Query psy4296
Match_columns 103
No_of_seqs 141 out of 621
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 21:55:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4296.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4296hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9n_A Cleavage and polyadenyl 99.8 1.5E-21 5.2E-26 123.6 3.0 68 31-98 8-75 (77)
2 2rhk_C Cleavage and polyadenyl 99.8 3E-20 1E-24 116.6 2.7 62 27-88 10-71 (72)
3 2e5s_A Otthump00000018578; ZF- 99.6 2.4E-17 8.3E-22 108.8 1.3 66 20-86 7-80 (98)
4 3d2q_A Muscleblind-like protei 99.6 2.2E-16 7.5E-21 98.1 1.5 54 31-85 4-65 (70)
5 2rpp_A Muscleblind-like protei 99.6 1.2E-15 4.3E-20 99.2 2.9 66 20-86 4-75 (89)
6 2cqe_A KIAA1064 protein; CCCH 99.5 1.3E-15 4.4E-20 100.4 2.5 65 25-94 3-70 (98)
7 3d2n_A Muscleblind-like protei 99.5 1.6E-14 5.3E-19 92.8 3.2 55 31-86 7-67 (83)
8 2d9n_A Cleavage and polyadenyl 99.4 1.7E-13 5.7E-18 86.4 2.7 58 12-71 13-75 (77)
9 1m9o_A Tristetraproline; Cys3H 99.3 1.1E-12 3.9E-17 81.6 2.9 55 31-85 10-75 (77)
10 2rhk_C Cleavage and polyadenyl 98.9 3.6E-10 1.2E-14 70.4 0.8 47 12-59 19-70 (72)
11 2cqe_A KIAA1064 protein; CCCH 98.8 1.6E-09 5.5E-14 71.0 2.2 49 12-64 16-68 (98)
12 3d2q_A Muscleblind-like protei 98.8 1.2E-09 4E-14 67.5 1.2 43 13-56 10-64 (70)
13 2e5s_A Otthump00000018578; ZF- 98.6 2.8E-09 9.4E-14 70.0 -0.1 44 13-57 24-79 (98)
14 3d2n_A Muscleblind-like protei 98.5 4.1E-08 1.4E-12 62.7 2.8 44 13-57 13-66 (83)
15 2rpp_A Muscleblind-like protei 98.3 1.2E-07 4.2E-12 61.2 0.6 43 14-57 22-74 (89)
16 1m9o_A Tristetraproline; Cys3H 98.3 3.7E-07 1.3E-11 56.3 2.3 44 14-57 18-75 (77)
17 2lhn_A Nuclear polyadenylated 97.3 5.3E-07 1.8E-11 57.3 0.0 62 10-83 10-71 (80)
18 3u9g_A Zinc finger CCCH-type a 97.5 6.1E-05 2.1E-09 55.9 3.7 42 33-84 151-197 (229)
19 2lhn_A Nuclear polyadenylated 96.6 1.4E-05 4.9E-10 50.6 0.0 44 31-83 7-50 (80)
20 3u9g_A Zinc finger CCCH-type a 97.1 0.00027 9.3E-09 52.5 2.9 40 17-58 158-199 (229)
21 2fc6_A Nuclear, target of EGR1 97.1 0.00028 9.4E-09 40.9 2.2 28 31-58 18-46 (50)
22 2d9m_A Zinc finger CCCH-type d 97.0 0.00051 1.7E-08 42.4 2.9 33 24-57 12-44 (69)
23 3u1l_A PRE-mRNA-splicing facto 96.5 0.00062 2.1E-08 50.5 0.7 27 32-58 69-95 (240)
24 2fc6_A Nuclear, target of EGR1 95.3 0.014 4.8E-07 33.7 3.0 36 50-85 8-45 (50)
25 3u1l_A PRE-mRNA-splicing facto 95.2 0.0041 1.4E-07 46.1 0.4 26 61-87 70-96 (240)
26 2d9m_A Zinc finger CCCH-type d 92.0 0.071 2.4E-06 32.6 1.8 32 52-84 11-43 (69)
27 2l0z_A Glycoprotein G2; zinc-b 42.3 22 0.00076 19.4 2.5 23 47-69 9-31 (42)
28 2odm_A YLAN, UPF0358 protein M 37.6 3.5 0.00012 26.3 -1.4 16 88-103 34-49 (91)
29 2gbo_A UPF0358 protein EF2458; 30.9 3.9 0.00013 26.6 -2.0 16 88-103 36-51 (104)
30 2y8n_B 4-hydroxyphenylacetate 29.1 14 0.00047 23.3 0.3 42 32-74 2-46 (86)
No 1
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-21 Score=123.55 Aligned_cols=68 Identities=74% Similarity=1.424 Sum_probs=64.5
Q ss_pred CCcccccccccCCCCCCCCCCCCccCCCCcccccccccccccCCCCCCCCCCCCCCCCCcCcHHHHhh
Q psy4296 31 DRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHIDPDSMIEASVGMVHR 98 (103)
Q Consensus 31 ~~~~vC~~fl~G~C~~Gd~C~f~H~~~~~~~p~C~~f~~~G~C~~~~C~y~H~~~~~~~~~C~~f~~~ 98 (103)
.++.+|+||++|.|++|++|+|+|+++..++++|+||++.|.|.+++|+|+|+.|+.++++|++|..+
T Consensus 8 ~k~~~C~~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~~~~C~f~H~~~~~~~~~C~~f~~g 75 (77)
T 2d9n_A 8 EKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWSGPS 75 (77)
