Query psy4290
Match_columns 135
No_of_seqs 106 out of 422
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 21:47:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12624 Chorein_N: N-terminal 99.9 2.7E-27 5.9E-32 172.4 9.2 88 11-98 12-100 (118)
2 COG5043 MRS6 Vacuolar protein 99.9 6.3E-22 1.4E-26 191.0 8.4 87 3-92 8-95 (2552)
3 KOG1809|consensus 99.7 7.7E-18 1.7E-22 165.7 9.3 92 3-97 8-100 (1827)
4 KOG2955|consensus 99.5 5.6E-14 1.2E-18 129.1 6.7 92 1-92 1-97 (1069)
5 PF05359 DUF748: Domain of Unk 58.0 31 0.00067 24.9 5.2 58 31-88 77-138 (151)
6 PF13345 DUF4098: Domain of un 49.1 31 0.00067 21.4 3.5 24 18-41 1-24 (76)
7 cd07387 MPP_PolD2_C PolD2 (DNA 47.1 22 0.00048 29.5 3.2 105 10-126 82-191 (257)
8 PRK13991 cell division topolog 41.2 28 0.00061 24.6 2.6 28 5-32 43-70 (87)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 39.2 45 0.00098 22.5 3.3 23 16-38 15-37 (83)
10 cd06464 ACD_sHsps-like Alpha-c 33.0 94 0.002 19.7 4.0 26 16-41 15-40 (88)
11 PF06115 DUF956: Domain of unk 31.0 36 0.00078 25.5 1.8 22 63-84 46-67 (118)
12 PRK13989 cell division topolog 29.5 60 0.0013 22.6 2.7 27 5-32 44-70 (84)
13 PHA03001 putative virion core 29.5 47 0.001 25.4 2.3 29 4-33 35-63 (132)
14 TIGR03545 conserved hypothetic 26.4 1.1E+02 0.0023 28.2 4.4 63 19-87 45-111 (555)
15 PRK13987 cell division topolog 25.3 42 0.00092 23.8 1.3 28 4-32 40-67 (91)
16 COG0851 MinE Septum formation 22.3 93 0.002 22.2 2.6 34 6-41 44-77 (88)
17 PRK00296 minE cell division to 22.1 75 0.0016 22.2 2.0 26 5-31 43-68 (86)
18 PF04441 Pox_VERT_large: Poxvi 21.3 3.3E+02 0.0072 26.0 6.5 67 19-88 220-298 (700)
19 cd01259 PH_Apbb1ip Apbb1ip (Am 21.1 51 0.0011 24.6 1.1 18 117-134 63-80 (114)
No 1
>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter
Probab=99.94 E-value=2.7e-27 Score=172.37 Aligned_cols=88 Identities=31% Similarity=0.443 Sum_probs=82.9
Q ss_pred HhhcccccCCcCCeeEEEeceeEEEeeceecHHHhhhc-CCeEEeEEEEeEEEEEEecCCCCCccEEEEeCceEEeeeec
Q psy4290 11 NEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSLGSSSVEVVIDTIGYLSGIF 89 (135)
Q Consensus 11 ~lg~Yienld~~qL~lsL~~G~v~L~nL~Lk~daL~~l-lP~~v~~G~Ig~L~i~IPW~~L~s~pv~I~I~~V~I~l~~~ 89 (135)
.||+||+|++.+|+++++|+|+++|+||+||+++|+.+ +|+++++|+||+++++|||++|+++|++|+|+||+++++|.
