RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4297
(69 letters)
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger.
Length = 27
Score = 27.2 bits (61), Expect = 0.13
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 38 TAVCEFYVRGECNKDTMCP 56
T +C+F+ RG C + C
Sbjct: 4 TELCKFFKRGYCPRGDRCK 22
>gnl|CDD|205447 pfam13267, DUF4058, Protein of unknown function (DUF4058). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are typically between 244 and 264 amino
acids in length.
Length = 254
Score = 26.1 bits (58), Expect = 1.5
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 26 LPSPFPGMD 34
+PSPFPGMD
Sbjct: 1 MPSPFPGMD 9
>gnl|CDD|235589 PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase;
Reviewed.
Length = 425
Score = 26.0 bits (58), Expect = 1.5
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 5 VANVENIKFDIEIALENQH 23
V N+KFDIE+ E
Sbjct: 202 VTVTGNLKFDIEVPPELAA 220
>gnl|CDD|237598 PRK14056, PRK14056, phenylalanine 4-monooxygenase; Provisional.
Length = 578
Score = 25.8 bits (57), Expect = 1.9
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 3 CLVANVENIKFDIEIALENQHDI 25
CL VE + F IE +DI
Sbjct: 239 CLTDAVEKVPFSIEACTSTTYDI 261
>gnl|CDD|183011 PRK11171, PRK11171, hypothetical protein; Provisional.
Length = 266
Score = 25.2 bits (56), Expect = 2.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 21 NQHDILPSPFPGMD 34
N+ DI P P PG D
Sbjct: 153 NESDIEPIPMPGTD 166
>gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The N-terminal
end matches very strongly a pfam Mg_chelatase domain
[Unknown function, General].
Length = 499
Score = 24.8 bits (54), Expect = 4.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 15 IEIALENQHDILPSPFPGMDKSMTAVC 41
+EIA H++L PG K+M A
Sbjct: 204 LEIAAAGGHNLLLFGPPGSGKTMLASR 230
>gnl|CDD|200251 TIGR03214, ura-cupin, putative allantoin catabolism protein. This
model represents a protein containing a tandem
arrangement of cupin domains (N-terminal part of
pfam07883 and C-terminal more distantly related to
pfam00190). This protein is found in the vicinity of
genes involved in the catabolism of allantoin, a
breakdown product of urate and sometimes of urate
iteslf. The distribution of pathway components in the
genomes in which this family is observed suggests that
the function is linked to the allantoate catabolism to
glyoxylate pathway (GenProp0686) since it is sometimes
found in genomes lacking any elements of the
xanthine-to-allantoin pathways (e.g. in Enterococcus
faecalis).
Length = 252
Score = 24.7 bits (54), Expect = 4.8
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 21 NQHDILPSPFPGMD 34
N+ DI P + GMD
Sbjct: 142 NERDIEPEAYEGMD 155
>gnl|CDD|237846 PRK14876, PRK14876, conjugal transfer mating pair stabilization
protein TraN; Provisional.
Length = 928
Score = 24.5 bits (53), Expect = 5.0
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 24 DILPSPFPGMDK-----SMTAVCEFYV-RGECNKD----TMCPLRPG 60
D+ PSP PG+ K + A C+FY + +C D T CP+ G
Sbjct: 431 DLKPSPLPGIPKLCKKVRVKADCDFYKGQMDCWTDPQGVTHCPVNDG 477
>gnl|CDD|217304 pfam02959, Tax, HTLV Tax. Human T-cell leukaemia virus type I
(HTLV-I) is the etiological agent for adult T-cell
leukaemia (ATL), as well as for tropical spastic
paraparesis (TSP) and HTLV-I associate myelopathy
(HAM). A biological understanding of the involvement of
HTLV-I and in ATL has focused significantly on the
workings of the virally-encoded 40 kDa
phospho-oncoprotein, Tax. Tax is a transcriptional
activator. Its ability to modulate the expression and
function of many cellular genes has been reasoned to be
a major contributory mechanism explaining
HTLV-I-mediated transformation of cells. In activating
cellular gene expression, Tax impinges upon several
cellular signal-transduction pathways, including those
for CREB/ATF and NF-kappaB.
Length = 169
Score = 24.6 bits (53), Expect = 5.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 30 FPGMDKSMTAVCEFYVRGECNKDTMCPLRPGLATPVL 66
FPG +S+ YV G+C + CP+ GL + L
Sbjct: 2 FPGFGQSLLFGYPVYVFGDCVQGDWCPISGGLCSARL 38
>gnl|CDD|235202 PRK04023, PRK04023, DNA polymerase II large subunit; Validated.
Length = 1121
Score = 24.5 bits (54), Expect = 5.1
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 8 VENIKF--DIEIA----LENQHDILPSPF 30
VE I +I I LEN H +LPS +
Sbjct: 396 VEEILDLGEILINYGDFLENNHPLLPSSY 424
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.430
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,345,206
Number of extensions: 231511
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 14
Length of query: 69
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 30
Effective length of database: 9,207,796
Effective search space: 276233880
Effective search space used: 276233880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)