Query psy4290
Match_columns 135
No_of_seqs 106 out of 422
Neff 5.0
Searched_HMMs 13730
Date Fri Aug 16 21:47:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4290.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4290hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ev0a_ d.71.1.1 (A:) Cell div 20.8 20 0.0014 21.3 1.4 22 7-29 15-36 (58)
2 d1je5a_ b.40.4.7 (A:) gp2.5 {B 18.0 36 0.0026 23.9 2.6 49 38-86 123-179 (197)
3 d1i8aa_ b.1.9.2 (A:) Xylanase 17.2 36 0.0026 22.5 2.4 15 60-74 129-143 (189)
4 d3c8wa1 d.347.1.1 (A:5-254) Ac 15.1 75 0.0054 22.6 3.9 39 27-68 201-242 (250)
5 d1w25a3 d.58.29.2 (A:294-455) 14.8 17 0.0013 23.2 0.1 36 1-38 1-38 (162)
6 d2i9aa2 g.14.1.1 (A:50-132) Ur 14.5 29 0.0021 20.9 1.2 12 113-126 55-66 (83)
7 d1pmla_ g.14.1.1 (A:) Plasmino 14.3 30 0.0022 21.0 1.2 13 112-126 56-68 (86)
8 d1hl9a1 b.71.1.3 (A:357-448) P 14.1 11 0.00082 23.7 -1.0 51 32-82 39-91 (92)
9 d2eyqa5 c.37.1.19 (A:779-989) 13.7 47 0.0034 23.8 2.4 23 104-126 114-136 (211)
10 d1j8ba_ d.222.1.1 (A:) Hypothe 12.5 28 0.002 21.6 0.6 33 14-46 25-57 (92)
No 1
>d1ev0a_ d.71.1.1 (A:) Cell division protein MinE topological specificity domain {Escherichia coli [TaxId: 562]}
Probab=20.84 E-value=20 Score=21.27 Aligned_cols=22 Identities=14% Similarity=0.006 Sum_probs=17.9
Q ss_pred HHHHHhhcccccCCcCCeeEEEe
Q psy4290 7 QFCENEVAELQEFFRSTLQLHLW 29 (135)
Q Consensus 7 ~f~~~lg~Yienld~~qL~lsL~ 29 (135)
-.++-+.+|++ ++.+++++++=
T Consensus 15 eil~VI~KyV~-Id~d~v~V~le 36 (58)
T d1ev0a_ 15 DILEVICKYVQ-IDPEMVTVQLE 36 (58)
T ss_dssp HHHHHHHHHSC-CCGGGEEEEEE
T ss_pred HHHHHHHHhEe-ecHHHeEEEEe
Confidence 34556789996 99999999995
No 2
>d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]}
Probab=18.03 E-value=36 Score=23.89 Aligned_cols=49 Identities=12% Similarity=0.257 Sum_probs=36.3
Q ss_pred ceecHHHhhhc---CC--eEEeEEEEeEEEEEE-ecC--CCCCccEEEEeCceEEee
Q psy4290 38 LELDLEALESL---VP--FHFVSGHINELRIKV-PWT--SLGSSSVEVVIDTIGYLS 86 (135)
Q Consensus 38 L~Lk~daL~~l---lP--~~v~~G~Ig~L~i~I-PW~--~L~s~pv~I~I~~V~I~l 86 (135)
-..++.+++.- +| ..|-+|+.+++.+.+ ||. .-...-|.+.+..|+|+=
T Consensus 123 ~~~~P~i~Ds~~~~l~~~~~i~~Gs~~~v~~~~~py~~~~~~g~Gvsl~L~~VQvi~ 179 (197)
T d1je5a_ 123 KHINLVVVDSKGKKMEDVPIIGGGSKLKVKYSLVPYKWNTAVGASVKLQLESVMLVE 179 (197)
T ss_dssp EECCCCEECTTSCBCSSCCCCCTTCEEEEEEEEEEECCCSSCCBEEEEEEEEEEEEE
T ss_pred cccCCeEECCCCCCCCCCcccccCcEEEEEEEEeeeeeCCCCceEEEEEeeeEEEEE
Confidence 34567677665 43 568999999999875 874 444567999999999873