T Consensus 12 ~Lg~yi~~l~~~ql~vsl~~G~v~L~nl~l~~~~l~~~~lP~~v~~g~i~~l~i~IPw~~l~~~pv~i~I~~v~l~~~~~ 91 (118)
T PF12624_consen 12 YLGRYIENLDKDQLSVSLWNGEVELRNLELKKDALNNLGLPIEVKSGSIGKLRIKIPWTSLWSKPVVIEIEDVFLVLKPK 91 (118)
T ss_pred HHHHHHhcCCHHHeeeeeccCceEEEccEeeHHHhcCcCCCeEEeEEEeeeEEEEEEhHHhCCCCEEEEEeeEEEEEEEC
Confidence 44799999999999999999999999999999999999 99999999999999999999999999999999999999998
Q ss_pred chhhhhHHh
Q psy4290 90 ECMAAIHAL 98 (135)
Q Consensus 90 ~~~~~~~~~ 98 (135)
+...+..+.
T Consensus 92 ~~~~~~~~~ 100 (118)
T PF12624_consen 92 DQDEWDNEE 100 (118)
T ss_pred CccccChHH
Confidence 876665554
No 2
>COG5043 MRS6 Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
Probab=99.86 E-value=6.3e-22 Score=190.97 Aligned_cols=87 Identities=29% Similarity=0.515 Sum_probs=82.0
Q ss_pred chhHHHHHHhhcccccCCcCCeeEEEeceeEEEeeceecHHHhhhc-CCeEEeEEEEeEEEEEEecCCCCCccEEEEeCc
Q psy4290 3 GTSNQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSLGSSSVEVVIDT 81 (135)
Q Consensus 3 ~~~n~f~~~lg~Yienld~~qL~lsL~~G~v~L~nL~Lk~daL~~l-lP~~v~~G~Ig~L~i~IPW~~L~s~pv~I~I~~ 81 (135)
+++|+|+ |.||||+|..||++++|+|+|+|+||+||+++|+.| +|++|++|.||.|++.|||++|+.+||+|.|+|
T Consensus 8 nlLNRlL---GsYVENfD~~QLnvgvw~GdVsl~NLriK~saldkL~lpi~V~sgligtLtl~iPWsSLknKPVeIyIed 84 (2552)
T COG5043 8 NLLNRLL---GSYVENFDTKQLNVGVWGGDVSLHNLRIKPSALDKLGLPIEVTSGLIGTLTLEIPWSSLKNKPVEIYIED 84 (2552)
T ss_pred HHHHHHH---HHHHhhcCccceeEEEecceeEEEeeeecHHHHhhcCCCeEEeecceeeEEEEeehHHhcCCCeEEEEEe
Confidence 4566665 799999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred eEEeeeecchh
Q psy4290 82 IGYLSGIFECM 92 (135)
Q Consensus 82 V~I~l~~~~~~ 92 (135)
+++.+.|+...
T Consensus 85 i~llis~~~~~ 95 (2552)
T COG5043 85 IYLLISPQAKN 95 (2552)
T ss_pred eEEEechhhcc
Confidence 99999887654
No 3
>KOG1809|consensus
Probab=99.73 E-value=7.7e-18 Score=165.71 Aligned_cols=92 Identities=32% Similarity=0.489 Sum_probs=85.6
Q ss_pred chhHHHHHHhhcccccCCcCCeeEEEeceeEEEeeceecHHHhhhc-CCeEEeEEEEeEEEEEEecCCCCCccEEEEeCc
Q psy4290 3 GTSNQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSLGSSSVEVVIDT 81 (135)
Q Consensus 3 ~~~n~f~~~lg~Yienld~~qL~lsL~~G~v~L~nL~Lk~daL~~l-lP~~v~~G~Ig~L~i~IPW~~L~s~pv~I~I~~ 81 (135)
.++|+|+ |.|++|+|.+||++++|+|+|+|+||++|+++|+.| +|+++.+|.||++.++|||++|..+|+.+.++|
T Consensus 8 ~lLnr~L---G~yv~nld~~QL~lgIw~GdV~l~nL~ik~~aL~~L~~P~~v~~g~ig~l~L~IPw~sL~~~pv~~~i~~ 84 (1827)
