Query psy4297
Match_columns 69
No_of_seqs 82 out of 84
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 21:56:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1l_A PRE-mRNA-splicing facto 98.3 1.7E-07 5.9E-12 66.8 1.1 29 35-63 67-95 (240)
2 3d2q_A Muscleblind-like protei 98.1 8.7E-07 3E-11 52.6 1.8 24 38-61 6-30 (70)
3 2rhk_C Cleavage and polyadenyl 98.1 1.3E-06 4.3E-11 52.5 2.0 28 35-62 13-40 (72)
4 2d9n_A Cleavage and polyadenyl 98.0 2.3E-06 7.9E-11 51.4 2.7 27 37-63 9-35 (77)
5 2e5s_A Otthump00000018578; ZF- 97.8 4.7E-06 1.6E-10 52.8 0.8 36 27-62 9-45 (98)
6 2cqe_A KIAA1064 protein; CCCH 97.8 1.1E-05 3.7E-10 50.9 2.3 24 37-60 12-35 (98)
7 1m9o_A Tristetraproline; Cys3H 97.5 9.9E-05 3.4E-09 43.1 3.4 29 35-63 9-38 (77)
8 2rhk_C Cleavage and polyadenyl 97.4 4.9E-05 1.7E-09 45.5 1.9 28 36-64 42-70 (72)
9 2d9n_A Cleavage and polyadenyl 97.4 6.3E-05 2.1E-09 45.1 2.2 26 37-63 37-63 (77)
10 3d2q_A Muscleblind-like protei 97.4 5.4E-05 1.8E-09 44.7 1.7 26 35-61 39-64 (70)
11 3d2n_A Muscleblind-like protei 97.3 0.0001 3.5E-09 45.5 2.2 25 38-62 9-34 (83)
12 2rpp_A Muscleblind-like protei 97.2 0.00021 7.2E-09 44.8 3.1 26 37-62 16-42 (89)
13 2e5s_A Otthump00000018578; ZF- 97.2 0.00011 3.7E-09 46.4 1.5 27 35-62 53-79 (98)
14 3d2n_A Muscleblind-like protei 97.0 0.00022 7.5E-09 44.0 1.2 26 35-61 40-65 (83)
15 2cqe_A KIAA1064 protein; CCCH 96.6 0.00072 2.5E-08 42.4 1.7 25 38-62 36-61 (98)
16 1m9o_A Tristetraproline; Cys3H 96.3 0.00071 2.4E-08 39.4 0.0 27 37-63 49-76 (77)
17 2rpp_A Muscleblind-like protei 95.9 0.0029 1E-07 39.5 1.6 25 36-61 49-73 (89)
18 2fc6_A Nuclear, target of EGR1 95.7 0.0043 1.5E-07 36.1 1.6 26 36-61 18-44 (50)
19 2d9m_A Zinc finger CCCH-type d 93.0 0.031 1.1E-06 34.0 1.1 25 38-62 20-44 (69)
20 2lhn_A Nuclear polyadenylated 84.9 0.19 6.4E-06 31.0 0.0 22 37-61 8-29 (80)
21 3u9g_A Zinc finger CCCH-type a 67.4 1.9 6.5E-05 31.2 1.2 25 38-63 175-199 (229)
22 3u9g_A Zinc finger CCCH-type a 55.3 4.6 0.00016 29.1 1.4 24 39-62 90-117 (229)
23 1nep_A EPV20, BNPC2, epididyma 53.7 4.5 0.00016 25.4 1.0 26 23-59 59-84 (130)
24 3c9a_A Protein giant-lens; arg 49.1 5.1 0.00017 29.0 0.8 16 47-62 178-193 (223)
25 1xwv_A DER F II; beta sheets, 37.2 13 0.00044 23.3 1.2 24 24-59 59-82 (129)
26 3lgb_A DNA primase large subun 23.2 8.5 0.00029 26.9 -1.6 26 38-63 96-124 (194)
27 2ljs_A Trypsin inhibitor 3; be 22.4 23 0.00079 18.3 0.4 18 40-58 3-20 (30)
No 1
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.27 E-value=1.7e-07 Score=66.79 Aligned_cols=29 Identities=17% Similarity=0.465 Sum_probs=25.6
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCC
Q psy4297 35 KSMTAVCEFYVRGECNKDTMCPLRPGLAT 63 (69)
Q Consensus 35 ks~a~vC~ff~~G~C~kG~~CPfRH~~ge 63 (69)
++.+.+|.||.||.|.+|..|||+|...+
T Consensus 67 ~~~~~~C~ffakG~C~~G~~C~y~H~lPt 95 (240)
T 3u1l_A 67 DGQLFFCLFFAKGMCCLGPKCEYLHHIPD 95 (240)
T ss_dssp TTCCSBCHHHHTTCCSCGGGCSSBBSCCC
T ss_pred CCCCeEcCccccCCCCCCCCCCccCCCCC
Confidence 45678999999999999999999998654
No 2
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.12 E-value=8.7e-07 Score=52.59 Aligned_cols=24 Identities=33% Similarity=0.718 Sum_probs=19.0
Q ss_pred cccccccccccCCCCC-CCCCCCCC
Q psy4297 38 TAVCEFYVRGECNKDT-MCPLRPGL 61 (69)
Q Consensus 38 a~vC~ff~~G~C~kG~-~CPfRH~~ 61 (69)
.+||.+|.+|.|++|+ .|||.|..
