RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4292
(155 letters)
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 119 bits (300), Expect = 2e-32
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 25/143 (17%)
Query: 5 ANSVINEYTDWERTILHPINTRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGNG 64
++ YTDW +P R +A +D Q+VAP V DL S
Sbjct: 383 RETIKFMYTDWADRH-NPETRRKTLLALFTDHQWVAPAVATADLHSN------------- 428
Query: 65 TSGAPNPPSSPGHTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRN 124
G+P +YFY F + + P AHG+E+PY+ G P+I FP N
Sbjct: 429 -FGSP----------TYFYAFYHHCQTDQVPAWADAAHGDEVPYVLGIPMIGPTELFPCN 477
Query: 125 FTKSEVALSEAFILYLSNFARTG 147
F+K++V LS + Y +NFA+TG
Sbjct: 478 FSKNDVMLSAVVMTYWTNFAKTG 500
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 105 bits (265), Expect = 1e-27
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 30/143 (20%)
Query: 5 ANSVINEYTDWERTILHPINTRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGNG 64
++V +YTDW + I RD + D + PL+ + ++ GNG
Sbjct: 368 LDAVTLQYTDWMDDN-NGIKNRDGLDDIVGDHNVICPLMHFVNKYTK---------FGNG 417
Query: 65 TSGAPNPPSSPGHTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRN 124
T Y Y F+++ + +P+ MG HG E+ ++FG PL+ N
Sbjct: 418 T---------------YLYFFNHRASNLVWPEWMGVIHGYEIEFVFGLPLVK-----ELN 457
Query: 125 FTKSEVALSEAFILYLSNFARTG 147
+T E ALS + Y + FA+TG
Sbjct: 458 YTAEEEALSRRIMHYWATFAKTG 480
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 105 bits (264), Expect = 2e-27
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 30/143 (20%)
Query: 5 ANSVINEYTDWERTILHPINTRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGNG 64
A +V+ YTDW P + RDA A + D V P+ Q+ L+
Sbjct: 375 AEAVVLHYTDWLHPE-DPTHLRDAMSAVVGDHNVVCPVAQLAGRLAA------------- 420
Query: 65 TSGAPNPPSSPGHTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRN 124
+ Y Y+F+++ +P MG HG E+ +IFG PL N
Sbjct: 421 -----------QGARVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDP-----SLN 464
Query: 125 FTKSEVALSEAFILYLSNFARTG 147
+T E ++ + Y +NFARTG
Sbjct: 465 YTTEERIFAQRLMKYWTNFARTG 487
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 102 bits (255), Expect = 3e-26
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 30/143 (20%)
Query: 5 ANSVINEYTDWERTILHPINTRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGNG 64
S++ YTDW P N R+A + D ++ P ++ S
Sbjct: 366 KESILFHYTDWVDDQ-RPENYREALGDVVGDYNFICPALEFTKKFSE------------- 411
Query: 65 TSGAPNPPSSPGHTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRN 124
G ++FY F++++ +P+ MG HG E+ ++FG PL
Sbjct: 412 -WGNN----------AFFYYFEHRSSKLPWPEWMGVMHGYEIEFVFGLPL-----ERRDQ 455
Query: 125 FTKSEVALSEAFILYLSNFARTG 147
+TK+E LS + + +NFA+ G
Sbjct: 456 YTKAEEILSRSIVKRWANFAKYG 478
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 101 bits (253), Expect = 5e-26
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 31/141 (21%)
Query: 7 SVINEYTDWERTILHPINTRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGNGTS 66
++I +YT WE + A+ D + P + L+
Sbjct: 411 AIIFQYTSWEGN--PGYQNQQQIGRAVGDHFFTCPTNEYAQALAE--------------R 454
Query: 67 GAPNPPSSPGHTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRNFT 126
GA ++Y F ++T + + MG HG+E+ Y FG PL + +
Sbjct: 455 GAS----------VHYYYFTHRTSTSLWGEWMGVLHGDEIEYFFGQPLNN-----SLQYR 499
Query: 127 KSEVALSEAFILYLSNFARTG 147
E L + + + FA+TG
Sbjct: 500 PVERELGKRMLSAVIEFAKTG 520
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 98.2 bits (245), Expect = 8e-25
Identities = 29/143 (20%), Positives = 49/143 (34%), Gaps = 27/143 (18%)
Query: 5 ANSVINEYTDWERTILHPINTRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGNG 64
A + YT+ + + +D ++ P
Sbjct: 360 AQATYEVYTEPWAQDSSQETRKKTMVDLETDILFLIPTKIAVAQHKS---------HAKS 410
Query: 65 TSGAPNPPSSPGHTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRN 124
+Y Y+F ++ YP+ MG H ++L Y+FG P P
Sbjct: 411 A-------------NTYTYLFSQPSRMPIYPKWMGADHADDLQYVFGKPFA-----TPLG 452
Query: 125 FTKSEVALSEAFILYLSNFARTG 147
+ + +S+A I Y +NFARTG
Sbjct: 453 YRAQDRTVSKAMIAYWTNFARTG 475
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 90.2 bits (224), Expect = 4e-22
Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 35/145 (24%)
Query: 5 ANSVINEYTDWERTILHPINTRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGNG 64
+Y + +D + I+D + P V +
Sbjct: 377 IPEATEKYLGGTD---DTVKKKDLFLDLIADVMFGVPSVIVARNHRD------------- 420
Query: 65 TSGAPNPPSSPGHTKSYFYVFDYQTK--DGDYPQRMGTAHGEELPYIFGAPLIDGFSHFP 122
+GAP +Y Y F Y+ P+ + HG+EL +FGAP
Sbjct: 421 -AGAP----------TYMYEFQYRPSFSSDMKPKTVIGDHGDELFSVFGAPF------LK 463
Query: 123 RNFTKSEVALSEAFILYLSNFARTG 147
++ E+ LS+ + + +NFAR G
Sbjct: 464 EGASEEEIRLSKMVMKFWANFARNG 488
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 76.6 bits (189), Expect = 3e-17
Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 36/148 (24%)
Query: 5 ANSVINEYTDWERTILHPINTRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGNG 64
++ +Y + I +D+ ++ P + + +R
Sbjct: 377 TKAMHEKYFKKS-------VDMEGYIELCTDSYFMYPAISLAIKRAR------------- 416
Query: 65 TSGAPNPPSSPGHTKSYFYVFDYQT-----KDGDYPQRMGTAHGEELPYIFGAPLIDGFS 119
++GAP Y Y F + ++ ++ G H E+L Y+F + G
Sbjct: 417 SNGAPV----------YLYQFSFDGDYSVFREVNHLNFEGAGHIEDLTYVFRTNSMLG-G 465
Query: 120 HFPRNFTKSEVALSEAFILYLSNFARTG 147
H + + +++NF +
Sbjct: 466 HASFPPHDKDDHMKYWMTSFITNFMKYS 493
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 75.8 bits (187), Expect = 6e-17
Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 30/144 (20%)
Query: 4 NANSVINEYTDWERTILHPINTRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGN 63
I Y + T + ++ +V +++ D +
Sbjct: 340 VPEEAIRYYKETAE---PSAPTWQTWLRIMTYRVFVEGMLRTADAQAA------------ 384
Query: 64 GTSGAPNPPSSPGHTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPR 123
GA Y Y FDY+T + ++ H ELP++F G ++F
Sbjct: 385 --QGAD----------VYMYRFDYETPV--FGGQLKACHALELPFVFHNLHQPGVANFVG 430
Query: 124 NFTKSEVALSEAFILYLSNFARTG 147
N A++ +FARTG
Sbjct: 431 N-RPEREAIANEMHYAWLSFARTG 453
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 72.8 bits (179), Expect = 5e-16
Identities = 26/143 (18%), Positives = 43/143 (30%), Gaps = 26/143 (18%)
Query: 5 ANSVINEYTDWERTILHPINTRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGNG 64
N + Y + + A+ AA DA + P + +R
Sbjct: 352 LNEINQVYPRGK-LLPRHAAYFGASSAAYGDATFTCPGNHVASSAAR------------- 397
Query: 65 TSGAPNPPSSPGHTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRN 124
PN + Y + + +G H ELP IFGA S +
Sbjct: 398 --YLPNS--------VWNYRVNIIDESN-IAGGIGVPHTFELPAIFGAGSTGTLS-SDSS 445
Query: 125 FTKSEVALSEAFILYLSNFARTG 147
+ A+ + Y +F +T
Sbjct: 446 YLTYNAAIIPVTMHYFISFVQTL 468
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 68.8 bits (169), Expect = 1e-14
Identities = 25/123 (20%), Positives = 37/123 (30%), Gaps = 29/123 (23%)
Query: 25 TRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGNGTSGAPNPPSSPGHTKSYFYV 84
+ ++ I ++D + P V S AP + Y
Sbjct: 350 SLESQIHMMTDLLFWRPAVAYASAQSH---------------YAP----------VWMYR 384
Query: 85 FDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRNFTKSEVALSEAFILYLSNFA 144
FD+ + P H ELP++FG L T LS FA
Sbjct: 385 FDWHP---EKPPYNKAFHALELPFVFG-NLDGLERMAKAEITDEVKQLSHTIQSAWITFA 440
Query: 145 RTG 147
+TG
Sbjct: 441 KTG 443
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 50.5 bits (121), Expect = 3e-08
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 19/71 (26%)
Query: 77 HTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRNFTKSEVALSEAF 136
+ Y+ + + +GT HG EL + F + + ++
