BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4297
(69 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|332028091|gb|EGI68142.1| Cleavage and polyadenylation specificity factor subunit 4
[Acromyrmex echinatior]
Length = 290
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
MEC+VANVE+++FDIE+AL+ Q+ LP PF GMDKS+ AVC+FY +G CNK CP R
Sbjct: 1 MECIVANVEHMRFDIEVALDEQYGALPLPFTGMDKSIAAVCQFYPKGSCNKGASCPFR 58
>gi|307183125|gb|EFN70042.1| Cleavage and polyadenylation specificity factor subunit 4
[Camponotus floridanus]
Length = 287
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 46/58 (79%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
MEC+VANVE+++FDIEIAL+ Q+ LP PF GMDKS+ AVC+FY RG C+K CP R
Sbjct: 1 MECVVANVEHMRFDIEIALDEQYGALPLPFTGMDKSIAAVCQFYPRGTCSKGASCPFR 58
>gi|340719465|ref|XP_003398174.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like [Bombus terrestris]
gi|350410464|ref|XP_003489048.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like [Bombus impatiens]
Length = 286
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 44/58 (75%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
MECLVANV+N++FDIEIAL+ Q+ LP PF GMDKS AVC+FY RG C K CP R
Sbjct: 1 MECLVANVDNMRFDIEIALDEQYGALPLPFTGMDKSTAAVCQFYPRGTCVKGASCPFR 58
>gi|66517749|ref|XP_396082.2| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 [Apis mellifera]
gi|380029307|ref|XP_003698318.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like [Apis florea]
Length = 286
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 44/58 (75%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
MECLVANV+N++FDIEIAL+ Q+ LP PF GMDKS AVC+FY RG C K CP R
Sbjct: 1 MECLVANVDNMRFDIEIALDEQYGALPLPFTGMDKSTAAVCQFYPRGTCVKGASCPFR 58
>gi|345488132|ref|XP_001604679.2| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like [Nasonia vitripennis]
Length = 297
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 45/58 (77%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
MEC+VANV+N++FDIEIAL+ Q+ LP PF GMDKS+ AVC+FY +G C K CP R
Sbjct: 1 MECIVANVDNMRFDIEIALDEQYGALPLPFTGMDKSVAAVCQFYPKGTCTKGAACPFR 58
>gi|383862768|ref|XP_003706855.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like [Megachile rotundata]
Length = 286
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 44/58 (75%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
MEC+VANV+N++FDIEIAL+ Q+ LP PF GMDKS AVC+FY RG C K CP R
Sbjct: 1 MECIVANVDNMRFDIEIALDEQYGALPLPFTGMDKSTAAVCQFYPRGTCVKGASCPFR 58
>gi|307200583|gb|EFN80724.1| Cleavage and polyadenylation specificity factor subunit 4
[Harpegnathos saltator]
Length = 285
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 44/58 (75%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
MEC+VANV+N++FDIE AL+ Q+ LP PF GMDKS+ AVC+FY RG C K CP R
Sbjct: 1 MECIVANVDNMQFDIETALDEQYGALPLPFTGMDKSIAAVCQFYPRGTCVKGASCPFR 58
>gi|239792848|dbj|BAH72717.1| ACYPI007246 [Acyrthosiphon pisum]
Length = 148
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 44/58 (75%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME LVA ++IKF++EIAL+ QH LP PF GMDKS+ AVC FY +G C+K +CP+R
Sbjct: 1 MELLVAGFDDIKFNVEIALDEQHGALPLPFNGMDKSIAAVCSFYPKGSCSKGALCPMR 58
>gi|270002662|gb|EEZ99109.1| hypothetical protein TcasGA2_TC005002 [Tribolium castaneum]
Length = 258
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGE-CNKDTMCPLR 58
MEC+VANV++IKFDIE+AL+ Q LP PFPGMDKS+ AVC+FY + C K CP R
Sbjct: 1 MECIVANVDHIKFDIEVALDEQFGALPLPFPGMDKSIAAVCQFYTSIQGCQKGPQCPFR 59
>gi|193624968|ref|XP_001945316.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like [Acyrthosiphon pisum]
Length = 280
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 44/58 (75%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME LVA ++IKF++EIAL+ QH LP PF GMDKS+ AVC FY +G C+K +CP+R
Sbjct: 1 MELLVAGFDDIKFNVEIALDEQHGALPLPFNGMDKSIAAVCSFYPKGSCSKGALCPMR 58
>gi|237681208|ref|NP_001153741.1| cleavage and polyadenylation specific factor 4, 30kDa [Tribolium
castaneum]
gi|270004678|gb|EFA01126.1| hypothetical protein TcasGA2_TC010339 [Tribolium castaneum]
Length = 280
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGE-CNKDTMCPLR 58
MEC+VANV++IKFDIE+AL+ Q LP PFPGMDKS+ AVC+FY + C K CP R
Sbjct: 1 MECIVANVDHIKFDIEVALDEQFGALPLPFPGMDKSIAAVCQFYTSIQGCQKGPQCPFR 59
>gi|348511281|ref|XP_003443173.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like [Oreochromis niloticus]
Length = 265
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 44/58 (75%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+ANV++IKFD+EIA+E Q P PFPGMDKS +AVCEF++R C K MCP R
Sbjct: 1 MQDLLANVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGSAVCEFFMRAACQKGGMCPFR 58
>gi|432870755|ref|XP_004071832.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 1 [Oryzias latipes]
Length = 265
Score = 77.0 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+ANV++IKFD+EIA+E Q P PFPGMDKS +AVCEF+++G C K MCP R
Sbjct: 1 MQELLANVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGSAVCEFFMKGTCMKGGMCPFR 58
>gi|242021708|ref|XP_002431285.1| Cleavage and polyadenylation specificity factor 30 kDa subunit,
putative [Pediculus humanus corporis]
gi|212516553|gb|EEB18547.1| Cleavage and polyadenylation specificity factor 30 kDa subunit,
putative [Pediculus humanus corporis]
Length = 233
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 42/58 (72%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME +VA+V+ +KFDIE ALE Q+ LP PF GMDKS+ AVC FY +G CNK CP R
Sbjct: 1 MELIVASVDGVKFDIETALEEQYGALPLPFSGMDKSIAAVCTFYPKGTCNKGAACPFR 58
>gi|432870757|ref|XP_004071833.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 2 [Oryzias latipes]
Length = 240
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+ANV++IKFD+EIA+E Q P PFPGMDKS +AVCEF+++G C K MCP R
Sbjct: 1 MQELLANVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGSAVCEFFMKGTCMKGGMCPFR 58
>gi|221105106|ref|XP_002156784.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like [Hydra magnipapillata]
Length = 344
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 44/58 (75%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME ++AN+++I+FDIEIALE Q I P PFPGMDKS A+C+F++ C + +CPLR
Sbjct: 1 MENIIANIDDIRFDIEIALEEQLGIQPLPFPGMDKSGAAICDFFISNRCTRGQLCPLR 58
>gi|332373586|gb|AEE61934.1| unknown [Dendroctonus ponderosae]
Length = 294
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/59 (64%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFY-VRGECNKDTMCPLR 58
ME L+ANVE+ KFDIEIALE Q+ LP PFPGMDKS TAVC+FY + C K CP R
Sbjct: 1 MEFLIANVEHFKFDIEIALEEQYGALPLPFPGMDKSTTAVCQFYGTQQGCVKGINCPFR 59
>gi|410931245|ref|XP_003979006.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 1 [Takifugu rubripes]
Length = 263
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 44/58 (75%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++ANV++IKFD+EIA++ Q P PFPGMDKS +AVCEF++R C K MCP R
Sbjct: 1 MQDILANVDHIKFDLEIAVQQQLGAQPLPFPGMDKSGSAVCEFFMRAACMKGAMCPFR 58
>gi|47211970|emb|CAF95292.1| unnamed protein product [Tetraodon nigroviridis]
Length = 291
Score = 74.3 bits (181), Expect = 8e-12, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 44/58 (75%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++ANV++IKFD+EIA++ Q P PFPGMDKS +AVCEF++R C K MCP R
Sbjct: 1 MQDILANVDHIKFDLEIAVQQQLGAQPLPFPGMDKSGSAVCEFFMRAACMKGAMCPFR 58
>gi|327288274|ref|XP_003228853.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 2 [Anolis carolinensis]
Length = 278
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+ANVE+IKF++EIA+E Q P PFPGMDKS AVC+F+++ C K MCP R
Sbjct: 1 MQELIANVEHIKFELEIAVEQQLGAQPLPFPGMDKSGAAVCDFFLKAACGKGGMCPFR 58
>gi|410931247|ref|XP_003979007.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 2 [Takifugu rubripes]
Length = 248
Score = 74.3 bits (181), Expect = 9e-12, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 44/58 (75%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++ANV++IKFD+EIA++ Q P PFPGMDKS +AVCEF++R C K MCP R
Sbjct: 1 MQDILANVDHIKFDLEIAVQQQLGAQPLPFPGMDKSGSAVCEFFMRAACMKGAMCPFR 58
>gi|395514832|ref|XP_003761616.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 isoform 3 [Sarcophilus harrisii]
Length = 211
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQELIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|417398298|gb|JAA46182.1| Putative polyadenylation factor i complex subunit yth1 cpsf
subunit [Desmodus rotundus]
