Query psy4297
Match_columns 69
No_of_seqs 82 out of 84
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 21:56:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1040|consensus 98.9 1.1E-09 2.4E-14 83.4 3.7 67 1-67 8-79 (325)
2 KOG0153|consensus 98.5 5.6E-08 1.2E-12 75.9 1.8 37 24-62 149-185 (377)
3 smart00356 ZnF_C3H1 zinc finge 98.2 1.2E-06 2.6E-11 43.2 2.0 25 37-61 3-27 (27)
4 PF00642 zf-CCCH: Zinc finger 97.8 6.2E-06 1.3E-10 42.3 0.1 24 38-61 3-27 (27)
5 PF14608 zf-CCCH_2: Zinc finge 97.2 0.00017 3.6E-09 34.7 1.3 18 40-59 1-18 (19)
6 KOG1040|consensus 96.1 0.002 4.4E-08 49.4 0.8 27 35-61 74-100 (325)
7 PF10650 zf-C3H1: Putative zin 94.5 0.021 4.7E-07 29.1 1.2 22 39-61 1-23 (23)
8 KOG1763|consensus 94.2 0.016 3.5E-07 45.2 0.4 25 38-62 92-116 (343)
9 KOG1677|consensus 93.7 0.043 9.3E-07 40.0 1.9 31 35-65 174-205 (332)
10 KOG2202|consensus 92.4 0.057 1.2E-06 40.9 0.9 25 37-61 151-175 (260)
11 KOG2494|consensus 91.5 0.065 1.4E-06 41.8 0.4 25 37-61 36-61 (331)
12 COG5084 YTH1 Cleavage and poly 90.5 0.19 4.1E-06 38.3 2.1 34 28-61 92-127 (285)
13 KOG4791|consensus 89.0 0.15 3.2E-06 42.6 0.5 22 39-60 4-25 (667)
14 KOG2185|consensus 87.3 0.26 5.7E-06 40.1 1.0 22 39-60 141-162 (486)
15 COG5084 YTH1 Cleavage and poly 81.4 1.2 2.5E-05 34.1 2.1 27 38-64 134-161 (285)
16 KOG4791|consensus 80.1 0.63 1.4E-05 38.9 0.3 26 38-64 32-57 (667)
17 KOG1492|consensus 75.3 1.4 3.1E-05 34.2 1.0 29 38-66 206-235 (377)
18 COG5252 Uncharacterized conser 74.5 0.87 1.9E-05 35.1 -0.3 24 38-61 85-108 (299)
19 KOG1595|consensus 73.1 1.9 4.1E-05 35.7 1.3 26 38-63 236-261 (528)
20 KOG1763|consensus 71.4 1.2 2.7E-05 35.0 -0.1 45 15-66 140-195 (343)
21 PF13267 DUF4058: Protein of u 70.5 2.1 4.5E-05 32.4 0.9 9 27-35 2-10 (254)
22 KOG1039|consensus 69.0 2.1 4.5E-05 33.4 0.7 26 38-63 8-33 (344)
23 KOG2135|consensus 61.1 4.1 8.8E-05 33.8 1.0 27 35-61 209-236 (526)
24 PF02221 E1_DerP2_DerF2: ML do 57.7 3.4 7.3E-05 25.8 -0.0 36 19-59 54-90 (134)
25 KOG1492|consensus 50.3 8.8 0.00019 29.9 1.2 29 38-66 233-261 (377)
26 cd00916 Npc2_like Niemann-Pick 44.9 14 0.0003 24.0 1.3 25 24-58 56-80 (123)
27 cd00918 Der-p2_like Several gr 40.5 17 0.00037 23.9 1.3 24 23-58 53-76 (120)
28 KOG1677|consensus 38.7 16 0.00035 26.6 1.0 28 36-63 130-159 (332)
29 PHA02450 hypothetical protein 37.9 26 0.00056 20.9 1.6 24 46-69 26-49 (53)
30 KOG1039|consensus 37.8 17 0.00036 28.4 1.0 30 35-64 246-277 (344)
31 PF15181 SMRP1: Spermatid-spec 36.5 29 0.00064 26.5 2.1 32 27-61 190-225 (261)
32 COG5152 Uncharacterized conser 35.3 15 0.00032 27.9 0.4 26 38-63 141-167 (259)
33 KOG4063|consensus 34.3 25 0.00055 25.1 1.4 30 24-59 83-112 (158)
34 PF09888 DUF2115: Uncharacteri 27.3 49 0.0011 23.0 1.9 32 28-59 123-158 (163)
35 KOG3064|consensus 26.2 31 0.00067 26.9 0.8 16 43-59 32-47 (303)
36 KOG1813|consensus 24.1 27 0.00059 27.4 0.1 26 38-63 186-212 (313)
37 KOG0303|consensus 23.9 26 0.00057 28.8 0.0 28 19-46 309-336 (472)
38 PRK01022 hypothetical protein; 23.8 59 0.0013 22.8 1.8 32 28-59 125-160 (167)
39 cd07322 PriL_PriS_Eukaryotic E 23.1 35 0.00075 26.8 0.6 26 37-63 302-331 (390)
40 COG5063 CTH1 CCCH-type Zn-fing 22.8 45 0.00098 26.5 1.1 26 39-64 275-301 (351)
41 smart00400 ZnF_CHCC zinc finge 22.3 56 0.0012 18.2 1.2 11 54-64 4-14 (55)
42 PF15257 DUF4590: Domain of un 22.3 43 0.00094 22.9 0.8 24 41-64 53-78 (116)
43 PF12268 DUF3612: Protein of u 21.0 46 0.00099 24.2 0.8 9 49-57 161-169 (178)
44 KOG4393|consensus 20.4 69 0.0015 25.0 1.7 33 11-43 32-64 (295)
45 PF11581 Argos: Antagonist of 20.1 40 0.00087 23.4 0.3 14 48-61 112-125 (129)
No 1
>KOG1040|consensus
Probab=98.90 E-value=1.1e-09 Score=83.41 Aligned_cols=67 Identities=24% Similarity=0.383 Sum_probs=62.6
Q ss_pred CcccccccCCcchhHHHHHHhhcCCCCCCCCCCCcccccccccccc--ccCCCCCCCCCCCCC---CCcccc
Q psy4297 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVR--GECNKDTMCPLRPGL---ATPVLG 67 (69)
