RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4296
(103 letters)
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing
protein C19orf7 (KIAA1064) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 29
Score = 27.1 bits (60), Expect = 0.056
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 35 VCKHWLRGLCKKGDQCEFLH 54
+CK ++ G C + + C ++H
Sbjct: 8 LCKFYITGFCARAENCPYMH 27
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 27.0 bits (60), Expect = 0.077
Identities = 8/24 (33%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 32 RSVVCKHWLR-GLCKKGDQCEFLH 54
++ +C+ + G CK G++C+F H
Sbjct: 5 KTELCRPFEESGTCKYGEKCQFAH 28
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 40
Score = 27.0 bits (60), Expect = 0.10
Identities = 7/24 (29%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 32 RSVVCKHWLR-GLCKKGDQCEFLH 54
++ +C+ + G C+ G +C+F H
Sbjct: 8 KTELCRTYSESGRCRYGAKCQFAH 31
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 34
Score = 25.4 bits (56), Expect = 0.34
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 32 RSVVCKHWLR-GLCKKGDQCEFLHEYD 57
++ +C+ + G C G +C F+H D
Sbjct: 7 KTELCRTFHTIGFCPYGPRCHFIHNAD 33
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing
protein C19orf7 (KIAA1064) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 23.3 bits (50), Expect = 2.8
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 36 CKHWLRGL-CKKGDQCEFLHE 55
CK + C GD C F H+
Sbjct: 3 CKLYHTTGNCINGDDCMFSHD 23
>d1f60a1 b.43.3.1 (A:241-334) Elongation factor eEF-1alpha, domain
2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 94
Score = 23.7 bits (51), Expect = 3.4
Identities = 10/39 (25%), Positives = 12/39 (30%), Gaps = 7/39 (17%)
Query: 24 PLRH-------ITGDRSVVCKHWLRGLCKKGDQCEFLHE 55
PLR I G +V G+ K G F
Sbjct: 3 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPA 41
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid
leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 132
Score = 23.1 bits (50), Expect = 6.1
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 18/61 (29%)
Query: 36 CKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACH-----NKECPFLHIDPDSMIE 90
CK L K + + E+ + P L P S+++
Sbjct: 81 CKEGLDIYKKFLTRMTRISEF-------------LKVAEQVGIDRGDIPDLSQAPSSLLD 127
Query: 91 A 91
A
Sbjct: 128 A 128
>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 212
Score = 23.3 bits (50), Expect = 6.6
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 62 PECYFYSRFNACHNKEC---PFLHIDPDSMIEASVG 94
PECY++ N + + C P+ +P M+ ++G
Sbjct: 2 PECYYFE--NPTNPELCQKKPYCLDNPYPMLLVNMG 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.143 0.495
Gapped
Lambda K H
0.267 0.0460 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 434,697
Number of extensions: 18641
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 16
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.5 bits)