T ss_dssp CTTSBCHHHHTTCCSCTTSSSSBCSCCTTTSCBCHHHHHTCCCCCSSCSSBCCCTTSSCSSSSCCTTT
T ss_pred CcceeCHhHccCcCCCCCCCCCccccccCcCCCCcccCCCCccCCCCeeccCCCccccCCCCcccccC
Confidence 68899999999999999999999999999999999999989999889999999999999999999865
No 2
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.79 E-value=3e-20 Score=116.58 Aligned_cols=62 Identities=81% Similarity=1.648 Sum_probs=55.4
Q ss_pred CCCCCCcccccccccCCCCCCCCCCCCccCCCCcccccccccccccCCCCCCCCCCCCCCCC
Q psy4296 27 HITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHIDPDSM 88 (103)
Q Consensus 27 H~~~~~~~vC~~fl~G~C~~Gd~C~f~H~~~~~~~p~C~~f~~~G~C~~~~C~y~H~~~~~~ 88 (103)
|....+.++|+||++|.|++|++|+|+|+++..++++|+||+++|.|++++|+|+|+.|+++
T Consensus 10 ~~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~~~~C~y~H~~p~~k 71 (72)
T 2rhk_C 10 HMSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYSKFGECSNKECPFLHIDPESK 71 (72)
T ss_dssp SSSCCCCSBCHHHHTTCCCCGGGSSSBCSCCTTSCCBCHHHHHHSCCSBTTCCSBCCCCC--
T ss_pred cCCCCcCeeCHHHhcCCCCCCCCCCCccccccccCCcccccCCCCCCCCCCeeccCCCcccc
Confidence 33347889999999999999999999999999999999999998999999999999998765
No 3
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-17 Score=108.81 Aligned_cols=66 Identities=24% Similarity=0.615 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCCCcccccccccCCCCCCC-CCCCCccCC-------CCcccccccccccccCCCCCCCCCCCCCC
Q psy4296 20 LVPFPLRHITGDRSVVCKHWLRGLCKKGD-QCEFLHEYD-------MTKMPECYFYSRFNACHNKECPFLHIDPD 86 (103)
Q Consensus 20 g~~C~f~H~~~~~~~vC~~fl~G~C~~Gd-~C~f~H~~~-------~~~~p~C~~f~~~G~C~~~~C~y~H~~~~ 86 (103)
+..++..+..+++..||++|++|.|.+|| .|+|+|+.+ ..++++|++|++ |.|++++|+|.|+.+.
T Consensus 7 ~~~~~~K~~~~~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flk-G~C~r~~C~y~H~~~~ 80 (98)
T 2e5s_A 7 GSTATQKLLRTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIK-GRCMREKCKYFHPPAH 80 (98)
T ss_dssp CSSCCCCCCCSSEEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHH-TCCCCTTCCSBCCCHH
T ss_pred CccccccccChhhhhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhcc-CCCCCCCcCccCChHH
Confidence 34677777777899999999999999998 799999975 357899999999 9999999999998753
No 4
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.59 E-value=2.2e-16 Score=98.13 Aligned_cols=54 Identities=31% Similarity=0.819 Sum_probs=48.1
Q ss_pred CCcccccccccCCCCCCC-CCCCCccCC-------CCcccccccccccccCCCCCCCCCCCCC
Q psy4296 31 DRSVVCKHWLRGLCKKGD-QCEFLHEYD-------MTKMPECYFYSRFNACHNKECPFLHIDP 85 (103)
Q Consensus 31 ~~~~vC~~fl~G~C~~Gd-~C~f~H~~~-------~~~~p~C~~f~~~G~C~~~~C~y~H~~~ 85 (103)
.+..||++|++|.|.+|+ .|+|+|+.. ..++++|++|++ |.|++++|+|+|+.+
T Consensus 4 ~k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flk-G~C~r~~C~y~H~~~ 65 (70)
T 3d2q_A 4 DRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIK-GRCSREKCKYFHPPA 65 (70)
T ss_dssp CEEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHT-TCCCCTTCCSBCCCH
T ss_pred ccchhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCc-CCCCCCCcCeeCCHH
Confidence 577899999999999999 599999753 456899999999 999999999999864
No 5
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-15 Score=99.16 Aligned_cols=66 Identities=24% Similarity=0.564 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCCcccccccccCCCCCCC-CCCCCccCCC-----CcccccccccccccCCCCCCCCCCCCCC
Q psy4296 20 LVPFPLRHITGDRSVVCKHWLRGLCKKGD-QCEFLHEYDM-----TKMPECYFYSRFNACHNKECPFLHIDPD 86 (103)
Q Consensus 20 g~~C~f~H~~~~~~~vC~~fl~G~C~~Gd-~C~f~H~~~~-----~~~p~C~~f~~~G~C~~~~C~y~H~~~~ 86 (103)
+..++++++...+.+||+.|++|.|.+|| .|+|+|.... .++++|.+|++ |.|++++|+|.|..+.