Sbjct: 441 DVNRWTYLSTHLH---NLVPFLGTFHGNELIFQFNVNI----------------GPANSY 481
Query: 137 ILYLSNFARTG 147
+ Y +FA
Sbjct: 482 LRYFISFANHH 492
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 45.5 bits (108), Expect = 1e-06
Identities = 17/152 (11%), Positives = 33/152 (21%), Gaps = 56/152 (36%)
Query: 5 ANSVINEYTDWERTILHPINTRDAT---------IAAISDAQYVAPLVQIGDLLSRPQLL 55
++++ Y T P +T A + D ++ R L
Sbjct: 374 IDTLMAAYPQDI-TQGSPFDTGIFNAITPQFKRISAVLGDLAFIHA---------RRYFL 423
Query: 56 QSGGGAGNGTSGAPNPPSSPGHTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLI 115
G Y ++ + MGT H ++ +
Sbjct: 424 NH-------FQGGT----------KYSFLSKQLS----GLPIMGTFHANDIVWQDYLLG- 461
Query: 116 DGFSHFPRNFTKSEVALSEAFILYLSNFARTG 147
+ S + FA
Sbjct: 462 ---------------SGSVIYNNAFIAFATDL 478
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 1.5
Identities = 20/146 (13%), Positives = 35/146 (23%), Gaps = 51/146 (34%)
Query: 15 WERTILHPIN--------TRDATIAAISDAQYVA--PLVQIGDLLSRPQLLQSGGGAGNG 64
+ N TR + A L L+ +
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE----------- 302
Query: 65 TSGAPNPPSSPGHTKSYF--YVFDYQTKDGDYPQRMGTAHGEELPY---IFGAPLIDGFS 119
KS Y+ + D P+ + T + P I + DG +
Sbjct: 303 -------------VKSLLLKYL---DCRPQDLPREVLTTN----PRRLSIIAESIRDGLA 342
Query: 120 HFPR----NFTKSEVALSEAFILYLS 141
+ N K + E+ + L
Sbjct: 343 TWDNWKHVNCDKLTTII-ESSLNVLE 367
Score = 27.1 bits (59), Expect = 3.1
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 21/88 (23%)
Query: 74 SPGHTKSYFYVF-DYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGF-------SHFPRNF 125
P + YFY + K+ ++P+RM +F L F N
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERM-----TLFRMVF---LDFRFLEQKIRHDSTAWNA 516
Query: 126 TKSEVALSEAFILYLSNFARTGARDHHP 153
+ S + + Y D+ P
Sbjct: 517 SGSILNTLQQLKFYKPYI-----CDNDP 539
>3ubm_A COAT2, formyl-COA:oxalate COA-transferase; HET: COA; 1.99A
{Acetobacter aceti}
Length = 456
Score = 26.9 bits (60), Expect = 3.4
Identities = 9/41 (21%), Positives = 10/41 (24%)
Query: 68 APNPPSSPGHTKSYFYVFDYQTKDGDYPQRMGTAHGEELPY 108
+ Y K GD R G A G P
Sbjct: 251 LRDQQRLERVGYLEEYPQYPNGKFGDTVPRGGNAGGGGQPG 291
>1q7e_A Hypothetical protein YFDW; structural genomics, intertwined dimer,
PSI, protein structu initiative; HET: MSE; 1.60A
{Escherichia coli} SCOP: c.123.1.1 PDB: 1pqy_A* 1q6y_A*
1pt7_A 1pt5_A 1pt8_A*
Length = 428
Score = 26.8 bits (60), Expect = 3.6
Identities = 8/41 (19%), Positives = 9/41 (21%)
Query: 68 APNPPSSPGHTKSYFYVFDYQTKDGDYPQRMGTAHGEELPY 108
+ Y GD R G A G P
Sbjct: 214 LRDQQRLDKLGYLEEYPQYPNGTFGDAVPRGGNAGGGGQPG 254
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET: FAD
CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 25.6 bits (57), Expect = 7.9
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 13/38 (34%)
Query: 116 DGFSHFPRNFTKSEV--------ALSEAFILYLSNFAR 145
DG RN + A EA +L+ +
Sbjct: 165 DGAVPIFRN---KPLAVIGGGDSACEEA--QFLTKYGS 197
>4ed9_A CAIB/BAIF family protein; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; HET: NHE; 1.95A
{Brucella suis}
Length = 385
Score = 25.6 bits (57), Expect = 9.6
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 92 GDYPQRMGTAHGEELPY 108
G P+RMG AH PY
Sbjct: 227 GKSPKRMGNAHPNIAPY 243
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.415
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,474,200
Number of extensions: 141014
Number of successful extensions: 403
Number of sequences better than 10.0: 1
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 27
Length of query: 155
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 69
Effective length of database: 4,300,587
Effective search space: 296740503
Effective search space used: 296740503
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.0 bits)