Query psy43
Match_columns 64
No_of_seqs 180 out of 1293
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 22:01:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy43.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/43hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.7 1E-17 3.4E-22 92.9 5.9 57 7-64 10-66 (216)
2 1oix_A RAS-related protein RAB 99.6 2E-14 6.7E-19 77.6 8.4 57 6-63 25-81 (191)
3 2bme_A RAB4A, RAS-related prot 99.6 4E-14 1.4E-18 75.3 8.7 60 3-63 3-62 (186)
4 2efe_B Small GTP-binding prote 99.6 2.1E-14 7.1E-19 76.1 7.4 62 1-63 3-64 (181)
5 2ew1_A RAS-related protein RAB 99.6 3.3E-14 1.1E-18 77.5 8.2 57 6-63 22-78 (201)
6 3tkl_A RAS-related protein RAB 99.6 4.6E-14 1.6E-18 75.6 8.6 60 3-63 9-68 (196)
7 3tw8_B RAS-related protein RAB 99.5 3.6E-14 1.2E-18 74.9 7.8 60 3-63 2-61 (181)
8 2bcg_Y Protein YP2, GTP-bindin 99.5 3.1E-14 1.1E-18 77.1 7.6 57 6-63 4-60 (206)
9 2fu5_C RAS-related protein RAB 99.5 9.2E-15 3.2E-19 77.7 4.8 57 6-63 4-60 (183)
10 2oil_A CATX-8, RAS-related pro 99.5 9.1E-14 3.1E-18 74.6 8.6 58 5-63 20-77 (193)
11 2f9l_A RAB11B, member RAS onco 99.5 5.6E-14 1.9E-18 76.0 7.7 55 8-63 3-57 (199)
12 1z08_A RAS-related protein RAB 99.5 6.8E-14 2.3E-18 73.4 7.4 56 7-63 3-58 (170)
13 1vg8_A RAS-related protein RAB 99.5 6.7E-14 2.3E-18 75.6 7.5 57 6-63 4-60 (207)
14 1wms_A RAB-9, RAB9, RAS-relate 99.5 9E-14 3.1E-18 73.4 7.8 57 6-63 3-59 (177)
15 2hup_A RAS-related protein RAB 99.5 4.8E-14 1.6E-18 76.5 6.8 58 6-64 25-82 (201)
16 2il1_A RAB12; G-protein, GDP, 99.5 5.8E-14 2E-18 75.6 7.0 58 5-63 21-78 (192)
17 1x3s_A RAS-related protein RAB 99.5 1E-13 3.5E-18 74.1 7.8 57 6-63 11-67 (195)
18 1zbd_A Rabphilin-3A; G protein 99.5 2E-13 7E-18 73.6 9.0 57 6-63 4-60 (203)
19 1z0f_A RAB14, member RAS oncog 99.5 1.2E-13 4E-18 72.9 7.8 58 5-63 10-67 (179)
20 2a5j_A RAS-related protein RAB 99.5 9.1E-14 3.1E-18 74.6 7.5 59 5-64 16-74 (191)
21 1z2a_A RAS-related protein RAB 99.5 7.9E-14 2.7E-18 72.9 7.0 55 8-63 3-57 (168)
22 3bc1_A RAS-related protein RAB 99.5 1.4E-13 4.8E-18 73.3 8.1 53 5-58 6-59 (195)
23 2fn4_A P23, RAS-related protei 99.5 1.6E-13 5.6E-18 72.4 8.1 58 4-63 3-60 (181)
24 2gf9_A RAS-related protein RAB 99.5 2.7E-13 9.3E-18 72.6 8.5 57 6-63 18-74 (189)
25 2y8e_A RAB-protein 6, GH09086P 99.5 2.1E-13 7.1E-18 71.9 7.9 56 7-63 11-66 (179)
26 2fg5_A RAB-22B, RAS-related pr 99.5 1.4E-13 4.8E-18 74.0 7.4 58 5-63 18-75 (192)
27 1z06_A RAS-related protein RAB 99.5 1.5E-13 5.3E-18 73.5 7.3 55 8-63 18-72 (189)
28 3c5c_A RAS-like protein 12; GD 99.5 2.2E-13 7.6E-18 73.1 7.9 56 7-64 18-73 (187)
29 3ihw_A Centg3; RAS, centaurin, 99.5 3E-13 1E-17 72.6 8.2 55 7-64 17-71 (184)
30 1ek0_A Protein (GTP-binding pr 99.5 2.9E-13 9.9E-18 70.7 8.0 54 9-63 2-55 (170)
31 2iwr_A Centaurin gamma 1; ANK 99.5 1.4E-13 4.9E-18 72.8 6.8 54 8-64 5-58 (178)
32 1r2q_A RAS-related protein RAB 99.5 2.3E-13 7.9E-18 71.1 7.5 55 8-63 4-58 (170)
33 1z0j_A RAB-22, RAS-related pro 99.5 3.3E-13 1.1E-17 70.6 8.1 56 7-63 3-58 (170)
34 1gwn_A RHO-related GTP-binding 99.5 1.8E-13 6.3E-18 74.6 7.1 57 5-63 23-79 (205)
35 3kkq_A RAS-related protein M-R 99.5 4.1E-13 1.4E-17 71.3 8.2 57 5-63 13-69 (183)
36 2o52_A RAS-related protein RAB 99.5 1.5E-13 5.2E-18 74.4 6.5 56 7-63 22-77 (200)
37 2p5s_A RAS and EF-hand domain 99.5 1.6E-13 5.6E-18 74.1 6.5 58 6-64 24-81 (199)
38 1ky3_A GTP-binding protein YPT 99.5 7.6E-14 2.6E-18 73.7 4.9 57 6-62 4-60 (182)
39 3cpj_B GTP-binding protein YPT 99.5 2.6E-13 8.8E-18 74.5 7.1 56 7-63 10-65 (223)
40 2g6b_A RAS-related protein RAB 99.5 6E-13 2.1E-17 70.3 8.2 59 4-63 4-63 (180)
41 1g16_A RAS-related protein SEC 99.5 1.6E-13 5.3E-18 71.9 5.9 54 9-63 2-55 (170)
42 2hxs_A RAB-26, RAS-related pro 99.5 5.5E-14 1.9E-18 74.2 4.1 57 7-63 3-59 (178)
43 2f7s_A C25KG, RAS-related prot 99.5 2.9E-13 9.8E-18 73.8 7.0 52 6-58 21-72 (217)
44 3cbq_A GTP-binding protein REM 99.5 7.4E-14 2.5E-18 75.6 4.5 57 6-63 19-75 (195)
45 3q3j_B RHO-related GTP-binding 99.5 3.9E-13 1.3E-17 73.6 7.1 57 6-64 23-79 (214)
46 3clv_A RAB5 protein, putative; 99.4 4.6E-13 1.6E-17 71.5 7.0 52 7-59 4-55 (208)
47 3t5g_A GTP-binding protein RHE 99.4 7.1E-13 2.4E-17 70.3 7.7 54 8-63 4-57 (181)
48 3cph_A RAS-related protein SEC 99.4 5.2E-13 1.8E-17 72.3 7.1 56 7-63 17-72 (213)
49 2g3y_A GTP-binding protein GEM 99.4 4.8E-13 1.6E-17 73.7 6.7 56 6-63 33-90 (211)
50 3reg_A RHO-like small GTPase; 99.4 1.3E-12 4.4E-17 70.1 8.3 55 7-63 20-74 (194)
51 1m7b_A RND3/RHOE small GTP-bin 99.4 8.5E-13 2.9E-17 70.5 7.2 55 7-63 4-58 (184)
52 3dz8_A RAS-related protein RAB 99.4 4.8E-14 1.6E-18 75.7 2.1 57 6-63 19-75 (191)
53 4gzl_A RAS-related C3 botulinu 99.4 7.7E-13 2.6E-17 71.9 6.8 56 6-63 26-81 (204)
54 2q3h_A RAS homolog gene family 99.4 9.3E-13 3.2E-17 71.0 6.8 56 6-63 16-71 (201)
55 2atv_A RERG, RAS-like estrogen 99.4 2.1E-12 7.3E-17 69.5 7.7 54 8-63 26-79 (196)
56 1kao_A RAP2A; GTP-binding prot 99.4 3E-12 1E-16 66.5 7.9 53 9-63 2-54 (167)
57 1mh1_A RAC1; GTP-binding, GTPa 99.4 3E-12 1E-16 67.8 7.9 54 8-63 3-56 (186)
58 2j0v_A RAC-like GTP-binding pr 99.4 1.7E-12 5.8E-17 70.5 7.0 54 8-63 7-60 (212)
59 2nzj_A GTP-binding protein REM 99.4 1.4E-12 5E-17 68.5 6.6 54 8-63 2-55 (175)
60 1c1y_A RAS-related protein RAP 99.4 2.6E-12 8.9E-17 67.0 7.5 53 9-63 2-54 (167)
61 2atx_A Small GTP binding prote 99.4 1.3E-12 4.3E-17 70.1 6.3 54 8-63 16-69 (194)
62 2a9k_A RAS-related protein RAL 99.4 3.3E-12 1.1E-16 67.6 7.8 55 7-63 15-69 (187)
63 2cjw_A GTP-binding protein GEM 99.4 1.3E-12 4.3E-17 70.6 6.1 54 8-63 4-59 (192)
64 2j1l_A RHO-related GTP-binding 99.4 2.1E-12 7.3E-17 70.5 7.1 54 8-63 32-85 (214)
65 4dsu_A GTPase KRAS, isoform 2B 99.4 4.7E-12 1.6E-16 67.2 8.1 54 8-63 2-55 (189)
66 2bov_A RAla, RAS-related prote 99.4 4.5E-12 1.5E-16 68.2 8.1 55 7-63 11-65 (206)
67 3l0i_B RAS-related protein RAB 99.4 4.9E-14 1.7E-18 76.1 0.3 59 4-63 27-85 (199)
68 3gj0_A GTP-binding nuclear pro 99.4 3.4E-13 1.2E-17 73.8 3.6 58 5-63 10-67 (221)
69 1u8z_A RAS-related protein RAL 99.4 6.6E-12 2.3E-16 65.3 8.1 53 9-63 3-55 (168)
70 3q85_A GTP-binding protein REM 99.4 3.1E-12 1.1E-16 67.0 6.6 53 10-63 2-54 (169)
71 3oes_A GTPase rhebl1; small GT 99.3 2.4E-12 8.2E-17 69.6 5.9 54 8-63 22-75 (201)
72 2erx_A GTP-binding protein DI- 99.3 1.1E-11 3.6E-16 64.8 8.1 53 9-63 2-54 (172)
73 3con_A GTPase NRAS; structural 99.3 1.1E-11 3.6E-16 66.2 8.1 54 8-63 19-72 (190)
74 2gf0_A GTP-binding protein DI- 99.3 8.4E-12 2.9E-16 66.8 7.7 54 8-63 6-59 (199)
75 2gco_A H9, RHO-related GTP-bin 99.3 5.3E-12 1.8E-16 68.3 6.8 55 7-63 22-76 (201)
76 2yc2_C IFT27, small RAB-relate 99.3 6.2E-13 2.1E-17 71.6 2.9 55 8-63 18-76 (208)
77 2ce2_X GTPase HRAS; signaling 99.3 1.3E-11 4.5E-16 64.0 7.6 52 10-63 3-54 (166)
78 2zej_A Dardarin, leucine-rich 99.3 1.7E-12 5.7E-17 69.5 4.2 45 10-54 2-48 (184)
79 2fv8_A H6, RHO-related GTP-bin 99.3 8.9E-12 3E-16 67.6 6.8 54 8-63 23-76 (207)
80 3t1o_A Gliding protein MGLA; G 99.3 1.1E-12 3.7E-17 70.0 2.9 57 5-63 9-77 (198)
81 4bas_A ADP-ribosylation factor 99.3 1.5E-11 5.1E-16 65.9 7.3 54 5-61 12-66 (199)
82 2lkc_A Translation initiation 99.3 7.7E-12 2.6E-16 65.9 5.8 55 7-62 5-59 (178)
83 3bwd_D RAC-like GTP-binding pr 99.3 9.9E-13 3.4E-17 69.6 1.5 52 8-61 6-57 (182)
84 2wji_A Ferrous iron transport 99.3 2.3E-11 7.9E-16 64.0 6.7 51 10-61 3-53 (165)
85 2wjg_A FEOB, ferrous iron tran 99.3 2.4E-11 8.1E-16 64.7 6.7 54 8-62 5-58 (188)
86 1zd9_A ADP-ribosylation factor 99.3 5.1E-11 1.8E-15 63.7 8.0 51 8-61 20-70 (188)
87 4djt_A GTP-binding nuclear pro 99.2 6.2E-12 2.1E-16 68.5 4.0 58 6-63 7-64 (218)
88 2h57_A ADP-ribosylation factor 99.2 2.3E-11 7.9E-16 65.0 5.5 53 7-62 18-71 (190)
89 3th5_A RAS-related C3 botulinu 98.8 1.3E-12 4.3E-17 70.7 0.0 54 8-63 28-81 (204)
90 1ksh_A ARF-like protein 2; sma 99.2 9.3E-11 3.2E-15 62.3 7.3 51 8-62 16-66 (186)
91 3c5h_A Glucocorticoid receptor 99.2 1.4E-12 4.7E-17 73.4 -0.4 44 5-48 14-70 (255)
92 2wkq_A NPH1-1, RAS-related C3 99.2 1.1E-10 3.9E-15 66.6 7.6 53 9-63 154-206 (332)
93 2h17_A ADP-ribosylation factor 99.2 2.5E-11 8.5E-16 64.6 4.0 52 7-62 18-69 (181)
94 1upt_A ARL1, ADP-ribosylation 99.2 2.2E-10 7.6E-15 59.9 7.4 50 8-61 5-54 (171)
95 3q72_A GTP-binding protein RAD 99.2 8.3E-11 2.8E-15 61.3 5.6 51 10-63 2-52 (166)
96 1zj6_A ADP-ribosylation factor 99.2 5.5E-11 1.9E-15 63.4 4.8 50 8-61 14-63 (187)
97 3lxx_A GTPase IMAP family memb 99.1 1.9E-10 6.6E-15 63.8 6.7 55 7-62 26-82 (239)
98 1fzq_A ADP-ribosylation factor 99.1 8.5E-11 2.9E-15 62.7 4.9 50 8-61 14-63 (181)
99 1r8s_A ADP-ribosylation factor 99.1 1.2E-10 4E-15 60.7 5.3 47 11-61 1-47 (164)
100 2fh5_B SR-beta, signal recogni 99.1 1.1E-10 3.6E-15 63.4 4.9 45 7-54 4-48 (214)
101 1moz_A ARL1, ADP-ribosylation 99.1 4.8E-11 1.6E-15 63.2 3.3 50 8-61 16-65 (183)
102 1m2o_B GTP-binding protein SAR 99.1 3.2E-10 1.1E-14 60.9 6.5 50 8-61 21-70 (190)
103 3t5d_A Septin-7; GTP-binding p 99.1 6.6E-11 2.2E-15 67.0 3.8 57 6-63 4-68 (274)
104 2b6h_A ADP-ribosylation factor 99.1 1.5E-10 5.3E-15 62.2 4.9 50 8-61 27-76 (192)
105 2gj8_A MNME, tRNA modification 99.1 5.4E-10 1.8E-14 59.3 6.7 52 9-61 3-55 (172)
106 2dyk_A GTP-binding protein; GT 99.1 6.1E-10 2.1E-14 57.7 6.3 51 11-62 2-53 (161)
107 1f6b_A SAR1; gtpases, N-termin 99.1 2.3E-10 8E-15 61.8 4.8 50 8-61 23-72 (198)
108 3a1s_A Iron(II) transport prot 99.1 5.9E-10 2E-14 62.9 6.5 54 8-62 3-56 (258)
109 3k53_A Ferrous iron transport 99.1 4.1E-10 1.4E-14 63.6 5.8 53 9-62 2-54 (271)
110 2x77_A ADP-ribosylation factor 99.1 1.8E-10 6.1E-15 61.5 4.0 50 8-61 20-69 (189)
111 2qu8_A Putative nucleolar GTP- 99.0 8.5E-10 2.9E-14 60.7 6.2 29 8-36 27-55 (228)
112 2xtp_A GTPase IMAP family memb 99.0 1.9E-09 6.4E-14 60.3 6.7 54 8-62 20-75 (260)
113 1svi_A GTP-binding protein YSX 99.0 1.3E-09 4.4E-14 58.2 5.8 47 8-54 21-67 (195)
114 3i8s_A Ferrous iron transport 99.0 7.6E-10 2.6E-14 62.9 5.1 52 10-62 3-54 (274)
115 3iby_A Ferrous iron transport 99.0 1.4E-09 4.7E-14 61.4 5.4 51 11-62 2-52 (256)
116 2cxx_A Probable GTP-binding pr 98.9 8.8E-10 3E-14 58.5 4.1 34 11-44 2-35 (190)
117 3llu_A RAS-related GTP-binding 98.9 3.7E-10 1.3E-14 60.8 2.1 41 6-49 16-56 (196)
118 3dpu_A RAB family protein; roc 98.9 1.2E-09 4.2E-14 66.6 4.5 44 7-50 38-81 (535)
119 1nrj_B SR-beta, signal recogni 98.9 1.9E-09 6.5E-14 58.6 4.6 38 7-44 9-49 (218)
120 3pqc_A Probable GTP-binding pr 98.9 6.3E-09 2.2E-13 55.2 6.5 37 7-44 20-56 (195)
121 3lxw_A GTPase IMAP family memb 98.9 6.8E-09 2.3E-13 58.1 6.5 55 7-62 18-74 (247)
122 3r7w_A Gtpase1, GTP-binding pr 98.9 1.1E-08 3.9E-13 58.8 7.4 41 9-49 2-45 (307)
123 2qag_A Septin-2, protein NEDD5 98.9 4.9E-09 1.7E-13 61.6 5.7 55 8-63 35-98 (361)
124 3lvq_E ARF-GAP with SH3 domain 98.8 1.3E-08 4.4E-13 61.5 7.0 50 8-61 320-369 (497)
125 2hjg_A GTP-binding protein ENG 98.8 7.9E-09 2.7E-13 61.8 6.0 54 8-62 173-227 (436)
126 3def_A T7I23.11 protein; chlor 98.8 2.3E-08 7.9E-13 56.3 7.4 53 8-62 34-88 (262)
127 2ged_A SR-beta, signal recogni 98.8 2.9E-09 1E-13 56.8 3.4 30 8-37 46-75 (193)
128 3o47_A ADP-ribosylation factor 98.8 4.5E-09 1.5E-13 61.1 4.2 49 9-61 164-212 (329)
129 1mky_A Probable GTP-binding pr 98.8 8.8E-09 3E-13 61.7 5.5 51 11-62 2-53 (439)
130 2hf9_A Probable hydrogenase ni 98.8 3.2E-09 1.1E-13 58.0 3.1 40 9-48 37-76 (226)
131 1mky_A Probable GTP-binding pr 98.8 1.7E-08 5.8E-13 60.5 6.3 52 9-61 179-231 (439)
132 1pui_A ENGB, probable GTP-bind 98.8 4.8E-09 1.6E-13 56.6 3.4 44 9-52 25-68 (210)
133 2qnr_A Septin-2, protein NEDD5 98.8 6E-09 2.1E-13 60.0 3.4 31 7-37 15-46 (301)
134 3b1v_A Ferrous iron uptake tra 98.7 2.1E-08 7.3E-13 57.1 4.7 28 9-36 2-29 (272)
135 3r7w_B Gtpase2, GTP-binding pr 98.7 7.5E-09 2.6E-13 60.6 2.7 37 12-48 1-40 (331)
136 4dhe_A Probable GTP-binding pr 98.7 6.6E-09 2.3E-13 56.5 2.2 28 8-35 27-54 (223)
137 2qag_C Septin-7; cell cycle, c 98.7 3.2E-08 1.1E-12 59.4 5.1 28 8-35 29-56 (418)
138 1h65_A Chloroplast outer envel 98.7 1.2E-07 4.2E-12 53.4 7.1 28 8-35 37-64 (270)
139 2qtf_A Protein HFLX, GTP-bindi 98.7 4.2E-08 1.4E-12 57.9 5.0 52 10-62 178-230 (364)
140 1wf3_A GTP-binding protein; GT 98.6 2.1E-07 7.2E-12 53.6 7.7 29 8-36 5-33 (301)
141 3gee_A MNME, tRNA modification 98.6 3.6E-08 1.2E-12 59.9 4.5 52 10-62 233-285 (476)
142 3iev_A GTP-binding protein ERA 98.6 3.5E-07 1.2E-11 52.7 7.6 33 4-36 4-36 (308)
143 4dcu_A GTP-binding protein ENG 98.6 7.5E-08 2.6E-12 57.9 4.8 54 8-62 193-247 (456)
144 3geh_A MNME, tRNA modification 98.6 1.6E-08 5.5E-13 61.3 1.8 52 10-62 224-276 (462)
145 1xzp_A Probable tRNA modificat 98.5 3E-08 1E-12 60.3 1.8 51 10-62 243-295 (482)
146 2e87_A Hypothetical protein PH 98.4 4.7E-07 1.6E-11 53.0 5.6 28 8-35 165-192 (357)
147 2aka_B Dynamin-1; fusion prote 98.4 2.4E-07 8.2E-12 52.4 4.2 29 8-36 24-52 (299)
148 2hjg_A GTP-binding protein ENG 98.4 6.3E-08 2.2E-12 58.0 1.7 26 11-36 4-29 (436)
149 3j2k_7 ERF3, eukaryotic polype 98.4 1.4E-06 4.6E-11 52.5 7.3 26 7-32 14-39 (439)
150 3sop_A Neuronal-specific septi 98.4 1.7E-07 5.9E-12 53.3 3.1 25 9-33 1-25 (270)
151 3qq5_A Small GTP-binding prote 98.4 5.5E-08 1.9E-12 58.4 0.9 49 6-54 30-79 (423)
152 2ohf_A Protein OLA1, GTP-bindi 98.4 3.3E-07 1.1E-11 54.8 4.0 46 9-54 21-66 (396)
153 1ega_A Protein (GTP-binding pr 98.4 1.7E-06 5.9E-11 49.7 6.8 28 8-35 6-33 (301)
154 4dcu_A GTP-binding protein ENG 98.3 1.1E-07 3.7E-12 57.2 1.2 28 9-36 22-49 (456)
155 4a9a_A Ribosome-interacting GT 98.3 1.7E-06 5.7E-11 51.5 6.0 52 10-62 72-123 (376)
156 3t34_A Dynamin-related protein 98.3 7.9E-07 2.7E-11 52.0 4.2 29 9-37 33-61 (360)
157 1jal_A YCHF protein; nucleotid 98.3 2.5E-07 8.5E-12 54.8 1.9 25 11-35 3-27 (363)
158 1wb1_A Translation elongation 98.3 2.4E-06 8.1E-11 52.0 6.0 27 8-34 17-43 (482)
159 1ye8_A Protein THEP1, hypothet 98.3 7.5E-07 2.6E-11 47.9 3.1 23 11-33 1-23 (178)
160 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 1.4E-06 4.6E-11 52.1 4.4 27 9-35 19-45 (392)
161 1zp6_A Hypothetical protein AT 98.2 9.6E-07 3.3E-11 47.1 3.4 23 11-33 10-32 (191)
162 1s0u_A EIF-2-gamma, translatio 98.2 3.1E-06 1.1E-10 50.3 5.6 46 7-52 5-55 (408)
163 1lnz_A SPO0B-associated GTP-bi 98.2 9.4E-07 3.2E-11 51.8 3.3 25 11-35 159-183 (342)