T Consensus 4 ~~~~~~~~~~~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~~~~~~vC~dflk-G~C~r~~Cky~H~~~h 75 (89)
T 2rpp_A 4 GSSGPVRDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSLK-GRCSRENCKYLHPPTH 75 (89)
T ss_dssp CCCSCCCSCSSSEECBCHHHHHTCCCCCTTTSSSBCCCSSSCCBTTBEEBCHHHHH-TCCCCTTCCSBCCCHH
T ss_pred cccccccCCCcchhhhchHHhcCCCCCCCCCCCCcCCCccccccCCceeeehhhhh-CcCCCCCcceecCHHH
Confidence 45788888876789999999999999998 9999998764 47899999999 9999999999998653
No 6
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.55 E-value=1.3e-15 Score=100.37 Aligned_cols=65 Identities=20% Similarity=0.531 Sum_probs=54.6
Q ss_pred CCCCC--CCCcccccccccCCCCCCCCCCCCccCCCCcccccccccccccCCC-CCCCCCCCCCCCCCcCcHH
Q psy4296 25 LRHIT--GDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHN-KECPFLHIDPDSMIEASVG 94 (103)
Q Consensus 25 f~H~~--~~~~~vC~~fl~G~C~~Gd~C~f~H~~~~~~~p~C~~f~~~G~C~~-~~C~y~H~~~~~~~~~C~~ 94 (103)
|+|+. +.++.+|+||++|.|++|++|+|+|+ .++|++|+..|.|.+ ++|+|.|......++.|..
T Consensus 3 ~sH~~~~~~k~~lC~~f~~G~C~~G~~C~f~H~-----~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~l~ 70 (98)
T 2cqe_A 3 SGSSGELPKKRELCKFYITGFCARAENCPYMHG-----DFPCKLYHTTGNCINGDDCMFSHDPLTEETRELLD 70 (98)
T ss_dssp CCCCCCCSCCCSBCTTTTTTCCSCSTTCSSBSS-----SSBCSHHHHTSCCSSCTTCSSBCCCCCHHHHHHHH
T ss_pred ccccCCCCCCCccCcccccCcCCCCCCCCCCCC-----CCcCcCcccCCcCCCCCCCcccCCCCcccchhHHh
Confidence 78886 36899999999999999999999998 567999975599999 4999999976655555543
No 7
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=99.48 E-value=1.6e-14 Score=92.81 Aligned_cols=55 Identities=27% Similarity=0.709 Sum_probs=48.9
Q ss_pred CCcccccccccCCCCCCC-CCCCCccCC-----CCcccccccccccccCCCCCCCCCCCCCC
Q psy4296 31 DRSVVCKHWLRGLCKKGD-QCEFLHEYD-----MTKMPECYFYSRFNACHNKECPFLHIDPD 86 (103)
Q Consensus 31 ~~~~vC~~fl~G~C~~Gd-~C~f~H~~~-----~~~~p~C~~f~~~G~C~~~~C~y~H~~~~ 86 (103)
.+.+||++|++|.|.+|| .|+|+|... ..++++|.+|++ |.|.++.|+|.|..+.