T Consensus 6 ~~vC~~f~~G~C~rg~~~C~f~H~~ 30 (70)
T 3d2q_A 6 LEVCREYQRGNCNRGENDCRFAHPA 30 (70)
T ss_dssp EEBCHHHHTTCCSSCTTTCSSBCCC
T ss_pred chhCHHHhcCCCCCCCCCCCCccCc
Confidence 4688888888888888 48888854
No 3
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.08 E-value=1.3e-06 Score=52.53 Aligned_cols=28 Identities=29% Similarity=0.642 Sum_probs=23.0
Q ss_pred ccccccccccccccCCCCCCCCCCCCCC
Q psy4297 35 KSMTAVCEFYVRGECNKDTMCPLRPGLA 62 (69)
Q Consensus 35 ks~a~vC~ff~~G~C~kG~~CPfRH~~g 62 (69)
.....||.||++|.|.+|..|+|.|...
T Consensus 13 ~~k~~vCk~fl~G~C~~G~~C~fsH~~~ 40 (72)
T 2rhk_C 13 GEKTVVCKHWLRGLCKKGDQCEFLHEYD 40 (72)
T ss_dssp CCCCSBCHHHHTTCCCCGGGSSSBCSCC
T ss_pred CCcCeeCHHHhcCCCCCCCCCCCccccc
Confidence 4456789999999999998899999864
No 4
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=2.3e-06 Score=51.43 Aligned_cols=27 Identities=30% Similarity=0.669 Sum_probs=20.0
Q ss_pred ccccccccccccCCCCCCCCCCCCCCC
Q psy4297 37 MTAVCEFYVRGECNKDTMCPLRPGLAT 63 (69)
Q Consensus 37 ~a~vC~ff~~G~C~kG~~CPfRH~~ge 63 (69)
...+|.||++|.|.+|..|+|.|....
T Consensus 9 k~~~C~~fl~G~C~~G~~C~fsH~~~~ 35 (77)
T 2d9n_A 9 KTVVCKHWLRGLCKKGDQCEFLHEYDM 35 (77)
T ss_dssp TTSBCHHHHTTCCSCTTSSSSBCSCCT
T ss_pred cceeCHhHccCcCCCCCCCCCcccccc
Confidence 446788888888888888888887543
No 5
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=4.7e-06 Score=52.79 Aligned_cols=36 Identities=17% Similarity=0.372 Sum_probs=29.0
Q ss_pred CCCCCCCCccccccccccccccCCCCC-CCCCCCCCC
Q psy4297 27 PSPFPGMDKSMTAVCEFYVRGECNKDT-MCPLRPGLA 62 (69)
Q Consensus 27 ~lPF~gmDks~a~vC~ff~~G~C~kG~-~CPfRH~~g 62 (69)
..+.-..|.....||.+|++|.|+||. .|+|.|...
