Query psy43
Match_columns 64
No_of_seqs 180 out of 1293
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 22:01:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy43.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/43hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 99.9 3.6E-21 7.9E-26 105.7 7.4 61 3-64 2-62 (205)
2 KOG0094|consensus 99.8 5.8E-18 1.3E-22 93.4 7.7 58 6-64 18-75 (221)
3 KOG0078|consensus 99.7 1.5E-17 3.3E-22 92.2 8.0 58 6-64 8-65 (207)
4 KOG0080|consensus 99.7 3.1E-17 6.7E-22 88.6 8.2 59 5-64 6-64 (209)
5 KOG0394|consensus 99.7 7.9E-18 1.7E-22 92.2 4.9 58 6-64 5-62 (210)
6 KOG0098|consensus 99.7 4.9E-17 1.1E-21 89.3 7.4 58 6-64 2-59 (216)
7 KOG0095|consensus 99.7 6.1E-17 1.3E-21 86.9 7.0 59 5-64 2-60 (213)
8 KOG0086|consensus 99.7 5E-17 1.1E-21 87.4 5.2 62 2-64 1-62 (214)
9 KOG0087|consensus 99.7 1.5E-16 3.3E-21 88.4 7.2 59 5-64 9-67 (222)
10 KOG0079|consensus 99.7 2.3E-17 5E-22 88.2 3.5 59 5-64 3-61 (198)
11 KOG0092|consensus 99.7 2.7E-16 5.7E-21 86.5 6.3 56 8-64 3-58 (200)
12 cd04128 Spg1 Spg1p. Spg1p (se 99.6 2E-15 4.4E-20 82.5 7.7 53 11-64 1-53 (182)
13 KOG0093|consensus 99.6 3.6E-15 7.7E-20 79.8 6.1 60 4-64 15-74 (193)
14 cd04121 Rab40 Rab40 subfamily. 99.6 1.2E-14 2.6E-19 80.1 8.4 57 7-64 3-59 (189)
15 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 1.1E-14 2.3E-19 79.8 8.0 56 7-64 2-57 (182)
16 KOG0091|consensus 99.6 7E-16 1.5E-20 83.6 2.4 60 5-64 3-62 (213)
17 cd04120 Rab12 Rab12 subfamily. 99.6 1.5E-14 3.1E-19 80.5 7.7 53 11-64 1-53 (202)
18 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 2.1E-14 4.7E-19 77.6 7.9 52 12-64 2-53 (170)
19 cd01867 Rab8_Rab10_Rab13_like 99.6 1.8E-14 3.8E-19 77.3 7.5 55 9-64 2-56 (167)
20 cd01892 Miro2 Miro2 subfamily. 99.6 2E-14 4.4E-19 77.5 7.6 55 8-63 2-57 (169)
21 cd04119 RJL RJL (RabJ-Like) su 99.6 2.6E-14 5.6E-19 75.9 7.6 53 11-64 1-53 (168)
22 cd04122 Rab14 Rab14 subfamily. 99.6 2.8E-14 6.1E-19 76.3 7.8 54 10-64 2-55 (166)
23 cd04131 Rnd Rnd subfamily. Th 99.6 2.8E-14 6.1E-19 77.8 7.7 53 10-64 1-53 (178)
24 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 2.6E-14 5.7E-19 78.8 7.7 53 11-64 1-54 (201)
25 cd04117 Rab15 Rab15 subfamily. 99.6 3.3E-14 7.3E-19 76.0 7.8 53 11-64 1-53 (161)
26 PF00071 Ras: Ras family; Int 99.6 2.4E-14 5.3E-19 76.0 7.0 52 12-64 1-52 (162)
27 cd01875 RhoG RhoG subfamily. 99.6 3.7E-14 8.1E-19 77.8 7.8 53 10-64 3-55 (191)
28 cd04110 Rab35 Rab35 subfamily. 99.6 4.3E-14 9.3E-19 78.0 8.0 56 7-63 3-58 (199)
29 PLN03110 Rab GTPase; Provision 99.6 7.7E-14 1.7E-18 77.9 9.1 57 7-64 9-65 (216)
30 KOG0097|consensus 99.6 1.6E-14 3.6E-19 77.1 5.9 61 3-64 4-64 (215)
31 PLN03071 GTP-binding nuclear p 99.6 5.3E-14 1.1E-18 78.8 8.3 56 8-64 11-66 (219)
32 cd04116 Rab9 Rab9 subfamily. 99.6 7.6E-14 1.6E-18 74.8 8.6 57 7-64 2-58 (170)
33 cd04109 Rab28 Rab28 subfamily. 99.6 4E-14 8.7E-19 78.9 7.7 53 11-63 1-53 (215)
34 cd04133 Rop_like Rop subfamily 99.6 4.2E-14 9.2E-19 77.1 7.6 52 11-64 2-53 (176)
35 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 6.9E-14 1.5E-18 79.3 8.4 57 6-64 9-65 (232)
36 cd04111 Rab39 Rab39 subfamily. 99.5 4.9E-14 1.1E-18 78.5 7.6 56 9-64 1-56 (211)
37 cd01874 Cdc42 Cdc42 subfamily. 99.5 7.1E-14 1.5E-18 75.9 7.7 52 11-64 2-53 (175)
38 cd01865 Rab3 Rab3 subfamily. 99.5 9E-14 1.9E-18 74.4 8.0 53 11-64 2-54 (165)
39 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 8.9E-14 1.9E-18 74.3 7.9 53 10-63 2-54 (166)
40 PTZ00132 GTP-binding nuclear p 99.5 1E-13 2.3E-18 77.1 8.3 58 5-63 4-61 (215)
41 cd01864 Rab19 Rab19 subfamily. 99.5 1.2E-13 2.5E-18 73.8 8.0 54 9-63 2-55 (165)
42 PLN03108 Rab family protein; P 99.5 1E-13 2.2E-18 77.2 7.9 56 8-64 4-59 (210)
43 cd01868 Rab11_like Rab11-like. 99.5 1.3E-13 2.8E-18 73.5 8.0 54 9-63 2-55 (165)
44 cd04125 RabA_like RabA-like su 99.5 1.2E-13 2.5E-18 75.4 7.9 53 11-64 1-53 (188)
45 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 7.2E-14 1.6E-18 78.7 7.1 53 10-64 1-53 (222)
46 cd04115 Rab33B_Rab33A Rab33B/R 99.5 1.7E-13 3.6E-18 73.7 7.9 54 10-64 2-55 (170)
47 cd04102 RabL3 RabL3 (Rab-like3 99.5 1.4E-13 3.1E-18 76.6 7.5 54 11-64 1-58 (202)
48 cd04118 Rab24 Rab24 subfamily. 99.5 1.8E-13 3.9E-18 74.7 7.7 53 11-64 1-54 (193)
49 cd04136 Rap_like Rap-like subf 99.5 1.1E-13 2.3E-18 73.5 6.6 52 10-63 1-52 (163)
50 cd04142 RRP22 RRP22 subfamily. 99.5 9.8E-14 2.1E-18 76.8 6.6 52 11-63 1-52 (198)
51 cd04127 Rab27A Rab27a subfamil 99.5 2.2E-13 4.7E-18 73.6 7.8 47 8-54 2-48 (180)
52 cd01866 Rab2 Rab2 subfamily. 99.5 3.2E-13 6.9E-18 72.5 8.1 55 8-63 2-56 (168)
53 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.5 2.1E-13 4.6E-18 73.8 7.3 53 10-64 2-54 (172)
54 cd04138 H_N_K_Ras_like H-Ras/N 99.5 2.2E-13 4.7E-18 72.0 7.1 52 10-63 1-52 (162)
55 PLN00023 GTP-binding protein; 99.5 2.3E-13 5E-18 80.3 7.7 48 7-54 18-65 (334)
56 cd04124 RabL2 RabL2 subfamily. 99.5 3.5E-13 7.6E-18 72.0 7.8 53 11-64 1-53 (161)
57 cd00877 Ran Ran (Ras-related n 99.5 3.6E-13 7.7E-18 72.4 7.7 52 11-63 1-52 (166)
58 cd04113 Rab4 Rab4 subfamily. 99.5 3.9E-13 8.5E-18 71.4 7.7 53 11-64 1-53 (161)
59 cd01871 Rac1_like Rac1-like su 99.5 4.1E-13 8.9E-18 72.8 7.5 52 11-64 2-53 (174)
60 cd04106 Rab23_lke Rab23-like s 99.5 5.2E-13 1.1E-17 70.8 7.7 52 11-63 1-54 (162)
61 cd04176 Rap2 Rap2 subgroup. T 99.5 3.5E-13 7.7E-18 71.7 6.9 52 10-63 1-52 (163)
62 PTZ00369 Ras-like protein; Pro 99.5 4E-13 8.7E-18 73.5 7.1 54 9-64 4-57 (189)
63 cd04143 Rhes_like Rhes_like su 99.5 2.5E-13 5.5E-18 77.5 6.4 52 11-64 1-52 (247)
64 cd01861 Rab6 Rab6 subfamily. 99.5 7.7E-13 1.7E-17 70.1 7.7 52 11-63 1-52 (161)
65 cd04175 Rap1 Rap1 subgroup. T 99.5 4.7E-13 1E-17 71.4 6.9 52 10-63 1-52 (164)
66 cd01862 Rab7 Rab7 subfamily. 99.5 7.4E-13 1.6E-17 70.7 7.7 52 11-63 1-52 (172)
67 cd01860 Rab5_related Rab5-rela 99.5 7.9E-13 1.7E-17 70.2 7.7 53 10-63 1-53 (163)
68 cd04101 RabL4 RabL4 (Rab-like4 99.4 1.1E-12 2.4E-17 69.7 7.7 53 11-63 1-55 (164)
69 cd04114 Rab30 Rab30 subfamily. 99.4 2.1E-12 4.7E-17 68.9 8.7 56 7-63 4-59 (169)
70 smart00175 RAB Rab subfamily o 99.4 1.4E-12 3E-17 69.1 7.9 52 11-63 1-52 (164)
71 cd04134 Rho3 Rho3 subfamily. 99.4 1.2E-12 2.7E-17 71.6 7.4 52 11-64 1-52 (189)
72 cd04103 Centaurin_gamma Centau 99.4 1E-12 2.3E-17 70.4 6.9 51 11-64 1-51 (158)
73 PLN03118 Rab family protein; P 99.4 2.7E-12 5.9E-17 71.3 8.4 57 5-63 9-65 (211)
74 cd04148 RGK RGK subfamily. Th 99.4 1.4E-12 2.9E-17 73.2 6.9 53 11-64 1-54 (221)
75 cd04112 Rab26 Rab26 subfamily. 99.4 1.8E-12 3.9E-17 71.0 7.3 53 11-64 1-54 (191)
76 smart00173 RAS Ras subfamily o 99.4 1.3E-12 2.9E-17 69.5 6.5 51 11-63 1-51 (164)
77 cd01870 RhoA_like RhoA-like su 99.4 2E-12 4.4E-17 69.4 7.0 51 11-63 2-52 (175)
78 cd04130 Wrch_1 Wrch-1 subfamil 99.4 2.7E-12 5.9E-17 69.2 7.4 52 11-64 1-52 (173)
79 cd01863 Rab18 Rab18 subfamily. 99.4 3.3E-12 7.1E-17 67.8 7.4 52 11-63 1-52 (161)
80 cd04135 Tc10 TC10 subfamily. 99.4 3.8E-12 8.1E-17 68.3 7.5 51 11-63 1-51 (174)
81 cd04140 ARHI_like ARHI subfami 99.4 3E-12 6.6E-17 68.5 7.1 51 11-63 2-52 (165)
82 KOG0395|consensus 99.4 5.2E-13 1.1E-17 74.1 3.9 54 9-64 2-55 (196)
83 cd04145 M_R_Ras_like M-Ras/R-R 99.4 4.8E-12 1E-16 67.2 7.3 52 10-63 2-53 (164)
84 cd04144 Ras2 Ras2 subfamily. 99.4 2.2E-12 4.7E-17 70.6 6.1 51 12-64 1-51 (190)
85 cd04132 Rho4_like Rho4-like su 99.4 5.3E-12 1.1E-16 68.6 7.2 53 11-64 1-53 (187)
86 cd04177 RSR1 RSR1 subgroup. R 99.4 5.1E-12 1.1E-16 67.8 6.9 52 10-63 1-52 (168)
87 COG1100 GTPase SAR1 and relate 99.4 7.6E-12 1.7E-16 69.3 7.6 53 10-63 5-57 (219)
88 cd00154 Rab Rab family. Rab G 99.4 1.2E-11 2.5E-16 64.7 7.7 52 11-63 1-52 (159)
89 cd04146 RERG_RasL11_like RERG/ 99.3 4.8E-12 1E-16 67.6 5.4 51 12-64 1-51 (165)
90 cd04123 Rab21 Rab21 subfamily. 99.3 2E-11 4.4E-16 64.4 7.6 52 11-63 1-52 (162)
91 smart00174 RHO Rho (Ras homolo 99.3 1.4E-11 2.9E-16 66.2 6.9 50 13-64 1-50 (174)
92 KOG0393|consensus 99.3 8.8E-13 1.9E-17 73.2 2.0 56 8-64 2-57 (198)
93 cd04139 RalA_RalB RalA/RalB su 99.3 1.5E-11 3.2E-16 65.1 6.6 51 11-63 1-51 (164)
94 KOG0081|consensus 99.3 7.3E-14 1.6E-18 75.7 -2.5 50 5-54 4-53 (219)
95 smart00176 RAN Ran (Ras-relate 99.3 1.5E-11 3.3E-16 68.3 6.6 48 16-64 1-48 (200)
96 cd00157 Rho Rho (Ras homology) 99.3 3.2E-11 7E-16 64.3 7.6 51 11-63 1-51 (171)
97 TIGR00231 small_GTP small GTP- 99.3 5.5E-11 1.2E-15 61.8 7.7 52 10-62 1-52 (161)
98 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 2E-11 4.4E-16 66.6 6.2 53 10-63 3-55 (183)
99 cd01873 RhoBTB RhoBTB subfamil 99.3 3E-11 6.5E-16 66.9 6.8 54 10-64 2-70 (195)
100 cd04147 Ras_dva Ras-dva subfam 99.2 3.3E-11 7.2E-16 66.4 6.1 50 12-63 1-50 (198)
101 cd04129 Rho2 Rho2 subfamily. 99.2 6.7E-11 1.5E-15 64.6 7.2 51 11-63 2-52 (187)
102 cd00876 Ras Ras family. The R 99.2 5.2E-11 1.1E-15 62.7 6.4 50 12-63 1-50 (160)
103 KOG0088|consensus 99.2 3.9E-12 8.5E-17 69.0 1.9 59 5-64 8-66 (218)
104 cd04137 RheB Rheb (Ras Homolog 99.2 7E-11 1.5E-15 63.8 6.5 51 11-63 2-52 (180)
105 cd01893 Miro1 Miro1 subfamily. 99.2 2.3E-10 4.9E-15 61.3 6.3 50 11-63 1-50 (166)
106 cd04162 Arl9_Arfrp2_like Arl9/ 99.1 8E-11 1.7E-15 63.3 4.4 34 13-46 2-35 (164)
107 PTZ00133 ADP-ribosylation fact 99.1 3.1E-10 6.7E-15 62.0 6.6 38 9-47 16-53 (182)
108 cd01850 CDC_Septin CDC/Septin. 99.1 7.5E-10 1.6E-14 64.2 8.2 54 9-63 3-66 (276)
109 TIGR02528 EutP ethanolamine ut 99.1 1.4E-10 3E-15 60.6 4.6 41 12-54 2-42 (142)
110 KOG0083|consensus 99.1 4.5E-12 9.9E-17 67.2 -1.4 49 15-64 2-51 (192)
111 PLN00223 ADP-ribosylation fact 99.1 6.4E-10 1.4E-14 60.7 6.9 49 8-60 15-63 (181)
112 smart00177 ARF ARF-like small 99.1 5.8E-10 1.2E-14 60.5 6.7 40 8-48 11-50 (175)
113 cd04150 Arf1_5_like Arf1-Arf5- 99.1 6.9E-10 1.5E-14 59.3 6.6 36 11-47 1-36 (159)
114 cd04154 Arl2 Arl2 subfamily. 99.1 7.4E-10 1.6E-14 59.7 6.7 50 7-60 11-60 (173)
115 cd04126 Rab20 Rab20 subfamily. 99.1 4.1E-10 9E-15 63.5 5.8 39 11-50 1-39 (220)
116 cd04149 Arf6 Arf6 subfamily. 99.1 7.1E-10 1.5E-14 59.8 6.4 38 9-47 8-45 (168)
117 cd00879 Sar1 Sar1 subfamily. 99.1 8.7E-10 1.9E-14 60.0 6.6 50 8-61 17-66 (190)
118 cd04161 Arl2l1_Arl13_like Arl2 99.1 8.8E-10 1.9E-14 59.3 6.5 45 12-60 1-45 (167)
119 cd04158 ARD1 ARD1 subfamily. 99.1 1.1E-09 2.4E-14 58.9 6.9 36 12-48 1-36 (169)
120 PF08477 Miro: Miro-like prote 99.1 6.9E-10 1.5E-14 56.4 5.8 25 12-36 1-25 (119)
121 cd04159 Arl10_like Arl10-like 99.0 1.4E-09 3.1E-14 56.9 6.4 37 12-48 1-37 (159)
122 KOG4252|consensus 99.0 5.6E-11 1.2E-15 65.7 1.0 53 5-58 15-67 (246)
123 cd04157 Arl6 Arl6 subfamily. 99.0 1.6E-09 3.5E-14 57.3 5.9 35 12-46 1-36 (162)
124 PF00025 Arf: ADP-ribosylation 99.0 1.2E-09 2.6E-14 59.4 5.4 52 7-62 11-62 (175)
125 cd04155 Arl3 Arl3 subfamily. 99.0 2E-09 4.3E-14 57.7 6.1 49 8-60 12-60 (173)
126 smart00178 SAR Sar1p-like memb 99.0 2.8E-09 6.1E-14 58.2 6.7 38 7-45 14-51 (184)
127 KOG0096|consensus 99.0 1.7E-09 3.7E-14 60.0 5.6 54 1-54 1-54 (216)
128 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.0 4.2E-09 9.1E-14 56.9 6.6 38 9-47 14-51 (174)
129 cd04156 ARLTS1 ARLTS1 subfamil 98.9 7.7E-09 1.7E-13 54.7 6.1 35 12-47 1-35 (160)
130 PRK00454 engB GTP-binding prot 98.9 5.5E-09 1.2E-13 57.0 5.6 39 6-44 20-58 (196)
131 cd04151 Arl1 Arl1 subfamily. 98.9 7.1E-09 1.5E-13 55.0 5.9 35 12-47 1-35 (158)
132 cd04160 Arfrp1 Arfrp1 subfamil 98.9 8.9E-09 1.9E-13 54.8 6.0 47 12-61 1-53 (167)
133 TIGR03598 GTPase_YsxC ribosome 98.9 2E-08 4.3E-13 54.6 7.2 38 7-44 15-52 (179)
134 cd00878 Arf_Arl Arf (ADP-ribos 98.9 1.2E-08 2.6E-13 53.9 6.2 35 12-47 1-35 (158)
135 smart00010 small_GTPase Small 98.9 3.1E-09 6.7E-14 54.1 3.4 34 11-44 1-35 (124)
136 cd01878 HflX HflX subfamily. 98.9 1.4E-08 3.1E-13 55.9 6.3 29 8-36 39-67 (204)
137 PRK04213 GTP-binding protein; 98.9 1.1E-08 2.4E-13 56.2 5.7 37 8-44 7-43 (201)
138 PF02421 FeoB_N: Ferrous iron 98.8 1.2E-08 2.5E-13 55.2 5.4 51 11-62 1-51 (156)
139 TIGR00450 mnmE_trmE_thdF tRNA 98.8 4.5E-08 9.7E-13 60.0 7.9 52 9-62 202-255 (442)
140 cd04164 trmE TrmE (MnmE, ThdF, 98.8 4.5E-08 9.7E-13 51.2 6.8 49 11-60 2-51 (157)
141 cd01897 NOG NOG1 is a nucleola 98.8 3.6E-08 7.8E-13 52.5 6.4 25 12-36 2-26 (168)
142 cd04171 SelB SelB subfamily. 98.8 3.6E-08 7.8E-13 52.1 6.2 43 12-54 2-47 (164)
143 KOG1673|consensus 98.8 4.2E-09 9.2E-14 57.2 2.4 56 8-64 18-73 (205)
144 KOG0073|consensus 98.8 3.6E-08 7.8E-13 53.7 5.9 52 7-62 13-64 (185)
145 cd01876 YihA_EngB The YihA (En 98.8 3.4E-08 7.3E-13 52.0 5.8 42 12-53 1-42 (170)
146 cd01891 TypA_BipA TypA (tyrosi 98.8 9.7E-09 2.1E-13 56.4 3.7 28 11-38 3-32 (194)
147 cd01879 FeoB Ferrous iron tran 98.8 2.5E-08 5.4E-13 52.5 4.7 46 15-61 1-46 (158)
148 PRK15494 era GTPase Era; Provi 98.7 7E-08 1.5E-12 57.4 6.9 50 8-60 50-102 (339)
149 PRK03003 GTP-binding protein D 98.7 5.1E-08 1.1E-12 60.0 6.4 53 9-62 210-263 (472)
150 cd01895 EngA2 EngA2 subfamily. 98.7 7.7E-08 1.7E-12 50.9 6.0 26 10-35 2-27 (174)
151 TIGR03156 GTP_HflX GTP-binding 98.7 6E-08 1.3E-12 58.0 6.0 52 9-62 188-241 (351)
152 cd01887 IF2_eIF5B IF2/eIF5B (i 98.7 9.5E-08 2.1E-12 50.8 6.3 32 12-43 2-33 (168)
153 PF01926 MMR_HSR1: 50S ribosom 98.7 1.2E-07 2.7E-12 48.2 5.9 23 12-34 1-23 (116)
154 PRK03003 GTP-binding protein D 98.7 1.7E-07 3.6E-12 57.8 7.1 52 10-62 38-90 (472)
155 KOG4423|consensus 98.7 2.4E-11 5.2E-16 67.2 -8.7 52 7-58 22-73 (229)
156 PRK05291 trmE tRNA modificatio 98.7 1.7E-07 3.7E-12 57.5 6.9 52 9-62 214-267 (449)
157 PF00735 Septin: Septin; Inte 98.6 3.3E-07 7.2E-12 53.5 7.7 54 9-63 3-66 (281)
158 KOG0070|consensus 98.6 2.5E-08 5.5E-13 54.8 2.7 51 7-61 14-64 (181)
159 cd04104 p47_IIGP_like p47 (47- 98.6 5.6E-08 1.2E-12 53.8 4.1 28 10-37 1-28 (197)
160 cd04105 SR_beta Signal recogni 98.6 1.6E-07 3.4E-12 52.3 5.6 31 12-42 2-32 (203)
161 PF10662 PduV-EutP: Ethanolami 98.6 1.4E-07 3E-12 50.4 4.9 41 12-54 3-43 (143)
162 cd00882 Ras_like_GTPase Ras-li 98.6 1.9E-07 4.1E-12 47.8 5.0 39 15-54 1-40 (157)
163 PRK00093 GTP-binding protein D 98.6 2.8E-07 6.1E-12 56.0 6.4 50 11-61 2-52 (435)
164 cd01853 Toc34_like Toc34-like 98.6 8.1E-07 1.7E-11 51.1 7.8 29 7-35 28-56 (249)
165 cd01898 Obg Obg subfamily. Th 98.6 3E-07 6.5E-12 49.0 5.4 23 12-34 2-24 (170)
166 cd01896 DRG The developmentall 98.6 5.9E-07 1.3E-11 51.0 6.8 23 12-34 2-24 (233)
167 TIGR03594 GTPase_EngA ribosome 98.6 3.4E-07 7.5E-12 55.4 6.2 50 12-62 1-51 (429)
168 cd04163 Era Era subfamily. Er 98.5 8.5E-07 1.8E-11 46.5 6.8 26 10-35 3-28 (168)
169 KOG0071|consensus 98.5 4.3E-07 9.3E-12 48.8 4.8 49 8-60 15-63 (180)
170 PRK11058 GTPase HflX; Provisio 98.5 4.9E-07 1.1E-11 55.4 5.7 44 11-54 198-241 (426)
171 PRK09518 bifunctional cytidyla 98.5 6.5E-07 1.4E-11 57.6 6.4 52 9-62 449-502 (712)
172 cd01894 EngA1 EngA1 subfamily. 98.5 5.5E-07 1.2E-11 47.1 5.2 45 14-60 1-47 (157)
173 COG0486 ThdF Predicted GTPase 98.5 9.6E-07 2.1E-11 54.4 6.7 52 9-62 216-269 (454)
174 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 1E-06 2.3E-11 46.4 6.0 42 12-54 85-126 (141)
175 PRK09554 feoB ferrous iron tra 98.5 1.6E-06 3.4E-11 56.4 7.8 51 10-61 3-53 (772)
176 TIGR00436 era GTP-binding prot 98.5 8.3E-07 1.8E-11 51.2 5.9 25 12-36 2-26 (270)
177 TIGR03594 GTPase_EngA ribosome 98.4 1.9E-06 4.1E-11 52.3 7.4 53 8-61 170-223 (429)
178 TIGR00991 3a0901s02IAP34 GTP-b 98.4 2.7E-06 5.9E-11 50.4 7.8 28 7-34 35-62 (313)
179 cd01852 AIG1 AIG1 (avrRpt2-ind 98.4 1.2E-06 2.7E-11 48.2 6.1 25 11-35 1-25 (196)
180 cd01881 Obg_like The Obg-like 98.4 5.7E-07 1.2E-11 48.0 4.5 21 15-35 1-21 (176)
181 PRK00093 GTP-binding protein D 98.4 2.4E-06 5.1E-11 52.0 7.7 54 8-62 171-225 (435)
182 cd01856 YlqF YlqF. Proteins o 98.4 1.7E-06 3.8E-11 46.8 6.2 45 9-54 114-158 (171)
183 COG0218 Predicted GTPase [Gene 98.4 2E-06 4.4E-11 48.1 6.3 27 8-34 22-48 (200)
184 PF04548 AIG1: AIG1 family; I 98.4 2.7E-06 5.8E-11 47.7 6.7 49 11-62 1-53 (212)
185 PRK09518 bifunctional cytidyla 98.4 3.8E-06 8.2E-11 54.1 7.8 52 9-61 274-326 (712)
186 cd01890 LepA LepA subfamily. 98.4 1.1E-06 2.4E-11 47.2 4.7 21 12-32 2-22 (179)
187 PF03193 DUF258: Protein of un 98.4 5.5E-07 1.2E-11 49.0 3.3 24 11-34 36-59 (161)
188 COG0370 FeoB Fe2+ transport sy 98.4 3.3E-06 7.1E-11 54.0 7.1 52 10-62 3-54 (653)
189 cd01889 SelB_euk SelB subfamil 98.3 1.2E-06 2.5E-11 48.1 4.5 22 11-32 1-22 (192)
190 KOG1707|consensus 98.3 1.1E-06 2.3E-11 55.5 4.3 34 6-39 5-38 (625)
191 cd01859 MJ1464 MJ1464. This f 98.3 3.8E-06 8.1E-11 44.7 5.9 45 9-54 100-144 (156)
192 cd00881 GTP_translation_factor 98.3 4.2E-06 9.1E-11 45.0 5.9 27 12-38 1-27 (189)
193 PRK00089 era GTPase Era; Revie 98.3 6.2E-06 1.3E-10 47.9 6.8 27 9-35 4-30 (292)
194 cd01858 NGP_1 NGP-1. Autoanti 98.3 9.3E-06 2E-10 43.4 6.8 27 9-35 101-127 (157)
195 COG1116 TauB ABC-type nitrate/ 98.3 9.1E-07 2E-11 50.9 3.0 23 12-34 31-53 (248)
196 TIGR00437 feoB ferrous iron tr 98.3 5E-06 1.1E-10 52.8 6.5 44 17-61 1-44 (591)
197 KOG3859|consensus 98.3 2.4E-06 5.3E-11 50.5 4.8 58 6-64 38-99 (406)
198 KOG1191|consensus 98.3 3.1E-06 6.8E-11 52.7 5.4 53 9-62 267-320 (531)
199 TIGR00487 IF-2 translation ini 98.3 8.2E-06 1.8E-10 51.8 7.3 46 9-54 86-131 (587)
200 COG3839 MalK ABC-type sugar tr 98.2 1.4E-06 3E-11 52.1 3.4 25 12-36 31-55 (338)
201 COG5019 CDC3 Septin family pro 98.2 8.1E-06 1.7E-10 49.3 6.3 55 8-63 21-85 (373)
202 KOG2655|consensus 98.2 8.8E-06 1.9E-10 49.1 6.1 55 8-63 19-82 (366)
203 TIGR00475 selB selenocysteine- 98.2 1.4E-05 2.9E-10 50.7 6.9 48 12-60 2-52 (581)
204 PRK15467 ethanolamine utilizat 98.2 2.6E-06 5.6E-11 45.7 3.2 22 12-33 3-24 (158)
205 COG1160 Predicted GTPases [Gen 98.2 7.2E-06 1.6E-10 50.5 5.4 53 9-62 177-230 (444)
206 PRK12296 obgE GTPase CgtA; Rev 98.2 1.1E-05 2.5E-10 50.4 6.3 26 10-35 159-184 (500)
207 COG3842 PotA ABC-type spermidi 98.1 3.1E-06 6.8E-11 50.9 3.6 24 13-36 34-57 (352)
208 COG1160 Predicted GTPases [Gen 98.1 5.7E-06 1.2E-10 50.9 4.8 50 11-61 4-54 (444)
209 TIGR02729 Obg_CgtA Obg family 98.1 1.4E-05 3.1E-10 47.6 6.3 25 10-34 157-181 (329)
210 COG1117 PstB ABC-type phosphat 98.1 7E-06 1.5E-10 46.9 4.7 22 12-33 35-56 (253)
211 PRK12299 obgE GTPase CgtA; Rev 98.1 1.9E-05 4.1E-10 47.2 6.7 24 11-34 159-182 (335)
212 PF13207 AAA_17: AAA domain; P 98.1 2.9E-06 6.2E-11 43.3 2.8 22 12-33 1-22 (121)
213 PF03266 NTPase_1: NTPase; In 98.1 4E-06 8.7E-11 45.7 3.4 46 12-61 1-46 (168)
214 PRK09563 rbgA GTPase YlqF; Rev 98.1 3.9E-05 8.4E-10 44.8 7.6 27 9-35 120-146 (287)
215 KOG3883|consensus 98.1 1E-05 2.2E-10 44.1 4.8 50 9-59 8-59 (198)
216 cd04178 Nucleostemin_like Nucl 98.1 2.6E-05 5.7E-10 42.7 6.5 26 10-35 117-142 (172)
217 PF09439 SRPRB: Signal recogni 98.1 3.4E-06 7.4E-11 46.7 3.0 27 11-37 4-30 (181)
218 KOG0075|consensus 98.1 6.3E-07 1.4E-11 48.4 0.1 52 8-62 18-69 (186)
219 cd01899 Ygr210 Ygr210 subfamil 98.1 6.6E-06 1.4E-10 48.9 4.3 36 13-48 1-42 (318)
220 COG4525 TauB ABC-type taurine 98.1 4.6E-06 1E-10 47.3 3.3 23 12-34 33-55 (259)
221 TIGR03596 GTPase_YlqF ribosome 98.1 3.3E-05 7.1E-10 44.9 7.0 27 9-35 117-143 (276)
222 PRK08118 topology modulation p 98.1 4.1E-06 9E-11 45.5 3.0 23 11-33 2-24 (167)
223 PRK07261 topology modulation p 98.1 4.8E-06 1E-10 45.4 3.1 23 11-33 1-23 (171)
224 PRK12297 obgE GTPase CgtA; Rev 98.1 2.9E-05 6.3E-10 47.8 6.7 24 11-34 159-182 (424)
225 KOG0074|consensus 98.1 1.1E-05 2.5E-10 43.5 4.4 47 7-57 14-60 (185)
226 COG0563 Adk Adenylate kinase a 98.1 4.8E-06 1E-10 45.8 3.1 23 11-33 1-23 (178)
227 PRK12288 GTPase RsgA; Reviewed 98.1 3.7E-06 8.1E-11 50.4 2.8 23 12-34 207-229 (347)
228 PRK05306 infB translation init 98.1 3.1E-05 6.8E-10 50.7 7.1 53 8-61 288-340 (787)
229 PF00350 Dynamin_N: Dynamin fa 98.1 1.4E-05 3E-10 42.7 4.7 23 13-35 1-23 (168)
230 TIGR00993 3a0901s04IAP86 chlor 98.0 4.5E-05 9.7E-10 49.5 7.5 27 8-34 116-142 (763)
231 PRK12298 obgE GTPase CgtA; Rev 98.0 2.9E-05 6.3E-10 47.3 6.3 24 11-34 160-183 (390)
232 COG1126 GlnQ ABC-type polar am 98.0 7.6E-06 1.6E-10 46.7 3.5 25 12-36 30-54 (240)
233 COG1159 Era GTPase [General fu 98.0 1E-05 2.2E-10 47.6 4.1 29 8-36 4-32 (298)
234 cd04165 GTPBP1_like GTPBP1-lik 98.0 7.3E-06 1.6E-10 46.4 3.4 26 12-37 1-26 (224)
235 COG1618 Predicted nucleotide k 98.0 2.1E-05 4.5E-10 43.1 4.9 51 9-63 4-54 (179)
236 PTZ00258 GTP-binding protein; 98.0 1.7E-05 3.7E-10 48.3 5.1 28 8-35 19-46 (390)
237 COG1136 SalX ABC-type antimicr 98.0 6.2E-06 1.3E-10 47.0 3.0 23 12-34 33-55 (226)
238 PRK09602 translation-associate 98.0 2.3E-05 5E-10 47.8 5.5 26 11-36 2-27 (396)
239 PRK10078 ribose 1,5-bisphospho 98.0 6.9E-06 1.5E-10 45.1 3.0 22 12-33 4-25 (186)
240 PF00005 ABC_tran: ABC transpo 98.0 6.9E-06 1.5E-10 42.7 2.6 23 12-34 13-35 (137)
241 cd03260 ABC_PstB_phosphate_tra 98.0 3.1E-05 6.6E-10 43.5 5.3 23 12-34 28-50 (227)
242 cd00880 Era_like Era (E. coli 98.0 3E-05 6.5E-10 40.0 4.9 22 15-36 1-22 (163)
243 COG1120 FepC ABC-type cobalami 98.0 8E-06 1.7E-10 47.4 3.0 21 12-32 30-50 (258)
244 PRK14738 gmk guanylate kinase; 98.0 1.8E-05 4E-10 44.2 4.3 27 7-33 10-36 (206)
245 PF13671 AAA_33: AAA domain; P 98.0 7.8E-06 1.7E-10 42.6 2.7 20 13-32 2-21 (143)
246 PRK12289 GTPase RsgA; Reviewed 98.0 7.4E-06 1.6E-10 49.3 2.8 23 12-34 174-196 (352)
247 TIGR00157 ribosome small subun 98.0 8E-06 1.7E-10 46.8 2.8 24 11-34 121-144 (245)
248 PF13521 AAA_28: AAA domain; P 98.0 9.2E-06 2E-10 43.6 2.9 22 12-33 1-22 (163)
249 COG1162 Predicted GTPases [Gen 98.0 6.3E-06 1.4E-10 48.7 2.3 21 12-32 166-186 (301)
250 cd03238 ABC_UvrA The excision 97.9 1.1E-05 2.4E-10 44.3 3.0 21 11-31 22-42 (176)
251 PRK09601 GTP-binding protein Y 97.9 3.3E-05 7.2E-10 46.8 5.2 24 11-34 3-26 (364)
252 COG0194 Gmk Guanylate kinase [ 97.9 1.2E-05 2.5E-10 44.8 2.8 24 11-34 5-28 (191)
253 PF05049 IIGP: Interferon-indu 97.9 1.5E-05 3.2E-10 48.4 3.4 24 9-32 34-57 (376)
254 TIGR02322 phosphon_PhnN phosph 97.9 1.4E-05 2.9E-10 43.4 3.0 22 12-33 3-24 (179)
255 cd00071 GMPK Guanosine monopho 97.9 1.4E-05 3.1E-10 42.1 3.0 21 13-33 2-22 (137)
256 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.9 1.5E-05 3.2E-10 44.5 3.2 23 12-34 32-54 (218)
257 PF00004 AAA: ATPase family as 97.9 1.4E-05 3E-10 40.9 2.9 21 13-33 1-21 (132)
258 smart00382 AAA ATPases associa 97.9 1.8E-05 4E-10 40.1 3.2 26 11-36 3-28 (148)
259 TIGR03263 guanyl_kin guanylate 97.9 1.5E-05 3.2E-10 43.2 3.0 22 12-33 3-24 (180)
260 PRK14241 phosphate transporter 97.9 6.4E-05 1.4E-09 43.1 5.7 23 12-34 32-54 (258)
261 COG1084 Predicted GTPase [Gene 97.9 8.2E-05 1.8E-09 44.6 6.2 28 9-36 167-194 (346)
262 TIGR01393 lepA GTP-binding pro 97.9 6.3E-05 1.4E-09 48.0 6.1 24 10-33 3-26 (595)
263 KOG1547|consensus 97.9 5.7E-05 1.2E-09 44.0 5.3 55 8-63 44-107 (336)
264 cd01855 YqeH YqeH. YqeH is an 97.9 1.4E-05 3.1E-10 43.8 2.8 24 11-34 128-151 (190)