T Consensus 7 ~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~~~~~~~vC~dflk-G~C~r~~C~y~H~~~~ 67 (83)
T 3d2n_A 7 LTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLK-GRCSRENCKYLHPPPH 67 (83)
T ss_dssp GEEEBCTTGGGTCCCSCTTTCSSBCCCTTCCEETTEEECCHHHHT-TCCCCSSCSSCCCCHH
T ss_pred ccchhcHHHhcCCCCCCCCCCCCcCCCccccccCCceeehhHhhh-ccccCCCcceeCChHH
Confidence 477899999999999997 999999975 345899999999 9999999999998653
No 8
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.7e-13 Score=86.37 Aligned_cols=58 Identities=19% Similarity=0.375 Sum_probs=50.0
Q ss_pred CCCcCCCCC---CCCCCCCCCC-CCccccccccc-CCCCCCCCCCCCccCCCCcccccccccccc
Q psy4296 12 PSFQAPGVL---VPFPLRHITG-DRSVVCKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSRFN 71 (103)
Q Consensus 12 p~f~~~g~g---~~C~f~H~~~-~~~~vC~~fl~-G~C~~Gd~C~f~H~~~~~~~p~C~~f~~~G 71 (103)
.+|++.|.+ +.|+|+|+.. .++++|+||++ |.|. |+.|+|+|.....++++|.+|++ |
T Consensus 13 C~~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~~~~C~~f~~-g 75 (77)
T 2d9n_A 13 CKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECS-NKECPFLHIDPESKIKDCPWSGP-S 75 (77)
T ss_dssp CHHHHTTCCSCTTSSSSBCSCCTTTSCBCHHHHHTCCCC-CSSCSSBCCCTTSSCSSSSCCTT-T
T ss_pred CHhHccCcCCCCCCCCCccccccCcCCCCcccCCCCccC-CCCeeccCCCccccCCCCccccc-C
Confidence 346667775 7899999963 57789999999 9999 78999999998888999999998 5
No 9
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.29 E-value=1.1e-12 Score=81.61 Aligned_cols=55 Identities=22% Similarity=0.597 Sum_probs=25.8
Q ss_pred CCcccccccc-cCCCCCCCCCCCCccCCCCc---------ccccccccccccCCCC-CCCCCCCCC
Q psy4296 31 DRSVVCKHWL-RGLCKKGDQCEFLHEYDMTK---------MPECYFYSRFNACHNK-ECPFLHIDP 85 (103)
Q Consensus 31 ~~~~vC~~fl-~G~C~~Gd~C~f~H~~~~~~---------~p~C~~f~~~G~C~~~-~C~y~H~~~ 85 (103)
.++.+|++|+ .|.|.+|++|.|+|+..... ..+|++|...|.|.++ +|+|.|...
T Consensus 10 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 10 YKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp CCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC--------------------------------
T ss_pred ccchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 6889999997 79999999999999875432 4679977766999995 999999864
No 10
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.86 E-value=3.6e-10 Score=70.37 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=38.8
Q ss_pred CCCcCCCCC---CCCCCCCCC-CCCccccccccc-CCCCCCCCCCCCccCCCC
Q psy4296 12 PSFQAPGVL---VPFPLRHIT-GDRSVVCKHWLR-GLCKKGDQCEFLHEYDMT 59 (103)
Q Consensus 12 p~f~~~g~g---~~C~f~H~~-~~~~~vC~~fl~-G~C~~Gd~C~f~H~~~~~ 59 (103)
.+|++.|.+ +.|+|+|+. ..++++|+||++ |.|.+ ++|+|+|.....
T Consensus 19 Ck~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 19 CKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp CHHHHTTCCCCGGGSSSBCSCCTTSCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred CHHHhcCCCCCCCCCCCccccccccCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 357777875 789999996 367889999999 99999 899999986544
No 11
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.80 E-value=1.6e-09 Score=71.04 Aligned_cols=49 Identities=29% Similarity=0.459 Sum_probs=39.7
Q ss_pred CCCcCCCCC---CCCCCCCCCCCCcccccccc-cCCCCCCCCCCCCccCCCCccccc
Q psy4296 12 PSFQAPGVL---VPFPLRHITGDRSVVCKHWL-RGLCKKGDQCEFLHEYDMTKMPEC 64 (103)
Q Consensus 12 p~f~~~g~g---~~C~f~H~~~~~~~vC~~fl-~G~C~~Gd~C~f~H~~~~~~~p~C 64 (103)
.+|+..|.+ +.|+|+|+ ..+|++|+ +|.|.+|+.|+|+|......++.|
T Consensus 16 C~~f~~G~C~~G~~C~f~H~----~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~ 68 (98)
T 2cqe_A 16 CKFYITGFCARAENCPYMHG----DFPCKLYHTTGNCINGDDCMFSHDPLTEETREL 68 (98)
T ss_dssp CTTTTTTCCSCSTTCSSBSS----SSBCSHHHHTSCCSSCTTCSSBCCCCCHHHHHH
T ss_pred CcccccCcCCCCCCCCCCCC----CCcCcCcccCCcCCCCCCCcccCCCCcccchhH
Confidence 357777875 78999999 67899996 899999999999999765544433
No 12
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.78 E-value=1.2e-09 Score=67.50 Aligned_cols=43 Identities=19% Similarity=0.491 Sum_probs=35.7
Q ss_pred CCcCCCCC---C-CCCCCCCC--------CCCcccccccccCCCCCCCCCCCCccC
Q psy4296 13 SFQAPGVL---V-PFPLRHIT--------GDRSVVCKHWLRGLCKKGDQCEFLHEY 56 (103)
Q Consensus 13 ~f~~~g~g---~-~C~f~H~~--------~~~~~vC~~fl~G~C~~Gd~C~f~H~~ 56 (103)
++++.|++ + .|+|+|+. +.++++|++|++|.|.+| +|+|+|..
