BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4290
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q80TY5|VP13B_MOUSE Vacuolar protein sorting-associated protein 13B OS=Mus musculus
GN=Vps13b PE=1 SV=2
Length = 4013
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 16 LQEFFRSTLQLHLWEGQACFHNLELDLEALES--LVPFHFVSGHINELRIKVPWTSLGSS 73
++ S LQL LW G LEL L+ LE +PF F+SGHI+ELRI VPWT LGS
Sbjct: 18 IKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSE 77
Query: 74 SVEVVIDTI 82
V + I+T+
Sbjct: 78 PVVITINTM 86
>sp|Q7Z7G8|VP13B_HUMAN Vacuolar protein sorting-associated protein 13B OS=Homo sapiens
GN=VPS13B PE=1 SV=2
Length = 4022
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 16 LQEFFRSTLQLHLWEGQACFHNLELDLEALES--LVPFHFVSGHINELRIKVPWTSLGSS 73
++ S LQL LW G LEL L+ LE +PF F+SGHI+ELRI VPWT LGS
Sbjct: 18 IKNLKPSDLQLSLWGGDVVLSKLELKLDVLEQELKLPFTFLSGHIHELRIHVPWTKLGSE 77
Query: 74 SVEVVIDTI 82
V + I+T+
Sbjct: 78 PVVITINTM 86
>sp|Q5H8C4|VP13A_MOUSE Vacuolar protein sorting-associated protein 13A OS=Mus musculus
GN=Vps13a PE=1 SV=1
Length = 3166
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 6 NQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIK 64
N+F + V L E S L L +W+G NL + AL L VPF GHI L++K
Sbjct: 12 NRFLGDYVVNLDE---SQLSLGIWKGAVALKNLVIKENALHELDVPFKVKVGHIGSLKLK 68
Query: 65 VPWTSLGSSSVEVVIDTI 82
+PW +L + VE V++ I
Sbjct: 69 IPWKNLYTQPVEAVLEEI 86
>sp|Q96RL7|VP13A_HUMAN Vacuolar protein sorting-associated protein 13A OS=Homo sapiens
GN=VPS13A PE=1 SV=2
Length = 3174
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 6 NQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIK 64
N+F + V +L S L L +W+G NL++ AL L VPF GHI L++
Sbjct: 12 NRFLGDYVVDLDT---SQLSLGIWKGAVALKNLQIKENALSQLDVPFKVKVGHIGNLKLI 68
Query: 65 VPWTSLGSSSVEVVIDTI 82
+PW +L + VE V++ I
Sbjct: 69 IPWKNLYTQPVEAVLEEI 86
>sp|Q54KX3|VP13F_DICDI Putative vacuolar protein sorting-associated protein 13F
OS=Dictyostelium discoideum GN=vps13F PE=3 SV=1
Length = 4246
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 16 LQEFFRS----TLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSL 70
L+E+ ++ L + +W G NLEL ALE +PF G + +L +K+PW +L
Sbjct: 14 LKEYIKALNTDNLNISIWSGNVSLENLELKSRALEKFNLPFTIKEGFLGKLSLKIPWNNL 73
Query: 71 GSSSVEVVIDTI 82
+ V VVID +
Sbjct: 74 KTEPVIVVIDQL 85
>sp|Q555C6|VP13B_DICDI Putative vacuolar protein sorting-associated protein 13B
OS=Dictyostelium discoideum GN=vps13B PE=3 SV=1
Length = 6061
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 24 LQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSLGSSSVEVVIDTI 82
L+++++ G NLE+ EAL+S +P H G I L +K+PWT+L SS V ID I
Sbjct: 26 LKINVFSGNVVLKNLEIKGEALQSFKLPLHVQKGIIGTLTLKIPWTNLKSSPVIFDIDCI 85
>sp|O42926|VP13B_SCHPO Vacuolar protein sorting-associated protein 13b
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps13b PE=2 SV=1
Length = 3131
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 1 MTGTSNQFCENEVAELQEFFRST-LQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHI 58
+ G F + E E F +T L++ +W G NL+L A L +P G +