265 COG3638 ABC-type phosphate/pho 97.9 1.5E-05 3.3E-10 45.9 2.9 21 12-32 32-52 (258)
266 PRK14249 phosphate ABC transpo 97.9 7.1E-05 1.5E-09 42.7 5.6 23 12-34 32-54 (251)
267 TIGR00960 3a0501s02 Type II (G 97.9 1.8E-05 3.9E-10 44.1 3.2 23 12-34 31-53 (216)
268 cd03226 ABC_cobalt_CbiO_domain 97.9 1.8E-05 4E-10 43.8 3.2 23 12-34 28-50 (205)
269 PRK14267 phosphate ABC transpo 97.9 7.1E-05 1.5E-09 42.7 5.6 23 12-34 32-54 (253)
270 cd00820 PEPCK_HprK Phosphoenol 97.9 1.7E-05 3.7E-10 40.6 2.7 21 11-31 16-36 (107)
271 PRK10218 GTP-binding protein; 97.9 9.5E-05 2.1E-09 47.3 6.5 24 9-32 4-27 (607)
272 PRK14273 phosphate ABC transpo 97.9 8.2E-05 1.8E-09 42.5 5.7 23 12-34 35-57 (254)
273 cd03222 ABC_RNaseL_inhibitor T 97.9 3.3E-05 7.2E-10 42.5 3.9 23 12-34 27-49 (177)
274 PF07728 AAA_5: AAA domain (dy 97.9 1.6E-05 3.6E-10 41.5 2.7 20 13-32 2-21 (139)
275 cd03261 ABC_Org_Solvent_Resist 97.9 2E-05 4.4E-10 44.5 3.2 23 12-34 28-50 (235)
276 cd03225 ABC_cobalt_CbiO_domain 97.8 2.1E-05 4.5E-10 43.7 3.2 23 12-34 29-51 (211)
277 TIGR02315 ABC_phnC phosphonate 97.8 2E-05 4.4E-10 44.6 3.2 22 12-33 30-51 (243)
278 PF13555 AAA_29: P-loop contai 97.8 2.6E-05 5.7E-10 36.3 3.0 21 12-32 25-45 (62)
279 PRK00098 GTPase RsgA; Reviewed 97.8 1.9E-05 4.2E-10 46.4 3.1 24 11-34 165-188 (298)
280 PRK06217 hypothetical protein; 97.8 2.4E-05 5.1E-10 42.9 3.3 23 11-33 2-24 (183)
281 COG3840 ThiQ ABC-type thiamine 97.8 2.7E-05 5.8E-10 43.8 3.4 27 11-37 26-52 (231)
282 TIGR03608 L_ocin_972_ABC putat 97.8 2.3E-05 4.9E-10 43.4 3.2 23 12-34 26-48 (206)
283 TIGR00101 ureG urease accessor 97.8 2.3E-05 5E-10 43.7 3.2 24 10-33 1-24 (199)
284 cd03264 ABC_drug_resistance_li 97.8 2.1E-05 4.5E-10 43.8 3.0 22 12-33 27-48 (211)
285 cd03224 ABC_TM1139_LivF_branch 97.8 2.2E-05 4.8E-10 43.9 3.1 23 12-34 28-50 (222)
286 cd03262 ABC_HisP_GlnQ_permease 97.8 2.4E-05 5.1E-10 43.5 3.2 23 12-34 28-50 (213)
287 cd03269 ABC_putative_ATPase Th 97.8 2.4E-05 5.3E-10 43.4 3.2 23 12-34 28-50 (210)
288 cd03292 ABC_FtsE_transporter F 97.8 2.4E-05 5.2E-10 43.5 3.2 23 12-34 29-51 (214)
289 cd03265 ABC_DrrA DrrA is the A 97.8 2.4E-05 5.3E-10 43.8 3.2 22 12-33 28-49 (220)
290 cd01900 YchF YchF subfamily. 97.8 3.5E-05 7.7E-10 45.0 4.0 24 13-36 1-24 (274)
291 PRK14257 phosphate ABC transpo 97.8 8.6E-05 1.9E-09 44.3 5.7 23 12-34 110-132 (329)
292 PRK14237 phosphate transporter 97.8 8.7E-05 1.9E-09 42.8 5.5 23 12-34 48-70 (267)
293 cd03257 ABC_NikE_OppD_transpor 97.8 2.4E-05 5.1E-10 43.8 3.1 23 12-34 33-55 (228)
294 PRK14737 gmk guanylate kinase; 97.8 2.3E-05 5.1E-10 43.3 3.0 23 11-33 5-27 (186)
295 PF13191 AAA_16: AAA ATPase do 97.8 1.9E-05 4.1E-10 42.6 2.6 23 10-32 24-46 (185)
296 cd03218 ABC_YhbG The ABC trans 97.8 2.5E-05 5.4E-10 43.9 3.2 23 12-34 28-50 (232)
297 TIGR02211 LolD_lipo_ex lipopro 97.8 2.6E-05 5.7E-10 43.6 3.2 23 12-34 33-55 (221)
298 TIGR02673 FtsE cell division A 97.8 2.7E-05 5.8E-10 43.4 3.2 23 12-34 30-52 (214)
299 TIGR03797 NHPM_micro_ABC2 NHPM 97.8 5.7E-05 1.2E-09 48.4 5.0 24 11-34 480-503 (686)
300 TIGR01166 cbiO cobalt transpor 97.8 2.5E-05 5.4E-10 42.8 3.0 23 12-34 20-42 (190)
301 PRK00300 gmk guanylate kinase; 97.8 2.4E-05 5.2E-10 43.2 2.9 23 11-33 6-28 (205)
302 KOG0077|consensus 97.8 2E-05 4.4E-10 43.3 2.5 36 7-43 17-52 (193)
303 PRK11629 lolD lipoprotein tran 97.8 2.8E-05 6.1E-10 43.9 3.2 23 12-34 37-59 (233)
304 PRK14268 phosphate ABC transpo 97.8 0.00012 2.6E-09 42.0 5.8 23 12-34 40-62 (258)
305 TIGR00235 udk uridine kinase. 97.8 3.5E-05 7.7E-10 42.9 3.6 24 9-32 5-28 (207)
306 cd03259 ABC_Carb_Solutes_like 97.8 2.9E-05 6.2E-10 43.3 3.2 22 12-33 28-49 (213)
307 PRK11248 tauB taurine transpor 97.8 2.8E-05 6E-10 44.7 3.2 23 12-34 29-51 (255)
308 PF04665 Pox_A32: Poxvirus A32 97.8 2.8E-05 6.1E-10 44.7 3.2 25 8-32 11-35 (241)
309 cd03293 ABC_NrtD_SsuB_transpor 97.8 2.9E-05 6.3E-10 43.5 3.2 23 12-34 32-54 (220)
310 PF05729 NACHT: NACHT domain 97.8 2.6E-05 5.6E-10 41.2 2.9 20 13-32 3-22 (166)
311 cd03219 ABC_Mj1267_LivG_branch 97.8 2.6E-05 5.6E-10 44.0 3.0 22 12-33 28-49 (236)
312 COG0488 Uup ATPase components 97.8 6E-05 1.3E-09 47.6 4.8 42 11-52 349-394 (530)
313 cd03266 ABC_NatA_sodium_export 97.8 3E-05 6.5E-10 43.3 3.2 23 12-34 33-55 (218)
314 PRK15134 microcin C ABC transp 97.8 0.0001 2.2E-09 46.1 5.8 23 12-34 37-59 (529)
315 PRK15177 Vi polysaccharide exp 97.8 4.3E-05 9.3E-10 42.8 3.8 24 11-34 14-37 (213)
316 TIGR01978 sufC FeS assembly AT 97.8 2.9E-05 6.4E-10 43.9 3.1 22 12-33 28-49 (243)
317 cd01849 YlqF_related_GTPase Yl 97.8 3.5E-05 7.7E-10 41.1 3.3 26 9-34 99-124 (155)
318 cd03256 ABC_PhnC_transporter A 97.8 3.1E-05 6.6E-10 43.8 3.2 23 12-34 29-51 (241)
319 PRK13540 cytochrome c biogenes 97.8 4.8E-05 1E-09 42.1 3.9 23 12-34 29-51 (200)
320 CHL00189 infB translation init 97.8 0.00012 2.6E-09 47.8 6.2 32 8-39 242-273 (742)
321 cd03235 ABC_Metallic_Cations A 97.8 2.9E-05 6.2E-10 43.3 3.0 23 12-34 27-49 (213)
322 PRK11247 ssuB aliphatic sulfon 97.8 3.2E-05 6.9E-10 44.6 3.2 23 12-34 40-62 (257)
323 PF13401 AAA_22: AAA domain; P 97.8 2.6E-05 5.7E-10 40.0 2.6 23 11-33 5-27 (131)
324 cd01854 YjeQ_engC YjeQ/EngC. 97.8 3E-05 6.5E-10 45.4 3.1 24 11-34 162-185 (287)
325 cd03258 ABC_MetN_methionine_tr 97.8 3.3E-05 7.1E-10 43.5 3.2 23 12-34 33-55 (233)
326 cd03301 ABC_MalK_N The N-termi 97.8 3.5E-05 7.6E-10 42.8 3.2 23 12-34 28-50 (213)
327 cd03263 ABC_subfamily_A The AB 97.8 3.5E-05 7.5E-10 43.1 3.2 23 12-34 30-52 (220)
328 COG1161 Predicted GTPases [Gen 97.8 0.00016 3.4E-09 43.1 6.0 44 9-54 131-175 (322)
329 PRK14238 phosphate transporter 97.8 0.00013 2.8E-09 42.2 5.6 23 12-34 52-74 (271)
330 PRK14271 phosphate ABC transpo 97.8 0.00015 3.2E-09 42.2 5.8 23 12-34 49-71 (276)
331 cd04167 Snu114p Snu114p subfam 97.8 3.1E-05 6.7E-10 43.2 2.9 23 12-34 2-24 (213)
332 cd03296 ABC_CysA_sulfate_impor 97.8 3.5E-05 7.6E-10 43.7 3.2 23 12-34 30-52 (239)
333 cd03216 ABC_Carb_Monos_I This 97.8 5.8E-05 1.3E-09 40.7 3.9 23 12-34 28-50 (163)
334 TIGR03410 urea_trans_UrtE urea 97.8 3.4E-05 7.4E-10 43.4 3.1 24 11-34 27-50 (230)
335 PRK13541 cytochrome c biogenes 97.8 5.5E-05 1.2E-09 41.7 3.9 23 12-34 28-50 (195)
336 PRK13695 putative NTPase; Prov 97.8 3.5E-05 7.7E-10 41.8 3.0 22 11-32 1-22 (174)
337 COG3596 Predicted GTPase [Gene 97.8 4.1E-05 8.9E-10 45.0 3.4 30 7-36 36-65 (296)
338 cd03268 ABC_BcrA_bacitracin_re 97.8 3.8E-05 8.2E-10 42.6 3.2 23 12-34 28-50 (208)
339 cd03237 ABC_RNaseL_inhibitor_d 97.7 3.7E-05 7.9E-10 44.1 3.2 23 12-34 27-49 (246)
340 PRK10908 cell division protein 97.7 5.6E-05 1.2E-09 42.4 3.9 23 12-34 30-52 (222)
341 TIGR02323 CP_lyasePhnK phospho 97.7 3.7E-05 8E-10 43.8 3.2 23 12-34 31-53 (253)
342 cd02023 UMPK Uridine monophosp 97.7 3.3E-05 7.2E-10 42.6 2.9 21 13-33 2-22 (198)
343 cd03229 ABC_Class3 This class 97.7 4.2E-05 9E-10 41.7 3.2 22 12-33 28-49 (178)
344 PRK03839 putative kinase; Prov 97.7 3.7E-05 8E-10 41.8 3.0 22 12-33 2-23 (180)
345 PRK05480 uridine/cytidine kina 97.7 4.3E-05 9.4E-10 42.5 3.3 24 9-32 5-28 (209)
346 PRK10895 lipopolysaccharide AB 97.7 3.9E-05 8.5E-10 43.5 3.2 23 12-34 31-53 (241)
347 TIGR01189 ccmA heme ABC export 97.7 4.2E-05 9E-10 42.2 3.2 23 12-34 28-50 (198)
348 PRK14242 phosphate transporter 97.7 3.9E-05 8.5E-10 43.7 3.2 22 12-33 34-55 (253)
349 PRK11124 artP arginine transpo 97.7 4E-05 8.7E-10 43.4 3.2 23 12-34 30-52 (242)
350 cd02019 NK Nucleoside/nucleoti 97.7 4.5E-05 9.9E-10 35.8 2.9 21 13-33 2-22 (69)
351 cd03254 ABCC_Glucan_exporter_l 97.7 4.1E-05 8.9E-10 43.0 3.2 23 12-34 31-53 (229)
352 TIGR03864 PQQ_ABC_ATP ABC tran 97.7 4.2E-05 9.1E-10 43.3 3.2 23 12-34 29-51 (236)
353 cd03298 ABC_ThiQ_thiamine_tran 97.7 4.3E-05 9.3E-10 42.5 3.2 23 12-34 26-48 (211)
354 TIGR02868 CydC thiol reductant 97.7 5.3E-05 1.1E-09 47.2 3.9 23 11-33 362-384 (529)
355 COG1163 DRG Predicted GTPase [ 97.7 0.00016 3.5E-09 43.5 5.6 25 10-34 63-87 (365)
356 PRK13539 cytochrome c biogenes 97.7 6.6E-05 1.4E-09 41.8 3.9 23 12-34 30-52 (207)
357 cd03233 ABC_PDR_domain1 The pl 97.7 3.7E-05 8.1E-10 42.7 2.9 23 12-34 35-57 (202)
358 KOG1707|consensus 97.7 0.00015 3.3E-09 46.2 5.8 52 7-59 422-473 (625)
359 PRK11264 putative amino-acid A 97.7 4.4E-05 9.5E-10 43.4 3.2 23 12-34 31-53 (250)
360 PRK13538 cytochrome c biogenes 97.7 6.7E-05 1.4E-09 41.7 3.9 23 12-34 29-51 (204)
361 PRK10584 putative ABC transpor 97.7 4E-05 8.7E-10 43.1 3.0 23 12-34 38-60 (228)
362 cd03230 ABC_DR_subfamily_A Thi 97.7 4.7E-05 1E-09 41.3 3.2 23 12-34 28-50 (173)
363 TIGR03597 GTPase_YqeH ribosome 97.7 5.2E-05 1.1E-09 45.7 3.6 23 11-33 155-177 (360)
364 cd03297 ABC_ModC_molybdenum_tr 97.7 4.5E-05 9.7E-10 42.5 3.2 24 11-34 24-47 (214)
365 cd00009 AAA The AAA+ (ATPases 97.7 4.1E-05 9E-10 39.1 2.9 24 11-34 20-43 (151)
366 PRK10247 putative ABC transpor 97.7 4.6E-05 1E-09 42.9 3.2 23 12-34 35-57 (225)
367 cd03223 ABCD_peroxisomal_ALDP 97.7 4.9E-05 1.1E-09 41.1 3.2 23 12-34 29-51 (166)
368 PRK14247 phosphate ABC transpo 97.7 4.5E-05 9.7E-10 43.4 3.2 23 12-34 31-53 (250)
369 TIGR01360 aden_kin_iso1 adenyl 97.7 4.3E-05 9.2E-10 41.5 3.0 22 11-32 4-25 (188)
370 cd03295 ABC_OpuCA_Osmoprotecti 97.7 4.7E-05 1E-09 43.2 3.2 23 12-34 29-51 (242)
371 cd03247 ABCC_cytochrome_bd The 97.7 4.9E-05 1.1E-09 41.4 3.2 23 12-34 30-52 (178)
372 PRK13638 cbiO cobalt transport 97.7 4.2E-05 9.2E-10 44.1 3.0 23 12-34 29-51 (271)
373 PRK11650 ugpC glycerol-3-phosp 97.7 5.8E-05 1.3E-09 45.4 3.7 23 12-34 32-54 (356)
374 PRK13543 cytochrome c biogenes 97.7 4.7E-05 1E-09 42.6 3.1 23 12-34 39-61 (214)
375 cd03236 ABC_RNaseL_inhibitor_d 97.7 4.7E-05 1E-09 43.9 3.2 23 12-34 28-50 (255)
376 PRK15056 manganese/iron transp 97.7 4.5E-05 9.8E-10 44.1 3.2 23 12-34 35-57 (272)
377 PRK13645 cbiO cobalt transport 97.7 4.6E-05 9.9E-10 44.4 3.2 23 12-34 39-61 (289)
378 cd03215 ABC_Carb_Monos_II This 97.7 7.2E-05 1.6E-09 40.9 3.8 23 12-34 28-50 (182)
379 PRK14250 phosphate ABC transpo 97.7 4.8E-05 1E-09 43.2 3.2 23 12-34 31-53 (241)
380 cd03231 ABC_CcmA_heme_exporter 97.7 5E-05 1.1E-09 42.1 3.2 24 11-34 27-50 (201)
381 COG4987 CydC ABC-type transpor 97.7 5.7E-05 1.2E-09 47.7 3.7 24 11-34 365-388 (573)
382 PRK15112 antimicrobial peptide 97.7 4.7E-05 1E-09 43.9 3.2 23 12-34 41-63 (267)
383 PRK14239 phosphate transporter 97.7 4.8E-05 1E-09 43.3 3.2 22 12-33 33-54 (252)
384 TIGR01184 ntrCD nitrate transp 97.7 5.1E-05 1.1E-09 42.9 3.2 23 12-34 13-35 (230)
385 PRK13651 cobalt transporter AT 97.7 4.8E-05 1E-09 44.9 3.2 23 12-34 35-57 (305)
386 PRK14274 phosphate ABC transpo 97.7 4.7E-05 1E-09 43.6 3.1 23 12-34 40-62 (259)
387 PRK13649 cbiO cobalt transport 97.7 4.7E-05 1E-09 44.1 3.1 23 12-34 35-57 (280)
388 PRK09544 znuC high-affinity zi 97.7 5.1E-05 1.1E-09 43.6 3.2 22 12-33 32-53 (251)
389 cd03214 ABC_Iron-Siderophores_ 97.7 8.2E-05 1.8E-09 40.6 3.9 23 12-34 27-49 (180)
390 PRK14530 adenylate kinase; Pro 97.7 5.2E-05 1.1E-09 42.5 3.2 21 12-32 5-25 (215)
391 TIGR02770 nickel_nikD nickel i 97.7 5E-05 1.1E-09 42.9 3.1 23 12-34 14-36 (230)
392 COG4619 ABC-type uncharacteriz 97.7 5E-05 1.1E-09 42.3 3.0 22 12-33 31-52 (223)
393 cd03232 ABC_PDR_domain2 The pl 97.7 5.4E-05 1.2E-09 41.7 3.2 22 12-33 35-56 (192)
394 cd03267 ABC_NatA_like Similar 97.7 5.3E-05 1.1E-09 43.0 3.2 24 11-34 48-71 (236)
395 PF13173 AAA_14: AAA domain 97.7 5.3E-05 1.1E-09 39.3 3.0 24 12-35 4-27 (128)
396 PRK11300 livG leucine/isoleuci 97.7 5E-05 1.1E-09 43.3 3.1 23 12-34 33-55 (255)
397 PRK11432 fbpC ferric transport 97.7 6.6E-05 1.4E-09 45.1 3.7 23 12-34 34-56 (351)
398 cd03234 ABCG_White The White s 97.7 5.3E-05 1.2E-09 42.6 3.2 23 12-34 35-57 (226)
399 cd03252 ABCC_Hemolysin The ABC 97.7 5.3E-05 1.2E-09 42.8 3.2 23 12-34 30-52 (237)
400 PRK11701 phnK phosphonate C-P 97.7 5.3E-05 1.1E-09 43.4 3.2 23 12-34 34-56 (258)
401 PRK14264 phosphate ABC transpo 97.7 0.00021 4.6E-09 42.0 5.8 23 12-34 73-95 (305)
402 TIGR03005 ectoine_ehuA ectoine 97.7 5.2E-05 1.1E-09 43.2 3.1 23 12-34 28-50 (252)
403 TIGR01288 nodI ATP-binding ABC 97.7 5.2E-05 1.1E-09 44.5 3.2 23 12-34 32-54 (303)
404 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.7 7.2E-05 1.6E-09 39.7 3.5 23 12-34 28-50 (144)
405 PRK11831 putative ABC transpor 97.7 5.2E-05 1.1E-09 43.8 3.1 23 12-34 35-57 (269)
406 TIGR02769 nickel_nikE nickel i 97.7 5.3E-05 1.1E-09 43.6 3.2 23 12-34 39-61 (265)
407 cd03294 ABC_Pro_Gly_Bertaine T 97.7 5.4E-05 1.2E-09 43.7 3.2 23 12-34 52-74 (269)
408 PRK14259 phosphate ABC transpo 97.7 5.3E-05 1.2E-09 43.8 3.2 22 12-33 41-62 (269)
409 PRK14532 adenylate kinase; Pro 97.7 5.6E-05 1.2E-09 41.3 3.1 21 12-32 2-22 (188)
410 cd03253 ABCC_ATM1_transporter 97.7 5.6E-05 1.2E-09 42.6 3.2 23 12-34 29-51 (236)
411 cd03251 ABCC_MsbA MsbA is an e 97.7 5.6E-05 1.2E-09 42.6 3.2 23 12-34 30-52 (234)
412 TIGR01188 drrA daunorubicin re 97.7 5.4E-05 1.2E-09 44.4 3.2 23 12-34 21-43 (302)
413 TIGR01313 therm_gnt_kin carboh 97.7 3.8E-05 8.3E-10 41.1 2.4 21 13-33 1-21 (163)
414 COG1118 CysA ABC-type sulfate/ 97.7 6.6E-05 1.4E-09 44.8 3.5 25 12-36 30-54 (345)
415 cd03245 ABCC_bacteriocin_expor 97.7 5.9E-05 1.3E-09 42.1 3.2 23 12-34 32-54 (220)
416 PRK10771 thiQ thiamine transpo 97.7 5.6E-05 1.2E-09 42.7 3.1 23 12-34 27-49 (232)
417 PRK09580 sufC cysteine desulfu 97.7 5.1E-05 1.1E-09 43.1 3.0 22 12-33 29-50 (248)
418 PRK10744 pstB phosphate transp 97.7 5.8E-05 1.2E-09 43.3 3.2 22 12-33 41-62 (260)
419 PRK13796 GTPase YqeH; Provisio 97.7 6.3E-05 1.4E-09 45.4 3.4 23 11-33 161-183 (365)
420 PRK10418 nikD nickel transport 97.7 5.8E-05 1.3E-09 43.2 3.2 23 12-34 31-53 (254)
421 TIGR00972 3a0107s01c2 phosphat 97.7 5.4E-05 1.2E-09 43.1 3.0 23 12-34 29-51 (247)
422 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.7 5.9E-05 1.3E-09 42.5 3.1 22 12-33 50-71 (224)
423 PRK10575 iron-hydroxamate tran 97.7 5.3E-05 1.1E-09 43.6 3.0 23 12-34 39-61 (265)
424 cd03246 ABCC_Protease_Secretio 97.7 6.5E-05 1.4E-09 40.8 3.2 23 12-34 30-52 (173)
425 PRK14240 phosphate transporter 97.7 6.1E-05 1.3E-09 42.9 3.2 22 12-33 31-52 (250)
426 PF13238 AAA_18: AAA domain; P 97.7 5.4E-05 1.2E-09 38.6 2.7 21 13-33 1-21 (129)
427 PRK13646 cbiO cobalt transport 97.7 6E-05 1.3E-09 43.9 3.2 23 12-34 35-57 (286)
428 COG3845 ABC-type uncharacteriz 97.7 0.00011 2.4E-09 45.9 4.4 26 14-44 34-59 (501)
429 smart00053 DYNc Dynamin, GTPas 97.7 9.8E-05 2.1E-09 42.5 4.0 26 10-35 26-51 (240)
430 CHL00131 ycf16 sulfate ABC tra 97.7 5.5E-05 1.2E-09 43.1 3.0 22 12-33 35-56 (252)
431 KOG1423|consensus 97.7 7.5E-05 1.6E-09 44.7 3.6 31 7-37 69-99 (379)
432 TIGR03740 galliderm_ABC gallid 97.7 6.5E-05 1.4E-09 42.1 3.2 23 12-34 28-50 (223)
433 TIGR02324 CP_lyasePhnL phospho 97.7 6.4E-05 1.4E-09 42.1 3.2 23 12-34 36-58 (224)
434 COG1119 ModF ABC-type molybden 97.7 8.7E-05 1.9E-09 43.0 3.7 27 11-37 58-84 (257)
435 PRK09452 potA putrescine/sperm 97.7 7.7E-05 1.7E-09 45.2 3.7 23 12-34 42-64 (375)
436 PRK13949 shikimate kinase; Pro 97.7 6.3E-05 1.4E-09 41.0 3.0 21 12-32 3-23 (169)
437 TIGR03265 PhnT2 putative 2-ami 97.7 8.7E-05 1.9E-09 44.6 3.9 23 12-34 32-54 (353)
438 PRK11000 maltose/maltodextrin 97.7 8.8E-05 1.9E-09 44.8 3.9 23 12-34 31-53 (369)
439 PRK13548 hmuV hemin importer A 97.7 6.3E-05 1.4E-09 43.2 3.2 23 12-34 30-52 (258)
440 TIGR03411 urea_trans_UrtD urea 97.6 9.3E-05 2E-09 41.9 3.8 23 12-34 30-52 (242)
441 cd03217 ABC_FeS_Assembly ABC-t 97.6 6.6E-05 1.4E-09 41.6 3.1 22 12-33 28-49 (200)
442 PRK13637 cbiO cobalt transport 97.6 6.5E-05 1.4E-09 43.8 3.2 23 12-34 35-57 (287)
443 PRK14262 phosphate ABC transpo 97.6 6.6E-05 1.4E-09 42.8 3.2 22 12-33 31-52 (250)
444 PRK13640 cbiO cobalt transport 97.6 5.9E-05 1.3E-09 43.9 3.0 23 12-34 35-57 (282)
445 PRK02496 adk adenylate kinase; 97.6 7.6E-05 1.6E-09 40.8 3.3 22 11-32 2-23 (184)
446 cd03244 ABCC_MRP_domain2 Domai 97.6 6.3E-05 1.4E-09 42.0 3.0 22 12-33 32-53 (221)
447 PF00625 Guanylate_kin: Guanyl 97.6 6.7E-05 1.5E-09 41.0 3.0 20 13-32 5-24 (183)
448 PRK13632 cbiO cobalt transport 97.6 6.7E-05 1.5E-09 43.4 3.2 23 12-34 37-59 (271)
449 PRK09493 glnQ glutamine ABC tr 97.6 7E-05 1.5E-09 42.4 3.2 23 12-34 29-51 (240)
450 PRK14256 phosphate ABC transpo 97.6 6.2E-05 1.3E-09 43.0 3.0 23 12-34 32-54 (252)
451 cd03248 ABCC_TAP TAP, the Tran 97.6 7.1E-05 1.5E-09 42.0 3.2 23 12-34 42-64 (226)
452 PRK15093 antimicrobial peptide 97.6 6.7E-05 1.5E-09 44.6 3.2 23 12-34 35-57 (330)
453 PRK14265 phosphate ABC transpo 97.6 6.9E-05 1.5E-09 43.4 3.2 22 12-33 48-69 (274)
454 cd01130 VirB11-like_ATPase Typ 97.6 6.6E-05 1.4E-09 41.3 3.0 23 11-33 26-48 (186)
455 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.6 6.1E-05 1.3E-09 42.6 2.9 23 12-34 31-53 (238)
456 PRK14248 phosphate ABC transpo 97.6 7E-05 1.5E-09 43.2 3.2 22 12-33 49-70 (268)
457 TIGR03771 anch_rpt_ABC anchore 97.6 7.2E-05 1.6E-09 42.1 3.1 23 12-34 8-30 (223)
458 PRK15064 ABC transporter ATP-b 97.6 6.4E-05 1.4E-09 47.0 3.2 23 12-34 29-51 (530)
459 cd03369 ABCC_NFT1 Domain 2 of 97.6 7.6E-05 1.6E-09 41.4 3.2 23 12-34 36-58 (207)
460 PRK13641 cbiO cobalt transport 97.6 7.2E-05 1.6E-09 43.6 3.2 23 12-34 35-57 (287)
461 cd03228 ABCC_MRP_Like The MRP 97.6 7.2E-05 1.6E-09 40.5 3.0 23 12-34 30-52 (171)
462 cd03290 ABCC_SUR1_N The SUR do 97.6 7.6E-05 1.6E-09 41.7 3.2 23 12-34 29-51 (218)
463 PRK10851 sulfate/thiosulfate t 97.6 6.3E-05 1.4E-09 45.2 3.0 23 12-34 30-52 (353)
464 COG1121 ZnuC ABC-type Mn/Zn tr 97.6 6.6E-05 1.4E-09 43.5 3.0 21 12-32 32-52 (254)
465 PRK09984 phosphonate/organopho 97.6 7.2E-05 1.6E-09 42.9 3.1 23 12-34 32-54 (262)
466 PRK11144 modC molybdate transp 97.6 0.0001 2.2E-09 44.2 3.9 23 12-34 26-48 (352)
467 PRK08233 hypothetical protein; 97.6 7E-05 1.5E-09 40.5 3.0 23 11-33 4-26 (182)
468 TIGR01277 thiQ thiamine ABC tr 97.6 7.7E-05 1.7E-09 41.6 3.2 23 12-34 26-48 (213)
469 PRK11153 metN DL-methionine tr 97.6 7.1E-05 1.5E-09 44.8 3.2 23 12-34 33-55 (343)
470 PRK13648 cbiO cobalt transport 97.6 7.6E-05 1.6E-09 43.1 3.2 23 12-34 37-59 (269)
471 PRK13546 teichoic acids export 97.6 7.4E-05 1.6E-09 43.3 3.1 23 12-34 52-74 (264)
472 TIGR03015 pepcterm_ATPase puta 97.6 6.5E-05 1.4E-09 42.9 2.9 22 12-33 45-66 (269)
473 PRK13547 hmuV hemin importer A 97.6 7.3E-05 1.6E-09 43.4 3.1 23 12-34 29-51 (272)
474 PRK11231 fecE iron-dicitrate t 97.6 7.7E-05 1.7E-09 42.7 3.2 22 12-33 30-51 (255)
475 TIGR03258 PhnT 2-aminoethylpho 97.6 9.7E-05 2.1E-09 44.6 3.7 24 12-35 33-56 (362)
476 PRK14235 phosphate transporter 97.6 7.7E-05 1.7E-09 43.0 3.2 23 12-34 47-69 (267)
477 COG1131 CcmA ABC-type multidru 97.6 6.9E-05 1.5E-09 44.0 3.0 25 12-36 33-57 (293)
478 PRK14251 phosphate ABC transpo 97.6 7.9E-05 1.7E-09 42.5 3.2 23 12-34 32-54 (251)
479 PRK10751 molybdopterin-guanine 97.6 8.1E-05 1.8E-09 41.0 3.1 21 12-32 8-28 (173)
480 smart00072 GuKc Guanylate kina 97.6 7.8E-05 1.7E-09 40.9 3.0 23 12-34 4-26 (184)
481 PRK10619 histidine/lysine/argi 97.6 8.1E-05 1.8E-09 42.6 3.2 23 12-34 33-55 (257)
482 PRK14275 phosphate ABC transpo 97.6 7.9E-05 1.7E-09 43.5 3.2 22 12-33 67-88 (286)
483 PRK05057 aroK shikimate kinase 97.6 8.6E-05 1.9E-09 40.5 3.1 23 11-33 5-27 (172)
484 PRK14261 phosphate ABC transpo 97.6 8.1E-05 1.7E-09 42.5 3.2 22 12-33 34-55 (253)
485 cd01131 PilT Pilus retraction 97.6 7.3E-05 1.6E-09 41.6 2.9 21 13-33 4-24 (198)
486 PRK10253 iron-enterobactin tra 97.6 7.3E-05 1.6E-09 43.0 3.0 23 12-34 35-57 (265)
487 PRK11147 ABC transporter ATPas 97.6 9.4E-05 2E-09 47.3 3.7 24 11-34 30-53 (635)
488 PRK13644 cbiO cobalt transport 97.6 8.3E-05 1.8E-09 43.1 3.2 22 12-33 30-51 (274)
489 PTZ00088 adenylate kinase 1; P 97.6 7.7E-05 1.7E-09 42.6 3.0 24 10-33 6-29 (229)
490 PRK13647 cbiO cobalt transport 97.6 8.3E-05 1.8E-09 43.1 3.2 23 12-34 33-55 (274)
491 PRK14272 phosphate ABC transpo 97.6 8.5E-05 1.8E-09 42.3 3.2 23 12-34 32-54 (252)
492 TIGR03269 met_CoM_red_A2 methy 97.6 7.5E-05 1.6E-09 46.5 3.2 22 12-33 28-49 (520)
493 cd03250 ABCC_MRP_domain1 Domai 97.6 0.00013 2.8E-09 40.4 3.8 23 12-34 33-55 (204)
494 COG0410 LivF ABC-type branched 97.6 7.8E-05 1.7E-09 42.8 3.0 23 12-34 31-53 (237)
495 PRK14269 phosphate ABC transpo 97.6 8.7E-05 1.9E-09 42.3 3.2 22 12-33 30-51 (246)
496 PRK10636 putative ABC transpor 97.6 0.0001 2.2E-09 47.2 3.8 23 12-34 29-51 (638)
497 cd04166 CysN_ATPS CysN_ATPS su 97.6 6.8E-05 1.5E-09 41.8 2.7 21 12-32 1-21 (208)
498 PRK13643 cbiO cobalt transport 97.6 0.00013 2.8E-09 42.6 3.9 23 12-34 34-56 (288)
499 PRK11607 potG putrescine trans 97.6 0.00011 2.3E-09 44.7 3.7 23 12-34 47-69 (377)
500 PRK14531 adenylate kinase; Pro 97.6 9.2E-05 2E-09 40.6 3.2 22 11-32 3-24 (183)
No 1
>KOG0084|consensus
Probab=99.85 E-value=3.6e-21 Score=105.75 Aligned_cols=61 Identities=46% Similarity=0.744 Sum_probs=58.5
Q ss_pred CCCCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 3 ~~~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+++..++.||++++|++|||||||+.||..+.|.+.|..|+|+||..+++.+ +|+.++|||
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~-~gk~iKlQI 62 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVEL-DGKTIKLQI 62 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeee-cceEEEEEe
Confidence 5677899999999999999999999999999999999999999999999999 999999986
No 2
>KOG0094|consensus
Probab=99.76 E-value=5.8e-18 Score=93.40 Aligned_cols=58 Identities=28% Similarity=0.523 Sum_probs=54.4
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
.+.+.+|++++|+.+||||+|+.||+.+.|...|.+|||+||..+++.+ .+.++.||+
T Consensus 18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l-~d~~vrLQl 75 (221)
T KOG0094|consen 18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQL 75 (221)
T ss_pred ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEE-cCcEEEEEE
Confidence 3456799999999999999999999999999999999999999999999 999999985
No 3
>KOG0078|consensus
Probab=99.75 E-value=1.5e-17 Score=92.19 Aligned_cols=58 Identities=40% Similarity=0.665 Sum_probs=55.9
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
++++.+|++++|+++||||+++.||.++.|...+..|+|++|..+++.+ +|+.++|||
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l-~g~~i~lQi 65 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIEL-DGKKIKLQI 65 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEe-CCeEEEEEE
Confidence 6788999999999999999999999999999999999999999999999 999999985
No 4
>KOG0080|consensus
Probab=99.74 E-value=3.1e-17 Score=88.64 Aligned_cols=59 Identities=39% Similarity=0.666 Sum_probs=54.9
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+.+...+|++++|++|||||+|+.||..+.|.+....|||.||..+.+.+ +|++++|.|
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~v-dg~~~Klai 64 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQV-DGKRLKLAI 64 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEE-cCceEEEEE