164 1kgd_A CASK, peripheral plasma 98.2 1E-06 3.5E-11 47.0 2.9 22 12-33 7-28 (180)
165 1lvg_A Guanylate kinase, GMP k 98.2 1.1E-06 3.6E-11 47.8 2.9 22 11-32 5-26 (198)
166 3izy_P Translation initiation 98.2 3.3E-08 1.1E-12 60.9 -3.4 39 9-47 3-41 (537)
167 1jwy_B Dynamin A GTPase domain 98.2 1.4E-06 4.9E-11 49.6 3.3 28 8-35 22-49 (315)
168 3sjy_A Translation initiation 98.1 3.5E-06 1.2E-10 50.0 4.7 30 5-34 3-32 (403)
169 1kk1_A EIF2gamma; initiation o 98.1 7.6E-06 2.6E-10 48.6 5.8 43 7-49 7-54 (410)
170 1znw_A Guanylate kinase, GMP k 98.1 1.7E-06 5.9E-11 47.0 2.9 22 12-33 22-43 (207)
171 3a00_A Guanylate kinase, GMP k 98.1 1.8E-06 6E-11 46.3 2.8 20 13-32 4-23 (186)
172 1s96_A Guanylate kinase, GMP k 98.1 1.9E-06 6.6E-11 47.7 2.9 22 12-33 18-39 (219)
173 2x2e_A Dynamin-1; nitration, h 98.1 1.1E-06 3.9E-11 51.3 2.0 28 9-36 30-57 (353)
174 3tr0_A Guanylate kinase, GMP k 98.1 2.2E-06 7.5E-11 46.1 2.9 22 12-33 9-30 (205)
175 3cnl_A YLQF, putative uncharac 98.1 2.7E-06 9.2E-11 48.2 3.3 25 11-35 100-124 (262)
176 2wsm_A Hydrogenase expression/ 98.1 1.2E-06 4E-11 47.6 1.7 24 10-33 30-53 (221)
177 3p26_A Elongation factor 1 alp 98.1 3.8E-06 1.3E-10 51.0 4.0 25 9-33 32-56 (483)
178 3mca_A HBS1, elongation factor 98.1 2.7E-06 9.3E-11 52.9 3.5 24 8-31 175-198 (592)
179 1z6g_A Guanylate kinase; struc 98.1 2.3E-06 7.9E-11 47.1 2.9 22 12-33 25-46 (218)
180 1wxq_A GTP-binding protein; st 98.1 4.9E-06 1.7E-10 49.6 4.1 24 11-34 1-24 (397)
181 1ex7_A Guanylate kinase; subst 98.0 3.3E-06 1.1E-10 45.9 3.1 21 13-33 4-24 (186)
182 3ney_A 55 kDa erythrocyte memb 98.0 3.5E-06 1.2E-10 46.2 3.1 24 10-33 19-42 (197)
183 1puj_A YLQF, conserved hypothe 98.0 4.6E-06 1.6E-10 47.7 3.6 27 8-34 118-144 (282)
184 4gp7_A Metallophosphoesterase; 98.0 2.5E-06 8.7E-11 45.3 2.4 19 12-30 11-29 (171)
185 2qag_B Septin-6, protein NEDD5 98.0 2.8E-06 9.6E-11 51.3 2.7 26 10-35 42-67 (427)
186 2qpt_A EH domain-containing pr 98.0 8E-06 2.7E-10 50.5 4.6 29 8-36 63-91 (550)
187 3tif_A Uncharacterized ABC tra 98.0 3.5E-06 1.2E-10 47.0 2.7 22 12-33 33-54 (235)
188 3tau_A Guanylate kinase, GMP k 98.0 4E-06 1.4E-10 45.7 2.9 22 12-33 10-31 (208)
189 1htw_A HI0065; nucleotide-bind 98.0 4.2E-06 1.4E-10 44.3 2.9 23 12-34 35-57 (158)
190 1dar_A EF-G, elongation factor 98.0 1.5E-05 5E-10 50.4 5.3 29 4-32 6-34 (691)
191 3izq_1 HBS1P, elongation facto 98.0 1.1E-05 3.9E-10 50.3 4.6 26 8-33 165-190 (611)
192 2onk_A Molybdate/tungstate ABC 98.0 5.9E-06 2E-10 46.3 3.1 23 12-34 26-48 (240)
193 1knq_A Gluconate kinase; ALFA/ 98.0 8.4E-06 2.9E-10 43.0 3.5 30 1-32 1-30 (175)
194 3c8u_A Fructokinase; YP_612366 98.0 4.8E-06 1.7E-10 45.3 2.6 24 9-32 21-44 (208)
195 1b0u_A Histidine permease; ABC 97.9 5.3E-06 1.8E-10 47.0 2.8 22 12-33 34-55 (262)
196 2pcj_A ABC transporter, lipopr 97.9 4.7E-06 1.6E-10 46.2 2.5 22 12-33 32-53 (224)
197 2j69_A Bacterial dynamin-like 97.9 1E-05 3.6E-10 51.1 4.0 28 9-36 68-95 (695)
198 2ehv_A Hypothetical protein PH 97.9 7.5E-06 2.6E-10 45.0 3.1 20 12-31 32-51 (251)
199 3gfo_A Cobalt import ATP-bindi 97.9 6.3E-06 2.2E-10 47.1 2.8 22 12-33 36-57 (275)
200 2ff7_A Alpha-hemolysin translo 97.9 7E-06 2.4E-10 46.1 2.9 22 12-33 37-58 (247)
201 2cbz_A Multidrug resistance-as 97.9 7.2E-06 2.5E-10 45.8 2.9 22 12-33 33-54 (237)
202 1mv5_A LMRA, multidrug resista 97.9 7.6E-06 2.6E-10 45.8 3.0 22 12-33 30-51 (243)
203 1g6h_A High-affinity branched- 97.9 6.5E-06 2.2E-10 46.4 2.7 23 12-34 35-57 (257)
204 1lw7_A Transcriptional regulat 97.9 8E-06 2.7E-10 47.9 3.2 24 10-33 170-193 (365)
205 2www_A Methylmalonic aciduria 97.9 8.6E-06 2.9E-10 47.7 3.3 23 10-32 74-96 (349)
206 2dby_A GTP-binding protein; GD 97.9 6.4E-06 2.2E-10 48.8 2.7 24 11-34 2-25 (368)
207 2zu0_C Probable ATP-dependent 97.9 8.4E-06 2.9E-10 46.3 3.1 22 12-33 48-69 (267)
208 4g1u_C Hemin import ATP-bindin 97.9 6.9E-06 2.4E-10 46.7 2.8 23 12-34 39-61 (266)
209 2d2e_A SUFC protein; ABC-ATPas 97.9 8.5E-06 2.9E-10 45.8 3.1 22 12-33 31-52 (250)
210 1ji0_A ABC transporter; ATP bi 97.9 7.2E-06 2.5E-10 45.8 2.7 22 12-33 34-55 (240)
211 1sgw_A Putative ABC transporte 97.9 7.6E-06 2.6E-10 45.2 2.8 22 12-33 37-58 (214)
212 2olj_A Amino acid ABC transpor 97.9 7.3E-06 2.5E-10 46.5 2.8 22 12-33 52-73 (263)
213 2pze_A Cystic fibrosis transme 97.9 8.8E-06 3E-10 45.2 3.0 23 12-34 36-58 (229)
214 2ihy_A ABC transporter, ATP-bi 97.9 8.7E-06 3E-10 46.6 3.0 23 12-34 49-71 (279)
215 2bdt_A BH3686; alpha-beta prot 97.9 9.6E-06 3.3E-10 43.2 3.0 21 12-32 4-24 (189)
216 2qor_A Guanylate kinase; phosp 97.9 9.7E-06 3.3E-10 43.9 3.0 22 11-32 13-34 (204)
217 2i3b_A HCR-ntpase, human cance 97.9 8.8E-06 3E-10 44.2 2.8 21 12-32 3-23 (189)
218 3fvq_A Fe(3+) IONS import ATP- 97.9 7.7E-06 2.6E-10 48.4 2.8 23 12-34 32-54 (359)
219 2j41_A Guanylate kinase; GMP, 97.9 9E-06 3.1E-10 43.6 2.8 24 11-34 7-30 (207)
220 2qi9_C Vitamin B12 import ATP- 97.9 8.5E-06 2.9E-10 45.9 2.8 22 12-33 28-49 (249)
221 2ixe_A Antigen peptide transpo 97.9 9.4E-06 3.2E-10 46.2 2.9 22 12-33 47-68 (271)
222 2bbw_A Adenylate kinase 4, AK4 97.9 1.2E-05 4E-10 44.7 3.3 21 11-31 28-48 (246)
223 1vpl_A ABC transporter, ATP-bi 97.9 8.8E-06 3E-10 46.0 2.8 22 12-33 43-64 (256)
224 1kag_A SKI, shikimate kinase I 97.9 1E-05 3.6E-10 42.4 2.9 21 12-32 6-26 (173)
225 2ghi_A Transport protein; mult 97.9 9.9E-06 3.4E-10 45.8 2.9 22 12-33 48-69 (260)
226 2rcn_A Probable GTPase ENGC; Y 97.9 1.2E-05 4.2E-10 47.6 3.3 24 12-35 217-240 (358)
227 3rlf_A Maltose/maltodextrin im 97.9 1.1E-05 3.7E-10 48.1 3.1 23 12-34 31-53 (381)
228 1z47_A CYSA, putative ABC-tran 97.9 1.1E-05 3.7E-10 47.7 3.1 23 12-34 43-65 (355)
229 4a74_A DNA repair and recombin 97.9 9.9E-06 3.4E-10 44.0 2.7 21 12-32 27-47 (231)
230 2it1_A 362AA long hypothetical 97.8 1.1E-05 3.9E-10 47.7 3.1 23 12-34 31-53 (362)
231 2yyz_A Sugar ABC transporter, 97.8 1.1E-05 3.8E-10 47.7 3.1 23 12-34 31-53 (359)
232 4eun_A Thermoresistant glucoki 97.8 1.2E-05 4E-10 43.5 2.9 22 11-32 30-51 (200)
233 1g29_1 MALK, maltose transport 97.8 1.2E-05 3.9E-10 47.8 3.1 23 12-34 31-53 (372)
234 1tq4_A IIGP1, interferon-induc 97.8 2.4E-05 8.1E-10 47.1 4.4 25 10-34 69-93 (413)
235 2nq2_C Hypothetical ABC transp 97.8 1E-05 3.5E-10 45.6 2.7 23 12-34 33-55 (253)
236 2yz2_A Putative ABC transporte 97.8 1E-05 3.5E-10 45.8 2.7 22 12-33 35-56 (266)
237 1zun_B Sulfate adenylate trans 97.8 1.7E-05 5.8E-10 47.5 3.8 27 8-34 22-48 (434)
238 1v43_A Sugar-binding transport 97.8 1.2E-05 4.3E-10 47.7 3.1 23 12-34 39-61 (372)
239 1udx_A The GTP-binding protein 97.8 1.9E-05 6.5E-10 47.5 3.9 24 11-34 158-181 (416)
240 3lnc_A Guanylate kinase, GMP k 97.8 6.9E-06 2.4E-10 45.2 1.9 20 12-31 29-48 (231)
241 2pjz_A Hypothetical protein ST 97.8 1.3E-05 4.3E-10 45.6 3.0 23 12-34 32-54 (263)
242 3asz_A Uridine kinase; cytidin 97.8 1.2E-05 4.1E-10 43.5 2.8 23 10-32 6-28 (211)
243 2eyu_A Twitching motility prot 97.8 1.3E-05 4.4E-10 45.4 2.9 21 12-32 27-47 (261)
244 3b85_A Phosphate starvation-in 97.8 8.3E-06 2.8E-10 44.9 2.1 22 12-33 24-45 (208)
245 3d31_A Sulfate/molybdate ABC t 97.8 1E-05 3.5E-10 47.7 2.5 23 12-34 28-50 (348)
246 1zo1_I IF2, translation initia 97.8 8.7E-07 3E-11 54.3 -2.1 29 9-37 3-31 (501)
247 2v9p_A Replication protein E1; 97.8 1.4E-05 4.8E-10 46.4 3.0 21 12-32 128-148 (305)
248 2yv5_A YJEQ protein; hydrolase 97.8 1.4E-05 4.9E-10 46.0 3.0 23 11-34 166-188 (302)
249 3uie_A Adenylyl-sulfate kinase 97.8 1.4E-05 4.9E-10 43.1 2.9 23 10-32 25-47 (200)
250 3kb2_A SPBC2 prophage-derived 97.8 1.6E-05 5.5E-10 41.4 3.0 21 12-32 3-23 (173)
251 1u0l_A Probable GTPase ENGC; p 97.8 1.7E-05 5.7E-10 45.6 3.2 23 12-34 171-193 (301)
252 3ec2_A DNA replication protein 97.8 1.3E-05 4.3E-10 42.5 2.4 22 11-32 39-60 (180)
253 2xex_A Elongation factor G; GT 97.8 1.9E-05 6.5E-10 49.9 3.5 32 1-32 1-32 (693)
254 3nh6_A ATP-binding cassette SU 97.8 1.2E-05 4.2E-10 46.6 2.4 22 12-33 82-103 (306)
255 2dy1_A Elongation factor G; tr 97.8 1.3E-05 4.5E-10 50.4 2.6 25 8-32 7-31 (665)
256 3fb4_A Adenylate kinase; psych 97.8 2.2E-05 7.6E-10 42.6 3.2 22 11-32 1-22 (216)
257 3tr5_A RF-3, peptide chain rel 97.8 5.3E-06 1.8E-10 51.1 0.7 24 8-31 11-34 (528)
258 3tui_C Methionine import ATP-b 97.8 1.9E-05 6.6E-10 46.9 3.1 23 12-34 56-78 (366)
259 3gd7_A Fusion complex of cysti 97.8 1.6E-05 5.5E-10 47.5 2.8 22 12-33 49-70 (390)
260 2bbs_A Cystic fibrosis transme 97.8 1.6E-05 5.4E-10 45.8 2.6 22 12-33 66-87 (290)
261 3vaa_A Shikimate kinase, SK; s 97.8 2.4E-05 8.3E-10 42.2 3.2 22 11-32 26-47 (199)
262 1oxx_K GLCV, glucose, ABC tran 97.7 1E-05 3.5E-10 47.7 1.8 23 12-34 33-55 (353)
263 3dl0_A Adenylate kinase; phosp 97.7 2.4E-05 8.4E-10 42.4 3.2 22 11-32 1-22 (216)
264 1cke_A CK, MSSA, protein (cyti 97.7 2.3E-05 7.9E-10 42.7 3.1 22 11-32 6-27 (227)
265 2c78_A Elongation factor TU-A; 97.7 2.6E-05 8.9E-10 46.3 3.5 26 7-32 8-33 (405)
266 3t61_A Gluconokinase; PSI-biol 97.7 2E-05 7E-10 42.4 2.8 22 11-32 19-40 (202)
267 1jny_A EF-1-alpha, elongation 97.7 2.4E-05 8.4E-10 46.9 3.4 26 8-33 4-29 (435)
268 1f60_A Elongation factor EEF1A 97.7 3E-05 1E-09 46.9 3.7 26 8-33 5-30 (458)
269 3aez_A Pantothenate kinase; tr 97.7 2E-05 6.9E-10 45.7 2.9 25 8-32 88-112 (312)
270 2jaq_A Deoxyguanosine kinase; 97.7 2.5E-05 8.6E-10 41.7 3.1 21 12-32 2-22 (205)
271 1qhx_A CPT, protein (chloramph 97.7 2.4E-05 8.2E-10 41.2 2.9 21 12-32 5-25 (178)
272 2if2_A Dephospho-COA kinase; a 97.7 2.2E-05 7.6E-10 42.2 2.8 22 11-32 2-23 (204)
273 1rj9_A FTSY, signal recognitio 97.7 2.3E-05 8E-10 45.3 2.9 23 10-32 102-124 (304)
274 3lw7_A Adenylate kinase relate 97.7 3.2E-05 1.1E-09 40.1 3.1 20 11-30 2-21 (179)
275 1ly1_A Polynucleotide kinase; 97.7 3.1E-05 1.1E-09 40.6 3.1 22 11-32 3-24 (181)
276 1d2e_A Elongation factor TU (E 97.7 3.6E-05 1.2E-09 45.7 3.5 24 9-32 2-25 (397)
277 1t9h_A YLOQ, probable GTPase E 97.7 7E-06 2.4E-10 47.7 0.5 24 11-34 174-197 (307)
278 2qm8_A GTPase/ATPase; G protei 97.7 3E-05 1E-09 45.3 3.1 22 10-31 55-76 (337)
279 2w0m_A SSO2452; RECA, SSPF, un 97.7 3.2E-05 1.1E-09 41.9 3.0 21 12-32 25-45 (235)
280 2f1r_A Molybdopterin-guanine d 97.7 1.4E-05 4.7E-10 42.9 1.5 21 12-32 4-24 (171)
281 1jbk_A CLPB protein; beta barr 97.7 3.2E-05 1.1E-09 40.4 2.9 22 11-32 44-65 (195)
282 1jjv_A Dephospho-COA kinase; P 97.7 4.2E-05 1.4E-09 41.2 3.4 22 11-32 3-24 (206)
283 1np6_A Molybdopterin-guanine d 97.7 3.6E-05 1.2E-09 41.3 3.0 22 11-32 7-28 (174)
284 1ixz_A ATP-dependent metallopr 97.7 3.2E-05 1.1E-09 42.9 2.9 21 13-33 52-72 (254)
285 1nks_A Adenylate kinase; therm 97.7 3.8E-05 1.3E-09 40.6 3.1 21 12-32 3-23 (194)
286 3b9q_A Chloroplast SRP recepto 97.7 3.1E-05 1.1E-09 44.7 2.9 23 10-32 100-122 (302)
287 1uf9_A TT1252 protein; P-loop, 97.7 4.4E-05 1.5E-09 40.8 3.2 25 9-33 7-31 (203)
288 2jeo_A Uridine-cytidine kinase 97.7 3.4E-05 1.1E-09 42.9 2.9 23 10-32 25-47 (245)
289 1kht_A Adenylate kinase; phosp 97.6 4.6E-05 1.6E-09 40.3 3.2 22 11-32 4-25 (192)
290 3e70_C DPA, signal recognition 97.6 3.5E-05 1.2E-09 45.0 2.9 23 10-32 129-151 (328)
291 1r5b_A Eukaryotic peptide chai 97.6 7.3E-05 2.5E-09 45.3 4.4 25 8-32 41-65 (467)
292 1f5n_A Interferon-induced guan 97.6 6.9E-05 2.3E-09 46.9 4.3 27 8-34 36-62 (592)
293 3trf_A Shikimate kinase, SK; a 97.6 4.9E-05 1.7E-09 40.2 3.2 22 11-32 6-27 (185)
294 2x8a_A Nuclear valosin-contain 97.6 3.7E-05 1.3E-09 43.7 2.8 20 13-32 47-66 (274)
295 2qt1_A Nicotinamide riboside k 97.6 6.1E-05 2.1E-09 40.7 3.6 24 10-33 21-44 (207)
296 1odf_A YGR205W, hypothetical 3 97.6 6.6E-05 2.3E-09 43.1 3.9 25 8-32 29-53 (290)
297 2cdn_A Adenylate kinase; phosp 97.6 6.3E-05 2.1E-09 40.4 3.6 25 8-32 18-42 (201)
298 1g7s_A Translation initiation 97.6 3.9E-05 1.3E-09 47.9 3.1 28 9-36 4-31 (594)
299 3tqc_A Pantothenate kinase; bi 97.6 6E-05 2.1E-09 44.0 3.7 25 8-32 90-114 (321)
300 3p32_A Probable GTPase RV1496/ 97.6 5.6E-05 1.9E-09 44.3 3.5 24 9-32 78-101 (355)
301 2gza_A Type IV secretion syste 97.6 5.1E-05 1.7E-09 44.7 3.4 23 11-33 176-198 (361)
302 3cm0_A Adenylate kinase; ATP-b 97.6 6E-05 2.1E-09 39.9 3.4 23 10-32 4-26 (186)
303 3jvv_A Twitching mobility prot 97.6 3.9E-05 1.3E-09 45.3 2.8 21 12-32 125-145 (356)
304 1y63_A LMAJ004144AAA protein; 97.6 6.8E-05 2.3E-09 40.0 3.5 24 10-33 10-33 (184)
305 3tlx_A Adenylate kinase 2; str 97.6 6.9E-05 2.4E-09 41.7 3.6 24 9-32 28-51 (243)
306 2wwf_A Thymidilate kinase, put 97.6 7.2E-05 2.4E-09 40.3 3.6 23 10-32 10-32 (212)
307 3kta_A Chromosome segregation 97.6 4.7E-05 1.6E-09 40.3 2.8 20 12-31 28-47 (182)
308 4e22_A Cytidylate kinase; P-lo 97.6 5.9E-05 2E-09 42.2 3.3 21 11-31 28-48 (252)
309 2npi_A Protein CLP1; CLP1-PCF1 97.6 3.6E-05 1.2E-09 46.8 2.5 22 12-33 140-161 (460)
310 3sr0_A Adenylate kinase; phosp 97.6 6E-05 2.1E-09 41.4 3.2 22 11-32 1-22 (206)
311 1ukz_A Uridylate kinase; trans 97.6 9.9E-05 3.4E-09 39.6 4.0 24 9-32 14-37 (203)
312 1in4_A RUVB, holliday junction 97.6 4.8E-05 1.6E-09 44.1 2.9 21 12-32 53-73 (334)
313 1e4v_A Adenylate kinase; trans 97.6 5.3E-05 1.8E-09 41.2 2.9 22 11-32 1-22 (214)
314 1yqt_A RNAse L inhibitor; ATP- 97.6 5.7E-05 1.9E-09 46.6 3.3 23 12-34 49-71 (538)
315 3iij_A Coilin-interacting nucl 97.6 7.7E-05 2.6E-09 39.4 3.5 23 10-32 11-33 (180)
316 2rhm_A Putative kinase; P-loop 97.6 6.7E-05 2.3E-09 39.8 3.3 22 11-32 6-27 (193)
317 1iy2_A ATP-dependent metallopr 97.6 5.1E-05 1.8E-09 42.8 2.9 21 13-33 76-96 (278)
318 3szr_A Interferon-induced GTP- 97.6 3.1E-05 1.1E-09 48.3 2.1 25 12-36 47-71 (608)
319 2kjq_A DNAA-related protein; s 97.6 2.9E-05 9.9E-10 40.6 1.7 21 12-32 38-58 (149)
320 1n0w_A DNA repair protein RAD5 97.6 6.1E-05 2.1E-09 41.2 3.1 22 12-33 26-47 (243)
321 1via_A Shikimate kinase; struc 97.6 6.3E-05 2.2E-09 39.6 3.0 21 12-32 6-26 (175)
322 1n0u_A EF-2, elongation factor 97.6 0.00011 3.7E-09 47.4 4.5 27 7-33 16-42 (842)
323 1gvn_B Zeta; postsegregational 97.5 7.4E-05 2.5E-09 42.7 3.4 24 9-32 32-55 (287)
324 1sq5_A Pantothenate kinase; P- 97.5 7.4E-05 2.5E-09 43.0 3.4 23 10-32 80-102 (308)
325 1zcb_A G alpha I/13; GTP-bindi 97.5 7.1E-05 2.4E-09 44.2 3.4 23 8-30 31-53 (362)
326 2rdo_7 EF-G, elongation factor 97.5 9.4E-05 3.2E-09 46.9 4.1 28 5-32 5-32 (704)
327 2og2_A Putative signal recogni 97.5 5.5E-05 1.9E-09 44.7 2.9 23 10-32 157-179 (359)
