Your job contains 1 sequence.
>psy4296
MGKCCAGIIQDPSFQAPGVLVPFPLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTK
MPECYFYSRFNACHNKECPFLHIDPDSMIEASVGMVHRVDTGM
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4296
(103 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0015621 - symbol:Clp "Clipper" species:7227 "Droso... 363 2.5e-33 1
UNIPROTKB|E1BV31 - symbol:CPSF4 "Uncharacterized protein"... 339 8.8e-31 1
UNIPROTKB|O19137 - symbol:CPSF4 "Cleavage and polyadenyla... 339 8.8e-31 1
UNIPROTKB|E2RBM0 - symbol:CPSF4 "Uncharacterized protein"... 339 8.8e-31 1
UNIPROTKB|J9P398 - symbol:CPSF4 "Uncharacterized protein"... 339 8.8e-31 1
UNIPROTKB|B7Z7B0 - symbol:CPSF4 "Cleavage and polyadenyla... 339 8.8e-31 1
UNIPROTKB|C9K0K2 - symbol:CPSF4 "Cleavage and polyadenyla... 339 8.8e-31 1
UNIPROTKB|H7C016 - symbol:CPSF4 "Cleavage and polyadenyla... 339 8.8e-31 1
UNIPROTKB|O95639 - symbol:CPSF4 "Cleavage and polyadenyla... 339 8.8e-31 1
UNIPROTKB|F1REX3 - symbol:LOC100518830 "Uncharacterized p... 339 8.8e-31 1
UNIPROTKB|I3LCK9 - symbol:LOC100738395 "Uncharacterized p... 339 8.8e-31 1
UNIPROTKB|Q66KE3 - symbol:cpsf4 "Cleavage and polyadenyla... 339 8.8e-31 1
UNIPROTKB|Q6DJP7 - symbol:cpsf4 "Cleavage and polyadenyla... 339 8.8e-31 1
RGD|620440 - symbol:Cpsf4 "cleavage and polyadenylation s... 339 8.8e-31 1
UNIPROTKB|D4A905 - symbol:Cpsf4 "Cleavage and polyadenyla... 339 8.8e-31 1
ZFIN|ZDB-GENE-990415-180 - symbol:cpsf4 "cleavage and pol... 339 8.8e-31 1
WB|WBGene00044329 - symbol:cpsf-4 species:6239 "Caenorhab... 318 1.5e-28 1
UNIPROTKB|A6NMK7 - symbol:CPSF4L "Putative cleavage and p... 285 4.6e-25 1
UNIPROTKB|F1LWJ4 - symbol:F1LWJ4 "Uncharacterized protein... 282 9.7e-25 1
DICTYBASE|DDB_G0270148 - symbol:cpsf4 "cleavage and polya... 268 2.9e-23 1
UNIPROTKB|H9KVA5 - symbol:CPSF4L "Putative cleavage and p... 258 3.4e-22 1
UNIPROTKB|E2RBK7 - symbol:CPSF4 "Uncharacterized protein"... 257 4.3e-22 1
UNIPROTKB|C9JEV9 - symbol:CPSF4 "Cleavage and polyadenyla... 257 4.3e-22 1
MGI|MGI:1861602 - symbol:Cpsf4 "cleavage and polyadenylat... 257 4.3e-22 1
CGD|CAL0005897 - symbol:YTH1 species:5476 "Candida albica... 236 7.2e-20 1
UNIPROTKB|Q59T36 - symbol:YTH1 "mRNA 3'-end-processing pr... 236 7.2e-20 1
POMBASE|SPAC227.08c - symbol:yth1 "mRNA cleavage and poly... 224 1.4e-18 1
SGD|S000006311 - symbol:YTH1 "Essential RNA-binding compo... 220 3.6e-18 1
ASPGD|ASPL0000062209 - symbol:AN0298 species:162425 "Emer... 174 2.7e-13 1
TAIR|locus:2028175 - symbol:CPSF30 "AT1G30460" species:37... 176 1.9e-12 1
UNIPROTKB|F1NHU3 - symbol:ZC3H3 "Uncharacterized protein"... 124 3.3e-07 1
MGI|MGI:2663721 - symbol:Zc3h3 "zinc finger CCCH type con... 117 8.2e-07 2
ZFIN|ZDB-GENE-030131-9399 - symbol:zc3h3 "zinc finger CCC... 124 1.2e-06 1
UNIPROTKB|F1PNB5 - symbol:ZC3H3 "Uncharacterized protein"... 123 1.4e-06 1
UNIPROTKB|I3LVF0 - symbol:I3LVF0 "Uncharacterized protein... 116 3.2e-06 1
RGD|1307276 - symbol:Zc3h3 "zinc finger CCCH type contain... 117 7.0e-06 1
MGI|MGI:1926001 - symbol:Zc3h6 "zinc finger CCCH type con... 103 7.2e-06 2
UNIPROTKB|F1MXR8 - symbol:ZC3H3 "Uncharacterized protein"... 116 8.9e-06 1
UNIPROTKB|Q8IXZ2 - symbol:ZC3H3 "Zinc finger CCCH domain-... 116 8.9e-06 1
POMBASE|SPBC337.12 - symbol:SPBC337.12 "human ZC3H3 homol... 110 1.1e-05 1
UNIPROTKB|E1BVA5 - symbol:CPSF4L "Uncharacterized protein... 104 2.7e-05 1
UNIPROTKB|E2REH2 - symbol:MKRN2 "Uncharacterized protein"... 107 2.7e-05 1
UNIPROTKB|Q9H000 - symbol:MKRN2 "Probable E3 ubiquitin-pr... 107 2.7e-05 1
FB|FBgn0035900 - symbol:ZC3H3 "ZC3H3" species:7227 "Droso... 109 2.8e-05 1
UNIPROTKB|Q8N5P1 - symbol:ZC3H8 "Zinc finger CCCH domain-... 104 3.2e-05 1
UNIPROTKB|Q17QY2 - symbol:ZC3H8 "Zinc finger CCCH-type co... 104 3.4e-05 1
UNIPROTKB|F1SUA1 - symbol:ZC3H8 "Uncharacterized protein"... 104 3.5e-05 1
UNIPROTKB|D4A5G7 - symbol:LOC678741 "Protein LOC678741" s... 111 4.2e-05 1
UNIPROTKB|E2RSL2 - symbol:ZC3H4 "Uncharacterized protein"... 111 4.3e-05 1
UNIPROTKB|Q9UPT8 - symbol:ZC3H4 "Zinc finger CCCH domain-... 111 4.4e-05 1
MGI|MGI:2682314 - symbol:Zc3h4 "zinc finger CCCH-type con... 111 4.4e-05 1
UNIPROTKB|E1BHZ4 - symbol:ZC3H4 "Uncharacterized protein"... 111 4.4e-05 1
UNIPROTKB|F1PWF3 - symbol:ZC3H6 "Uncharacterized protein"... 110 5.0e-05 1
UNIPROTKB|F1MCW9 - symbol:ZC3H6 "Uncharacterized protein"... 110 5.0e-05 1
UNIPROTKB|F1SUA3 - symbol:ZC3H6 "Uncharacterized protein"... 110 5.1e-05 1
UNIPROTKB|P61129 - symbol:ZC3H6 "Zinc finger CCCH domain-... 110 5.1e-05 1
UNIPROTKB|E2RFS8 - symbol:ZC3H8 "Uncharacterized protein"... 104 5.3e-05 1
TAIR|locus:2164660 - symbol:EMB1789 "embryo defective 178... 107 5.4e-05 1
TAIR|locus:2043413 - symbol:AT2G47680 species:3702 "Arabi... 108 6.9e-05 1
MGI|MGI:1930128 - symbol:Zc3h8 "zinc finger CCCH type con... 101 7.4e-05 1
RGD|1310458 - symbol:Zc3h8 "zinc finger CCCH type contain... 101 7.4e-05 1
UNIPROTKB|Q6GLD9 - symbol:mkrn2 "Probable E3 ubiquitin-pr... 103 7.5e-05 1
ZFIN|ZDB-GENE-020213-2 - symbol:mkrn2 "makorin, ring fing... 102 9.5e-05 1
UNIPROTKB|E1C259 - symbol:ZC3H6 "Uncharacterized protein"... 107 0.00011 1
RGD|1311197 - symbol:Mkrn3 "makorin, ring finger protein,... 77 0.00012 3
MGI|MGI:1914277 - symbol:Mkrn2 "makorin, ring finger prot... 101 0.00012 1
RGD|1310618 - symbol:Mkrn2 "makorin, ring finger protein,... 101 0.00012 1
ZFIN|ZDB-GENE-030131-5954 - symbol:mkrn4 "makorin, ring f... 100 0.00015 1
FB|FBgn0029152 - symbol:Mkrn1 "Makorin 1" species:7227 "D... 82 0.00016 2
UNIPROTKB|Q13064 - symbol:MKRN3 "Probable E3 ubiquitin-pr... 79 0.00016 2
UNIPROTKB|B0F0H3 - symbol:mkrn2 "Probable E3 ubiquitin-pr... 99 0.00020 1
TAIR|locus:2155904 - symbol:AT5G49200 species:3702 "Arabi... 99 0.00020 1
UNIPROTKB|Q9PTI4 - symbol:MKRN1 "Uncharacterized protein"... 99 0.00024 1
MGI|MGI:2444912 - symbol:Mbnl3 "muscleblind-like 3 (Droso... 97 0.00024 1
UNIPROTKB|F1LTU5 - symbol:Zc3h6 "Protein Zc3h6" species:1... 103 0.00028 1
UNIPROTKB|Q9UHC7 - symbol:MKRN1 "E3 ubiquitin-protein lig... 98 0.00032 1
UNIPROTKB|F1NI93 - symbol:MKRN2 "Uncharacterized protein"... 96 0.00042 1
ZFIN|ZDB-GENE-020213-1 - symbol:mkrn1 "makorin, ring fing... 96 0.00046 1
TAIR|locus:2831040 - symbol:AT3G08505 species:3702 "Arabi... 94 0.00047 1
ASPGD|ASPL0000046029 - symbol:AN1537 species:162425 "Emer... 96 0.00050 1
UNIPROTKB|E1B8I9 - symbol:MBNL3 "Uncharacterized protein"... 94 0.00051 1
UNIPROTKB|C9J7K5 - symbol:MKRN1 "E3 ubiquitin-protein lig... 85 0.00072 1
ASPGD|ASPL0000040300 - symbol:AN3447 species:162425 "Emer... 95 0.00080 1
UNIPROTKB|C9JCX1 - symbol:MBNL1 "Muscleblind-like protein... 85 0.00085 1
MGI|MGI:1859353 - symbol:Mkrn1 "makorin, ring finger prot... 94 0.00085 1
UNIPROTKB|G3V789 - symbol:Mkrn1 "Protein Mkrn1" species:1... 94 0.00085 1
UNIPROTKB|F1SRP7 - symbol:MKRN1 "Uncharacterized protein"... 94 0.00086 1
DICTYBASE|DDB_G0279181 - symbol:DDB_G0279181 species:4468... 95 0.00091 1
>FB|FBgn0015621 [details] [associations]
symbol:Clp "Clipper" species:7227 "Drosophila melanogaster"
[GO:0004521 "endoribonuclease activity" evidence=IDA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0006378
"mRNA polyadenylation" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0022008
GO:GO:0046872 GO:GO:0008270 GO:GO:0006378 GO:GO:0003676
GO:GO:0004521 Gene3D:4.10.60.10 GO:GO:0005847 GO:GO:0006379
EMBL:U26549 ProteinModelPortal:Q24081 SMR:Q24081 STRING:Q24081
PRIDE:Q24081 FlyBase:FBgn0015621 InParanoid:Q24081
OrthoDB:EOG4XKSPS ArrayExpress:Q24081 Bgee:Q24081 Uniprot:Q24081
Length = 296
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 59/67 (88%), Positives = 63/67 (94%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI GDR++VCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI
Sbjct: 58 PFRHIRGDRTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 117
Query: 84 DPDSMIE 90
DP S ++
Sbjct: 118 DPQSKVK 124
>UNIPROTKB|E1BV31 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0005847 CTD:10898
GeneTree:ENSGT00390000009627 KO:K14404 OMA:PLDQVTC
EMBL:AADN02023770 IPI:IPI00572429 RefSeq:XP_414800.1
UniGene:Gga.12217 Ensembl:ENSGALT00000007510 GeneID:416494
KEGG:gga:416494 NextBio:20819939 Uniprot:E1BV31
Length = 243
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C NKECPFLHI
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 115
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 116 DPESKIK 122
>UNIPROTKB|O19137 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation specificity
factor subunit 4" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084 HSSP:P47974
GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108 EMBL:U96448
IPI:IPI00715166 RefSeq:NP_776367.1 UniGene:Bt.55595
ProteinModelPortal:O19137 SMR:O19137 STRING:O19137
Ensembl:ENSBTAT00000002701 GeneID:280875 KEGG:bta:280875 CTD:10898
GeneTree:ENSGT00390000009627 InParanoid:O19137 KO:K14404
OMA:PLDQVTC OrthoDB:EOG4KH2VQ NextBio:20805014 Uniprot:O19137
Length = 243
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C NKECPFLHI
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 115
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 116 DPESKIK 122
>UNIPROTKB|E2RBM0 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00390000009627 EMBL:AAEX03004276
Ensembl:ENSCAFT00000023887 NextBio:20862973 Uniprot:E2RBM0
Length = 164
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C NKECPFLHI
Sbjct: 54 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 113
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 114 DPESKIK 120
>UNIPROTKB|J9P398 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
CTD:10898 GeneTree:ENSGT00390000009627 KO:K14404 OMA:PLDQVTC
EMBL:AAEX03004276 RefSeq:XP_850149.1 ProteinModelPortal:J9P398
Ensembl:ENSCAFT00000043832 GeneID:489859 KEGG:cfa:489859
Uniprot:J9P398
Length = 269
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C NKECPFLHI
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 115
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 116 DPESKIK 122
>UNIPROTKB|B7Z7B0 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000212457
HOVERGEN:HBG051108 OrthoDB:EOG4KH2VQ UniGene:Hs.489287
HGNC:HGNC:2327 EMBL:AC073063 EMBL:AK301745 IPI:IPI00924476
SMR:B7Z7B0 STRING:B7Z7B0 Ensembl:ENST00000441580 UCSC:uc011kix.2
Uniprot:B7Z7B0
Length = 191
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C NKECPFLHI
Sbjct: 3 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 62
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 63 DPESKIK 69
>UNIPROTKB|C9K0K2 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0008270 GO:GO:0003676 HOGENOM:HOG000212457
HGNC:HGNC:2327 EMBL:AC073063 IPI:IPI01014332
ProteinModelPortal:C9K0K2 SMR:C9K0K2 STRING:C9K0K2
Ensembl:ENST00000412686 ArrayExpress:C9K0K2 Bgee:C9K0K2
Uniprot:C9K0K2
Length = 112
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C NKECPFLHI
Sbjct: 3 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 62