Confidence 45677899999999999999999999999999988888999999999999 999999865
No 5
>KOG0394|consensus
Probab=99.73 E-value=7.9e-18 Score=92.20 Aligned_cols=58 Identities=29% Similarity=0.515 Sum_probs=54.8
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
.....+||+++|++|||||+|+++|...+|..+|..|||.+|.++.+.+ |++.+.|||
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~V-d~~~vtlQi 62 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQV-DDRSVTLQI 62 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEE-cCeEEEEEE
Confidence 4467899999999999999999999999999999999999999999999 899999986
No 6
>KOG0098|consensus
Probab=99.72 E-value=4.9e-17 Score=89.30 Aligned_cols=58 Identities=47% Similarity=0.764 Sum_probs=55.3
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
.+.+.+|++++|+.|||||+|+.||++..|.+.+..|+|++|-.+.+.+ ++++++|||
T Consensus 2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~i-d~k~IKlqi 59 (216)
T KOG0098|consen 2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTI-DGKQIKLQI 59 (216)
T ss_pred CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEE-cCceEEEEE
Confidence 4567899999999999999999999999999999999999999999999 999999986
No 7
>KOG0095|consensus
Probab=99.71 E-value=6.1e-17 Score=86.86 Aligned_cols=59 Identities=31% Similarity=0.642 Sum_probs=56.3
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
.++.+.||++++|+.|||||+|+.+|..+-|++....|+|.+|..+++++ +|+.++|||
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev-~gekiklqi 60 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEV-NGEKIKLQI 60 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEE-CCeEEEEEE
Confidence 46788999999999999999999999999999999999999999999999 999999986
No 8
>KOG0086|consensus
Probab=99.69 E-value=5e-17 Score=87.41 Aligned_cols=62 Identities=34% Similarity=0.632 Sum_probs=58.6
Q ss_pred CCCCCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 2 TVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 2 ~~~~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+|+..+++.+|++++|+.|.|||+|+++|...+|.++...|+|++|-.+.+.+ +++.++|||
T Consensus 1 mmsEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinV-GgK~vKLQI 62 (214)
T KOG0086|consen 1 MMSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNV-GGKTVKLQI 62 (214)
T ss_pred CcchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeee-cCcEEEEEE
Confidence 35678899999999999999999999999999999999999999999999999 999999996
No 9
>KOG0087|consensus
Probab=99.69 E-value=1.5e-16 Score=88.44 Aligned_cols=59 Identities=44% Similarity=0.734 Sum_probs=56.5
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
..+++.||++++|+++||||-|+.||..++|..+..+|||.+|.++.+.+ +++.++.||
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~v-d~k~vkaqI 67 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNV-DGKTVKAQI 67 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceee-cCcEEEEee
Confidence 56789999999999999999999999999999999999999999999999 999999886
No 10
>KOG0079|consensus
Probab=99.69 E-value=2.3e-17 Score=88.21 Aligned_cols=59 Identities=42% Similarity=0.599 Sum_probs=55.5
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
..++..+|++++|++|||||+|+.+|..+.|...|..|+|.||..+++.+ +|.+++|+|
T Consensus 3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i-~G~~VkLqI 61 (198)
T KOG0079|consen 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDI-NGDRVKLQI 61 (198)
T ss_pred ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeec-CCcEEEEEE
Confidence 44567899999999999999999999999999999999999999999999 999999986
No 11
>KOG0092|consensus
Probab=99.67 E-value=2.7e-16 Score=86.45 Aligned_cols=56 Identities=38% Similarity=0.644 Sum_probs=52.4
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
...+|++++|+++||||||+.||..+.|.+...||||..|.++.+.+ ++..++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~-~~~~ikfeI 58 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTV-DDNTIKFEI 58 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEe-CCcEEEEEE
Confidence 45799999999999999999999999999988999999999999999 888998875
No 12
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.64 E-value=2e-15 Score=82.49 Aligned_cols=53 Identities=28% Similarity=0.594 Sum_probs=48.6
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+|++++|+++||||||+++|+.+.|...+.||+|.+++.+.+.+ ++..+.++|
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~-~~~~~~l~i 53 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISI-RGTEITFSI 53 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE-CCEEEEEEE
Confidence 58999999999999999999999999999999999998889999 888887764
No 13
>KOG0093|consensus
Probab=99.60 E-value=3.6e-15 Score=79.79 Aligned_cols=60 Identities=37% Similarity=0.592 Sum_probs=55.3
Q ss_pred CCCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 4 ~~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
++..++.+|++++|++.+|||+|+.||+++.|...+..|+|++|..+++.- ..++++|||
T Consensus 15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr-~~kRiklQi 74 (193)
T KOG0093|consen 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYR-SDKRIKLQI 74 (193)
T ss_pred cccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeee-cccEEEEEE
Confidence 345678899999999999999999999999999999999999999999988 889999986
No 14
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.60 E-value=1.2e-14 Score=80.06 Aligned_cols=57 Identities=30% Similarity=0.563 Sum_probs=51.1
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
.++.+||+++|+.+||||||+.+|..+.|...+.++++.++..+.+.+ ++..+.++|
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~i 59 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILL-DGRRVKLQL 59 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEE-CCEEEEEEE
Confidence 456799999999999999999999999998888899999998888989 888888764
No 15
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.60 E-value=1.1e-14 Score=79.81 Aligned_cols=56 Identities=27% Similarity=0.373 Sum_probs=48.9
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+...+|++++|+++||||+|+.+|+.+.|...+.||++. .+.+.+.+ +++.+.++|
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~-~~~~~~~~-~~~~~~l~i 57 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEI-DTQRIELSL 57 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceee-eeEEEEEE-CCEEEEEEE
Confidence 356789999999999999999999999999999999974 44677888 888888764
No 16
>KOG0091|consensus
Probab=99.59 E-value=7e-16 Score=83.64 Aligned_cols=60 Identities=73% Similarity=1.189 Sum_probs=56.2
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+-..+.|+++++|++-||||+|++.|..++|.+-..||+|.||+.+.+++.+|.+++||+
T Consensus 3 pif~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklql 62 (213)
T KOG0091|consen 3 PIFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQL 62 (213)
T ss_pred cceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEE
Confidence 456789999999999999999999999999999999999999999999998899999985
No 17
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.59 E-value=1.5e-14 Score=80.48 Aligned_cols=53 Identities=38% Similarity=0.632 Sum_probs=48.4
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+.|+++|++|||||||+.+|..+.|...+.+|++.+++.+.+.+ +++.++++|
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~-~~~~v~l~i 53 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVEL-RGKKIRLQI 53 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEE-CCEEEEEEE
Confidence 36899999999999999999999999999999999999999999 888888764
No 18
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.58 E-value=2.1e-14 Score=77.55 Aligned_cols=52 Identities=31% Similarity=0.485 Sum_probs=47.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
||+++|+++||||+|+++|+.+.|...|.||++.++..+.+.+ +|..+.++|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i 53 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEI-LGVPFSLQL 53 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEE
Confidence 8999999999999999999999999999999999988888888 887777654
No 19
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.58 E-value=1.8e-14 Score=77.26 Aligned_cols=55 Identities=42% Similarity=0.668 Sum_probs=49.1
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+.+||+++|+++||||||++++..+.|...+.||++.++..+.+.+ ++..+.+++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~l 56 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIEL-DGKKIKLQI 56 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEE-CCEEEEEEE
Confidence 5689999999999999999999999999999999998888888888 777776653
No 20
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.58 E-value=2e-14 Score=77.54 Aligned_cols=55 Identities=24% Similarity=0.379 Sum_probs=47.7
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFA-EISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
..-+|++++|++|||||+|+++|..+.|. ..+.||++.++..+.+.+ ++..+.+.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~-~~~~~~l~ 57 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV-YGQEKYLI 57 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEE-CCeEEEEE
Confidence 35789999999999999999999999998 889999988887778888 77766654
No 21
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.57 E-value=2.6e-14 Score=75.90 Aligned_cols=53 Identities=28% Similarity=0.543 Sum_probs=47.9
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+||+++|+++||||||+++++.+.+...+.||++.++..+.+.+ ++..+.++|
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i 53 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSV-RNKEVRVNF 53 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCeEEEEEE
Confidence 58999999999999999999999999999999999988888888 787777653
No 22
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.57 E-value=2.8e-14 Score=76.35 Aligned_cols=54 Identities=39% Similarity=0.625 Sum_probs=48.4
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
.+|++++|+++||||||++++..+.|...+.+|++.++..+.+.+ ++..++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i 55 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-NGQKIKLQI 55 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEE-CCEEEEEEE
Confidence 489999999999999999999999999889999998888888888 888777653
No 23
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.57 E-value=2.8e-14 Score=77.79 Aligned_cols=53 Identities=25% Similarity=0.426 Sum_probs=46.5
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
.+|++++|+++||||+|+++|+.+.|...+.||++.+ +.+.+.+ +++.++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~-~~~~~~l~i 53 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFEN-YTASFEI-DEQRIELSL 53 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEE-EEEEEEE-CCEEEEEEE
Confidence 3799999999999999999999999999999999755 4677888 888888764
No 24
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.57 E-value=2.6e-14 Score=78.78 Aligned_cols=53 Identities=32% Similarity=0.618 Sum_probs=47.3
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecC-CeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD-GAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~l~i 64 (64)
+||+++|+++||||||+++|+.+.|...+.||++.++..+.+.+ + +..+.++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~-~~~~~~~l~l 54 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEW-DPNTVVRLQL 54 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEE-CCCCEEEEEE
Confidence 69999999999999999999999999899999999998888888 5 77776653
No 25
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.57 E-value=3.3e-14 Score=76.01 Aligned_cols=53 Identities=45% Similarity=0.680 Sum_probs=47.5
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+|++++|++++|||||++++..+.|...+.||++.++..+.+.+ ++..+.++|
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i 53 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEV-DGIKVRIQI 53 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEE
Confidence 58999999999999999999999999889999998888888888 887777653
No 26
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.56 E-value=2.4e-14 Score=76.04 Aligned_cols=52 Identities=35% Similarity=0.666 Sum_probs=48.9
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
||+++|+.+||||+|+++|..+.|...+.+|+|.+.+.+.+.+ ++..+.++|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i 52 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSI-DGKPVNLEI 52 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEE-TTEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccc-ccccccccc
Confidence 8999999999999999999999999999999999999999999 899988864
No 27
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.56 E-value=3.7e-14 Score=77.84 Aligned_cols=53 Identities=28% Similarity=0.416 Sum_probs=46.3
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
.+|++++|+++||||+|+.+|..+.|...+.||++. .+.+.+.+ +++.+.++|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~-~~~~~~~~-~~~~~~l~i 55 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFD-NYSAQTAV-DGRTVSLNL 55 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEe-eeEEEEEE-CCEEEEEEE
Confidence 589999999999999999999999999999999974 45666778 888888764
No 28
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.56 E-value=4.3e-14 Score=77.96 Aligned_cols=56 Identities=45% Similarity=0.646 Sum_probs=49.0
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
++..+||+++|++|||||||+++|....|...+.||++.++....+.+ ++..+.++
T Consensus 3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~ 58 (199)
T cd04110 3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGERVKLQ 58 (199)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEE-CCEEEEEE
Confidence 345799999999999999999999999998889999998888888888 77766654
No 29
>PLN03110 Rab GTPase; Provisional
Probab=99.56 E-value=7.7e-14 Score=77.94 Aligned_cols=57 Identities=40% Similarity=0.734 Sum_probs=51.0
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
.++.+|++++|+++||||+|+++|..+.+...+.+|++.++..+.+.+ ++..+.++|
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~-~~~~~~l~l 65 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQV-EGKTVKAQI 65 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE-CCEEEEEEE
Confidence 457899999999999999999999999998888999999998899999 887777654
No 30
>KOG0097|consensus
Probab=99.56 E-value=1.6e-14 Score=77.10 Aligned_cols=61 Identities=36% Similarity=0.581 Sum_probs=57.1
Q ss_pred CCCCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 3 ~~~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
.+.++.+.||.+++|+-|||||+|+++|...+|......|+|.+|-++.+++ .|..++|||
T Consensus 4 ~pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriiev-sgqkiklqi 64 (215)
T KOG0097|consen 4 APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQI 64 (215)
T ss_pred CccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEe-cCcEEEEEE
Confidence 4567889999999999999999999999999999999999999999999999 999999986
No 31
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.56 E-value=5.3e-14 Score=78.84 Aligned_cols=56 Identities=23% Similarity=0.453 Sum_probs=49.3
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
...+|++++|++|||||||+++++.+.|...+.||+|.+++...+.. ++..++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~-~~~~~~l~i 66 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYC 66 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEE-CCeEEEEEE
Confidence 66899999999999999999999999999999999999988888877 666666653
No 32
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.56 E-value=7.6e-14 Score=74.78 Aligned_cols=57 Identities=33% Similarity=0.559 Sum_probs=50.4
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
.+..+|++++|+++||||||++++..+.|...+.++++.++..+.+.+ ++..+.++|
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i 58 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTLQI 58 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEE-CCeEEEEEE
Confidence 346799999999999999999999999998888899998888888888 888887754
No 33
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.55 E-value=4e-14 Score=78.89 Aligned_cols=53 Identities=32% Similarity=0.617 Sum_probs=46.6
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+|++++|+++||||||+++|..+.|...+.||++.+++.+.+.++++..+.++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~ 53 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQ 53 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEE
Confidence 58999999999999999999999999999999999999999988444556654
No 34
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.55 E-value=4.2e-14 Score=77.15 Aligned_cols=52 Identities=33% Similarity=0.457 Sum_probs=45.8
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+|++++|+++||||+|+.+|+.+.|..++.||++.. +.+.+.+ +++.++++|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~-~~~~~~~-~~~~v~l~i 53 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVSV-DGNTVNLGL 53 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceee-eEEEEEE-CCEEEEEEE
Confidence 699999999999999999999999999999999754 4667788 888888764
No 35
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.55 E-value=6.9e-14 Score=79.26 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=49.3
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+....+||+++|+++||||+|+.+|+.+.|...|.||++.++ ...+.+ ++..+.|+|
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~-~~~~v~l~i 65 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLET-EEQRVELSL 65 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEE-CCEEEEEEE
Confidence 334689999999999999999999999999999999998555 567888 888888864
No 36
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.55 E-value=4.9e-14 Score=78.54 Aligned_cols=56 Identities=70% Similarity=1.092 Sum_probs=48.4
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+.+||+++|+++||||+|++++..+.+...+.||++.+++.+.+.+.++..++++|
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i 56 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQL 56 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEE
Confidence 36899999999999999999999999988889999999998888874566666653
No 37
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.54 E-value=7.1e-14 Score=75.87 Aligned_cols=52 Identities=33% Similarity=0.434 Sum_probs=44.9
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+|++++|+++||||||+++|..+.|...+.||++.++ ...+.+ +++.++++|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~-~~~~~~l~i 53 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMI-GGEPYTLGL 53 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEE-CCEEEEEEE
Confidence 6999999999999999999999999889999997544 556778 888877764
No 38
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.54 E-value=9e-14 Score=74.40 Aligned_cols=53 Identities=34% Similarity=0.547 Sum_probs=46.7
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+|++++|+++||||||++++..+.|...+.||++.++..+.+.. ++..+.+++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l 54 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR-NDKRVKLQI 54 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEE
Confidence 79999999999999999999999998889999998888888877 777776653
No 39
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.54 E-value=8.9e-14 Score=74.26 Aligned_cols=53 Identities=45% Similarity=0.668 Sum_probs=47.3
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.+|++++|+++||||+|++++..+.|...+.+|++.++..+.+.+ ++..+.++
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 54 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQ 54 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEE
Confidence 589999999999999999999999998888999998888888888 77776665
No 40
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.54 E-value=1e-13 Score=77.07 Aligned_cols=58 Identities=28% Similarity=0.359 Sum_probs=49.6
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
......+|++++|++|||||||+++++.+.+...+.||++.++....+.. ++..+.++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~i~ 61 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYT-NCGPICFN 61 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE-CCeEEEEE
Confidence 34456799999999999999999999999998899999999888877777 66666665
No 41
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.53 E-value=1.2e-13 Score=73.84 Aligned_cols=54 Identities=37% Similarity=0.699 Sum_probs=47.8
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+.+|++++|++|+|||||++++..+.+...+.++++.++..+.+.+ ++..+.++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~ 55 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEI-EGKRVKLQ 55 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEE-CCEEEEEE
Confidence 5689999999999999999999999998888899988888888888 77766654
No 42
>PLN03108 Rab family protein; Provisional
Probab=99.53 E-value=1e-13 Score=77.16 Aligned_cols=56 Identities=45% Similarity=0.729 Sum_probs=49.5
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
++.+||+++|+++||||||+++++...|...+.+|++.++....+.+ ++..+.+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~-~~~~i~l~l 59 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQI 59 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEE-CCEEEEEEE
Confidence 46799999999999999999999999998888999999888888888 887776653
No 43
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.53 E-value=1.3e-13 Score=73.50 Aligned_cols=54 Identities=44% Similarity=0.720 Sum_probs=48.1
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+.+|++++|+++||||+|++++..+.+...+.|+++.++..+.+.. ++..+.++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 55 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQI-DGKTIKAQ 55 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEE
Confidence 4589999999999999999999999998888999998888888988 78776665
No 44
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.53 E-value=1.2e-13 Score=75.40 Aligned_cols=53 Identities=42% Similarity=0.711 Sum_probs=47.1
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+||+++|+++||||||+++|..+.|...+.+|++.++..+.+.+ ++..+.+++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i 53 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYI-ENKIIKLQI 53 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEE
Confidence 58999999999999999999999998889999998888888888 887777653
No 45
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.52 E-value=7.2e-14 Score=78.73 Aligned_cols=53 Identities=21% Similarity=0.404 Sum_probs=46.3
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