T Consensus 10 ~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~-~C~y~H~~ 64 (70)
T 3d2q_A 10 REYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSRE-KCKYFHPP 64 (70)
T ss_dssp HHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCT-TCCSBCCC
T ss_pred HHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCC-CcCeeCCH
Confidence 45677776 5 59999974 246889999999999999 89999974
No 13
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=2.8e-09 Score=70.02 Aligned_cols=44 Identities=18% Similarity=0.460 Sum_probs=37.5
Q ss_pred CCcCCCCC---C-CCCCCCCCC--------CCcccccccccCCCCCCCCCCCCccCC
Q psy4296 13 SFQAPGVL---V-PFPLRHITG--------DRSVVCKHWLRGLCKKGDQCEFLHEYD 57 (103)
Q Consensus 13 ~f~~~g~g---~-~C~f~H~~~--------~~~~vC~~fl~G~C~~Gd~C~f~H~~~ 57 (103)
++|..|++ + .|+|+|+.. .+.++|++|++|.|.++ +|+|+|...
T Consensus 24 r~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 24 REFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMRE-KCKYFHPPA 79 (98)
T ss_dssp SHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred HHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCC-CcCccCChH
Confidence 57777887 3 699999963 57889999999999999 899999754
No 14
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.53 E-value=4.1e-08 Score=62.67 Aligned_cols=44 Identities=23% Similarity=0.446 Sum_probs=36.5
Q ss_pred CCcCCCCC---C-CCCCCCCCC------CCcccccccccCCCCCCCCCCCCccCC
Q psy4296 13 SFQAPGVL---V-PFPLRHITG------DRSVVCKHWLRGLCKKGDQCEFLHEYD 57 (103)
Q Consensus 13 ~f~~~g~g---~-~C~f~H~~~------~~~~vC~~fl~G~C~~Gd~C~f~H~~~ 57 (103)
++|++|++ + .|+|+|+.. .+.++|.+|++|.|.++ +|+|+|...
T Consensus 13 r~FlrG~C~r~d~~C~f~H~~~~~~~~~~~~~vC~dflkG~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 13 REFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRE-NCKYLHPPP 66 (83)
T ss_dssp TTGGGTCCCSCTTTCSSBCCCTTCCEETTEEECCHHHHTTCCCCS-SCSSCCCCH
T ss_pred HHHhcCCCCCCCCCCCCcCCCccccccCCceeehhHhhhccccCC-CcceeCChH
Confidence 45666886 3 999999963 35899999999999998 799999754
No 15
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.29 E-value=1.2e-07 Score=61.25 Aligned_cols=43 Identities=23% Similarity=0.463 Sum_probs=35.2
Q ss_pred CcCCCCC---C-CCCCCCCCC------CCcccccccccCCCCCCCCCCCCccCC
Q psy4296 14 FQAPGVL---V-PFPLRHITG------DRSVVCKHWLRGLCKKGDQCEFLHEYD 57 (103)
Q Consensus 14 f~~~g~g---~-~C~f~H~~~------~~~~vC~~fl~G~C~~Gd~C~f~H~~~ 57 (103)
.|++|++ + .|+|+|+.. .+.++|.+|++|.|.++ +|+|+|...
T Consensus 22 dFlrG~C~r~d~~CrfsH~~~~~~v~~~~~~vC~dflkG~C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 22 QFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSLKGRCSRE-NCKYLHPPT 74 (89)
T ss_dssp HHHHTCCCCCTTTSSSBCCCSSSCCBTTBEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred HHhcCCCCCCCCCCCCcCCCccccccCCceeeehhhhhCcCCCC-CcceecCHH
Confidence 4455775 4 899999964 37899999999999998 799999754
No 16
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.25 E-value=3.7e-07 Score=56.27 Aligned_cols=44 Identities=23% Similarity=0.605 Sum_probs=12.6
Q ss_pred CcCCCCC---CCCCCCCCCC----------CCcccccccc-cCCCCCCCCCCCCccCC
Q psy4296 14 FQAPGVL---VPFPLRHITG----------DRSVVCKHWL-RGLCKKGDQCEFLHEYD 57 (103)
Q Consensus 14 f~~~g~g---~~C~f~H~~~----------~~~~vC~~fl-~G~C~~Gd~C~f~H~~~ 57 (103)
|...|.+ +.|+|.|+.. .++.+|++|+ .|.|.+|+.|.|+|...