328 2cvh_A DNA repair and recombin 97.5 6.6E-05 2.3E-09 40.5 3.0 21 12-32 22-42 (220)
329 2ewv_A Twitching motility prot 97.5 5.3E-05 1.8E-09 44.8 2.8 21 12-32 138-158 (372)
330 1cr0_A DNA primase/helicase; R 97.5 5.4E-05 1.8E-09 43.0 2.7 22 12-33 37-58 (296)
331 2plr_A DTMP kinase, probable t 97.5 8.7E-05 3E-09 39.8 3.4 22 11-32 5-26 (213)
332 2obl_A ESCN; ATPase, hydrolase 97.5 5.6E-05 1.9E-09 44.4 2.8 23 12-34 73-95 (347)
333 1nn5_A Similar to deoxythymidy 97.5 9.5E-05 3.2E-09 39.8 3.5 23 10-32 9-31 (215)
334 3bos_A Putative DNA replicatio 97.5 7.3E-05 2.5E-09 40.6 3.0 23 10-32 52-74 (242)
335 2pt5_A Shikimate kinase, SK; a 97.5 8.3E-05 2.9E-09 38.7 3.1 22 11-32 1-22 (168)
336 2p65_A Hypothetical protein PF 97.5 4.8E-05 1.6E-09 39.8 2.1 22 11-32 44-65 (187)
337 2h5e_A Peptide chain release f 97.5 7.2E-05 2.5E-09 46.1 3.2 25 8-32 11-35 (529)
338 2dpy_A FLII, flagellum-specifi 97.5 6.1E-05 2.1E-09 45.5 2.8 23 12-34 159-181 (438)
339 1zd8_A GTP:AMP phosphotransfer 97.5 7.5E-05 2.6E-09 40.9 3.0 23 10-32 7-29 (227)
340 2yhs_A FTSY, cell division pro 97.5 6.6E-05 2.3E-09 46.3 2.9 23 10-32 293-315 (503)
341 2ze6_A Isopentenyl transferase 97.5 8E-05 2.7E-09 41.8 3.1 21 12-32 3-23 (253)
342 2vp4_A Deoxynucleoside kinase; 97.5 4.2E-05 1.4E-09 42.2 1.9 24 10-33 20-43 (230)
343 1rz3_A Hypothetical protein rb 97.5 9.4E-05 3.2E-09 40.0 3.2 23 10-32 22-44 (201)
344 1aky_A Adenylate kinase; ATP:A 97.5 9.5E-05 3.3E-09 40.3 3.3 23 10-32 4-26 (220)
345 1ak2_A Adenylate kinase isoenz 97.5 0.00011 3.6E-09 40.6 3.4 24 9-32 15-38 (233)
346 1tev_A UMP-CMP kinase; ploop, 97.5 0.00011 3.8E-09 38.8 3.4 23 10-32 3-25 (196)
347 2v54_A DTMP kinase, thymidylat 97.5 9.2E-05 3.2E-09 39.6 3.1 23 11-33 5-27 (204)
348 2pt7_A CAG-ALFA; ATPase, prote 97.5 6.3E-05 2.2E-09 43.8 2.6 23 12-34 173-195 (330)
349 3euj_A Chromosome partition pr 97.5 7.2E-05 2.5E-09 45.8 2.9 20 12-31 31-50 (483)
350 2xb4_A Adenylate kinase; ATP-b 97.5 0.0001 3.4E-09 40.5 3.2 22 11-32 1-22 (223)
351 1lv7_A FTSH; alpha/beta domain 97.5 8.2E-05 2.8E-09 41.4 2.9 22 11-32 46-67 (257)
352 1bif_A 6-phosphofructo-2-kinas 97.5 0.0001 3.5E-09 44.6 3.4 25 9-33 38-62 (469)
353 2z0h_A DTMP kinase, thymidylat 97.5 9.7E-05 3.3E-09 39.3 3.1 21 12-32 2-22 (197)
354 3j16_B RLI1P; ribosome recycli 97.5 8.2E-05 2.8E-09 46.6 3.1 23 12-34 105-127 (608)
355 2xtz_A Guanine nucleotide-bind 97.5 0.00016 5.4E-09 42.7 4.2 26 6-31 5-30 (354)
356 1zak_A Adenylate kinase; ATP:A 97.5 7.7E-05 2.6E-09 40.7 2.7 22 11-32 6-27 (222)
357 3b60_A Lipid A export ATP-bind 97.5 6.9E-05 2.4E-09 46.4 2.7 22 12-33 371-392 (582)
358 3b5x_A Lipid A export ATP-bind 97.5 0.00013 4.4E-09 45.2 3.9 23 12-34 371-393 (582)
359 3ozx_A RNAse L inhibitor; ATP 97.5 7.3E-05 2.5E-09 46.2 2.8 23 12-34 27-49 (538)
360 1njg_A DNA polymerase III subu 97.5 9.9E-05 3.4E-09 39.7 3.0 21 12-32 47-67 (250)
361 3foz_A TRNA delta(2)-isopenten 97.5 0.00014 4.7E-09 42.6 3.7 22 11-32 11-32 (316)
362 1p9r_A General secretion pathw 97.4 8.3E-05 2.8E-09 44.7 2.8 21 12-32 169-189 (418)
363 2chg_A Replication factor C sm 97.4 0.00011 3.7E-09 39.2 3.0 21 12-32 40-60 (226)
364 3ec1_A YQEH GTPase; atnos1, at 97.4 9.3E-05 3.2E-09 43.7 2.9 23 11-33 163-185 (369)
365 2w58_A DNAI, primosome compone 97.4 0.00012 4E-09 39.3 3.0 22 11-32 55-76 (202)
366 1gtv_A TMK, thymidylate kinase 97.4 3.1E-05 1.1E-09 41.8 0.7 21 12-32 2-22 (214)
367 2yvu_A Probable adenylyl-sulfa 97.4 0.0002 6.8E-09 38.0 3.9 24 9-32 12-35 (186)
368 1xjc_A MOBB protein homolog; s 97.4 0.00014 4.8E-09 39.0 3.1 22 11-32 5-26 (169)
369 2pbr_A DTMP kinase, thymidylat 97.4 0.00015 5.1E-09 38.4 3.2 21 12-32 2-22 (195)
370 3nwj_A ATSK2; P loop, shikimat 97.4 0.00011 3.8E-09 41.4 2.8 22 11-32 49-70 (250)
371 2p5t_B PEZT; postsegregational 97.4 0.00013 4.4E-09 40.8 3.0 25 8-32 30-54 (253)
372 1nlf_A Regulatory protein REPA 97.4 0.00011 3.8E-09 41.5 2.7 21 12-32 32-52 (279)
373 2pez_A Bifunctional 3'-phospho 97.4 0.00013 4.6E-09 38.5 2.9 23 10-32 5-27 (179)
374 3ohm_A Guanine nucleotide-bind 97.4 0.00017 5.7E-09 42.3 3.5 24 7-30 4-27 (327)
375 3bk7_A ABC transporter ATP-bin 97.4 0.00012 3.9E-09 45.9 3.0 23 12-34 119-141 (607)
376 2bwj_A Adenylate kinase 5; pho 97.4 0.00014 4.8E-09 38.7 3.0 22 11-32 13-34 (199)
377 2elf_A Protein translation elo 97.4 7.8E-05 2.7E-09 44.1 2.1 20 12-31 23-42 (370)
378 1nij_A Hypothetical protein YJ 97.4 7.1E-05 2.4E-09 43.3 1.9 23 12-34 6-28 (318)
379 2c95_A Adenylate kinase 1; tra 97.4 0.00014 4.8E-09 38.6 3.0 22 11-32 10-31 (196)
380 3r20_A Cytidylate kinase; stru 97.4 0.00016 5.4E-09 40.5 3.3 22 10-31 9-30 (233)
381 4fid_A G protein alpha subunit 97.4 0.00013 4.4E-09 43.0 3.0 23 8-30 3-25 (340)
382 1q3t_A Cytidylate kinase; nucl 97.4 0.00018 6.2E-09 39.7 3.3 28 5-32 11-38 (236)
383 3be4_A Adenylate kinase; malar 97.4 0.00015 5E-09 39.6 3.0 22 11-32 6-27 (217)
384 1e6c_A Shikimate kinase; phosp 97.4 0.00017 5.7E-09 37.7 3.1 21 12-32 4-24 (173)
385 1yqt_A RNAse L inhibitor; ATP- 97.4 0.00015 5.3E-09 44.7 3.3 23 12-34 314-336 (538)
386 2dr3_A UPF0273 protein PH0284; 97.4 0.00014 4.7E-09 39.8 2.8 21 12-32 25-45 (247)
387 1vht_A Dephospho-COA kinase; s 97.3 0.00022 7.6E-09 38.7 3.5 23 10-32 4-26 (218)
388 2yl4_A ATP-binding cassette SU 97.3 7.3E-05 2.5E-09 46.4 1.8 22 12-33 372-393 (595)
389 3b9p_A CG5977-PA, isoform A; A 97.3 0.00014 4.8E-09 41.1 2.8 23 10-32 54-76 (297)
390 3h2y_A GTPase family protein; 97.3 0.0001 3.6E-09 43.5 2.3 23 11-33 161-183 (368)
391 2qby_A CDC6 homolog 1, cell di 97.3 0.00013 4.3E-09 42.1 2.6 22 11-32 46-67 (386)
392 1qf9_A UMP/CMP kinase, protein 97.3 0.00023 7.9E-09 37.5 3.5 22 11-32 7-28 (194)
393 3ozx_A RNAse L inhibitor; ATP 97.3 0.00013 4.4E-09 45.1 2.8 23 12-34 296-318 (538)
394 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.00016 5.4E-09 40.0 2.9 22 11-32 40-61 (262)
395 2oap_1 GSPE-2, type II secreti 97.3 0.00015 5.1E-09 44.6 3.0 22 12-33 262-283 (511)
396 3h4m_A Proteasome-activating n 97.3 0.00016 5.5E-09 40.6 3.0 23 11-33 52-74 (285)
397 3bk7_A ABC transporter ATP-bin 97.3 0.00018 6.1E-09 45.1 3.3 23 12-34 384-406 (607)
398 2p67_A LAO/AO transport system 97.3 0.00018 6E-09 42.0 3.1 23 9-31 55-77 (341)
399 1cip_A Protein (guanine nucleo 97.3 0.00021 7.2E-09 42.1 3.4 24 8-31 30-53 (353)
400 1f2t_A RAD50 ABC-ATPase; DNA d 97.3 0.00021 7.3E-09 37.2 3.1 19 13-31 26-44 (149)
401 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 0.00019 6.5E-09 40.3 3.1 22 11-32 5-26 (260)
402 1uj2_A Uridine-cytidine kinase 97.3 0.00024 8.1E-09 39.6 3.4 24 9-32 21-44 (252)
403 1l8q_A Chromosomal replication 97.3 0.00016 5.6E-09 41.4 2.8 22 11-32 38-59 (324)
404 4f4c_A Multidrug resistance pr 97.3 0.00012 4.2E-09 49.1 2.5 21 12-32 1107-1127(1321)
405 2iyv_A Shikimate kinase, SK; t 97.3 0.00019 6.5E-09 37.9 2.9 21 12-32 4-24 (184)
406 3qf4_B Uncharacterized ABC tra 97.3 9.9E-05 3.4E-09 45.9 1.9 22 12-33 383-404 (598)
407 4eaq_A DTMP kinase, thymidylat 97.3 0.00018 6.3E-09 39.8 2.9 23 10-32 26-48 (229)
408 2f6r_A COA synthase, bifunctio 97.3 0.00028 9.5E-09 40.2 3.7 24 8-31 73-96 (281)
409 1m7g_A Adenylylsulfate kinase; 97.3 0.00019 6.4E-09 39.0 2.9 23 10-32 25-47 (211)
410 2qen_A Walker-type ATPase; unk 97.3 0.0002 6.8E-09 40.8 3.1 22 12-33 33-54 (350)
411 4f4c_A Multidrug resistance pr 97.3 0.00032 1.1E-08 47.1 4.3 21 12-32 446-466 (1321)
412 2vli_A Antibiotic resistance p 97.3 0.00014 4.6E-09 38.3 2.2 23 10-32 5-27 (183)
413 3cb4_D GTP-binding protein LEP 97.3 0.00028 9.4E-09 44.2 3.8 24 9-32 3-26 (599)
414 1fnn_A CDC6P, cell division co 97.3 0.00019 6.5E-09 41.5 2.9 22 12-33 46-67 (389)
415 3qf7_A RAD50; ABC-ATPase, ATPa 97.3 0.0002 7E-09 42.2 3.1 19 13-31 26-44 (365)
416 1sxj_E Activator 1 40 kDa subu 97.3 0.00014 5E-09 41.8 2.3 20 13-32 39-58 (354)
417 4a82_A Cystic fibrosis transme 97.3 8.2E-05 2.8E-09 46.1 1.4 21 12-32 369-389 (578)
418 1tf7_A KAIC; homohexamer, hexa 97.3 0.00017 5.8E-09 44.2 2.7 19 12-30 41-59 (525)
419 3zvr_A Dynamin-1; hydrolase, D 97.3 0.00023 7.8E-09 45.8 3.3 27 9-35 50-76 (772)
420 3j16_B RLI1P; ribosome recycli 97.3 0.00021 7.2E-09 44.8 3.1 22 13-34 381-402 (608)
421 3d3q_A TRNA delta(2)-isopenten 97.3 0.00031 1.1E-08 41.4 3.6 22 11-32 8-29 (340)
422 3cf0_A Transitional endoplasmi 97.3 0.0002 6.9E-09 40.9 2.8 23 11-33 50-72 (301)
423 1yrb_A ATP(GTP)binding protein 97.2 0.00034 1.2E-08 38.7 3.6 24 8-31 12-35 (262)
424 3qf4_A ABC transporter, ATP-bi 97.2 0.00012 3.9E-09 45.6 1.8 22 12-33 371-392 (587)
425 2iw3_A Elongation factor 3A; a 97.2 0.00025 8.6E-09 46.7 3.4 24 12-35 463-486 (986)
426 1ofh_A ATP-dependent HSL prote 97.2 0.00025 8.6E-09 40.0 3.1 22 11-32 51-72 (310)
427 1svm_A Large T antigen; AAA+ f 97.2 0.00022 7.4E-09 42.5 2.9 22 11-32 170-191 (377)
428 2fna_A Conserved hypothetical 97.2 0.00021 7.1E-09 40.8 2.7 21 12-32 32-52 (357)
429 1ltq_A Polynucleotide kinase; 97.2 0.00026 9E-09 40.1 3.1 22 11-32 3-24 (301)
430 1pzn_A RAD51, DNA repair and r 97.2 0.00022 7.6E-09 41.8 2.7 22 12-33 133-154 (349)
431 1d2n_A N-ethylmaleimide-sensit 97.2 0.00027 9.4E-09 39.6 3.0 24 9-32 63-86 (272)
432 1sxj_C Activator 1 40 kDa subu 97.2 0.00024 8.1E-09 41.1 2.8 20 13-32 49-68 (340)
433 2px0_A Flagellar biosynthesis 97.2 0.00023 8E-09 40.9 2.7 23 10-32 105-127 (296)
434 3a8t_A Adenylate isopentenyltr 97.2 0.0003 1E-08 41.5 3.2 22 12-33 42-63 (339)
435 4fcw_A Chaperone protein CLPB; 97.2 0.00026 8.9E-09 40.1 2.9 22 11-32 48-69 (311)
436 3syl_A Protein CBBX; photosynt 97.2 0.00034 1.2E-08 39.6 3.3 22 10-31 67-88 (309)
437 2qmh_A HPR kinase/phosphorylas 97.2 0.00029 9.9E-09 39.0 2.9 24 11-34 35-58 (205)
438 3n70_A Transport activator; si 97.2 0.00035 1.2E-08 35.9 3.0 25 10-34 24-48 (145)
439 3t15_A Ribulose bisphosphate c 97.2 0.00041 1.4E-08 39.6 3.4 23 10-32 36-58 (293)
440 1vma_A Cell division protein F 97.2 0.00033 1.1E-08 40.6 3.1 23 10-32 104-126 (306)
441 3umf_A Adenylate kinase; rossm 97.2 0.00057 2E-08 37.9 3.9 23 10-32 28-51 (217)
442 3lda_A DNA repair protein RAD5 97.2 0.00027 9.1E-09 42.4 2.7 20 12-31 180-199 (400)
443 2v1u_A Cell division control p 97.2 0.00025 8.7E-09 40.9 2.6 23 10-32 44-66 (387)
444 3exa_A TRNA delta(2)-isopenten 97.2 0.00033 1.1E-08 41.1 3.0 22 12-33 5-26 (322)
445 1azs_C GS-alpha; complex (lyas 97.2 0.00038 1.3E-08 41.8 3.4 24 8-31 38-61 (402)
446 3pfi_A Holliday junction ATP-d 97.1 0.00033 1.1E-08 40.2 2.9 23 11-33 56-78 (338)
447 1sxj_D Activator 1 41 kDa subu 97.1 0.00034 1.1E-08 40.1 2.9 20 13-32 61-80 (353)
448 3zvl_A Bifunctional polynucleo 97.1 0.00033 1.1E-08 41.9 2.8 23 10-32 258-280 (416)
449 3uk6_A RUVB-like 2; hexameric 97.1 0.00032 1.1E-08 40.6 2.7 22 11-32 71-92 (368)
450 3cr8_A Sulfate adenylyltranfer 97.1 0.00021 7.2E-09 44.4 2.0 23 10-32 369-391 (552)
451 1zuh_A Shikimate kinase; alpha 97.1 0.00047 1.6E-08 36.0 3.1 22 11-32 8-29 (168)
452 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.00035 1.2E-08 40.4 2.8 23 11-33 46-68 (322)
453 3m6a_A ATP-dependent protease 97.1 0.00034 1.2E-08 43.1 2.8 21 12-32 110-130 (543)
454 3ux8_A Excinuclease ABC, A sub 97.1 0.00024 8.3E-09 44.6 2.2 18 12-29 350-367 (670)
455 3crm_A TRNA delta(2)-isopenten 97.1 0.00042 1.4E-08 40.6 3.0 22 11-32 6-27 (323)
456 2iw3_A Elongation factor 3A; a 97.1 0.00023 7.9E-09 46.8 2.0 22 12-33 701-722 (986)
457 2ywe_A GTP-binding protein LEP 97.1 0.00044 1.5E-08 43.4 3.2 25 8-32 4-28 (600)
458 3eie_A Vacuolar protein sortin 97.1 0.00038 1.3E-08 40.0 2.8 23 10-32 51-73 (322)
459 3qks_A DNA double-strand break 97.1 0.00052 1.8E-08 37.4 3.1 20 12-31 25-44 (203)
460 2qby_B CDC6 homolog 3, cell di 97.1 0.0004 1.4E-08 40.2 2.8 22 11-32 46-67 (384)
461 1um8_A ATP-dependent CLP prote 97.0 0.00048 1.6E-08 40.3 3.1 23 10-32 72-94 (376)
462 2qgz_A Helicase loader, putati 97.0 0.00047 1.6E-08 39.7 3.0 23 10-32 152-174 (308)
463 3avx_A Elongation factor TS, e 97.0 0.00056 1.9E-08 46.1 3.6 26 7-32 293-318 (1289)
464 2z4s_A Chromosomal replication 97.0 0.00044 1.5E-08 41.6 2.8 22 11-32 131-152 (440)
465 2r62_A Cell division protease 97.0 0.00016 5.3E-09 40.3 0.8 21 12-32 46-66 (268)
466 3pxg_A Negative regulator of g 97.0 0.00047 1.6E-08 41.8 2.9 22 11-32 202-223 (468)
467 2j37_W Signal recognition part 97.0 0.00069 2.4E-08 41.7 3.6 23 9-31 100-122 (504)
468 1qhl_A Protein (cell division 97.0 0.00011 3.8E-09 41.0 0.1 20 13-32 30-49 (227)
469 2grj_A Dephospho-COA kinase; T 97.0 0.00089 3E-08 36.3 3.7 26 8-33 10-35 (192)
470 3ake_A Cytidylate kinase; CMP 97.0 0.00056 1.9E-08 36.6 2.9 21 12-32 4-24 (208)
471 2r44_A Uncharacterized protein 97.0 0.0004 1.4E-08 39.8 2.4 21 12-32 48-68 (331)
472 3d8b_A Fidgetin-like protein 1 97.0 0.00056 1.9E-08 40.0 3.0 24 10-33 117-140 (357)
473 2bjv_A PSP operon transcriptio 97.0 0.00061 2.1E-08 38.0 3.0 24 11-34 30-53 (265)
474 2qp9_X Vacuolar protein sortin 97.0 0.00052 1.8E-08 40.2 2.8 22 11-32 85-106 (355)
475 3hws_A ATP-dependent CLP prote 97.0 0.0006 2.1E-08 39.7 3.1 24 10-33 51-74 (363)
476 1tf7_A KAIC; homohexamer, hexa 97.0 0.00046 1.6E-08 42.3 2.6 22 12-33 283-304 (525)
477 3ux8_A Excinuclease ABC, A sub 97.0 0.00044 1.5E-08 43.4 2.5 16 12-27 46-61 (670)
478 1w1w_A Structural maintenance 97.0 0.00061 2.1E-08 40.7 3.0 20 12-31 28-47 (430)
479 2zts_A Putative uncharacterize 97.0 0.0007 2.4E-08 37.0 3.1 20 12-31 32-51 (251)
480 3tqf_A HPR(Ser) kinase; transf 96.9 0.0006 2.1E-08 37.1 2.6 23 11-33 17-39 (181)
481 4aby_A DNA repair protein RECN 96.9 0.00016 5.4E-09 42.7 0.4 19 12-30 62-80 (415)
482 4b4t_K 26S protease regulatory 96.9 0.00069 2.3E-08 41.0 3.0 23 10-32 206-228 (428)
483 2r8r_A Sensor protein; KDPD, P 96.9 0.00093 3.2E-08 37.5 3.4 22 10-31 6-27 (228)
484 2dhr_A FTSH; AAA+ protein, hex 96.9 0.00061 2.1E-08 41.9 2.8 21 12-32 66-86 (499)
485 2o5v_A DNA replication and rep 96.9 0.00074 2.5E-08 40.0 3.1 20 12-31 28-47 (359)
486 3vfd_A Spastin; ATPase, microt 96.9 0.00073 2.5E-08 39.8 3.0 24 10-33 148-171 (389)
487 3g5u_A MCG1178, multidrug resi 96.9 0.0005 1.7E-08 46.1 2.4 21 12-32 418-438 (1284)
488 3pvs_A Replication-associated 96.9 0.0007 2.4E-08 41.0 2.9 22 12-33 52-73 (447)
489 3k1j_A LON protease, ATP-depen 96.9 0.00071 2.4E-08 42.1 2.9 23 12-34 62-84 (604)