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 63 DPESKIK 69
>UNIPROTKB|H7C016 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0008270 GO:GO:0003676 HGNC:HGNC:2327
EMBL:AC073063 ProteinModelPortal:H7C016 Ensembl:ENST00000452047
Bgee:H7C016 Uniprot:H7C016
Length = 229
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C NKECPFLHI
Sbjct: 23 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 82
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 83 DPESKIK 89
>UNIPROTKB|O95639 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0019048
"virus-host interaction" evidence=TAS] [GO:0019054 "modulation by
virus of host cellular process" evidence=TAS] [GO:0019058 "viral
infectious cycle" evidence=TAS] [GO:0046778 "modification by virus
of host mRNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000571 InterPro:IPR001878
Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158
SMART:SM00343 SMART:SM00356 GO:GO:0005739 Reactome:REACT_116125
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
EMBL:CH236956 EMBL:CH471091 GO:GO:0019058 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG5084 GO:GO:0005847 HOGENOM:HOG000212457
HOVERGEN:HBG051108 CTD:10898 KO:K14404 OMA:PLDQVTC
OrthoDB:EOG4KH2VQ EMBL:U79569 EMBL:CR542161 EMBL:EF191081
EMBL:BC003101 EMBL:BC050738 IPI:IPI00009137 IPI:IPI00029707
IPI:IPI00375469 RefSeq:NP_001075028.1 RefSeq:NP_006684.1
UniGene:Hs.489287 PDB:2D9N PDB:2RHK PDBsum:2D9N PDBsum:2RHK
ProteinModelPortal:O95639 SMR:O95639 DIP:DIP-48675N IntAct:O95639
MINT:MINT-1429837 STRING:O95639 PhosphoSite:O95639 PaxDb:O95639
PRIDE:O95639 DNASU:10898 Ensembl:ENST00000292476
Ensembl:ENST00000436336 GeneID:10898 KEGG:hsa:10898 UCSC:uc003uqi.3
UCSC:uc003uqj.3 UCSC:uc003uqk.3 GeneCards:GC07P099036
HGNC:HGNC:2327 HPA:HPA049094 MIM:603052 neXtProt:NX_O95639
PharmGKB:PA26844 InParanoid:O95639 PhylomeDB:O95639
EvolutionaryTrace:O95639 GenomeRNAi:10898 NextBio:41385
ArrayExpress:O95639 Bgee:O95639 CleanEx:HS_CPSF4
Genevestigator:O95639 GermOnline:ENSG00000160917 GO:GO:0046778
Uniprot:O95639
Length = 269
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C NKECPFLHI
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 115
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 116 DPESKIK 122
>UNIPROTKB|F1REX3 [details] [associations]
symbol:LOC100518830 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000009627 KO:K14404 EMBL:FP102617
RefSeq:XP_003124350.1 Ensembl:ENSSSCT00000008355 GeneID:100518830
KEGG:ssc:100518830 OMA:MQDIVAS Uniprot:F1REX3
Length = 269
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C NKECPFLHI
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 115
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 116 DPESKIK 122
>UNIPROTKB|I3LCK9 [details] [associations]
symbol:LOC100738395 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000009627 OMA:PLDQVTC EMBL:FP103031
Ensembl:ENSSSCT00000031676 Uniprot:I3LCK9
Length = 243
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C NKECPFLHI
Sbjct: 30 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 89
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 90 DPESKIK 96
>UNIPROTKB|Q66KE3 [details] [associations]
symbol:cpsf4 "Cleavage and polyadenylation specificity
factor subunit 4" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] InterPro:IPR000571 InterPro:IPR001878
Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158
SMART:SM00343 SMART:SM00356 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
eggNOG:COG5084 GO:GO:0042462 GO:GO:0005847 HOVERGEN:HBG051108
CTD:10898 KO:K14404 OrthoDB:EOG4KH2VQ EMBL:BC080440
RefSeq:NP_001007933.1 UniGene:Str.3196 ProteinModelPortal:Q66KE3
SMR:Q66KE3 STRING:Q66KE3 GeneID:493312 KEGG:xtr:493312
Xenbase:XB-GENE-948302 InParanoid:Q66KE3 Bgee:Q66KE3 Uniprot:Q66KE3
Length = 269
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C NKECPFLHI
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 115
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 116 DPESKIK 122
>UNIPROTKB|Q6DJP7 [details] [associations]
symbol:cpsf4 "Cleavage and polyadenylation specificity
factor subunit 4" species:8355 "Xenopus laevis" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0005847
HOVERGEN:HBG051108 CTD:10898 KO:K14404 EMBL:BC075128
RefSeq:NP_001086337.1 UniGene:Xl.25683 ProteinModelPortal:Q6DJP7
SMR:Q6DJP7 GeneID:444766 KEGG:xla:444766 Xenbase:XB-GENE-948308
Uniprot:Q6DJP7
Length = 269
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C NKECPFLHI
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 115
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 116 DPESKIK 122
>RGD|620440 [details] [associations]
symbol:Cpsf4 "cleavage and polyadenylation specific factor 4"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 RGD:620440 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084
HSSP:P47974 GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108
CTD:10898 GeneTree:ENSGT00390000009627 KO:K14404 OrthoDB:EOG4KH2VQ
EMBL:BC089824 IPI:IPI00553898 RefSeq:NP_001012351.1
UniGene:Rn.104788 ProteinModelPortal:Q5FVR7 SMR:Q5FVR7
Ensembl:ENSRNOT00000042474 GeneID:304277 KEGG:rno:304277
InParanoid:Q5FVR7 NextBio:652764 ArrayExpress:Q5FVR7
Genevestigator:Q5FVR7 GermOnline:ENSRNOG00000025217 Uniprot:Q5FVR7
Length = 243
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C NKECPFLHI
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 115
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 116 DPESKIK 122
>UNIPROTKB|D4A905 [details] [associations]
symbol:Cpsf4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 RGD:620440 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000009627
OMA:PLDQVTC OrthoDB:EOG4KH2VQ IPI:IPI00358639
Ensembl:ENSRNOT00000038958 Uniprot:D4A905
Length = 243
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C NKECPFLHI
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 115
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 116 DPESKIK 122
>ZFIN|ZDB-GENE-990415-180 [details] [associations]
symbol:cpsf4 "cleavage and polyadenylation specific
factor 4" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0042462 "eye photoreceptor cell development" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356
ZFIN:ZDB-GENE-990415-180 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084 GO:GO:0042462
HOGENOM:HOG000212457 HOVERGEN:HBG051108 CTD:10898 KO:K14404
OrthoDB:EOG4KH2VQ EMBL:U70479 EMBL:BC045289 IPI:IPI00630205
RefSeq:NP_571084.1 UniGene:Dr.75095 SMR:Q98881 STRING:Q98881
GeneID:30203 KEGG:dre:30203 InParanoid:Q98881 NextBio:20806666
Uniprot:Q98881
Length = 271
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C NKECPFLHI
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHI 115
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 116 DPESKIK 122
>WB|WBGene00044329 [details] [associations]
symbol:cpsf-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0051301 "cell division"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040027 "negative
regulation of vulval development" evidence=IMP] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0009792
GO:GO:0002119 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0000910 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084
GO:GO:0040027 HOGENOM:HOG000212457 GeneTree:ENSGT00390000009627
KO:K14404 OMA:PLDQVTC EMBL:Z68297 RefSeq:NP_001023126.1
ProteinModelPortal:Q7YTG9 SMR:Q7YTG9 IntAct:Q7YTG9
MINT:MINT-6669146 STRING:Q7YTG9 PaxDb:Q7YTG9
EnsemblMetazoa:F11A10.8 GeneID:178151 KEGG:cel:CELE_F11A10.8
UCSC:F11A10.8 CTD:178151 WormBase:F11A10.8 InParanoid:Q7YTG9
NextBio:899930 Uniprot:Q7YTG9
Length = 302
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 49/67 (73%), Positives = 63/67 (94%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
PLRHI G+++VVCKHWLRGLCKKGDQCEFLHEYD+TKMPEC+F+S+++AC N+ECPF HI
Sbjct: 70 PLRHIDGEKAVVCKHWLRGLCKKGDQCEFLHEYDLTKMPECFFFSKYSACSNRECPFRHI 129
Query: 84 DPDSMIE 90
DP++ ++
Sbjct: 130 DPETKMK 136
>UNIPROTKB|A6NMK7 [details] [associations]
symbol:CPSF4L "Putative cleavage and polyadenylation
specificity factor subunit 4-like protein" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 eggNOG:COG5084 EMBL:AC087301 EMBL:BC157870
IPI:IPI00376104 RefSeq:NP_001123357.1 UniGene:Hs.534707
ProteinModelPortal:A6NMK7 SMR:A6NMK7 PhosphoSite:A6NMK7
PRIDE:A6NMK7 Ensembl:ENST00000344935 GeneID:642843 KEGG:hsa:642843
UCSC:uc010dfk.1 CTD:642843 GeneCards:GC17M071244 HGNC:HGNC:33632
HPA:HPA044047 neXtProt:NX_A6NMK7 PharmGKB:PA162382768
HOGENOM:HOG000212457 HOVERGEN:HBG051108 OMA:HVKPASK
GenomeRNAi:642843 NextBio:114229 Bgee:A6NMK7 CleanEx:HS_CPSF4L
Genevestigator:A6NMK7 Uniprot:A6NMK7
Length = 179
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 47/68 (69%), Positives = 55/68 (80%)
Query: 18 GVLVPFPLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKE 77
G L PF RH G++ VVCKHWLRGLCKKGD C+FLH+YD+T+MPECYFYS+F C NKE
Sbjct: 52 GKLCPF--RHDRGEKMVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKE 109
Query: 78 CPFLHIDP 85
C FLH+ P
Sbjct: 110 CSFLHVKP 117
Score = 92 (37.4 bits), Expect = 0.00021, P = 0.00021
Identities = 24/73 (32%), Positives = 33/73 (45%)
Query: 10 QDPSFQAPGVLVPFPLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSR 69
+D Q L+PF + + S VC + +GLC+KG C F H+ KM C + R
Sbjct: 17 KDVEMQKGTGLLPF--QGMDKSASAVCNFFTKGLCEKGKLCPFRHDRG-EKMVVCKHWLR 73
Query: 70 FNACHNKECPFLH 82
C FLH
Sbjct: 74 GLCKKGDHCKFLH 86
>UNIPROTKB|F1LWJ4 [details] [associations]
symbol:F1LWJ4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00390000009627 IPI:IPI00776496
Ensembl:ENSRNOT00000029618 Uniprot:F1LWJ4
Length = 243
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 45/67 (67%), Positives = 58/67 (86%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P HI+G+++VVC+HWLRGLCKKGDQCEFLH+YD+TKM ECYFYS+F C K+C F+H+
Sbjct: 57 PFCHISGEKTVVCQHWLRGLCKKGDQCEFLHKYDITKMLECYFYSKFWKCSGKDCSFVHM 116
Query: 84 DPDSMIE 90
DP+S I+
Sbjct: 117 DPESKIK 123
>DICTYBASE|DDB_G0270148 [details] [associations]
symbol:cpsf4 "cleavage and polyadenylation
specificity factor 30 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 dictyBase:DDB_G0270148
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0006378 GO:GO:0003723 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG5084 GO:GO:0005847 GO:GO:0006379
KO:K14404 RefSeq:XP_646578.1 ProteinModelPortal:Q55CA3 SMR:Q55CA3
STRING:Q55CA3 EnsemblProtists:DDB0233701 GeneID:8617548
KEGG:ddi:DDB_G0270148 InParanoid:Q55CA3 OMA:ECMYLHV
ProtClustDB:CLSZ2437480 Uniprot:Q55CA3
Length = 372
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 40/66 (60%), Positives = 54/66 (81%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P +H +R+VVCKHWLRGLCKKG+ CEFLHEYD+ KMPECYF+S+ C+N+EC +LH+
Sbjct: 53 PYKHTKAERAVVCKHWLRGLCKKGELCEFLHEYDLQKMPECYFFSKHGECNNQECMYLHV 112
Query: 84 DPDSMI 89
+P+ +
Sbjct: 113 NPEEKV 118
>UNIPROTKB|H9KVA5 [details] [associations]