Q Consensus 1 M~~~ia~v~~~~Fd~E~~le~Q~G~~~lPF~gmDks~a~vC~ff~~--G~C~kG~~CPfRH~~---gek~Vv 67 (69)
|+....+.+...|++|..+++|.|+-+.||+++|+++.++|.|+.+ -.|.+|+.||.+|.. ++++||
T Consensus 8 ~~~p~~~~~~~~~~~e~~~~~e~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 79 (325)
T KOG1040|consen 8 TELPMLDDDSLKTDFEKSLDREPGASLAPFRVRDESGRATCEFNESREKPCERGPICPKSHNDVSDSRGKVV 79 (325)
T ss_pred cccCcccccccccccchhhhhcccccccccccccccccchhcccccCCCCccCCCCCccccCCccccCCcee
Confidence 6788899999999999999999999999999999999999999988 789999999999999 778776
No 2
>KOG0153|consensus
Probab=98.48 E-value=5.6e-08 Score=75.87 Aligned_cols=37 Identities=27% Similarity=0.723 Sum_probs=33.2
Q ss_pred CCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCC
Q psy4297 24 DILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLRPGLA 62 (69)
Q Consensus 24 G~~~lPF~gmDks~a~vC~ff~~G~C~kG~~CPfRH~~g 62 (69)
-++..|+++ +|.+.||+||++|+|.||++|||||++.
T Consensus 149 l~rt~p~yk--rn~p~Icsf~v~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 149 LQRTTPYYK--RNRPHICSFFVKGECKRGAECPYRHEKP 185 (377)
T ss_pred HhccCcccc--CCCCccccceeeccccccccccccccCC
Confidence 345678886 8999999999999999999999999986
No 3
>smart00356 ZnF_C3H1 zinc finger.
Probab=98.17 E-value=1.2e-06 Score=43.19 Aligned_cols=25 Identities=32% Similarity=0.735 Sum_probs=22.1
Q ss_pred ccccccccccccCCCCCCCCCCCCC
Q psy4297 37 MTAVCEFYVRGECNKDTMCPLRPGL 61 (69)
Q Consensus 37 ~a~vC~ff~~G~C~kG~~CPfRH~~ 61 (69)
...+|.+|..|.|.+|..|+|.|..
T Consensus 3 k~~~C~~~~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 3 KTELCKFFKRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCcCcCccCCCCCCCCCcCCCCcC
Confidence 4568999988999999999999963
No 4
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.76 E-value=6.2e-06 Score=42.25 Aligned_cols=24 Identities=33% Similarity=0.852 Sum_probs=18.6
Q ss_pred ccccccccc-ccCCCCCCCCCCCCC
Q psy4297 38 TAVCEFYVR-GECNKDTMCPLRPGL 61 (69)
Q Consensus 38 a~vC~ff~~-G~C~kG~~CPfRH~~ 61 (69)
..+|.+|.+ |.|.+|+.|+|.|..
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred cccChhhccCCccCCCCCcCccCCC
Confidence 478999988 999999999999963
No 5
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=97.24 E-value=0.00017 Score=34.74 Aligned_cols=18 Identities=28% Similarity=0.794 Sum_probs=16.1
Q ss_pred cccccccccCCCCCCCCCCC
Q psy4297 40 VCEFYVRGECNKDTMCPLRP 59 (69)
Q Consensus 40 vC~ff~~G~C~kG~~CPfRH 59 (69)
.|.||.. |+.|+.|||+|
T Consensus 1 ~Ck~~~~--C~~~~~C~f~H 18 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSH 18 (19)
T ss_pred CCcCcCC--CCCCCcCccCC
Confidence 4888877 99999999999
No 6
>KOG1040|consensus
Probab=96.11 E-value=0.002 Score=49.43 Aligned_cols=27 Identities=26% Similarity=0.624 Sum_probs=25.1
Q ss_pred ccccccccccccccCCCCCCCCCCCCC
Q psy4297 35 KSMTAVCEFYVRGECNKDTMCPLRPGL 61 (69)
Q Consensus 35 ks~a~vC~ff~~G~C~kG~~CPfRH~~ 61 (69)
+++.-||.+|++|.|.+|..|.|-|+-
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe~ 100 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHEY 100 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhhh
Confidence 778899999999999999999999975
No 7
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=94.49 E-value=0.021 Score=29.12 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=18.8
Q ss_pred ccccccccc-cCCCCCCCCCCCCC
Q psy4297 39 AVCEFYVRG-ECNKDTMCPLRPGL 61 (69)
Q Consensus 39 ~vC~ff~~G-~C~kG~~CPfRH~~ 61 (69)
+.|.|.+.| .|+. ..|+|.|.+
T Consensus 1 ~lC~yEl~Gg~Cnd-~~C~~QHfr 23 (23)
T PF10650_consen 1 PLCPYELTGGVCND-PDCEFQHFR 23 (23)
T ss_pred CCCccccCCCeeCC-CCCCccccC
Confidence 469999998 9985 899999974
No 8
>KOG1763|consensus
Probab=94.15 E-value=0.016 Score=45.22 Aligned_cols=25 Identities=36% Similarity=0.891 Sum_probs=22.9
Q ss_pred cccccccccccCCCCCCCCCCCCCC
Q psy4297 38 TAVCEFYVRGECNKDTMCPLRPGLA 62 (69)
Q Consensus 38 a~vC~ff~~G~C~kG~~CPfRH~~g 62 (69)
+-||-||.+|+|++|.-|-|.|...