.+||+++|+++||||+|+.+|..+.|...|.||++.+ +...+.+ +++.+.|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~-~~~~~~~-~~~~v~L~i 53 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFEN-YTASFEI-DKRRIELNM 53 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccc-eEEEEEE-CCEEEEEEE
Confidence 3799999999999999999999999999999999744 4567888 888888764
No 46
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.52 E-value=1.7e-13 Score=73.72 Aligned_cols=54 Identities=44% Similarity=0.733 Sum_probs=48.2
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
.+||+++|++|||||+|+++++.+.+...+.++++.++..+.+.+ ++..+.++|
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i 55 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEI-DGERIKVQL 55 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEE-CCeEEEEEE
Confidence 479999999999999999999999998889999999998888888 887776653
No 47
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.51 E-value=1.4e-13 Score=76.57 Aligned_cols=54 Identities=30% Similarity=0.409 Sum_probs=46.0
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEec----CCeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMR----DGAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----~~~~~~l~i 64 (64)
+||+++|+++||||||+++|+.+.|...+.||+|.++..+.+.++ +++.+.++|
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~I 58 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVEL 58 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEE
Confidence 589999999999999999999999999999999988887877772 246666654
No 48
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.51 E-value=1.8e-13 Score=74.75 Aligned_cols=53 Identities=21% Similarity=0.442 Sum_probs=46.5
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAE-ISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+||+++|+++||||||+++|+.+.|.. .+.+|++.++..+.+.+ ++..+.++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i 54 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVV-GERVVTLGI 54 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEE-CCEEEEEEE
Confidence 589999999999999999999999874 68899998888888889 888877653
No 49
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.51 E-value=1.1e-13 Score=73.47 Aligned_cols=52 Identities=31% Similarity=0.595 Sum_probs=45.1
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.+|++++|++|||||||+++++.+.|...+.||++ +.+.+.+.+ ++..+.++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~ 52 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEV-DGQQCMLE 52 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEE-CCEEEEEE
Confidence 37999999999999999999999999888999986 666778888 77777665
No 50
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.51 E-value=9.8e-14 Score=76.80 Aligned_cols=52 Identities=23% Similarity=0.393 Sum_probs=45.8
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+||+++|+++||||||+++|+.+.|...+.||++.+++...+.+ +|+.+.++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~-~~~~~~l~ 52 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVL-SGRVYDLH 52 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEE-CCEEEEEE
Confidence 58999999999999999999999999889999987777777778 88777665
No 51
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.51 E-value=2.2e-13 Score=73.56 Aligned_cols=47 Identities=43% Similarity=0.665 Sum_probs=42.8
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEe
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 54 (64)
++.+|++++|+++||||||++++..+.|...+.+|++.++..+.+.+
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~ 48 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVY 48 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEE
Confidence 46799999999999999999999999999999999998888777766
No 52
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.50 E-value=3.2e-13 Score=72.52 Aligned_cols=55 Identities=47% Similarity=0.770 Sum_probs=48.1
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.+.+||+++|+++||||+|++++....+...+.++.+.++....+.+ ++..+.++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 56 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQ 56 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEE
Confidence 45799999999999999999999999998888899998888888888 77666654
No 53
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.50 E-value=2.1e-13 Score=73.77 Aligned_cols=53 Identities=23% Similarity=0.508 Sum_probs=45.1
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
.+|++++|+.|||||||+++|..+.|...+.||++ +.+.+.+.+ ++..+.++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~-~~~~~~~~~-~~~~~~l~i 54 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIE-DAYKQQARI-DNEPALLDI 54 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCccc-ceEEEEEEE-CCEEEEEEE
Confidence 47999999999999999999999999988999997 444566788 887777653
No 54
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.49 E-value=2.2e-13 Score=71.98 Aligned_cols=52 Identities=29% Similarity=0.546 Sum_probs=43.3
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.+||+++|++|||||||+++++.+.|...+.||++ +.+.+.+.+ ++..+.++
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~ 52 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVI-DGETCLLD 52 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcch-heEEEEEEE-CCEEEEEE
Confidence 37999999999999999999999999888999987 445666777 77666554
No 55
>PLN00023 GTP-binding protein; Provisional
Probab=99.49 E-value=2.3e-13 Score=80.29 Aligned_cols=48 Identities=31% Similarity=0.400 Sum_probs=44.2
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEe
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 54 (64)
+...+||+++|++|||||+|+++|+.+.|...+.+|+|.++..+.+.+
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~ 65 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITY 65 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEE
Confidence 456899999999999999999999999999899999999998888887
No 56
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.49 E-value=3.5e-13 Score=71.99 Aligned_cols=53 Identities=25% Similarity=0.447 Sum_probs=46.1
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+|++++|+++||||||++++..+.|.+.+.++.+.+++.+.+.+ +++.+.++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i 53 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKF-EGKTILVDF 53 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEE
Confidence 58999999999999999999999998888889888887777888 777777653
No 57
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.49 E-value=3.6e-13 Score=72.45 Aligned_cols=52 Identities=25% Similarity=0.417 Sum_probs=45.4
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+|++++|++|||||||++++..+.+...+.||++.++....+.. ++..+.++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~ 52 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHT-NRGKIRFN 52 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEE
Confidence 59999999999999999999999998889999998887777777 66666664
No 58
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.49 E-value=3.9e-13 Score=71.40 Aligned_cols=53 Identities=38% Similarity=0.647 Sum_probs=46.9
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+|++++|+++||||||++++..+.+...+.++++.++..+.+.+ ++..+.++|
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l 53 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRV-GGKRVKLQI 53 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEE
Confidence 58999999999999999999999998889999998888888888 777776653
No 59
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.48 E-value=4.1e-13 Score=72.83 Aligned_cols=52 Identities=33% Similarity=0.430 Sum_probs=45.4
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+|++++|+++||||+|+.+|..+.|..++.||++ +.+...+.+ ++..++++|
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~-~~~~~~l~i 53 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMV-DGKPVNLGL 53 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEE-CCEEEEEEE
Confidence 7999999999999999999999999999999996 566667778 888877754
No 60
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.47 E-value=5.2e-13 Score=70.83 Aligned_cols=52 Identities=29% Similarity=0.578 Sum_probs=45.1
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecC--CeEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD--GAFLFCF 63 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~l~ 63 (64)
+||+++|++++|||||++++..+.|...+.||++.++..+.+.+ + +..++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~ 54 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFL-RQSDEDVRLM 54 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEE-cCCCCEEEEE
Confidence 58999999999999999999999999889999998887777777 5 5566654
No 61
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.47 E-value=3.5e-13 Score=71.69 Aligned_cols=52 Identities=31% Similarity=0.603 Sum_probs=45.3
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.+|++++|++|||||||+++++.+.+...+.||++ +++...+.+ ++..+.++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~ 52 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEV-DSSPSVLE 52 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEE-CCEEEEEE
Confidence 47999999999999999999999999988889985 677788888 88776665
No 62
>PTZ00369 Ras-like protein; Provisional
Probab=99.47 E-value=4e-13 Score=73.50 Aligned_cols=54 Identities=24% Similarity=0.466 Sum_probs=45.6
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
..+|++++|+++||||||+++|+.+.|...+.||++..+ .+.+.+ ++..+.++|
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i 57 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVI-DEETCLLDI 57 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEE-CCEEEEEEE
Confidence 368999999999999999999999999888999997544 677778 777776653
No 63
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.47 E-value=2.5e-13 Score=77.46 Aligned_cols=52 Identities=31% Similarity=0.661 Sum_probs=46.3
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+||+++|+.+||||||+++|+.+.|...+.||++ +++.+.+.+ +++.+.++|
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i-~~~~~~l~I 52 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSI-RGEVYQLDI 52 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEE-CCEEEEEEE
Confidence 5899999999999999999999999988999996 788888888 888877654
No 64
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.46 E-value=7.7e-13 Score=70.13 Aligned_cols=52 Identities=25% Similarity=0.551 Sum_probs=46.5
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+|++++|++++|||||++++....+...+.|+.+.++..+.+.+ ++..++++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 52 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYL-EDKTVRLQ 52 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEE-CCEEEEEE
Confidence 58999999999999999999999998888999999999999988 77766654
No 65
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.46 E-value=4.7e-13 Score=71.36 Aligned_cols=52 Identities=33% Similarity=0.562 Sum_probs=44.0
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
++||+++|++|||||||+++++.+.+...+.||++. .+.+.+.+ ++..+.++
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~l~ 52 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQVEV-DGQQCMLE 52 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEE-CCEEEEEE
Confidence 479999999999999999999999998888999974 44567778 77777665
No 66
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.46 E-value=7.4e-13 Score=70.73 Aligned_cols=52 Identities=35% Similarity=0.658 Sum_probs=45.9
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+||+++|+++||||||++++....+...+.++++.++..+.+.+ ++..+.++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 52 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTV-DDKLVTLQ 52 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEE-CCEEEEEE
Confidence 58999999999999999999999998888899988888888888 77766654
No 67
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.46 E-value=7.9e-13 Score=70.20 Aligned_cols=53 Identities=40% Similarity=0.677 Sum_probs=46.7
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.+|++++|++++|||+|++++..+.+...+.++.+.++..+.+.+ ++..+.++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~-~~~~~~~~ 53 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNL-DDTTVKFE 53 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEE
Confidence 479999999999999999999999998878899988888888888 77776665
No 68
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.44 E-value=1.1e-12 Score=69.74 Aligned_cols=53 Identities=26% Similarity=0.457 Sum_probs=44.4
Q ss_pred eeEEEECCCCChHHHHHHHHHcC--CCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG--KFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+|++++|+++||||||++++..+ .|...+.+|+|.++..+.+.++++..++++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 55 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELF 55 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEE
Confidence 58999999999999999999865 688889999999988888877445666654
No 69
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.44 E-value=2.1e-12 Score=68.93 Aligned_cols=56 Identities=36% Similarity=0.711 Sum_probs=48.5
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
....+|++++|++|||||||++++..+.+...+.++++.++..+.+.+ ++..+.++
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 59 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-KGEKIKLQ 59 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEE
Confidence 356799999999999999999999988888888899998888888888 88776654
No 70
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.44 E-value=1.4e-12 Score=69.13 Aligned_cols=52 Identities=54% Similarity=0.809 Sum_probs=45.8
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+||+++|++++|||||++++....+...+.++++.++....+.+ ++..+.++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 52 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEV-DGKRVKLQ 52 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEE
Confidence 58999999999999999999999988888899998888888888 77666554
No 71
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.43 E-value=1.2e-12 Score=71.62 Aligned_cols=52 Identities=33% Similarity=0.581 Sum_probs=43.6
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
.||+++|++|||||||+++|..+.|...+.||++.+ +.+.+.+ ++..+.++|
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~-~~~~i~~-~~~~~~l~i 52 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFEN-YVHDIFV-DGLHIELSL 52 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceee-eEEEEEE-CCEEEEEEE
Confidence 389999999999999999999999998899999754 4566777 777776653
No 72
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.43 E-value=1e-12 Score=70.40 Aligned_cols=51 Identities=25% Similarity=0.549 Sum_probs=41.6
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+|++++|++|||||||+.+|..+.|...+.|+.+ .+.+.+.+ +|+.+.++|
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~--~~~~~i~~-~~~~~~l~i 51 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG--RFKKEVLV-DGQSHLLLI 51 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc--ceEEEEEE-CCEEEEEEE
Confidence 5899999999999999999999999877766643 34577888 887777653
No 73
>PLN03118 Rab family protein; Provisional
Probab=99.42 E-value=2.7e-12 Score=71.29 Aligned_cols=57 Identities=42% Similarity=0.602 Sum_probs=47.6
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
......+||+++|+++||||||++++....+. .+.|+.+.++....+.+ ++..+.++
T Consensus 9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~l~ 65 (211)
T PLN03118 9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTV-GGKRLKLT 65 (211)
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEE-CCEEEEEE
Confidence 34566899999999999999999999998874 67899988888888888 77666654
No 74
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.41 E-value=1.4e-12 Score=73.24 Aligned_cols=53 Identities=32% Similarity=0.549 Sum_probs=44.9
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFA-EISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+||+++|++|||||||+++|..+.+. ..+.++.+.+++.+.+.+ ++..+.++|
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~i 54 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSV-DGEESTLVV 54 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEE-CCEEEEEEE
Confidence 58999999999999999999988886 678888866788888888 777776653
No 75
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.41 E-value=1.8e-12 Score=71.01 Aligned_cols=53 Identities=43% Similarity=0.687 Sum_probs=45.3
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAE-ISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+||+++|+++||||||++++..+.+.. .+.+|++.++..+.+.+ ++..+.++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i 54 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTV-DGVKVKLQI 54 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEE-CCEEEEEEE
Confidence 589999999999999999999998864 67889988887778888 887777653
No 76
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.41 E-value=1.3e-12 Score=69.47 Aligned_cols=51 Identities=31% Similarity=0.631 Sum_probs=43.4
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+||+++|++|+|||||++++..+.+...+.+|++ +.+.+.+.+ ++..+.++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~ 51 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEI-DGEVCLLD 51 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEE-CCEEEEEE
Confidence 5999999999999999999999999888888886 555677777 77777665
No 77
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.40 E-value=2e-12 Score=69.45 Aligned_cols=51 Identities=29% Similarity=0.503 Sum_probs=42.8
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.|++++|+++||||||+++|..+.|...+.||++..+ ...+.+ +++.+.++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~ 52 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEV-DGKQVELA 52 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEE-CCEEEEEE
Confidence 6999999999999999999999999988999997444 456677 77776654
No 78
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.40 E-value=2.7e-12 Score=69.17 Aligned_cols=52 Identities=33% Similarity=0.511 Sum_probs=44.5
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+|++++|++|+|||+|+.++..+.|...+.||. .+.+...+.+ ++..++++|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~~~i 52 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLV-DGKPVRLQL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEE-CCEEEEEEE
Confidence 589999999999999999999999999999987 4677777888 777776653
No 79
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.40 E-value=3.3e-12 Score=67.78 Aligned_cols=52 Identities=46% Similarity=0.646 Sum_probs=44.8
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+|++++|++++|||||++++....+...+.|+.+.++....+.+ ++..+.++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 52 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTV-DGKKVKLA 52 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEE-CCEEEEEE
Confidence 58999999999999999999999888778899988887777777 77666654
No 80
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.39 E-value=3.8e-12 Score=68.33 Aligned_cols=51 Identities=33% Similarity=0.503 Sum_probs=42.9
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+|++++|++++|||||+++|..+.|...+.|+++ +.+...+.+ ++..+.++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~ 51 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTV-GGKQYLLG 51 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEE-CCEEEEEE
Confidence 5899999999999999999999999888889885 555667778 77776654
No 81
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.39 E-value=3e-12 Score=68.47 Aligned_cols=51 Identities=27% Similarity=0.461 Sum_probs=41.8
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+||+++|++|||||||+++++.+.|...+.||++. .+.+.+.. ++..+.++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~-~~~~~~~~-~~~~~~l~ 52 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIED-TYRQVISC-SKNICTLQ 52 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchh-eEEEEEEE-CCEEEEEE
Confidence 79999999999999999999999998888899863 44556666 66666554
No 82
>KOG0395|consensus
Probab=99.38 E-value=5.2e-13 Score=74.13 Aligned_cols=54 Identities=31% Similarity=0.596 Sum_probs=50.0
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
..+|++++|.+|||||+|..+|..+.|.+.|.||++ +.|.+.+.+ +++.+.|+|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v-~~~~~~l~i 55 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTV-DGEVCMLEI 55 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEE-CCEEEEEEE
Confidence 468999999999999999999999999999999996 889999999 899888864
No 83
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.38 E-value=4.8e-12 Score=67.15 Aligned_cols=52 Identities=29% Similarity=0.544 Sum_probs=43.4
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.+|++++|++++|||||++++..+.+...+.+|++ +.+.+.+.+ ++..+.++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~ 53 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEI-DGQWAILD 53 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc-ceEEEEEEE-CCEEEEEE
Confidence 47999999999999999999999998888889986 445666777 77766654
No 84
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.38 E-value=2.2e-12 Score=70.65 Aligned_cols=51 Identities=29% Similarity=0.473 Sum_probs=42.2
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
||+++|++|||||||+++|+.+.|...+.||++. .+.+.+.+ ++..+.++|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~-~~~~~~~~-~~~~~~l~i 51 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIED-SYRKQVVV-DGQPCMLEV 51 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHh-hEEEEEEE-CCEEEEEEE
Confidence 6899999999999999999999998889999974 44556677 777766653
No 85
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.37 E-value=5.3e-12 Score=68.62 Aligned_cols=53 Identities=28% Similarity=0.476 Sum_probs=42.7
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+||+++|+++||||||+++|..+.|...+.||++.++ ...+..+++..+.++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~~l~i 53 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENY-VTNIQGPNGKIIELAL 53 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeee-EEEEEecCCcEEEEEE
Confidence 4899999999999999999999999989999997655 4456662366666653
No 86
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.36 E-value=5.1e-12 Score=67.76 Aligned_cols=52 Identities=31% Similarity=0.516 Sum_probs=43.7
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.+|++++|++|+|||||++++..+.+...+.||++ +.+.+.+.+ ++..+.++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~ 52 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE-DSYRKQVEI-DGRQCDLE 52 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcch-heEEEEEEE-CCEEEEEE