symbol:CPSF4L "Putative cleavage and
polyadenylation-specificity factor subunit 4-like protein"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 EMBL:AC087301 HGNC:HGNC:33632
ProteinModelPortal:H9KVA5 SMR:H9KVA5 PRIDE:H9KVA5
Ensembl:ENST00000397671 Bgee:H9KVA5 Uniprot:H9KVA5
Length = 152
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 40/52 (76%), Positives = 46/52 (88%)
Query: 34 VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHIDP 85
VVCKHWLRGLCKKGD C+FLH+YD+T+MPECYFYS+F C NKEC FLH+ P
Sbjct: 2 VVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKECSFLHVKP 53
>UNIPROTKB|E2RBK7 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0005847 GeneTree:ENSGT00390000009627
EMBL:AAEX03004276 Ensembl:ENSCAFT00000023892 Uniprot:E2RBK7
Length = 212
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 42/54 (77%), Positives = 49/54 (90%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNA-CHNK 76
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C ++
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHR 109
>UNIPROTKB|C9JEV9 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0005739 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000212457 HGNC:HGNC:2327 EMBL:AC073063 IPI:IPI00927478
ProteinModelPortal:C9JEV9 SMR:C9JEV9 STRING:C9JEV9
Ensembl:ENST00000451876 ArrayExpress:C9JEV9 Bgee:C9JEV9
Uniprot:C9JEV9
Length = 211
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 42/54 (77%), Positives = 49/54 (90%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNA-CHNK 76
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C ++
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHR 109
>MGI|MGI:1861602 [details] [associations]
symbol:Cpsf4 "cleavage and polyadenylation specific factor
4" species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
MGI:MGI:1861602 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084
GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108 CTD:10898
GeneTree:ENSGT00390000009627 KO:K14404 OrthoDB:EOG4KH2VQ
EMBL:AK046064 EMBL:AF033201 EMBL:BC057067 IPI:IPI00309761
IPI:IPI00380450 IPI:IPI01027761 RefSeq:NP_848671.1
UniGene:Mm.196884 ProteinModelPortal:Q8BQZ5 SMR:Q8BQZ5
STRING:Q8BQZ5 PhosphoSite:Q8BQZ5 PaxDb:Q8BQZ5 PRIDE:Q8BQZ5
Ensembl:ENSMUST00000070487 GeneID:54188 KEGG:mmu:54188
UCSC:uc009amj.1 ChiTaRS:CPSF4 NextBio:311022 Bgee:Q8BQZ5
CleanEx:MM_CPSF4 Genevestigator:Q8BQZ5
GermOnline:ENSMUSG00000029625 Uniprot:Q8BQZ5
Length = 211
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 42/54 (77%), Positives = 49/54 (90%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNA-CHNK 76
P RHI+G+++VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYS+F C ++
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGPLCRHR 109
>CGD|CAL0005897 [details] [associations]
symbol:YTH1 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 CGD:CAL0005897
GO:GO:0005634 GO:GO:0042493 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003723 eggNOG:COG5084 KO:K14404
EMBL:AACQ01000145 EMBL:AACQ01000144 RefSeq:XP_712810.1
RefSeq:XP_712839.1 ProteinModelPortal:Q59T36 SMR:Q59T36
STRING:Q59T36 GeneID:3645540 GeneID:3645572 KEGG:cal:CaO19.14170
KEGG:cal:CaO19.6881 Uniprot:Q59T36
Length = 215
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 40/69 (57%), Positives = 49/69 (71%)
Query: 24 PLRHITG--DRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNAC-HNKECPF 80
P +H++ +VCKHWLRGLCKKGD CEFLHEY++ KMPEC FYS+ C EC +
Sbjct: 57 PNKHVSAMYSNKIVCKHWLRGLCKKGDHCEFLHEYNLRKMPECLFYSKNGYCTQTSECLY 116
Query: 81 LHIDPDSMI 89
LH+DP S I
Sbjct: 117 LHVDPQSKI 125
>UNIPROTKB|Q59T36 [details] [associations]
symbol:YTH1 "mRNA 3'-end-processing protein YTH1"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 CGD:CAL0005897 GO:GO:0005634 GO:GO:0042493
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
eggNOG:COG5084 KO:K14404 EMBL:AACQ01000145 EMBL:AACQ01000144
RefSeq:XP_712810.1 RefSeq:XP_712839.1 ProteinModelPortal:Q59T36
SMR:Q59T36 STRING:Q59T36 GeneID:3645540 GeneID:3645572
KEGG:cal:CaO19.14170 KEGG:cal:CaO19.6881 Uniprot:Q59T36
Length = 215
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 40/69 (57%), Positives = 49/69 (71%)
Query: 24 PLRHITG--DRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNAC-HNKECPF 80
P +H++ +VCKHWLRGLCKKGD CEFLHEY++ KMPEC FYS+ C EC +
Sbjct: 57 PNKHVSAMYSNKIVCKHWLRGLCKKGDHCEFLHEYNLRKMPECLFYSKNGYCTQTSECLY 116
Query: 81 LHIDPDSMI 89
LH+DP S I
Sbjct: 117 LHVDPQSKI 125
>POMBASE|SPAC227.08c [details] [associations]
symbol:yth1 "mRNA cleavage and polyadenylation
specificity factor complex Yth1" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IDA] [GO:0006378 "mRNA polyadenylation"
evidence=IC] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
PomBase:SPAC227.08c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0006378
GO:GO:0003723 eggNOG:COG5084 GO:GO:0005847 HOGENOM:HOG000212457
KO:K14404 OrthoDB:EOG4PG99D PIR:T50164 RefSeq:NP_592962.1
ProteinModelPortal:Q9UTD1 SMR:Q9UTD1 STRING:Q9UTD1
EnsemblFungi:SPAC227.08c.1 GeneID:2541506 KEGG:spo:SPAC227.08c
NextBio:20802605 Uniprot:Q9UTD1
Length = 170
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 33 SVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHN-KECPFLHIDPDSMI 89
SVVCKHWLRGLCKKG+QC+FLHEY++ KMP C+FY+ C N +EC +LH+DP +
Sbjct: 51 SVVCKHWLRGLCKKGEQCDFLHEYNLKKMPPCHFYAERGWCSNGEECLYLHLDPSKQV 108
>SGD|S000006311 [details] [associations]
symbol:YTH1 "Essential RNA-binding component of cleavage and
polyadenylation factor" species:4932 "Saccharomyces cerevisiae"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0006379 "mRNA
cleavage" evidence=IMP;IDA;TAS] [GO:0006378 "mRNA polyadenylation"
evidence=IDA;IMP;TAS] InterPro:IPR000571 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00356 SGD:S000006311 GO:GO:0046872
GO:GO:0008270 GO:GO:0006378 GO:GO:0003723 EMBL:BK006949
eggNOG:COG5084 GO:GO:0005847 GO:GO:0006379 EMBL:U32445
HOGENOM:HOG000212457 GeneTree:ENSGT00390000009627 KO:K14404
OMA:DPDRPVC OrthoDB:EOG4PG99D EMBL:AY558061 PIR:S59772
RefSeq:NP_015432.1 ProteinModelPortal:Q06102 SMR:Q06102
DIP:DIP-2028N IntAct:Q06102 MINT:MINT-375481 STRING:Q06102
PaxDb:Q06102 PeptideAtlas:Q06102 EnsemblFungi:YPR107C GeneID:856222
KEGG:sce:YPR107C CYGD:YPR107c NextBio:981453 Genevestigator:Q06102
GermOnline:YPR107C Uniprot:Q06102
Length = 208
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 37/69 (53%), Positives = 49/69 (71%)
Query: 24 PLRHITG--DRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNAC-HNKECPF 80
P +H+ +VC+HWLRGLCKK DQCE+LHEY++ KMPEC F+S+ C + +C +
Sbjct: 53 PKKHVLPIFQNKIVCRHWLRGLCKKNDQCEYLHEYNLRKMPECVFFSKNGYCTQSPDCQY 112
Query: 81 LHIDPDSMI 89
LHIDP S I
Sbjct: 113 LHIDPASKI 121
>ASPGD|ASPL0000062209 [details] [associations]
symbol:AN0298 species:162425 "Emericella nidulans"
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 EMBL:BN001308
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
eggNOG:COG5084 EMBL:AACD01000006 HOGENOM:HOG000212457 KO:K14404
RefSeq:XP_657902.1 ProteinModelPortal:Q5BGN2 STRING:Q5BGN2
EnsemblFungi:CADANIAT00002417 GeneID:2876077 KEGG:ani:AN0298.2
OMA:DPDRPVC OrthoDB:EOG4PG99D Uniprot:Q5BGN2
Length = 254
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 34/84 (40%), Positives = 47/84 (55%)
Query: 1 MGKCCAGIIQDPSFQAPGVLVPFPLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTK 60
+G C PS L T S+VCKH+L+GLCKKG +CE+LHEY++ +
Sbjct: 57 LGPACPDRHPTPSRVTTSTTTASGLAPSTTHGSLVCKHFLKGLCKKGMKCEYLHEYNLRR 116
Query: 61 MPECYFYSRFNACHN-KECPFLHI 83
MPEC +SR C N +C + H+
Sbjct: 117 MPECQSFSRSGYCPNGDDCLYQHV 140
>TAIR|locus:2028175 [details] [associations]
symbol:CPSF30 "AT1G30460" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006396 "RNA processing" evidence=RCA;IDA;TAS]
[GO:0004519 "endonuclease activity" evidence=IDA] [GO:0004521
"endoribonuclease activity" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=IMP] [GO:0006979 "response to oxidative
stress" evidence=IMP] [GO:1900363 "regulation of mRNA
polyadenylation" evidence=IMP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006397 "mRNA processing" evidence=RCA]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0006979 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006378 EMBL:AC009917 GO:GO:0003723
GO:GO:0005516 GO:GO:0004521 eggNOG:COG5084 GO:GO:0005847 KO:K14404
EMBL:EU250988 EMBL:AY140901 IPI:IPI00527840 IPI:IPI00846485
PIR:B86429 PIR:C86429 RefSeq:NP_001077629.1 RefSeq:NP_174334.2
UniGene:At.40546 UniGene:At.69479 ProteinModelPortal:A9LNK9
SMR:A9LNK9 IntAct:A9LNK9 STRING:A9LNK9 PaxDb:A9LNK9 PRIDE:A9LNK9
EnsemblPlants:AT1G30460.1 GeneID:839925 KEGG:ath:AT1G30460
TAIR:At1g30460 HOGENOM:HOG000242019 InParanoid:A9LNK9 OMA:AKMTSRI
PhylomeDB:A9LNK9 ProtClustDB:CLSN2714254 Genevestigator:A9LNK9
GO:GO:1900363 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
Uniprot:A9LNK9
Length = 631
Score = 176 (67.0 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHIDPD 86
R VC+HWLRGLC KGD C FLH++D +MP C F+ + C ++C + H + D
Sbjct: 62 RQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQDCVYKHTNED 116
>UNIPROTKB|F1NHU3 [details] [associations]
symbol:ZC3H3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0005634
GO:GO:0008270 GO:GO:0006378 GO:GO:0003676
GeneTree:ENSGT00390000009627 GO:GO:0016973 GO:GO:0010793
EMBL:AADN02037362 EMBL:AADN02037363 IPI:IPI00580233
Ensembl:ENSGALT00000028087 OMA:CNRGESC Uniprot:F1NHU3
Length = 377
Score = 124 (48.7 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 31 DRSVVCKHWLRGLCKKGD-QCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
++ VC +LRG CKK D +C F H+ KMP C ++ + C+N CP+ H+
Sbjct: 137 EKVAVCTRFLRGTCKKTDGKCPFSHKVSKDKMPVCSYFLK-GICNNSNCPYSHV 189
>MGI|MGI:2663721 [details] [associations]
symbol:Zc3h3 "zinc finger CCCH type containing 3"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010793
"regulation of mRNA export from nucleus" evidence=ISO] [GO:0016973
"poly(A)+ mRNA export from nucleus" evidence=ISO] [GO:0031124 "mRNA
3'-end processing" evidence=IDA] [GO:0032927 "positive regulation
of activin receptor signaling pathway" evidence=IGI] [GO:0046332
"SMAD binding" evidence=IPI] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0070412 "R-SMAD binding" evidence=IDA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
MGI:MGI:2663721 GO:GO:0046872 GO:GO:0008270 GO:GO:0006378
GO:GO:0003676 GO:GO:0032927 eggNOG:COG5084 GO:GO:0070412
GO:GO:0005847 GeneTree:ENSGT00390000009627 GO:GO:0016973
GO:GO:0010793 CTD:23144 HOGENOM:HOG000133053 HOVERGEN:HBG055611
OMA:TSLPGDK OrthoDB:EOG40ZQX1 EMBL:AJ516034 EMBL:BC049953
EMBL:BC060682 IPI:IPI00742388 RefSeq:NP_742119.1 UniGene:Mm.209800
ProteinModelPortal:Q8CHP0 SMR:Q8CHP0 PhosphoSite:Q8CHP0
PRIDE:Q8CHP0 Ensembl:ENSMUST00000100538 GeneID:223642
KEGG:mmu:223642 InParanoid:Q8CHP0 NextBio:376766 Bgee:Q8CHP0
CleanEx:MM_ZC3H3 Genevestigator:Q8CHP0
GermOnline:ENSMUSG00000075600 Uniprot:Q8CHP0
Length = 950