No 3
>d1i8aa_ b.1.9.2 (A:) Xylanase 10A {Thermotoga maritima [TaxId: 2336]}
Probab=17.21 E-value=36 Score=22.50 Aligned_cols=15 Identities=7% Similarity=0.459 Sum_probs=11.8
Q ss_pred EEEEEEecCCCCCcc
Q psy4290 60 ELRIKVPWTSLGSSS 74 (135)
Q Consensus 60 ~L~i~IPW~~L~s~p 74 (135)
.+++.|||+.|.-.+
T Consensus 129 ~~E~~IP~~~L~~~~ 143 (189)
T d1i8aa_ 129 IVEAAIKWKTIKPTP 143 (189)
T ss_dssp EEEEEEECSSCCCCT
T ss_pred EEEEEcchHhcCCCC
Confidence 488999999997444
No 4
>d3c8wa1 d.347.1.1 (A:5-254) Acetoacetate decarboxylase {Legionella pneumophila [TaxId: 446]}
Probab=15.12 E-value=75 Score=22.62 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=30.2
Q ss_pred EEeceeEEEeeceecHHHhhhc--CCe-EEeEEEEeEEEEEEecC
Q psy4290 27 HLWEGQACFHNLELDLEALESL--VPF-HFVSGHINELRIKVPWT 68 (135)
Q Consensus 27 sL~~G~v~L~nL~Lk~daL~~l--lP~-~v~~G~Ig~L~i~IPW~ 68 (135)
..|.|.++| +|.....+.+ ||+ +++.|+-.+..+.+|-.
T Consensus 201 ~~w~G~~~l---~l~~s~~dpla~Lpv~e~~~~~~~~~d~tl~~g 242 (250)
T d3c8wa1 201 GAWTGPGSL---ELHPHALAPISNLYIKKIVSVSHFITDLTLPYG 242 (250)
T ss_dssp EEEECCEEE---EECCCTTCCGGGSCCSEEEEEEEEEEEEEECCC
T ss_pred eEEEeeeEE---EECCCCCCchhhCCccEEEEEEEEEEEEEecCC
Confidence 478888754 5777888877 775 89999998888888744
No 5
>d1w25a3 d.58.29.2 (A:294-455) Response regulator PleD, C-terminal domain {Caulobacter crescentus [TaxId: 155892]}
Probab=14.85 E-value=17 Score=23.16 Aligned_cols=36 Identities=8% Similarity=-0.077 Sum_probs=23.0
Q ss_pred CCchhH--HHHHHhhcccccCCcCCeeEEEeceeEEEeec
Q psy4290 1 MTGTSN--QFCENEVAELQEFFRSTLQLHLWEGQACFHNL 38 (135)
Q Consensus 1 ~~~~~n--~f~~~lg~Yienld~~qL~lsL~~G~v~L~nL 38 (135)
|||+.| .|.+.|.++++.....+-.++|.- +.+.|+
T Consensus 1 LTGL~Nr~~f~~~l~~~l~~~~~~~~~~~l~~--i~id~~ 38 (162)
T d1w25a3 1 LTGLHNRRYMTGQLDSLVKRATLGGDPVSALL--IDIDFF 38 (162)
T ss_dssp TTCCBCHHHHHHHHHHHHHHHHTSSCCCEEEE--EEETTH
T ss_pred CCCchHHHHHHHHHHHHHHHHHhcCCCEEEEE--eccccc
Confidence 689887 477788888876554554555543 244554
No 6
>d2i9aa2 g.14.1.1 (A:50-132) Urokinase-type plasminogen activator {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.49 E-value=29 Score=20.85 Aligned_cols=12 Identities=33% Similarity=1.068 Sum_probs=8.1
Q ss_pred cccCCccCceeeee
Q psy4290 113 VPIGHSAPTAWCFK 126 (135)
Q Consensus 113 ~~~~~~~~~~~~~~ 126 (135)
-|.|..+| |||-
T Consensus 55 NP~~~~~P--WCy~ 66 (83)
T d2i9aa2 55 NPDNRRRP--WCYV 66 (83)
T ss_dssp CTTCBSSC--EEEE
T ss_pred CCCCCcCc--eeEE
Confidence 45666554 9995
