RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4297
         (69 letters)



>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing
          protein C19orf7 (KIAA1064) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 29

 Score = 24.1 bits (52), Expect = 0.49
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 40 VCEFYVRGECNKDTMCP 56
          +C+FY+ G C +   CP
Sbjct: 8  LCKFYITGFCARAENCP 24


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0615    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 252,635
Number of extensions: 9089
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 2
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)