Score = 117 (46.2 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 31 DRSVVCKHWLRGLCKKGD-QCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
++ VC ++RG CKK D C F H KMP C ++ + C N CP+ H+
Sbjct: 690 EKVAVCTRFVRGTCKKTDGSCPFSHHVSKEKMPVCSYFLK-GICSNSNCPYSHV 742
Score = 33 (16.7 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 20 LVPFPLRHITGDR 32
L P P R +GDR
Sbjct: 404 LSPVPSRPTSGDR 416
>ZFIN|ZDB-GENE-030131-9399 [details] [associations]
symbol:zc3h3 "zinc finger CCCH-type containing 3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
ZFIN:ZDB-GENE-030131-9399 GO:GO:0008270 GO:GO:0003676
GeneTree:ENSGT00390000009627 CTD:23144 EMBL:CR848029 EMBL:CU694370
IPI:IPI00502745 RefSeq:XP_689680.3 UniGene:Dr.8949
Ensembl:ENSDART00000129803 GeneID:561182 KEGG:dre:561182
NextBio:20883798 Bgee:E7FH07 Uniprot:E7FH07
Length = 929
Score = 124 (48.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 31 DRSVVCKHWLRGLCKKGD-QCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
D+ VC +LRG CKK D C F H+ KMP C ++ + C+N CP+ H+
Sbjct: 721 DKVAVCTRFLRGTCKKTDGTCPFSHKVAKEKMPVCSYFLK-GICNNSSCPYSHV 773
>UNIPROTKB|F1PNB5 [details] [associations]
symbol:ZC3H3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00390000009627 OMA:TSLPGDK
EMBL:AAEX03008930 EMBL:AAEX03008931 Ensembl:ENSCAFT00000002010
Uniprot:F1PNB5
Length = 838
Score = 123 (48.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 31 DRSVVCKHWLRGLCKKGD-QCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
D+ VC +LRG CKK D C F H KMP C ++ + C N CP+ H+
Sbjct: 573 DKVAVCTRFLRGTCKKTDGTCPFSHHVSKEKMPVCSYFLK-GICSNSNCPYSHV 625
>UNIPROTKB|I3LVF0 [details] [associations]
symbol:I3LVF0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00390000009627 EMBL:CU655901
Ensembl:ENSSSCT00000025766 OMA:REGSSAH Uniprot:I3LVF0
Length = 438
Score = 116 (45.9 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 31 DRSVVCKHWLRGLCKKGD-QCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
++ VC ++RG CKK D C F H KMP C ++ + C N CP+ H+
Sbjct: 193 EKVAVCTRFVRGTCKKTDGTCPFSHHVSKEKMPVCSYFLK-GICSNSNCPYSHV 245
>RGD|1307276 [details] [associations]
symbol:Zc3h3 "zinc finger CCCH type containing 3" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=ISO] [GO:0006378 "mRNA polyadenylation" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010793
"regulation of mRNA export from nucleus" evidence=IEA;ISO]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IEA;ISO]
[GO:0031124 "mRNA 3'-end processing" evidence=ISO] [GO:0032927
"positive regulation of activin receptor signaling pathway"
evidence=ISO] [GO:0046332 "SMAD binding" evidence=ISO] [GO:0070412
"R-SMAD binding" evidence=ISO] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 RGD:1307276 GO:GO:0005634
GO:GO:0008270 GO:GO:0006378 GO:GO:0003676
GeneTree:ENSGT00390000009627 GO:GO:0016973 GO:GO:0010793 CTD:23144
OMA:TSLPGDK OrthoDB:EOG40ZQX1 IPI:IPI00361119 RefSeq:NP_001128337.1
UniGene:Rn.198237 Ensembl:ENSRNOT00000010120 GeneID:300032
KEGG:rno:300032 UCSC:RGD:1307276 NextBio:646159 Uniprot:D3ZKY5
Length = 952
Score = 117 (46.2 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 31 DRSVVCKHWLRGLCKKGD-QCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
++ VC ++RG CKK D C F H KMP C ++ + C N CP+ H+
Sbjct: 691 EKVAVCTRFVRGTCKKTDGSCPFSHHVSKEKMPVCSYFLK-GICSNSNCPYSHV 743
>MGI|MGI:1926001 [details] [associations]
symbol:Zc3h6 "zinc finger CCCH type containing 6"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
MGI:MGI:1926001 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5084 EMBL:AL833780 GeneTree:ENSGT00530000063288
HOGENOM:HOG000231733 HOVERGEN:HBG063914 OrthoDB:EOG4CG081
EMBL:AK014766 EMBL:AK039171 EMBL:BC043311 EMBL:BC058173
IPI:IPI00108263 IPI:IPI00761322 UniGene:Mm.26377
ProteinModelPortal:Q8BYK8 SMR:Q8BYK8 PhosphoSite:Q8BYK8
PRIDE:Q8BYK8 Ensembl:ENSMUST00000110319 UCSC:uc008mha.2
InParanoid:Q8BYK8 Bgee:Q8BYK8 CleanEx:MM_ZC3H6
Genevestigator:Q8BYK8 GermOnline:ENSMUSG00000042851 Uniprot:Q8BYK8
Length = 1177
Score = 103 (41.3 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 35 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLH 82
+CK++L G C KGD C+F H+ ++ K E C +Y + + C ++H
Sbjct: 275 ICKYFLEGRCIKGDHCKFNHDAELEKKKEVCKYYLQGYCTKGENCIYMH 323
Score = 94 (38.1 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 35 VCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKE-CPFLHID 84
VCK++L+G C KG+ C ++H ++ P C FY C+ + C F H D
Sbjct: 304 VCKYYLQGYCTKGENCIYMH----SEFP-CKFYHSGAKCYQGDKCKFSHDD 349
Score = 40 (19.1 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 81 LHIDPDSMIEASVGMVHR 98
L +DP S +A + + HR
Sbjct: 920 LSLDPTSAAKAKLSLTHR 937
>UNIPROTKB|F1MXR8 [details] [associations]
symbol:ZC3H3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IEA] [GO:0010793 "regulation of mRNA export from nucleus"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 GO:GO:0008270 GO:GO:0006378 GO:GO:0003676
GeneTree:ENSGT00390000009627 GO:GO:0016973 GO:GO:0010793
OMA:TSLPGDK EMBL:DAAA02037469 EMBL:DAAA02037470 EMBL:DAAA02037471
EMBL:DAAA02037472 IPI:IPI00716772 Ensembl:ENSBTAT00000028621
Uniprot:F1MXR8
Length = 944
Score = 116 (45.9 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 31 DRSVVCKHWLRGLCKKGD-QCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
++ VC ++RG CKK D C F H KMP C ++ + C N CP+ H+
Sbjct: 704 EKVAVCTRFVRGTCKKTDGTCPFSHHVSKEKMPVCSYFLK-GICSNSSCPYSHV 756
>UNIPROTKB|Q8IXZ2 [details] [associations]
symbol:ZC3H3 "Zinc finger CCCH domain-containing protein 3"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0010793 "regulation of mRNA export from nucleus" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=IMP] [GO:0003674 "molecular_function"
evidence=ND] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IMP] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0006378 GO:GO:0003676 eggNOG:COG5084 GO:GO:0016973
EMBL:AC067930 EMBL:AC105118 GO:GO:0010793 EMBL:BC034435
EMBL:BC038670 EMBL:D63484 IPI:IPI00384232 IPI:IPI00410013
RefSeq:NP_055932.2 UniGene:Hs.521915 ProteinModelPortal:Q8IXZ2
SMR:Q8IXZ2 IntAct:Q8IXZ2 STRING:Q8IXZ2 PhosphoSite:Q8IXZ2
DMDM:308153538 PaxDb:Q8IXZ2 PRIDE:Q8IXZ2 Ensembl:ENST00000262577
GeneID:23144 KEGG:hsa:23144 UCSC:uc003yyd.2 CTD:23144
GeneCards:GC08M144519 H-InvDB:HIX0022677 HGNC:HGNC:28972
HPA:HPA023658 neXtProt:NX_Q8IXZ2 PharmGKB:PA134933089
HOGENOM:HOG000133053 HOVERGEN:HBG055611 InParanoid:Q8IXZ2
OMA:TSLPGDK OrthoDB:EOG40ZQX1 PhylomeDB:Q8IXZ2 ChiTaRS:ZC3H3
GenomeRNAi:23144 NextBio:44434 Bgee:Q8IXZ2 CleanEx:HS_ZC3H3
Genevestigator:Q8IXZ2 GermOnline:ENSG00000014164 Uniprot:Q8IXZ2
Length = 948
Score = 116 (45.9 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 31 DRSVVCKHWLRGLCKKGD-QCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
++ VC ++RG CKK D C F H KMP C ++ + C N CP+ H+
Sbjct: 695 EKVAVCTRFVRGTCKKTDGTCPFSHHVSKEKMPVCSYFLK-GICSNSNCPYSHV 747
>POMBASE|SPBC337.12 [details] [associations]
symbol:SPBC337.12 "human ZC3H3 homolog" species:4896
"Schizosaccharomyces pombe" [GO:0005634 "nucleus" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 PomBase:SPBC337.12 GO:GO:0005634
GO:GO:0046872 EMBL:CU329671 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5084 PIR:T40265 RefSeq:NP_595413.2 GeneID:2540291
OrthoDB:EOG4XD71H NextBio:20801421 Uniprot:O74823
Length = 376
Score = 110 (43.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
R +C +L G C K + C HE D ++P C ++ C+N C ++HI
Sbjct: 231 RKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFL-LGKCNNPNCRYVHI 281
>UNIPROTKB|E1BVA5 [details] [associations]
symbol:CPSF4L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158
SMART:SM00343 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
GeneTree:ENSGT00390000009627 EMBL:AADN02030074 IPI:IPI00598491
Ensembl:ENSGALT00000007066 OMA:ECCEGFR Uniprot:E1BVA5
Length = 267
Score = 104 (41.7 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 40 LRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHID 84
L+ L C+FLH+ +MT +PEC F+ + C +++CP H+D
Sbjct: 75 LQALPSWSSGCDFLHKSNMTAIPECCFHFKLYECSSEDCPCPHVD 119
>UNIPROTKB|E2REH2 [details] [associations]
symbol:MKRN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000571
Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GO:GO:0005622 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 GeneTree:ENSGT00390000014093 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:AAEX03012060
Ensembl:ENSCAFT00000007980 Uniprot:E2REH2
Length = 416
Score = 107 (42.7 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHIDPDSMIE 90
+ V C++++ G+C++G+QC F H+ +K C +Y + + C + H P +
Sbjct: 4 KQVTCRYFMHGVCREGNQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHTRPSAAAG 63
Query: 91 ASVG-MVHRVDT 101
+VG M H V +
Sbjct: 64 GAVGTMPHGVSS 75
>UNIPROTKB|Q9H000 [details] [associations]
symbol:MKRN2 "Probable E3 ubiquitin-protein ligase
makorin-2" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005622 "intracellular"
evidence=IDA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 UniPathway:UPA00143
Prosite:PS00518 EMBL:CH471055 GO:GO:0046872 GO:GO:0016874
GO:GO:0008270 GO:GO:0003676 GO:GO:0016567 GO:GO:0005622
Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 HOVERGEN:HBG066965 CTD:23609
OrthoDB:EOG4229K2 InterPro:IPR026293 PANTHER:PTHR11224:SF17
EMBL:AF302084 EMBL:AF277170 EMBL:AF277164 EMBL:AF277165
EMBL:AF277166 EMBL:AF277167 EMBL:AF277168 EMBL:AF277169
EMBL:AF161555 EMBL:AK091318 EMBL:AC018500 EMBL:BC001799
EMBL:BC015715 EMBL:AL834512 IPI:IPI00396406 RefSeq:NP_054879.3
UniGene:Hs.591666 ProteinModelPortal:Q9H000 SMR:Q9H000
IntAct:Q9H000 STRING:Q9H000 PhosphoSite:Q9H000 DMDM:45645205
PRIDE:Q9H000 DNASU:23609 Ensembl:ENST00000170447 GeneID:23609
KEGG:hsa:23609 UCSC:uc003bxd.3 GeneCards:GC03P012598 HGNC:HGNC:7113
HPA:HPA037559 HPA:HPA037560 MIM:608426 neXtProt:NX_Q9H000
PharmGKB:PA30832 InParanoid:Q9H000 OMA:KGYCAYG ChiTaRS:MKRN2
GenomeRNAi:23609 NextBio:46312 ArrayExpress:Q9H000 Bgee:Q9H000
CleanEx:HS_MKRN2 Genevestigator:Q9H000 GermOnline:ENSG00000075975
Uniprot:Q9H000
Length = 416
Score = 107 (42.7 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHIDPDSMIE 90
+ + C++++ G+C++G QC F H+ +K C +Y + + C + H P +
Sbjct: 4 KQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHTRPSAAAG 63
Query: 91 ASVG-MVHRV 99
+VG M H V
Sbjct: 64 GAVGTMAHSV 73
>FB|FBgn0035900 [details] [associations]
symbol:ZC3H3 "ZC3H3" species:7227 "Drosophila melanogaster"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0051168 "nuclear export"
evidence=IMP] [GO:0006378 "mRNA polyadenylation" evidence=IMP]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 GO:GO:0005634
EMBL:AE014296 GO:GO:0008270 GO:GO:0006378 GO:GO:0003676
eggNOG:COG5084 GeneTree:ENSGT00390000009627 GO:GO:0016973
GO:GO:0010793 CTD:23144 EMBL:BT010061 RefSeq:NP_648230.1
UniGene:Dm.15477 SMR:Q9VSK8 EnsemblMetazoa:FBtr0076656 GeneID:38968
KEGG:dme:Dmel_CG6694 UCSC:CG6694-RA FlyBase:FBgn0035900
InParanoid:Q9VSK8 OMA:VCVREDC OrthoDB:EOG45DV5V GenomeRNAi:38968