T KOG1809|consen 8 DLLNRFL---GDYVENLDRSQLNLGIWGGDVVLSNLQIKESALSKLDLPFEVKSGLIGTLTLKIPWKSLYNKPVEINIED 84 (1827)
T ss_pred HHHHHHh---hhcccCCCCCcceEEEecceeEeechhhCHHHHhccCCCeEEeeeeeeeEEEeccchhcccCceEEEEee
Confidence 4577777 699999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred eEEeeeecchhhhhHH
Q psy4290 82 IGYLSGIFECMAAIHA 97 (135)
Q Consensus 82 V~I~l~~~~~~~~~~~ 97 (135)
++++..|.....++.+
T Consensus 85 i~~l~~p~s~~~~~~~ 100 (1827)
T KOG1809|consen 85 IYLLVVPLSNVKYDPE 100 (1827)
T ss_pred eeeEeecccccccCch
Confidence 9999998887655443
No 4
>KOG2955|consensus
Probab=99.48 E-value=5.6e-14 Score=129.15 Aligned_cols=92 Identities=22% Similarity=0.329 Sum_probs=85.8
Q ss_pred CCc-hhHHHHHHhhcccccCCcCCeeEEEeceeEEEeeceecHHHhhhc--CC--eEEeEEEEeEEEEEEecCCCCCccE
Q psy4290 1 MTG-TSNQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL--VP--FHFVSGHINELRIKVPWTSLGSSSV 75 (135)
Q Consensus 1 ~~~-~~n~f~~~lg~Yienld~~qL~lsL~~G~v~L~nL~Lk~daL~~l--lP--~~v~~G~Ig~L~i~IPW~~L~s~pv 75 (135)
|+| .+||..+||++|.+||.+||++++.++|+.+|+||+|++++|... || +.|+..++|++.|.|||++|.++|+
T Consensus 1 M~sIIk~ql~khLs~ftKnltpdqi~L~~lKG~~qL~nleineevL~~~L~LP~wL~I~~afc~k~~I~lPwtklkT~PI 80 (1069)
T KOG2955|consen 1 MESIIKRQLEKHLSYFTKNLTPDQIKLQGLKGTAQLSNLEINEEVLHASLGLPPWLSITTAFCGKLEIMLPWTKLKTEPI 80 (1069)
T ss_pred CchHHHHHHHHHHHHHHhcCChhhEeeeeccccceecceecCHHHHHHhhcCCchheeeeeeecceEEeccchhccccce
Confidence 444 479999999999999999999999999999999999999999988 88 8999999999999999999999999
Q ss_pred EEEeCceEEeeeecchh
Q psy4290 76 EVVIDTIGYLSGIFECM 92 (135)
Q Consensus 76 ~I~I~~V~I~l~~~~~~ 92 (135)
+|.||.|.++++..++.
T Consensus 81 ~v~iDkl~l~le~~~e~ 97 (1069)
T KOG2955|consen 81 VVQIDKLDLVLEENPEA 97 (1069)
T ss_pred EEEeeeeeEEeecCccc
Confidence 99999999999776654
No 5
>PF05359 DUF748: Domain of Unknown Function (DUF748); InterPro: IPR008023 This is a family of proteins of unknown function.
Probab=58.02 E-value=31 Score=24.85 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=39.0
Q ss_pred eeEEEeeceecH--HHhhhcCCeEEeEEEEeE-EEEEEec-CCCCCccEEEEeCceEEeeee
Q psy4290 31 GQACFHNLELDL--EALESLVPFHFVSGHINE-LRIKVPW-TSLGSSSVEVVIDTIGYLSGI 88 (135)
Q Consensus 31 G~v~L~nL~Lk~--daL~~llP~~v~~G~Ig~-L~i~IPW-~~L~s~pv~I~I~~V~I~l~~ 88 (135)
|+++++++.|.. ..+...+|+++.+|.+.- ++++++= ..-.+-.-.+.++++.+.-+.
