Query psy4290
Match_columns 135
No_of_seqs 106 out of 422
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 21:47:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kxo_A Cell division topologic 34.3 47 0.0016 22.6 3.9 27 4-31 43-69 (95)
2 3e0j_A DNA polymerase subunit 32.6 52 0.0018 28.5 4.7 56 70-126 334-393 (476)
3 3r9j_C MINE, cell division top 27.4 21 0.00071 23.7 1.0 26 5-31 32-57 (77)
4 3aab_A Putative uncharacterize 26.3 25 0.00084 24.1 1.3 24 16-39 42-66 (123)
5 3bh2_A ADC, AAD, acetoacetate 22.2 76 0.0026 24.3 3.5 37 27-66 195-234 (244)
6 2bol_A TSP36, small heat shock 22.0 1.8E+02 0.0061 23.5 5.9 63 16-78 120-198 (314)
7 2klr_A Alpha-crystallin B chai 19.2 77 0.0026 23.4 2.9 24 16-39 81-104 (175)
8 3bgt_A ADC, AAD, probable acet 15.5 1.6E+02 0.0053 22.4 3.9 38 27-67 196-236 (246)
9 3c8w_A Acetoacetate decarboxyl 14.9 1.6E+02 0.0055 22.5 3.9 37 28-67 207-246 (255)
10 1vr6_A Phospho-2-dehydro-3-deo 14.8 1E+02 0.0035 25.5 2.8 64 59-130 73-147 (350)
No 1
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=34.25 E-value=47 Score=22.64 Aligned_cols=27 Identities=4% Similarity=-0.065 Sum_probs=22.5
Q ss_pred hhHHHHHHhhcccccCCcCCeeEEEece
Q psy4290 4 TSNQFCENEVAELQEFFRSTLQLHLWEG 31 (135)
Q Consensus 4 ~~n~f~~~lg~Yienld~~qL~lsL~~G 31 (135)
..+..++.+++|++ +|.+++++++=++
T Consensus 43 lk~eIl~VIsKYv~-Id~~~v~V~l~~~ 69 (95)
T 2kxo_A 43 LRKALMEVLSKYVN-VSLDNIRISQEKQ 69 (95)
T ss_dssp HHHHHHHHHHHHSC-CCTTSEEEEEEEE
T ss_pred HHHHHHHHHHHhee-cchhheEEEEEeC
Confidence 35667788899997 9999999998875
No 2
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=32.56 E-value=52 Score=28.49 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=37.2
Q ss_pred CCCccEEEEeCceEEeeeecchhhhhHHhhhchhhHHHHHHHhcccCCccCce----eeee
Q psy4290 70 LGSSSVEVVIDTIGYLSGIFECMAAIHALNGRYATALQYAILLVPIGHSAPTA----WCFK 126 (135)
Q Consensus 70 L~s~pv~I~I~~V~I~l~~~~~~~~~~~~~~s~~~s~qlA~~~~~~~~~~~~~----~~~~ 126 (135)
+-+.|..++|+|+.++...-+.. .+.-.+..+...++......+-+|-+||| ||+-
T Consensus 334 ~vtNP~~~~i~G~~~LgtsGqni-dDi~ky~~~~~~l~~me~~LkwrHlAPTaPdTl~~yP 393 (476)
T 3e0j_A 334 LVTNPYQATIDGVRFLGTSGQNV-SDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYP 393 (476)
T ss_dssp ECCSSEEEEETTEEEEECSSHHH-HHHHHHSCCCCHHHHHHHHHHBTCSCTTSCCC-----
T ss_pred EeCCCeEEEECCEEEEEECCCCH-HHHHhcCCCCCHHHHHHHHHHHhccCCCCCCceeecc
Confidence 35779999999999887543222 22222234677888888999999999975 8864
No 3
>3r9j_C MINE, cell division topological specificity factor; ATPase, protein complex, bacterial cell division inhibitor; HET: ADP; 4.30A {Escherichia coli} PDB: 1ev0_A
Probab=27.36 E-value=21 Score=23.68 Aligned_cols=26 Identities=12% Similarity=0.020 Sum_probs=21.2
Q ss_pred hHHHHHHhhcccccCCcCCeeEEEece
Q psy4290 5 SNQFCENEVAELQEFFRSTLQLHLWEG 31 (135)
Q Consensus 5 ~n~f~~~lg~Yienld~~qL~lsL~~G 31 (135)
.+-.++-+++|++ +|.+++++++=++
T Consensus 32 k~eIl~VIsKYv~-Id~~~v~v~l~~~ 57 (77)
