Query psy4292
Match_columns 155
No_of_seqs 204 out of 1146
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 21:49:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4389|consensus 99.9 5.5E-25 1.2E-29 186.2 10.0 120 3-152 391-513 (601)
2 cd00312 Esterase_lipase Estera 99.8 5.7E-20 1.2E-24 157.5 11.5 116 5-152 348-465 (493)
3 PF00135 COesterase: Carboxyle 99.7 3.3E-18 7.2E-23 146.5 8.0 114 5-149 382-497 (535)
4 COG2272 PnbA Carboxylesterase 99.6 4.6E-15 1E-19 126.6 10.6 100 24-152 350-449 (491)
5 KOG1516|consensus 98.9 1.4E-08 3E-13 88.5 10.8 117 5-153 384-505 (545)
6 COG4564 Signal transduction hi 20.7 2.7E+02 0.0058 23.9 5.3 32 4-38 60-91 (459)
7 PF10555 MraY_sig1: Phospho-N- 14.9 87 0.0019 13.6 0.6 7 66-72 2-8 (13)
8 PF03369 Herpes_UL3: Herpesvir 12.8 1.9E+02 0.0041 20.9 2.2 17 74-90 108-124 (134)
9 PF09936 Methyltrn_RNA_4: SAM- 12.8 2.7E+02 0.0058 21.4 3.2 26 126-151 51-77 (185)
10 cd02639 R3H_RRM R3H domain of 12.0 2.8E+02 0.0062 17.1 2.7 19 122-140 23-41 (60)
No 1
>KOG4389|consensus
Probab=99.92 E-value=5.5e-25 Score=186.16 Aligned_cols=120 Identities=32% Similarity=0.609 Sum_probs=106.7
Q ss_pred chHHHHHhhhcCCC--CCCCChHHH-HHHHHHHhcccceechHHHHHHHhcchhhhccCCCCCCCCCCCCCCCCCCCCCc
Q psy4292 3 FNANSVINEYTDWE--RTILHPINT-RDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGNGTSGAPNPPSSPGHTK 79 (155)
Q Consensus 3 ~~~~~v~~~Y~~~~--~~~~~~~~~-~~~~~~~~sD~~f~~p~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (155)
+.+++++.+|.+|. ++ ..+.+. ++++.++++|..|+||+..+|++++.. +++
T Consensus 391 ~~r~a~~~~ytd~~~~~~-~~p~~~y~~~~~~~vGDyfFtC~~~e~A~~~~~~------------------------g~~ 445 (601)
T KOG4389|consen 391 LAREAIKFHYTDWHVLDP-GRPERLYREALGDVVGDYFFTCPVNEFADALAEQ------------------------GAS 445 (601)
T ss_pred HHHHHHHHhcCchhhcCc-cchhhhHHHHHHHhhcceeeecCHHHHHHHHHHh------------------------cCc
Confidence 45788999999984 33 344443 799999999999999999999999775 588
Q ss_pred eEEEEecccCCCCCCCCCCCCCcccchhhhhCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCC
Q psy4292 80 SYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRNFTKSEVALSEAFILYLSNFARTGARDHH 152 (155)
Q Consensus 80 vy~Y~f~~~~~~~~~p~~~Ga~H~~dl~ylFg~~~~~~~~~~~~~~t~~d~~ls~~m~~~w~nFak~GnPn~~ 152 (155)
||+|.|.|+.+.++||.|||+.||.||.|+||.|+.. ...++++|+.+|++||++|+||||+|+||..