T Consensus 77 ~~~~l~~l~L~~~~pyl~~~~~~~l~~G~l~~~~~~~~~~~~~~l~~~g~~~l~~l~l~~~~ 138 (151)
T PF05359_consen 77 GTLKLNNLDLAPLQPYLAQYLPFQLQSGQLDLDLNYKLAKGDGQLSANGKLSLNDLRLADKG 138 (151)
T ss_pred EEEEEeCCChHHhhhhhHhhcCcccceEEEEEEEEEEEccCCceEEEeCeEEEEEEEeecCC
Confidence 788889988885 445555999999999995 6666610 001123456777777776654
No 6
>PF13345 DUF4098: Domain of unknown function (DUF4098)
Probab=49.11 E-value=31 Score=21.43 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=16.9
Q ss_pred cCCcCCeeEEEeceeEEEeeceec
Q psy4290 18 EFFRSTLQLHLWEGQACFHNLELD 41 (135)
Q Consensus 18 nld~~qL~lsL~~G~v~L~nL~Lk 41 (135)
|+..+++++..-+|.+.+++++.+
T Consensus 1 nv~~~~l~~~~~~G~i~~~~~~~~ 24 (76)
T PF13345_consen 1 NVEADNLNVQTSSGDIKLTNVKAD 24 (76)
T ss_pred CcCccEEEEEEeEEEEEECceEec
Confidence 345667777777777777777766
No 7
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=47.08 E-value=22 Score=29.45 Aligned_cols=105 Identities=21% Similarity=0.203 Sum_probs=67.6
Q ss_pred HHhhcccccCCcCCeeEEEeceeEEEeeceecHHHhhhc-CCeEEeEEEEeEEEEEEecCCCCCccEEEEeCceEEeeee
Q psy4290 10 ENEVAELQEFFRSTLQLHLWEGQACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSLGSSSVEVVIDTIGYLSGI 88 (135)
Q Consensus 10 ~~lg~Yienld~~qL~lsL~~G~v~L~nL~Lk~daL~~l-lP~~v~~G~Ig~L~i~IPW~~L~s~pv~I~I~~V~I~l~~ 88 (135)
+.+.+|+.++- +.+.|.+.-|+---.|.-+-...|-.- +|-...+ ..-.+-+-|..++++|+.++...
T Consensus 82 ~~ld~~l~~l~-~~i~V~imPG~~Dp~~~~lPQqplh~~lfp~s~~~----------~~~~~vtNP~~~~i~g~~vLgts 150 (257)
T cd07387 82 KELDNFLSQLA-SSVPVDLMPGEFDPANHSLPQQPLHRCLFPKSSNY----------STLNLVTNPYEFSIDGVRVLGTS 150 (257)
T ss_pred HHHHHHHHhhh-cCCeEEECCCCCCcccccCCCCCCCHHHhhccccc----------CCcEEeCCCeEEEECCEEEEEEC
Confidence 34556666665 467888888876666666555554433 4432221 12335678999999999998865
Q ss_pred cchhhhhHHhhhchhhHHHHHHHhcccCCccCce----eeee
Q psy4290 89 FECMAAIHALNGRYATALQYAILLVPIGHSAPTA----WCFK 126 (135)
Q Consensus 89 ~~~~~~~~~~~~s~~~s~qlA~~~~~~~~~~~~~----~~~~ 126 (135)
-+...... .+....+.++.-+...+-+|-+||| ||+-
T Consensus 151 Gqni~Di~-ky~~~~~~l~~me~~L~wrHlaPTaPDTL~~yP 191 (257)
T cd07387 151 GQNVDDIL-KYSSLESRLDILERTLKWRHIAPTAPDTLWCYP 191 (257)
T ss_pred CCCHHHHH-HhCCCCCHHHHHHHHHHhcccCCCCCCcccccc
Confidence 54333322 2223566788888889999999965 9975
No 8