T Consensus 92 SvvCafFk~g~C~KG~kCKFsHdl~ 116 (343)
T KOG1763|consen 92 SVVCAFFKQGTCTKGDKCKFSHDLA 116 (343)
T ss_pred HHHHHHHhccCCCCCCcccccchHH
Confidence 5799999999999999999999763
No 9
>KOG1677|consensus
Probab=93.69 E-value=0.043 Score=40.01 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=27.6
Q ss_pred cccccccccccc-ccCCCCCCCCCCCCCCCcc
Q psy4297 35 KSMTAVCEFYVR-GECNKDTMCPLRPGLATPV 65 (69)
Q Consensus 35 ks~a~vC~ff~~-G~C~kG~~CPfRH~~gek~ 65 (69)
|-+...|..|.+ |.|..|..|-|.|...+.+
T Consensus 174 ~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~ 205 (332)
T KOG1677|consen 174 KYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR 205 (332)
T ss_pred CCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence 677899999998 9999999999999987654
No 10
>KOG2202|consensus
Probab=92.36 E-value=0.057 Score=40.94 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=22.9
Q ss_pred ccccccccccccCCCCCCCCCCCCC
Q psy4297 37 MTAVCEFYVRGECNKDTMCPLRPGL 61 (69)
Q Consensus 37 ~a~vC~ff~~G~C~kG~~CPfRH~~ 61 (69)
.-++|.+|.++.|++|..|-|-|..
T Consensus 151 rea~C~~~e~~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 151 REAICGQFERTECSRGGACNFMHVK 175 (260)
T ss_pred hhhhhcccccccCCCCCcCcchhhh
Confidence 3589999999999999999999975
No 11
>KOG2494|consensus
Probab=91.51 E-value=0.065 Score=41.82 Aligned_cols=25 Identities=20% Similarity=0.563 Sum_probs=22.5
Q ss_pred ccccccccccccCCCCCC-CCCCCCC
Q psy4297 37 MTAVCEFYVRGECNKDTM-CPLRPGL 61 (69)
Q Consensus 37 ~a~vC~ff~~G~C~kG~~-CPfRH~~ 61 (69)
.-.||+=|.||.|+||+. |-|+|=.
T Consensus 36 ~~eVCReF~rn~C~R~d~~CkfaHP~ 61 (331)
T KOG2494|consen 36 TLEVCREFLRNTCSRGDRECKFAHPP 61 (331)
T ss_pred HHHHHHHHHhccccCCCccccccCCC
Confidence 358999999999999999 9999954
No 12
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=90.52 E-value=0.19 Score=38.29 Aligned_cols=34 Identities=26% Similarity=0.629 Sum_probs=25.8
Q ss_pred CCCCCCC--ccccccccccccccCCCCCCCCCCCCC
Q psy4297 28 SPFPGMD--KSMTAVCEFYVRGECNKDTMCPLRPGL 61 (69)
Q Consensus 28 lPF~gmD--ks~a~vC~ff~~G~C~kG~~CPfRH~~ 61 (69)
.|+.+++ -+..-+|.||..|.|.+|..|+|-|..
T Consensus 92 ~~~~~~~~~~~s~V~c~~~~~g~c~s~~~c~~lh~~ 127 (285)
T COG5084 92 TPNNHVNPVLSSSVVCKFFLRGLCKSGFSCEFLHEY 127 (285)
T ss_pred CCccccCccccCCcccchhccccCcCCCccccccCC
Confidence 3555555 356678999999999999999888864
No 13
>KOG4791|consensus
Probab=88.97 E-value=0.15 Score=42.57 Aligned_cols=22 Identities=32% Similarity=0.810 Sum_probs=16.2
Q ss_pred ccccccccccCCCCCCCCCCCC
Q psy4297 39 AVCEFYVRGECNKDTMCPLRPG 60 (69)
Q Consensus 39 ~vC~ff~~G~C~kG~~CPfRH~ 60 (69)
..|.||....|.++..|||||.
