BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4296
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95639|CPSF4_HUMAN Cleavage and polyadenylation specificity factor subunit 4 OS=Homo
sapiens GN=CPSF4 PE=1 SV=1
Length = 269
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C NKECPFLHI
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 115
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 116 DPESKIK 122
>sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity factor subunit 4
OS=Xenopus tropicalis GN=cpsf4 PE=2 SV=1
Length = 269
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C NKECPFLHI
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 115
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 116 DPESKIK 122
>sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity factor subunit 4
OS=Xenopus laevis GN=cpsf4 PE=2 SV=1
Length = 269
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C NKECPFLHI
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 115
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 116 DPESKIK 122
>sp|Q5FVR7|CPSF4_RAT Cleavage and polyadenylation specificity factor subunit 4 OS=Rattus
norvegicus GN=Cpsf4 PE=2 SV=1
Length = 243
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C NKECPFLHI
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 115
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 116 DPESKIK 122
>sp|O19137|CPSF4_BOVIN Cleavage and polyadenylation specificity factor subunit 4 OS=Bos
taurus GN=CPSF4 PE=2 SV=1
Length = 243
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C NKECPFLHI
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 115
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 116 DPESKIK 122
>sp|A6NMK7|CPS4L_HUMAN Putative cleavage and polyadenylation specificity factor subunit
4-like protein OS=Homo sapiens GN=CPSF4L PE=2 SV=3
Length = 179
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 52/62 (83%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RH G++ VVCKHWLRGLCKKGD C+FLH+YD+T+MPECYFYS+F C NKEC FLH+
Sbjct: 56 PFRHDRGEKMVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKECSFLHV 115
Query: 84 DP 85
P
Sbjct: 116 KP 117
>sp|Q8BQZ5|CPSF4_MOUSE Cleavage and polyadenylation specificity factor subunit 4 OS=Mus
musculus GN=Cpsf4 PE=2 SV=1
Length = 211
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/48 (85%), Positives = 46/48 (95%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFN 71
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFG 103
>sp|Q59T36|YTH1_CANAL mRNA 3'-end-processing protein YTH1 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=YTH1 PE=3 SV=1
Length = 215
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Query: 24 PLRHITG--DRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNAC-HNKECPF 80
P +H++ +VCKHWLRGLCKKGD CEFLHEY++ KMPEC FYS+ C EC +
Sbjct: 57 PNKHVSAMYSNKIVCKHWLRGLCKKGDHCEFLHEYNLRKMPECLFYSKNGYCTQTSECLY 116
Query: 81 LHIDPDSMI 89
LH+DP S I
Sbjct: 117 LHVDPQSKI 125
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 26 RHITGDRSVVCKHWLRGLCKKGDQCEFLH 54
RH+ R V+C +L G C KG +CEF H
Sbjct: 145 RHV---RRVLCPLYLYGFCPKGPECEFTH 170
>sp|Q4IPA4|YTH1_GIBZE mRNA 3'-end-processing protein YTH1 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=YTH1 PE=3
SV=2
Length = 255
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 51/76 (67%), Gaps = 10/76 (13%)