Length = 279
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|327288272|ref|XP_003228852.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 1 [Anolis carolinensis]
Length = 269
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+ANVE+IKF++EIA+E Q P PFPGMDKS AVC+F+++ C K MCP R
Sbjct: 1 MQELIANVEHIKFELEIAVEQQLGAQPLPFPGMDKSGAAVCDFFLKAACGKGGMCPFR 58
>gi|410931249|ref|XP_003979008.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 3 [Takifugu rubripes]
Length = 249
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 44/58 (75%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++ANV++IKFD+EIA++ Q P PFPGMDKS +AVCEF++R C K MCP R
Sbjct: 1 MQDILANVDHIKFDLEIAVQQQLGAQPLPFPGMDKSGSAVCEFFMRAACMKGAMCPFR 58
>gi|410931251|ref|XP_003979009.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 4 [Takifugu rubripes]
Length = 237
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 44/58 (75%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++ANV++IKFD+EIA++ Q P PFPGMDKS +AVCEF++R C K MCP R
Sbjct: 1 MQDILANVDHIKFDLEIAVQQQLGAQPLPFPGMDKSGSAVCEFFMRAACMKGAMCPFR 58
>gi|241711939|ref|XP_002412070.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
gi|215505142|gb|EEC14636.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
Length = 281
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/58 (60%), Positives = 42/58 (72%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME +VA V N+ F++EIALE Q LP PFPGMDKS AVC FYV+G C+K + CP R
Sbjct: 1 MEEIVAKVGNVVFEVEIALEQQLGALPLPFPGMDKSGAAVCCFYVQGNCSKASACPFR 58
>gi|355680860|gb|AER96663.1| cleavage and polyadenylation specific factor 4, 30kDa [Mustela
putorius furo]
Length = 102
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|126334486|ref|XP_001363797.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 1 [Monodelphis domestica]
gi|395514828|ref|XP_003761614.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 isoform 1 [Sarcophilus harrisii]
Length = 269
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQELIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|395514830|ref|XP_003761615.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 isoform 2 [Sarcophilus harrisii]
Length = 244
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQELIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|148687046|gb|EDL18993.1| cleavage and polyadenylation specific factor 4, isoform CRA_b
[Mus musculus]
Length = 251
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/55 (56%), Positives = 41/55 (74%)
Query: 4 LVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 28 IIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 82
>gi|344243027|gb|EGV99130.1| Cleavage and polyadenylation specificity factor subunit 4
[Cricetulus griseus]
Length = 274
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|119597069|gb|EAW76663.1| cleavage and polyadenylation specific factor 4, 30kDa, isoform
CRA_b [Homo sapiens]
Length = 255
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|29792109|gb|AAH50738.1| CPSF4 protein [Homo sapiens]
gi|119597071|gb|EAW76665.1| cleavage and polyadenylation specific factor 4, 30kDa, isoform
CRA_d [Homo sapiens]
gi|312153176|gb|ADQ33100.1| cleavage and polyadenylation specific factor 4, 30kDa [synthetic
construct]
Length = 243
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|59891425|ref|NP_001012351.1| cleavage and polyadenylation specificity factor subunit 4 [Rattus
norvegicus]
gi|81882852|sp|Q5FVR7.1|CPSF4_RAT RecName: Full=Cleavage and polyadenylation specificity factor
subunit 4; AltName: Full=Cleavage and polyadenylation
specificity factor 30 kDa subunit; Short=CPSF 30 kDa
subunit
gi|58476448|gb|AAH89824.1| Cleavage and polyadenylation specific factor 4 [Rattus
norvegicus]
gi|183229546|gb|ACC60271.1| cleavage and polyadenylation specific factor 4 isoform 1 [Mus
musculus]
Length = 243
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|30466247|ref|NP_848671.1| cleavage and polyadenylation specificity factor subunit 4 [Mus
musculus]
gi|348568560|ref|XP_003470066.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 3 [Cavia porcellus]
gi|37999672|sp|Q8BQZ5.1|CPSF4_MOUSE RecName: Full=Cleavage and polyadenylation specificity factor
subunit 4; AltName: Full=Cleavage and polyadenylation
specificity factor 30 kDa subunit; Short=CPSF 30 kDa
subunit; AltName: Full=Clipper homolog; AltName:
Full=Clipper/CPSF 30K
gi|26337803|dbj|BAC32587.1| unnamed protein product [Mus musculus]
Length = 211
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|50755569|ref|XP_414800.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 [Gallus gallus]
Length = 243
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A+V++IKFD+E+A+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQELIASVDHIKFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|357625054|gb|EHJ75607.1| cleavage and polyadenylation specific factor 4 [Danaus plexippus]
Length = 287
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVR-GECNKDTMCPLR 58
ME +VANV++IKFDI+ ALE Q+ LP PFPGMDKS AVCEFY + G C CP R
Sbjct: 1 MEVIVANVDHIKFDIDYALEQQYGALPLPFPGMDKSTAAVCEFYSQPGGCGNGPQCPYR 59
>gi|18859059|ref|NP_571084.1| cleavage and polyadenylation specificity factor subunit 4 [Danio
rerio]
gi|1575709|gb|AAC60040.1| no arches [Danio rerio]
gi|28277462|gb|AAH45289.1| No arches [Danio rerio]
gi|182888966|gb|AAI64456.1| Nar protein [Danio rerio]
Length = 271
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A V++IKFD+EIA+E Q P PFPGMDKS AVCE+++R C K MCP R
Sbjct: 1 MQELIATVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEYFMRAACMKGGMCPFR 58
>gi|291229317|ref|XP_002734616.1| PREDICTED: cleavage and polyadenylation specificity factor,
putative-like [Saccoglossus kowalevskii]
Length = 276
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ +V+NV NIKFDIE+ALE Q +P PFPGMDKS +A+C F+ +G+C K CP R
Sbjct: 1 MQNIVSNVSNIKFDIELALEQQLGSIPLPFPGMDKSGSAICVFFKQGDCLKGGSCPFR 58
>gi|291411293|ref|XP_002721910.1| PREDICTED: cleavage and polyadenylation specific factor 4, 30kDa
isoform 1 [Oryctolagus cuniculus]
Length = 244
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|149755352|ref|XP_001494983.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 2 [Equus caballus]
gi|301777648|ref|XP_002924238.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 2 [Ailuropoda melanoleuca]
gi|348568556|ref|XP_003470064.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 1 [Cavia porcellus]
gi|354495217|ref|XP_003509727.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like [Cricetulus griseus]
gi|410984389|ref|XP_003998511.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 isoform 2 [Felis catus]
gi|183229548|gb|ACC60272.1| cleavage and polyadenylation specific factor 4 isoform 2 [Mus
musculus]
Length = 244
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|73957938|ref|XP_860761.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 isoform 3 [Canis lupus familiaris]
Length = 244
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|27806837|ref|NP_776367.1| cleavage and polyadenylation specificity factor subunit 4 [Bos
taurus]
gi|75057446|sp|O19137.1|CPSF4_BOVIN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 4; AltName: Full=Cleavage and polyadenylation
specificity factor 30 kDa subunit; Short=CPSF 30 kDa
subunit
gi|2327052|gb|AAC48759.1| cleavage and polyadenylation specificity factor 30 kDa subunit
[Bos taurus]
gi|296472897|tpg|DAA15012.1| TPA: cleavage and polyadenylation specificity factor subunit 4
[Bos taurus]
Length = 243
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|417397723|gb|JAA45895.1| Putative polyadenylation factor i complex subunit yth1 cpsf
subunit [Desmodus rotundus]
Length = 243
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|395852820|ref|XP_003798928.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 isoform 1 [Otolemur garnettii]
Length = 244
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|344289702|ref|XP_003416580.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 2 [Loxodonta africana]
Length = 244
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|332867112|ref|XP_001137776.2| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 isoform 6 [Pan troglodytes]
gi|397489492|ref|XP_003815760.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 isoform 1 [Pan paniscus]