T Consensus 18 f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 18 YSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp GGGTSCCTTTTTCSSCSSSCCGGGTC--------------------------------
T ss_pred hhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 4356764 8999999963 1357998555 79999999999999753
No 17
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=97.33 E-value=5.3e-07 Score=57.31 Aligned_cols=62 Identities=24% Similarity=0.448 Sum_probs=47.4
Q ss_pred cCCCCcCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCccCCCCcccccccccccccCCCCCCCCCCC
Q psy4296 10 QDPSFQAPGVLVPFPLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83 (103)
Q Consensus 10 ~~p~f~~~g~g~~C~f~H~~~~~~~vC~~fl~G~C~~Gd~C~f~H~~~~~~~p~C~~f~~~G~C~~~~C~y~H~ 83 (103)
+..+|...-....|+|.|.. ...+|++++ .|++- .|.|.|.. ...|+|+. .|++.+|+|.|.
T Consensus 10 e~CKf~~~Ctn~~C~f~Hp~--~~~~Cr~g~--~C~~~-~C~f~HP~----~~~Crf~~---~C~n~~C~F~Hp 71 (80)
T 2lhn_A 10 EQCKFGTHCTNKRCKYRHAR--SHIMCREGA--NCTRI-DCLFGHPI----NEDCRFGV---NCKNIYCLFRHP 71 (80)
Confidence 34456665555899999984 456899886 89985 59999952 23599885 599999999994
No 18
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.53 E-value=6.1e-05 Score=55.94 Aligned_cols=42 Identities=31% Similarity=0.717 Sum_probs=28.0
Q ss_pred cccccccccC-----CCCCCCCCCCCccCCCCcccccccccccccCCCCCCCCCCCC
Q psy4296 33 SVVCKHWLRG-----LCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHID 84 (103)
Q Consensus 33 ~~vC~~fl~G-----~C~~Gd~C~f~H~~~~~~~p~C~~f~~~G~C~~~~C~y~H~~ 84 (103)
..||.+| +| .|+.++.|..+| +|++|++ |.|....|...|..
T Consensus 151 PeiC~~Y-kG~g~~g~C~~~~~C~kLH--------IC~~Fl~-G~C~f~~CkRsH~~ 197 (229)
T 3u9g_A 151 PEICKSY-KGEGRKQTCGQPQPCERLH--------ICEHFTR-GNCSYLNCLRSHNL 197 (229)
T ss_dssp CCBCTTC-CCSSSCCSCSSSSCCCSBC--------SCHHHHT-TCCCCSSCSSCCCT
T ss_pred chHHHHh-CCCCCCCcCCCCCCCccee--------ccchhhc-CCcCCCCccCccCc
Confidence 3467777 63 676666677766 4777777 77776677777765
No 19
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=96.64 E-value=1.4e-05 Score=50.63 Aligned_cols=44 Identities=23% Similarity=0.462 Sum_probs=36.9
Q ss_pred CCcccccccccCCCCCCCCCCCCccCCCCcccccccccccccCCCCCCCCCCC
Q psy4296 31 DRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83 (103)
Q Consensus 31 ~~~~vC~~fl~G~C~~Gd~C~f~H~~~~~~~p~C~~f~~~G~C~~~~C~y~H~ 83 (103)
+..+.|+||. .|++ +.|+|.|... .++|+|+. .|++.+|.|.|-
T Consensus 7 ~~~e~CKf~~--~Ctn-~~C~f~Hp~~---~~~Cr~g~---~C~~~~C~f~HP 50 (80)
T 2lhn_A 7 KSLEQCKFGT--HCTN-KRCKYRHARS---HIMCREGA---NCTRIDCLFGHP 50 (80)
Confidence 5678899998 8999 7899999642 35799995 599999999994
No 20
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.09 E-value=0.00027 Score=52.46 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=29.4
Q ss_pred CCCC--CCCCCCCCCCCCcccccccccCCCCCCCCCCCCccCCC
Q psy4296 17 PGVL--VPFPLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDM 58 (103)
Q Consensus 17 ~g~g--~~C~f~H~~~~~~~vC~~fl~G~C~~Gd~C~f~H~~~~ 58 (103)
+|.| ..|.|...= .+.-||++|++|.|+. .+|.-+|+...