Confidence 37999999999999999999999999888899987 455677777 77666654
No 87
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.36 E-value=7.6e-12 Score=69.32 Aligned_cols=53 Identities=26% Similarity=0.382 Sum_probs=44.5
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.+|++++|+.|||||||++++..+.+...+.+|++..+..+.... .+..++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 57 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEP-YRRNIKLQ 57 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEe-CCCEEEEE
Confidence 489999999999999999999999999999999987777776665 54455443
No 88
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.35 E-value=1.2e-11 Score=64.73 Aligned_cols=52 Identities=48% Similarity=0.770 Sum_probs=44.9
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+|++++|++++|||||++++....+...+.+|.+.++....+.. ++..+.+.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 52 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEI-DGKTVKLQ 52 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEE-CCEEEEEE
Confidence 58999999999999999999999998888899998888888887 66555543
No 89
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.32 E-value=4.8e-12 Score=67.57 Aligned_cols=51 Identities=31% Similarity=0.531 Sum_probs=41.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
||+++|+++||||||+++++.+.|...+.++.+. .+.+.+.+ +++.+.++|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~~~i 51 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLES-LYSRQVTI-DGEQVSLEI 51 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHH-hceEEEEE-CCEEEEEEE
Confidence 6899999999999999999999988888888753 34566677 777766653
No 90
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.32 E-value=2e-11 Score=64.39 Aligned_cols=52 Identities=31% Similarity=0.600 Sum_probs=42.7
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+|++++|++++|||||+++++.+.+...+.++.+.++..+.+.. .+..+.+.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 52 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNI-GGKRIDLA 52 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEE-CCEEEEEE
Confidence 58999999999999999999999988777788876777777777 66655543
No 91
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.32 E-value=1.4e-11 Score=66.16 Aligned_cols=50 Identities=36% Similarity=0.466 Sum_probs=41.9
Q ss_pred EEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 13 LILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
|+++|+++||||||+++|..+.|...+.|++. +.+...+.+ ++..+.++|
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~i 50 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVF-ENYSADVEV-DGKPVELGL 50 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEE-eeeeEEEEE-CCEEEEEEE
Confidence 58999999999999999999999988889986 455667778 787777653
No 92
>KOG0393|consensus
Probab=99.31 E-value=8.8e-13 Score=73.21 Aligned_cols=56 Identities=34% Similarity=0.476 Sum_probs=50.5
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
....|++++|+.+||||+|+..|..+.|+..|.||+ +|.|...+.+++|+.+.|.+
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTV-Fdnys~~v~V~dg~~v~L~L 57 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTV-FDNYSANVTVDDGKPVELGL 57 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeE-EccceEEEEecCCCEEEEee
Confidence 356899999999999999999999999999999999 79999999993399998764
No 93
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.31 E-value=1.5e-11 Score=65.10 Aligned_cols=51 Identities=31% Similarity=0.495 Sum_probs=42.0
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+||+++|++|+|||||++++....+...+.++++ +.+.+...+ ++..+.++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~ 51 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVL-DGEDVQLN 51 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEE-CCEEEEEE
Confidence 5899999999999999999999999888888886 455566667 76666654
No 94
>KOG0081|consensus
Probab=99.30 E-value=7.3e-14 Score=75.70 Aligned_cols=50 Identities=42% Similarity=0.670 Sum_probs=46.1
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEe
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 54 (64)
-++++.+|++.+|++|||||+++.+|.++.|..++..|+|+||..+.+..
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY 53 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVY 53 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEE
Confidence 45788999999999999999999999999999999999999999887755
No 95
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.30 E-value=1.5e-11 Score=68.34 Aligned_cols=48 Identities=21% Similarity=0.357 Sum_probs=43.1
Q ss_pred ECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 16 IGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 16 ~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+|+++||||+|+++|+.+.|...+.||+|.++..+.+.+ ++..++++|
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~-~~~~~~l~i 48 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIRFNV 48 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE-CCEEEEEEE
Confidence 699999999999999999998889999999998888888 888887764
No 96
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.30 E-value=3.2e-11 Score=64.32 Aligned_cols=51 Identities=37% Similarity=0.554 Sum_probs=41.6
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+|++++|++|+|||||++++..+.+...+.|+.. +.+...+.. ++..+.++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~ 51 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTV-DGKQVNLG 51 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEE-CCEEEEEE
Confidence 5899999999999999999999998777888874 555566667 67666655
No 97
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.28 E-value=5.5e-11 Score=61.79 Aligned_cols=52 Identities=25% Similarity=0.503 Sum_probs=43.1
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
.+||+++|.+|+|||||++++....+...+.++++.++....+.. ++..+.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 52 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEE-DGKTYKF 52 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEE-CCEEEEE
Confidence 379999999999999999999998887788888888887777777 6644443
No 98
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.28 E-value=2e-11 Score=66.56 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=40.3
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.+||+++|++|||||||++++..+.+... .||+|.++....+.+.++..+.++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~ 55 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFH 55 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEE
Confidence 68999999999999999999999888754 688887776666654233444443
No 99
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.27 E-value=3e-11 Score=66.85 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=39.4
Q ss_pred eeeEEEECCCCChHHHHHH-HHHcC-----CCCCCCCCceeE-EEEEEE--------EEecCCeEEEEEC
Q psy43 10 QFRLILIGDSTVGKSSLLK-YFTDG-----KFAEISDPTVGV-DFFARL--------VTMRDGAFLFCFL 64 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~-~~~~~-----~~~~~~~~t~~~-~~~~~~--------~~~~~~~~~~l~i 64 (64)
.+||+++|+++||||+|+. ++..+ .|...+.||++. +.+... +.+ +|+.+.|+|
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~-~~~~v~l~i 70 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV-DGVSVSLRL 70 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceee-CCEEEEEEE
Confidence 4799999999999999996 56544 355678899963 433322 257 788888764
No 100
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.25 E-value=3.3e-11 Score=66.39 Aligned_cols=50 Identities=26% Similarity=0.388 Sum_probs=42.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
||+++|++|||||+|+++++.+.+...+.+|++ +++...+.+ ++..++++
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~ 50 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEV-GGVSLTLD 50 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEE-CCEEEEEE
Confidence 789999999999999999999999888888885 566777778 77666654
No 101
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.24 E-value=6.7e-11 Score=64.63 Aligned_cols=51 Identities=35% Similarity=0.516 Sum_probs=40.8
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.|++++|++|+|||||++++..+.+...+.+|+... +...+.+ ++..+.+.
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~l~ 52 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFEN-YVTDCRV-DGKPVQLA 52 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccce-EEEEEEE-CCEEEEEE
Confidence 699999999999999999999888888888888544 4456667 66665543
No 102
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.24 E-value=5.2e-11 Score=62.70 Aligned_cols=50 Identities=30% Similarity=0.553 Sum_probs=41.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
|++++|++++|||||++++....+...+.++.+ +.+.+.+.. ++..+.++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~ 50 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVV-DGETYTLD 50 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEE-CCEEEEEE
Confidence 789999999999999999998888888888886 566677777 66666554
No 103
>KOG0088|consensus
Probab=99.23 E-value=3.9e-12 Score=69.02 Aligned_cols=59 Identities=22% Similarity=0.385 Sum_probs=53.7
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
..+.+.||++++|+..||||+|+-||+.++|...+..|+...|..+.+.+ ++++..|.|
T Consensus 8 ~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~-ed~ra~L~I 66 (218)
T KOG0088|consen 8 DGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNV-EDCRADLHI 66 (218)
T ss_pred cCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccccc-ccceeeeee
Confidence 45678999999999999999999999999999999999998999999999 888888765
No 104
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.22 E-value=7e-11 Score=63.82 Aligned_cols=51 Identities=29% Similarity=0.497 Sum_probs=40.6
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.||+++|++|||||||++++....+...+.|+++..+ .+.+.+ ++..+.++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~ 52 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRY-KGQDYHLE 52 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEE-CCEEEEEE
Confidence 6899999999999999999999998888888886443 556666 66555543
No 105
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.15 E-value=2.3e-10 Score=61.31 Aligned_cols=50 Identities=26% Similarity=0.295 Sum_probs=34.7
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.|++++|+++||||+|++++..+.|...+.++.. .......+ ++..++++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~ 50 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP--EITIPADV-TPERVPTT 50 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc--ceEeeeee-cCCeEEEE
Confidence 3899999999999999999999998766544332 22333344 44444443
No 106
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.15 E-value=8e-11 Score=63.25 Aligned_cols=34 Identities=29% Similarity=0.504 Sum_probs=31.2
Q ss_pred EEEECCCCChHHHHHHHHHcCCCCCCCCCceeEE
Q psy43 13 LILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVD 46 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~ 46 (64)
++++|+++||||||+++|..+.+...+.||+|.+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~ 35 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN 35 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc
Confidence 7899999999999999999998888899999854
No 107
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.14 E-value=3.1e-10 Score=61.99 Aligned_cols=38 Identities=24% Similarity=0.536 Sum_probs=32.9
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~ 47 (64)
..+||+++|+++||||+|++++..+.+.. +.||++.++
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~ 53 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV 53 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce
Confidence 46899999999999999999999888864 678988554
No 108
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.13 E-value=7.5e-10 Score=64.18 Aligned_cols=54 Identities=24% Similarity=0.389 Sum_probs=42.9
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCC----------CCCceeEEEEEEEEEecCCeEEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEI----------SDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
..++++++|++|+|||||+++++...+... ..+|++++.....+.. +|..+++.
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~-~g~~~~l~ 66 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE-NGVKLKLT 66 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE-CCEEEEEE
Confidence 478999999999999999999998876543 4567777777777777 77776665
No 109
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.12 E-value=1.4e-10 Score=60.59 Aligned_cols=41 Identities=20% Similarity=0.405 Sum_probs=34.2
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEe
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 54 (64)
||+++|+++||||||++++....+ .+.+|++.++..+.+..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~~~~iDt 42 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYNDGAIDT 42 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEcCeeecC
Confidence 899999999999999999998876 46678887776655555
No 110
>KOG0083|consensus
Probab=99.11 E-value=4.5e-12 Score=67.21 Aligned_cols=49 Identities=41% Similarity=0.588 Sum_probs=45.3
Q ss_pred EECCCCChHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 15 LIGDSTVGKSSLLKYFTDGKFAE-ISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 15 ~~G~~~~GKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
++|++++|||+|+.||.++.|.. ++.+|+|++|.++.+.+ +++.++|||
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~-~~~kvklqi 51 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDM-DDKKVKLQI 51 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceecc-CCcEEEEEE
Confidence 68999999999999999998874 67899999999999999 999999986
No 111
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.11 E-value=6.4e-10 Score=60.72 Aligned_cols=49 Identities=20% Similarity=0.443 Sum_probs=37.6
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFL 60 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 60 (64)
...+|++++|+++||||+|++++..+.+. .+.||+|.++ ..+.. ++..+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~-~~~~~ 63 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY-KNISF 63 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEE-CCEEE
Confidence 34689999999999999999999988886 5789998654 23444 44333
No 112
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.11 E-value=5.8e-10 Score=60.46 Aligned_cols=40 Identities=23% Similarity=0.479 Sum_probs=33.8
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFF 48 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~ 48 (64)
...+|++++|+++||||+|++++..+.+. .+.||++.++.
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~ 50 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE 50 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE
Confidence 34799999999999999999999888875 57799986553
No 113
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.10 E-value=6.9e-10 Score=59.31 Aligned_cols=36 Identities=25% Similarity=0.587 Sum_probs=31.5
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~ 47 (64)
+||+++|+++||||||+.++..+.|. .+.||+|.++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~ 36 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV 36 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce
Confidence 48999999999999999999988887 4789988554
No 114
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.09 E-value=7.4e-10 Score=59.67 Aligned_cols=50 Identities=24% Similarity=0.509 Sum_probs=37.7
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFL 60 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 60 (64)
+...+|++++|++++|||||++++....+ ..+.||+| +..+.+.+ ++..+
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g--~~~~~~~~-~~~~l 60 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG--FQIKTLEY-EGYKL 60 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc--cceEEEEE-CCEEE
Confidence 34578999999999999999999998754 46778887 34455556 54443
No 115
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.09 E-value=4.1e-10 Score=63.47 Aligned_cols=39 Identities=36% Similarity=0.771 Sum_probs=33.9
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFAR 50 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~ 50 (64)
+||+++|+++||||+|+++|+.+.|.. +.||++.+++.+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~ 39 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK 39 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE
Confidence 589999999999999999999999875 678998776543
No 116
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.08 E-value=7.1e-10 Score=59.82 Aligned_cols=38 Identities=26% Similarity=0.522 Sum_probs=32.8
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~ 47 (64)
..+||+++|+++||||||++++..+.+. .+.||+|.++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~ 45 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNV 45 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccce
Confidence 4689999999999999999999988875 4678988655
No 117
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.08 E-value=8.7e-10 Score=60.04 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=38.1
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
....|++++|++|+|||||++++..+.+. .+.||++. ....+.+ ++..+.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~--~~~~i~~-~~~~~~ 66 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP--TSEELTI-GNIKFK 66 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc--ceEEEEE-CCEEEE
Confidence 45789999999999999999999988774 57788763 3345566 555443
No 118
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.08 E-value=8.8e-10 Score=59.31 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=35.2
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEE
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFL 60 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 60 (64)
+|+++|+++||||||++++... +...+.||+|.. ...+.. ++..+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~-~~~~~ 45 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRL-DKYEV 45 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEE-CCEEE
Confidence 4899999999999999999976 777888999853 445555 54443
No 119
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.08 E-value=1.1e-09 Score=58.92 Aligned_cols=36 Identities=25% Similarity=0.506 Sum_probs=31.0
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEE
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFF 48 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~ 48 (64)
|++++|+++||||||++++....+.. +.||++.++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~ 36 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE 36 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE
Confidence 68999999999999999999987764 7899886553
No 120
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.07 E-value=6.9e-10 Score=56.44 Aligned_cols=25 Identities=40% Similarity=0.891 Sum_probs=22.1
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
||+++|+.|+|||||+++++...+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc
Confidence 7999999999999999999988876
No 121
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.05 E-value=1.4e-09 Score=56.85 Aligned_cols=37 Identities=32% Similarity=0.600 Sum_probs=33.0
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEE
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFF 48 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~ 48 (64)
.++++|++|||||||++++....+...+.||++.++.
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~ 37 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR 37 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE
Confidence 3789999999999999999999999999999986654
No 122
>KOG4252|consensus
Probab=99.04 E-value=5.6e-11 Score=65.67 Aligned_cols=53 Identities=26% Similarity=0.576 Sum_probs=46.7
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCe
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGA 58 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 58 (64)
.+.+.-+|++++|..+||||++++|||.+-|...|..|||.+|..+.+.+ +++
T Consensus 15 ~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v-~~E 67 (246)
T KOG4252|consen 15 TDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKV-LIE 67 (246)
T ss_pred hhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHh-hHH
Confidence 34567899999999999999999999999999999999999998777766 543
No 123
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.02 E-value=1.6e-09 Score=57.32 Aligned_cols=35 Identities=23% Similarity=0.517 Sum_probs=29.7
Q ss_pred eEEEECCCCChHHHHHHHHHcCC-CCCCCCCceeEE
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK-FAEISDPTVGVD 46 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~-~~~~~~~t~~~~ 46 (64)
+|+++|+++||||+|++++.... +...+.||+|..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~ 36 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFN 36 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccc
Confidence 58999999999999999999876 456778998854
No 124
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.01 E-value=1.2e-09 Score=59.42 Aligned_cols=52 Identities=23% Similarity=0.437 Sum_probs=40.6
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
+...+||+++|..++||||+++++..+.+. ...||+| +....+.. ++..+.+
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g--~~~~~i~~-~~~~~~~ 62 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIG--FNIEEIKY-KGYSLTI 62 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESS--EEEEEEEE-TTEEEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccc--cccceeee-CcEEEEE
Confidence 367899999999999999999999987654 4779998 44556666 6655543
No 125
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.01 E-value=2e-09 Score=57.69 Aligned_cols=49 Identities=27% Similarity=0.457 Sum_probs=36.3
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFL 60 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 60 (64)
...+|++++|++|+|||||++++....+. .+.||.|.+ ...+.. ++..+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~--~~~i~~-~~~~~ 60 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFN--IKTVQS-DGFKL 60 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcc--eEEEEE-CCEEE
Confidence 44799999999999999999999987664 466777733 334445 45444
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.00 E-value=2.8e-09 Score=58.21 Aligned_cols=38 Identities=21% Similarity=0.495 Sum_probs=31.1
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGV 45 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~ 45 (64)
+...+|++++|++|||||||++++..+.+. .+.||.+.
