Your job contains 1 sequence.
>psy4297
MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLRPG
LATPVLGAS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4297
(69 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|D4A905 - symbol:Cpsf4 "Cleavage and polyadenyla... 180 6.2e-14 1
UNIPROTKB|E1BV31 - symbol:CPSF4 "Uncharacterized protein"... 178 1.0e-13 1
UNIPROTKB|O19137 - symbol:CPSF4 "Cleavage and polyadenyla... 178 1.0e-13 1
UNIPROTKB|E2RBK7 - symbol:CPSF4 "Uncharacterized protein"... 178 1.0e-13 1
UNIPROTKB|J9P398 - symbol:CPSF4 "Uncharacterized protein"... 178 1.0e-13 1
UNIPROTKB|C9JEV9 - symbol:CPSF4 "Cleavage and polyadenyla... 178 1.0e-13 1
UNIPROTKB|O95639 - symbol:CPSF4 "Cleavage and polyadenyla... 178 1.0e-13 1
UNIPROTKB|F1REX3 - symbol:LOC100518830 "Uncharacterized p... 178 1.0e-13 1
MGI|MGI:1861602 - symbol:Cpsf4 "cleavage and polyadenylat... 178 1.0e-13 1
RGD|620440 - symbol:Cpsf4 "cleavage and polyadenylation s... 178 1.0e-13 1
ZFIN|ZDB-GENE-990415-180 - symbol:cpsf4 "cleavage and pol... 177 1.3e-13 1
UNIPROTKB|Q66KE3 - symbol:cpsf4 "Cleavage and polyadenyla... 171 6.2e-13 1
UNIPROTKB|Q6DJP7 - symbol:cpsf4 "Cleavage and polyadenyla... 169 1.1e-12 1
UNIPROTKB|E1BVA5 - symbol:CPSF4L "Uncharacterized protein... 138 8.1e-11 2
FB|FBgn0015621 - symbol:Clp "Clipper" species:7227 "Droso... 133 2.1e-08 1
UNIPROTKB|F1LWJ4 - symbol:F1LWJ4 "Uncharacterized protein... 126 7.1e-08 1
UNIPROTKB|A6NMK7 - symbol:CPSF4L "Putative cleavage and p... 121 1.1e-07 1
UNIPROTKB|E2RBM0 - symbol:CPSF4 "Uncharacterized protein"... 109 2.1e-06 1
>UNIPROTKB|D4A905 [details] [associations]
symbol:Cpsf4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 RGD:620440 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000009627
OMA:PLDQVTC OrthoDB:EOG4KH2VQ IPI:IPI00358639
Ensembl:ENSRNOT00000038958 Uniprot:D4A905
Length = 243
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 32/58 (55%), Positives = 44/58 (75%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+ IA+E Q P PFPGMDKS TAVCEF+++ C K +MCP R
Sbjct: 1 MQEIIASVDHIKFDLAIAVEQQLGAQPLPFPGMDKSGTAVCEFFLKAACGKGSMCPFR 58
>UNIPROTKB|E1BV31 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0005847 CTD:10898
GeneTree:ENSGT00390000009627 KO:K14404 OMA:PLDQVTC
EMBL:AADN02023770 IPI:IPI00572429 RefSeq:XP_414800.1
UniGene:Gga.12217 Ensembl:ENSGALT00000007510 GeneID:416494
KEGG:gga:416494 NextBio:20819939 Uniprot:E1BV31
Length = 243
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A+V++IKFD+E+A+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQELIASVDHIKFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>UNIPROTKB|O19137 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation specificity
factor subunit 4" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084 HSSP:P47974
GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108 EMBL:U96448
IPI:IPI00715166 RefSeq:NP_776367.1 UniGene:Bt.55595
ProteinModelPortal:O19137 SMR:O19137 STRING:O19137
Ensembl:ENSBTAT00000002701 GeneID:280875 KEGG:bta:280875 CTD:10898
GeneTree:ENSGT00390000009627 InParanoid:O19137 KO:K14404
OMA:PLDQVTC OrthoDB:EOG4KH2VQ NextBio:20805014 Uniprot:O19137
Length = 243
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>UNIPROTKB|E2RBK7 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0005847 GeneTree:ENSGT00390000009627
EMBL:AAEX03004276 Ensembl:ENSCAFT00000023892 Uniprot:E2RBK7
Length = 212
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>UNIPROTKB|J9P398 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