>PRK13991 cell division topological specificity factor MinE; Provisional
Probab=41.19 E-value=28 Score=24.56 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=22.8
Q ss_pred hHHHHHHhhcccccCCcCCeeEEEecee
Q psy4290 5 SNQFCENEVAELQEFFRSTLQLHLWEGQ 32 (135)
Q Consensus 5 ~n~f~~~lg~Yienld~~qL~lsL~~G~ 32 (135)
.+-.++-+.+|++.+|.+++++.+=+++
T Consensus 43 k~eil~VIsKYv~~Id~~~i~V~l~~~~ 70 (87)
T PRK13991 43 KADLAEVIKRYVPAIDAEAIEVTLSRGE 70 (87)
T ss_pred HHHHHHHHHHHhcccCccceEEEEEeCC
Confidence 4556677799999999999999987754
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=39.16 E-value=45 Score=22.46 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=19.6
Q ss_pred cccCCcCCeeEEEeceeEEEeec
Q psy4290 16 LQEFFRSTLQLHLWEGQACFHNL 38 (135)
Q Consensus 16 ienld~~qL~lsL~~G~v~L~nL 38 (135)
+-+++++.|+|.+-+|.+.++-=
T Consensus 15 lpG~~~edI~V~v~~~~L~I~g~ 37 (83)
T cd06478 15 VKHFSPEELSVKVLGDFVEIHGK 37 (83)
T ss_pred CCCCCHHHeEEEEECCEEEEEEE
Confidence 45899999999999999988763
No 10
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=32.98 E-value=94 Score=19.72 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=21.0
Q ss_pred cccCCcCCeeEEEeceeEEEeeceec
Q psy4290 16 LQEFFRSTLQLHLWEGQACFHNLELD 41 (135)
Q Consensus 16 ienld~~qL~lsL~~G~v~L~nL~Lk 41 (135)
+-+++++++++.+-++.+.++--+-.
T Consensus 15 lpg~~~~~i~V~v~~~~l~I~g~~~~ 40 (88)
T cd06464 15 LPGFKKEDIKVEVEDGVLTISGEREE 40 (88)
T ss_pred CCCCCHHHeEEEEECCEEEEEEEEec
Confidence 45789999999999999998855443
No 11
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=30.98 E-value=36 Score=25.53 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=16.6
Q ss_pred EEEecCCCCCccEEEEeCceEE
Q psy4290 63 IKVPWTSLGSSSVEVVIDTIGY 84 (135)
Q Consensus 63 i~IPW~~L~s~pv~I~I~~V~I 84 (135)
|+|||..+..--..|.+.|=+|
T Consensus 46 IQIPW~eI~~V~a~V~fkgk~I 67 (118)
T PF06115_consen 46 IQIPWEEIDYVIASVSFKGKWI 67 (118)
T ss_pred EEeChhheeEEEEEEEECCCEE
Confidence 8999999987777777655444
No 12
>PRK13989 cell division topological specificity factor MinE; Provisional
Probab=29.53 E-value=60 Score=22.62 Aligned_cols=27 Identities=4% Similarity=0.036 Sum_probs=21.4
Q ss_pred hHHHHHHhhcccccCCcCCeeEEEecee
Q psy4290 5 SNQFCENEVAELQEFFRSTLQLHLWEGQ 32 (135)
Q Consensus 5 ~n~f~~~lg~Yienld~~qL~lsL~~G~ 32 (135)
.+-.++-+++|++ +|.+++++.+=++.