T Consensus 14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~ 51 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHP 51 (184)
T ss_pred ccccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCcccc
Confidence 355799999999999999999999988765 35567653
No 127
>KOG0096|consensus
Probab=99.00 E-value=1.7e-09 Score=60.02 Aligned_cols=54 Identities=31% Similarity=0.565 Sum_probs=46.4
Q ss_pred CCCCCCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEe
Q psy43 1 MTVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54 (64)
Q Consensus 1 m~~~~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 54 (64)
|++++.+...+|++++|+.|.|||++..|++.++|...+.+|+|.+.+.-...-
T Consensus 1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~t 54 (216)
T KOG0096|consen 1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDT 54 (216)
T ss_pred CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeec
Confidence 666666667999999999999999999999999999999999998876544433
No 128
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.97 E-value=4.2e-09 Score=56.94 Aligned_cols=38 Identities=26% Similarity=0.630 Sum_probs=32.5
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~ 47 (64)
..+||+++|++++|||||++++..+.+.. +.||++.++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~ 51 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV 51 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce
Confidence 36899999999999999999999988875 678887544
No 129
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.91 E-value=7.7e-09 Score=54.73 Aligned_cols=35 Identities=31% Similarity=0.584 Sum_probs=29.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEE
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~ 47 (64)
|++++|++|||||||++++..+.+.. +.||++.++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~ 35 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV 35 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce
Confidence 68999999999999999999988864 468887543
No 130
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.91 E-value=5.5e-09 Score=57.01 Aligned_cols=39 Identities=33% Similarity=0.322 Sum_probs=31.8
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCcee
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVG 44 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~ 44 (64)
..+...+++++|++|+|||||+++++...+...+.++.+
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~ 58 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPG 58 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCC
Confidence 345678999999999999999999998776655666654
No 131
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.91 E-value=7.1e-09 Score=55.02 Aligned_cols=35 Identities=26% Similarity=0.578 Sum_probs=29.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEE
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~ 47 (64)
|++++|+++||||+|++++..+.+. .+.||++.++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~ 35 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNV 35 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCe
Confidence 6899999999999999999888775 4568887554
No 132
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.90 E-value=8.9e-09 Score=54.83 Aligned_cols=47 Identities=21% Similarity=0.305 Sum_probs=32.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC------CCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK------FAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
+++++|++|||||||++++.... +...+.||++.++. .+.+ ++..+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~ 53 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEV-GNARLK 53 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEE-CCEEEE
Confidence 58999999999999999987532 23456778775553 3445 444433
No 133
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.88 E-value=2e-08 Score=54.55 Aligned_cols=38 Identities=34% Similarity=0.349 Sum_probs=30.6
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCcee
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVG 44 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~ 44 (64)
.....+++++|++|+|||||+++++...+...+.++.+
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~ 52 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPG 52 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCC
Confidence 36688999999999999999999998765554445544
No 134
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.88 E-value=1.2e-08 Score=53.94 Aligned_cols=35 Identities=26% Similarity=0.542 Sum_probs=29.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEE
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~ 47 (64)
|++++|++|||||||+++++...+ ..+.+|++...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~ 35 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV 35 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce
Confidence 789999999999999999998874 45678887443
No 135
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.86 E-value=3.1e-09 Score=54.05 Aligned_cols=34 Identities=35% Similarity=0.499 Sum_probs=28.7
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCC-Ccee
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISD-PTVG 44 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~-~t~~ 44 (64)
+|++++|++|+|||+|+.++....|...+. +|++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~ 35 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG 35 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh
Confidence 589999999999999999999888866555 5654
No 136
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.86 E-value=1.4e-08 Score=55.93 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=25.1
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
+..++|+++|++|||||||++++....+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~ 67 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVY 67 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhc
Confidence 34589999999999999999999987643
No 137
>PRK04213 GTP-binding protein; Provisional
Probab=98.86 E-value=1.1e-08 Score=56.24 Aligned_cols=37 Identities=32% Similarity=0.470 Sum_probs=30.7
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCcee
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVG 44 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~ 44 (64)
...++++++|+++||||||++++.+..+...+.|++.
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t 43 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT 43 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee
Confidence 4578999999999999999999998887665556553
No 138
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.85 E-value=1.2e-08 Score=55.19 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=37.0
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
++|+++|.++||||||++++.+.+..-...|....+.....+.+ ++..+.+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~-~~~~~~l 51 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKL-GDQQVEL 51 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE-TTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEe-cCceEEE
Confidence 48999999999999999999987754333344445666666777 6666654
No 139
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.82 E-value=4.5e-08 Score=60.04 Aligned_cols=52 Identities=23% Similarity=0.292 Sum_probs=39.8
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCC--CCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKF--AEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
..+|++++|+++||||||+++++.... ...+ |....++....+.+ +|..+.+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~-pgtTrd~~~~~i~~-~g~~v~l 255 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDI-KGTTRDVVEGDFEL-NGILIKL 255 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCcEEEEEEEEEEE-CCEEEEE
Confidence 458999999999999999999998653 3344 44446777788888 7776654
No 140
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.81 E-value=4.5e-08 Score=51.24 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=32.7
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEecCCeEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAE-ISDPTVGVDFFARLVTMRDGAFL 60 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~ 60 (64)
++++++|++|+|||||++++....+.. ...+....++....+.. ++.++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 51 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI-GGIPV 51 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe-CCEEE
Confidence 589999999999999999999776421 22233334454555555 55444
No 141
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.80 E-value=3.6e-08 Score=52.51 Aligned_cols=25 Identities=40% Similarity=0.531 Sum_probs=23.1
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
+++++|++++|||||++++....+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~ 26 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPE 26 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCc
Confidence 7899999999999999999988764
No 142
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.80 E-value=3.6e-08 Score=52.08 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=28.1
Q ss_pred eEEEECCCCChHHHHHHHHHc---CCCCCCCCCceeEEEEEEEEEe
Q psy43 12 RLILIGDSTVGKSSLLKYFTD---GKFAEISDPTVGVDFFARLVTM 54 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~---~~~~~~~~~t~~~~~~~~~~~~ 54 (64)
-++++|+++||||||++++.+ +.+...+.++...+.....+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~ 47 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDL 47 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEe
Confidence 589999999999999999985 3343333333333333334455
No 143
>KOG1673|consensus
Probab=98.79 E-value=4.2e-09 Score=57.17 Aligned_cols=56 Identities=25% Similarity=0.491 Sum_probs=50.4
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
.-.+|+-++|++.+|||+|+..|+++++.+.+..+.|+.+..+++.+ .|..+...|
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i-~~t~IsfSI 73 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSI-RGTDISFSI 73 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEe-cceEEEEEE
Confidence 35899999999999999999999999998889999999999999999 888776543
No 144
>KOG0073|consensus
Probab=98.78 E-value=3.6e-08 Score=53.75 Aligned_cols=52 Identities=21% Similarity=0.423 Sum_probs=41.4
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
.+.+++|+++|..++|||+++++|.... .+...||.| |..+++.+ ++.++.+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~-~~~~L~i 64 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEY-KGYTLNI 64 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEe-cceEEEE
Confidence 3458999999999999999999999765 567789998 66677777 5555443
No 145
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.78 E-value=3.4e-08 Score=52.02 Aligned_cols=42 Identities=29% Similarity=0.367 Sum_probs=30.8
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEE
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVT 53 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~ 53 (64)
+++++|++|+|||||++.+++..+.....++.+.......+.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~ 42 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFN 42 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEE
Confidence 479999999999999999997666666666655444333333
No 146
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.78 E-value=9.7e-09 Score=56.40 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=23.7
Q ss_pred eeEEEECCCCChHHHHHHHHHc--CCCCCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD--GKFAEI 38 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~--~~~~~~ 38 (64)
.+++++|++++|||||+++++. +.|...
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~ 32 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFREN 32 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCcc
Confidence 4899999999999999999987 555543
No 147
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.75 E-value=2.5e-08 Score=52.46 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=33.0
Q ss_pred EECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 15 LIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 15 ~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
++|+++||||||++++.+..+...+.+....+.....+.+ ++..+.
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~ 46 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKL-GGKEIE 46 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEee-CCeEEE
Confidence 5899999999999999987655444455555566666777 555443
No 148
>PRK15494 era GTPase Era; Provisional
Probab=98.74 E-value=7e-08 Score=57.40 Aligned_cols=50 Identities=20% Similarity=0.338 Sum_probs=34.5
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCC---CCCCCceeEEEEEEEEEecCCeEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFA---EISDPTVGVDFFARLVTMRDGAFL 60 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~ 60 (64)
....+++++|+++||||||++++++..+. .....|. +.....+.. ++.++
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr--~~~~~~~~~-~~~qi 102 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTR--SIITGIITL-KDTQV 102 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCcc--CcEEEEEEe-CCeEE
Confidence 34679999999999999999999987764 2233343 233444555 55444
No 149
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.74 E-value=5.1e-08 Score=60.01 Aligned_cols=53 Identities=26% Similarity=0.265 Sum_probs=39.5
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFA-EISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
...|++++|.++||||||+++++...+. ....+....++....+.+ ++..+.+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~-~~~~~~l 263 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL-GGKTWRF 263 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE-CCEEEEE
Confidence 4689999999999999999999987642 233444545666677777 7766643
No 150
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.72 E-value=7.7e-08 Score=50.95 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=23.3
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
.++|+++|++++|||||++++....+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~ 27 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEER 27 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccc
Confidence 47899999999999999999987653
No 151
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.72 E-value=6e-08 Score=57.99 Aligned_cols=52 Identities=23% Similarity=0.252 Sum_probs=36.7
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCC--CCCCceeEEEEEEEEEecCCeEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAE--ISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
..++++++|.+++|||||++++.+..+.. ...+|. ++..+.+.++++..+.+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~--d~~~~~i~~~~~~~i~l 241 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATL--DPTTRRLDLPDGGEVLL 241 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCcccc--CCEEEEEEeCCCceEEE
Confidence 34899999999999999999999876432 233444 45666777744554443
No 152
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.71 E-value=9.5e-08 Score=50.76 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=26.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCCCCCCce
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPTV 43 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~ 43 (64)
.++++|++++|||||++++..+.+...+.++.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~ 33 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGI 33 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCe
Confidence 48999999999999999999888766544433
No 153
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.69 E-value=1.2e-07 Score=48.21 Aligned_cols=23 Identities=43% Similarity=0.706 Sum_probs=21.0
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
+|+++|.+|+|||||++.+++..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~ 23 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK 23 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST
T ss_pred CEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999753
No 154
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.67 E-value=1.7e-07 Score=57.77 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=36.5
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFA-EISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
..+|+++|+++||||||++++++..+. ....|.+..+.....+.+ ++..+.+
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~-~~~~~~l 90 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW-NGRRFTV 90 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE-CCcEEEE
Confidence 468999999999999999999987642 233444444555555666 6655543
No 155
>KOG4423|consensus
Probab=98.66 E-value=2.4e-11 Score=67.24 Aligned_cols=52 Identities=31% Similarity=0.530 Sum_probs=45.8
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCe
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGA 58 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 58 (64)
....+|++++|+.++|||+++.|++...|...|..|||.+|..+.+.+++..
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t 73 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKT 73 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHH
Confidence 4668999999999999999999999999999999999999988877773333
No 156
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.66 E-value=1.7e-07 Score=57.54 Aligned_cols=52 Identities=23% Similarity=0.287 Sum_probs=38.1
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCC--CCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKF--AEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
..+|++++|.+++|||||+++++.... ...+ |....++....+.+ ++..+.+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~-~gtT~d~~~~~i~~-~g~~i~l 267 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDI-AGTTRDVIEEHINL-DGIPLRL 267 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCC-CCcccccEEEEEEE-CCeEEEE
Confidence 358999999999999999999998764 2233 33335677777777 7766554
No 157
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.65 E-value=3.3e-07 Score=53.46 Aligned_cols=54 Identities=15% Similarity=0.316 Sum_probs=33.8
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCC----------CCCceeEEEEEEEEEecCCeEEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEI----------SDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
..|+++|+|++|+|||||++.++....... ...+..+......+.- ++..+.|.
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e-~~~~l~Lt 66 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEE-NGVKLNLT 66 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEE-TCEEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEecc-CCcceEEE
Confidence 478999999999999999999987654332 1133333333334444 56666654
No 158
>KOG0070|consensus
Probab=98.64 E-value=2.5e-08 Score=54.83 Aligned_cols=51 Identities=22% Similarity=0.383 Sum_probs=41.3
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
...+.+|+++|-.++||||+++++-.+++... .||+| |....+.+ .+.++.
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~y-kn~~f~ 64 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEY-KNISFT 64 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEE-cceEEE
Confidence 35689999999999999999999999887654 89999 66667766 555444
No 159
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.64 E-value=5.6e-08 Score=53.75 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=24.2
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAE 37 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~ 37 (64)
.+|++++|++|+|||||++.+++..+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~ 28 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEE 28 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 3789999999999999999999865543
No 160
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.62 E-value=1.6e-07 Score=52.28 Aligned_cols=31 Identities=29% Similarity=0.559 Sum_probs=26.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCCCCCCc
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPT 42 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t 42 (64)
+++++|++++|||+|++++..+.+...+.++
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~ 32 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI 32 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE
Confidence 5899999999999999999998887665443
No 161
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.61 E-value=1.4e-07 Score=50.38 Aligned_cols=41 Identities=22% Similarity=0.466 Sum_probs=32.7
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEe
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 54 (64)
|++++|+.|+|||||++++.+... .+.-|..+.|+...+..
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~~~IDT 43 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYDNTIDT 43 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEecccEEEC
Confidence 899999999999999999998664 45556556677666665
No 162
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.59 E-value=1.9e-07 Score=47.76 Aligned_cols=39 Identities=38% Similarity=0.782 Sum_probs=29.8
Q ss_pred EECCCCChHHHHHHHHHcCCC-CCCCCCceeEEEEEEEEEe
Q psy43 15 LIGDSTVGKSSLLKYFTDGKF-AEISDPTVGVDFFARLVTM 54 (64)
Q Consensus 15 ~~G~~~~GKssl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~ 54 (64)
++|+.|+|||||++++..... .....++. .++.......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~ 40 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEV 40 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEE
Confidence 589999999999999998776 45565666 5666655554
No 163
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.58 E-value=2.8e-07 Score=55.97 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=34.4
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEecCCeEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFA-EISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
.+|+++|.+|||||||++++...... ....|.+..+.....+.+ ++..+.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~-~~~~~~ 52 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW-LGREFI 52 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE-CCcEEE
Confidence 58999999999999999999977642 122233334555566667 665444
No 164
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.58 E-value=8.1e-07 Score=51.10 Aligned_cols=29 Identities=24% Similarity=0.541 Sum_probs=25.6
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCC
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
....++|+++|.+|+|||||++.+.+...
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~ 56 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERK 56 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45679999999999999999999998654
No 165
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.56 E-value=3e-07 Score=48.96 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.8
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.|+++|++++|||||++++.+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~ 24 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK 24 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998654
No 166
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.55 E-value=5.9e-07 Score=51.04 Aligned_cols=23 Identities=48% Similarity=0.703 Sum_probs=21.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
+++++|++++|||||++++.+..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~ 24 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK 24 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 78999999999999999999765
No 167
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.55 E-value=3.4e-07 Score=55.41 Aligned_cols=50 Identities=24% Similarity=0.232 Sum_probs=33.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEecCCeEEEE
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAE-ISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
+|+++|+++||||||++++....... ...|.+..+.....+.+ ++..+.+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~-~~~~~~l 51 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW-GGREFIL 51 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE-CCeEEEE
Confidence 58999999999999999999866321 12233333455555666 6655543
No 168
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.54 E-value=8.5e-07 Score=46.47 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=23.4
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
..+++++|+.|+|||||++++.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~ 28 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKI 28 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCce
Confidence 57899999999999999999987654
No 169
>KOG0071|consensus
Probab=98.49 E-value=4.3e-07 Score=48.77 Aligned_cols=49 Identities=27% Similarity=0.448 Sum_probs=38.9
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFL 60 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 60 (64)
.++++++++|-.++||||++..+.-++. ....||+| |..+++.. .+..+
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvG--FnvetVty-kN~kf 63 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVG--FNVETVTY-KNVKF 63 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCC-cccccccc--eeEEEEEe-eeeEE
Confidence 4589999999999999999999997764 46779998 66666666 44443
No 170
>PRK11058 GTPase HflX; Provisional
Probab=98.49 E-value=4.9e-07 Score=55.36 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=30.3
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEe
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 54 (64)
.+++++|.++||||||++++....+.....+....+.....+.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l 241 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV 241 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe
Confidence 58999999999999999999986643222222223444555555
No 171
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.49 E-value=6.5e-07 Score=57.56 Aligned_cols=52 Identities=31% Similarity=0.314 Sum_probs=37.3
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCC--CCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKF--AEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
...|++++|.++||||||++++..... ...+..|. .+.....+.+ ++..+.+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT-~d~~~~~~~~-~~~~~~l 502 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTT-RDPVDEIVEI-DGEDWLF 502 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCC-cCcceeEEEE-CCCEEEE
Confidence 358999999999999999999998764 23333333 5666666667 6665543
No 172
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.48 E-value=5.5e-07 Score=47.15 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=28.5
Q ss_pred EEECCCCChHHHHHHHHHcCC--CCCCCCCceeEEEEEEEEEecCCeEE
Q psy43 14 ILIGDSTVGKSSLLKYFTDGK--FAEISDPTVGVDFFARLVTMRDGAFL 60 (64)
Q Consensus 14 ~~~G~~~~GKssl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~ 60 (64)
+++|++|+|||||+++++... +.....++. .+.....+.. ++..+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t-~~~~~~~~~~-~~~~~ 47 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVT-RDRIYGEAEW-GGREF 47 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCce-eCceeEEEEE-CCeEE
Confidence 479999999999999999764 223333332 3344445555 44443
No 173
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.48 E-value=9.6e-07 Score=54.36 Aligned_cols=52 Identities=25% Similarity=0.299 Sum_probs=40.0
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCC--CCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFA--EISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
.-+|++++|.++||||||+|.++..+-. ....-|. -|.....+.+ +|.++++
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTT-RDviee~i~i-~G~pv~l 269 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTT-RDVIEEDINL-NGIPVRL 269 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCc-cceEEEEEEE-CCEEEEE
Confidence 3589999999999999999999976532 2332333 5777788889 9988876
No 174
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.47 E-value=1e-06 Score=46.39 Aligned_cols=42 Identities=26% Similarity=0.301 Sum_probs=30.1
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEe
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 54 (64)
+++++|.+|+|||||++++....... .....|.+...+.+.+
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~ 126 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFL 126 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEe
Confidence 89999999999999999999876542 2223333344555666
No 175
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.47 E-value=1.6e-06 Score=56.41 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=32.9
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
.++++++|.++||||||++++.+.+......|.+..+.....+.. ++.++.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~-~~~~i~ 53 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST-TDHQVT 53 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc-CceEEE
Confidence 578999999999999999999876543322233333333334444 444443
No 176
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.46 E-value=8.3e-07 Score=51.22 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
+++++|.+|||||||++++.+..+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~ 26 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKIS 26 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEe
Confidence 6899999999999999999987653
No 177
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.45 E-value=1.9e-06 Score=52.26 Aligned_cols=53 Identities=19% Similarity=0.203 Sum_probs=34.8
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEecCCeEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFA-EISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
...+|++++|.+++|||||+++++..... ....+....+.....+.. ++..+.
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~~ 223 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFER-NGKKYL 223 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEE-CCcEEE
Confidence 34689999999999999999999976532 122222224454555555 555444
No 178
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.44 E-value=2.7e-06 Score=50.43 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=24.9
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCC
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
....++|+++|.+|+||||+++++++..
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~ 62 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGER 62 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999999765
No 179
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.44 E-value=1.2e-06 Score=48.25 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.2
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
++|+++|.+|+|||||++.+++...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~ 25 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREV 25 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCc
Confidence 4799999999999999999997653
No 180
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.44 E-value=5.7e-07 Score=48.00 Aligned_cols=21 Identities=48% Similarity=0.646 Sum_probs=18.8
Q ss_pred EECCCCChHHHHHHHHHcCCC
Q psy43 15 LIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 15 ~~G~~~~GKssl~~~~~~~~~ 35 (64)
++|++|+|||||++++.+..+
T Consensus 1 iiG~~~~GKStll~~l~~~~~ 21 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP 21 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc
Confidence 589999999999999998764
No 181
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.44 E-value=2.4e-06 Score=52.00 Aligned_cols=54 Identities=22% Similarity=0.207 Sum_probs=35.1
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCC-CCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKF-AEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
...++++++|.+++|||||+++++.... .....+....+.....+.. ++..+.+
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~~l 225 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFER-DGQKYTL 225 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEE-CCeeEEE
Confidence 3479999999999999999999996542 2222233333444444555 5555443
No 182
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.42 E-value=1.7e-06 Score=46.84 Aligned_cols=45 Identities=24% Similarity=0.349 Sum_probs=31.1
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEe
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 54 (64)
..++++++|.+++|||||++++....+.. ..+..+.....+.+.+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~T~~~~~~~~ 158 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAK-VGNKPGVTKGIQWIKI 158 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCEEeeeEEEEe
Confidence 45799999999999999999999877632 2222233344444444
No 183
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.40 E-value=2e-06 Score=48.12 Aligned_cols=27 Identities=41% Similarity=0.507 Sum_probs=24.0
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
+....|+++|.|+||||||++.+++..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k 48 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQK 48 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCc
Confidence 456789999999999999999999855
No 184
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.39 E-value=2.7e-06 Score=47.67 Aligned_cols=49 Identities=22% Similarity=0.226 Sum_probs=30.7
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCC----CCceeEEEEEEEEEecCCeEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEIS----DPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
++|+++|.+|+||||+.+.+++....... ..|.. .......+ +|..+.+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~--~~~~~~~~-~g~~v~V 53 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQE--CQKYSGEV-DGRQVTV 53 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS---EEEEEEE-TTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccc--cceeeeee-cceEEEE
Confidence 58999999999999999999876543322 12222 32333356 7766654
No 185
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.38 E-value=3.8e-06 Score=54.13 Aligned_cols=52 Identities=21% Similarity=0.160 Sum_probs=34.9
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEecCCeEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFA-EISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
...+|+++|.++||||||++++++.... ....|.+..+.......+ ++..+.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~-~~~~~~ 326 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEW-AGTDFK 326 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEE-CCEEEE
Confidence 4578999999999999999999976542 122344444444444455 555544
No 186
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.37 E-value=1.1e-06 Score=47.22 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=19.8
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
+++++|+.++|||||+++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~ 22 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLE 22 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHH
Confidence 689999999999999999986
No 187
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.36 E-value=5.5e-07 Score=48.95 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.4
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
-.++++|++|||||||++.+....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999998763
No 188
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.36 E-value=3.3e-06 Score=53.98 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=39.1
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
..+++++|+++||||+|+|++.+.+..-.+.|.+..|-..-.+.. .+.++++
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~-~~~~i~i 54 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKY-KGHEIEI 54 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEe-cCceEEE
Confidence 456999999999999999999987665555566666666666666 6655553
No 189
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.35 E-value=1.2e-06 Score=48.11 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.5
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
++++++|+.++|||||+++++.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~ 22 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSE 22 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHh
Confidence 4799999999999999999986
No 190
>KOG1707|consensus
Probab=98.32 E-value=1.1e-06 Score=55.49 Aligned_cols=34 Identities=32% Similarity=0.502 Sum_probs=29.7
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCC
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEIS 39 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~ 39 (64)
.....++|+++|+.|||||||+..++..+|.+..