CTD:10898 GeneTree:ENSGT00390000009627 KO:K14404 OMA:PLDQVTC
EMBL:AAEX03004276 RefSeq:XP_850149.1 ProteinModelPortal:J9P398
Ensembl:ENSCAFT00000043832 GeneID:489859 KEGG:cfa:489859
Uniprot:J9P398
Length = 269
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>UNIPROTKB|C9JEV9 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0005739 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000212457 HGNC:HGNC:2327 EMBL:AC073063 IPI:IPI00927478
ProteinModelPortal:C9JEV9 SMR:C9JEV9 STRING:C9JEV9
Ensembl:ENST00000451876 ArrayExpress:C9JEV9 Bgee:C9JEV9
Uniprot:C9JEV9
Length = 211
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>UNIPROTKB|O95639 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0019048
"virus-host interaction" evidence=TAS] [GO:0019054 "modulation by
virus of host cellular process" evidence=TAS] [GO:0019058 "viral
infectious cycle" evidence=TAS] [GO:0046778 "modification by virus
of host mRNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000571 InterPro:IPR001878
Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158
SMART:SM00343 SMART:SM00356 GO:GO:0005739 Reactome:REACT_116125
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
EMBL:CH236956 EMBL:CH471091 GO:GO:0019058 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG5084 GO:GO:0005847 HOGENOM:HOG000212457
HOVERGEN:HBG051108 CTD:10898 KO:K14404 OMA:PLDQVTC
OrthoDB:EOG4KH2VQ EMBL:U79569 EMBL:CR542161 EMBL:EF191081
EMBL:BC003101 EMBL:BC050738 IPI:IPI00009137 IPI:IPI00029707
IPI:IPI00375469 RefSeq:NP_001075028.1 RefSeq:NP_006684.1
UniGene:Hs.489287 PDB:2D9N PDB:2RHK PDBsum:2D9N PDBsum:2RHK
ProteinModelPortal:O95639 SMR:O95639 DIP:DIP-48675N IntAct:O95639
MINT:MINT-1429837 STRING:O95639 PhosphoSite:O95639 PaxDb:O95639
PRIDE:O95639 DNASU:10898 Ensembl:ENST00000292476
Ensembl:ENST00000436336 GeneID:10898 KEGG:hsa:10898 UCSC:uc003uqi.3
UCSC:uc003uqj.3 UCSC:uc003uqk.3 GeneCards:GC07P099036
HGNC:HGNC:2327 HPA:HPA049094 MIM:603052 neXtProt:NX_O95639
PharmGKB:PA26844 InParanoid:O95639 PhylomeDB:O95639
EvolutionaryTrace:O95639 GenomeRNAi:10898 NextBio:41385
ArrayExpress:O95639 Bgee:O95639 CleanEx:HS_CPSF4
Genevestigator:O95639 GermOnline:ENSG00000160917 GO:GO:0046778
Uniprot:O95639
Length = 269
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>UNIPROTKB|F1REX3 [details] [associations]
symbol:LOC100518830 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000009627 KO:K14404 EMBL:FP102617
RefSeq:XP_003124350.1 Ensembl:ENSSSCT00000008355 GeneID:100518830
KEGG:ssc:100518830 OMA:MQDIVAS Uniprot:F1REX3
Length = 269
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>MGI|MGI:1861602 [details] [associations]
symbol:Cpsf4 "cleavage and polyadenylation specific factor
4" species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
MGI:MGI:1861602 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084
GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108 CTD:10898
GeneTree:ENSGT00390000009627 KO:K14404 OrthoDB:EOG4KH2VQ
EMBL:AK046064 EMBL:AF033201 EMBL:BC057067 IPI:IPI00309761
IPI:IPI00380450 IPI:IPI01027761 RefSeq:NP_848671.1
UniGene:Mm.196884 ProteinModelPortal:Q8BQZ5 SMR:Q8BQZ5
STRING:Q8BQZ5 PhosphoSite:Q8BQZ5 PaxDb:Q8BQZ5 PRIDE:Q8BQZ5
Ensembl:ENSMUST00000070487 GeneID:54188 KEGG:mmu:54188
UCSC:uc009amj.1 ChiTaRS:CPSF4 NextBio:311022 Bgee:Q8BQZ5
CleanEx:MM_CPSF4 Genevestigator:Q8BQZ5
GermOnline:ENSMUSG00000029625 Uniprot:Q8BQZ5
Length = 211
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>RGD|620440 [details] [associations]