No 7
>d1pmla_ g.14.1.1 (A:) Plasminogen {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.35 E-value=30 Score=20.99 Aligned_cols=13 Identities=31% Similarity=0.802 Sum_probs=8.5
Q ss_pred hcccCCccCceeeee
Q psy4290 112 LVPIGHSAPTAWCFK 126 (135)
Q Consensus 112 ~~~~~~~~~~~~~~~ 126 (135)
|-|.|.++ .|||-
T Consensus 56 RNP~g~~~--PWCy~ 68 (86)
T d1pmla_ 56 RNPDGDAK--PWCHV 68 (86)
T ss_dssp BCSSCCSS--CEEEE
T ss_pred cCCCCCcc--ceEEE
Confidence 35667654 59994
No 8
>d1hl9a1 b.71.1.3 (A:357-448) Putative alpha-L-fucosidase C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=14.06 E-value=11 Score=23.71 Aligned_cols=51 Identities=18% Similarity=0.359 Sum_probs=35.0
Q ss_pred eEEEeeceecHHHhhhcC-CeEEeEEEEe-EEEEEEecCCCCCccEEEEeCce
Q psy4290 32 QACFHNLELDLEALESLV-PFHFVSGHIN-ELRIKVPWTSLGSSSVEVVIDTI 82 (135)
Q Consensus 32 ~v~L~nL~Lk~daL~~ll-P~~v~~G~Ig-~L~i~IPW~~L~s~pv~I~I~~V 82 (135)
+++++||.|.....+.++ .-++..-.+| .|+|.+|=+-|.++++.+.++.|
T Consensus 39 kiviedlnlsagtvrhfltgerlsfknvgknleitvpkklletdsitlvleav 91 (92)
T d1hl9a1 39 KIVIEDLNLSAGTVRHFLTGERLSFKNVGKNLEITVPKKLLETDSITLVLEAV 91 (92)
T ss_dssp EEEETTCCCCSSEEEETTTCCEEEEEEETTEEEEECCHHHHTTCSSSCEEEEE
T ss_pred EEEEEEcccccceeeeeeccceeeecccCCceEEecchHHhccccEEEEEEec
Confidence 678888888876666662 2344444555 48899998878888877666543
No 9
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=13.72 E-value=47 Score=23.81 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.1
Q ss_pred hHHHHHHHhcccCCccCceeeee
Q psy4290 104 TALQYAILLVPIGHSAPTAWCFK 126 (135)
Q Consensus 104 ~s~qlA~~~~~~~~~~~~~~~~~ 126 (135)
.=.||-|++-..||++-.++||-
T Consensus 114 GLaQLhQLRGRVGR~~~~s~c~l 136 (211)
T d2eyqa5 114 GLAQLHQLRGRVGRSHHQAYAWL 136 (211)
T ss_dssp CHHHHHHHHTTCCBTTBCEEEEE
T ss_pred cccccccccceeeecCccceEEE
Confidence 44579999999999999999984
No 10
>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus influenzae [TaxId: 727]}
Probab=12.50 E-value=28 Score=21.55 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=22.3
Q ss_pred cccccCCcCCeeEEEeceeEEEeeceecHHHhh
Q psy4290 14 AELQEFFRSTLQLHLWEGQACFHNLELDLEALE 46 (135)
Q Consensus 14 ~Yienld~~qL~lsL~~G~v~L~nL~Lk~daL~ 46 (135)
..|+.-+.+.+---..+|+-.+.+++|++++++
T Consensus 25 ~~v~~~sg~g~V~V~~~G~~~v~~i~Id~~~l~ 57 (92)
T d1j8ba_ 25 LEVTGESGAGLVKITINGAHNCRRIDIDPSLME 57 (92)
T ss_dssp SEEEEEEGGGTEEEEEETTCCEEEEEECGGGGG
T ss_pred eEEEEEECCCEEEEEEECCeEEEEEEECHHHhc
Confidence 344444444333335689999999999999885
Done!