T Consensus 4 ~dcyff~ys~cKk~d~c~~rh~ 25 (667)
T KOG4791|consen 4 EDCYFFFYSTCKKGDSCPFRHC 25 (667)
T ss_pred ccchhhhhhhhhccCcCcchhh
Confidence 4577777777777777777775
No 14
>KOG2185|consensus
Probab=87.32 E-value=0.26 Score=40.10 Aligned_cols=22 Identities=27% Similarity=0.848 Sum_probs=20.6
Q ss_pred ccccccccccCCCCCCCCCCCC
Q psy4297 39 AVCEFYVRGECNKDTMCPLRPG 60 (69)
Q Consensus 39 ~vC~ff~~G~C~kG~~CPfRH~ 60 (69)
..|.||+.|.|..|..|-|.|-
T Consensus 141 kpC~ffLeg~CRF~enCRfSHG 162 (486)
T KOG2185|consen 141 KPCKFFLEGRCRFGENCRFSHG 162 (486)
T ss_pred ccchHhhccccccCcccccccC
Confidence 5799999999999999999995
No 15
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=81.35 E-value=1.2 Score=34.09 Aligned_cols=27 Identities=15% Similarity=0.433 Sum_probs=21.4
Q ss_pred ccccccc-ccccCCCCCCCCCCCCCCCc
Q psy4297 38 TAVCEFY-VRGECNKDTMCPLRPGLATP 64 (69)
Q Consensus 38 a~vC~ff-~~G~C~kG~~CPfRH~~gek 64 (69)
..-|.+| ..|.|..|..|++-|+..++
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~dp~~ 161 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHIDPDS 161 (285)
T ss_pred CCCcccccccceeccCCCCCccccCccc
Confidence 6778888 77888888888888886443
No 16
>KOG4791|consensus
Probab=80.11 E-value=0.63 Score=38.94 Aligned_cols=26 Identities=23% Similarity=0.664 Sum_probs=19.4
Q ss_pred cccccccccccCCCCCCCCCCCCCCCc
Q psy4297 38 TAVCEFYVRGECNKDTMCPLRPGLATP 64 (69)
Q Consensus 38 a~vC~ff~~G~C~kG~~CPfRH~~gek 64 (69)
--+|.+|+.+.|-+ ..|||||..-++
T Consensus 32 ~t~C~~w~~~~~C~-k~C~YRHSe~~~ 57 (667)
T KOG4791|consen 32 ETVCTLWQEGRCCR-KVCRYRHSEIDK 57 (667)
T ss_pred cchhhhhhhcCccc-ccccchhhHHhh
Confidence 46899999986554 399999975443
No 17
>KOG1492|consensus
Probab=75.28 E-value=1.4 Score=34.17 Aligned_cols=29 Identities=21% Similarity=0.571 Sum_probs=23.5
Q ss_pred ccccccccc-ccCCCCCCCCCCCCCCCccc
Q psy4297 38 TAVCEFYVR-GECNKDTMCPLRPGLATPVL 66 (69)
Q Consensus 38 a~vC~ff~~-G~C~kG~~CPfRH~~gek~V 66 (69)
+--|++|.. |.|.+|..|-|-|+...|++
T Consensus 206 avycryynangicgkgaacrfvheptrkti 235 (377)
T KOG1492|consen 206 AVYCRYYNANGICGKGAACRFVHEPTRKTI 235 (377)
T ss_pred eeEEEEecCCCcccCCceeeeecccccccc
Confidence 445887754 88999999999999888876
No 18
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=74.53 E-value=0.87 Score=35.11 Aligned_cols=24 Identities=29% Similarity=0.764 Sum_probs=22.4
Q ss_pred cccccccccccCCCCCCCCCCCCC
Q psy4297 38 TAVCEFYVRGECNKDTMCPLRPGL 61 (69)
Q Consensus 38 a~vC~ff~~G~C~kG~~CPfRH~~ 61 (69)
+.||-.|.-+.|++|.-|-|-|..
T Consensus 85 ~~vcalF~~~~c~kg~~ckF~h~~ 108 (299)
T COG5252 85 TVVCALFLNKTCAKGDACKFAHGK 108 (299)
T ss_pred hHHHHHhccCccccCchhhhhcch
Confidence 589999999999999999999984
No 19
>KOG1595|consensus
Probab=73.12 E-value=1.9 Score=35.68 Aligned_cols=26 Identities=19% Similarity=0.630 Sum_probs=23.0
Q ss_pred cccccccccccCCCCCCCCCCCCCCC
Q psy4297 38 TAVCEFYVRGECNKDTMCPLRPGLAT 63 (69)
Q Consensus 38 a~vC~ff~~G~C~kG~~CPfRH~~ge 63 (69)
.-.|.=|.+|.|.+|..|-|-|...|
T Consensus 236 ~tpCPefrkG~C~rGD~CEyaHgvfE 261 (528)
T KOG1595|consen 236 STPCPEFRKGSCERGDSCEYAHGVFE 261 (528)
T ss_pred CccCcccccCCCCCCCccccccceeh
Confidence 46799999999999999999998765
No 20
>KOG1763|consensus
Probab=71.45 E-value=1.2 Score=35.00 Aligned_cols=45 Identities=24% Similarity=0.539 Sum_probs=30.2
Q ss_pred HHHHHHhhcCCCCCCCCCCCccccccccccccc----------cCCCCC-CCCCCCCCCCccc
Q psy4297 15 IEIALENQHDILPSPFPGMDKSMTAVCEFYVRG----------ECNKDT-MCPLRPGLATPVL 66 (69)
Q Consensus 15 ~E~~le~Q~G~~~lPF~gmDks~a~vC~ff~~G----------~C~kG~-~CPfRH~~gek~V 66 (69)
+|.-+...+| . |- ...--||.||+.. .|+.|. .|-|||...+-.|
T Consensus 140 l~~vv~~K~~-k--~k----~~tdiVCKfFLeAvE~~kYGWfW~CPnGg~~C~YrHaLP~GyV 195 (343)
