RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4292
(155 letters)
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 78.5 bits (194), Expect = 1e-17
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 34/146 (23%)
Query: 5 ANSVINEYTDWERTILHPINTRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGNG 64
A+++ EYTD +RDA + +SD +V P+ L+
Sbjct: 355 ADALKEEYTDDPDDN--SEESRDALVDLLSDYLFVCPIRLAAARLAS------------- 399
Query: 65 TSGAPNPPSSPGHTKSYFYVFDYQTKDGD---YPQRMGTAHGEELPYIFGAPLIDGFSHF 121
+ Y Y FDY++ +P MG +HG++LPY+FG PL+
Sbjct: 400 -----------AGSPVYLYRFDYRSSGSINKLWPPWMGVSHGDDLPYVFGNPLM-----R 443
Query: 122 PRNFTKSEVALSEAFILYLSNFARTG 147
+++ E LS + Y +NFA+TG
Sbjct: 444 KLLYSEEEEILSRRMMGYWTNFAKTG 469
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 57.0 bits (138), Expect = 3e-10
Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 34/146 (23%)
Query: 4 NANSVINEYTDWERTILHPINTRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGN 63
A+ V+ +Y + +R ++D + P L Q G+
Sbjct: 347 LADKVLEKYPGDVDD---SVESRKNLSDMLTDLLFKCPARY--------FLAQHRKAGGS 395
Query: 64 GTSGAPNPPSSPGHTKSYFYVFDY--QTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHF 121
Y YVFD+ G +P +GT HG+E+ ++FG PL
Sbjct: 396 PV---------------YAYVFDHRSSLSVGRWPPWLGTVHGDEIFFVFGNPL------L 434
Query: 122 PRNFTKSEVALSEAFILYLSNFARTG 147
+ E LS + Y +NFA+TG
Sbjct: 435 KEGLREEEEKLSRTMMKYWANFAKTG 460
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 35.5 bits (82), Expect = 0.006
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 78 TKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRNFTKSEVALSEAFI 137
++ Y FDY P G H EL +FG ++ LS
Sbjct: 379 APTWLYRFDYAPDTVRVPGF-GAPHATELSLVFG---NLVALGSAAQTARATAKLSRQMQ 434
Query: 138 LYLSNFARTGARD 150
+NFARTG+ +
Sbjct: 435 DAWANFARTGSPN 447
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 31.6 bits (72), Expect = 0.15
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 40 APLVQIGDLLSRPQLLQSGGGAGNGTSGAPNPPSSPG 76
AP + +LL R + L+ G A + P++P
Sbjct: 362 APGAPVSELLDRLEALERGAPAPPSAAWGAPTPAAPA 398
>gnl|CDD|223700 COG0627, COG0627, Predicted esterase [General function prediction
only].
Length = 316
Score = 28.9 bits (65), Expect = 0.91
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 65 TSGAPNPPSSPGHTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRN 124
+G P + FY Q P + T +ELP ++ + FP +
Sbjct: 96 GAGVNISVVMPLGGGASFYSDWTQPPWASGPYQWETFLTQELPALW-------EAAFPAD 148
Query: 125 FTKSEVA 131
T A
Sbjct: 149 GTGDGRA 155
>gnl|CDD|128877 smart00615, EPH_lbd, Ephrin receptor ligand binding domain.
Length = 177
Score = 28.0 bits (63), Expect = 1.4
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 70 NPPSSPGHTKSYFYVFDYQTKDGDYPQRM 98
+ P G K F ++ Y++ +
Sbjct: 80 SLPGVGGSCKETFNLYYYESDTDTATNTL 108
>gnl|CDD|132739 cd06941, NR_LBD_DmE78_like, The ligand binding domain of Drosophila
ecdysone-induced protein 78, a member of the nuclear
receptor superfamily. The ligand binding domain (LBD)
of Drosophila ecdysone-induced protein 78 (E78) like:
Drosophila ecdysone-induced protein 78 (E78) is a
transcription factor belonging to the nuclear receptor
superfamily. E78 is a product of the ecdysone-inducible
gene found in an early late puff locus at position 78C
during the onset of Drosophila metamorphosis. Two
isoforms of E78, E78A and E78B, are expressed from two
nested transcription units. An E78 orthologue from the
Platyhelminth Schistosoma mansoni (SmE78) has also been
identified. It is the first E78 orthologue known outside
of the molting animals--the Ecdysozoa. SmE78 may be
involved in transduction of an ecdysone signal in S.
mansoni, consistent with its function in Drosophila.
Like other members of the nuclear receptor (NR)
superfamily of ligand-activated transcription factors,
E78-like receptors have a central well conserved DNA
binding domain (DBD), a variable N-terminal domain, a
non-conserved hinge and a C-terminal ligand binding
domain (LBD).
Length = 195
Score = 27.4 bits (61), Expect = 3.2
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 98 MGTAHG-----EELPYIFGAPLIDGFSHFPRNF-----TKSEVALSEAFILYLSN 142
+ G ++L I+ + + F +F + +EVAL A +L +
Sbjct: 63 ITFDDGISISRQQLDIIYDSDFVKALFEFSDSFNSLGLSDTEVALFCAVVLLSPD 117
>gnl|CDD|218749 pfam05788, Orbi_VP1, Orbivirus RNA-dependent RNA polymerase (VP1).
This family consists of the RNA-dependent RNA polymerase
protein VP1 from the Orbiviruses. VP1 may have both
enzymatic and structural roles in the virus life cycle.
Length = 1301
Score = 27.4 bits (61), Expect = 3.4
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 114 LIDGFSHFPRNFTKSEVALSEAFILYLS 141
++D F +P TK+E+ +A +LY S
Sbjct: 1213 MVDRFIRYPHELTKTEL---DAVVLYCS 1237
>gnl|CDD|183215 PRK11587, PRK11587, putative phosphatase; Provisional.
Length = 218
Score = 26.1 bits (58), Expect = 7.2
Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 96 QRMGTAHGEELPYIFGAPLIDGFSHFPRNFTKSEVALSEAFIL 138
R G A E L +I G I HF SE + F
Sbjct: 30 DRHGIAPDEVLNFIHGKQAITSLRHFMAG--ASEAEIQAEFTR 70
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.415
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,136,722
Number of extensions: 735281
Number of successful extensions: 644
Number of sequences better than 10.0: 1
Number of HSP's gapped: 636
Number of HSP's successfully gapped: 18
Length of query: 155
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 66
Effective length of database: 6,990,096
Effective search space: 461346336
Effective search space used: 461346336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.9 bits)