gi|410214166|gb|JAA04302.1| cleavage and polyadenylation specific factor 4, 30kDa [Pan
troglodytes]
gi|410249440|gb|JAA12687.1| cleavage and polyadenylation specific factor 4, 30kDa [Pan
troglodytes]
gi|410289412|gb|JAA23306.1| cleavage and polyadenylation specific factor 4, 30kDa [Pan
troglodytes]
gi|410353007|gb|JAA43107.1| cleavage and polyadenylation specific factor 4, 30kDa [Pan
troglodytes]
Length = 244
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|291411295|ref|XP_002721911.1| PREDICTED: cleavage and polyadenylation specific factor 4, 30kDa
isoform 2 [Oryctolagus cuniculus]
Length = 269
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|125987603|ref|NP_001075028.1| cleavage and polyadenylation specificity factor subunit 4 isoform
2 [Homo sapiens]
gi|383872422|ref|NP_001244547.1| cleavage and polyadenylation specificity factor subunit 4 [Macaca
mulatta]
gi|332258048|ref|XP_003278115.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 [Nomascus leucogenys]
gi|402862922|ref|XP_003895787.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 isoform 1 [Papio anubis]
gi|403285963|ref|XP_003934278.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 isoform 1 [Saimiri boliviensis boliviensis]
gi|426357074|ref|XP_004045873.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 isoform 1 [Gorilla gorilla gorilla]
gi|13111867|gb|AAH03101.1| Cleavage and polyadenylation specific factor 4, 30kDa [Homo
sapiens]
gi|119597070|gb|EAW76664.1| cleavage and polyadenylation specific factor 4, 30kDa, isoform
CRA_c [Homo sapiens]
gi|380809014|gb|AFE76382.1| cleavage and polyadenylation specificity factor subunit 4 isoform
2 [Macaca mulatta]
gi|383413435|gb|AFH29931.1| cleavage and polyadenylation specificity factor subunit 4 isoform
2 [Macaca mulatta]
gi|384940112|gb|AFI33661.1| cleavage and polyadenylation specificity factor subunit 4 isoform
2 [Macaca mulatta]
Length = 244
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|73957940|ref|XP_850149.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 isoform 2 [Canis lupus familiaris]
Length = 269
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|346471839|gb|AEO35764.1| hypothetical protein [Amblyomma maculatum]
gi|346471841|gb|AEO35765.1| hypothetical protein [Amblyomma maculatum]
Length = 283
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 42/58 (72%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME +VA V N+ F++EIALE Q LP PFPGMDKS AVC FYV+G C+K + CP R
Sbjct: 1 MEEIVAKVGNVVFELEIALEQQLGALPLPFPGMDKSGAAVCCFYVQGNCSKASACPFR 58
>gi|432115228|gb|ELK36738.1| Cleavage and polyadenylation specificity factor subunit 4 [Myotis
davidii]
Length = 269
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|332867114|ref|XP_519234.3| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 isoform 7 [Pan troglodytes]
gi|397489494|ref|XP_003815761.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 isoform 2 [Pan paniscus]
gi|410214168|gb|JAA04303.1| cleavage and polyadenylation specific factor 4, 30kDa [Pan
troglodytes]
gi|410249442|gb|JAA12688.1| cleavage and polyadenylation specific factor 4, 30kDa [Pan
troglodytes]
gi|410289414|gb|JAA23307.1| cleavage and polyadenylation specific factor 4, 30kDa [Pan
troglodytes]
gi|410353009|gb|JAA43108.1| cleavage and polyadenylation specific factor 4, 30kDa [Pan
troglodytes]
Length = 269
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|5729939|ref|NP_006684.1| cleavage and polyadenylation specificity factor subunit 4 isoform
1 [Homo sapiens]
gi|402862924|ref|XP_003895788.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 isoform 2 [Papio anubis]
gi|426357076|ref|XP_004045874.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 isoform 2 [Gorilla gorilla gorilla]
gi|37999487|sp|O95639.1|CPSF4_HUMAN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 4; AltName: Full=Cleavage and polyadenylation
specificity factor 30 kDa subunit; Short=CPSF 30 kDa
subunit; AltName: Full=NS1 effector domain-binding
protein 1; Short=Neb-1; AltName: Full=No arches homolog
gi|4098572|gb|AAD00321.1| no arches [Homo sapiens]
gi|49457318|emb|CAG46958.1| CPSF4 [Homo sapiens]
gi|51094626|gb|EAL23878.1| cleavage and polyadenylation specific factor 4, 30kDa [Homo
sapiens]
gi|119597073|gb|EAW76667.1| cleavage and polyadenylation specific factor 4, 30kDa, isoform
CRA_f [Homo sapiens]
gi|119597074|gb|EAW76668.1| cleavage and polyadenylation specific factor 4, 30kDa, isoform
CRA_f [Homo sapiens]
gi|124302214|gb|ABN05292.1| cleavage and polyadenylation specific factor 4, 30kDa [Homo
sapiens]
gi|261861580|dbj|BAI47312.1| cleavage and polyadenylation specific factor 4, 30kDa [synthetic
construct]
gi|355560471|gb|EHH17157.1| hypothetical protein EGK_13489 [Macaca mulatta]
gi|355747522|gb|EHH52019.1| hypothetical protein EGM_12382 [Macaca fascicularis]
gi|380809012|gb|AFE76381.1| cleavage and polyadenylation specificity factor subunit 4 isoform
1 [Macaca mulatta]
gi|383413433|gb|AFH29930.1| cleavage and polyadenylation specificity factor subunit 4 isoform
1 [Macaca mulatta]
gi|384940110|gb|AFI33660.1| cleavage and polyadenylation specificity factor subunit 4 isoform
1 [Macaca mulatta]
Length = 269
Score = 72.4 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|395852822|ref|XP_003798929.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 isoform 2 [Otolemur garnettii]
Length = 269
Score = 72.4 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|344289700|ref|XP_003416579.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 1 [Loxodonta africana]
Length = 269
Score = 72.4 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|335284056|ref|XP_003354505.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 2 [Sus scrofa]
Length = 244
Score = 72.4 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|149755350|ref|XP_001494963.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 1 [Equus caballus]
gi|301777646|ref|XP_002924237.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 1 [Ailuropoda melanoleuca]
gi|348568558|ref|XP_003470065.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 2 [Cavia porcellus]
gi|410984387|ref|XP_003998510.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 isoform 1 [Felis catus]
gi|431908022|gb|ELK11629.1| Cleavage and polyadenylation specificity factor subunit 4
[Pteropus alecto]
Length = 269
Score = 72.4 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|311250935|ref|XP_003124350.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 1 [Sus scrofa]
Length = 269
Score = 72.4 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|148687045|gb|EDL18992.1| cleavage and polyadenylation specific factor 4, isoform CRA_a
[Mus musculus]
Length = 292
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/55 (56%), Positives = 41/55 (74%)
Query: 4 LVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 28 IIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 82
>gi|9711035|dbj|BAB07796.1| no arches [Danio rerio]
Length = 190
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A V++IKFD+EIA+E Q P PFPGMDKS AVCE+++R C K MCP R
Sbjct: 1 MQELIATVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEYFMRAACMKGGMCPFR 58
>gi|387015182|gb|AFJ49710.1| Cleavage and polyadenylation specificity factor subunit 4-like
[Crotalus adamanteus]
Length = 268
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A+V++IKFD+EIA+E Q P PFPGMDKS AVC+F+++ C K MCP R
Sbjct: 1 MQELIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCDFFLKAACGKGGMCPFR 58
>gi|281349874|gb|EFB25458.1| hypothetical protein PANDA_013548 [Ailuropoda melanoleuca]
Length = 252
Score = 72.0 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|443697259|gb|ELT97794.1| hypothetical protein CAPTEDRAFT_180092 [Capitella teleta]
Length = 274
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 42/58 (72%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ +VANV+N KFDIEIALE Q P PFPGMDKS +A+C F+++ C++ CP R
Sbjct: 1 MQAIVANVQNTKFDIEIALERQVGATPLPFPGMDKSGSAICTFHMQAMCSRGIACPFR 58
>gi|114052376|ref|NP_001040511.1| cleavage and polyadenylation specific factor 4 [Bombyx mori]
gi|95102612|gb|ABF51244.1| cleavage and polyadenylation specific factor 4 [Bombyx mori]
Length = 288
Score = 71.6 bits (174), Expect = 6e-11, Method: Composition-based stats.