T Consensus 9 ~~~~K~~~~~k~~VCr~FlrG~C~rgd~~C~FsH~~~ 45 (98)
T 2e5s_A 9 TATQKLLRTDKLEVCREFQRGNCARGETDCRFAHPAD 45 (98)
T ss_dssp SCCCCCCCSSEEEBCSHHHHTCCSSHHHHCSSBCCSS
T ss_pred cccccccChhhhhhhHHHhcCcCCCCCCCCCCcCCch
Confidence 345666677778899999999999998 799999864
No 6
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.77 E-value=1.1e-05 Score=50.85 Aligned_cols=24 Identities=33% Similarity=0.937 Sum_probs=20.1
Q ss_pred ccccccccccccCCCCCCCCCCCC
Q psy4297 37 MTAVCEFYVRGECNKDTMCPLRPG 60 (69)
Q Consensus 37 ~a~vC~ff~~G~C~kG~~CPfRH~ 60 (69)
...+|.||.+|.|.+|..|||.|.
T Consensus 12 k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 12 KRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CCccCcccccCcCCCCCCCCCCCC
Confidence 457888888888888888888886
No 7
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=97.47 E-value=9.9e-05 Score=43.09 Aligned_cols=29 Identities=28% Similarity=0.674 Sum_probs=23.9
Q ss_pred ccccccccccc-cccCCCCCCCCCCCCCCC
Q psy4297 35 KSMTAVCEFYV-RGECNKDTMCPLRPGLAT 63 (69)
Q Consensus 35 ks~a~vC~ff~-~G~C~kG~~CPfRH~~ge 63 (69)
+....+|.+|. .|.|..|..|.|-|...+
T Consensus 9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e 38 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYGAKCQFAHGLGE 38 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred CccchhCHHhhhCCCcCCCCCccCCCCChh
Confidence 45668999885 789999999999998765
No 8
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=97.45 E-value=4.9e-05 Score=45.47 Aligned_cols=28 Identities=29% Similarity=0.660 Sum_probs=23.9
Q ss_pred ccccccccccc-ccCCCCCCCCCCCCCCCc
Q psy4297 36 SMTAVCEFYVR-GECNKDTMCPLRPGLATP 64 (69)
Q Consensus 36 s~a~vC~ff~~-G~C~kG~~CPfRH~~gek 64 (69)
+...+|.||++ |.|.+ ..|||+|...+.
T Consensus 42 ~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 42 TKMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp TSCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred ccCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 45679999999 99999 999999987653
No 9
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.42 E-value=6.3e-05 Score=45.07 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=22.8
Q ss_pred cccccccccc-ccCCCCCCCCCCCCCCC
Q psy4297 37 MTAVCEFYVR-GECNKDTMCPLRPGLAT 63 (69)
Q Consensus 37 ~a~vC~ff~~-G~C~kG~~CPfRH~~ge 63 (69)
...+|.||++ |.|. |..|+|+|...+
T Consensus 37 ~~~~C~~f~~~G~C~-~~~C~f~H~~~~ 63 (77)
T 2d9n_A 37 KMPECYFYSKFGECS-NKECPFLHIDPE 63 (77)
T ss_dssp TSCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred cCCCCcccCCCCccC-CCCeeccCCCcc
Confidence 3569999999 9999 899999998754
No 10
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=97.40 E-value=5.4e-05 Score=44.74 Aligned_cols=26 Identities=23% Similarity=0.635 Sum_probs=23.0
Q ss_pred ccccccccccccccCCCCCCCCCCCCC
Q psy4297 35 KSMTAVCEFYVRGECNKDTMCPLRPGL 61 (69)
Q Consensus 35 ks~a~vC~ff~~G~C~kG~~CPfRH~~ 61 (69)
.....+|.+|++|.|++| .|+|.|..
T Consensus 39 ~~~~~vC~~flkG~C~r~-~C~y~H~~ 64 (70)
T 3d2q_A 39 DNTVTVCMDYIKGRCSRE-KCKYFHPP 64 (70)
T ss_dssp TTEEEBCHHHHTTCCCCT-TCCSBCCC
T ss_pred CCcceeccccCcCCCCCC-CcCeeCCH
Confidence 345789999999999999 99999975
No 11
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=97.31 E-value=0.0001 Score=45.49 Aligned_cols=25 Identities=24% Similarity=0.592 Sum_probs=22.6
Q ss_pred cccccccccccCCCCC-CCCCCCCCC
Q psy4297 38 TAVCEFYVRGECNKDT-MCPLRPGLA 62 (69)
Q Consensus 38 a~vC~ff~~G~C~kG~-~CPfRH~~g 62 (69)
-+||.+|++|.|++|. .|+|.|...