T KOG1763|consen 140 LEEVVLKKHG-K--PK----PTTDIVCKFFLEAVENGKYGWFWECPNGGDKCIYRHALPEGYV 195 (343)
T ss_pred HHHHHHhhcc-C--CC----CchhHHHHHHHHHHhcCCccceeECCCCCCeeeeeecCCcchh
Confidence 4555566565 1 11 2344699999873 399888 7999998876544
No 21
>PF13267 DUF4058: Protein of unknown function (DUF4058)
Probab=70.53 E-value=2.1 Score=32.42 Aligned_cols=9 Identities=89% Similarity=1.737 Sum_probs=7.5
Q ss_pred CCCCCCCCc
Q psy4297 27 PSPFPGMDK 35 (69)
Q Consensus 27 ~lPF~gmDk 35 (69)
+.||||||-
T Consensus 2 ~sPFPGMdP 10 (254)
T PF13267_consen 2 PSPFPGMDP 10 (254)
T ss_pred cCCCCCCCc
Confidence 579999993
No 22
>KOG1039|consensus
Probab=68.98 E-value=2.1 Score=33.36 Aligned_cols=26 Identities=27% Similarity=0.869 Sum_probs=23.9
Q ss_pred cccccccccccCCCCCCCCCCCCCCC
Q psy4297 38 TAVCEFYVRGECNKDTMCPLRPGLAT 63 (69)
Q Consensus 38 a~vC~ff~~G~C~kG~~CPfRH~~ge 63 (69)
.-||.+|.+|.|.-|..|=|-|+..+
T Consensus 8 ~tic~~~~~g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 8 ETICKYYQKGNCKFGDLCRLSHSLPD 33 (344)
T ss_pred chhhhhcccccccccceeeeeccCch
Confidence 37999999999999999999999874
No 23
>KOG2135|consensus
Probab=61.07 E-value=4.1 Score=33.77 Aligned_cols=27 Identities=19% Similarity=0.512 Sum_probs=23.3
Q ss_pred cccccccccccc-ccCCCCCCCCCCCCC
Q psy4297 35 KSMTAVCEFYVR-GECNKDTMCPLRPGL 61 (69)
Q Consensus 35 ks~a~vC~ff~~-G~C~kG~~CPfRH~~ 61 (69)
++..+.|.||.+ |.|.+|.+||+-|..
T Consensus 209 ~~s~~r~k~fee~g~~~r~el~p~~hg~ 236 (526)
T KOG2135|consen 209 RNSENRRKFFEEFGVLERGELCPTHHGC 236 (526)
T ss_pred cccHHhhhhhHhhceeeecccccccccc
Confidence 567889999987 899999999988853
No 24
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=57.68 E-value=3.4 Score=25.83 Aligned_cols=36 Identities=25% Similarity=0.671 Sum_probs=24.4
Q ss_pred HHhhcCC-CCCCCCCCCccccccccccccccCCCCCCCCCCC
Q psy4297 19 LENQHDI-LPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLRP 59 (69)
Q Consensus 19 le~Q~G~-~~lPF~gmDks~a~vC~ff~~G~C~kG~~CPfRH 59 (69)
+.-+.+. -.+||+|++... ..|.+.. ..+..||.+-
T Consensus 54 v~~~~~g~~~ip~~g~~~~~-d~C~~~~----~~~~~CPi~~ 90 (134)
T PF02221_consen 54 VEAKVGGWIPIPFPGLCEYY-DLCDNLF----GNGLSCPIKA 90 (134)
T ss_dssp EEEEETTEEEEEEESSSCEE-EEEGTSC----CSSTTSTBTT
T ss_pred EEEEECCcEEEccccccCcc-chhhhcc----cccccCccCC
Confidence 3445564 788999988876 7777543 3456888764
No 25
>KOG1492|consensus
Probab=50.25 E-value=8.8 Score=29.88 Aligned_cols=29 Identities=28% Similarity=0.655 Sum_probs=23.1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCccc
Q psy4297 38 TAVCEFYVRGECNKDTMCPLRPGLATPVL 66 (69)
Q Consensus 38 a~vC~ff~~G~C~kG~~CPfRH~~gek~V 66 (69)
..+|.-|+.|.|++...|-+.|+..-|-+
T Consensus 233 kticpkflngrcnkaedcnlsheldprri 261 (377)
T KOG1492|consen 233 KTICPKFLNGRCNKAEDCNLSHELDPRRI 261 (377)
T ss_pred cccChHHhcCccCchhcCCcccccCcccc
Confidence 45788888899999999999888766544
No 26
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=44.95 E-value=14 Score=24.00 Aligned_cols=25 Identities=36% Similarity=0.681 Sum_probs=16.7
Q ss_pred CCCCCCCCCCCccccccccccccccCCCCCCCCCC
Q psy4297 24 DILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58 (69)
Q Consensus 24 G~~~lPF~gmDks~a~vC~ff~~G~C~kG~~CPfR 58 (69)
+--++||++.+ ...|... |..||.+
T Consensus 56 ~gv~ip~~~~~---~daC~~~-------~~~CPl~ 80 (123)
T cd00916 56 LGVPVPFPLPN---PDACKNL-------GTSCPLS 80 (123)
T ss_pred CCEEecCCCCC---CccccCC-------CCCCCCc
Confidence 34578999974 3456531 6899975
No 27
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=40.54 E-value=17 Score=23.88 Aligned_cols=24 Identities=29% Similarity=0.778 Sum_probs=15.7
Q ss_pred cCCCCCCCCCCCccccccccccccccCCCCCCCCCC
Q psy4297 23 HDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58 (69)
Q Consensus 23 ~G~~~lPF~gmDks~a~vC~ff~~G~C~kG~~CPfR 58 (69)