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~V 38 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAV 38 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccc
Confidence 3456899999999999999999999999887653
No 191
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.32 E-value=3.8e-06 Score=44.72 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=32.4
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEe
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 54 (64)
...+++++|.+++|||++++++.... ...+.++.|.....+.+..
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~ 144 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKI 144 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEc
Confidence 45789999999999999999999654 3445667665443343444
No 192
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.30 E-value=4.2e-06 Score=45.03 Aligned_cols=27 Identities=15% Similarity=0.031 Sum_probs=23.2
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAEI 38 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~~ 38 (64)
+|+++|+.|+|||||++.+........
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~ 27 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIE 27 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCC
Confidence 489999999999999999988766543
No 193
>PRK00089 era GTPase Era; Reviewed
Probab=98.29 E-value=6.2e-06 Score=47.92 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.9
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
+.-.|+++|++|+|||||++++++...
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~ 30 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKI 30 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCce
Confidence 456799999999999999999997765
No 194
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.27 E-value=9.3e-06 Score=43.38 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=23.2
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
....++++|.+|||||||++++.....
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCc
Confidence 356889999999999999999987553
No 195
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.27 E-value=9.1e-07 Score=50.87 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.2
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
-+.++|+||||||||++-+++-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998644
No 196
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.27 E-value=5e-06 Score=52.75 Aligned_cols=44 Identities=25% Similarity=0.258 Sum_probs=33.8
Q ss_pred CCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 17 GDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 17 G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
|+++||||||++++.+..+...+.|.+..+.....+.. ++..+.
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~-~~~~i~ 44 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF-QGEDIE 44 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE-CCeEEE
Confidence 88999999999999988765555666666776667777 665554
No 197
>KOG3859|consensus
Probab=98.27 E-value=2.4e-06 Score=50.50 Aligned_cols=58 Identities=19% Similarity=0.293 Sum_probs=43.7
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCC----CCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAE----ISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
...+.|.|+.+|+.|.|||+|+..+....|.. ...|++.+...+..+.- .|.+++|.|
T Consensus 38 ~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqE-snvrlKLti 99 (406)
T KOG3859|consen 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQE-SNVRLKLTI 99 (406)
T ss_pred hcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhh-cCeeEEEEE
Confidence 34578999999999999999999999877764 34577766555556555 677777653
No 198
>KOG1191|consensus
Probab=98.26 E-value=3.1e-06 Score=52.66 Aligned_cols=53 Identities=25% Similarity=0.303 Sum_probs=38.6
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEecCCeEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAE-ISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
..++++++|+++||||||+|.+...+..- ...|...-|.....+++ +|.++.|
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~-~G~~v~L 320 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTV-NGVPVRL 320 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeec-CCeEEEE
Confidence 35899999999999999999999765432 22233323555667778 8888876
No 199
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.26 E-value=8.2e-06 Score=51.82 Aligned_cols=46 Identities=22% Similarity=0.144 Sum_probs=34.8
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEe
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 54 (64)
...+++++|..++|||||++++....+...+.+.+..+.....+.+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~ 131 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVEN 131 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEE
Confidence 5689999999999999999999988877655554444444445555
No 200
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.24 E-value=1.4e-06 Score=52.11 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
-++++|++||||||+++.+++-..+
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~ 55 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEP 55 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3899999999999999999975543
No 201
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.22 E-value=8.1e-06 Score=49.26 Aligned_cols=55 Identities=18% Similarity=0.392 Sum_probs=37.9
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCC----------CCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEI----------SDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...|.+.++|++|.|||||++.++....... ..+++.+..+...+.- +|..+.|.
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e-~~~~~~l~ 85 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEE-DGFHLNLT 85 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeec-CCeEEEEE
Confidence 4578999999999999999999986633222 3466665555555544 55555543
No 202
>KOG2655|consensus
Probab=98.19 E-value=8.8e-06 Score=49.13 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=36.2
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCC---------CCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEI---------SDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...|.+.++|++|.|||||++.++...+..+ ...|+.++.+...+.- +|..+.|.
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee-~g~~l~Lt 82 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEE-NGVKLNLT 82 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecC-CCeEEeeE
Confidence 3469999999999999999999876644332 2235554444444433 56665554
No 203
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.17 E-value=1.4e-05 Score=50.74 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=34.5
Q ss_pred eEEEECCCCChHHHHHHHHHc---CCCCCCCCCceeEEEEEEEEEecCCeEE
Q psy43 12 RLILIGDSTVGKSSLLKYFTD---GKFAEISDPTVGVDFFARLVTMRDGAFL 60 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 60 (64)
.|+++|..++|||||++++.+ +.+..++.+++..++....+.. ++..+
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v 52 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRL 52 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEE
Confidence 589999999999999999985 4455555566656665555666 55443
No 204
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.16 E-value=2.6e-06 Score=45.72 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=20.0
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
+|+++|.+++|||||++++.+.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~ 24 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGN 24 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 7999999999999999997753
No 205
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.16 E-value=7.2e-06 Score=50.51 Aligned_cols=53 Identities=21% Similarity=0.176 Sum_probs=38.1
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFA-EISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
..+|++++|.+++|||||++++++.+-. -...+....|.....++. +++.+.+
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~-~~~~~~l 230 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFER-DGRKYVL 230 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEE-CCeEEEE
Confidence 4699999999999999999999976532 222333334666667777 7776654
No 206
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.16 E-value=1.1e-05 Score=50.39 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=22.6
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
..+|+++|.+++|||||++++...+.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akp 184 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKP 184 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCc
Confidence 46799999999999999999987543
No 207
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.15 E-value=3.1e-06 Score=50.87 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.7
Q ss_pred EEEECCCCChHHHHHHHHHcCCCC
Q psy43 13 LILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
+.++|+|||||||++..+++-..+
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~p 57 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQP 57 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 679999999999999999975443
No 208
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.15 E-value=5.7e-06 Score=50.93 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=31.9
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEecCCeEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAE-ISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
..|+++|.++||||||+||++..+..- +-.|.+.-|-......+ .+..+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~-~~~~f~ 54 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW-LGREFI 54 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEE-cCceEE
Confidence 579999999999999999999876432 11133323443444445 444443
No 209
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.14 E-value=1.4e-05 Score=47.58 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.2
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
...|+++|.+++|||||++++....
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~ 181 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAK 181 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCC
Confidence 3678999999999999999999764
No 210
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.14 E-value=7e-06 Score=46.90 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=18.6
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
=-+++||+|||||||+..+-.-
T Consensus 35 VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhh
Confidence 3579999999999999988643
No 211
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.13 E-value=1.9e-05 Score=47.21 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.4
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
..|.++|.+++|||||++++...+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~ 182 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK 182 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC
Confidence 568999999999999999998654
No 212
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.12 E-value=2.9e-06 Score=43.27 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.8
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.|++.|++|+||||+...++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999864
No 213
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.12 E-value=4e-06 Score=45.74 Aligned_cols=46 Identities=26% Similarity=0.411 Sum_probs=29.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
++++-|++|+||||++.+++..- .....+.-| |++..+.- +|.++-
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l-~~~~~~v~G--f~t~evr~-~g~r~G 46 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL-KKKGLPVGG--FYTEEVRE-NGRRIG 46 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH-HHTCGGEEE--EEEEEEET-TSSEEE
T ss_pred CEEEECcCCCCHHHHHHHHHHHh-hccCCccce--EEeecccC-CCceEE
Confidence 68999999999999999987432 111223444 66666654 555543
No 214
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.11 E-value=3.9e-05 Score=44.85 Aligned_cols=27 Identities=33% Similarity=0.544 Sum_probs=24.0
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
..++++++|.++||||||++++.....
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~ 146 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKI 146 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCc
Confidence 458999999999999999999997654
No 215
>KOG3883|consensus
Probab=98.11 E-value=1e-05 Score=44.13 Aligned_cols=50 Identities=24% Similarity=0.404 Sum_probs=39.3
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCC--CCCCCceeEEEEEEEEEecCCeE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFA--EISDPTVGVDFFARLVTMRDGAF 59 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~ 59 (64)
+..|++++|--+||||+++.+++.+... ..+.||+. |.|.-.++-+.|.+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgar 59 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAR 59 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChh
Confidence 4679999999999999999998866544 35779994 88888877754533
No 216
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.11 E-value=2.6e-05 Score=42.65 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.1
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
.++++++|.+++|||||++++.....
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~ 142 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRA 142 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccc
Confidence 47999999999999999999997543
No 217
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.11 E-value=3.4e-06 Score=46.65 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=20.8
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAE 37 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~ 37 (64)
--++++|++|+|||+|+.++..+....
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~ 30 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVP 30 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCC
Confidence 468999999999999999999986654
No 218
>KOG0075|consensus
Probab=98.10 E-value=6.3e-07 Score=48.45 Aligned_cols=52 Identities=31% Similarity=0.425 Sum_probs=42.0
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
..++.+.++|-.++|||||++..+.+.+.+.-.||+| |..+.+.- ++..+++
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvG--fnmrk~tk-gnvtikl 69 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVG--FNMRKVTK-GNVTIKL 69 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhccccc--ceeEEecc-CceEEEE
Confidence 3468899999999999999999999999999999999 44455555 5555544
No 219
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.10 E-value=6.6e-06 Score=48.87 Aligned_cols=36 Identities=31% Similarity=0.518 Sum_probs=27.8
Q ss_pred EEEECCCCChHHHHHHHHHcCCCC------CCCCCceeEEEE
Q psy43 13 LILIGDSTVGKSSLLKYFTDGKFA------EISDPTVGVDFF 48 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~~~~~------~~~~~t~~~~~~ 48 (64)
+.++|.++||||||++++....+. ....|++|..+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~ 42 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYV 42 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEE
Confidence 478999999999999999987643 234677775554
No 220
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.09 E-value=4.6e-06 Score=47.28 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.1
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
-++++|++|||||||++-.++--
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCc
Confidence 47999999999999999988643
No 221
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.09 E-value=3.3e-05 Score=44.91 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=23.8
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
..++++++|.++||||||++++.....
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~ 143 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKV 143 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 458899999999999999999987653
No 222
>PRK08118 topology modulation protein; Reviewed
Probab=98.08 E-value=4.1e-06 Score=45.52 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.3
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.||+++|++|+|||||...+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999988753
No 223
>PRK07261 topology modulation protein; Provisional
Probab=98.07 E-value=4.8e-06 Score=45.37 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=20.2
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+++++|.+|+|||||...+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998743
No 224
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.07 E-value=2.9e-05 Score=47.76 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.7
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
..|+++|.++||||||++++...+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak 182 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAK 182 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCC
Confidence 379999999999999999999765
No 225
>KOG0074|consensus
Probab=98.07 E-value=1.1e-05 Score=43.46 Aligned_cols=47 Identities=30% Similarity=0.513 Sum_probs=37.7
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCC
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 57 (64)
...++|++++|-.++|||+|+.++.... +..-.||.| |..+.+.. ++
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~G--Fn~k~v~~-~g 60 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNG--FNTKKVEY-DG 60 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCC-hhhccccCC--cceEEEee-cC
Confidence 4678999999999999999999998654 445668888 66777776 44
No 226
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.07 E-value=4.8e-06 Score=45.85 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=21.1
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.|++++|++|+||||+..+++..
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 227
>PRK12288 GTPase RsgA; Reviewed
Probab=98.06 E-value=3.7e-06 Score=50.41 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
-++++|.+|||||||++++....
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc
Confidence 37899999999999999998654
No 228
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.06 E-value=3.1e-05 Score=50.69 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=36.6
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
.....|+++|..++|||||++++....+.....+.+..+.....+.+ ++..+.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~-~~~~It 340 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET-NGGKIT 340 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE-CCEEEE
Confidence 45688999999999999999999887776544444433333344555 555444
No 229
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.06 E-value=1.4e-05 Score=42.73 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEECCCCChHHHHHHHHHcCCC
Q psy43 13 LILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~~~~ 35 (64)
|+++|..++|||||++.+++...
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~i 23 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPI 23 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-
T ss_pred CEEEcCCCCCHHHHHHHHHhccc
Confidence 68999999999999999998763
No 230
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.05 E-value=4.5e-05 Score=49.45 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=24.2
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
++.++|+++|.+|+||||+++.+++..
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGek 142 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEV 142 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccc
Confidence 456899999999999999999999765
No 231
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.04 E-value=2.9e-05 Score=47.27 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.4
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
..|.++|.+++|||||++++...+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k 183 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAK 183 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCc
Confidence 378999999999999999998654
No 232
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.03 E-value=7.6e-06 Score=46.68 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=21.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
.++++|+||+|||||++++..-+-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~ 54 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEP 54 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCC
Confidence 5899999999999999999865543
No 233
>COG1159 Era GTPase [General function prediction only]
Probab=98.02 E-value=1e-05 Score=47.63 Aligned_cols=29 Identities=31% Similarity=0.347 Sum_probs=25.1
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
.+.-.++++|.++||||||++++++.+..
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~Kis 32 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKIS 32 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceE
Confidence 45678999999999999999999987643
No 234
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.02 E-value=7.3e-06 Score=46.43 Aligned_cols=26 Identities=35% Similarity=0.687 Sum_probs=23.1
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAE 37 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~ 37 (64)
|++++|+.++|||||+.+|..+.|..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~ 26 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDN 26 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCC
Confidence 68999999999999999999877654
No 235
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.02 E-value=2.1e-05 Score=43.13 Aligned_cols=51 Identities=20% Similarity=0.248 Sum_probs=36.1
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
..+|+.+-|++|+||||++.+++..--... -++| -|++.++.- +|+++-+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvg-Gf~t~EVR~-gGkR~GF~ 54 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVG-GFITPEVRE-GGKRIGFK 54 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceee-eEEeeeeec-CCeEeeeE
Confidence 368999999999999999999885322111 2443 477777776 77766543
No 236
>PTZ00258 GTP-binding protein; Provisional
Probab=98.02 E-value=1.7e-05 Score=48.33 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=24.1
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
...+++.++|.+++|||||++.+.....
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~ 46 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQV 46 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcc
Confidence 4568999999999999999999976543
No 237
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.02 E-value=6.2e-06 Score=47.01 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.2
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
-++++|++|+|||||++.+..-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999988644
No 238
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.01 E-value=2.3e-05 Score=47.80 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.6
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
+|+.++|.+++|||||++++....+.
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~ 27 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVE 27 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc
Confidence 68999999999999999999987654
No 239
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.01 E-value=6.9e-06 Score=45.08 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.9
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999764
No 240
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.99 E-value=6.9e-06 Score=42.68 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||+|++.+++..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999887643
No 241
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.98 E-value=3.1e-05 Score=43.50 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58899999999999999988754
No 242
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.97 E-value=3e-05 Score=39.99 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=18.8
Q ss_pred EECCCCChHHHHHHHHHcCCCC
Q psy43 15 LIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 15 ~~G~~~~GKssl~~~~~~~~~~ 36 (64)
++|+.|+|||||++++......
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~ 22 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVA 22 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccc
Confidence 5799999999999999876544
No 243
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.97 E-value=8e-06 Score=47.36 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=18.9
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-+.++|++|||||||++.+..
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368999999999999999875
No 244
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.97 E-value=1.8e-05 Score=44.19 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=22.6
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcC
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
+....-++++|++|||||||+..+...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 445677889999999999999999754
No 245
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.97 E-value=7.8e-06 Score=42.64 Aligned_cols=20 Identities=40% Similarity=0.579 Sum_probs=18.2
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy43 13 LILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~ 32 (64)
++++|++|+||||++..+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999873
No 246
>PRK12289 GTPase RsgA; Reviewed
Probab=97.96 E-value=7.4e-06 Score=49.26 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|.+|||||||++.+....
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 37999999999999999998653
No 247
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.96 E-value=8e-06 Score=46.84 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.0
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
-..+++|.+|||||||++++....
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh
Confidence 368899999999999999998653
No 248
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.96 E-value=9.2e-06 Score=43.59 Aligned_cols=22 Identities=23% Similarity=0.626 Sum_probs=17.5
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
||++.|..++|||||+..+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999854
No 249
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.96 E-value=6.3e-06 Score=48.67 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.3
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-.+++|.+|||||||++++..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCc
Confidence 578999999999999999975
No 250
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.94 E-value=1.1e-05 Score=44.30 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=18.9
Q ss_pred eeEEEECCCCChHHHHHHHHH
Q psy43 11 FRLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~ 31 (64)
-.++++|++|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999875
No 251
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.93 E-value=3.3e-05 Score=46.75 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=22.3
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
+++.++|.+++|||||++.+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~ 26 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG 26 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998765
No 252
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.91 E-value=1.2e-05 Score=44.80 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=20.9
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.=+++.||+|+||||++..+....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 347899999999999999998765
No 253
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.91 E-value=1.5e-05 Score=48.38 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.0
Q ss_pred eeeeEEEECCCCChHHHHHHHHHc
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..++|+|.|++|+|||||+|.+.+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrG 57 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRG 57 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999999999975
No 254
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.91 E-value=1.4e-05 Score=43.43 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.4
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+||||+++.++..
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998754
No 255
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.91 E-value=1.4e-05 Score=42.15 Aligned_cols=21 Identities=48% Similarity=0.699 Sum_probs=19.0
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy43 13 LILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~~ 33 (64)
++++|++|+|||+|++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 256
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.90 E-value=1.5e-05 Score=44.51 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 67999999999999999998653
No 257
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.90 E-value=1.4e-05 Score=40.91 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.0
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy43 13 LILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~~ 33 (64)
+++.|++|+|||+++..++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998864
No 258
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.89 E-value=1.8e-05 Score=40.05 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=22.2
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
-.+++.|++|+|||+++..++..-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 36899999999999999999876544
No 259
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.89 E-value=1.5e-05 Score=43.21 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.9
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||+..++..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999864
No 260
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.89 E-value=6.4e-05 Score=43.06 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.8
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++..
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999999754
No 261
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.89 E-value=8.2e-05 Score=44.60 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=24.7
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
....+++.|.++||||||+..+.+.+..
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpE 194 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPE 194 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCc
Confidence 4678999999999999999999987654
No 262
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.89 E-value=6.3e-05 Score=47.96 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.5
Q ss_pred eeeEEEECCCCChHHHHHHHHHcC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
..+++++|..++|||||+.+++..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~ 26 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEY 26 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 263
>KOG1547|consensus
Probab=97.88 E-value=5.7e-05 Score=44.05 Aligned_cols=55 Identities=18% Similarity=0.372 Sum_probs=36.0
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCC---------CCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAE---------ISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~---------~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.+.|.+.++|.+|.|||+|++.+....... .+..|+.+......+.- ++.+.+|.
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE-~gVklklt 107 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEE-KGVKLKLT 107 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeee-cceEEEEE
Confidence 468999999999999999999876433222 23344444444455555 66666554
No 264
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.88 E-value=1.4e-05 Score=43.79 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.6
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
..++++|.+|+|||||++.+....
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998744
No 265
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.88 E-value=1.5e-05 Score=45.94 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=19.5
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-++++|++|+|||||++.+..
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999987
No 266
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.87 E-value=7.1e-05 Score=42.69 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 32 ITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 57899999999999999998754
No 267
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.87 E-value=1.8e-05 Score=44.13 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998753
No 268
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.87 E-value=1.8e-05 Score=43.84 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 269
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.87 E-value=7.1e-05 Score=42.68 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998753
No 270
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.86 E-value=1.7e-05 Score=40.56 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=18.8
Q ss_pred eeEEEECCCCChHHHHHHHHH
Q psy43 11 FRLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~ 31 (64)
-.++++|++|+|||+|+..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 358999999999999999976
No 271
>PRK10218 GTP-binding protein; Provisional
Probab=97.86 E-value=9.5e-05 Score=47.32 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.9
Q ss_pred eeeeEEEECCCCChHHHHHHHHHc
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...+|+++|..++|||||+.+++.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~ 27 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQ 27 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHH
Confidence 357899999999999999999986
No 272
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.85 E-value=8.2e-05 Score=42.49 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 67899999999999999998653
No 273
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.85 E-value=3.3e-05 Score=42.49 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68899999999999999988754
No 274
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.85 E-value=1.6e-05 Score=41.47 Aligned_cols=20 Identities=25% Similarity=0.581 Sum_probs=18.2
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy43 13 LILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~ 32 (64)
|++.|++|+|||+|+..++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998874
No 275
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.85 E-value=2e-05 Score=44.48 Aligned_cols=23 Identities=39% Similarity=0.470 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998643
No 276
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.85 E-value=2.1e-05 Score=43.69 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998643
No 277
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.85 E-value=2e-05 Score=44.57 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.9
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999998864
No 278
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.85 E-value=2.6e-05 Score=36.29 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=18.0
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-.++.|++|+|||||+..+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999987653
No 279
>PRK00098 GTPase RsgA; Reviewed
Probab=97.84 E-value=1.9e-05 Score=46.36 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=21.0
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
..++++|.+|||||||++.+....
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999998654
No 280
>PRK06217 hypothetical protein; Validated
Probab=97.84 E-value=2.4e-05 Score=42.86 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.7
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+|+++|.+|+||||+..++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999854
No 281
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.84 E-value=2.7e-05 Score=43.78 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=22.4
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAE 37 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~ 37 (64)
-.++++|++|+|||||++-+++-..+.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~P~ 52 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFETPA 52 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccCCC
Confidence 368999999999999999998655443
No 282
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.84 E-value=2.3e-05 Score=43.36 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 283
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.83 E-value=2.3e-05 Score=43.72 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.2
Q ss_pred eeeEEEECCCCChHHHHHHHHHcC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
++++.++|+.|+|||||+.++...
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999998753
No 284
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.83 E-value=2.1e-05 Score=43.76 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999864
No 285
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.83 E-value=2.2e-05 Score=43.86 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999987653
No 286
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.83 E-value=2.4e-05 Score=43.49 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998653
No 287
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.83 E-value=2.4e-05 Score=43.45 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999753
No 288
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.83 E-value=2.4e-05 Score=43.49 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 289
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.83 E-value=2.4e-05 Score=43.76 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=20.1
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 290
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.83 E-value=3.5e-05 Score=45.03 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.8
Q ss_pred EEEECCCCChHHHHHHHHHcCCCC
Q psy43 13 LILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
+.++|.+++|||||++.+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~ 24 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAE 24 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCc
Confidence 468999999999999999986653
No 291
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.83 E-value=8.6e-05 Score=44.25 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.8
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
+++++|++|+|||+|+..+++..
T Consensus 110 ~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 110 VTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998654
No 292
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.83 E-value=8.7e-05 Score=42.82 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 48 ~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 48 ITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 57899999999999999998754
No 293
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.82 E-value=2.4e-05 Score=43.85 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.7
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 294
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.82 E-value=2.3e-05 Score=43.32 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.5
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.=++++|++|+|||+|+.+++..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999864
No 295
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.82 E-value=1.9e-05 Score=42.58 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=16.3
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.--+++.|++|+|||+|+.++..
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998764
No 296
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.82 E-value=2.5e-05 Score=43.95 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998653
No 297
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.81 E-value=2.6e-05 Score=43.57 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 298
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.81 E-value=2.7e-05 Score=43.36 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999988653
No 299
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.81 E-value=5.7e-05 Score=48.44 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.1
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
-+++++|++|+|||||++.+++-.
T Consensus 480 e~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 480 EFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998643
No 300
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.80 E-value=2.5e-05 Score=42.84 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+.+-.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988643
No 301
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.80 E-value=2.4e-05 Score=43.25 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.3
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.-++++|++|+|||+|+..++..
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999998764
No 302
>KOG0077|consensus
Probab=97.80 E-value=2e-05 Score=43.33 Aligned_cols=36 Identities=25% Similarity=0.500 Sum_probs=29.0
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCce
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTV 43 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~ 43 (64)
+.+.-|++++|-.++|||||++.+-+++.. ++.||.
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTl 52 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTL 52 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHcccccc-ccCCCc
Confidence 345679999999999999999999887753 455665
No 303
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=2.8e-05 Score=43.90 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998753
No 304
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.80 E-value=0.00012 Score=41.97 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 40 ~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 40 VTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
No 305
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.80 E-value=3.5e-05 Score=42.91 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=20.9
Q ss_pred eeeeEEEECCCCChHHHHHHHHHc
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...-+.+.|++|+|||||++.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999875
No 306
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.80 E-value=2.9e-05 Score=43.25 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.9
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999864
No 307
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=2.8e-05 Score=44.67 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998653
No 308
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.80 E-value=2.8e-05 Score=44.75 Aligned_cols=25 Identities=36% Similarity=0.639 Sum_probs=21.7
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHc
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...++++++|.+|+|||+|+..+..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999888764
No 309
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.79 E-value=2.9e-05 Score=43.46 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
No 310
>PF05729 NACHT: NACHT domain
Probab=97.79 E-value=2.6e-05 Score=41.20 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=18.3
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy43 13 LILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~ 32 (64)
+++.|++|+|||+++.+++.