T 3r9j_C 32 RKDILEVICKYVQ-IDPEMVTVQLEQK 57 (77)
T ss_dssp HHHHTTGGGTTSC-CCCSCCCCEEEEE
T ss_pred HHHHHHHHHhhee-cCcccEEEEEEEc
Confidence 4556677799997 9999999998765
No 4
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=26.25 E-value=25 Score=24.09 Aligned_cols=24 Identities=8% Similarity=0.138 Sum_probs=19.9
Q ss_pred cccCCcCCeeEEEec-eeEEEeece
Q psy4290 16 LQEFFRSTLQLHLWE-GQACFHNLE 39 (135)
Q Consensus 16 ienld~~qL~lsL~~-G~v~L~nL~ 39 (135)
+-++++++++|.+-+ |.+.++--+
T Consensus 42 lPG~~~edi~V~v~~~~~L~I~g~~ 66 (123)
T 3aab_A 42 LAGFNKEKIKARVSGQNELIIEAER 66 (123)
T ss_dssp CCSCCGGGCEEEEETTTEEEEEEEC
T ss_pred CCCCCHHHEEEEEeCCCEEEEEEEE
Confidence 447899999999999 888887654
No 5
>3bh2_A ADC, AAD, acetoacetate decarboxylase; lyase, plasmid, schiff base; 2.40A {Clostridium acetobutylicum atcc 824}
Probab=22.16 E-value=76 Score=24.27 Aligned_cols=37 Identities=30% Similarity=0.456 Sum_probs=28.6
Q ss_pred EEeceeEEEeeceecHHHhhhc--CCe-EEeEEEEeEEEEEEe
Q psy4290 27 HLWEGQACFHNLELDLEALESL--VPF-HFVSGHINELRIKVP 66 (135)
Q Consensus 27 sL~~G~v~L~nL~Lk~daL~~l--lP~-~v~~G~Ig~L~i~IP 66 (135)
..|.|.+ .|+|...+++.+ ||+ +++.|+..+..++++
T Consensus 195 ~~w~G~a---~l~l~~h~~~pla~Lpv~~v~~a~~~~~d~t~~ 234 (244)
T 3bh2_A 195 EAWTGPT---RLQLFDHAMAPLNDLPVKEIVSSSHILADIILP 234 (244)
T ss_dssp EEEECCE---EEEECCCTTSCGGGSCCSEEEEEEEEEEEEECC
T ss_pred cEEEeeE---EEEEcCCCCCchhhCCccEEEEEEEEEEEEEeC
Confidence 4688876 455666777777 885 899999999888776
No 6
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=21.98 E-value=1.8e+02 Score=23.50 Aligned_cols=63 Identities=11% Similarity=0.151 Sum_probs=41.1
Q ss_pred cccCCcCCeeEEEeceeEEEeeceecHH--------Hhhhc-CCeEE----eEEEEe---EEEEEEecCCCCCccEEEE
Q psy4290 16 LQEFFRSTLQLHLWEGQACFHNLELDLE--------ALESL-VPFHF----VSGHIN---ELRIKVPWTSLGSSSVEVV 78 (135)
Q Consensus 16 ienld~~qL~lsL~~G~v~L~nL~Lk~d--------aL~~l-lP~~v----~~G~Ig---~L~i~IPW~~L~s~pv~I~ 78 (135)
+-+++++.++|.+-+|.+.++--+=.++ .-..+ ||-.| +.+... -|+|.+|-..-..+++.|+
T Consensus 120 lPG~~~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~~nGVL~I~lPK~~~~~~~I~it 198 (314)
T 2bol_A 120 VKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNEPNYKAIKLS 198 (314)
T ss_dssp CTTCCTTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEECSSSEEEEEEEBSSCCTTTEEEE
T ss_pred CCCCchHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEeCCCEEEEEEeccCcccceeecc
Confidence 3478999999999999999987653321 11222 77433 344444 8888898765555565554
No 7
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=19.18 E-value=77 Score=23.41 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=19.6
Q ss_pred cccCCcCCeeEEEeceeEEEeece
Q psy4290 16 LQEFFRSTLQLHLWEGQACFHNLE 39 (135)
Q Consensus 16 ienld~~qL~lsL~~G~v~L~nL~ 39 (135)
+-+++++.++|.+-+|.+.++--+
T Consensus 81 lPG~~~edI~V~v~~~~L~I~g~~ 104 (175)
T 2klr_A 81 VKHFSPEELKVKVLGDVIEVHGKH 104 (175)
T ss_dssp CSSCCGGGEEEEEETTEEEEEEEE