T Consensus 9 ~~VCr~FlrG~C~r~d~~C~f~H~~~ 34 (83)
T 3d2n_A 9 LEVCREFQRGTCSRPDTECKFAHPSK 34 (83)
T ss_dssp EEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred chhcHHHhcCCCCCCCCCCCCcCCCc
Confidence 5899999999999995 999999974
No 12
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=97.23 E-value=0.00021 Score=44.77 Aligned_cols=26 Identities=23% Similarity=0.592 Sum_probs=22.9
Q ss_pred ccccccccccccCCCCC-CCCCCCCCC
Q psy4297 37 MTAVCEFYVRGECNKDT-MCPLRPGLA 62 (69)
Q Consensus 37 ~a~vC~ff~~G~C~kG~-~CPfRH~~g 62 (69)
..+||..|++|.|+||. .|+|.|...
T Consensus 16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~ 42 (89)
T 2rpp_A 16 TLEVCRQFQRGTCSRSDEECKFAHPPK 42 (89)
T ss_dssp EECBCHHHHHTCCCCCTTTSSSBCCCS
T ss_pred hhhhchHHhcCCCCCCCCCCCCcCCCc
Confidence 46899999999999997 999999865
No 13
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.21 E-value=0.00011 Score=46.44 Aligned_cols=27 Identities=26% Similarity=0.603 Sum_probs=23.8
Q ss_pred ccccccccccccccCCCCCCCCCCCCCC
Q psy4297 35 KSMTAVCEFYVRGECNKDTMCPLRPGLA 62 (69)
Q Consensus 35 ks~a~vC~ff~~G~C~kG~~CPfRH~~g 62 (69)
.....+|.+|++|.|.+| .|||.|...
T Consensus 53 ~~~~~vC~~flkG~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 53 DNTVTVCMDYIKGRCMRE-KCKYFHPPA 79 (98)
T ss_dssp TCEEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred CCccccchhhccCCCCCC-CcCccCChH
Confidence 356789999999999999 999999863
No 14
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=96.97 E-value=0.00022 Score=43.99 Aligned_cols=26 Identities=15% Similarity=0.396 Sum_probs=22.9
Q ss_pred ccccccccccccccCCCCCCCCCCCCC
Q psy4297 35 KSMTAVCEFYVRGECNKDTMCPLRPGL 61 (69)
Q Consensus 35 ks~a~vC~ff~~G~C~kG~~CPfRH~~ 61 (69)
.....+|..|++|.|.++ .|||.|..
T Consensus 40 ~~~~~vC~dflkG~C~r~-~C~y~H~~ 65 (83)
T 3d2n_A 40 NGRVIACFDSLKGRCSRE-NCKYLHPP 65 (83)
T ss_dssp TTEEECCHHHHTTCCCCS-SCSSCCCC
T ss_pred CCceeehhHhhhccccCC-CcceeCCh
Confidence 345799999999999998 89999975
No 15
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=96.63 E-value=0.00072 Score=42.39 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=22.0
Q ss_pred cccccccc-cccCCCCCCCCCCCCCC
Q psy4297 38 TAVCEFYV-RGECNKDTMCPLRPGLA 62 (69)
Q Consensus 38 a~vC~ff~-~G~C~kG~~CPfRH~~g 62 (69)
..+|.||. +|.|.+|..|+|.|..-
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 47899995 89999999999999853
No 16
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=96.25 E-value=0.00071 Score=39.38 Aligned_cols=27 Identities=22% Similarity=0.567 Sum_probs=0.0
Q ss_pred cccccc-ccccccCCCCCCCCCCCCCCC
Q psy4297 37 MTAVCE-FYVRGECNKDTMCPLRPGLAT 63 (69)
Q Consensus 37 ~a~vC~-ff~~G~C~kG~~CPfRH~~ge 63 (69)
...+|. |+..|.|..|..|.|.|...|
T Consensus 49 k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 49 KTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp ----------------------------
T ss_pred cCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 357997 456799999999999998765
No 17
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=95.89 E-value=0.0029 Score=39.51 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=22.5
Q ss_pred cccccccccccccCCCCCCCCCCCCC
Q psy4297 36 SMTAVCEFYVRGECNKDTMCPLRPGL 61 (69)
Q Consensus 36 s~a~vC~ff~~G~C~kG~~CPfRH~~ 61 (69)
....+|..|++|.|+++ .|+|-|..