Identities = 36/59 (61%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVR-GECNKDTMCPLR 58
ME +VANVE+IKF I+ ALE Q+ LP PFPGMDKS AVCEFY + G C CP R
Sbjct: 1 MEVIVANVEHIKFAIDYALEEQYGALPLPFPGMDKSTAAVCEFYSQPGGCGNGAQCPYR 59
>gi|225718956|gb|ACO15324.1| Cleavage and polyadenylation specificity factor subunit 4
[Caligus clemensi]
Length = 295
Score = 71.2 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 35/58 (60%), Positives = 40/58 (68%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ LVA V++I+F IE LENQ P PFPGMDKS AVCEFYV+ C K T CP R
Sbjct: 1 MDRLVAPVDHIRFKIENDLENQVGSRPLPFPGMDKSGAAVCEFYVKATCAKGTSCPFR 58
>gi|318187062|ref|NP_001187768.1| cleavage and polyadenylation specificity factor subunit 4
[Ictalurus punctatus]
gi|308323923|gb|ADO29097.1| cleavage and polyadenylation specificity factor subunit 4
[Ictalurus punctatus]
Length = 271
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 41/58 (70%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++AN ++ KFD+EIA+E Q P PFPGMDKS AVCEF++R C K MCP R
Sbjct: 1 MQEIIANADHFKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFMRSACLKGGMCPFR 58
>gi|293352395|ref|XP_002727980.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like isoform 1 [Rattus norvegicus]
Length = 243
Score = 71.2 bits (173), Expect = 8e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+ IA+E Q P PFPGMDKS TAVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLAIAVEQQLGAQPLPFPGMDKSGTAVCEFFLKAACGKVHMCPFR 58
>gi|427788143|gb|JAA59523.1| Putative polyadenylation factor i complex subunit yth1 cpsf
subunit [Rhipicephalus pulchellus]
Length = 283
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 42/58 (72%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME +VA V N+ F++E+ALE Q LP PFPGMDKS AVC FYV+G C+K + CP R
Sbjct: 1 MEEIVAKVGNVVFELEMALEQQLGALPLPFPGMDKSGAAVCCFYVQGNCSKASACPFR 58
>gi|5931741|emb|CAB56623.1| zinc finger protein [Rattus norvegicus]
Length = 229
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 5 VANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
+A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 4 IASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 57
>gi|89266751|emb|CAJ83570.1| novel protein similar to cpsf4 [Xenopus (Silurana) tropicalis]
Length = 279
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/58 (53%), Positives = 42/58 (72%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A V++I+FD+E+A+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQELIACVDHIRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFR 58
>gi|449476092|ref|XP_002192710.2| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4 [Taeniopygia guttata]
Length = 243
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 42/58 (72%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A+V++I FD+E+A+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQELIASVDHITFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>gi|56118476|ref|NP_001007933.1| cleavage and polyadenylation specificity factor subunit 4
[Xenopus (Silurana) tropicalis]
gi|82181478|sp|Q66KE3.1|CPSF4_XENTR RecName: Full=Cleavage and polyadenylation specificity factor
subunit 4
gi|51513396|gb|AAH80440.1| cpsf4 protein [Xenopus (Silurana) tropicalis]
Length = 269
Score = 70.5 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/58 (53%), Positives = 42/58 (72%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A V++I+FD+E+A+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQELIACVDHIRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFR 58
>gi|260824375|ref|XP_002607143.1| hypothetical protein BRAFLDRAFT_118661 [Branchiostoma floridae]
gi|229292489|gb|EEN63153.1| hypothetical protein BRAFLDRAFT_118661 [Branchiostoma floridae]
Length = 300
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/58 (53%), Positives = 41/58 (70%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME +VA+V I+F++EIA+E Q P PFPGMDKS A+C+++VRG C K CP R
Sbjct: 1 MEVVVASVGGIRFEMEIAIEEQRGSQPLPFPGMDKSGAAICDYFVRGSCVKGASCPFR 58
>gi|148231564|ref|NP_001086337.1| cleavage and polyadenylation specificity factor subunit 4
[Xenopus laevis]
gi|82183649|sp|Q6DJP7.1|CPSF4_XENLA RecName: Full=Cleavage and polyadenylation specificity factor
subunit 4
gi|49522087|gb|AAH75128.1| MGC81862 protein [Xenopus laevis]
Length = 269
Score = 68.9 bits (167), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/58 (51%), Positives = 42/58 (72%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A V++++FD+E+A+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQELIACVDHLRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFR 58
>gi|195999310|ref|XP_002109523.1| hypothetical protein TRIADDRAFT_53642 [Trichoplax adhaerens]
gi|190587647|gb|EDV27689.1| hypothetical protein TRIADDRAFT_53642 [Trichoplax adhaerens]
Length = 257
Score = 68.2 bits (165), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/58 (51%), Positives = 39/58 (67%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME ++ANV+NIKF IE L++Q PFPGMDKS AVC ++ +C K +MCP R
Sbjct: 1 MESIIANVDNIKFTIEFELDDQIGTQQLPFPGMDKSGAAVCTYFAESQCVKGSMCPFR 58
>gi|391333788|ref|XP_003741292.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like [Metaseiulus occidentalis]
Length = 269
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME LVAN +++ F+IE+AL+ Q P PFPGMD+S+ C FY+RG+C D CP R
Sbjct: 1 MEELVANCKDVVFEIELALDQQLGAAPLPFPGMDRSVALACTFYMRGKCTMDASCPFR 58
>gi|392332511|ref|XP_003752602.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like [Rattus norvegicus]
Length = 247
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 4/62 (6%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNK----DTMCP 56
M+ ++A+V++IKFD+ IA+E Q P PFPGMDKS TAVCEF+++ C K MCP
Sbjct: 1 MQEIIASVDHIKFDLAIAVEQQLGAQPLPFPGMDKSGTAVCEFFLKAACGKVQLLGGMCP 60
Query: 57 LR 58
R
Sbjct: 61 FR 62
>gi|395533099|ref|XP_003768601.1| PREDICTED: putative cleavage and polyadenylation specificity
factor subunit 4-like protein [Sarcophilus harrisii]
Length = 170
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 39/58 (67%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A +E I FD+E +ENQ I PFPGMDKS AVC F+++G C K +CP R