T Consensus 158 kG~g~~g~C~~~~~C-~kLHIC~~Fl~G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 158 KGEGRKQTCGQPQPC-ERLHICEHFTRGNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp CCSSSCCSCSSSSCC-CSBCSCHHHHTTCCCC-SSCSSCCCTTS
T ss_pred CCCCCCCcCCCCCCC-cceeccchhhcCCcCC-CCccCccCccC
Confidence 5554 677777664 5777888888888888 57888887644
No 21
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=97.07 E-value=0.00028 Score=40.94 Aligned_cols=28 Identities=25% Similarity=0.617 Sum_probs=21.5
Q ss_pred CCccccccccc-CCCCCCCCCCCCccCCC
Q psy4296 31 DRSVVCKHWLR-GLCKKGDQCEFLHEYDM 58 (103)
Q Consensus 31 ~~~~vC~~fl~-G~C~~Gd~C~f~H~~~~ 58 (103)
..+.||+-|.. |.|.+|.+|+++|+.++
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDISG 46 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCCC
Confidence 46778866664 88888888888888765
No 22
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.97 E-value=0.00051 Score=42.36 Aligned_cols=33 Identities=27% Similarity=0.689 Sum_probs=26.2
Q ss_pred CCCCCCCCCcccccccccCCCCCCCCCCCCccCC
Q psy4296 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYD 57 (103)
Q Consensus 24 ~f~H~~~~~~~vC~~fl~G~C~~Gd~C~f~H~~~ 57 (103)
.++... .+..+|+.|+.|.|..|+.|.|.|...
T Consensus 12 ~~R~P~-~k~~LC~~~~~G~C~~G~~C~FAHG~~ 44 (69)
T 2d9m_A 12 QHRFPT-GYFSICDRYMNGTCPEGNSCKFAHGNA 44 (69)
T ss_dssp CCCCCC-SCCSBCHHHHHSCCSSCSSCSSBSSHH
T ss_pred cccCCC-CCcccCcccCcCCCCCCCccCCcCCHH
Confidence 344432 567999999999999999999999743
No 23
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.47 E-value=0.00062 Score=50.51 Aligned_cols=27 Identities=30% Similarity=0.785 Sum_probs=23.5
Q ss_pred CcccccccccCCCCCCCCCCCCccCCC
Q psy4296 32 RSVVCKHWLRGLCKKGDQCEFLHEYDM 58 (103)
Q Consensus 32 ~~~vC~~fl~G~C~~Gd~C~f~H~~~~ 58 (103)
+..+|-||.+|.|.+|++|+|+|....
T Consensus 69 ~~~~C~ffakG~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 69 QLFFCLFFAKGMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp CCSBCHHHHTTCCSCGGGCSSBBSCCC
T ss_pred CCeEcCccccCCCCCCCCCCccCCCCC
Confidence 455999999999999999999998543
No 24
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.34 E-value=0.014 Score=33.70 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=27.1
Q ss_pred CCCCccCC-CCcccccccccccccCCCC-CCCCCCCCC
Q psy4296 50 CEFLHEYD-MTKMPECYFYSRFNACHNK-ECPFLHIDP 85 (103)
Q Consensus 50 C~f~H~~~-~~~~p~C~~f~~~G~C~~~-~C~y~H~~~ 85 (103)
|-+.+... .....+|.-|..+|+|.++ +|+++|...
T Consensus 8 cclp~~~~~~~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 8 CCLPPATHRPHPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCCCTTSCCCCCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccCCCcccCccccchhhhccccccCCCCCCCCccccCC
Confidence 44444322 2467889999999999996 999999853
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=95.17 E-value=0.0041 Score=46.05 Aligned_cols=26 Identities=31% Similarity=0.796 Sum_probs=22.6
Q ss_pred ccccccccccccCCCC-CCCCCCCCCCC
Q psy4296 61 MPECYFYSRFNACHNK-ECPFLHIDPDS 87 (103)
Q Consensus 61 ~p~C~~f~~~G~C~~~-~C~y~H~~~~~ 87 (103)
..+|.||.+ |.|.+| +|+|+|..|..
T Consensus 70 ~~~C~ffak-G~C~~G~~C~y~H~lPt~ 96 (240)
T 3u1l_A 70 LFFCLFFAK-GMCCLGPKCEYLHHIPDE 96 (240)
T ss_dssp CSBCHHHHT-TCCSCGGGCSSBBSCCCH
T ss_pred CeEcCcccc-CCCCCCCCCCccCCCCCc
Confidence 347999999 999996 89999998863
No 26
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.98 E-value=0.071 Score=32.65 Aligned_cols=32 Identities=22% Similarity=0.545 Sum_probs=24.7
Q ss_pred CCccCCCCcccccccccccccCCCC-CCCCCCCC
Q psy4296 52 FLHEYDMTKMPECYFYSRFNACHNK-ECPFLHID 84 (103)
Q Consensus 52 f~H~~~~~~~p~C~~f~~~G~C~~~-~C~y~H~~ 84 (103)
..|.....+...|..|.. |.|..+ .|.|.|-.