T Consensus 446 v~~YyFthrsSa~pWP~WmGVmHGYEIEyvFG~PL~~-----s~nYt~~E~~ls~rim~~WanFAktG~P~~~ 513 (601)
T KOG4389|consen 446 VYYYYFTHRSSANPWPKWMGVMHGYEIEYVFGIPLNY-----SRNYTKEEKILSRRIMRYWANFAKTGDPNER 513 (601)
T ss_pred EEEEEEeccccCCCchhhhcCcccceEEEEecccccc-----cccccHHHHHHHHHHHHHHHHHhhcCCCccC
Confidence 9999999999999999999999999999999999864 3689999999999999999999999999865
No 2
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.82 E-value=5.7e-20 Score=157.55 Aligned_cols=116 Identities=27% Similarity=0.524 Sum_probs=94.5
Q ss_pred HHHHHhhhcCCCCCCCChHHHHHHHHHHhcccceechHHHHHHHhcchhhhccCCCCCCCCCCCCCCCCCCCCCceEEEE
Q psy4292 5 ANSVINEYTDWERTILHPINTRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGNGTSGAPNPPSSPGHTKSYFYV 84 (155)
Q Consensus 5 ~~~v~~~Y~~~~~~~~~~~~~~~~~~~~~sD~~f~~p~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vy~Y~ 84 (155)
.++|++.|..+.. .....++.+.++++|..|.||+...++.+++. .+.+||+|+
T Consensus 348 ~~~i~~~Y~~~~~---~~~~~~~~~~~l~sD~~f~~P~~~~a~~~~~~-----------------------~~~~vY~Y~ 401 (493)
T cd00312 348 ADKVLEKYPGDVD---DSVESRKNLSDMLTDLLFKCPARYFLAQHRKA-----------------------GGSPVYAYV 401 (493)
T ss_pred HHHHHHHccCCCC---CcHHHHHHHHHHhhcccchhHHHHHHHHHHhc-----------------------cCCCeEEEE
Confidence 4678888986543 24567888999999999999999988887763 157999999
Q ss_pred ecccCCCCC--CCCCCCCCcccchhhhhCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCC
Q psy4292 85 FDYQTKDGD--YPQRMGTAHGEELPYIFGAPLIDGFSHFPRNFTKSEVALSEAFILYLSNFARTGARDHH 152 (155)
Q Consensus 85 f~~~~~~~~--~p~~~Ga~H~~dl~ylFg~~~~~~~~~~~~~~t~~d~~ls~~m~~~w~nFak~GnPn~~ 152 (155)
|+|.++... .+.+.|++|++||+|+|+.+... ...+++|+++++.|+++|+||||+||||..
T Consensus 402 F~~~~~~~~~~~~~~~Ga~H~~Dl~ylFg~~~~~------~~~~~~d~~ls~~m~~~w~nFaktGnPn~~ 465 (493)
T cd00312 402 FDHRSSLSVGRWPPWLGTVHGDEIFFVFGNPLLK------EGLREEEEKLSRTMMKYWANFAKTGNPNTE 465 (493)
T ss_pred eccCCcCCccccCCCCCcccCCceeeecCCCCCC------CCCCcHHHHHHHHHHHHHHHHhhhCCCCCC
Confidence 999876532 35678999999999999987542 134578999999999999999999999975
No 3
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=99.74 E-value=3.3e-18 Score=146.48 Aligned_cols=114 Identities=30% Similarity=0.537 Sum_probs=92.7
Q ss_pred HHHHHhhhcCCCCCCCChHHHHHHHHHHhcccceechHHHHHHHhcchhhhccCCCCCCCCCCCCCCCCCCCCCceEEEE
Q psy4292 5 ANSVINEYTDWERTILHPINTRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGNGTSGAPNPPSSPGHTKSYFYV 84 (155)
Q Consensus 5 ~~~v~~~Y~~~~~~~~~~~~~~~~~~~~~sD~~f~~p~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vy~Y~ 84 (155)
.+.+...|..+.+. .....++.+.++++|..|.||....+..+++. +.++|+|+
T Consensus 382 ~~~i~~~Y~~~~~~--~~~~~~~~~~~~~sD~~f~~p~~~~~~~~~~~------------------------~~~vY~Y~ 435 (535)
T PF00135_consen 382 ADAIKEFYPDDPDP--NDSDSRDRLAQLLSDIFFTCPARRAANHLASG------------------------GSPVYLYR 435 (535)
T ss_dssp HHHHHHHHSSTTST--THHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT------------------------TSCEEEEE
T ss_pred chhhhccccccccc--cchhhhHHHhhccCcceeeecccccccccccc------------------------ccccceee
Confidence 67889999987542 44555688999999999999966666665553 68899999
Q ss_pred ecccCC--CCCCCCCCCCCcccchhhhhCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCCC
Q psy4292 85 FDYQTK--DGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRNFTKSEVALSEAFILYLSNFARTGAR 149 (155)
Q Consensus 85 f~~~~~--~~~~p~~~Ga~H~~dl~ylFg~~~~~~~~~~~~~~t~~d~~ls~~m~~~w~nFak~GnP 149 (155)