Sbjct: 1 MQELIAGLEKISFDLEDDVENQRGIGFLPFPGMDKSGVAVCTFFLKGLCEKGKLCPFR 58
>gi|156381166|ref|XP_001632137.1| predicted protein [Nematostella vectensis]
gi|156219188|gb|EDO40074.1| predicted protein [Nematostella vectensis]
Length = 173
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ +VA++ +I +IE L+NQ + PFPGMDKS AVC+F+V+G CN+ CP R
Sbjct: 1 MQDIVASIADITLEIEYQLKNQIGCISLPFPGMDKSSAAVCDFFVKGLCNRGAYCPFR 58
>gi|62857541|ref|NP_001016803.1| cleavage and polyadenylation specific factor 4-like [Xenopus
(Silurana) tropicalis]
gi|89273947|emb|CAJ82303.1| novel protein similar to cpsf4 [Xenopus (Silurana) tropicalis]
Length = 269
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 38/58 (65%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A++E FD+E +E Q L PF GMDKS AVC+FYV+G C K + CP R
Sbjct: 1 MQELIASIEKFSFDLEKDIEGQRGALLLPFQGMDKSGAAVCDFYVKGICRKGSTCPFR 58
>gi|321469733|gb|EFX80712.1| hypothetical protein DAPPUDRAFT_51128 [Daphnia pulex]
Length = 242
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A + NIKFDIE+ALE Q PFPGMDKS VC + +G+C + + CP R
Sbjct: 1 MDTVMAPIANIKFDIEVALEQQLGAQNLPFPGMDKSTAMVCTLFTKGQCQRASFCPYR 58
>gi|334322934|ref|XP_001378504.2| PREDICTED: putative cleavage and polyadenylation specificity
factor subunit 4-like protein-like [Monodelphis
domestica]
Length = 312
Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 39/58 (67%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A +E + F++E +ENQ + PFPGMDKS AVC F+++G C K +CP R
Sbjct: 1 MQELIAGLEKMTFNLEEDVENQRGVGYLPFPGMDKSGVAVCTFFLKGFCEKGQLCPFR 58
>gi|198430431|ref|XP_002129809.1| PREDICTED: similar to Cleavage and polyadenylation specificity
factor subunit 4 (Cleavage and polyadenylation
specificity factor 30 kDa subunit) (CPSF 30 kDa
subunit) (NS1 effector domain-binding protein 1)
(Neb-1) (No arches homolog) [Ciona intestinalis]
Length = 286
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ +VAN++++KFD+E A++ Q + P PF GMDKS VC F+ C + CP R
Sbjct: 1 MQEVVANLDHVKFDLEYAIDQQLGVQPLPFTGMDKSGAPVCHFFKLSICQRGANCPFR 58
>gi|340378269|ref|XP_003387650.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like [Amphimedon queenslandica]
Length = 277
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%)
Query: 4 LVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
++NV++ +F+IE L Q +P PFPGMDK+ +CEF+++G C++ CP R
Sbjct: 5 YISNVDDYEFEIEQLLAEQVGAIPLPFPGMDKNKAPLCEFFLQGTCSRGFNCPYR 59
>gi|339245011|ref|XP_003378431.1| cleavage and polyadenylation specificity factor protein subunit 4
[Trichinella spiralis]
gi|316972658|gb|EFV56324.1| cleavage and polyadenylation specificity factor protein subunit 4
[Trichinella spiralis]
Length = 310
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 35/52 (67%)
Query: 7 NVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
N ++ F++E +L++Q + P PFPGMDK+ +A+C F+ C T+CPLR
Sbjct: 20 NASDVVFEVEKSLQSQQGLQPLPFPGMDKTGSAMCTFFRVSTCRLGTLCPLR 71
>gi|170046237|ref|XP_001850680.1| cleavage and polyadenylation specificity factor subunit 4 [Culex
quinquefasciatus]
gi|167869066|gb|EDS32449.1| cleavage and polyadenylation specificity factor subunit 4 [Culex
quinquefasciatus]
Length = 291
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYV---RGECNKDTMCPL 57
M+ L+ANV+++ F IE L Q LP PFPGMDKS AVC F+ EC K CP
Sbjct: 1 MDFLIANVDDVVFKIEKDLNEQFGALPLPFPGMDKSTAAVCLFFNGTDGTECEKGAGCPF 60
Query: 58 R 58
R
Sbjct: 61 R 61
>gi|354466607|ref|XP_003495765.1| PREDICTED: putative cleavage and polyadenylation specificity
factor subunit 4-like protein-like [Cricetulus griseus]
Length = 193
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME ++A +E + F E +E Q PF GMDKS +AVC F+ +G C K T+CPLR
Sbjct: 1 MEEVIAALEGVTFAFEQDVELQKGTGLLPFQGMDKSNSAVCNFFAKGLCEKGTLCPLR 58
>gi|344236286|gb|EGV92389.1| Putative cleavage and polyadenylation specificity factor subunit
4-like protein [Cricetulus griseus]
Length = 216
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME ++A +E + F E +E Q PF GMDKS +AVC F+ +G C K T+CPLR
Sbjct: 1 MEEVIAALEGVTFAFEQDVELQKGTGLLPFQGMDKSNSAVCNFFAKGLCEKGTLCPLR 58
>gi|74145512|dbj|BAE36185.1| unnamed protein product [Mus musculus]
gi|148702472|gb|EDL34419.1| DNA segment, Chr 11, ERATO Doi 636, expressed, isoform CRA_a [Mus
musculus]
Length = 160
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME ++A ++ F E+ +E+Q PF GMDKS +AVC F+ +G C K +CPLR
Sbjct: 1 MEEVIAGLQGFTFAFELDVESQKGTGLLPFQGMDKSSSAVCNFFAKGLCVKGMLCPLR 58
>gi|431908818|gb|ELK12410.1| Putative cleavage and polyadenylation specificity factor subunit
4-like protein [Pteropus alecto]
Length = 224
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 35/58 (60%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME ++A +E F E +E Q I PF GMDKS +AVC F+ +G C K +CPLR
Sbjct: 1 MEEVIAGLEGFTFAFEKDVEMQRGIGLLPFQGMDKSGSAVCNFFAKGLCEKGKLCPLR 58
>gi|402900921|ref|XP_003913409.1| PREDICTED: putative cleavage and polyadenylation specificity
factor subunit 4-like protein [Papio anubis]
Length = 179
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A +E F E +E Q PFPGMDKS +AVC F+ +G C K +CP R
Sbjct: 1 MQEVIAGLERFTFAFEEDVEMQKGTGLLPFPGMDKSASAVCNFFAKGLCEKGKLCPFR 58
>gi|2687591|gb|AAC53567.1| clipper/cleavage and polyadenylation specificity factor 30 kDa
subunit homolog [Mus musculus]
Length = 208
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 28/42 (66%)
Query: 17 IALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
IA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 4 IAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 45
>gi|355568881|gb|EHH25162.1| hypothetical protein EGK_08934 [Macaca mulatta]
gi|355754343|gb|EHH58308.1| hypothetical protein EGM_08126 [Macaca fascicularis]
Length = 179
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A +E F E +E Q PFPGMDKS +AVC F+ +G C K +CP R
Sbjct: 1 MQEVIAGLERFTFAFEEDVEMQKGTGLLPFPGMDKSASAVCNFFAKGLCEKGKLCPFR 58
>gi|17137188|ref|NP_477156.1| clipper [Drosophila melanogaster]
gi|7296160|gb|AAF51453.1| clipper [Drosophila melanogaster]
gi|90855755|gb|ABE01239.1| IP02509p [Drosophila melanogaster]
gi|220952324|gb|ACL88705.1| Clp-PA [synthetic construct]
gi|220958742|gb|ACL91914.1| Clp-PA [synthetic construct]
Length = 296
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRG--ECNKDTMCPLR 58
