RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy429
(243 letters)
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 140
Score = 219 bits (558), Expect = 6e-74
Identities = 127/133 (95%), Positives = 129/133 (96%)
Query: 103 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 162
ALV DNGSG+ KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT
Sbjct: 1 ALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 60
Query: 163 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 222
LKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFET
Sbjct: 61 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFET 120
Query: 223 FNTPAMYVAIQAV 235
FN PAMYVAIQAV
Sbjct: 121 FNVPAMYVAIQAV 133
Score = 51.2 bits (122), Expect = 5e-09
Identities = 24/28 (85%), Positives = 25/28 (89%), Gaps = 1/28 (3%)
Query: 10 VRIMFETFNTPAMYVAIQAAVLSLYASG 37
+IMFETFN PAMYVAIQ AVLSLYASG
Sbjct: 114 TQIMFETFNVPAMYVAIQ-AVLSLYASG 140
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 158
Score = 199 bits (508), Expect = 4e-66
Identities = 61/143 (42%), Positives = 81/143 (56%), Gaps = 9/143 (6%)
Query: 101 LAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG--------RPRHQGVMVGMGQKDSYVGD 152
L A VVD G+G K G+AG+ P+ + PS + + VM G+ D ++GD
Sbjct: 3 LPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGD 62
Query: 153 EAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 212
EA K K+PI HGIV +WD ME+ + LR PE+H LLTE PLN NR
Sbjct: 63 EAIEKPTY-ATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENR 121
Query: 213 EKMTQIMFETFNTPAMYVAIQAV 235
E +IMFE+FN P +Y+A+QAV
Sbjct: 122 EYTAEIMFESFNVPGLYIAVQAV 144
Score = 58.9 bits (142), Expect = 1e-11
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 12 IMFETFNTPAMYVAIQAAVLSLYASGRTTGI 42
IMFE+FN P +Y+A+Q AVL+L AS + +
Sbjct: 127 IMFESFNVPGLYIAVQ-AVLALAASWTSRQV 156
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 109 bits (272), Expect = 9e-30
Identities = 59/63 (93%), Positives = 61/63 (96%)
Query: 38 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAER 97
RTTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSF TTAER
Sbjct: 1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAER 60
Query: 98 EIV 100
EIV
Sbjct: 61 EIV 63
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 258
Score = 109 bits (272), Expect = 2e-29
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 40 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREI 99
TG V+DSGDGV+H +P+ EGY + I + +AGRD+T ++ ++L +R E
Sbjct: 4 TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLET 63
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 190
Score = 100 bits (249), Expect = 1e-26
Identities = 35/60 (58%), Positives = 48/60 (80%)
Query: 41 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 100
G+V+DSGDGV+H P+YEG++LPH RLD+AGRD+T YL+K+L RGY+F +A+ E V
Sbjct: 1 GVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETV 60
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose
fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Length = 220
Score = 25.6 bits (55), Expect = 5.0
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 75 DLTDYLMKILTERGYSFTTTAE 96
LT L+ L +GY T E
Sbjct: 187 SLTQKLIDTLKSKGYRAVTVGE 208
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium
carotovorum [TaxId: 554]}
Length = 204
Score = 25.3 bits (55), Expect = 5.5
Identities = 2/27 (7%), Positives = 8/27 (29%)
Query: 78 DYLMKILTERGYSFTTTAEREIVLAAL 104
+L+ + + E++
Sbjct: 62 TFLIGLAGVWEGEAYLANDAELLALLF 88
>d1ei6a_ c.76.1.4 (A:) Phosphonoacetate hydrolase {Pseudomonas
fluorescens [TaxId: 294]}
Length = 406
Score = 25.6 bits (54), Expect = 6.5
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 160 ILTLKYPIEHGIVTNWDDMEKIWHHTFYN 188
I+T P HGI N+ ++ N
Sbjct: 70 IVTGAPPSVHGICGNFFFDQETQEEVLMN 98
>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 421
Score = 25.5 bits (56), Expect = 7.8
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 57 YEGYALPHAILRLDLAGRDLTDYLMK 82
Y GY +P +R D A + T +
Sbjct: 185 YAGYQMPDGTIRGDAATLEFTQLCID 210
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 25.4 bits (54), Expect = 7.9
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 127 FPSIVGRPRHQGVMVGMGQKDSYVGDEAQS---KRGILTL 163
+P + R R +G D + ++ S +G++
Sbjct: 388 YPQFISRVRGRGTFCSFDTPDESIRNKLISIARNKGVMLG 427
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.409
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 913,546
Number of extensions: 41770
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 13
Length of query: 243
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,268,006
Effective search space: 202880960
Effective search space used: 202880960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)