T Consensus 49 ~~~~vC~dflkG~C~r~-~Cky~H~~ 73 (89)
T 2rpp_A 49 GRVIACFDSLKGRCSRE-NCKYLHPP 73 (89)
T ss_dssp TBEEBCHHHHHTCCCCT-TCCSBCCC
T ss_pred CceeeehhhhhCcCCCC-CcceecCH
Confidence 45799999999999998 89999974
No 18
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.68 E-value=0.0043 Score=36.07 Aligned_cols=26 Identities=23% Similarity=0.613 Sum_probs=22.7
Q ss_pred ccccccccccc-ccCCCCCCCCCCCCC
Q psy4297 36 SMTAVCEFYVR-GECNKDTMCPLRPGL 61 (69)
Q Consensus 36 s~a~vC~ff~~-G~C~kG~~CPfRH~~ 61 (69)
....||.-|.- |-|.+|..||+.|..
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDi 44 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDI 44 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred cccchhhhccccccCCCCCCCCccccC
Confidence 46789998865 999999999999975
No 19
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.03 E-value=0.031 Score=33.98 Aligned_cols=25 Identities=28% Similarity=0.765 Sum_probs=22.3
Q ss_pred cccccccccccCCCCCCCCCCCCCC
Q psy4297 38 TAVCEFYVRGECNKDTMCPLRPGLA 62 (69)
Q Consensus 38 a~vC~ff~~G~C~kG~~CPfRH~~g 62 (69)
-.+|..|.+|.|+.|+.|-|-|-..
T Consensus 20 ~~LC~~~~~G~C~~G~~C~FAHG~~ 44 (69)
T 2d9m_A 20 FSICDRYMNGTCPEGNSCKFAHGNA 44 (69)
T ss_dssp CSBCHHHHHSCCSSCSSCSSBSSHH
T ss_pred cccCcccCcCCCCCCCccCCcCCHH
Confidence 3899999999999999999999653
No 20
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=84.91 E-value=0.19 Score=30.97 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=17.8
Q ss_pred ccccccccccccCCCCCCCCCCCCC
Q psy4297 37 MTAVCEFYVRGECNKDTMCPLRPGL 61 (69)
Q Consensus 37 ~a~vC~ff~~G~C~kG~~CPfRH~~ 61 (69)
....|.||.. |++ ..|||+|.+
T Consensus 8 ~~e~CKf~~~--Ctn-~~C~f~Hp~ 29 (80)
T 2lhn_A 8 SLEQCKFGTH--CTN-KRCKYRHAR 29 (80)
Confidence 3478998885 998 999999975
No 21
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=67.44 E-value=1.9 Score=31.16 Aligned_cols=25 Identities=28% Similarity=0.660 Sum_probs=20.0
Q ss_pred cccccccccccCCCCCCCCCCCCCCC
Q psy4297 38 TAVCEFYVRGECNKDTMCPLRPGLAT 63 (69)
Q Consensus 38 a~vC~ff~~G~C~kG~~CPfRH~~ge 63 (69)
-.||..|++|.|+. ..|.-.|.--+
T Consensus 175 LHIC~~Fl~G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 175 LHICEHFTRGNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp BCSCHHHHTTCCCC-SSCSSCCCTTS
T ss_pred eeccchhhcCCcCC-CCccCccCccC
Confidence 47888888888888 78888887654
No 22
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=55.25 E-value=4.6 Score=29.15 Aligned_cols=24 Identities=17% Similarity=0.668 Sum_probs=19.9
Q ss_pred ccccccccccC----CCCCCCCCCCCCC
Q psy4297 39 AVCEFYVRGEC----NKDTMCPLRPGLA 62 (69)
Q Consensus 39 ~vC~ff~~G~C----~kG~~CPfRH~~g 62 (69)
..|.||+.|.| ..++.|-|.|+.-
T Consensus 90 HLCK~~l~G~C~~~~~~~~~Ck~SHdi~ 117 (229)
T 3u9g_A 90 HLCKLNLLGRCHYAQSQRNLCKYSHDVL 117 (229)
T ss_dssp CCCHHHHTTCCGGGTCCSSCCSSCSCTT
T ss_pred eechhhhcCcCCcccCCCCCcccccccC
Confidence 57889999999 4678999999863
No 23