|+|..+ ....+.+.|++|++||+|+|+.+.... ...+++|+++++.|+++|+||||+|+|
T Consensus 436 F~~~~~~~~~~~~~~~ga~H~~Dl~ylFg~~~~~~-----~~~~~~~~~ls~~m~~~w~nFak~G~P 497 (535)
T PF00135_consen 436 FDYPPPFIFSPDPPWRGACHGDDLPYLFGNPFLSP-----PNPTEDDRKLSDQMQRYWTNFAKTGNP 497 (535)
T ss_dssp EHHSSTTSTECSETTGTSBTTTTHHHHTTGCCHCH-----HHTCHHHHHHHHHHHHHHHHHHHHSST
T ss_pred cccccccccccccccccccchhhhhhhcCCCcccc-----cccccHHHHHHHHHHHHHHhcCCCCCC
Confidence 999988 333456889999999999999986542 123789999999999999999999999
No 4
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=99.61 E-value=4.6e-15 Score=126.55 Aligned_cols=100 Identities=25% Similarity=0.378 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcccceechHHHHHHHhcchhhhccCCCCCCCCCCCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCcc
Q psy4292 24 NTRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGNGTSGAPNPPSSPGHTKSYFYVFDYQTKDGDYPQRMGTAHG 103 (155)
Q Consensus 24 ~~~~~~~~~~sD~~f~~p~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vy~Y~f~~~~~~~~~p~~~Ga~H~ 103 (155)
.......++++|..|.||+++.++.++. +.++|+|+|+|.+... .+...||+|+
T Consensus 350 ~~~~~~~~~~tD~~F~~p~~~~a~a~~~-------------------------~ap~w~Yrf~~~~~~~-~~~~~gA~H~ 403 (491)
T COG2272 350 AAAAAFGALVTDRLFKAPSIRLAQAQSA-------------------------GAPTWLYRFDYAPDTV-RVPGFGAPHA 403 (491)
T ss_pred hhHHHHHHHhhcceecchHHHHHHhccc-------------------------CCCeeEEEeccCCccc-ccccCCCccc
Confidence 3455677899999999999999999884 5899999999997332 2357899999
Q ss_pred cchhhhhCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCC
Q psy4292 104 EELPYIFGAPLIDGFSHFPRNFTKSEVALSEAFILYLSNFARTGARDHH 152 (155)
Q Consensus 104 ~dl~ylFg~~~~~~~~~~~~~~t~~d~~ls~~m~~~w~nFak~GnPn~~ 152 (155)
.||.++||+..... .....+..+++++++|..+|+||||+|+||..
T Consensus 404 ~El~~Vfg~~~~~~---~~~~~~~~~~~~s~~~~~~w~nFArtg~p~~~ 449 (491)
T COG2272 404 TELSLVFGNLVALG---SAAQTARATAKLSRQMQDAWANFARTGSPNGL 449 (491)
T ss_pred cceeeeeccccccc---cccccchHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999976221 12345677789999999999999999999964
No 5
>KOG1516|consensus
Probab=98.89 E-value=1.4e-08 Score=88.48 Aligned_cols=117 Identities=21% Similarity=0.233 Sum_probs=86.9
Q ss_pred HHHHHhhhcCCCCCCCChHHHHHHHHHHhcccceechHHHHHHHhcchhhhccCCCCCCCCCCCCCCCCCCCCCceEEEE
Q psy4292 5 ANSVINEYTDWERTILHPINTRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGNGTSGAPNPPSSPGHTKSYFYV 84 (155)
Q Consensus 5 ~~~v~~~Y~~~~~~~~~~~~~~~~~~~~~sD~~f~~p~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vy~Y~ 84 (155)
...+...|+.................++.+|..|..++...+....+. ..++|+|.
T Consensus 384 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------------------~~~~~~y~ 439 (545)
T KOG1516|consen 384 ISVLKAYYLKDSAGSKEFGYSLTSLSDIVSDLLFNFGTHRLLRLRREY------------------------GNPVYLYS 439 (545)
T ss_pred HHHHHHHhccccCchhhhhhhHHHHHHHhhhhheeccHHHHHHHHHhc------------------------CCCeEEEE
Confidence 345566776543321112226678899999999999999999988874 37999999
Q ss_pred ecccCCCCCC-----CCCCCCCcccchhhhhCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q psy4292 85 FDYQTKDGDY-----PQRMGTAHGEELPYIFGAPLIDGFSHFPRNFTKSEVALSEAFILYLSNFARTGARDHHP 153 (155)
Q Consensus 85 f~~~~~~~~~-----p~~~Ga~H~~dl~ylFg~~~~~~~~~~~~~~t~~d~~ls~~m~~~w~nFak~GnPn~~~ 153 (155)
|++..+.... ....++.|++|+.|+|+...... ....+..|.++ +.+|++||++||||...