.+--++||+|.|+ ..|.+ -.||.+
T Consensus 53 ~~gv~iP~p~~~~---daC~~---------l~CPl~ 76 (120)
T cd00918 53 IDGLEIDVPGIET---DGCKY---------VKCPIK 76 (120)
T ss_pred ECCEEcCCCCCCC---CCccc---------EeCCCc
Confidence 3445689999873 34542 379986
No 28
>KOG1677|consensus
Probab=38.69 E-value=16 Score=26.60 Aligned_cols=28 Identities=25% Similarity=0.635 Sum_probs=23.2
Q ss_pred ccccccccccc-ccCCC-CCCCCCCCCCCC
Q psy4297 36 SMTAVCEFYVR-GECNK-DTMCPLRPGLAT 63 (69)
Q Consensus 36 s~a~vC~ff~~-G~C~k-G~~CPfRH~~ge 63 (69)
.+.+.|.+|.+ |.|.. |..|=|-|-..+
T Consensus 130 ~kt~lc~~~~~~g~c~y~ge~crfah~~~e 159 (332)
T KOG1677|consen 130 YKTPLCRSFRKSGTCKYRGEQCRFAHGLEE 159 (332)
T ss_pred ccCCcceeeecCccccccCchhhhcCCccc
Confidence 44689999987 89998 999999886654
No 29
>PHA02450 hypothetical protein
Probab=37.86 E-value=26 Score=20.93 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.3
Q ss_pred cccCCCCCCCCCCCCCCCcccccC
Q psy4297 46 RGECNKDTMCPLRPGLATPVLGAS 69 (69)
Q Consensus 46 ~G~C~kG~~CPfRH~~gek~Vv~~ 69 (69)
.|.-..|..=||-.+.|+..+|||
T Consensus 26 ~g~~epg~fdpfcpdhg~~~~vas 49 (53)
T PHA02450 26 GGHAEPGQFDPFCPDHGNPEYVAS 49 (53)
T ss_pred CCcCCCCccCCCCCCCCChhheee
Confidence 367788999999999999999997
No 30
>KOG1039|consensus
Probab=37.83 E-value=17 Score=28.43 Aligned_cols=30 Identities=17% Similarity=0.473 Sum_probs=24.7
Q ss_pred cccccccccccc--ccCCCCCCCCCCCCCCCc
Q psy4297 35 KSMTAVCEFYVR--GECNKDTMCPLRPGLATP 64 (69)
Q Consensus 35 ks~a~vC~ff~~--G~C~kG~~CPfRH~~gek 64 (69)
+.++..|.+|.+ |.|+.|+.|.|+|..-+.
T Consensus 246 ~~s~~~c~yf~~~~g~cPf~s~~~y~h~~~~~ 277 (344)
T KOG1039|consen 246 EMSAKDCKYFSQGLGSCPFGSKCFYKHLLPSG 277 (344)
T ss_pred HhhccchhhhcCCCCCCCCCCccccccccccc
Confidence 456788999988 679999999999987543
No 31
>PF15181 SMRP1: Spermatid-specific manchette-related protein 1
Probab=36.54 E-value=29 Score=26.49 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=24.7
Q ss_pred CCCCCCCCc--cccccccccccc--cCCCCCCCCCCCCC
Q psy4297 27 PSPFPGMDK--SMTAVCEFYVRG--ECNKDTMCPLRPGL 61 (69)
Q Consensus 27 ~lPF~gmDk--s~a~vC~ff~~G--~C~kG~~CPfRH~~ 61 (69)
-|||+|++- ||.+.|. +| .|.-|.-|-=||.+
T Consensus 190 RlPfqGY~S~CSGRHYCL---RGMDy~~~gaP~teRrl~ 225 (261)
T PF15181_consen 190 RLPFQGYESPCSGRHYCL---RGMDYYVTGAPCTERRLR 225 (261)
T ss_pred cCCcccccCCcCcceeee---ccccccccCCCCcccccc
Confidence 479999995 8889997 54 47888888777754
No 32
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=35.34 E-value=15 Score=27.92 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=22.6
Q ss_pred ccccccccc-ccCCCCCCCCCCCCCCC
Q psy4297 38 TAVCEFYVR-GECNKDTMCPLRPGLAT 63 (69)
Q Consensus 38 a~vC~ff~~-G~C~kG~~CPfRH~~ge 63 (69)
+.||.=|.. |.|.-|..|-|-|.+.|
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~D 167 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRSD 167 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhhh
Confidence 689987755 99999999999999864
No 33
>KOG4063|consensus
Probab=34.31 E-value=25 Score=25.13 Aligned_cols=30 Identities=33% Similarity=0.651 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCccccccccccccccCCCCCCCCCCC
Q psy4297 24 DILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLRP 59 (69)
Q Consensus 24 G~~~lPF~gmDks~a~vC~ff~~G~C~kG~~CPfRH 59 (69)
|.-++|||+.. +.+.+|..-. .|..||+.-
T Consensus 83 g~v~vPfpl~~-~dacv~~~l~-----~gv~CPl~a 112 (158)
T KOG4063|consen 83 GSVPVPFPLPA-SDACVCGNLL-----HGVYCPLSA 112 (158)
T ss_pred ccEeecCCCCC-Cccccccccc-----ccccCcccC
Confidence 55788999865 7777887443 688899754
No 34
>PF09888 DUF2115: Uncharacterized protein conserved in archaea (DUF2115); InterPro: IPR019215 This entry represents various hypothetical archaeal proteins, has no known function.