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=53.71 E-value=4.5 Score=25.37 Aligned_cols=26 Identities=27% Similarity=0.599 Sum_probs=17.8
Q ss_pred cCCCCCCCCCCCccccccccccccccCCCCCCCCCCC
Q psy4297 23 HDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLRP 59 (69)
Q Consensus 23 ~G~~~lPF~gmDks~a~vC~ff~~G~C~kG~~CPfRH 59 (69)
.+-.++||++++. ..|. -|..||.+-
T Consensus 59 ~~gv~vp~~~~~~---daC~--------~g~~CPl~~ 84 (130)
T 1nep_A 59 VMGIPVPFPIPES---DGCK--------SGIRCPIEK 84 (130)
T ss_dssp ETTEEEECCCSCC---BGGG--------TTCCSSBCT
T ss_pred ECCEEeeccCCCC---Cccc--------CCCcCcccC
Confidence 3456789998773 4453 378999763
No 24
>3c9a_A Protein giant-lens; argos, EGF, EGFR inhibitor, inhibitor, developmental protein, glycoprotein, secreted, sensory transduction, vision; 1.60A {Drosophila melanogaster} PDB: 3cgu_A
Probab=49.05 E-value=5.1 Score=29.00 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=13.9
Q ss_pred ccCCCCCCCCCCCCCC
Q psy4297 47 GECNKDTMCPLRPGLA 62 (69)
Q Consensus 47 G~C~kG~~CPfRH~~g 62 (69)
=+|++|..||++|+..
T Consensus 178 CqCP~gH~C~~~h~~~ 193 (223)
T 3c9a_A 178 CQCPKGHRCPSHHTQS 193 (223)
T ss_dssp CBCCTTEECCSSTTST
T ss_pred ecCCCcCcCCcccCCC
Confidence 3599999999999874
No 25
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A
Probab=37.23 E-value=13 Score=23.27 Aligned_cols=24 Identities=42% Similarity=0.710 Sum_probs=16.2
Q ss_pred CCCCCCCCCCCccccccccccccccCCCCCCCCCCC
Q psy4297 24 DILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLRP 59 (69)
Q Consensus 24 G~~~lPF~gmDks~a~vC~ff~~G~C~kG~~CPfRH 59 (69)
+-..+||++++ ...| .|..||.+-
T Consensus 59 ~g~~ip~p~~~---~daC---------~~~~CPl~~ 82 (129)
T 1xwv_A 59 DGLEIDVPGID---TNAC---------HFMKCPLVK 82 (129)
T ss_dssp TTEEECCCSCC---CBGG---------GTSCSSBCT
T ss_pred cCEEeecCCCC---CCcc---------CCccCcccC
Confidence 34678999875 3445 348899763
No 26
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=23.15 E-value=8.5 Score=26.90 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=16.0
Q ss_pred cccccccccc-cCCCCC--CCCCCCCCCC
Q psy4297 38 TAVCEFYVRG-ECNKDT--MCPLRPGLAT 63 (69)
Q Consensus 38 a~vC~ff~~G-~C~kG~--~CPfRH~~ge 63 (69)
+..|.-.... .-.+|. -|||||-..|
T Consensus 96 p~sC~~i~s~~~pg~gd~HGCPfr~~~~~ 124 (194)
T 3lgb_A 96 PWDCHTILSKPRPGRGDYHGCPFRDWSHE 124 (194)
T ss_dssp CCCHHHHHHSCCCCTTCCCSCHHHHSCHH
T ss_pred CCChHHHHhCCCCCCCCcCCCCcCCCCHH
Confidence 5678766543 333444 4999996543
No 27
>2ljs_A Trypsin inhibitor 3; beta strand, helix, cyclic backbone, hydrolase inhibitor; HET: PCA; NMR {Momordica cochinchinensis}
Probab=22.38 E-value=23 Score=18.27 Aligned_cols=18 Identities=28% Similarity=0.846 Sum_probs=12.4
Q ss_pred cccccccccCCCCCCCCCC
Q psy4297 40 VCEFYVRGECNKDTMCPLR 58 (69)
Q Consensus 40 vC~ff~~G~C~kG~~CPfR 58 (69)
+|...++ .|.|.+.||=-
T Consensus 3 ~cprilk-kckrdsdcpge 20 (30)
T 2ljs_A 3 ACPRILK-KCRRDSDCPGE 20 (30)
T ss_dssp CCCCCCC-BCSSGGGSSTT
T ss_pred ccHHHHH-HhccccCCchh
Confidence 5655444 69999999843
Done!