490 1hqc_A RUVB; extended AAA-ATPa 96.9 0.00037 1.3E-08 39.6 1.6 22 11-32 39-60 (324)
491 1jr3_A DNA polymerase III subu 96.9 0.00088 3E-08 38.7 3.1 21 12-32 40-60 (373)
492 2ce7_A Cell division protein F 96.9 0.00077 2.6E-08 41.2 2.9 21 12-32 51-71 (476)
493 3eph_A TRNA isopentenyltransfe 96.9 0.00071 2.4E-08 40.8 2.7 21 12-32 4-24 (409)
494 1ko7_A HPR kinase/phosphatase; 96.9 0.00073 2.5E-08 39.5 2.7 23 11-33 145-167 (314)
495 3qkt_A DNA double-strand break 96.9 0.00089 3.1E-08 38.9 3.1 18 13-30 26-43 (339)
496 1e69_A Chromosome segregation 96.9 0.00046 1.6E-08 39.8 1.8 20 12-31 26-45 (322)
497 4b4t_M 26S protease regulatory 96.8 0.00082 2.8E-08 40.8 2.9 23 10-32 215-237 (434)
498 4b4t_L 26S protease subunit RP 96.8 0.00082 2.8E-08 40.8 2.9 23 10-32 215-237 (437)
499 3gmt_A Adenylate kinase; ssgci 96.8 0.0011 3.7E-08 37.2 3.2 25 8-32 6-30 (230)
500 3hr8_A Protein RECA; alpha and 96.8 0.00077 2.7E-08 39.9 2.7 21 12-32 63-83 (356)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.72 E-value=1e-17 Score=92.86 Aligned_cols=57 Identities=26% Similarity=0.528 Sum_probs=41.3
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
+.+.|||+++|+++||||||++||+.+.|...+.||+|.+++.+.+.+ ++..++++|
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~-~~~~v~l~i 66 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTIRLQL 66 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEEC-SSCEEEEEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEe-cceEEEEEE
Confidence 456799999999999999999999999999999999999999999999 888888874
No 2
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.58 E-value=2e-14 Score=77.62 Aligned_cols=57 Identities=44% Similarity=0.719 Sum_probs=50.7
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+.+..+|++++|++|||||||++++++..+...+.||++.++....+.+ +|+.+.++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~ 81 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQ 81 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEE-TTEEEEEE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEE-CCEEEEEE
Confidence 4467899999999999999999999999998889999999998899999 88877653
No 3
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.56 E-value=4e-14 Score=75.33 Aligned_cols=60 Identities=30% Similarity=0.664 Sum_probs=51.7
Q ss_pred CCCCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 3 ~~~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
|+...+..+||+++|++++|||||++++..+.+...+.++++.++....+.+ ++..+.++
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 62 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQ 62 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-TTEEEEEE
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEE
Confidence 3445678899999999999999999999999998888999998888888888 88766654
No 4
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.56 E-value=2.1e-14 Score=76.07 Aligned_cols=62 Identities=29% Similarity=0.478 Sum_probs=48.9
Q ss_pred CCCCCCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 1 MTVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 1 m~~~~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
|+.+......+||+++|++++|||||++++....+...+.++++.++....+.+ ++..+.++
T Consensus 3 m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 64 (181)
T 2efe_B 3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAV-NDATVKFE 64 (181)
T ss_dssp -------CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEE-TTEEEEEE
T ss_pred ccCCCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEE-CCEEEEEE
Confidence 455566778899999999999999999999999998888899998888888888 77766654
No 5
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=3.3e-14 Score=77.47 Aligned_cols=57 Identities=35% Similarity=0.680 Sum_probs=51.0
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.++..+||+++|+++||||||+++++.+.+...+.+|++.++..+.+.+ ++..+.++
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~ 78 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQ 78 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE-TTEEEEEE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEE
Confidence 4567899999999999999999999999998889999999999899999 88777665
No 6
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.56 E-value=4.6e-14 Score=75.60 Aligned_cols=60 Identities=45% Similarity=0.735 Sum_probs=51.6
Q ss_pred CCCCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 3 ~~~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+++..+..+||+++|++++|||||++++..+.+...+.++++.++....+.+ ++..+.++
T Consensus 9 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 68 (196)
T 3tkl_A 9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQ 68 (196)
T ss_dssp --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE-TTEEEEEE
T ss_pred cCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEE
Confidence 3455677899999999999999999999999998889999999998899999 88776654
No 7
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.55 E-value=3.6e-14 Score=74.95 Aligned_cols=60 Identities=42% Similarity=0.583 Sum_probs=47.7
Q ss_pred CCCCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 3 ~~~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
|+..++..+||+++|++++|||||++++..+.+...+.++++.++....+.+ ++..+.+.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 61 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQ 61 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE-TTEEEEEE
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE-CCEEEEEE
Confidence 3445678899999999999999999999999988888999999998899988 88766654
No 8
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.55 E-value=3.1e-14 Score=77.08 Aligned_cols=57 Identities=42% Similarity=0.655 Sum_probs=50.8
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.++..+||+++|++++|||||++++..+.+...+.++++.++....+.+ ++..+.++
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 60 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQ 60 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE-TTEEEEEE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEE
Confidence 4677899999999999999999999999998888999998888888888 88776665
No 9
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.54 E-value=9.2e-15 Score=77.73 Aligned_cols=57 Identities=39% Similarity=0.663 Sum_probs=35.0
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
..+..+||+++|++++|||||++++..+.+...+.||++.++..+.+.+ ++..+.++
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 60 (183)
T 2fu5_C 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQ 60 (183)
T ss_dssp CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEE-TTEEEEEE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEE-CCEEEEEE
Confidence 4567899999999999999999999999888888899998888888888 88766665
No 10
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.53 E-value=9.1e-14 Score=74.55 Aligned_cols=58 Identities=36% Similarity=0.612 Sum_probs=50.4
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+.++..+||+++|++++|||||+++++...+...+.++++.++..+.+.+ ++..+.++
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 77 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML-GTAAVKAQ 77 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEE-TTEEEEEE
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEE
Confidence 34567899999999999999999999999998888899998888888888 77776664
No 11
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.53 E-value=5.6e-14 Score=75.98 Aligned_cols=55 Identities=45% Similarity=0.731 Sum_probs=46.6
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
++.+|++++|++|||||||++++++..+...+.||++.++....+.+ +|+.+.++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~-~g~~~~~~ 57 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQ 57 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE-TTEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEE
Confidence 56899999999999999999999999988888899998888889999 88877654
No 12
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.52 E-value=6.8e-14 Score=73.35 Aligned_cols=56 Identities=27% Similarity=0.552 Sum_probs=48.9
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.+..+||+++|++++|||||++++..+.+...+.++++.++..+.+.+ ++..+.++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~ 58 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLA 58 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES-SSCEEEEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEE-CCEEEEEE
Confidence 457899999999999999999999999998888899998888888888 77776664
No 13
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.52 E-value=6.7e-14 Score=75.57 Aligned_cols=57 Identities=30% Similarity=0.540 Sum_probs=48.3
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.....+||+++|++++|||||++++....+...+.++++.++....+.+ ++..+.++
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 60 (207)
T 1vg8_A 4 RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV-DDRLVTMQ 60 (207)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEES-SSCEEEEE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEE
Confidence 4567899999999999999999999999998889999999998888888 77666554
No 14
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.52 E-value=9e-14 Score=73.36 Aligned_cols=57 Identities=35% Similarity=0.550 Sum_probs=46.3
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.+...+||+++|++++|||||++++..+.+...+.++++.++....+.+ ++..+.++
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 59 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQ 59 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEE-CCEEEEEE
Confidence 3456899999999999999999999999988888999998888888888 88766654
No 15
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.52 E-value=4.8e-14 Score=76.52 Aligned_cols=58 Identities=33% Similarity=0.701 Sum_probs=41.2
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
..+..+||+++|+++||||||++++..+.+...+.+|++.++..+.+.+ ++..+.++|
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i 82 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI-QGKRVKLQI 82 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEE-TTEEEEEEE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEE
Confidence 4567899999999999999999999999998888999998888888888 887666653
No 16
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.52 E-value=5.8e-14 Score=75.60 Aligned_cols=58 Identities=38% Similarity=0.607 Sum_probs=43.4
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...+..+||+++|++++|||||++++..+.+...+.++++.++..+.+.+ ++..+.++
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~ 78 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL-RGKKIRLQ 78 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEE-TTEEEEEE
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEE-CCeEEEEE
Confidence 34567899999999999999999999999988888899998998889988 88776665
No 17
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=1e-13 Score=74.08 Aligned_cols=57 Identities=37% Similarity=0.505 Sum_probs=49.9
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.....+||+++|+++||||||++++....+...+.++++.++..+.+.+ ++..+.++
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 67 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLA 67 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEE-CCeEEEEE
Confidence 3456799999999999999999999999998889999998888888888 77777665
No 18
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.51 E-value=2e-13 Score=73.64 Aligned_cols=57 Identities=33% Similarity=0.611 Sum_probs=50.2
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
..+..+||+++|+++||||||++++....+...+.++++.++..+.+.+ ++..+.++
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 60 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR-NDKRIKLQ 60 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEE-TTEEEEEE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEE-CCeEEEEE
Confidence 4567899999999999999999999999998888999998888888888 77776665
No 19
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.51 E-value=1.2e-13 Score=72.85 Aligned_cols=58 Identities=38% Similarity=0.598 Sum_probs=50.0
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...+..+||+++|+.++|||||++++....+...+.++++.++..+.+.+ ++..+.++
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 67 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQ 67 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE-TTEEEEEE
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCeEEEEE
Confidence 44567899999999999999999999999998888899988888888888 77766654
No 20
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.51 E-value=9.1e-14 Score=74.61 Aligned_cols=59 Identities=46% Similarity=0.729 Sum_probs=46.5
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
......+||+++|+++||||||++++..+.+...+.++++.++..+.+.+ ++..+.++|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i 74 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQI 74 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE-TTEEEEEEE
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEE
Confidence 34567899999999999999999999999998888899988888888888 887776653
No 21
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.51 E-value=7.9e-14 Score=72.88 Aligned_cols=55 Identities=25% Similarity=0.575 Sum_probs=48.3
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+..+||+++|++|+|||||++++..+.+...+.+|++.++..+.+.+ ++..+.++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 57 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV-NDEDVRLM 57 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE-TTEEEEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEE-CCEEEEEE
Confidence 46899999999999999999999999998888999998888888888 77766654
No 22
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.51 E-value=1.4e-13 Score=73.28 Aligned_cols=53 Identities=42% Similarity=0.647 Sum_probs=45.8
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEE-EEEEEecCCe
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFF-ARLVTMRDGA 58 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~ 58 (64)
++++..+||+++|++++|||||++++..+.+...+.+|++.++. .+.+.+ ++.