T ss_pred CCCCChHHEEEEEECCEEEEEEEE
Confidence 447889999999999988887643
No 8
>3bgt_A ADC, AAD, probable acetoacetate decarboxylase; lyase, schiff base; HET: MSE; 2.10A {Chromobacterium violaceum} PDB: 3bh3_A
Probab=15.46 E-value=1.6e+02 Score=22.44 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=28.9
Q ss_pred EEeceeEEEeeceecHHHhhhc--CCe-EEeEEEEeEEEEEEec
Q psy4290 27 HLWEGQACFHNLELDLEALESL--VPF-HFVSGHINELRIKVPW 67 (135)
Q Consensus 27 sL~~G~v~L~nL~Lk~daL~~l--lP~-~v~~G~Ig~L~i~IPW 67 (135)
..|.|.+ .|+|...+.+.+ ||+ +++.|+.....++++-
T Consensus 196 ~~w~G~a---~l~l~~~~~~pla~Lpv~~v~~a~~~~~d~t~~~ 236 (246)
T 3bgt_A 196 GAWSAPG---SLELHPHALAPVAALPVLEVLSARHFVCDLTLDL 236 (246)
T ss_dssp EEEECCE---EEEECCCTTCCGGGSCCSEEEEEEEEEEEEEECC
T ss_pred eEEEEEE---EEEEeCCCCCchhhCCccEEEEEEEEEEEEEeCC
Confidence 3677766 455667777777 885 8999999999888764
No 9
>3c8w_A Acetoacetate decarboxylase ADC; YP_094708.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; HET: LCK CIT; 1.60A {Legionella pneumophila subsp} SCOP: d.347.1.1
Probab=14.94 E-value=1.6e+02 Score=22.51 Aligned_cols=37 Identities=27% Similarity=0.457 Sum_probs=28.4
Q ss_pred EeceeEEEeeceecHHHhhhc--CCe-EEeEEEEeEEEEEEec
Q psy4290 28 LWEGQACFHNLELDLEALESL--VPF-HFVSGHINELRIKVPW 67 (135)
Q Consensus 28 L~~G~v~L~nL~Lk~daL~~l--lP~-~v~~G~Ig~L~i~IPW 67 (135)
.|.|.+ .|+|...+.+.+ ||+ +++.|+.....++++-
T Consensus 207 ~w~G~a---~l~l~~~~~~pLa~Lpv~~v~~a~~~~~d~tl~~ 246 (255)
T 3c8w_A 207 AWTGPG---SLELHPHALAPISNLYIKKIVSVSHFITDLTLPY 246 (255)
T ss_dssp EEECCE---EEEECCCTTCCGGGSCCSEEEEEEEEEEEEEECC
T ss_pred EEEEEE---EEEEcCCCCCchhhCCccEEEEEEEEEEEEEeCC
Confidence 677766 345667777777 885 8999999999888763
No 10
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=14.76 E-value=1e+02 Score=25.48 Aligned_cols=64 Identities=13% Similarity=0.215 Sum_probs=46.0
Q ss_pred eEEEEEEecCCC----CCccEEEEeCce-------EEeeeecchhhhhHHhhhchhhHHHHHHHhcccCCccCceeeeec
Q psy4290 59 NELRIKVPWTSL----GSSSVEVVIDTI-------GYLSGIFECMAAIHALNGRYATALQYAILLVPIGHSAPTAWCFKD 127 (135)
Q Consensus 59 g~L~i~IPW~~L----~s~pv~I~I~~V-------~I~l~~~~~~~~~~~~~~s~~~s~qlA~~~~~~~~~~~~~~~~~~ 127 (135)
.-++|.-||+.. ..++..|.+.++ +++++|.. .++...++++|...+.+|.......-||.
T Consensus 73 ~~~~i~~~~k~~sr~~~~~~~~i~i~~~~iG~~~~~vIAgpcs--------~es~e~a~~~a~~~k~aGa~~vr~q~fKp 144 (350)
T 1vr6_A 73 SVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCS--------VEGREMLMETAHFLSELGVKVLRGGAYKP 144 (350)
T ss_dssp EEEECSCSCCTTBTTTCCSCCCEECSSCEESTTEEEEEEECSB--------CCCHHHHHHHHHHHHHTTCCEEECBSCCC
T ss_pred eeccCCCChhhhhhhcCCcCCEEEECCEEECCCCeEEEEeCCC--------cCCHHHHHHHHHHHHHcCCCeeeeeEEeC
Confidence 456788899754 345677888764 44455532 56788999999999999988877777887
Q ss_pred ccc
Q psy4290 128 RCT 130 (135)
Q Consensus 128 ~~~ 130 (135)
|-+
T Consensus 145 rTs 147 (350)
T 1vr6_A 145 RTS 147 (350)
T ss_dssp CCS
T ss_pred CCC
Confidence 753
Done!