NextBio:811228 Uniprot:Q9VSK8
Length = 597
Score = 109 (43.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 25/72 (34%), Positives = 35/72 (48%)
Query: 26 RHITGDRSV-VCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHID 84
R + R V +C +LRG C K +C H + KMP C +Y R C ++CP+LH
Sbjct: 392 RKLHDKRQVAICVSFLRGECTK-PKCLLSHNVTLEKMPVCRYYLR-GVCVREDCPYLHKK 449
Query: 85 PDSMIEASVGMV 96
S E + V
Sbjct: 450 LSSKTEICIDFV 461
>UNIPROTKB|Q8N5P1 [details] [associations]
symbol:ZC3H8 "Zinc finger CCCH domain-containing protein 8"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS;IDA] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] [GO:0070245 "positive
regulation of thymocyte apoptotic process" evidence=IMP]
[GO:0046677 "response to antibiotic" evidence=IDA] [GO:0033085
"negative regulation of T cell differentiation in thymus"
evidence=IMP] [GO:0043029 "T cell homeostasis" evidence=IMP]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IMP] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 GO:GO:0006915 GO:GO:0045892 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0046677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003723 GO:GO:0070245 GO:GO:0043029
GO:GO:0033085 EMBL:AF334161 EMBL:BC032001 IPI:IPI00307760
RefSeq:NP_115883.2 UniGene:Hs.418416 ProteinModelPortal:Q8N5P1
SMR:Q8N5P1 IntAct:Q8N5P1 PhosphoSite:Q8N5P1 DMDM:47117585
PaxDb:Q8N5P1 PRIDE:Q8N5P1 DNASU:84524 Ensembl:ENST00000272570
Ensembl:ENST00000409573 GeneID:84524 KEGG:hsa:84524 UCSC:uc021vmw.1
CTD:84524 GeneCards:GC02M112973 H-InvDB:HIX0002377 HGNC:HGNC:30941
HPA:HPA034804 neXtProt:NX_Q8N5P1 PharmGKB:PA134956342
eggNOG:NOG287629 HOGENOM:HOG000231732 HOVERGEN:HBG057407
InParanoid:Q8N5P1 OMA:PKKFRHS OrthoDB:EOG454907 GenomeRNAi:84524
NextBio:74347 ArrayExpress:Q8N5P1 Bgee:Q8N5P1 CleanEx:HS_ZC3H8
Genevestigator:Q8N5P1 GermOnline:ENSG00000144161 Uniprot:Q8N5P1
Length = 291
Score = 104 (41.7 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 35 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLH 82
+CK++L C KGDQC+F H+ ++ K E C FY + + C +LH
Sbjct: 196 ICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLH 244
>UNIPROTKB|Q17QY2 [details] [associations]
symbol:ZC3H8 "Zinc finger CCCH-type containing 8"
species:9913 "Bos taurus" [GO:0070245 "positive regulation of
thymocyte apoptotic process" evidence=IEA] [GO:0046677 "response to
antibiotic" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0043029 "T cell homeostasis"
evidence=IEA] [GO:0033085 "negative regulation of T cell
differentiation in thymus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 GO:GO:0043565
GO:GO:0008270 GO:GO:0046677 GO:GO:0003700 GO:GO:0070245
GO:GO:0043029 GO:GO:0033085 GeneTree:ENSGT00530000063288 CTD:84524
eggNOG:NOG287629 HOGENOM:HOG000231732 HOVERGEN:HBG057407
OMA:PKKFRHS OrthoDB:EOG454907 EMBL:DAAA02030062 EMBL:BC118120
IPI:IPI00685661 RefSeq:NP_001068759.1 UniGene:Bt.29569 SMR:Q17QY2
Ensembl:ENSBTAT00000021230 GeneID:506983 KEGG:bta:506983
InParanoid:Q17QY2 NextBio:20867839 Uniprot:Q17QY2
Length = 303
Score = 104 (41.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 35 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLH 82
+CK++L C KGDQC+F H+ ++ K E C FY + + C +LH
Sbjct: 209 ICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLH 257
>UNIPROTKB|F1SUA1 [details] [associations]
symbol:ZC3H8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070245 "positive regulation of thymocyte apoptotic
process" evidence=IEA] [GO:0046677 "response to antibiotic"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0043029 "T cell homeostasis" evidence=IEA]
[GO:0033085 "negative regulation of T cell differentiation in
thymus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 GO:GO:0043565 GO:GO:0008270
GO:GO:0046677 GO:GO:0003700 GO:GO:0070245 GO:GO:0043029
GO:GO:0033085 GeneTree:ENSGT00530000063288 OMA:PKKFRHS
EMBL:FP326709 Ensembl:ENSSSCT00000008872 Uniprot:F1SUA1
Length = 307
Score = 104 (41.7 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 35 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLH 82
+CK++L C KGDQC+F H+ ++ K E C FY + + C +LH
Sbjct: 213 ICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLH 261
>UNIPROTKB|D4A5G7 [details] [associations]
symbol:LOC678741 "Protein LOC678741" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 CTD:23211 IPI:IPI00950508 RefSeq:XP_001053214.2
Ensembl:ENSRNOT00000065122 GeneID:678741 KEGG:rno:678741
ArrayExpress:D4A5G7 Uniprot:D4A5G7
Length = 1255
Score = 111 (44.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 27 HITGDRS--VVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHI 83
H D+ V+CK+++ G C GD C F H+ ++ K E C FY + CP++H
Sbjct: 335 HQQSDKKGKVICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMHG 394
Query: 84 D 84
D
Sbjct: 395 D 395
>UNIPROTKB|E2RSL2 [details] [associations]
symbol:ZC3H4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00530000063288 OMA:SPNGRPM
EMBL:AAEX03000841 EMBL:AAEX03000842 EMBL:AAEX03000843
EMBL:AAEX03000844 EMBL:AAEX03000845 EMBL:AAEX03000846
EMBL:AAEX03000847 Ensembl:ENSCAFT00000006714 Uniprot:E2RSL2
Length = 1282
Score = 111 (44.1 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 27 HITGDRS--VVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHI 83
H D+ V+CK+++ G C GD C F H+ ++ K E C FY + CP++H
Sbjct: 386 HQQSDKKGKVICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMHG 445
Query: 84 D 84
D
Sbjct: 446 D 446
>UNIPROTKB|Q9UPT8 [details] [associations]
symbol:ZC3H4 "Zinc finger CCCH domain-containing protein 4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 eggNOG:NOG245027
EMBL:AB028987 EMBL:AL050155 IPI:IPI00187011 PIR:T08781
RefSeq:NP_055983.1 UniGene:Hs.104661 PDB:2CQE PDBsum:2CQE
ProteinModelPortal:Q9UPT8 SMR:Q9UPT8 IntAct:Q9UPT8
PhosphoSite:Q9UPT8 DMDM:94707996 PaxDb:Q9UPT8 PRIDE:Q9UPT8
Ensembl:ENST00000253048 GeneID:23211 KEGG:hsa:23211 UCSC:uc002pga.4
CTD:23211 GeneCards:GC19M047569 HGNC:HGNC:17808 HPA:HPA040934
HPA:HPA041068 neXtProt:NX_Q9UPT8 PharmGKB:PA162409534
HOGENOM:HOG000231733 HOVERGEN:HBG108366 InParanoid:Q9UPT8
OMA:SPNGRPM OrthoDB:EOG4Z62N1 ChiTaRS:ZC3H4
EvolutionaryTrace:Q9UPT8 GenomeRNAi:23211 NextBio:44759
PMAP-CutDB:Q9UPT8 Bgee:Q9UPT8 CleanEx:HS_ZC3H4
Genevestigator:Q9UPT8 GermOnline:ENSG00000130749 Uniprot:Q9UPT8
Length = 1303
Score = 111 (44.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 27 HITGDRS--VVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHI 83
H D+ V+CK+++ G C GD C F H+ ++ K E C FY + CP++H
Sbjct: 385 HQQSDKKGKVICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMHG 444
Query: 84 D 84
D
Sbjct: 445 D 445
>MGI|MGI:2682314 [details] [associations]
symbol:Zc3h4 "zinc finger CCCH-type containing 4"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 MGI:MGI:2682314
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 eggNOG:NOG245027
CTD:23211 HOGENOM:HOG000231733 HOVERGEN:HBG108366 OrthoDB:EOG4Z62N1
EMBL:AC148972 EMBL:AK129275 IPI:IPI00625723 IPI:IPI00750931
RefSeq:NP_941033.2 UniGene:Mm.333594 UniGene:Mm.490954
ProteinModelPortal:Q6ZPZ3 SMR:Q6ZPZ3 STRING:Q6ZPZ3
PhosphoSite:Q6ZPZ3 PaxDb:Q6ZPZ3 PRIDE:Q6ZPZ3 GeneID:330474
KEGG:mmu:330474 UCSC:uc009fht.1 UCSC:uc012fah.1 InParanoid:Q6ZPZ3
NextBio:399395 CleanEx:MM_ZC3H4 Genevestigator:Q6ZPZ3
GermOnline:ENSMUSG00000059273 Uniprot:Q6ZPZ3
Length = 1304
Score = 111 (44.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 27 HITGDRS--VVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHI 83
H D+ V+CK+++ G C GD C F H+ ++ K E C FY + CP++H
Sbjct: 384 HQQSDKKGKVICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMHG 443
Query: 84 D 84
D
Sbjct: 444 D 444
>UNIPROTKB|E1BHZ4 [details] [associations]
symbol:ZC3H4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00530000063288 OMA:SPNGRPM
EMBL:DAAA02047406 EMBL:DAAA02047407 IPI:IPI00699712
Ensembl:ENSBTAT00000012237 Uniprot:E1BHZ4
Length = 1305
Score = 111 (44.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 27 HITGDRS--VVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHI 83
H D+ V+CK+++ G C GD C F H+ ++ K E C FY + CP++H
Sbjct: 383 HQQSDKKGKVICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMHG 442
Query: 84 D 84
D
Sbjct: 443 D 443
>UNIPROTKB|F1PWF3 [details] [associations]
symbol:ZC3H6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00530000063288 OMA:IRPQYSD
EMBL:AAEX03010906 Ensembl:ENSCAFT00000011475 Uniprot:F1PWF3
Length = 1166
Score = 110 (43.8 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 35 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLH 82
+CK++L G C KGDQC+F H+ ++ K E C FY + + C ++H
Sbjct: 267 ICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMH 315
>UNIPROTKB|F1MCW9 [details] [associations]
symbol:ZC3H6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00530000063288 OMA:IRPQYSD
EMBL:DAAA02030058 EMBL:DAAA02030059 EMBL:DAAA02030060
EMBL:DAAA02030061 IPI:IPI00710219 Ensembl:ENSBTAT00000027514
Uniprot:F1MCW9
Length = 1169
Score = 110 (43.8 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 35 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLH 82
+CK++L G C KGDQC+F H+ ++ K E C FY + + C ++H
Sbjct: 268 ICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMH 316
>UNIPROTKB|F1SUA3 [details] [associations]
symbol:ZC3H6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00530000063288 OMA:IRPQYSD
EMBL:CU856034 EMBL:CU915661 Ensembl:ENSSSCT00000008869
Uniprot:F1SUA3
Length = 1185
Score = 110 (43.8 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 35 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLH 82
+CK++L G C KGDQC+F H+ ++ K E C FY + + C ++H
Sbjct: 277 ICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMH 325
>UNIPROTKB|P61129 [details] [associations]
symbol:ZC3H6 "Zinc finger CCCH domain-containing protein 6"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:NOG245027 HOGENOM:HOG000231733 EMBL:AC115115 EMBL:AB111887
EMBL:BC155540 EMBL:BC167154 EMBL:AK123404 EMBL:AK127776
IPI:IPI00410656 RefSeq:NP_940983.2 UniGene:Hs.190477
ProteinModelPortal:P61129 SMR:P61129 PhosphoSite:P61129
DMDM:47117369 PaxDb:P61129 PRIDE:P61129 Ensembl:ENST00000343936
Ensembl:ENST00000409871 GeneID:376940 KEGG:hsa:376940
UCSC:uc002thq.1 CTD:376940 GeneCards:GC02P113033 HGNC:HGNC:24762
HPA:HPA036019 neXtProt:NX_P61129 PharmGKB:PA142670510
HOVERGEN:HBG063914 InParanoid:P61129 OMA:IRPQYSD OrthoDB:EOG4CG081
ChiTaRS:ZC3H6 GenomeRNAi:376940 NextBio:100656 ArrayExpress:P61129
Bgee:P61129 CleanEx:HS_ZC3H6 Genevestigator:P61129
GermOnline:ENSG00000188177 Uniprot:P61129
Length = 1189
Score = 110 (43.8 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 35 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLH 82
+CK++L G C KGDQC+F H+ ++ K E C FY + + C ++H
Sbjct: 277 ICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMH 325
>UNIPROTKB|E2RFS8 [details] [associations]
symbol:ZC3H8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070245 "positive regulation of thymocyte
