BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4297
(69 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5FVR7|CPSF4_RAT Cleavage and polyadenylation specificity factor subunit 4
OS=Rattus norvegicus GN=Cpsf4 PE=2 SV=1
Length = 243
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>sp|Q8BQZ5|CPSF4_MOUSE Cleavage and polyadenylation specificity factor subunit 4 OS=Mus
musculus GN=Cpsf4 PE=2 SV=1
Length = 211
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>sp|O19137|CPSF4_BOVIN Cleavage and polyadenylation specificity factor subunit 4 OS=Bos
taurus GN=CPSF4 PE=2 SV=1
Length = 243
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>sp|O95639|CPSF4_HUMAN Cleavage and polyadenylation specificity factor subunit 4 OS=Homo
sapiens GN=CPSF4 PE=1 SV=1
Length = 269
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity factor subunit 4
OS=Xenopus tropicalis GN=cpsf4 PE=2 SV=1
Length = 269
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/58 (53%), Positives = 42/58 (72%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A V++I+FD+E+A+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQELIACVDHIRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFR 58
>sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity factor subunit 4
OS=Xenopus laevis GN=cpsf4 PE=2 SV=1
Length = 269
Score = 68.9 bits (167), Expect = 9e-12, Method: Composition-based stats.
Identities = 30/58 (51%), Positives = 42/58 (72%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A V++++FD+E+A+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQELIACVDHLRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFR 58
>sp|A6NMK7|CPS4L_HUMAN Putative cleavage and polyadenylation specificity factor subunit
4-like protein OS=Homo sapiens GN=CPSF4L PE=2 SV=3
Length = 179
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A +E F E +E Q PF GMDKS +AVC F+ +G C K +CP R
Sbjct: 1 MQEVIAGLERFTFAFEKDVEMQKGTGLLPFQGMDKSASAVCNFFTKGLCEKGKLCPFR 58
>sp|Q5SNN4|C3H40_ORYSJ Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa
subsp. japonica GN=Os06g0170500 PE=2 SV=1
Length = 482
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 31 PGMDKSMTAVCEFYVRGECNKDTMCPLR 58
P ++ VC FYVRGEC + CP R
Sbjct: 153 PYYKRNRAHVCSFYVRGECTRGAECPYR 180
>sp|Q6Z358|C3H49_ORYSJ Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa
subsp. japonica GN=Os07g0281000 PE=2 SV=1
Length = 486
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 31 PGMDKSMTAVCEFYVRGECNKDTMCPLR 58
P ++ VC FYVRGEC + CP R
Sbjct: 153 PYYKRNRAHVCSFYVRGECTRGAECPYR 180
>sp|P0CR50|SLT11_CRYNJ Pre-mRNA-splicing factor SLT11 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SLT11 PE=3 SV=1
Length = 326
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 9 ENIKFDIEIALENQHDILPS---PFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
+ + +D E+A ++L + P ++ +C F+V+GEC + CP R
Sbjct: 126 DGLAYDSEVANRAGREMLKNLARTDPYYKRNRPHICSFFVKGECKRGAECPFR 178
>sp|P0CR51|SLT11_CRYNB Pre-mRNA-splicing factor SLT11 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=SLT11 PE=3
SV=1
Length = 326
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 9 ENIKFDIEIALENQHDILPS---PFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
+ + +D E+A ++L + P ++ +C F+V+GEC + CP R
Sbjct: 126 DGLAYDSEVANRAGREMLKNLARTDPYYKRNRPHICSFFVKGECKRGAECPFR 178
>sp|Q9LNV5|C3H4_ARATH Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis
thaliana GN=At1g07360 PE=2 SV=1
Length = 481
