
coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A*
1bkn_A 1nhj_A* 1b62_A*
Length = 333
Score = 26.3 bits (59), Expect = 9.5
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 5/22 (22%)
Query: 105 VVDNGSGMCKAGFAGDDAPRAV 126
+ DNG G+ K D+ A+
Sbjct: 58 IRDNGCGIKK-----DELALAL 74
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 26.4 bits (59), Expect = 9.5
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 86 ERGYSFTTTAEREIVLAALVVD 107
G + +T E E + A V D
Sbjct: 130 AVGLNLSTQTENEALFAEAVCD 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.409
Gapped
Lambda K H
0.267 0.0841 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,847,854
Number of extensions: 240634
Number of successful extensions: 515
Number of sequences better than 10.0: 1
Number of HSP's gapped: 499
Number of HSP's successfully gapped: 38
Length of query: 243
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 152
Effective length of database: 4,160,982
Effective search space: 632469264
Effective search space used: 632469264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.1 bits)