apoptotic process" evidence=IEA] [GO:0046677 "response to
antibiotic" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0043029 "T cell homeostasis"
evidence=IEA] [GO:0033085 "negative regulation of T cell
differentiation in thymus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 GO:GO:0043565
GO:GO:0008270 GO:GO:0046677 GO:GO:0003700 GO:GO:0070245
GO:GO:0043029 GO:GO:0033085 GeneTree:ENSGT00530000063288
EMBL:AAEX03010906 Ensembl:ENSCAFT00000011466 OMA:ECERIPK
NextBio:20857524 Uniprot:E2RFS8
Length = 393
Score = 104 (41.7 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 35 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLH 82
+CK++L C KGDQC+F H+ ++ K E C FY + + C +LH
Sbjct: 299 ICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLH 347
>TAIR|locus:2164660 [details] [associations]
symbol:EMB1789 "embryo defective 1789" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] InterPro:IPR000571
PROSITE:PS50103 SMART:SM00356 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003723 GO:GO:0090305 GO:GO:0004518 EMBL:AB024035
EMBL:BX832581 IPI:IPI00520804 RefSeq:NP_200503.1 UniGene:At.50534
ProteinModelPortal:Q9LTS7 SMR:Q9LTS7 PRIDE:Q9LTS7
EnsemblPlants:AT5G56930.1 GeneID:835795 KEGG:ath:AT5G56930
TAIR:At5g56930 eggNOG:NOG245027 HOGENOM:HOG000107457
InParanoid:Q9LTS7 OMA:RCHEGDK PhylomeDB:Q9LTS7
ProtClustDB:CLSN2916798 Genevestigator:Q9LTS7 Uniprot:Q9LTS7
Length = 675
Score = 107 (42.7 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 36 CKHWLRGLCKKGDQCEFLHE-YDMTKMPECYFYSRFNACHNKECPFLH 82
C+H+L+G C +GD+C+F H+ TK C +++ + +CPF H
Sbjct: 356 CRHYLKGRCHEGDKCKFSHDTIPETKCSPCCYFATQSCMKGDDCPFDH 403
>TAIR|locus:2043413 [details] [associations]
symbol:AT2G47680 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] InterPro:IPR000571 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50103
PROSITE:PS51194 SMART:SM00356 SMART:SM00490 GO:GO:0005524
GO:GO:0009507 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AC005309 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG1643 EMBL:AB493597
IPI:IPI00519204 PIR:C84918 PIR:T00416 RefSeq:NP_182290.1
UniGene:At.36329 ProteinModelPortal:O22243 SMR:O22243 PaxDb:O22243
PRIDE:O22243 EnsemblPlants:AT2G47680.1 GeneID:819381
KEGG:ath:AT2G47680 GeneFarm:1818 TAIR:At2g47680
HOGENOM:HOG000082976 InParanoid:O22243 OMA:AYVIDSC PhylomeDB:O22243
ProtClustDB:CLSN2683720 Genevestigator:O22243 GO:GO:0008026
Uniprot:O22243
Length = 1015
Score = 108 (43.1 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKE-CPFLH 82
P ++ + VC ++L G C +G QC F H T+ P C F++ C N E C F H
Sbjct: 721 PEDYVEYGEAPVCVYFLNGYCNRGGQCTFTHTLQSTR-PACKFFASSQGCRNGESCLFSH 779
>MGI|MGI:1930128 [details] [associations]
symbol:Zc3h8 "zinc finger CCCH type containing 8"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0033085 "negative
regulation of T cell differentiation in thymus" evidence=ISO]
[GO:0043029 "T cell homeostasis" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO;IMP]
[GO:0046677 "response to antibiotic" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0070245 "positive regulation
of thymocyte apoptotic process" evidence=ISO] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 MGI:MGI:1930128
GO:GO:0005634 GO:GO:0006915 GO:GO:0045892 GO:GO:0046872
GO:GO:0043565 GO:GO:0008270 GO:GO:0046677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003723 GO:GO:0070245 GO:GO:0043029
GO:GO:0033085 GeneTree:ENSGT00530000063288 CTD:84524
eggNOG:NOG287629 HOGENOM:HOG000231732 HOVERGEN:HBG057407
OMA:PKKFRHS OrthoDB:EOG454907 EMBL:AF061961 EMBL:BC048687
IPI:IPI00330691 RefSeq:NP_065619.2 UniGene:Mm.11675
ProteinModelPortal:Q9JJ48 SMR:Q9JJ48 PhosphoSite:Q9JJ48
PRIDE:Q9JJ48 Ensembl:ENSMUST00000028866 GeneID:57432 KEGG:mmu:57432
InParanoid:Q9JJ48 NextBio:313802 Bgee:Q9JJ48 CleanEx:MM_ZC3H8
Genevestigator:Q9JJ48 GermOnline:ENSMUSG00000027387 Uniprot:Q9JJ48
Length = 305
Score = 101 (40.6 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 35 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLH 82
VCK++L C KGDQC+F H+ ++ K E C +Y + + C +LH
Sbjct: 210 VCKYFLERKCIKGDQCKFDHDAEIEKKKEMCKYYVQGYCTKGENCLYLH 258
>RGD|1310458 [details] [associations]
symbol:Zc3h8 "zinc finger CCCH type containing 8" species:10116
"Rattus norvegicus" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISO] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0033085 "negative regulation of T cell
differentiation in thymus" evidence=IEA;ISO] [GO:0043029 "T cell
homeostasis" evidence=IEA;ISO] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA;ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0046677 "response
to antibiotic" evidence=IEA;ISO] [GO:0070245 "positive regulation
of thymocyte apoptotic process" evidence=IEA;ISO]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
RGD:1310458 GO:GO:0005634 GO:GO:0043565 GO:GO:0008270 GO:GO:0046677
GO:GO:0003700 GO:GO:0070245 GO:GO:0043029 EMBL:CH473949
GO:GO:0033085 GeneTree:ENSGT00530000063288 CTD:84524
eggNOG:NOG287629 HOGENOM:HOG000231732 HOVERGEN:HBG057407
OrthoDB:EOG454907 EMBL:BC079122 IPI:IPI00464661
RefSeq:NP_001012090.1 UniGene:Rn.137486 SMR:Q6AYB0
Ensembl:ENSRNOT00000023845 GeneID:311414 KEGG:rno:311414
UCSC:RGD:1310458 InParanoid:Q6AYB0 NextBio:663570
Genevestigator:Q6AYB0 Uniprot:Q6AYB0
Length = 305
Score = 101 (40.6 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 35 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLH 82
VCK++L C KGDQC+F H+ ++ K E C +Y + + C +LH
Sbjct: 210 VCKYFLERKCIKGDQCKFDHDAEIEKKKEMCKYYVQGYCTKGENCLYLH 258
>UNIPROTKB|Q6GLD9 [details] [associations]
symbol:mkrn2 "Probable E3 ubiquitin-protein ligase
makorin-2" species:8364 "Xenopus (Silurana) tropicalis" [GO:0006351
"transcription, DNA-dependent" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0009798 "axis specification"
evidence=ISS] [GO:0014065 "phosphatidylinositol 3-kinase cascade"
evidence=ISS] [GO:0043491 "protein kinase B signaling cascade"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0050768
"negative regulation of neurogenesis" evidence=ISS]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50089 PROSITE:PS50103 SMART:SM00184
SMART:SM00356 UniPathway:UPA00143 Pfam:PF00097 Prosite:PS00518
GO:GO:0046872 GO:GO:0016874 GO:GO:0014065 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0003676 GO:GO:0016567
GO:GO:0009790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0043491
eggNOG:COG5084 GO:GO:0009798 GO:GO:0050768 InterPro:IPR017907
InterPro:IPR026290 PANTHER:PTHR11224 HOGENOM:HOG000252976 KO:K15687
HOVERGEN:HBG066965 CTD:23609 OrthoDB:EOG4229K2 InterPro:IPR026293
PANTHER:PTHR11224:SF17 EMBL:BC074559 RefSeq:NP_001005447.1
UniGene:Str.24743 ProteinModelPortal:Q6GLD9 GeneID:448038
KEGG:xtr:448038 Xenbase:XB-GENE-5879487 InParanoid:Q6GLD9
Uniprot:Q6GLD9
Length = 418
Score = 103 (41.3 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHIDP 85
+ V C+++L G+C++G +C F H+ +K C FY R + C + H+ P
Sbjct: 4 KHVTCRYFLHGVCREGGRCLFSHDLATSKPSTVCRFYQRGQCAYGARCRYDHVKP 58
>ZFIN|ZDB-GENE-020213-2 [details] [associations]
symbol:mkrn2 "makorin, ring finger protein, 2"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=ISS] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0016874 "ligase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 UniPathway:UPA00143 Pfam:PF00097
Prosite:PS00518 ZFIN:ZDB-GENE-020213-2 GO:GO:0007399 GO:GO:0030154
GO:GO:0006355 GO:GO:0046872 GO:GO:0016874 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0016567 GO:GO:0005622
Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 GeneTree:ENSGT00390000014093
HOVERGEN:HBG066965 EMBL:AF277172 EMBL:BC065352 IPI:IPI00493411
RefSeq:NP_694511.1 UniGene:Dr.77762 STRING:Q9DFG8
Ensembl:ENSDART00000019997 Ensembl:ENSDART00000130504 GeneID:170783
KEGG:dre:170783 CTD:23609 OrthoDB:EOG4229K2 NextBio:20797101
ArrayExpress:Q9DFG8 Bgee:Q9DFG8 InterPro:IPR026293
PANTHER:PTHR11224:SF17 Uniprot:Q9DFG8
Length = 414
Score = 102 (41.0 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHIDP 85
+ V C+++L G+C++G +C F H+ +K C +Y R + C + HI P
Sbjct: 4 KQVTCRYFLHGVCREGSRCLFSHDLTTSKPSTICKYYQRGACAYGDRCRYDHIKP 58
>UNIPROTKB|E1C259 [details] [associations]
symbol:ZC3H6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00530000063288 OMA:IRPQYSD
EMBL:AADN02044292 IPI:IPI00570793 Ensembl:ENSGALT00000013458
Uniprot:E1C259
Length = 1189
Score = 107 (42.7 bits), Expect = 0.00011, P = 0.00011
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 35 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLH 82
+CK++L G C KG+QC+F H+ ++ K E C FY + + C +LH
Sbjct: 268 ICKYFLEGRCIKGEQCKFDHDAEIEKKKEICKFYIQGYCTKGENCIYLH 316
>RGD|1311197 [details] [associations]
symbol:Mkrn3 "makorin, ring finger protein, 3" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000571 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 RGD:1311197
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
InterPro:IPR026290 PANTHER:PTHR11224 GeneTree:ENSGT00390000014093
OrthoDB:EOG4QRH4M InterPro:IPR026294 PANTHER:PTHR11224:SF16
IPI:IPI00958524 Ensembl:ENSRNOT00000013551 UCSC:RGD:1311197
Uniprot:D3ZY41
Length = 523
Score = 77 (32.2 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 24 PLRHITGD--RSVVCKHWLRGLCKKGDQCEFLHE 55
P R+ TG + ++C+++L G CK+GD C + H+
Sbjct: 80 PERN-TGSWTKQILCRYYLHGQCKEGDNCRYSHD 112
Score = 31 (16.0 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 9 IQDPSFQAPGVLVPFP 24
+Q+ S AP ++ P P
Sbjct: 43 LQEASGLAPFLMAPVP 58
Score = 31 (16.0 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 61 MPECYFYSRFNACHNKECPFLH 82
+P C + +R C + H
Sbjct: 256 LPLCRYAARGQCLRGDRCAYPH 277
>MGI|MGI:1914277 [details] [associations]
symbol:Mkrn2 "makorin, ring finger protein, 2" species:10090
"Mus musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=ISO;ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 UniPathway:UPA00143
MGI:MGI:1914277 Prosite:PS00518 GO:GO:0046872 GO:GO:0016874
GO:GO:0008270 GO:GO:0003676 GO:GO:0016567 GO:GO:0005622
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:CH466523 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 GeneTree:ENSGT00390000014093
HOVERGEN:HBG066965 CTD:23609 OrthoDB:EOG4229K2 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:AF277171 EMBL:AK011295
EMBL:AK077926 EMBL:BC025547 IPI:IPI00620251 RefSeq:NP_075779.2
UniGene:Mm.101316 ProteinModelPortal:Q9ERV1 SMR:Q9ERV1
PhosphoSite:Q9ERV1 PRIDE:Q9ERV1 Ensembl:ENSMUST00000000449
GeneID:67027 KEGG:mmu:67027 InParanoid:Q6GTY9 NextBio:323348
Bgee:Q9ERV1 CleanEx:MM_MKRN2 Genevestigator:Q9ERV1
GermOnline:ENSMUSG00000000439 Uniprot:Q9ERV1
Length = 416
Score = 101 (40.6 bits), Expect = 0.00012, P = 0.00012
Identities = 17/64 (26%), Positives = 33/64 (51%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHIDPDSMIE 90
+ V C++++ G+C++G QC F H+ +K C +Y + + C + H P +
Sbjct: 4 KQVTCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGARCRYDHTKPPAAAG 63
Query: 91 ASVG 94
+VG
Sbjct: 64 GAVG 67
>RGD|1310618 [details] [associations]
symbol:Mkrn2 "makorin, ring finger protein, 2" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 RGD:1310618
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0005622 Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 GeneTree:ENSGT00390000014093
HOVERGEN:HBG066965 CTD:23609 OrthoDB:EOG4229K2 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:BC083870 IPI:IPI00372043
RefSeq:NP_001008315.1 UniGene:Rn.129070 Ensembl:ENSRNOT00000013146
GeneID:297525 KEGG:rno:297525 UCSC:RGD:1310618 InParanoid:Q5XI23
NextBio:642384 Genevestigator:Q5XI23 Uniprot:Q5XI23
Length = 417
Score = 101 (40.6 bits), Expect = 0.00012, P = 0.00012
Identities = 17/64 (26%), Positives = 33/64 (51%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHIDPDSMIE 90
+ V C++++ G+C++G QC F H+ +K C +Y + + C + H P +
Sbjct: 4 KQVTCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGARCRYDHTKPPAAAG 63
Query: 91 ASVG 94
+VG
Sbjct: 64 GAVG 67
>ZFIN|ZDB-GENE-030131-5954 [details] [associations]
symbol:mkrn4 "makorin, ring finger protein, 4"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS50103 SMART:SM00184 SMART:SM00356
Prosite:PS00518 ZFIN:ZDB-GENE-030131-5954 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
eggNOG:NOG268458 GeneTree:ENSGT00390000014093 EMBL:CU302443
IPI:IPI00486140 RefSeq:NP_001121808.1 UniGene:Dr.29995
Ensembl:ENSDART00000104346 GeneID:559882 KEGG:dre:559882 CTD:559882
HOGENOM:HOG000206392 HOVERGEN:HBG104302 OMA:NHSFCLQ
OrthoDB:EOG4WM4W6 NextBio:20883183 Uniprot:A9C4A6
Length = 397
Score = 100 (40.3 bits), Expect = 0.00015, P = 0.00015
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 29 TGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTK--MPECYFYSRFNACHNKECPFLH 82
+GD S VC+ ++ G C+ G C +LHE+ +C ++ + C +LH
Sbjct: 11 SGDNSAVCRQFINGSCRYGQSCYYLHEFPSVPSFQVQCRYFQKGGCWFGDRCRYLH 66
>FB|FBgn0029152 [details] [associations]
symbol:Mkrn1 "Makorin 1" species:7227 "Drosophila
melanogaster" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 eggNOG:NOG268458 ChiTaRS:MKRN1 EMBL:AF192794
EMBL:AF192788 STRING:Q9TVX6 FlyBase:FBgn0029152 InParanoid:Q9TVX6
OrthoDB:EOG4CC2GZ Uniprot:Q9TVX6
Length = 386
Score = 82 (33.9 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 30 GDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPEC 64
G +C++++RG+C+ G+ C F H+ + PEC
Sbjct: 17 GRSQTICRYYVRGICRFGELCRFSHDLSRGR-PEC 50
Score = 37 (18.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 69 RFNACHNKECPFLHIDPDSMIEASVG 94
R+ A +E +DP++++EA G
Sbjct: 96 RYTAHEQREFETT-VDPEAVMEAQAG 120
>UNIPROTKB|Q13064 [details] [associations]
symbol:MKRN3 "Probable E3 ubiquitin-protein ligase
makorin-3" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001841 InterPro:IPR000571 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 UniPathway:UPA00143
Prosite:PS00518 GO:GO:0046872 GO:GO:0016874 GO:GO:0008270
GO:GO:0003676 GO:GO:0016567 GO:GO:0030529 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 eggNOG:NOG268458 HOGENOM:HOG000252976 KO:K15687
HOVERGEN:HBG066965 EMBL:U19107 EMBL:BC044639 IPI:IPI00024229
PIR:G01614 RefSeq:NP_005655.1 UniGene:Hs.679587 UniGene:Hs.72964
ProteinModelPortal:Q13064 SMR:Q13064 IntAct:Q13064 STRING:Q13064
PhosphoSite:Q13064 DMDM:17368438 PaxDb:Q13064 PeptideAtlas:Q13064
PRIDE:Q13064 DNASU:7681 Ensembl:ENST00000314520 GeneID:7681
KEGG:hsa:7681 UCSC:uc001ywh.4 CTD:7681 GeneCards:GC15P023810
HGNC:HGNC:7114 HPA:HPA029494 MIM:603856 neXtProt:NX_Q13064
PharmGKB:PA30833 InParanoid:Q13064 OMA:HGQCKEG OrthoDB:EOG4QRH4M
PhylomeDB:Q13064 ChiTaRS:MKRN3 GenomeRNAi:7681 NextBio:29794
ArrayExpress:Q13064 Bgee:Q13064 CleanEx:HS_MKRN3
Genevestigator:Q13064 GermOnline:ENSG00000179455 InterPro:IPR026294
PANTHER:PTHR11224:SF16 Uniprot:Q13064
Length = 507
Score = 79 (32.9 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 22 PFPLRHITG--DRSVVCKHWLRGLCKKGDQCEFLHEYDMTKM 61
P P R +G + ++C++++ G CK+G+ C + H+ KM
Sbjct: 86 PLPSRS-SGIWTKQIICRYYIHGQCKEGENCRYSHDLSGRKM 126
Score = 43 (20.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 64 CYFYSRFNACHNKECPFLHID 84
CY+ SR + C +LH D
Sbjct: 244 CYYASRGVCFRGESCMYLHGD 264
>UNIPROTKB|B0F0H3 [details] [associations]
symbol:mkrn2 "Probable E3 ubiquitin-protein ligase
makorin-2" species:8355 "Xenopus laevis" [GO:0005622
"intracellular" evidence=IC] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0009790 "embryo development"
evidence=IMP] [GO:0009798 "axis specification" evidence=IMP]
[GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=IMP]
[GO:0043491 "protein kinase B signaling cascade" evidence=IMP]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0050768 "negative
regulation of neurogenesis" evidence=IMP] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Prosite:PS00518
GO:GO:0046872 GO:GO:0016874 GO:GO:0014065 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0003676 GO:GO:0005622
GO:GO:0009790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0043491
GO:GO:0009798 GO:GO:0050768 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 KO:K15687 HOVERGEN:HBG066965 InterPro:IPR026293
PANTHER:PTHR11224:SF17 EMBL:EF626804 RefSeq:NP_001116070.1
UniGene:Xl.76333 GeneID:100141485 KEGG:xla:100141485 Uniprot:B0F0H3
Length = 409
Score = 99 (39.9 bits), Expect = 0.00020, P = 0.00020
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHIDP 85
+ V C+++L G+C++G +C F H+ +K C F+ R + C + H+ P
Sbjct: 4 KQVTCRYFLHGVCREGSRCLFSHDLATSKPSTVCRFFLRGQCAYGTRCRYDHVKP 58
>TAIR|locus:2155904 [details] [associations]
symbol:AT5G49200 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR017986 InterPro:IPR000571 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 Pfam:PF00642 PROSITE:PS50082
PROSITE:PS50103 PROSITE:PS50294 SMART:SM00320 SMART:SM00356
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 eggNOG:COG2319 InterPro:IPR020472
PRINTS:PR00320 EMBL:AB016872 HOGENOM:HOG000239729
ProtClustDB:CLSN2686199 EMBL:AJ252066 IPI:IPI00517790
RefSeq:NP_199731.1 UniGene:At.64278 ProteinModelPortal:Q9FE91
SMR:Q9FE91 STRING:Q9FE91 PRIDE:Q9FE91 EnsemblPlants:AT5G49200.1
GeneID:834979 KEGG:ath:AT5G49200 GeneFarm:3799 TAIR:At5g49200
InParanoid:Q9FE91 PhylomeDB:Q9FE91 Genevestigator:Q9FE91
Uniprot:Q9FE91
Length = 419
Score = 99 (39.9 bits), Expect = 0.00020, P = 0.00020
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 24 PLRHITGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
P+R + R VCK+W G CK+G+QC+FLH + P + HNKE + +
Sbjct: 84 PMRS-SSLRKWVCKYWKDGKCKRGEQCQFLHSWSC--FPGLAMVASLEG-HNKELKGIAL 139
Query: 84 DP--DSMIEASVGMVHRV 99
D + S+ RV
Sbjct: 140 PEGSDKLFSVSIDGTLRV 157
>UNIPROTKB|Q9PTI4 [details] [associations]
symbol:MKRN1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:3.30.40.10
InterPro:IPR013083 eggNOG:COG5084 InterPro:IPR017907
InterPro:IPR026290 PANTHER:PTHR11224 HOGENOM:HOG000252976 KO:K15687
CTD:23608 GeneTree:ENSGT00390000014093 HOVERGEN:HBG066965
OMA:YQRGCCA OrthoDB:EOG45DWPM EMBL:AADN02006362 EMBL:AADN02006363
EMBL:AF192787 IPI:IPI00595405 RefSeq:NP_990073.1 UniGene:Gga.1197
Ensembl:ENSGALT00000020962 GeneID:395500 KEGG:gga:395500
InParanoid:Q9PTI4 NextBio:20815579 Uniprot:Q9PTI4
Length = 464
Score = 99 (39.9 bits), Expect = 0.00024, P = 0.00024
Identities = 19/71 (26%), Positives = 33/71 (46%)
Query: 17 PGVLVPFPLRHITG-DRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACH 74
P + P L G + V C++++ G+CK+GD C + H+ + C +Y R +
Sbjct: 34 PAAVPPLALGPGGGWTKQVTCRYFMHGVCKEGDNCRYSHDLSTGQSAMVCRYYQRGCCAY 93
Query: 75 NKECPFLHIDP 85
C + H P
Sbjct: 94 GDHCRYEHTKP 104
>MGI|MGI:2444912 [details] [associations]
symbol:Mbnl3 "muscleblind-like 3 (Drosophila)" species:10090
"Mus musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=ISO] [GO:0045662 "negative regulation of myoblast
differentiation" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356
MGI:MGI:2444912 GO:GO:0007275 GO:GO:0005634 GO:GO:0005794
GO:GO:0008380 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003676 GO:GO:0043484 GO:GO:0045662 eggNOG:NOG241142
GeneTree:ENSGT00390000001586 KO:K14943 HOVERGEN:HBG006999
HOGENOM:HOG000230928 CTD:55796 EMBL:AF466292 EMBL:AB077700
EMBL:AJ427920 EMBL:BC057157 IPI:IPI00263944 RefSeq:NP_598924.1
UniGene:Mm.295324 ProteinModelPortal:Q8R003 SMR:Q8R003
STRING:Q8R003 PhosphoSite:Q8R003 PaxDb:Q8R003 PRIDE:Q8R003
Ensembl:ENSMUST00000114876 GeneID:171170 KEGG:mmu:171170
InParanoid:Q8R003 OrthoDB:EOG408N8F ChiTaRS:MBNL3 NextBio:370576
Bgee:Q8R003 CleanEx:MM_MBNL3 Genevestigator:Q8R003 Uniprot:Q8R003
Length = 342
Score = 97 (39.2 bits), Expect = 0.00024, P = 0.00024
Identities = 27/95 (28%), Positives = 45/95 (47%)
Query: 11 DPSFQAPGVLVPFPLRHITGDRSVVCKHWLRGLCKKGD-QCEFLHEYD--MTKMPE---- 63
+P PGV P P+R DR VC+ + RG C +G+ +C + H D M ++ +
Sbjct: 158 NPPLALPGVPGPKPIRT---DRLEVCREFQRGNCTRGESECRYAHPTDVSMIEVTDNSVT 214
Query: 64 -CYFYSRFNACHNKECPFLHIDPDSMIEASVGMVH 97
C Y + C ++C + H P ++A + H
Sbjct: 215 ICMDYIK-GRCSREKCKYFH--PPPHLQAKLRAAH 246
>UNIPROTKB|F1LTU5 [details] [associations]
symbol:Zc3h6 "Protein Zc3h6" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00530000063288 OMA:IRPQYSD
IPI:IPI00870619 Ensembl:ENSRNOT00000024322 RGD:1311061
ArrayExpress:F1LTU5 Uniprot:F1LTU5
Length = 1171
Score = 103 (41.3 bits), Expect = 0.00028, P = 0.00028
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 35 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLH 82
+CK++L G C KGD C+F H+ ++ K E C +Y + + C ++H
Sbjct: 264 ICKYFLEGRCIKGDHCKFNHDAELEKKKEVCKYYLQGYCTKGENCIYMH 312
>UNIPROTKB|Q9UHC7 [details] [associations]
symbol:MKRN1 "E3 ubiquitin-protein ligase makorin-1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 UniPathway:UPA00143
Prosite:PS00518 Reactome:REACT_6900 GO:GO:0046872 GO:GO:0016874
GO:GO:0008270 GO:GO:0003682 GO:GO:0003676 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:CH236950 EMBL:CH471070
eggNOG:COG5084 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 KO:K15687 EMBL:AC069335 CTD:23608
HOVERGEN:HBG066965 OMA:YQRGCCA OrthoDB:EOG45DWPM EMBL:AF192784
EMBL:AF192793 EMBL:AF192789 EMBL:AF192790 EMBL:AF192791
EMBL:AF192792 EMBL:AM236048 EMBL:AF117233 EMBL:AL136812
EMBL:AK127030 EMBL:AK315552 EMBL:BC025955 EMBL:BC037400
EMBL:BC064838 EMBL:AB209298 IPI:IPI00033350 IPI:IPI00921845
IPI:IPI00946774 IPI:IPI00973591 RefSeq:NP_001138597.1
RefSeq:NP_038474.2 UniGene:Hs.741212 ProteinModelPortal:Q9UHC7
SMR:Q9UHC7 IntAct:Q9UHC7 MINT:MINT-1365598 STRING:Q9UHC7
PhosphoSite:Q9UHC7 DMDM:67477468 PRIDE:Q9UHC7 DNASU:23608
Ensembl:ENST00000255977 Ensembl:ENST00000443720
Ensembl:ENST00000474576 GeneID:23608 KEGG:hsa:23608 UCSC:uc003vvs.2
GeneCards:GC07M140152 HGNC:HGNC:7112 HPA:HPA000567 MIM:607754
neXtProt:NX_Q9UHC7 PharmGKB:PA30831 InParanoid:Q9UHC7
PhylomeDB:Q9UHC7 GenomeRNAi:23608 NextBio:46308 ArrayExpress:Q9UHC7
Bgee:Q9UHC7 CleanEx:HS_MKRN1 Genevestigator:Q9UHC7
GermOnline:ENSG00000133606 Uniprot:Q9UHC7
