RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4292
(155 letters)
>d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray
(Torpedo californica) [TaxId: 7787]}
Length = 532
Score = 71.7 bits (174), Expect = 5e-16
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 30/143 (20%)
Query: 5 ANSVINEYTDWERTILHPINTRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGNG 64
++V +YTDW + I RD + D + PL+ + ++
Sbjct: 365 LDAVTLQYTDWMDDN-NGIKNRDGLDDIVGDHNVICPLMHFVNKYTK------------- 410
Query: 65 TSGAPNPPSSPGHTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRN 124
+Y Y F+++ + +P+ MG HG E+ ++FG PL+ N
Sbjct: 411 -----------FGNGTYLYFFNHRASNLVWPEWMGVIHGYEIEFVFGLPLVKEL-----N 454
Query: 125 FTKSEVALSEAFILYLSNFARTG 147
+T E ALS + Y + FA+TG
Sbjct: 455 YTAEEEALSRRIMHYWATFAKTG 477
>d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 526
Score = 71.3 bits (173), Expect = 8e-16
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 30/145 (20%)
Query: 3 FNANSVINEYTDWERTILHPINTRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAG 62
F S++ YTDW P N R+A + D ++ P ++ S
Sbjct: 361 FGKESILFHYTDWVDDQ-RPENYREALGDVVGDYNFICPALEFTKKFSE----------- 408
Query: 63 NGTSGAPNPPSSPGHTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFP 122
++FY F++++ +P+ MG HG E+ ++FG PL
Sbjct: 409 -------------WGNNAFFYYFEHRSSKLPWPEWMGVMHGYEIEFVFGLPL-----ERR 450
Query: 123 RNFTKSEVALSEAFILYLSNFARTG 147
+TK+E LS + + +NFA+ G
Sbjct: 451 DQYTKAEEILSRSIVKRWANFAKYG 475
>d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 571
Score = 70.6 bits (171), Expect = 1e-15
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 74 SPGHTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRNFTKSEVALS 133
+ ++Y F ++T + + MG HG+E+ Y FG PL + + E L
Sbjct: 450 AERGASVHYYYFTHRTSTSLWGEWMGVLHGDEIEYFFGQPLNNSL-----QYRPVERELG 504
Query: 134 EAFILYLSNFARTG 147
+ + + FA+TG
Sbjct: 505 KRMLSAVIEFAKTG 518
>d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol
esterase) {Cow (Bos taurus) [TaxId: 9913]}
Length = 579
Score = 69.7 bits (169), Expect = 2e-15
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 73 SSPGHTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRNFTKSEVAL 132
S +Y Y+F ++ YP+ MG H ++L Y+FG P P + + +
Sbjct: 406 SHAKSANTYTYLFSQPSRMPIYPKWMGADHADDLQYVFGKPFA-----TPLGYRAQDRTV 460
Query: 133 SEAFILYLSNFARTG 147
S+A I Y +NFARTG
Sbjct: 461 SKAMIAYWTNFARTG 475
>d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 542
Score = 67.5 bits (163), Expect = 1e-14
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 30/143 (20%)
Query: 5 ANSVINEYTDWERTILHPINTRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGNG 64
A +V+ YTDW P + RDA A + D V P+ Q+ L+
Sbjct: 375 AEAVVLHYTDWLHPE-DPTHLRDAMSAVVGDHNVVCPVAQLAGRLAA------------- 420
Query: 65 TSGAPNPPSSPGHTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRN 124
+ Y Y+F+++ +P MG HG E+ +IFG PL N
Sbjct: 421 -----------QGARVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPSL-----N 464
Query: 125 FTKSEVALSEAFILYLSNFARTG 147
+T E ++ + Y +NFARTG
Sbjct: 465 YTTEERIFAQRLMKYWTNFARTG 487
>d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver
carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]}
Length = 532
Score = 61.7 bits (148), Expect = 1e-12
Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 32/138 (23%)
Query: 12 YTDWERTILHPINTRDATIAAISDAQYVAPLVQIGDLLSRPQLLQSGGGAGNGTSGAPNP 71
+ + +D + I+D + P V +
Sbjct: 379 TEKYLGGTDDTVKKKDLFLDLIADVMFGVPSVIVARNHRD-------------------- 418
Query: 72 PSSPGHTKSYFYVFDYQTK--DGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRNFTKSE 129
+Y Y F Y+ P+ + HG+EL +FGAP ++ E
Sbjct: 419 ----AGAPTYMYEFQYRPSFSSDMKPKTVIGDHGDELFSVFGAPF------LKEGASEEE 468
Query: 130 VALSEAFILYLSNFARTG 147
+ LS+ + + +NFAR G
Sbjct: 469 IRLSKMVMKFWANFARNG 486
>d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB
esterase) {Bacillus subtilis [TaxId: 1423]}
Length = 483