T Consensus 44 k~dil~VIsKYv~-Id~~~v~i~l~~~~ 70 (84)
T PRK13989 44 QKELVAVISKYVK-ISPDDIRVSLERQD 70 (84)
T ss_pred HHHHHHHHHHhee-eCccceEEEEEeCC
Confidence 4556677799997 99999999986654
No 13
>PHA03001 putative virion core protein; Provisional
Probab=29.52 E-value=47 Score=25.36 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=24.1
Q ss_pred hhHHHHHHhhcccccCCcCCeeEEEeceeE
Q psy4290 4 TSNQFCENEVAELQEFFRSTLQLHLWEGQA 33 (135)
Q Consensus 4 ~~n~f~~~lg~Yienld~~qL~lsL~~G~v 33 (135)
+.|.|++-|++|| .++++.+-+-+-.|++
T Consensus 35 a~~~fl~~L~kYi-~v~eStFylvvrd~di 63 (132)
T PHA03001 35 AINKFLELLKKYI-HVDKSTFYLVVKDKDI 63 (132)
T ss_pred HHHHHHHHHHhhE-EecccEEEEEEecCcE
Confidence 5789999999999 5999988887776643
No 14
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=26.36 E-value=1.1e+02 Score=28.25 Aligned_cols=63 Identities=14% Similarity=0.248 Sum_probs=47.8
Q ss_pred CCcCCeeEEEeceeEEEeeceec-HHHhhhcCCeEEeEEEEeEEEEEEecCCCCCccEEE---EeCceEEeee
Q psy4290 19 FFRSTLQLHLWEGQACFHNLELD-LEALESLVPFHFVSGHINELRIKVPWTSLGSSSVEV---VIDTIGYLSG 87 (135)
Q Consensus 19 ld~~qL~lsL~~G~v~L~nL~Lk-~daL~~llP~~v~~G~Ig~L~i~IPW~~L~s~pv~I---~I~~V~I~l~ 87 (135)
++-+.++++++.+.++++++.+- ++. |. =..-.++++++.+.+..|.+..++| .|+++.+.+.
T Consensus 45 V~Ig~V~lslfpl~l~i~gl~Vanp~~-----~~-~~~~~i~~i~~~v~l~pLL~~~vvI~~l~l~g~~v~l~ 111 (555)
T TIGR03545 45 VEIAQVDTGLFPLQLSIQGLQVTDPDK-----PM-RNLFEIDRINASLDWDALLRGKVVIEELAIEGLAFGTE 111 (555)
T ss_pred EEEeEEEeeecCCeEEEeeEEEeCCCC-----CC-CCeEEeeEEEEEeccHHHhcCCcEEeEEEEecCEEEEE
Confidence 44467999999999999999994 331 11 1135789999999999888887764 5888888764
No 15
>PRK13987 cell division topological specificity factor MinE; Provisional
Probab=25.33 E-value=42 Score=23.85 Aligned_cols=28 Identities=0% Similarity=0.029 Sum_probs=23.0
Q ss_pred hhHHHHHHhhcccccCCcCCeeEEEecee
Q psy4290 4 TSNQFCENEVAELQEFFRSTLQLHLWEGQ 32 (135)
Q Consensus 4 ~~n~f~~~lg~Yienld~~qL~lsL~~G~ 32 (135)
..|-.++-+++|++ +|.+++++.+=+++
T Consensus 40 lk~eIl~VI~kYv~-Id~~~v~i~l~~~~ 67 (91)
T PRK13987 40 IKEDILKVISKYVE-IDNEDVDIKMTKSE 67 (91)
T ss_pred HHHHHHHHHHHhee-eCccceEEEEEeCC
Confidence 45667778899997 99999999988754
No 16
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=22.34 E-value=93 Score=22.21 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=24.6
Q ss_pred HHHHHHhhcccccCCcCCeeEEEeceeEEEeeceec
Q psy4290 6 NQFCENEVAELQEFFRSTLQLHLWEGQACFHNLELD 41 (135)
Q Consensus 6 n~f~~~lg~Yienld~~qL~lsL~~G~v~L~nL~Lk 41 (135)
+-.++-+.+|++ +|.+.+++++-+|+ .+.=|+++
T Consensus 44 ~eIl~VI~KYV~-id~d~v~v~~e~~~-~~s~Le~n 77 (88)
T COG0851 44 KEILEVISKYVQ-IDPDKVEVSLERDD-RISILELN 77 (88)
