RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4290
         (135 letters)



>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga
          maritima [TaxId: 2336]}
          Length = 295

 Score = 24.1 bits (51), Expect = 6.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 35 FHNLELDLEALESLVPFHFVSG 56
          F N ELDLE+ E LV +   +G
Sbjct: 14 FKNGELDLESYERLVRYQLENG 35


>g1cp9.1 d.153.1.2 (A:,B:) Penicillin acylase {Providencia rettgeri
           [TaxId: 587]}
          Length = 750

 Score = 24.2 bits (51), Expect = 7.3
 Identities = 5/34 (14%), Positives = 10/34 (29%)

Query: 92  MAAIHALNGRYATALQYAILLVPIGHSAPTAWCF 125
              +H           +A   +  GH+   +W  
Sbjct: 231 GIGLHGAGFNIVGNTPFAYPAILFGHNGHVSWGS 264


>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId:
          7242]}
          Length = 107

 Score = 23.4 bits (50), Expect = 8.3
 Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 4/42 (9%)

Query: 15 ELQEFFRSTLQLHLW----EGQACFHNLELDLEALESLVPFH 52
          +LQ + R       W    E      +       +E+L+  H
Sbjct: 4  DLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKH 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0419    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 497,987
Number of extensions: 20553
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 7
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)