BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy43
(64 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BHC1|RB39B_MOUSE Ras-related protein Rab-39B OS=Mus musculus GN=Rab39b PE=2 SV=1
Length = 213
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/55 (63%), Positives = 48/55 (87%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
++ ++ YQFRLI+IGDSTVGKS L++ FT+G+FA++SDPTVGVDFF+RLV + G
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPG 55
>sp|Q96DA2|RB39B_HUMAN Ras-related protein Rab-39B OS=Homo sapiens GN=RAB39B PE=1 SV=1
Length = 213
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/55 (63%), Positives = 48/55 (87%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
++ ++ YQFRLI+IGDSTVGKS L++ FT+G+FA++SDPTVGVDFF+RLV + G
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPG 55
>sp|Q17QU4|RB39B_BOVIN Ras-related protein Rab-39B OS=Bos taurus GN=RAB39B PE=2 SV=1
Length = 213
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/55 (63%), Positives = 48/55 (87%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
++ ++ YQFRLI+IGDSTVGKS L++ FT+G+FA++SDPTVGVDFF+RLV + G
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPG 55
>sp|Q8BHD0|RB39A_MOUSE Ras-related protein Rab-39A OS=Mus musculus GN=Rab39a PE=2 SV=1
Length = 217
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/59 (55%), Positives = 43/59 (72%), Gaps = 4/59 (6%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKF----AEISDPTVGVDFFARLVTMRDG 57
++ ++ YQFRLI+IGDSTVGKS LL FT G+F + DPTVGVDFF+RL+ + G
Sbjct: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLHSPACDPTVGVDFFSRLLEIEPG 59
>sp|Q14964|RB39A_HUMAN Ras-related protein Rab-39A OS=Homo sapiens GN=RAB39A PE=2 SV=2
Length = 217
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/59 (55%), Positives = 43/59 (72%), Gaps = 4/59 (6%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEIS----DPTVGVDFFARLVTMRDG 57
++ ++ YQFRLI+IGDSTVGKS LL FT G+F + DPTVGVDFF+RL+ + G
Sbjct: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPG 59
>sp|Q38922|RAB1B_ARATH Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2
SV=1
Length = 211
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/51 (54%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+DY F+ I+IGD+ VGKS LL FTD +F + D T+GV+F AR+VT+ DG
Sbjct: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTV-DG 52
>sp|Q3ZC27|RAB19_BOVIN Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 PE=2 SV=1
Length = 217
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 2 TVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFAR 50
TVD FDY F++ILIGDS VGK+ ++++F G + E T+GVDF R
Sbjct: 9 TVDENFDYLFKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVR 57
>sp|Q05975|RAB2_LYMST Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1
Length = 212
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+ Y F+ I+IGD+ VGKS LL FTD +F + D T+GV+F AR++T+ DG
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DG 52
>sp|Q01971|RAB2A_RABIT Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2
SV=1
Length = 212
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+ Y F+ I+IGD+ VGKS LL FTD +F + D T+GV+F AR++T+ DG
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DG 52
>sp|Q5R6B6|RAB2A_PONAB Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1
Length = 212
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+ Y F+ I+IGD+ VGKS LL FTD +F + D T+GV+F AR++T+ DG
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DG 52
>sp|P53994|RAB2A_MOUSE Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1
Length = 212
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+ Y F+ I+IGD+ VGKS LL FTD +F + D T+GV+F AR++T+ DG
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DG 52
>sp|Q4R4X6|RAB2A_MACFA Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2
SV=1
Length = 212
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+ Y F+ I+IGD+ VGKS LL FTD +F + D T+GV+F AR++T+ DG
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DG 52
>sp|P61019|RAB2A_HUMAN Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1
Length = 212
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+ Y F+ I+IGD+ VGKS LL FTD +F + D T+GV+F AR++T+ DG
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DG 52
>sp|Q90965|RAB2A_CHICK Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1
Length = 212
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+ Y F+ I+IGD+ VGKS LL FTD +F + D T+GV+F AR++T+ DG
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DG 52
>sp|P61105|RAB2A_CANFA Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1
Length = 212
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+ Y F+ I+IGD+ VGKS LL FTD +F + D T+GV+F AR++T+ DG
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DG 52
>sp|P92963|RAB1C_ARATH Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=2
SV=1
Length = 211
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54
+ Y F+ I+IGD+ VGKS LL FTD +F + D T+GV+F AR++T+
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI 50
>sp|P49104|RAB2B_MAIZE Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1
Length = 210
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54
+ Y F+ I+IGD+ VGKS LL FTD +F + D T+GV+F AR++T+
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI 50
>sp|P28188|RAD2A_ARATH Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1
SV=3
Length = 203
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
++P +DY F+L+LIGDS VGKS LL F+D + E T+GVDF R V +DG
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVE-QDG 54
>sp|P05712|RAB2A_RAT Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=1
SV=1
Length = 212
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+ Y F+ I+IGD+ VGKS LL FTD +F + D T+GV+F AR++T+ DG
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITI-DG 52
>sp|P36409|RAB2A_DICDI Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A
PE=2 SV=2
Length = 207
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 38/53 (71%)
Query: 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGA 58
++ + F+ I+IGD+ VGKS LL FTD +F + D T+GV+F AR++T+ + A
Sbjct: 1 MYSFLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKA 53
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1
PE=3 SV=1
Length = 203
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R V + DG
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVEL-DG 54
>sp|Q5M7U5|RAB19_RAT Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2
SV=1
Length = 217
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 2 TVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFAR 50
TVD DY F++ILIGDS VGK+ ++++F G ++E T+GVDF R
Sbjct: 9 TVDENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVR 57
>sp|A4D1S5|RAB19_HUMAN Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2
Length = 217
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFAR 50
D FDY F++ILIGDS VGK+ ++++F G + E T+GVDF R
Sbjct: 11 DENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVR 57
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2
SV=1
Length = 205
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 2 TVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