T ss_pred HHHHHHHHHHhe-eCcccEEEEEcCCC-CeEEEEEe
Confidence 344566789995 99999999999887 44444443
No 17
>PRK00296 minE cell division topological specificity factor MinE; Reviewed
Probab=22.09 E-value=75 Score=22.20 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=20.8
Q ss_pred hHHHHHHhhcccccCCcCCeeEEEece
Q psy4290 5 SNQFCENEVAELQEFFRSTLQLHLWEG 31 (135)
Q Consensus 5 ~n~f~~~lg~Yienld~~qL~lsL~~G 31 (135)
.+...+.+++|++ +|.+++++.+=++
T Consensus 43 k~dIl~VIsKY~~-Id~~~v~i~l~~~ 68 (86)
T PRK00296 43 RKEILEVIAKYVQ-IDPDKVSVQLDKD 68 (86)
T ss_pred HHHHHHHHHHhee-cChhhEEEEEEeC
Confidence 4566777899997 9999999888654
No 18
>PF04441 Pox_VERT_large: Poxvirus early transcription factor (VETF), large subunit ; InterPro: IPR007532 The poxvirus early transcription factor (VETF), in addition to the viral RNA polymerase, is required for efficient transcription of early genes in vitro. VETF is a heterodimeric protein that binds specifically to early gene promoters. The heterodimer is comprised of an 82 kDa (this family) subunit and a 70 kDa subunit.; GO: 0045893 positive regulation of transcription, DNA-dependent
Probab=21.32 E-value=3.3e+02 Score=25.99 Aligned_cols=67 Identities=16% Similarity=0.332 Sum_probs=48.8
Q ss_pred CCcCCeeEEEece-----------eEEEeeceecHHHhhhc-CCeEEeEEEEeEEEEEEecCCCCCccEEEEeCceEEee
Q psy4290 19 FFRSTLQLHLWEG-----------QACFHNLELDLEALESL-VPFHFVSGHINELRIKVPWTSLGSSSVEVVIDTIGYLS 86 (135)
Q Consensus 19 ld~~qL~lsL~~G-----------~v~L~nL~Lk~daL~~l-lP~~v~~G~Ig~L~i~IPW~~L~s~pv~I~I~~V~I~l 86 (135)
+..++|++++|.- .+.++||+|=.+.+... +-.+-+.| .+..+|-....-+..+.+.+|-=++..
T Consensus 220 l~De~lnLsiwD~d~~laissDg~ti~in~v~lFT~ll~~~diqmerIK~---diTyki~l~TpitS~ikldietsFifv 296 (700)
T PF04441_consen 220 LNDESLNLSIWDDDGSLAISSDGDTITINNVKLFTDLLSDIDIQMERIKG---DITYKIYLSTPITSKIKLDIETSFIFV 296 (700)
T ss_pred EecCceeEEEEcCCCcEEEecCCCEEEEecHHHHHHHhhhhchhheeeec---ceEEEEEecCcccCceEEeEEeeEEEE
Confidence 4558999999962 56778888888888777 66666666 667777777666677888887776665
Q ss_pred ee
Q psy4290 87 GI 88 (135)
Q Consensus 87 ~~ 88 (135)
++
T Consensus 297 eT 298 (700)
T PF04441_consen 297 ET 298 (700)
T ss_pred Ee
Confidence 44
No 19
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=21.08 E-value=51 Score=24.58 Aligned_cols=18 Identities=28% Similarity=0.587 Sum_probs=14.7
Q ss_pred CccCceeeeecccccccC
Q psy4290 117 HSAPTAWCFKDRCTTTQA 134 (135)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~ 134 (135)
+.|||.+||--+++..|.
T Consensus 63 ~kAPTd~~F~~K~~~~q~ 80 (114)
T cd01259 63 YKSPTDYCFGFKAVGDQS 80 (114)
T ss_pred cCCCCCceEEEeccccCc
Confidence 579999999888877664
Done!