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 31 PGMDKSMTAVCEFYVRGECNKDTMCPLR 58
P ++ VC F++RGEC + CP R
Sbjct: 153 PYYKRNRAHVCSFFIRGECTRGAECPYR 180
>sp|Q9ZW36|C3H25_ARATH Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis
thaliana GN=At2g29580 PE=2 SV=1
Length = 483
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 31 PGMDKSMTAVCEFYVRGECNKDTMCPLR 58
P ++ +C F++RGEC + CP R
Sbjct: 153 PYYKRNRAHICSFFIRGECTRGDECPYR 180
>sp|Q7ZXB5|RBM22_XENLA Pre-mRNA-splicing factor RBM22 OS=Xenopus laevis GN=rbm22 PE=2 SV=1
Length = 417
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 31 PGMDKSMTAVCEFYVRGECNKDTMCPLR 58
P ++ +C F+V+GEC + CP R
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYR 182
>sp|Q6P616|RBM22_XENTR Pre-mRNA-splicing factor RBM22 OS=Xenopus tropicalis GN=rbm22 PE=2
SV=1
Length = 417
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 31 PGMDKSMTAVCEFYVRGECNKDTMCPLR 58
P ++ +C F+V+GEC + CP R
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYR 182
>sp|Q6NZZ9|RBM22_DANRE Pre-mRNA-splicing factor RBM22 OS=Danio rerio GN=rbm22 PE=2 SV=1
Length = 425
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 31 PGMDKSMTAVCEFYVRGECNKDTMCPLR 58
P ++ +C F+V+GEC + CP R
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYR 182
>sp|Q5ZM16|RBM22_CHICK Pre-mRNA-splicing factor RBM22 OS=Gallus gallus GN=RBM22 PE=2 SV=1
Length = 420
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 31 PGMDKSMTAVCEFYVRGECNKDTMCPLR 58
P ++ +C F+V+GEC + CP R
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYR 182
>sp|Q4V7D7|RBM22_RAT Pre-mRNA-splicing factor RBM22 OS=Rattus norvegicus GN=Rbm22 PE=2
SV=1
Length = 420
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 31 PGMDKSMTAVCEFYVRGECNKDTMCPLR 58
P ++ +C F+V+GEC + CP R
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYR 182
>sp|Q5RAY5|RBM22_PONAB Pre-mRNA-splicing factor RBM22 OS=Pongo abelii GN=RBM22 PE=2 SV=1
Length = 420
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 31 PGMDKSMTAVCEFYVRGECNKDTMCPLR 58
P ++ +C F+V+GEC + CP R
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYR 182
>sp|Q8BHS3|RBM22_MOUSE Pre-mRNA-splicing factor RBM22 OS=Mus musculus GN=Rbm22 PE=2 SV=1
Length = 420
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 31 PGMDKSMTAVCEFYVRGECNKDTMCPLR 58
P ++ +C F+V+GEC + CP R
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYR 182
>sp|Q4R4J1|RBM22_MACFA Pre-mRNA-splicing factor RBM22 OS=Macaca fascicularis GN=RBM22 PE=2
SV=1
Length = 420
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 31 PGMDKSMTAVCEFYVRGECNKDTMCPLR 58
P ++ +C F+V+GEC + CP R
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYR 182
>sp|Q9NW64|RBM22_HUMAN Pre-mRNA-splicing factor RBM22 OS=Homo sapiens GN=RBM22 PE=1 SV=1
Length = 420
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 31 PGMDKSMTAVCEFYVRGECNKDTMCPLR 58
P ++ +C F+V+GEC + CP R
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYR 182
>sp|Q3B7L8|RBM22_BOVIN Pre-mRNA-splicing factor RBM22 OS=Bos taurus GN=RBM22 PE=2 SV=1
Length = 420
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 31 PGMDKSMTAVCEFYVRGECNKDTMCPLR 58
P ++ +C F+V+GEC + CP R
Sbjct: 155 PYYKRNRPHICSFWVKGECKRGEECPYR 182
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,650,227
Number of Sequences: 539616
Number of extensions: 859809
Number of successful extensions: 1456
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1426
Number of HSP's gapped (non-prelim): 30
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)