M+ L+ANV ++F E L Q +P PF GMDKS+ AVC F R EC+K + CP R
Sbjct: 1 MDILLANVSGLQFKAERDLIEQVGAIPLPFYGMDKSIAAVCNFITRNGQECDKGSACPFR 60
>gi|347968471|ref|XP_003436228.1| AGAP013044-PA [Anopheles gambiae str. PEST]
gi|333467988|gb|EGK96785.1| AGAP013044-PA [Anopheles gambiae str. PEST]
Length = 296
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRG---ECNKDTMCPL 57
M+ L+ANV++ F IE L Q+ L PFPGMDKS AVC F+ EC K CP
Sbjct: 1 MDMLIANVDSWTFKIEKDLNEQYGALALPFPGMDKSTAAVCLFFNASDGTECKKGNSCPF 60
Query: 58 R 58
R
Sbjct: 61 R 61
>gi|847869|gb|AAA67954.1| zinc finger protein [Drosophila melanogaster]
Length = 296
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRG--ECNKDTMCPLR 58
M+ L+ANV ++F E L Q +P PF GMDKS+ AVC F R EC+K + CP R
Sbjct: 1 MDILLANVSGLQFKAERDLIEQVGAIPLPFYGMDKSIAAVCNFITRNGQECDKGSACPFR 60
>gi|117935458|gb|ABK57069.1| IP02511p [Drosophila melanogaster]
Length = 320
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRG--ECNKDTMCPLR 58
M+ L+ANV ++F E L Q +P PF GMDKS+ AVC F R EC+K + CP R
Sbjct: 25 MDILLANVSGLQFKAERDLIEQVGAIPLPFYGMDKSIAAVCNFITRNGQECDKGSACPFR 84
>gi|390176610|ref|XP_001356742.2| GA17582 [Drosophila pseudoobscura pseudoobscura]
gi|388858696|gb|EAL33807.2| GA17582 [Drosophila pseudoobscura pseudoobscura]
Length = 282
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRG--ECNKDTMCPLR 58
M+ L+ANV +++F E L Q +P PF GMDKS+ AVC F R EC+K + CP R
Sbjct: 1 MDILLANVNSLQFKAERDLIEQVGAIPLPFYGMDKSIAAVCNFITRSGQECDKGSACPFR 60
>gi|291406461|ref|XP_002719268.1| PREDICTED: cleavage and polyadenylation specific factor 4-like
[Oryctolagus cuniculus]
Length = 184
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A +E F E +E Q PF GMDKS +AVC F+ +G C K+T+CP R
Sbjct: 1 MQEVIAGLERFTFTFEHDVEMQRGTGLLPFQGMDKSSSAVCNFFPKGPCAKETLCPFR 58
>gi|148702474|gb|EDL34421.1| DNA segment, Chr 11, ERATO Doi 636, expressed, isoform CRA_c [Mus
musculus]
Length = 238
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME ++A ++ F E+ +E+Q PF GMDKS +AVC F+ +G C K +CPLR
Sbjct: 11 MEEVIAGLQGFTFAFELDVESQKGTGLLPFQGMDKSSSAVCNFFAKGLCVKGMLCPLR 68
>gi|256985198|ref|NP_080958.2| cleavage and polyadenylation specific factor 4-like isoform 1
[Mus musculus]
Length = 228
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME ++A ++ F E+ +E+Q PF GMDKS +AVC F+ +G C K +CPLR
Sbjct: 1 MEEVIAGLQGFTFAFELDVESQKGTGLLPFQGMDKSSSAVCNFFAKGLCVKGMLCPLR 58
>gi|148702475|gb|EDL34422.1| DNA segment, Chr 11, ERATO Doi 636, expressed, isoform CRA_d [Mus
musculus]
Length = 227
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME ++A ++ F E+ +E+Q PF GMDKS +AVC F+ +G C K +CPLR
Sbjct: 1 MEEVIAGLQGFTFAFELDVESQKGTGLLPFQGMDKSSSAVCNFFAKGLCVKGMLCPLR 58
>gi|410981626|ref|XP_003997168.1| PREDICTED: putative cleavage and polyadenylation specificity
factor subunit 4-like protein [Felis catus]
Length = 166
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A +E F E +E Q PF GMDKS +AVC F+ +G C K +CPLR
Sbjct: 1 MQEIIAGLEQFTFTFEKDVEMQKGTGLLPFQGMDKSGSAVCNFFAKGLCEKGKLCPLR 58
>gi|256077604|ref|XP_002575092.1| hypothetical protein [Schistosoma mansoni]
gi|360045196|emb|CCD82744.1| hypothetical protein Smp_037380 [Schistosoma mansoni]
Length = 307
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A+V +I F IE LENQ + PF M+KS VC F++ +C + +CPLR
Sbjct: 1 MDNLIADVSDIDFIIESQLENQIGLGCLPFSNMNKSGAGVCRFFITNQCPLNNLCPLR 58
>gi|119609527|gb|EAW89121.1| hCG1641439 [Homo sapiens]
Length = 143
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A +E F E +E Q PF GMDKS +AVC F+ +G C K +CP R
Sbjct: 1 MQEVIAGLERFTFAFEKDVEMQKGTGLLPFQGMDKSASAVCNFFTKGLCEKGKLCPFR 58
>gi|149054709|gb|EDM06526.1| similar to hypothetical protein D11Ertd636e (predicted), isoform
CRA_c [Rattus norvegicus]
Length = 160
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME ++A ++ F E +E Q PF GMDKS +AVC F+ +G C K +CPLR
Sbjct: 1 MEEVIAGLQGFTFTFEQDVELQRGTGLLPFQGMDKSSSAVCNFFAKGLCVKGMLCPLR 58
>gi|301781634|ref|XP_002926233.1| PREDICTED: putative cleavage and polyadenylation specificity
factor subunit 4-like protein-like [Ailuropoda
melanoleuca]
Length = 166
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A +E + F E +E Q PF GMDKS +AVC F+ +G C K +CP R
Sbjct: 1 MQEVIAGLEQLTFTFEKDVELQKGTGLLPFQGMDKSSSAVCNFFAKGLCEKGKLCPFR 58
>gi|193788659|ref|NP_001123357.1| putative cleavage and polyadenylation specificity factor subunit
4-like protein [Homo sapiens]
gi|332848949|ref|XP_001149545.2| PREDICTED: putative cleavage and polyadenylation specificity
factor subunit 4-like protein [Pan troglodytes]
gi|206729925|sp|A6NMK7.3|CPS4L_HUMAN RecName: Full=Putative cleavage and polyadenylation specificity
factor subunit 4-like protein
gi|187957320|gb|AAI57871.1| CPSF4L protein [Homo sapiens]
Length = 179
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A +E F E +E Q PF GMDKS +AVC F+ +G C K +CP R
Sbjct: 1 MQEVIAGLERFTFAFEKDVEMQKGTGLLPFQGMDKSASAVCNFFTKGLCEKGKLCPFR 58
>gi|426346925|ref|XP_004041119.1| PREDICTED: putative cleavage and polyadenylation specificity
factor subunit 4-like protein [Gorilla gorilla gorilla]
Length = 179
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A +E F E +E Q PF GMDKS +AVC F+ +G C K +CP R
Sbjct: 1 MQEVIAGLERFTFAFEKDVEMQKGTGLLPFQGMDKSASAVCNFFTKGLCEKGKLCPFR 58
>gi|332261216|ref|XP_003279670.1| PREDICTED: putative cleavage and polyadenylation specificity
factor subunit 4-like protein [Nomascus leucogenys]
Length = 179
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A +E F E +E Q PF GMDKS +AVC F+ +G C K +CP R
Sbjct: 1 MQEVIAGLERFTFAFEKDVEMQKGTGLLPFQGMDKSASAVCNFFTKGLCEKGKLCPFR 58
>gi|344291043|ref|XP_003417246.1| PREDICTED: LOW QUALITY PROTEIN: putative cleavage and
polyadenylation specificity factor subunit 4-like
protein-like [Loxodonta africana]
Length = 185
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME ++A ++ F E +E Q + PF GMDKS +AVC F+ +G C K CP R
Sbjct: 1 MEEVIAGLQRFTFAFEEDVEMQKGVGLLPFQGMDKSGSAVCTFFTKGLCGKGKRCPFR 58
>gi|226480092|emb|CAX73342.1| Cleavage and polyadenylation specificity factor subunit 4
[Schistosoma japonicum]
Length = 307
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A+V +I F IE LENQ + PF M+KS VC F++ +C +CPLR