T Consensus 11 W~~R~P~~k~~LC~~~~~-G~C~~G~~C~FAHG~ 43 (69)
T 2d9m_A 11 WQHRFPTGYFSICDRYMN-GTCPEGNSCKFAHGN 43 (69)
T ss_dssp CCCCCCCSCCSBCHHHHH-SCCSSCSSCSSBSSH
T ss_pred ccccCCCCCcccCcccCc-CCCCCCCccCCcCCH
Confidence 344445566788999966 999995 99999963
No 27
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=42.28 E-value=22 Score=19.36 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=11.4
Q ss_pred CCCCCCCccCCCCcccccccccc
Q psy4296 47 GDQCEFLHEYDMTKMPECYFYSR 69 (103)
Q Consensus 47 Gd~C~f~H~~~~~~~p~C~~f~~ 69 (103)
|+.||.-|.++....=.|-+|..
T Consensus 9 Ge~CPkPHRL~~~~~C~CG~y~~ 31 (42)
T 2l0z_A 9 GEACPLPHRLNSLGGCRCGKYPN 31 (42)
T ss_dssp SSSCCTTSCCCTTSSBTTTTBCC
T ss_pred CCCCCCCceecCCceeccccccC
Confidence 45566666554443333444443
No 28
>2odm_A YLAN, UPF0358 protein MW0995; triple helix, unknown function; 2.24A {Staphylococcus aureus subsp}
Probab=37.59 E-value=3.5 Score=26.29 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=11.2
Q ss_pred CCcCcHHHHhhhccCC
Q psy4296 88 MIEASVGMVHRVDTGM 103 (103)
Q Consensus 88 ~~~~C~~f~~~~~~~~ 103 (103)
.++.|+.|...|||+|
T Consensus 34 ~~~qCPlyEEVlDTQm 49 (91)
T 2odm_A 34 TLPSCPLYEEVLDTQM 49 (91)
T ss_dssp ----CCSHHHHHHHHH
T ss_pred CccCCchHHHHHHHHH
Confidence 4688999999999987
No 29
>2gbo_A UPF0358 protein EF2458; structural genomics, hypothetical protein, PSI, protein STRU initiative, midwest center for structural genomics; 2.20A {Enterococcus faecalis} SCOP: a.23.6.1
Probab=30.92 E-value=3.9 Score=26.62 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=13.7
Q ss_pred CCcCcHHHHhhhccCC
Q psy4296 88 MIEASVGMVHRVDTGM 103 (103)
Q Consensus 88 ~~~~C~~f~~~~~~~~ 103 (103)
.++.|+.|...|||+|
T Consensus 36 ~~~qCPlyEEVlDTQm 51 (104)
T 2gbo_A 36 CISQCKAFEEVVDTQM 51 (104)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CccCCchHHHHHHHHH
Confidence 3578999999999987
No 30
>2y8n_B 4-hydroxyphenylacetate decarboxylase small subuni; lyase, radical chemistry, metalloenzyme, iron-sulfur center; 1.75A {Clostridium scatologenes} PDB: 2yaj_B*
Probab=29.12 E-value=14 Score=23.26 Aligned_cols=42 Identities=21% Similarity=0.465 Sum_probs=31.4
Q ss_pred CcccccccccCCCCCCCCCCCCccCCCCc---ccccccccccccCC
Q psy4296 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTK---MPECYFYSRFNACH 74 (103)
Q Consensus 32 ~~~vC~~fl~G~C~~Gd~C~f~H~~~~~~---~p~C~~f~~~G~C~ 74 (103)
+..-|.+|+.=-|.+| -|..++...+-. .|+|.-|.....|.
T Consensus 2 kh~dC~n~~~lD~~KG-~C~~s~~~V~iDge~~~~C~~F~~~~KCk 46 (86)
T 2y8n_B 2 RHYDCKNYINLDCEKG-LCALTKGMVPIDGEGSEACPNFKPAEKCG 46 (86)
T ss_dssp BGGGBTTEEECSSSEE-EETTTCCEEESSSTTCBCCTTCCBCCBGG
T ss_pred Ccccccccchhhhhhh-hhhhcCCeEEecCCCCccchhcccccccc
Confidence 3456888888888888 599999876655 78888887755555
Done!