Sbjct: 2 LEGLLANFLNRLLGEYIENFDATQLKVAVWNGDVTLRNLQLKRSAFRKLELPISVQYGLV 61
Query: 59 NELRIKVPWTSLGSSSVEVVIDTIGYLSGIFE 90
EL +K+PW+SL + VE+ I I L+ + E
Sbjct: 62 EELTLKIPWSSLKNKPVEIYIVGIRALASMEE 93
>sp|P87319|VP13A_SCHPO Vacuolar protein sorting-associated protein 13a
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps13a PE=3 SV=2
Length = 3011
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 24 LQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSLGSSSVEVVIDTI 82
L + +W G HNL + EAL+ L +P SG I +++PW++L + S+ + I+ I
Sbjct: 26 LNIGVWGGHVSLHNLRIKPEALDKLGIPIEITSGLIGTFTLEIPWSNLRNKSLTINIEDI 85
Query: 83 GYLS 86
YLS
Sbjct: 86 -YLS 88
>sp|Q8BX70|VP13C_MOUSE Vacuolar protein sorting-associated protein 13C OS=Mus musculus
GN=Vps13c PE=1 SV=2
Length = 3748
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 6 NQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIK 64
N+F + V L +S L+L +W G NL++ AL L VPF +G I++L +K
Sbjct: 12 NRFLGDYVENLN---KSQLKLGIWGGNVALDNLQIKENALSELDVPFKVKAGQIDKLTLK 68
Query: 65 VPWTSLGSSSVEVVID 80
+PW +L +V ++
Sbjct: 69 IPWKNLYGEAVVATLE 84
>sp|Q709C8|VP13C_HUMAN Vacuolar protein sorting-associated protein 13C OS=Homo sapiens
GN=VPS13C PE=1 SV=1
Length = 3753
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 6 NQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIK 64
N+F + V L +S L+L +W G NL++ AL L VPF +G I++L +K
Sbjct: 12 NRFLGDYVENLN---KSQLKLGIWGGNVALDNLQIKENALSELDVPFKVKAGQIDKLTLK 68
Query: 65 VPWTSLGSSSVEVVID 80
+PW +L +V ++
Sbjct: 69 IPWKNLYGEAVVATLE 84
>sp|Q54LN2|VP13D_DICDI Putative vacuolar protein sorting-associated protein 13D
OS=Dictyostelium discoideum GN=vps13D PE=3 SV=1
Length = 4592
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 16 LQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSLGSSS 74
LQE + L++ + G N+E+ EA ++ +P G + +L IKVPWTSL S S
Sbjct: 19 LQEVGKKQLKIGVLNGNVVLKNIEVKPEAFKAFDLPLSIDRGIVGKLTIKVPWTSLKSES 78
Query: 75 VEVVIDTIGYLS 86
V V + I L+
Sbjct: 79 VVVHLQDIYILA 90
>sp|Q07878|VPS13_YEAST Vacuolar protein sorting-associated protein 13 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS13 PE=1
SV=1
Length = 3144
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 16 LQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSLGSSS 74
++ F + L + +W G NL+L + L+SL +P SG + +L + VPW+SL +
Sbjct: 18 VENFDPNQLNVGIWSGDVKLKNLKLRKDCLDSLNLPIDVKSGILGDLVLTVPWSSLKNKP 77
Query: 75 VEVVID 80
V+++I+
Sbjct: 78 VKIIIE 83
>sp|Q54LB8|VP13A_DICDI Putative vacuolar protein sorting-associated protein 13A
OS=Dictyostelium discoideum GN=vps13A PE=2 SV=1
Length = 3373
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 21 RSTLQLHLWEGQACFHNLELDLEALESL---VPFHFVSGHINELRIKVPWTSLGSSSVEV 77
+ L++ ++ G NLEL +AL +L +P G + +L +KVPW L S V +
Sbjct: 24 KDQLKIGIFGGSVQLQNLELKEDALANLPINLPITVKKGFLGKLDLKVPWKDLKSKPVII 83
Query: 78 VIDTIGYLS 86
ID I L+
Sbjct: 84 NIDCIYALA 92
>sp|P0CM30|ATG2_CRYNJ Autophagy-related protein 2 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=ATG2 PE=3 SV=1
Length = 1935
Score = 36.2 bits (82), Expect = 0.059, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 24 LQLHLWEGQACFHNLELDLEALESLVP----FHFVSGHINELRIKVPWTSLGSSSVEVVI 79