Query: 24 PLRHIT---------GDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACH 74
P RH++ G S+VCKHWLRGLCKKG+ CEFLHEY++ KMPEC F+ R C
Sbjct: 58 PERHVSDSKTSQPTGGLNSLVCKHWLRGLCKKGEHCEFLHEYNLRKMPECNFFMRNGYCS 117
Query: 75 N-KECPFLHIDPDSMI 89
N EC +LHIDP S +
Sbjct: 118 NGDECLYLHIDPQSRL 133
>sp|Q6BTT1|YTH1_DEBHA mRNA 3'-end-processing protein YTH1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=YTH1 PE=3 SV=2
Length = 223
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 24 PLRHITG--DRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNAC-HNKECPF 80
P +H++ +VCKHWLRGLCKK D CEFLHEY++ KMPEC FYS+ C EC +
Sbjct: 57 PHKHVSSMYSNKIVCKHWLRGLCKKNDHCEFLHEYNLRKMPECLFYSKNGFCTQTPECLY 116
Query: 81 LHIDPDSMI 89
LH+DP S I
Sbjct: 117 LHVDPQSKI 125
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 26 RHITGDRSVVCKHWLRGLCKKGDQCEFLH 54
RHI R ++C WL G C KG +C++ H
Sbjct: 145 RHI---RKIMCPLWLTGFCPKGAECDYTH 170
>sp|Q7SGR2|YTH1_NEUCR mRNA 3'-end-processing protein yth-1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=yth-1 PE=3 SV=1
Length = 317
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 45/58 (77%), Gaps = 1/58 (1%)
Query: 33 SVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHN-KECPFLHIDPDSMI 89
S+VCKHWLRGLCKKG+ CEFLHEY++ KMPEC F+ R C N EC +LHIDP S +
Sbjct: 96 SLVCKHWLRGLCKKGESCEFLHEYNLRKMPECNFFVRNGYCSNGDECLYLHIDPLSRL 153
>sp|Q6FTL0|YTH1_CANGA mRNA 3'-end-processing protein YTH1 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=YTH1 PE=3 SV=1
Length = 209
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Query: 24 PLRHITG--DRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNAC-HNKECPF 80
P +H+ G +VCKHWLRGLCKK D CE+LHEY++ KMPEC FY++ C + EC +
Sbjct: 54 PKKHVLGIFQNKIVCKHWLRGLCKKNDNCEYLHEYNLRKMPECVFYAKNGFCTQSPECQY 113
Query: 81 LHIDPDSMI 89
LHIDP S +
Sbjct: 114 LHIDPLSKV 122
>sp|Q9UTD1|YTH1_SCHPO mRNA 3'-end-processing protein yth1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=yth1 PE=3 SV=1
Length = 170
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Query: 33 SVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHN-KECPFLHIDPDSMI 89
SVVCKHWLRGLCKKG+QC+FLHEY++ KMP C+FY+ C N +EC +LH+DP +
Sbjct: 51 SVVCKHWLRGLCKKGEQCDFLHEYNLKKMPPCHFYAERGWCSNGEECLYLHLDPSKQV 108
>sp|Q758T3|YTH1_ASHGO mRNA 3'-end-processing protein YTH1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=YTH1
PE=3 SV=1
Length = 209
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 24 PLRHITG--DRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNAC-HNKECPF 80
P +H+ +VCKHWLRGLCKK DQCE+LHEY++ KMPEC F+++ C + EC +
Sbjct: 53 PNKHVLPIFQNKIVCKHWLRGLCKKNDQCEYLHEYNLRKMPECVFFTKNGYCTQSPECQY 112
Query: 81 LHIDPDSMIE 90
LHIDP S ++
Sbjct: 113 LHIDPTSKVQ 122
>sp|Q4P384|YTH1_USTMA mRNA 3'-end-processing protein YTH1 OS=Ustilago maydis (strain 521
/ FGSC 9021) GN=YTH1 PE=3 SV=1
Length = 366
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Query: 31 DRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHN-KECPFLHIDP 85
++ VCKHWLRGLCKK DQC++LHEYDM ++PEC FY+ F C++ +C +LH+DP
Sbjct: 105 NKRTVCKHWLRGLCKKDDQCDYLHEYDMRRIPECRFYATFGFCNSGDDCLYLHVDP 160
>sp|Q06102|YTH1_YEAST mRNA 3'-end-processing protein YTH1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YTH1 PE=1 SV=1
Length = 208
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Query: 24 PLRHITG--DRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNAC-HNKECPF 80