Length = 482
Score = 98 (39.6 bits), Expect = 0.00032, P = 0.00032
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEY-DMTKMPECYFYSRFNACHNKECPFLHIDPDSMIE 90
+ V C++++ G+CK+GD C + H+ D C ++ R + C + H P E
Sbjct: 57 KQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEE 116
Query: 91 AS 92
A+
Sbjct: 117 AT 118
>UNIPROTKB|F1NI93 [details] [associations]
symbol:MKRN2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR001841 InterPro:IPR000571
Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GO:GO:0005622 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 GeneTree:ENSGT00390000014093 InterPro:IPR026293
PANTHER:PTHR11224:SF17 OMA:KGYCAYG EMBL:AADN02013930
IPI:IPI00584461 Ensembl:ENSGALT00000007996 Uniprot:F1NI93
Length = 417
Score = 96 (38.9 bits), Expect = 0.00042, P = 0.00042
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHI 83
+ V C+++++G+C++G +C F H+ +K C +Y + + C + HI
Sbjct: 4 KQVTCRYYVQGVCREGSKCLFSHDLSSSKSSTVCKYYQKGQCAYGARCRYDHI 56
>ZFIN|ZDB-GENE-020213-1 [details] [associations]
symbol:mkrn1 "makorin, ring finger protein, 1"
species:7955 "Danio rerio" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000571
PROSITE:PS50089 PROSITE:PS50103 SMART:SM00184 SMART:SM00356
UniPathway:UPA00143 Prosite:PS00518 ZFIN:ZDB-GENE-020213-1
GO:GO:0046872 GO:GO:0016874 GO:GO:0008270 GO:GO:0003676
GO:GO:0016567 Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 HSSP:P47974 InterPro:IPR026290 PANTHER:PTHR11224
HOGENOM:HOG000252976 KO:K15687 EMBL:CR792454 EMBL:CT826375
EMBL:BC095243 EMBL:AF277173 IPI:IPI00639757 RefSeq:NP_694510.1
UniGene:Dr.78561 ProteinModelPortal:Q4VBT5 STRING:Q4VBT5
Ensembl:ENSDART00000061070 GeneID:170782 KEGG:dre:170782 CTD:23608
GeneTree:ENSGT00390000014093 HOVERGEN:HBG066965 InParanoid:Q4VBT5
OMA:YQRGCCA OrthoDB:EOG45DWPM NextBio:20797100 Bgee:Q4VBT5
Uniprot:Q4VBT5
Length = 439
Score = 96 (38.9 bits), Expect = 0.00046, P = 0.00046
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSRFNACHNKECPFLHIDPDSMIE 90
+ V C++++ GLCK+G+ C + H+ K C F+ + C + H P E
Sbjct: 20 KHVTCRYFMHGLCKEGENCRYSHDLSSCKQTMICKFFQKGCCAFGDRCRYEHTKPSKQDE 79
>TAIR|locus:2831040 [details] [associations]
symbol:AT3G08505 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50089 PROSITE:PS50103
SMART:SM00184 SMART:SM00356 UniPathway:UPA00143 Pfam:PF00097
Prosite:PS00518 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0016874 GO:GO:0008270
GO:GO:0016567 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
EMBL:AC074395 EMBL:AY070366 EMBL:BT000988 IPI:IPI00544837
RefSeq:NP_850540.1 RefSeq:NP_974255.1 UniGene:At.28383
ProteinModelPortal:Q6IDS6 SMR:Q6IDS6 PaxDb:Q6IDS6 PRIDE:Q6IDS6
EnsemblPlants:AT3G08505.1 EnsemblPlants:AT3G08505.2 GeneID:819998
KEGG:ath:AT3G08505 TAIR:At3g08505 eggNOG:NOG268458
HOGENOM:HOG000252976 InParanoid:Q6IDS6 KO:K15687 OMA:FEEGANS
PhylomeDB:Q6IDS6 ProtClustDB:CLSN2690786 Genevestigator:Q6IDS6
Uniprot:Q6IDS6
Length = 323
Score = 94 (38.1 bits), Expect = 0.00047, P = 0.00047
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 31 DRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHIDPDSMIE 90
DR ++CK ++ G C KG+ CEF H+ C FY + + C + H+ S +
Sbjct: 3 DR-ILCKFFVHGSCLKGENCEFSHDSKDPPNNVCTFYQKRICLYGSRCRYDHVRAASNLP 61
Query: 91 AS 92
S
Sbjct: 62 LS 63
>ASPGD|ASPL0000046029 [details] [associations]
symbol:AN1537 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:BN001307 GO:GO:0008270 GO:GO:0003676
EnsemblFungi:CADANIAT00008164 HOGENOM:HOG000158348 OMA:KVAICKD
Uniprot:C8VMX4
Length = 467
Score = 96 (38.9 bits), Expect = 0.00050, P = 0.00050
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 31 DRSVVCKHWLR-GLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHI 83
++ +CK +L+ G C G+ C+ HE + P C + R C N EC + H+
Sbjct: 297 NKVAICKDFLQTGKCSAGNSCDLSHEPSPHRSPACVHFLR-GRCSNPECRYAHV 349
>UNIPROTKB|E1B8I9 [details] [associations]
symbol:MBNL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045662 "negative regulation of myoblast
differentiation" evidence=IEA] [GO:0043484 "regulation of RNA
splicing" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000571 PROSITE:PS50103
SMART:SM00356 GO:GO:0005794 GO:GO:0008270 GO:GO:0003676
GO:GO:0043484 GO:GO:0045662 GeneTree:ENSGT00390000001586 KO:K14943
CTD:55796 EMBL:DAAA02067534 EMBL:DAAA02067535 IPI:IPI00686373
RefSeq:NP_001179669.1 UniGene:Bt.105433 Ensembl:ENSBTAT00000018746
GeneID:540550 KEGG:bta:540550 OMA:RENCKYF NextBio:20878697
Uniprot:E1B8I9
Length = 339
Score = 94 (38.1 bits), Expect = 0.00051, P = 0.00051
Identities = 24/95 (25%), Positives = 44/95 (46%)
Query: 11 DPSFQAPGVLVPFPLRHITGDRSVVCKHWLRGLCKKGDQ-CEFLHEYDMTKMPE------ 63
+P PG + P P+R D+ VC+ + RG C +G+ C + H D++ +
Sbjct: 159 NPPLPLPGPVGPKPIR---SDKLEVCREFQRGNCTRGENDCRYAHPTDVSMIETSDNTVT 215
Query: 64 -CYFYSRFNACHNKECPFLHIDPDSMIEASVGMVH 97
C Y + C ++C + H P + ++A + H
Sbjct: 216 ICMDYIK-GRCSREKCKYFH--PPAHLQAKLKAAH 247
>UNIPROTKB|C9J7K5 [details] [associations]
symbol:MKRN1 "E3 ubiquitin-protein ligase makorin-1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 InterPro:IPR026290 PANTHER:PTHR11224
EMBL:AC069335 HGNC:HGNC:7112 IPI:IPI00946335
ProteinModelPortal:C9J7K5 SMR:C9J7K5 STRING:C9J7K5
Ensembl:ENST00000481705 ArrayExpress:C9J7K5 Bgee:C9J7K5
Uniprot:C9J7K5
Length = 148
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEY-DMTKMPECYFYSRFNACHNKEC 78
+ V C++++ G+CK+GD C + H+ D C ++ R + C
Sbjct: 57 KQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRC 104
>ASPGD|ASPL0000040300 [details] [associations]
symbol:AN3447 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
EMBL:BN001306 GO:GO:0003676 eggNOG:COG5084 EMBL:AACD01000058
InterPro:IPR026290 PANTHER:PTHR11224 OrthoDB:EOG49S9H4
RefSeq:XP_661051.1 ProteinModelPortal:Q5B7N3
EnsemblFungi:CADANIAT00009587 GeneID:2873901 KEGG:ani:AN3447.2
HOGENOM:HOG000193473 OMA:FTKGNCK Uniprot:Q5B7N3
Length = 549
Score = 95 (38.5 bits), Expect = 0.00080, P = 0.00080
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMT-KMPECYFYSRFNACHNKECPFLHIDPD 86
+ V CK + +G C+ G C FLH D + C ++++ N +C HI PD
Sbjct: 69 KHVPCKFFRQGACQAGPACPFLHSTDAAIEYAPCKYFTKGNCKFGAKCALAHILPD 124
>UNIPROTKB|C9JCX1 [details] [associations]
symbol:MBNL1 "Muscleblind-like protein 1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:0007519 "skeletal muscle tissue
development" evidence=IEA] InterPro:IPR000571 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 GO:GO:0005737 GO:GO:0008270
GO:GO:0003676 GO:GO:0007519 GO:GO:0006376 GO:GO:0000381
EMBL:AC026347 EMBL:AC106722 HGNC:HGNC:6923 HOGENOM:HOG000230928
ChiTaRS:MBNL1 IPI:IPI00946942 ProteinModelPortal:C9JCX1 SMR:C9JCX1
STRING:C9JCX1 Ensembl:ENST00000460591 ArrayExpress:C9JCX1
Bgee:C9JCX1 Uniprot:C9JCX1
Length = 155
Score = 85 (35.0 bits), Expect = 0.00085, P = 0.00085
Identities = 22/91 (24%), Positives = 38/91 (41%)
Query: 11 DPSFQAPGVLVPFPLRHITGDRSVVCKHWLRGLCKKGDQ-CEFLHEYDMTKMPE------ 63
+P P + + DR VC+ + RG C +G+ C F H D T +
Sbjct: 68 NPGVPVPAAAAAAAQKLMRTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVT 127
Query: 64 -CYFYSRFNACHNKECPFLHIDPDSMIEASV 93
C Y + C ++C + H P + ++A +
Sbjct: 128 VCMDYIK-GRCSREKCKYFH--PPAHLQAKI 155
>MGI|MGI:1859353 [details] [associations]
symbol:Mkrn1 "makorin, ring finger protein, 1" species:10090
"Mus musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 UniPathway:UPA00143
MGI:MGI:1859353 Prosite:PS00518 GO:GO:0046872 GO:GO:0016874
GO:GO:0008270 GO:GO:0003682 GO:GO:0003676 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR013083 eggNOG:COG5084
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224
GeneTree:ENSGT00390000014093 HOVERGEN:HBG066965 OrthoDB:EOG45DWPM
EMBL:AF192785 IPI:IPI00459256 IPI:IPI00850315 UniGene:Mm.270484
ProteinModelPortal:Q9QXP6 SMR:Q9QXP6 STRING:Q9QXP6
PhosphoSite:Q9QXP6 PaxDb:Q9QXP6 PRIDE:Q9QXP6
Ensembl:ENSMUST00000114822 InParanoid:Q9QXP6 ChiTaRS:MKRN1
Bgee:Q9QXP6 CleanEx:MM_MKRN1 Genevestigator:Q9QXP6
GermOnline:ENSMUSG00000029922 Uniprot:Q9QXP6
Length = 481
Score = 94 (38.1 bits), Expect = 0.00085, P = 0.00085
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE---CYFYSRFNACHNKECPFLHIDP 85
+ V C++++ G+CK+GD C + H D++ P C ++ R + C + H P
Sbjct: 57 KQVTCRYFMHGVCKEGDNCRYSH--DLSDSPYGVVCKYFQRGYCVYGDRCRYEHSKP 111
>UNIPROTKB|G3V789 [details] [associations]
symbol:Mkrn1 "Protein Mkrn1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:CH473959 InterPro:IPR017907
InterPro:IPR026290 PANTHER:PTHR11224 GeneTree:ENSGT00390000014093
OMA:YQRGCCA ProteinModelPortal:G3V789 Ensembl:ENSRNOT00000013124
Uniprot:G3V789
Length = 481
Score = 94 (38.1 bits), Expect = 0.00085, P = 0.00085
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE---CYFYSRFNACHNKECPFLHIDP 85
+ V C++++ G+CK+GD C + H D++ P C ++ R + C + H P
Sbjct: 57 KQVTCRYFMHGVCKEGDNCRYSH--DLSDSPYGVVCKYFQRGYCVYGDRCRYEHSKP 111
>UNIPROTKB|F1SRP7 [details] [associations]
symbol:MKRN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000571 Pfam:PF00642
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS50103 SMART:SM00184
SMART:SM00356 Prosite:PS00518 GO:GO:0046872 GO:GO:0008270
GO:GO:0003682 GO:GO:0003676 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 InterPro:IPR026290 PANTHER:PTHR11224 KO:K15687
CTD:23608 GeneTree:ENSGT00390000014093 OMA:YQRGCCA EMBL:CU655865
RefSeq:XP_003134656.1 UniGene:Ssc.10393 Ensembl:ENSSSCT00000017962
GeneID:100514261 KEGG:ssc:100514261 Uniprot:F1SRP7
Length = 482
Score = 94 (38.1 bits), Expect = 0.00086, P = 0.00086
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 32 RSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPE---CYFYSRFNACHNKECPFLHIDP 85
+ V C++++ G+CK+GD C + H D++ P C ++ R + C + H P
Sbjct: 57 KQVTCRYFMHGVCKEGDNCRYSH--DLSDSPYGVVCKYFQRGYCIYGDRCRYEHSKP 111
>DICTYBASE|DDB_G0279181 [details] [associations]
symbol:DDB_G0279181 species:44689 "Dictyostelium
discoideum" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
PROSITE:PS50103 SMART:SM00356 dictyBase:DDB_G0279181 GO:GO:0008270
GO:GO:0003676 eggNOG:COG5084 EMBL:AAFI02000029 RefSeq:XP_641831.1
ProteinModelPortal:Q54X64 EnsemblProtists:DDB0218155 GeneID:8621908
KEGG:ddi:DDB_G0279181 InParanoid:Q54X64 OMA:PIFNKLP Uniprot:Q54X64
Length = 611
Score = 95 (38.5 bits), Expect = 0.00091, P = 0.00091
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 35 VCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHID 84
+C ++ G C D C+ H D+ MP C+ + C N CP+LH++
Sbjct: 391 ICPKFIAGNCDDPD-CKLQHSLDLDLMPICHLFLN-RMCTNDNCPYLHVN 438
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.328 0.143 0.495 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 103 103 0.00091 102 3 11 22 0.50 29
29 0.49 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 88
No. of states in DFA: 593 (63 KB)
Total size of DFA: 145 KB (2088 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.82u 0.06s 11.88t Elapsed: 00:00:10
Total cpu time: 11.83u 0.06s 11.89t Elapsed: 00:00:11
Start: Thu Aug 15 11:43:37 2013 End: Thu Aug 15 11:43:48 2013