T Consensus 440 f~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~fa~~g~p~~~~ 505 (545)
T KOG1516|consen 440 FDYDNPVNFGRPGEKDPDTGVEHADDLRYLFGENFLKR----PVMKSSFEKKL----IELWTNFAKTGNPNGTD 505 (545)
T ss_pred EEecCcccccccccccCccCCcccccceeecccccccc----CCCCChHHHHH----HHHHHHHHhhCCCCCCC
Confidence 9998765433 34569999999999999865432 13445666666 99999999999999753
No 6
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=20.74 E-value=2.7e+02 Score=23.93 Aligned_cols=32 Identities=9% Similarity=0.108 Sum_probs=20.4
Q ss_pred hHHHHHhhhcCCCCCCCChHHHHHHHHHHhcccce
Q psy4292 4 NANSVINEYTDWERTILHPINTRDATIAAISDAQY 38 (155)
Q Consensus 4 ~~~~v~~~Y~~~~~~~~~~~~~~~~~~~~~sD~~f 38 (155)
+.+.|...|-.. ..+..+.++.+-.++++..|
T Consensus 60 A~sAIr~v~~~a---g~sdeaak~evk~iLt~ldy 91 (459)
T COG4564 60 ALSAIRLVYNNA---GPSDEAAKQEVKAILTNLDY 91 (459)
T ss_pred HHHHHHHHHhcC---CCChHHHHHHHHHHHhhccc
Confidence 556777777642 13556777777777776544
No 7
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=14.90 E-value=87 Score=13.57 Aligned_cols=7 Identities=43% Similarity=0.643 Sum_probs=3.3
Q ss_pred CCCCCCC
Q psy4292 66 SGAPNPP 72 (155)
Q Consensus 66 ~~~~~~~ 72 (155)
+|+|.|+
T Consensus 2 ~gTPTMG 8 (13)
T PF10555_consen 2 SGTPTMG 8 (13)
T ss_pred CCCccce
Confidence 3455554
No 8
>PF03369 Herpes_UL3: Herpesvirus UL3 protein; InterPro: IPR005035 Herpes simplex viruses are large DNA viruses, the genome of which encode approximately 80 genes. The UL3 gene of Human herpesvirus 2 (HHV-2) is predicted to encode a 233 amino acid protein with a molecular mass of 26 kDa. Homologues of the UL3 protein are encoded only among alphaherpesviruses. The function of the UL3 protein of Herpes simplex viruses remains unknown but it is known to localize to the nucleus and is a phosphoprotein [].
Probab=12.76 E-value=1.9e+02 Score=20.88 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=12.8
Q ss_pred CCCCCceEEEEecccCC
Q psy4292 74 SPGHTKSYFYVFDYQTK 90 (155)
Q Consensus 74 ~~~~~~vy~Y~f~~~~~ 90 (155)
+....|||+|+|....+
T Consensus 108 t~P~VPVfv~EF~a~~p 124 (134)
T PF03369_consen 108 THPAVPVFVYEFSAVDP 124 (134)
T ss_pred cCCcceEEEEEEeccCc
Confidence 44468999999987654
No 9
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=12.76 E-value=2.7e+02 Score=21.45 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHHHH-hhhcCCCCC
Q psy4292 126 TKSEVALSEAFILYLSN-FARTGARDH 151 (155)
Q Consensus 126 t~~d~~ls~~m~~~w~n-Fak~GnPn~ 151 (155)
-+..++|.++++.+|.. +-..-||+-
T Consensus 51 l~~Q~~l~~ril~hW~~G~G~~yNp~R 77 (185)
T PF09936_consen 51 LEAQRELAERILGHWQEGYGAEYNPDR 77 (185)
T ss_dssp -HHHHHHHHHHHHHHHTSGGGGT-SSS
T ss_pred hHHHHHHHHHHHHhcccCCCcCcCcCH
Confidence 46888999999999997 666667764
No 10
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=12.05 E-value=2.8e+02 Score=17.09 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy4292 122 PRNFTKSEVALSEAFILYL 140 (155)
Q Consensus 122 ~~~~t~~d~~ls~~m~~~w 140 (155)
+.+.++.++++...+.+.+
T Consensus 23 p~~ls~~eRriih~la~~l 41 (60)
T cd02639 23 PSSLSPAERRIVHLLASRL 41 (60)
T ss_pred CCCCCHHHHHHHHHHHHHc
Confidence 4578999999999988766
Done!