P +H+ +VC+HWLRGLCKK DQCE+LHEY++ KMPEC F+S+ C + +C +
Sbjct: 53 PKKHVLPIFQNKIVCRHWLRGLCKKNDQCEYLHEYNLRKMPECVFFSKNGYCTQSPDCQY 112
Query: 81 LHIDPDSMI 89
LHIDP S I
Sbjct: 113 LHIDPASKI 121
>sp|Q6CKU1|YTH1_KLULA mRNA 3'-end-processing protein YTH1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=YTH1 PE=3 SV=1
Length = 210
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 3/70 (4%)
Query: 24 PLRHITG--DRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNAC-HNKECPF 80
P +H+ +VCKHWLRGLCKK DQCE+LHEY++ KMPEC F+++ C + EC +
Sbjct: 53 PNKHVLPIFQNKIVCKHWLRGLCKKNDQCEYLHEYNLRKMPECVFFTKNGYCTQSPECQY 112
Query: 81 LHIDPDSMIE 90
LH+D S +E
Sbjct: 113 LHVDHKSQLE 122
>sp|Q6C922|YTH1_YARLI mRNA 3'-end-processing protein YTH1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=YTH1 PE=3 SV=1
Length = 193
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 24 PLRHI--TGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNAC-HNKECPF 80
P +H+ T +VCKHWLRGLCKKG CEFLHEY++ KMPEC FY + C + +C +
Sbjct: 46 PDKHLAPTFLNKIVCKHWLRGLCKKGLNCEFLHEYNLQKMPECQFYVKNGFCTQSPDCQY 105
Query: 81 LHIDPDSMI 89
LHIDP S I
Sbjct: 106 LHIDPASKI 114
>sp|A9LNK9|CPSF_ARATH Cleavage and polyadenylation specificity factor CPSF30
OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1
Length = 631
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHIDPD 86
R VC+HWLRGLC KGD C FLH++D +MP C F+ + C ++C + H + D
Sbjct: 62 RQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQDCVYKHTNED 116
>sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa
subsp. japonica GN=Os06g0677700 PE=2 SV=1
Length = 665
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLH 82
R VC+HWLRGLC KG+ C FLH++D +MP C F+ F C +C + H
Sbjct: 60 RQTVCRHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECREPDCAYKH 110
>sp|Q4WKD9|YTH1_ASPFU mRNA 3'-end-processing protein yth1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=yth1
PE=3 SV=1
Length = 254
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 1 MGKCCAGIIQDPSFQAPGVLVPFPLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTK 60
+G C PS L T S+VCKH+L+GLCKKG +CE+LHEY++ +
Sbjct: 57 LGPACPDRHPTPSRVTTSTTTASGLAPSTTHGSLVCKHFLKGLCKKGLKCEYLHEYNLRR 116
Query: 61 MPECYFYSRFNACHN-KECPFLHI 83
MPEC +SR C N +C + H+
Sbjct: 117 MPECQSFSRSGYCPNGDDCLYQHV 140
>sp|Q2URI6|YTH1_ASPOR mRNA 3'-end-processing protein yth1 OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=yth1 PE=3 SV=1
Length = 255
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MGKCCAGIIQDPSFQAPGVLVPFPLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTK 60
+G C PS L T S+VCKH+L+GLCKKG +CE+LHEY++ +
Sbjct: 57 LGPACPDRHPTPSRVTTSTTTASGLAPSTTHGSLVCKHFLKGLCKKGLKCEYLHEYNLRR 116
Query: 61 MPECYFYSRFNACHN-KECPFLHIDPDSMI 89
MPEC +SR C N +C + H+ + +
Sbjct: 117 MPECQSFSRSGYCPNGDDCLYQHVREQARL 146
>sp|Q5BGN2|YTH1_EMENI mRNA 3'-end-processing protein yth1 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=yth1 PE=3 SV=1
Length = 254
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MGKCCAGIIQDPSFQAPGVLVPFPLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTK 60
+G C PS L T S+VCKH+L+GLCKKG +CE+LHEY++ +
Sbjct: 57 LGPACPDRHPTPSRVTTSTTTASGLAPSTTHGSLVCKHFLKGLCKKGMKCEYLHEYNLRR 116
Query: 61 MPECYFYSRFNACHN-KECPFLHIDPDSMI 89
MPEC +SR C N +C + H+ + +
Sbjct: 117 MPECQSFSRSGYCPNGDDCLYQHVREQARL 146
>sp|P0CS64|YTH1_CRYNJ mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=YTH1 PE=3 SV=1