+Q + EG NLE++ + + +P SG IN+L K+P+ +L S ++V +
Sbjct: 54 IQAQVSEGWVEIENLEIECSEINNYIPPPLPLSLTSGTINKLTAKLPFPNLWSDPLQVSL 113
Query: 80 DTI 82
DT+
Sbjct: 114 DTL 116
>sp|P0CM31|ATG2_CRYNB Autophagy-related protein 2 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=ATG2 PE=3 SV=1
Length = 1935
Score = 36.2 bits (82), Expect = 0.059, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 24 LQLHLWEGQACFHNLELDLEALESLVP----FHFVSGHINELRIKVPWTSLGSSSVEVVI 79
+Q + EG NLE++ + + +P SG IN+L K+P+ +L S ++V +
Sbjct: 54 IQAQVSEGWVEIENLEIECSEINNYIPPPLPLSLTSGTINKLTAKLPFPNLWSDPLQVSL 113
Query: 80 DTI 82
DT+
Sbjct: 114 DTL 116
>sp|Q55EI3|VP13E_DICDI Putative vacuolar protein sorting-associated protein 13E
OS=Dictyostelium discoideum GN=vps13E PE=3 SV=1
Length = 4241
Score = 33.1 bits (74), Expect = 0.57, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 23 TLQLHLWEGQACFHNLELDLEALES-LVPFHFVSGHINELRIKVPWTSLGSSSVEVVIDT 81
TL + W+GQ NL+ E S +PF +SG + + I +P + V ID
Sbjct: 23 TLSIPWWKGQIVLENLKFKKELFSSNELPFDLLSGVVKRVVITIPILHFLKDPIVVNIDG 82
Query: 82 IGYLSG 87
+ L G
Sbjct: 83 VFLLFG 88
>sp|Q6NRZ1|UH1BL_XENLA UHRF1-binding protein 1-like OS=Xenopus laevis GN=uhrf1bp1l PE=2
SV=1
Length = 1415
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 24 LQLHLWEGQACFHNLELDLEALESLV--PFHFVSGHI--NELRIKVPWTSLGSSSVEVVI 79
+ L +G+ NLELD E L++++ P + N+ I++PWT L + + + +
Sbjct: 25 INLSTLKGEGQLTNLELDEEVLQNMLDLPTWLAINKVFCNKAAIRIPWTKLKTHPISLSL 84
Query: 80 DTI 82
D +
Sbjct: 85 DKV 87
>sp|A2RSJ4|UH1BL_MOUSE UHRF1-binding protein 1-like OS=Mus musculus GN=Uhrf1bp1l PE=2
SV=2
Length = 1457
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 24 LQLHLWEGQACFHNLELDLEALESLV--PFHFVSGHI--NELRIKVPWTSLGSSSVEVVI 79
+ L +G+ NLELD E L++++ P + N+ I++PWT L + + + +
Sbjct: 25 INLSTLKGEGELKNLELDEEVLQNMLDLPTWLAISKVFCNKASIRIPWTKLKTQPICLSL 84
Query: 80 DTI 82
D +
Sbjct: 85 DKV 87
>sp|A0JNW5|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapiens GN=UHRF1BP1L PE=1
SV=2
Length = 1464
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 24 LQLHLWEGQACFHNLELDLEALESLV--PFHFVSGHI--NELRIKVPWTSLGSSSVEVVI 79
+ L +G+ NLELD E L++++ P + N+ I++PWT L + + + +
Sbjct: 25 INLSTLKGEGELKNLELDEEVLQNMLDLPTWLAINKVFCNKASIRIPWTKLKTHPICLSL 84
Query: 80 DTI 82
D +
Sbjct: 85 DKV 87
>sp|Q6E7D7|CPS4_ORYSI Syn-copalyl diphosphate synthase OS=Oryza sativa subsp. indica
GN=CPS4 PE=2 SV=1
Length = 767
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 36 HNLELDLEALESLVPFHFV-SGHINELRIK--VPWTSLGSSSVEVVIDTIGYLSGIFECM 92
NL +LE L SLVPF SG + E + + WT+ SS + DT L E
Sbjct: 598 KNLTSNLEELISLVPFDDAYSGSLREAWKQWLMAWTAKESSQESIEGDTAILLVRAIEIF 657
Query: 93 AAIHALNGRYATALQYAIL 111
H L G+ +Y+ L
Sbjct: 658 GGRHVLTGQRPDLWEYSQL 676
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,655,837
Number of Sequences: 539616
Number of extensions: 1628391
Number of successful extensions: 3240
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3216
Number of HSP's gapped (non-prelim): 21
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)