Sbjct: 1 MDNLIADVSDIDFIIESQLENQIGLGCLPFSNMNKSGAGVCRFFIINQCPLSNLCPLR 58
>gi|109492168|ref|XP_001081632.1| PREDICTED: cleavage and polyadenylation specific factor 4-like
[Rattus norvegicus]
gi|392351710|ref|XP_221075.5| PREDICTED: cleavage and polyadenylation specific factor 4-like
[Rattus norvegicus]
Length = 228
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME ++A ++ F E +E Q PF GMDKS +AVC F+ +G C K +CPLR
Sbjct: 1 MEEVIAGLQGFTFTFEQDVELQRGTGLLPFQGMDKSSSAVCNFFAKGLCVKGMLCPLR 58
>gi|149054708|gb|EDM06525.1| similar to hypothetical protein D11Ertd636e (predicted), isoform
CRA_b [Rattus norvegicus]
Length = 225
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME ++A ++ F E +E Q PF GMDKS +AVC F+ +G C K +CPLR
Sbjct: 1 MEEVIAGLQGFTFTFEQDVELQRGTGLLPFQGMDKSSSAVCNFFAKGLCVKGMLCPLR 58
>gi|194216707|ref|XP_001493296.2| PREDICTED: putative cleavage and polyadenylation specificity
factor subunit 4-like protein-like [Equus caballus]
Length = 198
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A + F E +E Q PF GMDKS +AVC F+ +G C K +CP R
Sbjct: 1 MQEVIAGLGRFTFTFEKDVEMQKGTGLLPFQGMDKSSSAVCNFFAKGLCEKGKLCPFR 58
>gi|297701675|ref|XP_002827828.1| PREDICTED: putative cleavage and polyadenylation specificity
factor subunit 4-like protein [Pongo abelii]
Length = 179
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A +E F E +E Q PF GM+KS +AVC F+ +G C K +CP R
Sbjct: 1 MQEVIAGLERFTFAFEKDVEMQKGAGLLPFQGMNKSASAVCNFFTKGLCEKGKLCPFR 58
>gi|311266873|ref|XP_003131299.1| PREDICTED: LOW QUALITY PROTEIN: putative cleavage and
polyadenylation specificity factor subunit 4-like
protein-like [Sus scrofa]
Length = 214
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLRP 59
M+ + A +E F E +E Q PF GMD+S +AVC F+ +G C+K +CP P
Sbjct: 1 MQEVSAGLERFTFTFEEDVELQRGTGLLPFQGMDRSGSAVCSFFAKGLCHKGKLCPFXP 59
>gi|320165321|gb|EFW42220.1| zinc finger protein [Capsaspora owczarzaki ATCC 30864]
Length = 184
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 4 LVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
L++NV+ FD+E L+ Q F GMDKS +C+ ++RG+C K C R
Sbjct: 5 LLSNVDGYYFDVEEMLDQQLGGGTMTFEGMDKSGAEICKLFLRGQCKKGNSCAFR 59
>gi|358417658|ref|XP_003583705.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC790056
[Bos taurus]
Length = 752
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 4 LVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
++ +E + F E +E Q F MDKS TAVC F+ +G C K +CP R
Sbjct: 598 VIVGLERLAFAFEKEVETQKGTGLLXFQAMDKSGTAVCTFFTKGLCEKGKLCPFR 652
>gi|359077209|ref|XP_003587527.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specific factor 4-like [Bos taurus]
Length = 307
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 4 LVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
++ +E + F E +E Q F MDKS TAVC F+ +G C K +CP R
Sbjct: 153 VIVGLERLAFAFEKEVETQKGTGLLXFQAMDKSGTAVCTFFTKGLCEKGKLCPFR 207
>gi|395826008|ref|XP_003786212.1| PREDICTED: LOW QUALITY PROTEIN: putative cleavage and
polyadenylation specificity factor subunit 4-like
protein [Otolemur garnettii]
Length = 166
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPL 57
M+ ++A +E F + +E Q PF GMDKS +AVC + +G C K +CP
Sbjct: 1 MQEVIARLEGFTFAFKKDVEMQKGTGLLPFQGMDKSGSAVCNSFAKGLCKKGKLCPF 57
>gi|119597072|gb|EAW76666.1| cleavage and polyadenylation specific factor 4, 30kDa, isoform
CRA_e [Homo sapiens]
Length = 229
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMD 34
M+ ++A+V++IKFD+EIA+E Q P PFPGMD
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMD 34
>gi|324506295|gb|ADY42692.1| Cleavage and polyadenylation specificity factor subunit 4
[Ascaris suum]
Length = 342
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME +A++ D+E L Q P FPGMDKS VC +G C +CPLR
Sbjct: 27 MEDYIADIPFPLLDVEEMLIQQRGTRPVAFPGMDKSGRGVCVRNEQGTCQMGAVCPLR 84
>gi|149028482|gb|EDL83867.1| rCG64172 [Rattus norvegicus]
Length = 196
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 19 LENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPL 57
+E Q FP MDKS AVCEF+V+ C K MCP
Sbjct: 1 MEQQLGAQQLSFPSMDKSGAAVCEFFVKAACGKGGMCPF 39
>gi|312377105|gb|EFR24020.1| hypothetical protein AND_11711 [Anopheles darlingi]
Length = 251
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 27/85 (31%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMD------------------------KS 36
M+ L+ANV++ F IE L Q+ L PFPGMD +S
Sbjct: 1 MDTLIANVDSWTFKIEKDLSEQYGALALPFPGMDSKFPQRARILCQRPFRYPGVPLISES 60
Query: 37 MTAVCEFYVRG---ECNKDTMCPLR 58
AVC+F+ EC K CP R
Sbjct: 61 TAAVCQFFNASDGMECKKGNSCPFR 85
>gi|326437098|gb|EGD82668.1| mRNA 3'-end-processing protein yth1 [Salpingoeca sp. ATCC 50818]
Length = 398
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME ++++ +F++ L+ Q PF GMD S +C+ +++G C + ++CP R
Sbjct: 1 MEDSLSDLSGHEFELAKRLDAQDAAYLVPFEGMDNSGEEICKAFLQGTCTRGSLCPFR 58
>gi|393912029|gb|EJD76558.1| hypothetical protein LOAG_16507 [Loa loa]
Length = 292
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 29/58 (50%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME ++ + D+E L Q +PF GMDKS VC +G C T+CPLR
Sbjct: 22 MEDYMSGISCALLDVEEMLLQQRGAREAPFSGMDKSGRGVCIRNEQGTCIMGTVCPLR 79
>gi|170586316|ref|XP_001897925.1| zinc finger protein [Brugia malayi]
gi|158594320|gb|EDP32904.1| zinc finger protein, putative [Brugia malayi]
Length = 337
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 28/58 (48%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME ++ V D+E L Q +PF GMDKS VC +G C +CPLR
Sbjct: 22 MEDYMSGVSCALLDVEEMLIQQRGAREAPFSGMDKSGRGVCIRNEQGTCTMGAVCPLR 79
>gi|402593601|gb|EJW87528.1| cleavage and polyadenylation specific factor 4 [Wuchereria
bancrofti]
Length = 337
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 28/58 (48%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME ++ V D+E L Q +PF GMDKS VC +G C +CPLR
Sbjct: 22 MEDYMSGVSCALLDVEEMLIQQRGAREAPFSGMDKSGRGVCIRNEQGTCTMGAVCPLR 79
>gi|312069897|ref|XP_003137896.1| hypothetical protein LOAG_02310 [Loa loa]
Length = 222
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 29/58 (50%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
ME ++ + D+E L Q +PF GMDKS VC +G C T+CPLR
Sbjct: 22 MEDYMSGISCALLDVEEMLLQQRGAREAPFSGMDKSGRGVCIRNEQGTCIMGTVCPLR 79