T++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R + + DG
Sbjct: 3 TMNPDYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DG 57
>sp|P59279|RAB2B_MOUSE Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1
Length = 216
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+ Y F+ I+IGD+ VGKS LL FTD +F + D T+GV+F AR+V + DG
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DG 52
>sp|Q8WUD1|RAB2B_HUMAN Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1
Length = 216
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+ Y F+ I+IGD+ VGKS LL FTD +F + D T+GV+F AR+V + DG
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DG 52
>sp|P31584|YPTV1_VOLCA GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1
Length = 203
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R V + DG
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVEL-DG 54
>sp|P34140|RAB1B_DICDI Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B
PE=2 SV=2
Length = 206
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFL 60
++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R + + DG +
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINL-DGKII 57
>sp|Q01890|YPT1_PHYIN Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans
GN=YPT1 PE=3 SV=1
Length = 201
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R + + DG
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DG 54
>sp|O23561|RAB1A_ARATH Ras-related protein RABB1a OS=Arabidopsis thaliana GN=RABB1A PE=2
SV=1
Length = 205
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54
+ Y+F+ I+IGD+ VGKS LL FTD +F + D T+GV+F A+ +T+
Sbjct: 3 YAYRFKYIIIGDTGVGKSCLLLKFTDKRFQAVHDLTIGVEFGAKTITI 50
>sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1
SV=3
Length = 205
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 2 TVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R + + DG
Sbjct: 3 SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DG 57
>sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3
Length = 205
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 2 TVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R + + DG
Sbjct: 3 SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DG 57
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3
Length = 205
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 2 TVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R + + DG
Sbjct: 3 SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DG 57
>sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3
Length = 205
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 2 TVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R + + DG
Sbjct: 3 SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DG 57
>sp|O23657|RABC1_ARATH Ras-related protein RABC1 OS=Arabidopsis thaliana GN=RABC1 PE=2
SV=1
Length = 212
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54
P FDY F+++LIGDS VGKSSLL FT F ++S PT+GVDF + +T+
Sbjct: 8 PEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLS-PTIGVDFKVKYLTI 56
>sp|Q06AU7|RAB1B_PIG Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1
Length = 201
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R + + DG
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DG 54
>sp|P40392|RIC1_ORYSJ Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1
PE=2 SV=2
Length = 202
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R V +DG
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVE-QDG 54
>sp|P36863|YPTV4_VOLCA GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1
Length = 213
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+ Y F+ I+IGD+ VGKS LL FTD +F + D T+GV+F AR++ + DG
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINI-DG 52
>sp|Q39570|YPTC4_CHLRE GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4
PE=3 SV=1
Length = 213
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+ Y F+ I+IGD+ VGKS LL FTD +F + D T+GV+F AR++ + DG
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINI-DG 52
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3
Length = 205
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 2 TVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R + + DG
Sbjct: 3 SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DG 57
>sp|Q9FK68|RAA1C_ARATH Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1
SV=1
Length = 216
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
D +DY F+++LIGDS VGKS+LL FT +F+ S T+GV+F R + + D
Sbjct: 7 DDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDD 59
>sp|Q2HJH2|RAB1B_BOVIN Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1
Length = 201
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R + + DG
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DG 54
>sp|Q5RE13|RAB1B_PONAB Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1
Length = 201
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R + + DG
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DG 54
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1
Length = 201
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R + + DG
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DG 54
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1
Length = 201
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R + + DG
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DG 54
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1
SV=1
Length = 201
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R + + DG
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DG 54
>sp|Q4R8X3|RAB1B_MACFA Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2
SV=1
Length = 201
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R + + DG
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DG 54
>sp|P33723|YPT1_NEUCR GTP-binding protein ypt1 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ypt-1 PE=3 SV=1
Length = 203
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R + + DG
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DG 54
>sp|P22125|RAB1_DIPOM Ras-related protein ORAB-1 OS=Diplobatis ommata PE=2 SV=1
Length = 202
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R + + DG
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DG 54
>sp|P49103|RAB2A_MAIZE Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1
Length = 209
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54
+ Y F+ I+IGD+ VGKS LL FTD +F + D T+GV+F AR++ +
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINI 50
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.333 0.149 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,832,069
Number of Sequences: 539616
Number of extensions: 675730
Number of successful extensions: 5910
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 5228
Number of HSP's gapped (non-prelim): 710
length of query: 64
length of database: 191,569,459
effective HSP length: 36
effective length of query: 28
effective length of database: 172,143,283
effective search space: 4820011924
effective search space used: 4820011924
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)