symbol:Cpsf4 "cleavage and polyadenylation specific factor 4"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 RGD:620440 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084
HSSP:P47974 GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108
CTD:10898 GeneTree:ENSGT00390000009627 KO:K14404 OrthoDB:EOG4KH2VQ
EMBL:BC089824 IPI:IPI00553898 RefSeq:NP_001012351.1
UniGene:Rn.104788 ProteinModelPortal:Q5FVR7 SMR:Q5FVR7
Ensembl:ENSRNOT00000042474 GeneID:304277 KEGG:rno:304277
InParanoid:Q5FVR7 NextBio:652764 ArrayExpress:Q5FVR7
Genevestigator:Q5FVR7 GermOnline:ENSRNOG00000025217 Uniprot:Q5FVR7
Length = 243
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58
>ZFIN|ZDB-GENE-990415-180 [details] [associations]
symbol:cpsf4 "cleavage and polyadenylation specific
factor 4" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0042462 "eye photoreceptor cell development" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356
ZFIN:ZDB-GENE-990415-180 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084 GO:GO:0042462
HOGENOM:HOG000212457 HOVERGEN:HBG051108 CTD:10898 KO:K14404
OrthoDB:EOG4KH2VQ EMBL:U70479 EMBL:BC045289 IPI:IPI00630205
RefSeq:NP_571084.1 UniGene:Dr.75095 SMR:Q98881 STRING:Q98881
GeneID:30203 KEGG:dre:30203 InParanoid:Q98881 NextBio:20806666
Uniprot:Q98881
Length = 271
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A V++IKFD+EIA+E Q P PFPGMDKS AVCE+++R C K MCP R
Sbjct: 1 MQELIATVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEYFMRAACMKGGMCPFR 58
>UNIPROTKB|Q66KE3 [details] [associations]
symbol:cpsf4 "Cleavage and polyadenylation specificity
factor subunit 4" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] InterPro:IPR000571 InterPro:IPR001878
Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158
SMART:SM00343 SMART:SM00356 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
eggNOG:COG5084 GO:GO:0042462 GO:GO:0005847 HOVERGEN:HBG051108
CTD:10898 KO:K14404 OrthoDB:EOG4KH2VQ EMBL:BC080440
RefSeq:NP_001007933.1 UniGene:Str.3196 ProteinModelPortal:Q66KE3
SMR:Q66KE3 STRING:Q66KE3 GeneID:493312 KEGG:xtr:493312
Xenbase:XB-GENE-948302 InParanoid:Q66KE3 Bgee:Q66KE3 Uniprot:Q66KE3
Length = 269
Score = 171 (65.3 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 31/58 (53%), Positives = 42/58 (72%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A V++I+FD+E+A+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQELIACVDHIRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFR 58
>UNIPROTKB|Q6DJP7 [details] [associations]
symbol:cpsf4 "Cleavage and polyadenylation specificity
factor subunit 4" species:8355 "Xenopus laevis" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0005847
HOVERGEN:HBG051108 CTD:10898 KO:K14404 EMBL:BC075128
RefSeq:NP_001086337.1 UniGene:Xl.25683 ProteinModelPortal:Q6DJP7
SMR:Q6DJP7 GeneID:444766 KEGG:xla:444766 Xenbase:XB-GENE-948308
Uniprot:Q6DJP7
Length = 269
Score = 169 (64.5 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 30/58 (51%), Positives = 42/58 (72%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ L+A V++++FD+E+A+E Q P PFPGMDKS AVCEF+++ C K MCP R
Sbjct: 1 MQELIACVDHLRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFR 58
>UNIPROTKB|E1BVA5 [details] [associations]
symbol:CPSF4L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158
SMART:SM00343 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
GeneTree:ENSGT00390000009627 EMBL:AADN02030074 IPI:IPI00598491
Ensembl:ENSGALT00000007066 OMA:ECCEGFR Uniprot:E1BVA5
Length = 267