T Consensus 6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~ 59 (195)
T 3bc1_A 6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYR-ANG 59 (195)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEEC-TTS
T ss_pred cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEe-cCC
Confidence 35677899999999999999999999999998888999998887 667777 554
No 23
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.51 E-value=1.6e-13 Score=72.40 Aligned_cols=58 Identities=28% Similarity=0.402 Sum_probs=47.6
Q ss_pred CCCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 4 ~~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+......+||+++|++|+|||||++++....+...+.+|++..+. +.+.+ ++..+.++
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~ 60 (181)
T 2fn4_A 3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSV-DGIPARLD 60 (181)
T ss_dssp -CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEE-TTEEEEEE
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEE-CCEEEEEE
Confidence 444566899999999999999999999999998889999986654 67778 77766654
No 24
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.50 E-value=2.7e-13 Score=72.57 Aligned_cols=57 Identities=37% Similarity=0.517 Sum_probs=49.3
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
..+..+||+++|++++|||||+++++.+.+...+.++++.++..+.+.. ++..+.++
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 74 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYR-HDKRIKLQ 74 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEE-TTEEEEEE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEE-CCeEEEEE
Confidence 3456899999999999999999999999998888899998888888888 77766654
No 25
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.50 E-value=2.1e-13 Score=71.87 Aligned_cols=56 Identities=25% Similarity=0.507 Sum_probs=49.0
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+...+||+++|+.++|||||+++++.+.+...+.++++.++....+.+ ++..+.++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 66 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQ 66 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE-TTEEEEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEE
Confidence 346799999999999999999999999998888999998998888888 88766654
No 26
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=1.4e-13 Score=73.99 Aligned_cols=58 Identities=26% Similarity=0.434 Sum_probs=48.3
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+.++..+||+++|++++|||||+++++.+.+...+.++++.++..+.+.+ ++..+.++
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 75 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPC-GNELHKFL 75 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEEC-SSSEEEEE
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEe-CCEEEEEE
Confidence 44577899999999999999999999999988888999998888888888 66666554
No 27
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.49 E-value=1.5e-13 Score=73.53 Aligned_cols=55 Identities=40% Similarity=0.677 Sum_probs=48.5
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...+||+++|++++|||||++++..+.+...+.++++.++..+.+.+ ++..+.++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 72 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-DGERIKIQ 72 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE-TTEEEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEE-CCEEEEEE
Confidence 45799999999999999999999999998888999998888888888 88766665
No 28
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.49 E-value=2.2e-13 Score=73.12 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=46.1
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
....+||+++|+++||||||+++++.+.+...+.+|++.++ ...+.+ ++..+.++|
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i 73 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETV-DHQPVHLRV 73 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEE-CCEEEEEEE
Confidence 45689999999999999999999999999989999998555 566777 777777653
No 29
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.49 E-value=3e-13 Score=72.61 Aligned_cols=55 Identities=20% Similarity=0.466 Sum_probs=46.8
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
....+||+++|++|||||||+++++.+.|...+.||.+ .+.+.+.+ ++..+.++|
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~~~~l~i 71 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVV-DGQSYLLLI 71 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEE-TTEEEEEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEE-CCEEEEEEE
Confidence 45689999999999999999999999999888888854 44688889 888887753
No 30
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.49 E-value=2.9e-13 Score=70.73 Aligned_cols=54 Identities=33% Similarity=0.591 Sum_probs=47.8
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
..+||+++|++++|||||++++..+.+...+.|+++.++..+.+.+ ++..+.++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 55 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI-NEHTVKFE 55 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEE
Confidence 4689999999999999999999999988888899998888888888 77766654
No 31
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.48 E-value=1.4e-13 Score=72.81 Aligned_cols=54 Identities=26% Similarity=0.454 Sum_probs=45.7
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
...+||+++|+++||||||+++++.+.+.. +.||++ +.+.+.+.+ ++..+.++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~-~~~~~~l~i 58 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLV-DGQTHLVLI 58 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEE-TTEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEE-CCEEEEEEE
Confidence 457999999999999999999999999876 788987 455788888 887777653
No 32
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.48 E-value=2.3e-13 Score=71.12 Aligned_cols=55 Identities=38% Similarity=0.654 Sum_probs=48.3
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...+||+++|++++|||||++++..+.+...+.++++.++..+.+.+ ++..+.++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 58 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFE 58 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEE
Confidence 46899999999999999999999999998888899998888888888 77666654
No 33
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.48 E-value=3.3e-13 Score=70.59 Aligned_cols=56 Identities=27% Similarity=0.493 Sum_probs=48.8
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
....+||+++|++++|||||++++....+...+.++.+.++....+.+ ++..+.+.
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 58 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQY-QNELHKFL 58 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEE-CCeEEEEE
Confidence 356799999999999999999999999988888999998888888888 77666654
No 34
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.48 E-value=1.8e-13 Score=74.64 Aligned_cols=57 Identities=26% Similarity=0.401 Sum_probs=45.4
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
......+||+++|+++||||||++++..+.+...+.||++.++ .+.+.+ ++..+.++
T Consensus 23 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~ 79 (205)
T 1gwn_A 23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEI-DTQRIELS 79 (205)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEES-SSSEEEEE
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEE-CCEEEEEE
Confidence 3456689999999999999999999999999888899997655 566777 77666664
No 35
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.48 E-value=4.1e-13 Score=71.29 Aligned_cols=57 Identities=25% Similarity=0.375 Sum_probs=48.0
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+.....+||+++|++++|||||++++....+...+.++++..+ ...+.+ ++..+.++
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~ 69 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEI-DNQWAILD 69 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEE
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEe-CCcEEEEE
Confidence 3455689999999999999999999999999989999998665 777778 88777764
No 36
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.47 E-value=1.5e-13 Score=74.39 Aligned_cols=56 Identities=36% Similarity=0.619 Sum_probs=38.7
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.+..+||+++|+++||||||++++..+.+...+.++++.++..+.+.+ ++..+.++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~ 77 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKTVKLQ 77 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE-TTEEEEEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE-CCeeeEEE
Confidence 467899999999999999999999999998888899988888888888 88766665
No 37
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.47 E-value=1.6e-13 Score=74.08 Aligned_cols=58 Identities=33% Similarity=0.504 Sum_probs=39.2
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
.....+||+++|+++||||||++++..+.+...+.++++.++..+.+.+ ++..+.++|
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i 81 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIV-DGERTVLQL 81 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEE-TTEEEEEEE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEE-CCEEEEEEE
Confidence 3456799999999999999999999999988888899998888888888 887766653
No 38
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.47 E-value=7.6e-14 Score=73.73 Aligned_cols=57 Identities=28% Similarity=0.512 Sum_probs=42.9
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
.....+||+++|++|+|||||++++..+.+...+.++++.++....+.++++..+.+
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEE
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEE
Confidence 456689999999999999999999999998888889998888888887722444444
No 39
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.46 E-value=2.6e-13 Score=74.52 Aligned_cols=56 Identities=41% Similarity=0.695 Sum_probs=44.2
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.+..+||+++|+++||||||++++....+...+.+|++.++..+.+.+ ++..+.++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 65 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-EGKRIKAQ 65 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE-TTEEEEEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEE
Confidence 467899999999999999999999999998888899998888888888 88766665
No 40
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.46 E-value=6e-13 Score=70.32 Aligned_cols=59 Identities=37% Similarity=0.622 Sum_probs=49.1
Q ss_pred CCCCCeeeeEEEECCCCChHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFA-EISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 4 ~~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.+.++..+||+++|++++|||||++++....+. ..+.+|++.++....+.+ ++..+.++
T Consensus 4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 63 (180)
T 2g6b_A 4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQ 63 (180)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEE
T ss_pred cccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEE
Confidence 345677899999999999999999999998885 467899998888888888 88766654
No 41
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.46 E-value=1.6e-13 Score=71.86 Aligned_cols=54 Identities=37% Similarity=0.538 Sum_probs=41.0
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
..+||+++|++++|||||++++..+.+...+.++++.++....+.+ ++..+.++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 55 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQ 55 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES-SSCEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEE
Confidence 4689999999999999999999999988888899988888888888 77666654
No 42
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.46 E-value=5.5e-14 Score=74.25 Aligned_cols=57 Identities=28% Similarity=0.505 Sum_probs=47.6
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
....+||+++|+++||||||++++..+.+...+.||++.+++.+.+.++++..+.++
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 59 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQ 59 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEE
Confidence 356799999999999999999999999888778899988888888888333555554
No 43
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.46 E-value=2.9e-13 Score=73.76 Aligned_cols=52 Identities=38% Similarity=0.632 Sum_probs=45.3
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCe
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGA 58 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 58 (64)
.++..+||+++|+++||||||++++....+...+.+|++.++..+.+.+ ++.
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~ 72 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVY-NAQ 72 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEE-EC-
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEE-CCc
Confidence 4567899999999999999999999999998888899998888888877 544
No 44
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.46 E-value=7.4e-14 Score=75.61 Aligned_cols=57 Identities=26% Similarity=0.326 Sum_probs=44.1
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.....+||+++|++|||||||+++|+...+...+.++.+.+++.+.+.+ ++..+.++
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 75 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV-DKEEVTLV 75 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEE-TTEEEEEE
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEE-CCEEEEEE
Confidence 4466899999999999999999999765544445566667788888888 88887775
No 45
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.45 E-value=3.9e-13 Score=73.62 Aligned_cols=57 Identities=21% Similarity=0.315 Sum_probs=43.9
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEEC
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCFL 64 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i 64 (64)
.....+||+++|+++||||||+++|..+.+...+.||++.++ .+.+.+ ++..+.++|
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i 79 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLET-EEQRVELSL 79 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC---CEEEEEE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEE-CCEEEEEEE
Confidence 345689999999999999999999999999999999998655 567777 777666653
No 46
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.44 E-value=4.6e-13 Score=71.55 Aligned_cols=52 Identities=29% Similarity=0.538 Sum_probs=45.0
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAF 59 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 59 (64)
+...+||+++|+.++|||||+++++...+...+.+|++.++..+.+.+ ++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~ 55 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNL-NDIN 55 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEET-TC--
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEe-cCcc
Confidence 345799999999999999999999999998889999998888888888 6543
No 47
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.44 E-value=7.1e-13 Score=70.27 Aligned_cols=54 Identities=31% Similarity=0.544 Sum_probs=46.8
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...+||+++|++++|||||++++..+.+...+.+|.+..+ .+.+.+ ++..+.++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~ 57 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV-NGQEYHLQ 57 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEE-CCEEEEEE
Confidence 4689999999999999999999999999989999998665 777788 88777665
No 48
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.44 E-value=5.2e-13 Score=72.31 Aligned_cols=56 Identities=38% Similarity=0.577 Sum_probs=47.5
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
....+||+++|+++||||||+++++...+...+.++++.++....+.+ ++..+.++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 72 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQ 72 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE-TTEEEEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE-CCEEEEEE
Confidence 455799999999999999999999999988888899998888888888 88766654
No 49
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=4.8e-13 Score=73.74 Aligned_cols=56 Identities=27% Similarity=0.417 Sum_probs=41.9
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCC--CCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGK--FAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.....+||+++|+++||||||+++|+... |...+ +++|.+++.+.+.+ ++..+.+.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~-~~~~~~l~ 90 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMV-DGESATII 90 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEE-TTEEEEEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEE-CCeeeEEE
Confidence 34567999999999999999999999643 34443 45777888888889 88887764
No 50
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.43 E-value=1.3e-12 Score=70.14 Aligned_cols=55 Identities=24% Similarity=0.429 Sum_probs=46.1
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
....+||+++|+++||||||++++..+.+...+.+|++..+ ...+.+ ++..+.++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~ 74 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKY-KNEEFILH 74 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEE-TTEEEEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeee-EEEEEE-CCEEEEEE
Confidence 45689999999999999999999999999888999998555 456777 78777665
No 51
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.43 E-value=8.5e-13 Score=70.46 Aligned_cols=55 Identities=25% Similarity=0.387 Sum_probs=45.0
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+...+||+++|+++||||||++++..+.+...+.||++..+ .+.+.+ ++..+.++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~ 58 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEI-DTQRIELS 58 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC-SSCEEEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEE-CCEEEEEE
Confidence 45689999999999999999999999999888899997554 566777 77666654
No 52
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.42 E-value=4.8e-14 Score=75.71 Aligned_cols=57 Identities=37% Similarity=0.564 Sum_probs=48.3
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
+++..+||+++|+++||||||++++..+.+...+.++++.++....+.+ ++..+.++
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 75 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR-HEKRVKLQ 75 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEE-TTTTEEEE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEE-CCEEEEEE
Confidence 3567899999999999999999999999988888899988888888887 66555544
No 53
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.42 E-value=7.7e-13 Score=71.87 Aligned_cols=56 Identities=29% Similarity=0.362 Sum_probs=43.7
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.....+||+++|++|||||||+++++.+.+...+.+|++ +.+...+.+ ++..+.++
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~ 81 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMV-DGKPVNLG 81 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEEC-C-CEEEEE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEE-CCEEEEEE
Confidence 345679999999999999999999999999888889985 566777778 77777754
No 54
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.41 E-value=9.3e-13 Score=70.96 Aligned_cols=56 Identities=27% Similarity=0.329 Sum_probs=37.5
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.....+||+++|+++||||||++++..+.+...+.+|++. .+...+.+ ++..+.++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~~~ 71 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFD-NFSAVVSV-DGRPVRLQ 71 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSE-EEEEEEEE-TTEEEEEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccc-eeEEEEEE-CCEEEEEE
Confidence 3456899999999999999999999999988888899974 44667778 88777654
No 55
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=2.1e-12 Score=69.46 Aligned_cols=54 Identities=26% Similarity=0.384 Sum_probs=44.9
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...+||+++|+++||||||+++++.+.+...+.+|++..+ ...+.+ ++..+.++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~ 79 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATI-DDEVVSME 79 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEE-CCEEEEEE
Confidence 4579999999999999999999999999888899997544 566777 77776665
No 56
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.39 E-value=3e-12 Score=66.55 Aligned_cols=53 Identities=30% Similarity=0.577 Sum_probs=44.5
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
..+||+++|++++|||||++++..+.+...+.++++ +.+.+.+.+ ++..+.++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~ 54 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEV-DSSPSVLE 54 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEE-TTEEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEE-CCEEEEEE
Confidence 368999999999999999999999999888888886 455777788 77776554
No 57
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.39 E-value=3e-12 Score=67.84 Aligned_cols=54 Identities=28% Similarity=0.327 Sum_probs=45.5
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...+||+++|++++|||||++++..+.+...+.+|++. .+...+.+ ++..+.++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~~~ 56 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMV-DGKPVNLG 56 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEE-TTEEEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccc-eeEEEEEE-CCEEEEEE
Confidence 45799999999999999999999999998888899864 44666778 88777765
No 58
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.39 E-value=1.7e-12 Score=70.49 Aligned_cols=54 Identities=30% Similarity=0.372 Sum_probs=45.2
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...+||+++|++++|||||++++..+.+...+.||++. .+...+.+ ++..+.++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~~~ 60 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAV-DGQIVNLG 60 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCC-CEEEEEEC-SSCEEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccce-eEEEEEEE-CCEEEEEE
Confidence 46799999999999999999999999998888999974 44666777 77766665
No 59
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.39 E-value=1.4e-12 Score=68.50 Aligned_cols=54 Identities=30% Similarity=0.501 Sum_probs=40.8
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...+||+++|+++||||||++++....+...+ ++.+.+++.+.+.+ ++..+.++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~ 55 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTV-DGEDTTLV 55 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEE-TTEEEEEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEE-CCEEEEEE
Confidence 35799999999999999999999998876543 56677777888888 88776654
No 60
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.39 E-value=2.6e-12 Score=66.99 Aligned_cols=53 Identities=30% Similarity=0.507 Sum_probs=43.8
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
..+||+++|++++|||||++++..+.+...+.+|++..+ .+.+.+ ++..+.++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~ 54 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEV-DCQQCMLE 54 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEES-SSCEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEE-CCEEEEEE
Confidence 368999999999999999999999999888899997544 566777 66666554
No 61
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=1.3e-12 Score=70.11 Aligned_cols=54 Identities=30% Similarity=0.423 Sum_probs=45.2
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...+||+++|+++||||||++++..+.+...+.+|++.. +...+.+ ++..+.++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~~~ 69 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTV-GGKQYLLG 69 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCC-EEEEEES-SSCEEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccce-eEEEEEE-CCEEEEEE
Confidence 468999999999999999999999999988889999744 4667777 77666654
No 62
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.39 E-value=3.3e-12 Score=67.60 Aligned_cols=55 Identities=27% Similarity=0.346 Sum_probs=44.2
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
....+||+++|++++|||||+++++...+...+.+|.+..+ ...+.+ ++..+.++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~ 69 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQID 69 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEE-TTEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEE-CCEEEEEE
Confidence 45679999999999999999999999999888888887444 566677 77766654
No 63
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.38 E-value=1.3e-12 Score=70.60 Aligned_cols=54 Identities=28% Similarity=0.466 Sum_probs=40.8
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHc--CCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTD--GKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...+||+++|++|||||||+++|++ ..+...+ ++++.+++.+.+.+ ++..+.+.
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~ 59 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMV-DGESATII 59 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEE-TTEEEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEE-CCeEEEEE
Confidence 4579999999999999999999995 3344444 45677888888889 88877664
No 64
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.38 E-value=2.1e-12 Score=70.53 Aligned_cols=54 Identities=31% Similarity=0.490 Sum_probs=38.9
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...+||+++|+++||||||++++..+.+...+.+|++ +.+...+.+ ++..+.++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~ 85 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVF-ERYMVNLQV-KGKPVHLH 85 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCC-EEEEEEEEE-TTEEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccc-eeEEEEEEE-CCEEEEEE
Confidence 4579999999999999999999999998888889986 444667778 77776664
No 65
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.38 E-value=4.7e-12 Score=67.22 Aligned_cols=54 Identities=28% Similarity=0.518 Sum_probs=45.6
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...+||+++|++|+|||||++++..+.+...+.+|.+ +.+...+.+ ++..+.++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~ 55 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVI-DGETCLLD 55 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEE-TTEEEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEE-CCcEEEEE
Confidence 3579999999999999999999999998888888885 566677778 78776664
No 66
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.38 E-value=4.5e-12 Score=68.24 Aligned_cols=55 Identities=27% Similarity=0.346 Sum_probs=45.4
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
....+||+++|++++|||||++++..+.+...+.+|.+.. +...+.+ ++..+.+.