Length = 332
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACH-NKECPFLH 82
VCKH+LR LCK GD CE+ H++++ MP C ++ + C EC + H
Sbjct: 97 TVCKHYLRNLCKMGDNCEYTHDFNLRTMPVCIWFVKQGKCELGGECLYFH 146
>sp|P0CS65|YTH1_CRYNB mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=YTH1 PE=3 SV=1
Length = 332
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 34 VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACH-NKECPFLH 82
VCKH+LR LCK GD CE+ H++++ MP C ++ + C EC + H
Sbjct: 97 TVCKHYLRNLCKMGDNCEYTHDFNLRTMPVCIWFVKQGKCELGGECLYFH 146
>sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein 3 OS=Mus musculus
GN=Zc3h3 PE=2 SV=1
Length = 950
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 31 DRSVVCKHWLRGLCKKGD-QCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
++ VC ++RG CKK D C F H KMP C ++ + C N CP+ H+
Sbjct: 690 EKVAVCTRFVRGTCKKTDGSCPFSHHVSKEKMPVCSYFLK-GICSNSNCPYSHV 742
>sp|O74823|YBJC_SCHPO Zinc finger CCCH domain-containing protein C337.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC337.12 PE=4 SV=3
Length = 376
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
R +C +L G C K + C HE D ++P C ++ C+N C ++HI
Sbjct: 231 RKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYF-LLGKCNNPNCRYVHI 281
>sp|Q8IXZ2|ZC3H3_HUMAN Zinc finger CCCH domain-containing protein 3 OS=Homo sapiens
GN=ZC3H3 PE=1 SV=3
Length = 948
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 31 DRSVVCKHWLRGLCKKGD-QCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
++ VC ++RG CKK D C F H KMP C ++ + C N CP+ H+
Sbjct: 695 EKVAVCTRFVRGTCKKTDGTCPFSHHVSKEKMPVCSYFLK-GICSNSNCPYSHV 747
>sp|P61129|ZC3H6_HUMAN Zinc finger CCCH domain-containing protein 6 OS=Homo sapiens
GN=ZC3H6 PE=2 SV=2
Length = 1189
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 35 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLH 82
+CK++L G C KGDQC+F H+ ++ K E C FY + + C ++H
Sbjct: 277 ICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMH 325
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKE-CPFLHID 84
R +CK +L+G C KG+ C ++H + P C FY C+ + C F H D
Sbjct: 303 RKEICKFYLQGYCTKGENCIYMH----NEFP-CKFYHSGAKCYQGDNCKFSHDD 351
>sp|Q9LTS7|C3H65_ARATH Zinc finger CCCH domain-containing protein 65 OS=Arabidopsis
thaliana GN=EMB1789 PE=2 SV=1
Length = 675
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 36 CKHWLRGLCKKGDQCEFLHE-YDMTKMPECYFYSRFNACHNKECPFLH 82
C+H+L+G C +GD+C+F H+ TK C +++ + +CPF H
Sbjct: 356 CRHYLKGRCHEGDKCKFSHDTIPETKCSPCCYFATQSCMKGDDCPFDH 403
>sp|O22243|C3H31_ARATH Zinc finger CCCH domain-containing protein 31 OS=Arabidopsis
thaliana GN=At2g47680 PE=2 SV=2
Length = 1015
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKE-CPFLH 82
P ++ + VC ++L G C +G QC F H T+ P C F++ C N E C F H
Sbjct: 721 PEDYVEYGEAPVCVYFLNGYCNRGGQCTFTHTLQSTR-PACKFFASSQGCRNGESCLFSH 779
>sp|Q9UPT8|ZC3H4_HUMAN Zinc finger CCCH domain-containing protein 4 OS=Homo sapiens
GN=ZC3H4 PE=1 SV=3
Length = 1303
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 34 VVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHID 84
V+CK+++ G C GD C F H+ ++ K E C FY + CP++H D
Sbjct: 394 VICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMHGD 445
>sp|Q6ZPZ3|ZC3H4_MOUSE Zinc finger CCCH domain-containing protein 4 OS=Mus musculus
GN=Zc3h4 PE=1 SV=2
Length = 1304
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 34 VVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHID 84