Probab=27.32 E-value=49 Score=23.02 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=22.7
Q ss_pred CCCCCCC----ccccccccccccccCCCCCCCCCCC
Q psy4297 28 SPFPGMD----KSMTAVCEFYVRGECNKDTMCPLRP 59 (69)
Q Consensus 28 lPF~gmD----ks~a~vC~ff~~G~C~kG~~CPfRH 59 (69)
+||||-+ ++|.--|.--.+..-...+.|+|--
T Consensus 123 ~~FPGG~~V~~~~g~YYCPVKdkq~d~~~aLC~FC~ 158 (163)
T PF09888_consen 123 MPFPGGFKVEEKNGNYYCPVKDKQKDVPFALCNFCP 158 (163)
T ss_pred CCCCCCeEEEEECCEEeCccchhhcCCCCccCCCcC
Confidence 4999988 4666677766666666777787743
No 35
>KOG3064|consensus
Probab=26.19 E-value=31 Score=26.92 Aligned_cols=16 Identities=44% Similarity=1.049 Sum_probs=13.0
Q ss_pred ccccccCCCCCCCCCCC
Q psy4297 43 FYVRGECNKDTMCPLRP 59 (69)
Q Consensus 43 ff~~G~C~kG~~CPfRH 59 (69)
+.+.|.|+| ..||+-.
T Consensus 32 yNvTGLCnR-~SCPLAN 47 (303)
T KOG3064|consen 32 YNVTGLCNR-SSCPLAN 47 (303)
T ss_pred cccceeecc-ccCcCcc
Confidence 567899998 8999854
No 36
>KOG1813|consensus
Probab=24.15 E-value=27 Score=27.40 Aligned_cols=26 Identities=19% Similarity=0.496 Sum_probs=22.0
Q ss_pred ccccccccc-ccCCCCCCCCCCCCCCC
Q psy4297 38 TAVCEFYVR-GECNKDTMCPLRPGLAT 63 (69)
Q Consensus 38 a~vC~ff~~-G~C~kG~~CPfRH~~ge 63 (69)
+-||.=|.. |.|..|..|-|-|.+.|
T Consensus 186 pDicKdykeTgycg~gdSckFlh~r~D 212 (313)
T KOG1813|consen 186 PDICKDYKETGYCGYGDSCKFLHDRSD 212 (313)
T ss_pred chhhhhhHhhCcccccchhhhhhhhhh
Confidence 568887755 99999999999999875
No 37
>KOG0303|consensus
Probab=23.89 E-value=26 Score=28.80 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=25.2
Q ss_pred HHhhcCCCCCCCCCCCcccccccccccc
Q psy4297 19 LENQHDILPSPFPGMDKSMTAVCEFYVR 46 (69)
Q Consensus 19 le~Q~G~~~lPF~gmDks~a~vC~ff~~ 46 (69)
-|-|+|.+.+|-.|+|-|...|-.||.-
T Consensus 309 ~epQRG~g~mPKRGl~Vs~cEI~rfyKl 336 (472)
T KOG0303|consen 309 KEPQRGMGFMPKRGLDVSKCEIARFYKL 336 (472)
T ss_pred CCccccccccccccccchHHHHHHHHHh
Confidence 4789999999999999999999999854
No 38
>PRK01022 hypothetical protein; Provisional
Probab=23.78 E-value=59 Score=22.83 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=23.2
Q ss_pred CCCCCCC----ccccccccccccccCCCCCCCCCCC
Q psy4297 28 SPFPGMD----KSMTAVCEFYVRGECNKDTMCPLRP 59 (69)
Q Consensus 28 lPF~gmD----ks~a~vC~ff~~G~C~kG~~CPfRH 59 (69)
+||||.+ ++|.--|.--.+..-+..+.|+|--
T Consensus 125 ~~FPGG~~V~~~~g~yYCPVkdkq~d~~~slC~fC~ 160 (167)
T PRK01022 125 TPFPGGFKVEEKNGVYYCPVKDKQKDVDFSLCEFCP 160 (167)
T ss_pred CCCCCCeEEEeECCEEeCccchhhcCCCccccCCcc
Confidence 4999966 5777777776666666778887754
No 39
>cd07322 PriL_PriS_Eukaryotic Eukaryotic core primase: Large subunit, PriL. Primases synthesize the RNA primers required for DNA replication. Primases are grouped into two classes, bacteria/bacteriophage and archaeal/eukaryotic. The proteins in the two classes differ in structure and the replication apparatus components. Archaeal/eukaryotic core primase is a heterodimeric enzyme consisting of a small catalytic subunit (PriS) and a large subunit (PriL). In eukaryotic organisms, a heterotetrameric enzyme formed by DNA polymerase alpha, the B subunit and two primase subunits has primase activity. Although the catalytic activity resides within PriS, the PriL subunit is essential for primase function as disruption of the PriL gene in yeast is lethal. PriL is composed of two structural domains. Several functions have been proposed for PriL such as stabilization of the PriS, involvement in synthesis initiation, improvement of primase processivity, determination of product size and transfer of