Score = 138 (53.6 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
Identities = 27/55 (49%), Positives = 34/55 (61%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMC 55
ME LVA VE I FD+E +E Q ++ PFPG DK AVCEF+ +G C + C
Sbjct: 1 MEELVAGVERIGFDVEADVEQQQEVQLLPFPGKDKLGAAVCEFFTQGLCTRGECC 55
Score = 32 (16.3 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 51 KDTMCPLRPGLA 62
K CP +PG A
Sbjct: 183 KGAECPQKPGPA 194
>FB|FBgn0015621 [details] [associations]
symbol:Clp "Clipper" species:7227 "Drosophila melanogaster"
[GO:0004521 "endoribonuclease activity" evidence=IDA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0006378
"mRNA polyadenylation" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0022008
GO:GO:0046872 GO:GO:0008270 GO:GO:0006378 GO:GO:0003676
GO:GO:0004521 Gene3D:4.10.60.10 GO:GO:0005847 GO:GO:0006379
EMBL:U26549 ProteinModelPortal:Q24081 SMR:Q24081 STRING:Q24081
PRIDE:Q24081 FlyBase:FBgn0015621 InParanoid:Q24081
OrthoDB:EOG4XKSPS ArrayExpress:Q24081 Bgee:Q24081 Uniprot:Q24081
Length = 296
Score = 133 (51.9 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 28/60 (46%), Positives = 36/60 (60%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRG--ECNKDTMCPLR 58
M+ L+ANV ++F E L Q +P PF GMDKS+ AVC F R EC+K + CP R
Sbjct: 1 MDILLANVSGLQFKAERDLIEQVGAIPLPFYGMDKSIAAVCNFITRNGQECDKGSACPFR 60
>UNIPROTKB|F1LWJ4 [details] [associations]
symbol:F1LWJ4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00390000009627 IPI:IPI00776496
Ensembl:ENSRNOT00000029618 Uniprot:F1LWJ4
Length = 243
Score = 126 (49.4 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 24/53 (45%), Positives = 31/53 (58%)
Query: 4 LVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCP 56
L +++ KF +EI +E Q FP MDKS AVCEF+V+ C K MCP
Sbjct: 5 LAGTIDHNKFALEITMEQQLGAQQLSFPSMDKSGAAVCEFFVKAACGKGGMCP 57
>UNIPROTKB|A6NMK7 [details] [associations]
symbol:CPSF4L "Putative cleavage and polyadenylation
specificity factor subunit 4-like protein" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 eggNOG:COG5084 EMBL:AC087301 EMBL:BC157870
IPI:IPI00376104 RefSeq:NP_001123357.1 UniGene:Hs.534707
ProteinModelPortal:A6NMK7 SMR:A6NMK7 PhosphoSite:A6NMK7
PRIDE:A6NMK7 Ensembl:ENST00000344935 GeneID:642843 KEGG:hsa:642843
UCSC:uc010dfk.1 CTD:642843 GeneCards:GC17M071244 HGNC:HGNC:33632
HPA:HPA044047 neXtProt:NX_A6NMK7 PharmGKB:PA162382768
HOGENOM:HOG000212457 HOVERGEN:HBG051108 OMA:HVKPASK
GenomeRNAi:642843 NextBio:114229 Bgee:A6NMK7 CleanEx:HS_CPSF4L
Genevestigator:A6NMK7 Uniprot:A6NMK7
Length = 179
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A +E F E +E Q PF GMDKS +AVC F+ +G C K +CP R
Sbjct: 1 MQEVIAGLERFTFAFEKDVEMQKGTGLLPFQGMDKSASAVCNFFTKGLCEKGKLCPFR 58
>UNIPROTKB|E2RBM0 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00390000009627 EMBL:AAEX03004276
Ensembl:ENSCAFT00000023887 NextBio:20862973 Uniprot:E2RBM0
Length = 164
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
M+ ++A+V++IKFD+EIA+E Q P PFPGMD A G MCP R
Sbjct: 1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDSERGAGAAG--EGHDRLGGMCPFR 56
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.430 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 69 69 0.00091 102 3 11 22 0.46 28
29 0.39 29
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 499 (53 KB)
Total size of DFA: 97 KB (2070 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 8.26u 0.09s 8.35t Elapsed: 00:00:04
Total cpu time: 8.26u 0.09s 8.35t Elapsed: 00:00:05
Start: Thu Aug 15 11:45:54 2013 End: Thu Aug 15 11:45:59 2013