V+CK+++ G C GD C F H+ ++ K E C FY + CP++H D
Sbjct: 393 VICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMHGD 444
>sp|Q9DD48|MKRN2_SERQU Probable E3 ubiquitin-protein ligase makorin-2 OS=Seriola
quinqueradiata GN=mkrn2 PE=2 SV=1
Length = 423
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHIDPDS 87
+ V C+++L G+C++G +C F H+ + +K C FY R + + C + HI P S
Sbjct: 4 KQVTCRYFLHGVCREGSRCLFSHDLNNSKPSTICKFYQRGVCAYGERCRYDHIKPSS 60
>sp|Q3ED78|C3H7_ARATH Zinc finger CCCH domain-containing protein 7 OS=Arabidopsis
thaliana GN=At1g21570 PE=1 SV=1
Length = 470
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 35 VCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
VC +L GLC + C+ H+ +MP+C +Y + C+N+ CP+ H+
Sbjct: 273 VCTKFLNGLCANAN-CKLTHKVIPERMPDCSYYLQ-GLCNNEACPYRHV 319
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 24 PLRHI-TGDRSVVCKHWLRGLCKKGDQCEFLHEYD 57
P RH+ + +C +L+G C +GD+C H Y+
Sbjct: 315 PYRHVHVNPIAPICDGFLKGYCSEGDECRKKHSYN 349
>sp|Q9FE91|C3H62_ARATH Zinc finger CCCH domain-containing protein 62 OS=Arabidopsis
thaliana GN=ZFWD4 PE=2 SV=1
Length = 419
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEY 56
P+R + R VCK+W G CK+G+QC+FLH +
Sbjct: 84 PMRS-SSLRKWVCKYWKDGKCKRGEQCQFLHSW 115
>sp|Q5NU14|MKRN1_TAKRU Probable E3 ubiquitin-protein ligase makorin-1 OS=Takifugu
rubripes GN=mkrn1 PE=2 SV=1
Length = 429
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE--CYFYSRFNACHNKECPFLHIDPDSMI 89
+ V C++++ GLCK+GD C + H+ +K C F+ + N + C F H P
Sbjct: 20 KHVTCRYFMHGLCKEGDNCRYSHDLTSSKPAAMMCKFFQKGNCVFGERCRFEHCKPTKSE 79
Query: 90 EAS 92
E S
Sbjct: 80 EVS 82
>sp|Q8BYK8|ZC3H6_MOUSE Zinc finger CCCH domain-containing protein 6 OS=Mus musculus
GN=Zc3h6 PE=2 SV=2
Length = 1177
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 35 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLH 82
+CK++L G C KGD C+F H+ ++ K E C +Y + + C ++H
Sbjct: 275 ICKYFLEGRCIKGDHCKFNHDAELEKKKEVCKYYLQGYCTKGENCIYMH 323
>sp|Q0J952|C3H32_ORYSJ Zinc finger CCCH domain-containing protein 32 OS=Oryza sativa
subsp. japonica GN=Os04g0671800 PE=2 SV=1
Length = 711
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 32 RSVVCKHWLRG--LCKKGDQCEFLHEYDMTKMP-ECYFYSRFNACHNKECPFLHIDPDSM 88
R+ C ++L CKKG++C+F H + P +C+++ N C N +CPF H D M
Sbjct: 33 RNTDCVYFLASPLTCKKGNECDFRHSDNARMNPRDCWYWLNSN-CLNPKCPFRHPPIDGM 91
Query: 89 IEA-SVGM 95
A + GM
Sbjct: 92 FGAPTTGM 99
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 11 DPSFQAPGVLVPFPLRHI----TGDRSVVCKHWLRGLCKKGDQCEFLH 54
D F AP +P H +G + V C ++ +G C KGD+C F H
Sbjct: 89 DGMFGAPTTGMPAVSSHYAPFNSGKQLVPCYYFKKGNCLKGDRCAFYH 136
>sp|Q9H000|MKRN2_HUMAN Probable E3 ubiquitin-protein ligase makorin-2 OS=Homo sapiens
GN=MKRN2 PE=2 SV=2
Length = 416
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHIDPDSMIE 90
+ + C++++ G+C++G QC F H+ +K C +Y + + C + H P +
Sbjct: 4 KQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHTRPSAAAG 63
Query: 91 ASVG-MVHRVDT 101
+VG M H V +
Sbjct: 64 GAVGTMAHSVPS 75
>sp|Q5NU13|MKRN2_TAKRU Probable E3 ubiquitin-protein ligase makorin-2 OS=Takifugu
rubripes GN=mkrn2 PE=2 SV=1
Length = 402
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHIDPDS 87
+ V C+++L G+C++G+ C+F H+ +K C FY R + + C + H+ S
Sbjct: 4 KQVTCRYFLHGVCREGNHCQFSHDPSSSKPSTICKFYQRGTCAYGERCRYDHVKLSS 60
>sp|Q657B3|C3H7_ORYSJ Zinc finger CCCH domain-containing protein 7 OS=Oryza sativa subsp.