Probab=23.12 E-value=35 Score=26.75 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=15.5
Q ss_pred ccccccccccccCCCC----CCCCCCCCCCC
Q psy4297 37 MTAVCEFYVRGECNKD----TMCPLRPGLAT 63 (69)
Q Consensus 37 ~a~vC~ff~~G~C~kG----~~CPfRH~~ge 63 (69)
.+..|.--..+. ..| .-|||||-.-+
T Consensus 302 ~p~sC~~i~~~~-~p~~g~~HGCPfr~~~~~ 331 (390)
T cd07322 302 TPYSCSKIISQN-PPGPGDCHGCPFRHFDSD 331 (390)
T ss_pred CCCCHHHHHcCC-CCCCCCcCCCCCCCCCHH
Confidence 355676555443 222 57999997644
No 40
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=22.81 E-value=45 Score=26.55 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=19.8
Q ss_pred cccccccc-ccCCCCCCCCCCCCCCCc
Q psy4297 39 AVCEFYVR-GECNKDTMCPLRPGLATP 64 (69)
Q Consensus 39 ~vC~ff~~-G~C~kG~~CPfRH~~gek 64 (69)
.-|.=|.+ |.|.-|.-|+|.|-.-++
T Consensus 275 ePcinwe~sGyc~yg~Rc~F~hgd~~~ 301 (351)
T COG5063 275 EPCINWEKSGYCPYGLRCCFKHGDDSD 301 (351)
T ss_pred CCccchhhcccCccccccccccCChhh
Confidence 44655655 899999999999976443
No 41
>smart00400 ZnF_CHCC zinc finger.
Probab=22.29 E-value=56 Score=18.18 Aligned_cols=11 Identities=18% Similarity=0.640 Sum_probs=7.1
Q ss_pred CCCCCCCCCCc
Q psy4297 54 MCPLRPGLATP 64 (69)
Q Consensus 54 ~CPfRH~~gek 64 (69)
.|||+.++.-.
T Consensus 4 ~cPfh~d~~pS 14 (55)
T smart00400 4 LCPFHGEKTPS 14 (55)
T ss_pred cCcCCCCCCCC
Confidence 58887765443
No 42
>PF15257 DUF4590: Domain of unknown function (DUF4590)
Probab=22.27 E-value=43 Score=22.91 Aligned_cols=24 Identities=13% Similarity=0.335 Sum_probs=18.3
Q ss_pred ccccccc--cCCCCCCCCCCCCCCCc
Q psy4297 41 CEFYVRG--ECNKDTMCPLRPGLATP 64 (69)
Q Consensus 41 C~ff~~G--~C~kG~~CPfRH~~gek 64 (69)
=+||+.| .+..-+-|.|||-.|.+
T Consensus 53 ltf~~nG~q~~RlSsCCEYkh~~Gsr 78 (116)
T PF15257_consen 53 LTFFLNGMQVDRLSSCCEYKHRKGSR 78 (116)
T ss_pred EEEEEccEEeeehhhcccccccCccc
Confidence 4677776 37777788999998865
No 43
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=20.97 E-value=46 Score=24.19 Aligned_cols=9 Identities=33% Similarity=1.268 Sum_probs=6.6
Q ss_pred CCCCCCCCC
Q psy4297 49 CNKDTMCPL 57 (69)
Q Consensus 49 C~kG~~CPf 57 (69)
|+||+.||=
T Consensus 161 CsRGa~CPR 169 (178)
T PF12268_consen 161 CSRGAVCPR 169 (178)
T ss_pred ecCCCCCCC
Confidence 677888874
No 44
>KOG4393|consensus
Probab=20.40 E-value=69 Score=25.02 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=27.5
Q ss_pred cchhHHHHHHhhcCCCCCCCCCCCccccccccc
Q psy4297 11 IKFDIEIALENQHDILPSPFPGMDKSMTAVCEF 43 (69)
Q Consensus 11 ~~Fd~E~~le~Q~G~~~lPF~gmDks~a~vC~f 43 (69)
|.-=+|++.++|.+...|-|.+|.+..|.|=.+
T Consensus 32 Iq~~leea~eeqt~l~~l~l~~ssrtDa~Vha~ 64 (295)
T KOG4393|consen 32 IQGFLEEASEEQTGLDRLDLESSSRTDAGVHAY 64 (295)
T ss_pred hhhhhhhhHHhhcCCcceeecccCCCchhhhee
Confidence 556689999999999999999999888776443
No 45
>PF11581 Argos: Antagonist of EGFR signalling, Argos; InterPro: IPR021633 Argos is a natural secreted antagonist of EGFR signalling which functions by binding growth factor ligands that activate EGFR by forming a clamp like structure using three disulphide-bonded beta-sheet domains []. ; PDB: 3CGU_A 3C9A_A.
Probab=20.09 E-value=40 Score=23.41 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=8.7
Q ss_pred cCCCCCCCCCCCCC
Q psy4297 48 ECNKDTMCPLRPGL 61 (69)
Q Consensus 48 ~C~kG~~CPfRH~~ 61 (69)
.|.+|..||=+|..
T Consensus 112 qCP~~hrCP~hHt~ 125 (129)
T PF11581_consen 112 QCPKGHRCPSHHTD 125 (129)
T ss_dssp B-STTEE--SSTTS
T ss_pred cCCCCCcCCcccCC
Confidence 39999999977764
Done!