>gi|359320205|ref|XP_003639279.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specific factor 4-like [Canis lupus familiaris]
Length = 134
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 4 LVANVENIKFDIEIALENQHDI-LPSPFPGMDKSMTAVCEFYVRGECNK 51
++A +E F E +E Q L PF GMDK +AVC F+ +G C K
Sbjct: 4 VIAGLEQFTFTFEKDVEMQKGTGLLLPFQGMDKWGSAVCNFFAKGLCEK 52
>gi|268536646|ref|XP_002633458.1| Hypothetical protein CBG06226 [Caenorhabditis briggsae]
Length = 768
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 30/58 (51%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M LV+N+ D+E AL NQ + +PF +D+S AVC +C CPLR
Sbjct: 15 MADLVSNITARSTDVEDALFNQKGMKEAPFRDLDRSGKAVCTKNKTKQCPFGNTCPLR 72
>gi|308476985|ref|XP_003100707.1| CRE-CPSF-4 protein [Caenorhabditis remanei]
gi|308264519|gb|EFP08472.1| CRE-CPSF-4 protein [Caenorhabditis remanei]
Length = 310
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 30/58 (51%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M L++N+ D+E AL NQ + +PF +D+S AVC G C CPLR
Sbjct: 25 MTDLISNITAPMTDVEEALFNQRGMKEAPFRDLDRSGRAVCRKNKLGICPFGPTCPLR 82
>gi|149034888|gb|EDL89608.1| rCG42591, isoform CRA_c [Rattus norvegicus]
Length = 180
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 33 MDKSMTAVCEFYVRGECNKDTMCPLR 58
MDKS AVCEF+++ C K MCP R
Sbjct: 1 MDKSGAAVCEFFLKAACGKGGMCPFR 26
>gi|403356826|gb|EJY78018.1| pre-mRNA-splicing factor RBM22 [Oxytricha trifallax]
Length = 434
Score = 38.1 bits (87), Expect = 0.72, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 28 SPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
S P ++ VC FYV+GECN+ CP R
Sbjct: 151 SFLPSYKRNQAHVCSFYVKGECNRGKACPYR 181
>gi|118099802|ref|XP_001234822.1| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like [Gallus gallus]
Length = 193
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSM------------TAVCEFYVRGE 48
ME LVA VE I FD+E +E Q ++ PFP S TA C +Y +G
Sbjct: 1 MEELVAGVERIGFDVEADVEQQQEVQLLPFPDECSSEDCPCPHVDATAGTAGCPWYDQGF 60
Query: 49 CNKDTMC 55
C +C
Sbjct: 61 CRHGPLC 67
>gi|149034886|gb|EDL89606.1| rCG42591, isoform CRA_a [Rattus norvegicus]
Length = 199
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 33 MDKSMTAVCEFYVRGECNKDTMCPLR 58
MDKS AVCEF+++ C K MCP R
Sbjct: 1 MDKSGAAVCEFFLKAACGKGGMCPFR 26
>gi|149034887|gb|EDL89607.1| rCG42591, isoform CRA_b [Rattus norvegicus]
Length = 158
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 33 MDKSMTAVCEFYVRGECNKDTMCPLR 58
MDKS AVCEF+++ C K MCP R
Sbjct: 1 MDKSGAAVCEFFLKAACGKGGMCPFR 26
>gi|397635517|gb|EJK71891.1| hypothetical protein THAOC_06625 [Thalassiosira oceanica]
Length = 389
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 31 PGMDKSMTAVCEFYVRGECNKDTMCPLR 58
P ++++ +C F+ +GECN+ T CP R
Sbjct: 160 PRYERNLPKLCSFFAKGECNRGTQCPFR 187
>gi|224001676|ref|XP_002290510.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973932|gb|EED92262.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 301
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 31 PGMDKSMTAVCEFYVRGECNKDTMCPLR 58
P ++++ +C F+ +GECN+ ++CP R
Sbjct: 157 PRYERNLPKLCSFFAKGECNRGSLCPFR 184
>gi|397478491|ref|XP_003810578.1| PREDICTED: putative cleavage and polyadenylation specificity
factor subunit 4-like protein [Pan paniscus]
Length = 147
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 33 MDKSMTAVCEFYVRGECNKDTMCPLR 58
MDKS +AVC F+ +G C K +CP R
Sbjct: 1 MDKSASAVCNFFTKGLCEKGKLCPFR 26
>gi|116205852|ref|XP_001228735.1| hypothetical protein CHGG_02219 [Chaetomium globosum CBS 148.51]
gi|88182816|gb|EAQ90284.1| hypothetical protein CHGG_02219 [Chaetomium globosum CBS 148.51]
Length = 916
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 25 ILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLRPGLATPVLGAS 69
+ P+P + A C+F+ RG C T+CP A+P G++
Sbjct: 107 VQPTPQRPTNSRALAACKFFARGACKNGTVCPFAHPTASPAAGSN 151
>gi|71986234|ref|NP_001023126.1| Protein CPSF-4 [Caenorhabditis elegans]
gi|33589141|emb|CAE45045.1| Protein CPSF-4 [Caenorhabditis elegans]
Length = 302
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLRP 59
M LV+N+ D+E AL NQ + +PF +D+S AVC NK MCP P
Sbjct: 15 MTDLVSNITAPMTDVEEALFNQRGMKEAPFRDLDRSGKAVC------RKNKLKMCPFGP 67
>gi|297273512|ref|XP_001086803.2| PREDICTED: putative cleavage and polyadenylation specificity
factor subunit 4-like protein-like [Macaca mulatta]
Length = 162
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSM----------TAVCEFYVRGECN 50
M+ ++A +E F E +E Q PFPGMD+ + VC+ ++RG C
Sbjct: 1 MQEVIAGLERFTFAFEEDVEMQKGTGLLPFPGMDRKLCPFRHDRGEKMVVCKHWLRGLCK 60
Query: 51 KDTMCPL 57
K C
Sbjct: 61 KGDHCKF 67
>gi|345310735|ref|XP_001521535.2| PREDICTED: cleavage and polyadenylation specificity factor
subunit 4-like [Ornithorhynchus anatinus]
Length = 241
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A VE I FD+E +E Q PF GMD S +C F G +CP R
Sbjct: 1 MQELIAGVEKIVFDLEADVEQQKGTGLLPFLGMDISQGPMCCFCPGG------LCPFR 52
>gi|341884151|gb|EGT40086.1| hypothetical protein CAEBREN_24449 [Caenorhabditis brenneri]
gi|341893362|gb|EGT49297.1| hypothetical protein CAEBREN_21927 [Caenorhabditis brenneri]
Length = 312
Score = 35.0 bits (79), Expect = 5.3, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M +V+++ D+E AL NQ + +PF +D+S AVC G C CPLR
Sbjct: 25 MTDIVSHITAPMTDVEEALFNQKGMKEAPFRDLDRSGRAVCRKNKIGCCPFGPTCPLR 82
>gi|393216915|gb|EJD02405.1| hypothetical protein FOMMEDRAFT_109756 [Fomitiporia mediterranea
MF3/22]
Length = 338
Score = 34.3 bits (77), Expect = 9.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 31 PGMDKSMTAVCEFYVRGECNKDTMCPLR 58
P ++ VC F+V+G+CN+ T CP R
Sbjct: 150 PYYKRNRPKVCSFFVKGDCNRGTECPYR 177
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,106,966,998
Number of Sequences: 23463169
Number of extensions: 34704794
Number of successful extensions: 58110
Number of sequences better than 100.0: 151
Number of HSP's better than 100.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 57815
Number of HSP's gapped (non-prelim): 295
length of query: 69
length of database: 8,064,228,071
effective HSP length: 41
effective length of query: 28
effective length of database: 7,102,238,142
effective search space: 198862667976
effective search space used: 198862667976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)