japonica GN=Os01g0572100 PE=2 SV=1
Length = 698
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 35 VCKHWLRGLCKKGDQCEFLHEYD-MTKMPECYFYSRFNACHNKECPFLH 82
VC +L G C++G+ C+F H+ +TK C Y+R + +CP+ H
Sbjct: 434 VCHFYLHGKCQQGNLCKFSHDTTPLTKSKPCTHYARGSCLKGDDCPYDH 482
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNAC-HNKECPFLHIDPDS 87
+S C H+ RG C KGD C + HE ++K P C+ + C +C F H+ P +
Sbjct: 460 KSKPCTHYARGSCLKGDDCPYDHE--LSKYP-CHNFMENGMCIRGDKCKFSHVIPTA 513
>sp|Q4SRI6|MKRN1_TETNG Probable E3 ubiquitin-protein ligase makorin-1 OS=Tetraodon
nigroviridis GN=mkrn1 PE=3 SV=1
Length = 372
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE--CYFYSRFNACHNKECPFLHIDPDSMI 89
+ V C++++ GLCK+GD C + H+ +K C F+ + N + C F H P
Sbjct: 20 KHVTCRYFMHGLCKEGDNCRYSHDLTNSKPAAMICKFFQKGNCVFGERCRFDHCKPTKNE 79
Query: 90 E 90
E
Sbjct: 80 E 80
>sp|Q8JFF3|MKRN1_SERQU Probable E3 ubiquitin-protein ligase makorin-1 OS=Seriola
quinqueradiata GN=mkrn1 PE=2 SV=1
Length = 435
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE--CYFYSRFNACHNKECPFLHIDP 85
+ V C++++ GLCK+GD C + H+ +K C F+ + N C F H P
Sbjct: 20 KHVTCRYFMHGLCKEGDNCRYSHDLTNSKPAAMICKFFQKGNCVFGDRCRFEHCKP 75
>sp|Q5ZA07|C3H41_ORYSJ E3 ubiquitin-protein ligase makorin OS=Oryza sativa subsp.
japonica GN=MKRN PE=2 SV=1
Length = 368
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
+ V+CK ++ G C KG+ CEF H+++ C FY + + + C + H+
Sbjct: 4 KRVLCKFFMHGACLKGEYCEFSHDWNDQPNNVCTFYQKGSCSYGSRCRYDHV 55
>sp|Q6GLD9|MKRN2_XENTR Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus
tropicalis GN=mkrn2 PE=2 SV=1
Length = 418
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHIDP 85
+ V C+++L G+C++G +C F H+ +K C FY R + C + H+ P
Sbjct: 4 KHVTCRYFLHGVCREGGRCLFSHDLATSKPSTVCRFYQRGQCAYGARCRYDHVKP 58
>sp|Q9DFG8|MKRN2_DANRE Probable E3 ubiquitin-protein ligase makorin-2 OS=Danio rerio
GN=mkrn2 PE=2 SV=2
Length = 414
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHIDP 85
+ V C+++L G+C++G +C F H+ +K C +Y R + C + HI P
Sbjct: 4 KQVTCRYFLHGVCREGSRCLFSHDLTTSKPSTICKYYQRGACAYGDRCRYDHIKP 58
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 28 ITGDRSVVCKHWLRGLCKKGDQCEFLH 54
T S +CK++ RG C GD+C + H
Sbjct: 29 TTSKPSTICKYYQRGACAYGDRCRYDH 55
>sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1
PE=2 SV=1
Length = 478
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 15 QAPGVLVPFPLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNAC 73
Q+P + V C++++ G+CKKG+ C + H+ ++ C +Y R
Sbjct: 36 QSPAAGGGGGGSGGGWTKQVTCRYFMHGVCKKGNNCRYSHDLSTSQSAMVCRYYQRGCCA 95
Query: 74 HNKECPFLHIDPDSMIEASVGMV 96
+ C + H P E + +
Sbjct: 96 YGDRCRYEHTKPLKREEVTAANL 118
>sp|Q8N5P1|ZC3H8_HUMAN Zinc finger CCCH domain-containing protein 8 OS=Homo sapiens
GN=ZC3H8 PE=1 SV=2
Length = 291
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 35 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLH 82
+CK++L C KGDQC+F H+ ++ K E C FY + + C +LH
Sbjct: 196 ICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLH 244
>sp|B0F0H3|MKRN2_XENLA Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus laevis
GN=mkrn2 PE=2 SV=2
Length = 409
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHIDP 85
+ V C+++L G+C++G +C F H+ +K C F+ R + C + H+ P
Sbjct: 4 KQVTCRYFLHGVCREGSRCLFSHDLATSKPSTVCRFFLRGQCAYGTRCRYDHVKP 58
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.143 0.495
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,635,379
Number of Sequences: 539616
Number of extensions: 1597238
Number of successful extensions: 3899
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 3485
Number of HSP's gapped (non-prelim): 429
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)