T Consensus 3 l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 68999999999999999874
No 311
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.79 E-value=2.6e-05 Score=43.98 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.0
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5889999999999999999864
No 312
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.79 E-value=6e-05 Score=47.56 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=28.7
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCC----CCCCceeEEEEEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAE----ISDPTVGVDFFARLV 52 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~----~~~~t~~~~~~~~~~ 52 (64)
=||+++|++|+|||||++.+.+..-+. ...+++.+.++.+..
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~ 394 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHR 394 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehh
Confidence 489999999999999999996543322 223444445665544
No 313
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.79 E-value=3e-05 Score=43.26 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999998753
No 314
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.79 E-value=0.0001 Score=46.07 Aligned_cols=23 Identities=30% Similarity=0.247 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++--
T Consensus 37 ~~~iiG~nGsGKSTLl~~i~G~~ 59 (529)
T PRK15134 37 TLALVGESGSGKSVTALSILRLL 59 (529)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999998654
No 315
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.78 E-value=4.3e-05 Score=42.84 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=20.9
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
-.++++|++|+|||||++.+++-.
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 368899999999999999998654
No 316
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.78 E-value=2.9e-05 Score=43.89 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
No 317
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.78 E-value=3.5e-05 Score=41.09 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.0
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
...+++++|.+++|||||++.+....
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~ 124 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKL 124 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccc
Confidence 45789999999999999999999754
No 318
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.78 E-value=3.1e-05 Score=43.77 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999998643
No 319
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.78 E-value=4.8e-05 Score=42.11 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988654
No 320
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.78 E-value=0.00012 Score=47.77 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=27.0
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEIS 39 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~ 39 (64)
.....|+++|..++|||||+.++....+....
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e 273 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKE 273 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcccc
Confidence 35679999999999999999999987776543
No 321
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.78 E-value=2.9e-05 Score=43.25 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999988653
No 322
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.77 E-value=3.2e-05 Score=44.57 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999998753
No 323
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.77 E-value=2.6e-05 Score=40.04 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=18.2
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
--+++.|++|+|||+++.++...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999864
No 324
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.77 E-value=3e-05 Score=45.37 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.4
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
..++++|++|+|||||++.+.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 478999999999999999998654
No 325
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.77 E-value=3.3e-05 Score=43.54 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998653
No 326
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.77 E-value=3.5e-05 Score=42.85 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 327
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.76 E-value=3.5e-05 Score=43.06 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998754
No 328
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.76 E-value=0.00016 Score=43.12 Aligned_cols=44 Identities=25% Similarity=0.386 Sum_probs=31.4
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEe
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFA-EISDPTVGVDFFARLVTM 54 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~ 54 (64)
...++.++|-++||||||++++++.... ....| |..-..+.+.+
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~ 175 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKL 175 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEc
Confidence 3578999999999999999999986652 12223 44445555555
No 329
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.76 E-value=0.00013 Score=42.20 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 52 ~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 52 VTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68899999999999999998753
No 330
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.76 E-value=0.00015 Score=42.18 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 49 ~~~I~G~nGsGKSTLl~~l~Gl~ 71 (276)
T PRK14271 49 VTSLMGPTGSGKTTFLRTLNRMN 71 (276)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999998753
No 331
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.76 E-value=3.1e-05 Score=43.25 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
+++++|..++|||||+.+++...
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~ 24 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQT 24 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Confidence 68999999999999999998644
No 332
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.76 E-value=3.5e-05 Score=43.65 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998653
No 333
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.76 E-value=5.8e-05 Score=40.71 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999998754
No 334
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.76 E-value=3.4e-05 Score=43.39 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=21.0
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
-.++++|++|+|||||++.+++-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999988654
No 335
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.76 E-value=5.5e-05 Score=41.73 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.8
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 336
>PRK13695 putative NTPase; Provisional
Probab=97.75 E-value=3.5e-05 Score=41.79 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.5
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
+|+++.|++|+|||||+..+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998653
No 337
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.75 E-value=4.1e-05 Score=44.97 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=25.5
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCC
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
...++++++.|..|+||||+++.+..+...
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~ 65 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVK 65 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCc
Confidence 346789999999999999999999965543
No 338
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.75 E-value=3.8e-05 Score=42.62 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999998653
No 339
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.75 E-value=3.7e-05 Score=44.08 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 340
>PRK10908 cell division protein FtsE; Provisional
Probab=97.75 E-value=5.6e-05 Score=42.36 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999998643
No 341
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.75 E-value=3.7e-05 Score=43.84 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 342
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.75 E-value=3.3e-05 Score=42.61 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=18.5
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy43 13 LILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~~ 33 (64)
+.+.|++|+|||||++.+...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999998753
No 343
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.74 E-value=4.2e-05 Score=41.69 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.8
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+.++|++|+|||||++.+++-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 344
>PRK03839 putative kinase; Provisional
Probab=97.74 E-value=3.7e-05 Score=41.85 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.7
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
+|+++|.+|+||||+..+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988753
No 345
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.74 E-value=4.3e-05 Score=42.50 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=21.4
Q ss_pred eeeeEEEECCCCChHHHHHHHHHc
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..+.|.+.|++|+|||||...+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998875
No 346
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.74 E-value=3.9e-05 Score=43.46 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999998753
No 347
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.74 E-value=4.2e-05 Score=42.25 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999988754
No 348
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.74 E-value=3.9e-05 Score=43.73 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.0
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999864
No 349
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=4e-05 Score=43.44 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998653
No 350
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.73 E-value=4.5e-05 Score=35.83 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=18.7
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy43 13 LILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~~ 33 (64)
+++.|++|+|||++.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998864
No 351
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=4.1e-05 Score=43.01 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 48899999999999999998654
No 352
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.73 E-value=4.2e-05 Score=43.26 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999998653
No 353
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=4.3e-05 Score=42.49 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998653
No 354
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.73 E-value=5.3e-05 Score=47.19 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.5
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
-+++++|++|+|||||++.+.+-
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999854
No 355
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.73 E-value=0.00016 Score=43.48 Aligned_cols=25 Identities=40% Similarity=0.573 Sum_probs=22.0
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.-.++++|.+++|||||++.+.+..
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~ 87 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTK 87 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCC
Confidence 4679999999999999999998654
No 356
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.72 E-value=6.6e-05 Score=41.79 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=20.7
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999998754
No 357
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=3.7e-05 Score=42.71 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.7
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccC
Confidence 68899999999999999988754
No 358
>KOG1707|consensus
Probab=97.72 E-value=0.00015 Score=46.17 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=40.2
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAF 59 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 59 (64)
...-+.+.++|+.++|||.+++.|.++.+...+..+....+-...+.. .|+.
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~-~g~~ 473 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEV-KGQQ 473 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeee-cccc
Confidence 445799999999999999999999998888766666655555566666 4443
No 359
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.72 E-value=4.4e-05 Score=43.44 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998643
No 360
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.72 E-value=6.7e-05 Score=41.65 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67999999999999999998754
No 361
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.72 E-value=4e-05 Score=43.07 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.7
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 362
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=4.7e-05 Score=41.30 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999988753
No 363
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.72 E-value=5.2e-05 Score=45.67 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.1
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+++++|.+|||||||++++...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999874
No 364
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=4.5e-05 Score=42.54 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.0
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
-.++++|++|+|||||++.+++-.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998653
No 365
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.72 E-value=4.1e-05 Score=39.13 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.7
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
--+++.|++|+|||+++..++..-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999988653
No 366
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.71 E-value=4.6e-05 Score=42.89 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 57999999999999999998753
No 367
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.71 E-value=4.9e-05 Score=41.11 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 368
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.71 E-value=4.5e-05 Score=43.44 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998653
No 369
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.71 E-value=4.3e-05 Score=41.50 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=19.3
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
-.++++|.+|+||||++.+++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999998873
No 370
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.71 E-value=4.7e-05 Score=43.22 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998643
No 371
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.71 E-value=4.9e-05 Score=41.37 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998754
No 372
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=4.2e-05 Score=44.15 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58899999999999999988643
No 373
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=5.8e-05 Score=45.41 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 32 ~~~llG~sGsGKSTLLr~iaGl~ 54 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGLE 54 (356)
T ss_pred EEEEECCCCCcHHHHHHHHHCCC
Confidence 47899999999999999998754
No 374
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.71 E-value=4.7e-05 Score=42.57 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998753
No 375
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.71 E-value=4.7e-05 Score=43.88 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999988653
No 376
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.71 E-value=4.5e-05 Score=44.08 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
No 377
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=4.6e-05 Score=44.41 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998654
No 378
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.71 E-value=7.2e-05 Score=40.90 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 379
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.70 E-value=4.8e-05 Score=43.23 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998743
No 380
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.70 E-value=5e-05 Score=42.10 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.0
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
-.+.++|++|+|||||++.+++-.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999988653
No 381
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=5.7e-05 Score=47.71 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.2
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
=|++++|++||||||+++-++..-
T Consensus 365 EkvAIlG~SGsGKSTllqLl~~~~ 388 (573)
T COG4987 365 EKVAILGRSGSGKSTLLQLLAGAW 388 (573)
T ss_pred CeEEEECCCCCCHHHHHHHHHhcc
Confidence 389999999999999999998643
No 382
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.70 E-value=4.7e-05 Score=43.91 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998654
No 383
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.70 E-value=4.8e-05 Score=43.33 Aligned_cols=22 Identities=41% Similarity=0.448 Sum_probs=20.0
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+.++|++|+|||||++.+++-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999864
No 384
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.70 E-value=5.1e-05 Score=42.90 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998654
No 385
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=4.8e-05 Score=44.86 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.7
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999998753
No 386
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.70 E-value=4.7e-05 Score=43.61 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999998643
No 387
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=4.7e-05 Score=44.09 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
No 388
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.69 E-value=5.1e-05 Score=43.56 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.1
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+.++|++|+|||||++.+++-
T Consensus 32 ~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 389
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.69 E-value=8.2e-05 Score=40.61 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998743
No 390
>PRK14530 adenylate kinase; Provisional
Probab=97.69 E-value=5.2e-05 Score=42.47 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=19.4
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
+|+++|++|+||||+...++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999874
No 391
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.69 E-value=5e-05 Score=42.86 Aligned_cols=23 Identities=30% Similarity=0.202 Sum_probs=20.7
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999754
No 392
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.69 E-value=5e-05 Score=42.33 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=19.4
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+++.|++|||||+|+..++.-
T Consensus 31 ~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhc
Confidence 5789999999999999998853
No 393
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=5.4e-05 Score=41.75 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.0
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 394
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.69 E-value=5.3e-05 Score=42.98 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.0
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
-.++++|++|+|||||++.+++..
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999998753
No 395
>PF13173 AAA_14: AAA domain
Probab=97.69 E-value=5.3e-05 Score=39.32 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
-+++.|+.+||||+++.+++....
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 478899999999999999986543
No 396
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=5e-05 Score=43.32 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68899999999999999998753
No 397
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=6.6e-05 Score=45.14 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 34 ~~~llGpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred EEEEECCCCCcHHHHHHHHHCCC
Confidence 57999999999999999998654
No 398
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.68 E-value=5.3e-05 Score=42.59 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 57999999999999999998654
No 399
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.68 E-value=5.3e-05 Score=42.79 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999998654
No 400
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.68 E-value=5.3e-05 Score=43.39 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 401
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.68 E-value=0.00021 Score=42.04 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++..
T Consensus 73 ~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 73 VTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 57899999999999999998753
No 402
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.68 E-value=5.2e-05 Score=43.25 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998643
No 403
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.68 E-value=5.2e-05 Score=44.50 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 404
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.68 E-value=7.2e-05 Score=39.67 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 57899999999999999998754
No 405
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.68 E-value=5.2e-05 Score=43.79 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998653
No 406
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.68 E-value=5.3e-05 Score=43.62 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999998753
No 407
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=5.4e-05 Score=43.74 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998654
No 408
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.68 E-value=5.3e-05 Score=43.76 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.1
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 41 ~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 41 VTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999875
No 409
>PRK14532 adenylate kinase; Provisional
Probab=97.68 E-value=5.6e-05 Score=41.34 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.5
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
+++++|++|+||||+..+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999975
No 410
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=5.6e-05 Score=42.64 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 67899999999999999998754
No 411
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=5.6e-05 Score=42.58 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58899999999999999998654
No 412
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.68 E-value=5.4e-05 Score=44.42 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
No 413
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.67 E-value=3.8e-05 Score=41.11 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=18.3
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy43 13 LILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~~ 33 (64)
++++|++|+||||+...+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999998754
No 414
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.67 E-value=6.6e-05 Score=44.82 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
-++++|++|+|||||++.+++-..+
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAGLe~p 54 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAGLETP 54 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhCcCCC
Confidence 4789999999999999999876543
No 415
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.67 E-value=5.9e-05 Score=42.13 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58899999999999999998654
No 416
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.67 E-value=5.6e-05 Score=42.66 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
No 417
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.67 E-value=5.1e-05 Score=43.08 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999998875
No 418
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.67 E-value=5.8e-05 Score=43.33 Aligned_cols=22 Identities=41% Similarity=0.529 Sum_probs=20.0
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 41 ~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 41 VTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999865
No 419
>PRK13796 GTPase YqeH; Provisional
Probab=97.67 E-value=6.3e-05 Score=45.41 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.7
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+++++|.+|||||||++++...
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh
Confidence 47999999999999999999853
No 420
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.67 E-value=5.8e-05 Score=43.18 Aligned_cols=23 Identities=30% Similarity=0.140 Sum_probs=20.7
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998754
No 421
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.66 E-value=5.4e-05 Score=43.09 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998654
No 422
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.66 E-value=5.9e-05 Score=42.52 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++.
T Consensus 50 ~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
No 423
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=5.3e-05 Score=43.62 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 67899999999999999988643
No 424
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.66 E-value=6.5e-05 Score=40.76 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||+..+++-.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 57899999999999999998753
No 425
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.66 E-value=6.1e-05 Score=42.90 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=20.0
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+.++|++|+|||||++.+++-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999874
No 426
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.66 E-value=5.4e-05 Score=38.55 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=18.3
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy43 13 LILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~~ 33 (64)
|++.|.+|+||||++..+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999987654
No 427
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=6e-05 Score=43.91 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.7
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998653
No 428
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.66 E-value=0.00011 Score=45.93 Aligned_cols=26 Identities=35% Similarity=0.678 Sum_probs=21.3
Q ss_pred EEECCCCChHHHHHHHHHcCCCCCCCCCcee
Q psy43 14 ILIGDSTVGKSSLLKYFTDGKFAEISDPTVG 44 (64)
Q Consensus 14 ~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~ 44 (64)
+++|++|+|||||++.+.+ .|.|+-|
T Consensus 34 aLLGENGAGKSTLm~iL~G-----~~~P~~G 59 (501)
T COG3845 34 ALLGENGAGKSTLMKILFG-----LYQPDSG 59 (501)
T ss_pred EEeccCCCCHHHHHHHHhC-----cccCCcc
Confidence 6899999999999999886 3456655
No 429
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.66 E-value=9.8e-05 Score=42.47 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=23.1
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
...++++|+.++||||+++.+++..+
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~~~ 51 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGRDF 51 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCCCc
Confidence 45899999999999999999998653
No 430
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.66 E-value=5.5e-05 Score=43.08 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.9
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 35 IHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6889999999999999988874
No 431
>KOG1423|consensus
Probab=97.65 E-value=7.5e-05 Score=44.72 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=27.0
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCC
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAE 37 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~ 37 (64)
..+.+.++++|.++||||+|.+...+.....
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~ 99 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSA 99 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCcccc
Confidence 4678999999999999999999999876543
No 432
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.65 E-value=6.5e-05 Score=42.13 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999998753
No 433
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.65 E-value=6.4e-05 Score=42.15 Aligned_cols=23 Identities=39% Similarity=0.421 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998653
No 434
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.65 E-value=8.7e-05 Score=42.96 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=23.3
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAE 37 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~ 37 (64)
=+.+++|++|+|||||++.++...++.
T Consensus 58 e~W~I~G~NGsGKTTLL~ll~~~~~ps 84 (257)
T COG1119 58 EHWAIVGPNGAGKTTLLSLLTGEHPPS 84 (257)
T ss_pred CcEEEECCCCCCHHHHHHHHhcccCCC
Confidence 378999999999999999999876654
No 435
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.65 E-value=7.7e-05 Score=45.24 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999998754
No 436
>PRK13949 shikimate kinase; Provisional
Probab=97.65 E-value=6.3e-05 Score=40.97 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=19.2
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
+|+++|.+|+|||++...++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998774
No 437
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.65 E-value=8.7e-05 Score=44.62 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.8
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 32 ~~~l~GpsGsGKSTLLr~iaGl~ 54 (353)
T TIGR03265 32 FVCLLGPSGCGKTTLLRIIAGLE 54 (353)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57999999999999999999754
No 438
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.65 E-value=8.8e-05 Score=44.80 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 31 ~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999998654
No 439
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.65 E-value=6.3e-05 Score=43.21 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 440
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.65 E-value=9.3e-05 Score=41.92 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 441
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.65 E-value=6.6e-05 Score=41.63 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=20.2
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999875
No 442
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.64 E-value=6.5e-05 Score=43.82 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl~ 57 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGLL 57 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999998643
No 443
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.64 E-value=6.6e-05 Score=42.75 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.0
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999864
No 444
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.64 E-value=5.9e-05 Score=43.89 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 35 ~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 35 WTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 58999999999999999998654
No 445
>PRK02496 adk adenylate kinase; Provisional
Probab=97.64 E-value=7.6e-05 Score=40.75 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.8
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.+++++|++|+|||++...+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 446
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.64 E-value=6.3e-05 Score=42.04 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=19.9
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 447
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.63 E-value=6.7e-05 Score=41.04 Aligned_cols=20 Identities=40% Similarity=0.650 Sum_probs=18.7
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy43 13 LILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~ 32 (64)
++++|++|+||++|..+++.
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~ 24 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQ 24 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999986
No 448
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=6.7e-05 Score=43.36 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988653
No 449
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.63 E-value=7e-05 Score=42.41 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||+..+++-.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
No 450
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=6.2e-05 Score=42.95 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 32 VTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58899999999999999998753
No 451
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.63 E-value=7.1e-05 Score=42.00 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 42 ~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999998653
No 452
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=6.7e-05 Score=44.62 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 35 ~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 35 IRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 58899999999999999998754
No 453
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=6.9e-05 Score=43.43 Aligned_cols=22 Identities=41% Similarity=0.606 Sum_probs=19.9
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 48 ~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 48 IIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999864
No 454
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.63 E-value=6.6e-05 Score=41.28 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=20.2
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
-.++++|++|+||||+++.++..
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999988754
No 455
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.63 E-value=6.1e-05 Score=42.56 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccC
Confidence 57999999999999999998753
No 456
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=7e-05 Score=43.16 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=19.9
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 49 VTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5889999999999999999874
No 457
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.63 E-value=7.2e-05 Score=42.11 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++..
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 458
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=6.4e-05 Score=46.99 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.7
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 29 ~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 29 RYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998743
No 459
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.63 E-value=7.6e-05 Score=41.44 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998643
No 460
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=7.2e-05 Score=43.62 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~ 57 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALL 57 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998653
No 461
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.62 E-value=7.2e-05 Score=40.53 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998754
No 462
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.62 E-value=7.6e-05 Score=41.73 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.7
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68899999999999999998754
No 463
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.62 E-value=6.3e-05 Score=45.21 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 30 ~~~llGpsGsGKSTLLr~IaGl~ 52 (353)
T PRK10851 30 MVALLGPSGSGKTTLLRIIAGLE 52 (353)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999754
No 464
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.62 E-value=6.6e-05 Score=43.54 Aligned_cols=21 Identities=43% Similarity=0.502 Sum_probs=19.5
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-+.++|++|+|||||+..+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999987
No 465
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.62 E-value=7.2e-05 Score=42.95 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999998643
No 466
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.62 E-value=0.0001 Score=44.24 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 26 ~~~l~G~nGsGKSTLl~~iaGl~ 48 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINAISGLT 48 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 467
>PRK08233 hypothetical protein; Provisional
Probab=97.62 E-value=7e-05 Score=40.46 Aligned_cols=23 Identities=22% Similarity=0.184 Sum_probs=19.9
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
+-|++.|.+|+|||||..+++..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 56778899999999999999853
No 468
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.62 E-value=7.7e-05 Score=41.62 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998653
No 469
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=7.1e-05 Score=44.75 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 33 i~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 33 IFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998654
No 470
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=7.6e-05 Score=43.07 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999998653
No 471
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.62 E-value=7.4e-05 Score=43.27 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.7
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||+..+++..
T Consensus 52 ~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 52 VIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 67899999999999999998754
No 472
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.61 E-value=6.5e-05 Score=42.92 Aligned_cols=22 Identities=18% Similarity=0.501 Sum_probs=19.7
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+++.|++|+|||++++.+...
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4889999999999999998754
No 473
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.61 E-value=7.3e-05 Score=43.41 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 29 ~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 29 VTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998653
No 474
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=7.7e-05 Score=42.68 Aligned_cols=22 Identities=45% Similarity=0.551 Sum_probs=20.0
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+.++|++|+|||||++.+++-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 30 ITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 475
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.61 E-value=9.7e-05 Score=44.60 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.1
Q ss_pred eEEEECCCCChHHHHHHHHHcCCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
.++++|++|+|||||++.+++-..
T Consensus 33 ~~~llGpsGsGKSTLLr~iaGl~~ 56 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGFVK 56 (362)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999997543
No 476
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.61 E-value=7.7e-05 Score=43.04 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 47 ~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 47 VTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 57899999999999999998643
No 477
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.61 E-value=6.9e-05 Score=44.03 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
-+.++|++|+|||||++.+++...+
T Consensus 33 i~gllG~NGAGKTTllk~l~gl~~p 57 (293)
T COG1131 33 IFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3789999999999999999976543
No 478
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=7.9e-05 Score=42.46 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 32 LTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 58899999999999999999754
No 479
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.61 E-value=8.1e-05 Score=40.97 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=18.9
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-+.++|.+|+|||||+.++..
T Consensus 8 ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred EEEEECCCCChHHHHHHHHHH
Confidence 689999999999999998874
No 480
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.61 E-value=7.8e-05 Score=40.89 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
=++++|++|+||+++...++...
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998763
No 481
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.61 E-value=8.1e-05 Score=42.62 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++..
T Consensus 33 ~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999998754
No 482
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=7.9e-05 Score=43.47 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.0
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 67 ~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 67 VTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999874
No 483
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.60 E-value=8.6e-05 Score=40.48 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.3
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+|+++|.+|+|||++...++..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 37999999999999999998753
No 484
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=8.1e-05 Score=42.50 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=19.9
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 34 VTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999863
No 485
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.60 E-value=7.3e-05 Score=41.56 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.3
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy43 13 LILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~~ 33 (64)
+++.|++|+||||++..++..
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999987643
No 486
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.60 E-value=7.3e-05 Score=43.05 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++..
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58899999999999999988653
No 487
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.60 E-value=9.4e-05 Score=47.27 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.2
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
=++.++|++|+|||||++.+++..
T Consensus 30 e~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 30 ERVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 368999999999999999998754
No 488
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=8.3e-05 Score=43.11 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=20.2
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 489
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.60 E-value=7.7e-05 Score=42.55 Aligned_cols=24 Identities=21% Similarity=0.560 Sum_probs=21.1
Q ss_pred eeeEEEECCCCChHHHHHHHHHcC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++++|++|+||||+..+++..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998753
No 490
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=8.3e-05 Score=43.10 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 33 KTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999998643
No 491
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=8.5e-05 Score=42.31 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++..
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 32 VNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998753
No 492
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.60 E-value=7.5e-05 Score=46.55 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+.++|++|+|||||++.+++-
T Consensus 28 ~~~iiG~nGsGKSTLl~~l~Gl 49 (520)
T TIGR03269 28 VLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5899999999999999999875
No 493
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.60 E-value=0.00013 Score=40.44 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.6
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||+..+++-.
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 68999999999999999998754
No 494
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.59 E-value=7.8e-05 Score=42.76 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.1
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
-++++|++|+||||+++.+++--
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998643
No 495
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.59 E-value=8.7e-05 Score=42.25 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.1
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+.++|++|+|||||++.+++-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 30 ITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999874
No 496
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.59 E-value=0.0001 Score=47.21 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.9
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
++.++|++|+|||||++.+++..
T Consensus 29 ~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 29 KVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999753
No 497
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.59 E-value=6.8e-05 Score=41.80 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=19.1
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
+++++|..++|||||+++++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~ 21 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLY 21 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 498
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=0.00013 Score=42.65 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=20.8
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~ 56 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999998754
No 499
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=0.00011 Score=44.66 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 47 ~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998654
No 500
>PRK14531 adenylate kinase; Provisional
Probab=97.59 E-value=9.2e-05 Score=40.56 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.9
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.+++++|++|+||||+..+++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998864
Done!