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~~~ 65 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVL-DGEEVQID 65 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEE-EEEEEEE-TTEEEEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceE-EEEEEEE-CCEEEEEE
Confidence 3457999999999999999999999999888888998744 4567778 77766654
No 67
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.37 E-value=4.9e-14 Score=76.14 Aligned_cols=59 Identities=46% Similarity=0.738 Sum_probs=50.4
Q ss_pred CCCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 4 ~~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
++..+..+||+++|+++||||||++++..+.+...+.++++.++....+.+ ++..+.++
T Consensus 27 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 85 (199)
T 3l0i_B 27 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQ 85 (199)
T ss_dssp -CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE-TTEEEEEE
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE-CCEEEEEE
Confidence 344567899999999999999999999999988888899988888888888 88776654
No 68
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.37 E-value=3.4e-13 Score=73.79 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=49.6
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
......+||+++|+++||||||+++|+.+.+...+.+++|.++....+.+ ++..+.++
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~ 67 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIKFN 67 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEE-TTEEEEEE
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEE
Confidence 34567899999999999999999998888888888899998888888888 77777665
No 69
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.37 E-value=6.6e-12 Score=65.30 Aligned_cols=53 Identities=28% Similarity=0.402 Sum_probs=43.6
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
..+||+++|++|+|||||++++..+.+...+.+|.+..+ ...+.+ ++..+.+.
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~ 55 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQID 55 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEE-CCEEEEEE
Confidence 468999999999999999999999998888888887544 556677 77766554
No 70
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.36 E-value=3.1e-12 Score=66.96 Aligned_cols=53 Identities=25% Similarity=0.336 Sum_probs=36.2
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.+||+++|+++||||||++++....+...+.++.+.+++.+.+.+ ++..+.++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 54 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV-DKEEVTLI 54 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEE-TTEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEE-CCeEEEEE
Confidence 589999999999999999999987777666666667788888888 88777765
No 71
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.35 E-value=2.4e-12 Score=69.57 Aligned_cols=54 Identities=30% Similarity=0.487 Sum_probs=41.2
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...+||+++|+++||||||++++..+.+...+.+|++..+ ...+.+ ++..+.++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~ 75 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTL-GKDEFHLH 75 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC-----CEEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEE-CCEEEEEE
Confidence 4589999999999999999999999999988999998655 556656 55555443
No 72
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=1.1e-11 Score=64.82 Aligned_cols=53 Identities=30% Similarity=0.467 Sum_probs=42.8
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
..+||+++|++++|||||++++..+.+...+.++++..+ ...+.. ++..+.++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~ 54 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISC-DKSICTLQ 54 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEE-TTEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEE-CCEEEEEE
Confidence 468999999999999999999999998888889987544 455666 66665554
No 73
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.34 E-value=1.1e-11 Score=66.22 Aligned_cols=54 Identities=26% Similarity=0.449 Sum_probs=44.1
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...+||+++|++|||||||+++++.+.+...+.+|.+. .+...+.+ ++..+.++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~-~~~~~~~~ 72 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVI-DGETCLLD 72 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEE-TTEEEEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccce-EEEEEEEE-CCEEEEEE
Confidence 46799999999999999999999999888888888864 44566777 77666554
No 74
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=8.4e-12 Score=66.85 Aligned_cols=54 Identities=26% Similarity=0.480 Sum_probs=44.0
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...+||+++|++++|||||++++..+.+...+.++++..+ ...+.. ++..+.++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~ 59 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISC-DKSVCTLQ 59 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEE-TTEEEEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEE-CCEEEEEE
Confidence 4579999999999999999999999998888889987444 455667 77666554
No 75
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.33 E-value=5.3e-12 Score=68.28 Aligned_cols=55 Identities=27% Similarity=0.461 Sum_probs=45.5
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
....+||+++|+++||||||++++..+.+...+.||++.++. ..+.+ ++..+.++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~ 76 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEV-DGKQVELA 76 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEE-TTEEEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEE-CCEEEEEE
Confidence 356899999999999999999999999998888899876553 45677 77766654
No 76
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.33 E-value=6.2e-13 Score=71.62 Aligned_cols=55 Identities=31% Similarity=0.466 Sum_probs=17.4
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcC--CCCCCCCCceeEEEEEEEEEecCCe--EEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDG--KFAEISDPTVGVDFFARLVTMRDGA--FLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~--~~~l~ 63 (64)
...+||+++|++++|||||++++... .+...+.+|++.++..+.+.+ ++. .+.++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~ 76 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTI-PDTTVSVELF 76 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEEC-TTSSEEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEE-CCcccEEEEE
Confidence 35789999999999999999999998 888888999988888888888 765 55554
No 77
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.32 E-value=1.3e-11 Score=63.96 Aligned_cols=52 Identities=29% Similarity=0.559 Sum_probs=43.0
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.+|++++|++|+|||||++++....+...+.++.+ +.+.+.+.+ ++..+.+.
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~ 54 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-DSYRKQVVI-DGETCLLD 54 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEE-TTEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccc-eEEEEEEEE-CCEEEEEE
Confidence 58999999999999999999999988888888886 444667777 77766654
No 78
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.32 E-value=1.7e-12 Score=69.46 Aligned_cols=45 Identities=22% Similarity=0.471 Sum_probs=29.5
Q ss_pred eeeEEEECCCCChHHHHHHHHHcC--CCCCCCCCceeEEEEEEEEEe
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDG--KFAEISDPTVGVDFFARLVTM 54 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~--~~~~~~~~t~~~~~~~~~~~~ 54 (64)
.+|++++|++|||||||+++++.. .+...+.+|+|.++....+.+
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~ 48 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQI 48 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeecc
Confidence 589999999999999999999984 566678899998887665543
No 79
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=8.9e-12 Score=67.64 Aligned_cols=54 Identities=28% Similarity=0.454 Sum_probs=38.4
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...+||+++|+++||||||++++..+.+...+.||++.++. ..+.+ ++..+.++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~ 76 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEV-DGKQVELA 76 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEE-TTEEEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEE-CCEEEEEE
Confidence 45789999999999999999999999998888899875553 44677 77766654
No 80
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.30 E-value=1.1e-12 Score=70.04 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=41.9
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCCC-----------CCCceeEEEEEEEE-EecCCeEEEEE
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEI-----------SDPTVGVDFFARLV-TMRDGAFLFCF 63 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~-----------~~~t~~~~~~~~~~-~~~~~~~~~l~ 63 (64)
......+||+++|+++||||||+ +++.+.+... +.||++.++....+ .+ ++..+.++
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~ 77 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEV-KGFKTRFH 77 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCS-SSCEEEEE
T ss_pred hccccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccc-cCCceEEE
Confidence 34567899999999999999999 5555566555 45688877776655 55 66666554
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.30 E-value=1.5e-11 Score=65.87 Aligned_cols=54 Identities=11% Similarity=0.179 Sum_probs=37.8
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEecCCeEEE
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAE-ISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
+.....+||+++|+++||||||++++..+.+.. .+.+|++.. ...+.. .+..+.
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~--~~~~~~-~~~~~~ 66 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN--VETFEK-GRVAFT 66 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE--EEEEEE-TTEEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee--EEEEEe-CCEEEE
Confidence 345678999999999999999999999999988 789999843 344444 554444
No 82
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.29 E-value=7.7e-12 Score=65.93 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=44.0
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
....++|+++|+++||||||++++..+.+...+.++++.++....+.+ ++..+.+
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 59 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV-NDKKITF 59 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE-TTEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe-CCceEEE
Confidence 345789999999999999999999999888777777766666666777 6666543
No 83
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.27 E-value=9.9e-13 Score=69.59 Aligned_cols=52 Identities=31% Similarity=0.426 Sum_probs=28.9
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
...+||+++|++++|||||++++..+.+...+.||++..+ ...+.+ ++..+.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~ 57 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVV-NGATVN 57 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC--------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEE-CCEEEE
Confidence 4579999999999999999999999998888888887443 333444 454444
No 84
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.27 E-value=2.3e-11 Score=64.03 Aligned_cols=51 Identities=24% Similarity=0.297 Sum_probs=36.3
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
.+|++++|++|||||||++++.+..+...+.|+++.+.....+.+ ++..+.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~l~ 53 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY-NGEKFK 53 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEE-TTEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEE-CCcEEE
Confidence 589999999999999999999987766555566655666666667 665444
No 85
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.26 E-value=2.4e-11 Score=64.67 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=42.0
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
...+|++++|++|||||||++++++..+...+.|++..+.....+.+ ++..+.+
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l 58 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY-NGEKFKV 58 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE-TTEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe-CCcEEEE
Confidence 45799999999999999999999987765555676666677777777 6655543
No 86
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.26 E-value=5.1e-11 Score=63.73 Aligned_cols=51 Identities=25% Similarity=0.397 Sum_probs=41.0
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
...+||+++|+.+||||||++++..+.+...+.||++.++. .+.. ++..+.
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~ 70 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK-GNVTIK 70 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE-TTEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEe-CCEEEE
Confidence 45899999999999999999999999998888899986654 3444 444443
No 87
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.25 E-value=6.2e-12 Score=68.49 Aligned_cols=58 Identities=24% Similarity=0.370 Sum_probs=43.9
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.....+||+++|+++||||||+++++.+.+...+.+|++..+....+...++..+.++
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 64 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFN 64 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEE
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEE
Confidence 3456899999999999999999999999888888889887776666655234434443
No 88
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.22 E-value=2.3e-11 Score=65.03 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=40.7
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCC-CCCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGK-FAEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
....+||+++|+.+||||||++++.... +...+.+|++ +..+.+.+ ++..+.+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~-~~~~~~l 71 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKS-SSLSFTV 71 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEEC-SSCEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEE-CCEEEEE
Confidence 3458999999999999999999999887 6677889987 55667777 6654443
No 89
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.84 E-value=1.3e-12 Score=70.72 Aligned_cols=54 Identities=30% Similarity=0.379 Sum_probs=42.8
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...+||+++|++|||||||++++..+.+...+.+|++ +.+...+.+ ++..+.++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~ 81 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMV-DGKPVNLG 81 (204)
Confidence 4679999999999999999999999988888888886 444555566 66555543
No 90
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.21 E-value=9.3e-11 Score=62.33 Aligned_cols=51 Identities=27% Similarity=0.512 Sum_probs=40.3
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
...+||+++|+++||||||++++..+. ...+.||++ +..+.+.+ ++..+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~-~~~~~~~ 66 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEH-RGFKLNI 66 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEE-TTEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEE-CCEEEEE
Confidence 467999999999999999999999888 667889987 44556666 6655543
No 91
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.19 E-value=1.4e-12 Score=73.37 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=35.5
Q ss_pred CCCCeeeeEEEECCC---------CChHHHHHHHHHc---CCCCCCCCCce-eEEEE
Q psy43 5 PLFDYQFRLILIGDS---------TVGKSSLLKYFTD---GKFAEISDPTV-GVDFF 48 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~---------~~GKssl~~~~~~---~~~~~~~~~t~-~~~~~ 48 (64)
+.....+||+++|++ +||||||+++|+. +.+...+.||+ +.++.
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~ 70 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFG 70 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHT
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccc
Confidence 345668999999999 9999999999998 66767777776 55544
No 92
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.19 E-value=1.1e-10 Score=66.60 Aligned_cols=53 Identities=30% Similarity=0.370 Sum_probs=45.2
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
..+|++++|++++|||||+++++.+.+...+.+|++ +.+...+.+ ++..+.++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~~~ 206 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMV-DGKPVNLG 206 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSE-EEEEEEEEE-TTEEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccc-ceeEEEEEE-CCEEEEEE
Confidence 468999999999999999999999999888899996 455667778 88887765
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.17 E-value=2.5e-11 Score=64.57 Aligned_cols=52 Identities=17% Similarity=0.362 Sum_probs=38.8
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
....+||+++|++++|||||++++..+.+ ..+.+|++. ..+.+.+ ++..+.+
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~--~~~~~~~-~~~~~~i 69 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGS--NVEEIVI-NNTRFLM 69 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSS--SCEEEEE-TTEEEEE
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCce--eeEEEEE-CCEEEEE
Confidence 45689999999999999999999999888 567788873 3456666 6654443
No 94
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.17 E-value=2.2e-10 Score=59.86 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=38.8
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
...+||+++|++++|||||++++..+.+. .+.||++. ....+.+ ++..+.
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~-~~~~~~ 54 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGF--NVETVTY-KNLKFQ 54 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSE--EEEEEEE-TTEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCcc--ceEEEEE-CCEEEE
Confidence 34689999999999999999999998875 46788873 4456666 555444
No 95
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.16 E-value=8.3e-11 Score=61.34 Aligned_cols=51 Identities=24% Similarity=0.408 Sum_probs=33.3
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.+|++++|++|||||||++++.+..+. ...++.+.. +.+.+.+ ++..+.++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~-~~~~~~~-~~~~~~~~ 52 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHT-YDRSIVV-DGEEASLM 52 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CE-EEEEEEE-TTEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccc-eEEEEEE-CCEEEEEE
Confidence 589999999999999999999876654 344666543 3566777 77776664
No 96
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.15 E-value=5.5e-11 Score=63.44 Aligned_cols=50 Identities=18% Similarity=0.418 Sum_probs=39.5
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
...+||+++|+++||||||++++..+.+. .+.||++ +..+.+.+ ++..+.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~-~~~~~~ 63 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG--SNVEEIVI-NNTRFL 63 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC--SSCEEEEE-TTEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc--cceEEEEE-CCEEEE
Confidence 45799999999999999999999988887 6778887 44456666 555444
No 97
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.14 E-value=1.9e-10 Score=63.75 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=37.3
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCC--ceeEEEEEEEEEecCCeEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDP--TVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~l 62 (64)
....+||+++|++|+|||||++++++..+.....+ ++..+.....+.+ ++..+.+
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~l 82 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVV 82 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEE
Confidence 34579999999999999999999998887655544 3334455556666 6665544
No 98
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.13 E-value=8.5e-11 Score=62.69 Aligned_cols=50 Identities=32% Similarity=0.478 Sum_probs=38.9
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
...+|++++|++|||||||++++....+ ..+.||+| +..+.+.+ ++..+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g--~~~~~~~~-~~~~l~ 63 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQG--FNIKSVQS-QGFKLN 63 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETT--EEEEEEEE-TTEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCC--eEEEEEEE-CCEEEE
Confidence 5679999999999999999999998765 45678887 44556667 655444
No 99
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.13 E-value=1.2e-10 Score=60.68 Aligned_cols=47 Identities=23% Similarity=0.460 Sum_probs=36.1
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
+||+++|+++||||||++++..+.+.. +.||++ +....+.. ++..+.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~-~~~~~~ 47 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEY-KNISFT 47 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEEC-SSCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEE-CCEEEE
Confidence 589999999999999999999888764 678887 44455555 444443
No 100
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.12 E-value=1.1e-10 Score=63.43 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=33.7
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEe
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 54 (64)
....+||+++|++++|||||+++++.+.+...+.++. .++.. +.+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~ 48 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKV 48 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EEC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEe
Confidence 3457999999999999999999999999887776544 45543 556
No 101
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.11 E-value=4.8e-11 Score=63.18 Aligned_cols=50 Identities=22% Similarity=0.444 Sum_probs=39.1
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
...+||+++|++|||||||++++..+.+ ..+.||++ +....+.+ ++..+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~--~~~~~~~~-~~~~~~ 65 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--FNVETLSY-KNLKLN 65 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT--CCEEEEEE-TTEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc--cceEEEEE-CCEEEE
Confidence 4689999999999999999999998887 56778887 34455666 554443
No 102
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.11 E-value=3.2e-10 Score=60.92 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=37.8
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
...+||+++|++|||||||++++..+.+. .+.||++. ....+.+ ++..+.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~-~~~~~~ 70 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAI-GNIKFT 70 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEE-TTEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEE-CCEEEE
Confidence 34689999999999999999999998875 56788874 3566777 664443
No 103
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.10 E-value=6.6e-11 Score=67.03 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=34.3
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcC-CCCCCC-------CCceeEEEEEEEEEecCCeEEEEE
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDG-KFAEIS-------DPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~-~~~~~~-------~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
.....++|+++|.+|+|||||+++++.. .+...+ .+|++.++....+.. ++..+.+.
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~ 68 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLT 68 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEE
T ss_pred cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec-CCeEEEEE
Confidence 3456899999999999999999997654 444444 678877777666666 66544443
No 104
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.09 E-value=1.5e-10 Score=62.24 Aligned_cols=50 Identities=24% Similarity=0.450 Sum_probs=38.6
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
...+||+++|+++||||||+++++.+.+. .+.||++ +....+.. ++..+.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~-~~~~~~ 76 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY-KNICFT 76 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEE-TTEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEE-CCEEEE
Confidence 45799999999999999999999988876 4568887 44455555 554444
No 105
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.08 E-value=5.4e-10 Score=59.26 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=37.5
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEecCCeEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFA-EISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
..+|++++|++|||||||+++++...+. ....++...++....+.+ ++..+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~ 55 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI-DGMPLH 55 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE-TTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE-CCeEEE
Confidence 3579999999999999999999987642 122233345677777888 776554
No 106
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.07 E-value=6.1e-10 Score=57.67 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=33.1
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFA-EISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
.|++++|++|+|||||++++....+. ....++...+.....+.. ++..+.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 53 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET-DRGRFLL 53 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEE-TTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEe-CCceEEE
Confidence 58999999999999999999987753 222344444566666777 6665543
No 107
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.06 E-value=2.3e-10 Score=61.84 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=34.4
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
...+|++++|++|||||||++++..+.+. .+.||++.. ...+.+ ++..+.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~-~~~~l~ 72 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTI-AGMTFT 72 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEE-TTEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEE-CCEEEE
Confidence 34689999999999999999999988874 567888743 456667 664433
No 108
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.06 E-value=5.9e-10 Score=62.92 Aligned_cols=54 Identities=26% Similarity=0.205 Sum_probs=39.0
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
...+||+++|++|||||||++++.+..+.....|.+..+.....+.. ++..+.+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~-~~~~~~l 56 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY-KGYTINL 56 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE-TTEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE-CCeEEEE
Confidence 46799999999999999999999987765444455545555555555 5554443
No 109
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.06 E-value=4.1e-10 Score=63.64 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=42.3
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
+.+|++++|++|||||||++++.+..+.....|+++.+.....+.. ++..+.+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l 54 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEY-REKEFLV 54 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEE-TTEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEE-CCceEEE
Confidence 3589999999999999999999988776556677777777777777 6666543
No 110
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.05 E-value=1.8e-10 Score=61.46 Aligned_cols=50 Identities=24% Similarity=0.374 Sum_probs=38.6
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
...+||+++|+++||||||++++..+.+.. +.||++ +....+.. ++..+.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~-~~~~~~ 69 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQY-KNISFE 69 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEE-TTEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEE-CCEEEE
Confidence 467999999999999999999999888754 678887 44455666 554443
No 111
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.03 E-value=8.5e-10 Score=60.67 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=26.4
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
...+||+++|++|||||||+++++...+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~ 55 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD 55 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 45799999999999999999999988775
No 112
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.99 E-value=1.9e-09 Score=60.32 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=37.7
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCC-CCCCCCCc-eeEEEEEEEEEecCCeEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGK-FAEISDPT-VGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~-~~~~~~~t-~~~~~~~~~~~~~~~~~~~l 62 (64)
...++|+++|++|+|||||+++++... +...+.++ +..+.....+.+ ++..+.+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~i 75 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVI 75 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEE
Confidence 457999999999999999999999876 55444444 333444455556 6655543
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.99 E-value=1.3e-09 Score=58.19 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=27.6
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEe
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 54 (64)
...++++++|++|+|||||+++++...+...+.++.+.........+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~ 67 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII 67 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE
Confidence 45799999999999999999999998876666666654443344444
No 114
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.99 E-value=7.6e-10 Score=62.86 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=40.2
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
.++|+++|++|||||||++++.+..+.....|++..+.....+.. ++..+.+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~-~~~~~~l 54 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFST-TDHQVTL 54 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEEC-SSCEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEe-CCCceEE
Confidence 589999999999999999999988765555566656676777777 5555543
No 115
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.96 E-value=1.4e-09 Score=61.42 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=40.1
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
.+|+++|++|||||||++++.+..+.....|++..+.....+.. ++..+.+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~-~~~~~~l 52 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLL-GEHLIEI 52 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEE-TTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEE-CCeEEEE
Confidence 48999999999999999999988765555566666777777777 7765543
No 116
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.95 E-value=8.8e-10 Score=58.47 Aligned_cols=34 Identities=35% Similarity=0.442 Sum_probs=30.1
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCCCCCCCcee
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVG 44 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~ 44 (64)
+||+++|++|||||||+++++...+...+.|++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t 35 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT 35 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc
Confidence 6999999999999999999999988877777654
No 117
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.92 E-value=3.7e-10 Score=60.79 Aligned_cols=41 Identities=22% Similarity=0.207 Sum_probs=27.3
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEE
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFA 49 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~ 49 (64)
.....+||+++|+++||||||++++.+. +... ++++.++..