Score = 60.9 bits (146), Expect = 3e-12
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 77 HTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPR-NFTKSEVALSEA 135
+ + Y FD+ + P H ELP++FG DG + T LS
Sbjct: 376 YAPVWMYRFDW---HPEKPPYNKAFHALELPFVFGNL--DGLERMAKAEITDEVKQLSHT 430
Query: 136 FILYLSNFARTG 147
FA+TG
Sbjct: 431 IQSAWITFAKTG 442
>d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId:
5061]}
Length = 517
Score = 59.8 bits (143), Expect = 8e-12
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 76 GHTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRNFTKSEVALSEA 135
+ Y + + + +G H ELP IFGA S ++ A+
Sbjct: 394 LPNSVWNYRVNIID-ESNIAGGIGVPHTFELPAIFGAGSTGTLS-SDSSYLTYNAAIIPV 451
Query: 136 FILYLSNFARTG 147
+ Y +F +T
Sbjct: 452 TMHYFISFVQTL 463
>d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus
(Geotrichum candidum), ATCC 34614 [TaxId: 27317]}
Length = 544
Score = 51.7 bits (122), Expect = 4e-09
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 19/71 (26%)
Query: 77 HTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRNFTKSEVALSEAF 136
+ Y+ + + +GT HG EL + F + + ++
Sbjct: 441 DVNRWTYLSTHLH---NLVPFLGTFHGNELIFQFNVNI----------------GPANSY 481
Query: 137 ILYLSNFARTG 147
+ Y +FA
Sbjct: 482 LRYFISFANHH 492
>d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida
cylindracea, cholesterol esterase [TaxId: 44322]}
Length = 534
Score = 39.4 bits (90), Expect = 9e-05
Identities = 8/71 (11%), Positives = 16/71 (22%), Gaps = 20/71 (28%)
Query: 77 HTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRNFTKSEVALSEAF 136
Y ++ + MGT H ++ + + S +
Sbjct: 428 GGTKYSFLSKQLS----GLPIMGTFHANDIVWQDYLLG----------------SGSVIY 467
Query: 137 ILYLSNFARTG 147
FA
Sbjct: 468 NNAFIAFATDL 478
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 24.9 bits (53), Expect = 4.8
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 70 NPPSSPGHTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGFSHFPRNFT 126
NP KS+ FDY P+ + A +++ G ++
Sbjct: 36 NPKQPKETPKSF--SFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCI 90
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 25.1 bits (53), Expect = 5.5
Identities = 9/51 (17%), Positives = 15/51 (29%)
Query: 68 APNPPSSPGHTKSYFYVFDYQTKDGDYPQRMGTAHGEELPYIFGAPLIDGF 118
AP PP P H F +++ + +P + G
Sbjct: 2 APLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQESNVPDLVWTRCNGGH 52
>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId:
10090]}
Length = 118
Score = 23.6 bits (50), Expect = 8.1
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 53 QLLQSGGG 60
+LL+SGGG
Sbjct: 3 KLLESGGG 10
>d1szwa_ d.265.1.4 (A:) tRNA pseudouridine synthase TruD
{Escherichia coli [TaxId: 562]}
Length = 341
Score = 24.2 bits (52), Expect = 8.2
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 104 EELPYIFGAPLIDG-FSHFPRNFTKSEVALSE 134
+ L Y+ G P G P +F E E
Sbjct: 5 DNLTYLHGKPQGTGLLKANPEDFVVVEDLGFE 36
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 24.1 bits (52), Expect = 9.3
Identities = 4/17 (23%), Positives = 8/17 (47%), Gaps = 1/17 (5%)
Query: 114 LID-GFSHFPRNFTKSE 129
L + F+ P T+ +
Sbjct: 11 LYEVDFTGLPDGHTEED 27
>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId:
10090]}
Length = 114
Score = 23.5 bits (50), Expect = 9.9
Identities = 4/8 (50%), Positives = 6/8 (75%)
Query: 53 QLLQSGGG 60
L++SGG
Sbjct: 3 TLVESGGD 10
>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable
domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 117
Score = 23.5 bits (50), Expect = 10.0
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 53 QLLQSGGG 60
+LL+SG G
Sbjct: 3 KLLESGPG 10
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.415
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 591,746
Number of extensions: 26232
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 37
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.4 bits)