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~ 56 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTN 56 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeecccc
Confidence 3456899999999999999999977653 4333 444444433
No 118
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.92 E-value=1.2e-09 Score=66.63 Aligned_cols=44 Identities=30% Similarity=0.466 Sum_probs=29.3
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFAR 50 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~ 50 (64)
....+||+++|+++||||||++++....+...+.||+|.++..+
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~ 81 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTK 81 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEe
Confidence 45689999999999999999999999999888999998777654
No 119
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.91 E-value=1.9e-09 Score=58.58 Aligned_cols=38 Identities=29% Similarity=0.442 Sum_probs=30.9
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCC---CCCCcee
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAE---ISDPTVG 44 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~---~~~~t~~ 44 (64)
....++++++|++|+|||||++++....+.. .+.|+++
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~ 49 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA 49 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE
Confidence 4568999999999999999999999887654 3556654
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.91 E-value=6.3e-09 Score=55.24 Aligned_cols=37 Identities=35% Similarity=0.418 Sum_probs=29.2
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCcee
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVG 44 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~ 44 (64)
....+||+++|++|+|||||++++....+. .+.++.+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~ 56 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPG 56 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCC
Confidence 345789999999999999999999988743 3444544
No 121
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.89 E-value=6.8e-09 Score=58.14 Aligned_cols=55 Identities=16% Similarity=0.013 Sum_probs=33.1
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCcee--EEEEEEEEEecCCeEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVG--VDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~l 62 (64)
....++|+++|.+|+|||||+++++...+.....++.+ .......+.. ++..+.+
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~l 74 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEV 74 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEE
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEE
Confidence 34689999999999999999999998776443222211 1223334455 5655543
No 122
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.88 E-value=1.1e-08 Score=58.80 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=32.9
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcC--CCC-CCCCCceeEEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDG--KFA-EISDPTVGVDFFA 49 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~--~~~-~~~~~t~~~~~~~ 49 (64)
..+||+++|++|||||||++++..+ .+. ..+.+|++.++..
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~ 45 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH 45 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE
Confidence 3689999999999999999999987 333 2577898866653
No 123
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.87 E-value=4.9e-09 Score=61.64 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=32.7
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHc-CCCCCCC--------CCceeEEEEEEEEEecCCeEEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTD-GKFAEIS--------DPTVGVDFFARLVTMRDGAFLFCF 63 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~-~~~~~~~--------~~t~~~~~~~~~~~~~~~~~~~l~ 63 (64)
...++|+++|++|+|||||++++.. ..+...+ .+|++.++....+.. ++..+.+.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~-~~~~~~l~ 98 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEE-RGVKLRLT 98 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC-----CEEEEEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeec-CCcccceE
Confidence 4578999999999999999999764 3343333 267766655555555 55555443
No 124
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.84 E-value=1.3e-08 Score=61.47 Aligned_cols=50 Identities=24% Similarity=0.421 Sum_probs=38.2
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
...+|++++|+++||||||++++....+. .+.||++..+ ..+.. ++..+.
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~--~~~~~-~~~~~~ 369 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNV--ETVTY-KNVKFN 369 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEES-SSCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeE--EEEEe-CCEEEE
Confidence 45799999999999999999999998865 4568887544 34555 554444
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.84 E-value=7.9e-09 Score=61.83 Aligned_cols=54 Identities=20% Similarity=0.172 Sum_probs=35.6
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFA-EISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
+..+|++++|+++||||||++++++..+. ....+.+..+.....+.. ++..+.+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~-~~~~~~l 227 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQEFVI 227 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEE-TTEEEEE
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEE-CCeEEEE
Confidence 35689999999999999999999987763 233344445666677777 7766543
No 126
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.83 E-value=2.3e-08 Score=56.27 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=36.1
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCC--CCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKF--AEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
...++|+++|+.|+|||||++++....+ ...+.++. .......+.. ++..+.+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t-~~~~~~~~~~-~~~~l~l 88 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG-LRPVMVSRTM-GGFTINI 88 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-C-CCCEEEEEEE-TTEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcc-eeeEEEEEEE-CCeeEEE
Confidence 3579999999999999999999998774 23333322 3344455556 6655543
No 127
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.82 E-value=2.9e-09 Score=56.78 Aligned_cols=30 Identities=33% Similarity=0.520 Sum_probs=26.2
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAE 37 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~~ 37 (64)
...++|+++|++|+|||||++++....+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~ 75 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP 75 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc
Confidence 457899999999999999999999887654
No 128
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.81 E-value=4.5e-09 Score=61.07 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=36.4
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
..+||+++|+++||||||++++..+.+... .||++..+. .+.. ++..+.
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~~-~~~~l~ 212 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVEY-KNISFT 212 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEEE-TTEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEec-CcEEEE
Confidence 467999999999999999999999887654 478875543 3444 444443
No 129
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.81 E-value=8.8e-09 Score=61.67 Aligned_cols=51 Identities=24% Similarity=0.248 Sum_probs=32.0
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFA-EISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
.+|+++|.++||||||++++++.++. ....|.+..+.....+.+ ++..+.+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~-~~~~~~l 53 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW-YGKTFKL 53 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE-TTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEE-CCeEEEE
Confidence 37999999999999999999987643 233345545666777778 7776654
No 130
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.80 E-value=3.2e-09 Score=58.03 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=33.6
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFF 48 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~ 48 (64)
..++++++|++|||||||+++++...+...+.++++.++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~ 76 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence 4689999999999999999999987766666678876664
No 131
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.79 E-value=1.7e-08 Score=60.45 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=33.8
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEecCCeEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFA-EISDPTVGVDFFARLVTMRDGAFLF 61 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~ 61 (64)
..+|++++|++|||||||++++++..+. ....|....+.....+.+ +|..+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~-~g~~~~ 231 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI-DGRKYV 231 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE-TTEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEE-CCEEEE
Confidence 4689999999999999999999987642 122233334455566667 666554
No 132
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.78 E-value=4.8e-09 Score=56.64 Aligned_cols=44 Identities=27% Similarity=0.289 Sum_probs=25.2
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLV 52 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~ 52 (64)
...+++++|++|+|||||++++++..+...+.|+.|.......+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~ 68 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLF 68 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEE
Confidence 45799999999999999999999877555555666644433333
No 133
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.75 E-value=6e-09 Score=59.98 Aligned_cols=31 Identities=29% Similarity=0.590 Sum_probs=21.8
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcC-CCCC
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDG-KFAE 37 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~-~~~~ 37 (64)
....++|+++|++|+|||||+++++.. .++.
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~ 46 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPE 46 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCC
Confidence 345799999999999999999998764 4443
No 134
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.71 E-value=2.1e-08 Score=57.06 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=24.1
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
..+||+++|++|||||||++++++..+.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~ 29 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQR 29 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc
Confidence 3589999999999999999999987643
No 135
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.70 E-value=7.5e-09 Score=60.65 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=30.0
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCCC---CCCCceeEEEE
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFAE---ISDPTVGVDFF 48 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~~---~~~~t~~~~~~ 48 (64)
|++++|++|||||||++++..+.+.. .+.||+|.++.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~ 40 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE 40 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE
Confidence 79999999999999999888664433 36799987764
No 136
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.69 E-value=6.6e-09 Score=56.53 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=25.2
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
...+||+++|++|+|||||++++++..+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~ 54 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKR 54 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 4578999999999999999999998763
No 137
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.68 E-value=3.2e-08 Score=59.41 Aligned_cols=28 Identities=29% Similarity=0.640 Sum_probs=25.2
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
...++|+++|++|+|||||++++++..+
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4578999999999999999999998766
No 138
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.67 E-value=1.2e-07 Score=53.45 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=25.2
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
...++|+++|++|+|||||+++++...+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~ 64 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERV 64 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3479999999999999999999998775
No 139
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.66 E-value=4.2e-08 Score=57.89 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=31.8
Q ss_pred eee-EEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 10 QFR-LILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 10 ~~k-v~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
.++ ++++|++|+|||||++++.+..+.....+....+.....+.+ +|..+.+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~-~g~~v~l 230 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI-NNRKIML 230 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEE-TTEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEE-CCEEEEE
Confidence 355 999999999999999999987753322222223455677778 7765543
No 140
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.65 E-value=2.1e-07 Score=53.60 Aligned_cols=29 Identities=34% Similarity=0.484 Sum_probs=26.0
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
....+++++|.+|||||||++++++..+.
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ 33 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVA 33 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCcee
Confidence 45778999999999999999999988764
No 141
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.64 E-value=3.6e-08 Score=59.91 Aligned_cols=52 Identities=19% Similarity=0.251 Sum_probs=29.9
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFA-EISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
.+||+++|++|+|||||++++...... ....+....++....+.+ ++..+.+
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~-~g~~l~l 285 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH-DKTMFRL 285 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEE-TTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-CCeEEEE
Confidence 578999999999999999999987532 233344445676677777 7766554
No 142
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.59 E-value=3.5e-07 Score=52.66 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=27.4
Q ss_pred CCCCCeeeeEEEECCCCChHHHHHHHHHcCCCC
Q psy43 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 4 ~~~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
.+.+...-+|+++|++|||||||++++++..+.
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~ 36 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVS 36 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCcc
Confidence 455677899999999999999999999988764
No 143
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.58 E-value=7.5e-08 Score=57.90 Aligned_cols=54 Identities=20% Similarity=0.187 Sum_probs=36.1
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCC-CCCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGK-FAEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
...+|++++|++++|||||++++.... ......+++..+.....+.. ++..+.+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~-~~~~~~l 247 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-NQQEFVI 247 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE-TTEEEEE
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE-CCceEEE
Confidence 457899999999999999999999764 22233344445666667777 7765543
No 144
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.58 E-value=1.6e-08 Score=61.27 Aligned_cols=52 Identities=23% Similarity=0.343 Sum_probs=35.7
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFA-EISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
.+||+++|++|+|||||+++++...+. ....++...++....+.+ +|..+.+
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~-~g~~v~l 276 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV-GGIPVQV 276 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEE-TTEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEE-CCEEEEE
Confidence 578999999999999999999876442 222344434555555666 6655543
No 145
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.52 E-value=3e-08 Score=60.35 Aligned_cols=51 Identities=22% Similarity=0.406 Sum_probs=38.2
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCC--CCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKF--AEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
.++|+++|.++||||||++++....+ ...+ |....++....+.+ ++..+.+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~-~gTT~d~~~~~i~~-~g~~~~l 295 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDI-PGTTRDVISEEIVI-RGILFRI 295 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCS-SCCSSCSCCEEEEE-TTEEEEE
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCC-CCeeeeeEEEEEec-CCeEEEE
Confidence 38999999999999999999998753 3333 33335677777888 7776654
No 146
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.45 E-value=4.7e-07 Score=52.96 Aligned_cols=28 Identities=36% Similarity=0.388 Sum_probs=24.9
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
...++++++|.+|||||||+++++...+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~ 192 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP 192 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3568999999999999999999998764
No 147
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.44 E-value=2.4e-07 Score=52.42 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=25.9
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
....+|+++|++++|||||++++++..+.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 35689999999999999999999988874
No 148
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.43 E-value=6.3e-08 Score=57.95 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=23.5
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
.+|+++|+++||||||++++++..+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~ 29 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS 29 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce
Confidence 68999999999999999999987653
No 149
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.43 E-value=1.4e-06 Score=52.45 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=22.8
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHc
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
....++++++|..++|||||+++++.
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~ 39 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMY 39 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHH
Confidence 34579999999999999999999953
No 150
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.41 E-value=1.7e-07 Score=53.33 Aligned_cols=25 Identities=28% Similarity=0.704 Sum_probs=22.2
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
+.|+++++|++|+|||||++.+++.
T Consensus 1 f~f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp CEEEEEEEESSSSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999999998753
No 151
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.40 E-value=5.5e-08 Score=58.45 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=29.4
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEe
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFA-EISDPTVGVDFFARLVTM 54 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~ 54 (64)
.....++|+++|+.++|||||++++....+. ....+.+..+...+.+.+
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~ 79 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMEL 79 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEE
Confidence 3456899999999999999999999987763 222233334555566666
No 152
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.39 E-value=3.3e-07 Score=54.80 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=26.0
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEe
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 54 (64)
..+++.++|.+|||||||++++....+.....|....+.....+.+
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v 66 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV 66 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEE
Confidence 4689999999999999999999987653333333323333334444
No 153
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.38 E-value=1.7e-06 Score=49.69 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=24.9
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
....+++++|++|+|||||++++++..+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~ 33 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKI 33 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 4567899999999999999999998765
No 154
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.34 E-value=1.1e-07 Score=57.20 Aligned_cols=28 Identities=18% Similarity=0.385 Sum_probs=24.4
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
...+|+++|++|||||||++++++..+.
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~ 49 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERIS 49 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 3579999999999999999999987654
No 155
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.7e-06 Score=51.49 Aligned_cols=52 Identities=19% Similarity=0.169 Sum_probs=34.9
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEecCCeEEEE
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDGAFLFC 62 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l 62 (64)
..+|.++|.++||||||++.+....-.....|....+.....+.+ ++.++.+
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~-~~~~i~l 123 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY-KGAKIQM 123 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEE-TTEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEe-CCcEEEE
Confidence 458999999999999999999975432222222223455556677 6666554
No 156
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.30 E-value=7.9e-07 Score=51.98 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=25.3
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAE 37 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~ 37 (64)
...+|+++|++|+|||||++++.+..|..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp 61 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLP 61 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSC
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCC
Confidence 34599999999999999999999987744
No 157
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.29 E-value=2.5e-07 Score=54.80 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=22.5
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
++++++|.++||||||++++....+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~ 27 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI 27 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Confidence 6899999999999999999998664
No 158
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.28 E-value=2.4e-06 Score=51.98 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=24.4
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
...++++++|..++|||||++++....
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~ 43 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIA 43 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCC
Confidence 457999999999999999999998765
No 159
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.25 E-value=7.5e-07 Score=47.92 Aligned_cols=23 Identities=30% Similarity=0.692 Sum_probs=20.0
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+++++|++|+|||||++.+++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999988753
No 160
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.25 E-value=1.4e-06 Score=52.09 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=23.9
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
...++.++|++|+|||||++.+.+...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~ 45 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVL 45 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 357999999999999999999998654
No 161
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.24 E-value=9.6e-07 Score=47.07 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.6
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
-.++++|++|+||||+++.++..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999999874
No 162
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.22 E-value=3.1e-06 Score=50.29 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=29.5
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHc---CCCCCCCCC--ceeEEEEEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTD---GKFAEISDP--TVGVDFFARLV 52 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~---~~~~~~~~~--t~~~~~~~~~~ 52 (64)
....++++++|..++|||||++++.+ +.+..+..+ |+...+....+
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~ 55 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEI 55 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEeccccccc
Confidence 34579999999999999999999984 334444444 66555544333
No 163
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.22 E-value=9.4e-07 Score=51.84 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=21.8
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
.+|+++|.++||||||++++....+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~ 183 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKP 183 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCC
Confidence 3688999999999999999987653
No 164
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.20 E-value=1e-06 Score=47.04 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.8
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999998753
No 165
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.19 E-value=1.1e-06 Score=47.77 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=19.7
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
-.++++|++|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999875
No 166
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.19 E-value=3.3e-08 Score=60.92 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=29.8
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCCCCCCceeEEE
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~ 47 (64)
...+|+++|+.++|||||++++....+...+.+++..++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i 41 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI 41 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE
Confidence 457999999999999999999987666554555554433
No 167
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.17 E-value=1.4e-06 Score=49.65 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=25.1
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
....+|+++|++++|||||++++++..+
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 3467999999999999999999998776
No 168
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.14 E-value=3.5e-06 Score=50.01 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=25.7
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHcCC
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
+.....++|+++|+.++|||||++++....
T Consensus 3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp CCCCCCCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 345668999999999999999999998743
No 169
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.12 E-value=7.6e-06 Score=48.64 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=30.4
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHc---CCCCCCCCC--ceeEEEEE
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTD---GKFAEISDP--TVGVDFFA 49 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~---~~~~~~~~~--t~~~~~~~ 49 (64)
....++++++|..++|||||++++.+ +.+..+..+ |+...+..
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~ 54 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFAD 54 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeee
Confidence 45679999999999999999999984 333444444 66554443
No 170
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.12 E-value=1.7e-06 Score=47.01 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=19.5
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
-++++|++|+|||||++.+++-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999998753
No 171
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.12 E-value=1.8e-06 Score=46.29 Aligned_cols=20 Identities=40% Similarity=0.600 Sum_probs=18.5
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy43 13 LILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~ 32 (64)
++++|++|+|||||++.++.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999884
No 172
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.11 E-value=1.9e-06 Score=47.69 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.9
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
-++++|++|+|||||++.++..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999999998864
No 173
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.10 E-value=1.1e-06 Score=51.28 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=25.1
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
...+|+++|++++|||||++++++..+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3579999999999999999999988774
No 174
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.09 E-value=2.2e-06 Score=46.06 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.7
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
-++++|++|+|||||++.++..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999998763
No 175
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.09 E-value=2.7e-06 Score=48.22 Aligned_cols=25 Identities=20% Similarity=0.491 Sum_probs=22.8
Q ss_pred eeEEEECCCCChHHHHHHHHHcCCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
++++++|.+|+|||||++++.....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 6999999999999999999997654
No 176
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.08 E-value=1.2e-06 Score=47.62 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.9
Q ss_pred eeeEEEECCCCChHHHHHHHHHcC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
..+++++|.+|+|||||+++++..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999999999865
No 177
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.08 E-value=3.8e-06 Score=50.96 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.6
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
..+|++++|..++|||||+++++..
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4699999999999999999999754
No 178
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.08 E-value=2.7e-06 Score=52.89 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.9
Q ss_pred CeeeeEEEECCCCChHHHHHHHHH
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~ 31 (64)
...++|+++|..++|||||+++++
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll 198 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIM 198 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHH
T ss_pred CCccEEEEEcCCCCCHHHHHHHHH
Confidence 457899999999999999999995
No 179
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.08 E-value=2.3e-06 Score=47.06 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=19.8
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.++..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998763
No 180
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.06 E-value=4.9e-06 Score=49.63 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.9
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
+|++++|.++||||||++++....
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 589999999999999999999766
No 181
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.05 E-value=3.3e-06 Score=45.89 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.0
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy43 13 LILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~~ 33 (64)
|+++||+|+||+||++++...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998753
No 182
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.04 E-value=3.5e-06 Score=46.24 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.5
Q ss_pred eeeEEEECCCCChHHHHHHHHHcC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.--++++|++|+|||||++.++..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 346889999999999999998853
No 183
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.04 E-value=4.6e-06 Score=47.71 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=23.8
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
...++++++|.+|||||||++++.+..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCc
Confidence 346899999999999999999999765
No 184
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.04 E-value=2.5e-06 Score=45.27 Aligned_cols=19 Identities=42% Similarity=0.583 Sum_probs=16.8
Q ss_pred eEEEECCCCChHHHHHHHH
Q psy43 12 RLILIGDSTVGKSSLLKYF 30 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~ 30 (64)
-++++|++|+|||||++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999953
No 185
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.03 E-value=2.8e-06 Score=51.29 Aligned_cols=26 Identities=31% Similarity=0.687 Sum_probs=22.8
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCCC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
.++++++|++|+|||||++.+++..+
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccc
Confidence 46799999999999999999987643
No 186
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.02 E-value=8e-06 Score=50.46 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=25.9
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCCCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
....+|+++|..++|||||++++++..+.
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 45789999999999999999999988763
No 187
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.01 E-value=3.5e-06 Score=47.02 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.7
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998864
No 188
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.01 E-value=4e-06 Score=45.68 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.9
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
-++++|++|+||||++..++..
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999999864
No 189
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.00 E-value=4.2e-06 Score=44.33 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.1
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.++...
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999987643
No 190
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.97 E-value=1.5e-05 Score=50.41 Aligned_cols=29 Identities=7% Similarity=-0.023 Sum_probs=24.9
Q ss_pred CCCCCeeeeEEEECCCCChHHHHHHHHHc
Q psy43 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 4 ~~~~~~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
........+|+++|..++|||||+++++.
T Consensus 6 ~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~ 34 (691)
T 1dar_A 6 EYDLKRLRNIGIAAHIDAGKTTTTERILY 34 (691)
T ss_dssp CCCGGGEEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCccccccEEEEECCCCCCHHHHHHHHHH
Confidence 34456789999999999999999999983
No 191
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.96 E-value=1.1e-05 Score=50.35 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=23.4
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
...++|+++|..++|||||+++++..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHh
Confidence 44789999999999999999999865
No 192
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.96 E-value=5.9e-06 Score=46.31 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998643
No 193
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.96 E-value=8.4e-06 Score=42.95 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=21.8
Q ss_pred CCCCCCCCeeeeEEEECCCCChHHHHHHHHHc
Q psy43 1 MTVDPLFDYQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 1 m~~~~~~~~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
|+++..+ -..++++|++|+||||++..+..
T Consensus 1 m~~~~~~--g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 1 MSTTNHD--HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp --CCCTT--SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCccCCC--CcEEEEEcCCCCCHHHHHHHHHH
Confidence 4444433 34689999999999999998764
No 194
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.95 E-value=4.8e-06 Score=45.26 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=20.7
Q ss_pred eeeeEEEECCCCChHHHHHHHHHc
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
....+.++|++|+|||||++.+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988764
No 195
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.95 E-value=5.3e-06 Score=46.98 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.7
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+.++|++|+|||||++.+++-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 196
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.95 E-value=4.7e-06 Score=46.19 Aligned_cols=22 Identities=36% Similarity=0.323 Sum_probs=19.5
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+.++|++|+|||||++.+++-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 197
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.93 E-value=1e-05 Score=51.10 Aligned_cols=28 Identities=32% Similarity=0.548 Sum_probs=24.8
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
..++|+++|+.++|||||++++++..+.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~ 95 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLL 95 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4689999999999999999999987643
No 198
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.92 E-value=7.5e-06 Score=44.99 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=18.2
Q ss_pred eEEEECCCCChHHHHHHHHH
Q psy43 12 RLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~ 31 (64)
-++++|++|+|||||+..++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999877
No 199
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.92 E-value=6.3e-06 Score=47.09 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.7
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+.++|++|+|||||++.+++-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 200
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.92 E-value=7e-06 Score=46.12 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.9
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 201
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.92 E-value=7.2e-06 Score=45.81 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.8
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 202
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.91 E-value=7.6e-06 Score=45.80 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.9
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 203
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.91 E-value=6.5e-06 Score=46.44 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.1
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998643
No 204
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.91 E-value=8e-06 Score=47.85 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.2
Q ss_pred eeeEEEECCCCChHHHHHHHHHcC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.-+++++|++|+|||||++.+++-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998753
No 205
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.91 E-value=8.6e-06 Score=47.74 Aligned_cols=23 Identities=39% Similarity=0.725 Sum_probs=21.4
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...+.++|.+|+|||||++++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999999999985
No 206
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.91 E-value=6.4e-06 Score=48.81 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.6
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
++++++|.+|+|||||++++....
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998653
No 207
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.91 E-value=8.4e-06 Score=46.28 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=20.1
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 208
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.91 E-value=6.9e-06 Score=46.67 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.1
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998643
No 209
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.90 E-value=8.5e-06 Score=45.80 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.0
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+.++|++|+|||||++.+++-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 210
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.90 E-value=7.2e-06 Score=45.84 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.7
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 211
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.90 E-value=7.6e-06 Score=45.25 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.7
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 212
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.90 E-value=7.3e-06 Score=46.54 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.7
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5789999999999999998864
No 213
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.89 E-value=8.8e-06 Score=45.22 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.2
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988643
No 214
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.89 E-value=8.7e-06 Score=46.55 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.1
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999988643
No 215
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.89 E-value=9.6e-06 Score=43.24 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=19.0
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-++++|++|+||||+++.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 216
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.89 E-value=9.7e-06 Score=43.90 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.7
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.-++++|++|+||||+.+.+..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 217
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.88 E-value=8.8e-06 Score=44.17 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=18.9
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
++.++|++|+|||||+..++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 588999999999999998775
No 218
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.88 E-value=7.7e-06 Score=48.42 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|||||||++.+++-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998754
No 219
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.88 E-value=9e-06 Score=43.63 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=20.9
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
..++++|++|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999988643
No 220
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.88 E-value=8.5e-06 Score=45.94 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.7
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998864
No 221
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.87 E-value=9.4e-06 Score=46.19 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.8
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 222
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.87 E-value=1.2e-05 Score=44.70 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=19.7
Q ss_pred eeEEEECCCCChHHHHHHHHH
Q psy43 11 FRLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~ 31 (64)
..++++|++|+||||+++.++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999988
No 223
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.87 E-value=8.8e-06 Score=46.03 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.8
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+.++|++|+|||||++.+++-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 224
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.87 E-value=1e-05 Score=42.38 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=19.4
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
.++++|++|+||||+++.+..
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999875
No 225
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.87 E-value=9.9e-06 Score=45.83 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.9
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999864
No 226
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.86 E-value=1.2e-05 Score=47.57 Aligned_cols=24 Identities=42% Similarity=0.394 Sum_probs=21.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
.++++|++|+|||||++.+++...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999997543
No 227
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.86 E-value=1.1e-05 Score=48.13 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|||||||++.+++-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999998744
No 228
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.86 E-value=1.1e-05 Score=47.72 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.2
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|||||||++.+++-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998653
No 229
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.85 E-value=9.9e-06 Score=44.02 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=19.4
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-++++|++|+|||||+..++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 230
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.85 E-value=1.1e-05 Score=47.70 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=20.2
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|||||||++.+++-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998653
No 231
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.85 E-value=1.1e-05 Score=47.70 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.2
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|||||||++.+++-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999998643
No 232
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.84 E-value=1.2e-05 Score=43.46 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.5
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..++++|++|+||||+++.+..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 233
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.84 E-value=1.2e-05 Score=47.79 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|||||||++.+++-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999998753
No 234
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.84 E-value=2.4e-05 Score=47.08 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.7
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
...+.++|++|+|||||++.+++-.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 3479999999999999999998743
No 235
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.84 E-value=1e-05 Score=45.62 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.1
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998643
No 236
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.84 E-value=1e-05 Score=45.85 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.7
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+.++|++|+|||||++.+++-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998864
No 237
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.84 E-value=1.7e-05 Score=47.53 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=23.6
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
...++++++|..++|||||+++++...
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhc
Confidence 456999999999999999999998543
No 238
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.83 E-value=1.2e-05 Score=47.68 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.1
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|||||||++.+++-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999998643
No 239
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.83 E-value=1.9e-05 Score=47.47 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=21.0
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
-.+.++|++|+|||||+++++...
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSC
T ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Confidence 357899999999999999998764
No 240
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.83 E-value=6.9e-06 Score=45.19 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=14.8
Q ss_pred eEEEECCCCChHHHHHHHHH
Q psy43 12 RLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~ 31 (64)
-++++|++|+||||+++.++
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999998
No 241
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.83 E-value=1.3e-05 Score=45.57 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+++-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 242
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.83 E-value=1.2e-05 Score=43.50 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.2
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...+.++|++|+|||||++.+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 243
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.82 E-value=1.3e-05 Score=45.41 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=19.0
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
.++++|++|+||||+++.+..
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999998764
No 244
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.82 E-value=8.3e-06 Score=44.87 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=19.6
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+.++|++|+|||||++.+++-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 245
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.82 E-value=1e-05 Score=47.66 Aligned_cols=23 Identities=17% Similarity=0.418 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|||||||++.+++-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999998653
No 246
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.81 E-value=8.7e-07 Score=54.33 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=24.6
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCCC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAE 37 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~~ 37 (64)
...+++++|..++|||||++++....+..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~ 31 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVAS 31 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcc
Confidence 46799999999999999999998755543
No 247
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.81 E-value=1.4e-05 Score=46.39 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=18.9
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
.++++|++|+|||||++.+.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 689999999999999998763
No 248
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.81 E-value=1.4e-05 Score=45.97 Aligned_cols=23 Identities=57% Similarity=0.758 Sum_probs=20.2
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
..++++|++|+|||||++.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 357899999999999999998 54
No 249
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.81 E-value=1.4e-05 Score=43.10 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=19.8
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..-++++|++|+||||+.+.+..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999988764
No 250
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.81 E-value=1.6e-05 Score=41.45 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=19.1
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
.|++.|.+|+||||+...+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 251
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.80 E-value=1.7e-05 Score=45.61 Aligned_cols=23 Identities=43% Similarity=0.437 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.+....
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 57899999999999999998644
No 252
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.79 E-value=1.3e-05 Score=42.54 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.3
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
-.+++.|++|+|||+|+..++.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988764
No 253
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.78 E-value=1.9e-05 Score=49.92 Aligned_cols=32 Identities=9% Similarity=0.093 Sum_probs=26.1
Q ss_pred CCCCCCCCeeeeEEEECCCCChHHHHHHHHHc
Q psy43 1 MTVDPLFDYQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 1 m~~~~~~~~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
|+.........+++++|..++|||||+++++.
T Consensus 1 m~~~~~~~~~~~I~IvG~~~aGKSTL~~~Ll~ 32 (693)
T 2xex_A 1 MAREFSLEKTRNIGIMAHIDAGKTTTTERILY 32 (693)
T ss_dssp -CCSSCSTTEEEEEEECCGGGTHHHHHHHHHH
T ss_pred CCCcCCcccceEEEEECCCCCCHHHHHHHHHH
Confidence 44444556789999999999999999999984
No 254
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.77 E-value=1.2e-05 Score=46.60 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=19.6
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.++.-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999988753
No 255
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.77 E-value=1.3e-05 Score=50.42 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.5
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHc
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
....+++++|++|+|||||+++++.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~ 31 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLY 31 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCChHHHHHHHHHH
Confidence 4567999999999999999999984
No 256
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.77 E-value=2.2e-05 Score=42.56 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=19.6
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
++|++.|.+|+||||+...++.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 257
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.76 E-value=5.3e-06 Score=51.08 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=21.8
Q ss_pred CeeeeEEEECCCCChHHHHHHHHH
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~ 31 (64)
....+|+++|.+++|||||+++++
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHH
T ss_pred hcCCEEEEECCCCCcHHHHHHHHH
Confidence 356899999999999999999996
No 258
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.76 E-value=1.9e-05 Score=46.87 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.0
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999988643
No 259
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.76 E-value=1.6e-05 Score=47.48 Aligned_cols=22 Identities=41% Similarity=0.529 Sum_probs=19.8
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+.++|++|||||||++.+++-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999998863
No 260
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.76 E-value=1.6e-05 Score=45.76 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=19.7
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998864
No 261
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.75 E-value=2.4e-05 Score=42.16 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=19.6
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..++++|++|+||||+...++.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999998874
No 262
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.75 E-value=1e-05 Score=47.70 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|||||||++.+++-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998743
No 263
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.75 E-value=2.4e-05 Score=42.44 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.7
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
++|++.|.+|+||||+...++.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 264
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.75 E-value=2.3e-05 Score=42.67 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.7
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..++++|++|+||||+.+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998764
No 265
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.75 E-value=2.6e-05 Score=46.28 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=23.0
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHc
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
....++++++|..++|||||++++..
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~ 33 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTY 33 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHh
Confidence 34579999999999999999999986
No 266
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.74 E-value=2e-05 Score=42.41 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.7
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..|+++|.+|+||||+...+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 267
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.74 E-value=2.4e-05 Score=46.89 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=23.2
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
...++++++|..++|||||+++++..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999864
No 268
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.74 E-value=3e-05 Score=46.90 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=23.3
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
...++++++|..++|||||+++++..
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHH
Confidence 45799999999999999999999753
No 269
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.74 E-value=2e-05 Score=45.67 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.3
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHc
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
....-+.++|++|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456789999999999999998875
No 270
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.74 E-value=2.5e-05 Score=41.70 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=19.1
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
.|++.|.+|+||||+...+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998875
No 271
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.73 E-value=2.4e-05 Score=41.17 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.3
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-|++.|.+|+||||+.+.+..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 272
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.73 E-value=2.2e-05 Score=42.23 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.0
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
++|+++|.+|+||||+...+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 273
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.71 E-value=2.3e-05 Score=45.30 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.0
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.-.++++|++|+||||++..++.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 35788999999999999999873
No 274
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.70 E-value=3.2e-05 Score=40.12 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=18.3
Q ss_pred eeEEEECCCCChHHHHHHHH
Q psy43 11 FRLILIGDSTVGKSSLLKYF 30 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~ 30 (64)
.-|++.|.+|+||||+...+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999998
No 275
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.70 E-value=3.1e-05 Score=40.57 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.9
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.-|++.|.+|+||||+...+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999886
No 276
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.70 E-value=3.6e-05 Score=45.68 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=22.1
Q ss_pred eeeeEEEECCCCChHHHHHHHHHc
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..++++++|..++|||||++++..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~ 25 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITK 25 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhC
Confidence 368999999999999999999986
No 277
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.69 E-value=7e-06 Score=47.67 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=20.0
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
-.++++|++|+|||||++.+....
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 378999999999999999997643
No 278
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.69 E-value=3e-05 Score=45.30 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.1
Q ss_pred eeeEEEECCCCChHHHHHHHHH
Q psy43 10 QFRLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~ 31 (64)
-..+.++|++|+|||||++.+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999987
No 279
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.68 E-value=3.2e-05 Score=41.91 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=18.5
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-++++|++|+|||+|+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999873
No 280
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.68 E-value=1.4e-05 Score=42.87 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.8
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
.+.++|++|+|||||+..+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998764
No 281
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.67 E-value=3.2e-05 Score=40.41 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.2
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
-.+++.|++|+|||+++..++.
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999988764
No 282
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.67 E-value=4.2e-05 Score=41.22 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.1
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
+.+.++|.+|+||||+...+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 283
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.67 E-value=3.6e-05 Score=41.34 Aligned_cols=22 Identities=32% Similarity=0.265 Sum_probs=19.3
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.-++++|.+|+|||||++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3578999999999999999875
No 284
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.66 E-value=3.2e-05 Score=42.94 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=19.2
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy43 13 LILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~~ 33 (64)
++++|++|+|||+|++.++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998753
No 285
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.66 E-value=3.8e-05 Score=40.58 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=19.0
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
.|++.|.+|+||||+...+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 286
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.66 E-value=3.1e-05 Score=44.72 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=19.9
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.--++++|++|+||||++..++.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999998864
No 287
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.65 E-value=4.4e-05 Score=40.81 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.9
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
....|++.|.+|+||||+...+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3568999999999999999998864
No 288
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.65 E-value=3.4e-05 Score=42.90 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.3
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...+.++|++|+|||||++.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998875
No 289
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.64 E-value=4.6e-05 Score=40.29 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.7
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..|++.|.+|+||||+...+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 290
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.64 E-value=3.5e-05 Score=45.03 Aligned_cols=23 Identities=13% Similarity=0.447 Sum_probs=20.4
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.--++++|++|+||||++..++.
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999998874
No 291
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.64 E-value=7.3e-05 Score=45.30 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.4
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHc
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...++++++|..++|||||+++++.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHH
Confidence 4578999999999999999999864
No 292
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.64 E-value=6.9e-05 Score=46.92 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=23.8
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcCC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.....|+++|.+++|||+|++++++..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 346789999999999999999999765
No 293
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.63 E-value=4.9e-05 Score=40.24 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.6
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..|+++|.+|+||||+...++.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 294
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.63 E-value=3.7e-05 Score=43.68 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=18.9
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy43 13 LILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~ 32 (64)
++++|++|+|||+|++.++.
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999875
No 295
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.63 E-value=6.1e-05 Score=40.66 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.3
Q ss_pred eeeEEEECCCCChHHHHHHHHHcC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
...++++|.+|+||||++..+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999999864
No 296
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.63 E-value=6.6e-05 Score=43.13 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=21.2
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHc
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.....+.+.|++|+|||||++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999987653
No 297
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.62 E-value=6.3e-05 Score=40.44 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=21.6
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHc
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...+.|++.|.+|+||||+...+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999998864
No 298
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.62 E-value=3.9e-05 Score=47.89 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=23.9
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCCC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
...+|+++|..++|||||++++....+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~ 31 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA 31 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc
Confidence 3579999999999999999999865543
No 299
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.62 E-value=6e-05 Score=44.01 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.4
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHc
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...+-+.++|++|+|||||+..+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999988764
No 300
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.61 E-value=5.6e-05 Score=44.26 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.4
Q ss_pred eeeeEEEECCCCChHHHHHHHHHc
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
....++++|.+|+|||||+++++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999864
No 301
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.61 E-value=5.1e-05 Score=44.66 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.5
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
-.++++|++|+|||||++.+..-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37899999999999999999864
No 302
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.61 E-value=6e-05 Score=39.87 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.2
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...+++.|.+|+||||+...+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998874
No 303
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.61 E-value=3.9e-05 Score=45.26 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.9
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
.++++|++|+||||+++.++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998753
No 304
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.60 E-value=6.8e-05 Score=39.99 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=21.1
Q ss_pred eeeEEEECCCCChHHHHHHHHHcC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
...++++|.+|+||||+...+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999988764
No 305
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.59 E-value=6.9e-05 Score=41.75 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.3
Q ss_pred eeeeEEEECCCCChHHHHHHHHHc
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..+.|++.|++|+||||+..++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999864
No 306
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.59 E-value=7.2e-05 Score=40.26 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.5
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...|++.|.+|+||||+...+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998874
No 307
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.59 E-value=4.7e-05 Score=40.26 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=17.7
Q ss_pred eEEEECCCCChHHHHHHHHH
Q psy43 12 RLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~ 31 (64)
-.+++|++|+|||+|+..+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999874
No 308
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.59 E-value=5.9e-05 Score=42.24 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=19.5
Q ss_pred eeEEEECCCCChHHHHHHHHH
Q psy43 11 FRLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~ 31 (64)
..++++|++|+||||+++.++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999887
No 309
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.58 E-value=3.6e-05 Score=46.77 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.7
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999998753
No 310
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.58 E-value=6e-05 Score=41.39 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=19.7
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
+.++++|++|+||+|...+++.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 311
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.58 E-value=9.9e-05 Score=39.61 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=20.6
Q ss_pred eeeeEEEECCCCChHHHHHHHHHc
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
....|++.|.+|+||||+...+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999988874
No 312
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.58 E-value=4.8e-05 Score=44.11 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=19.1
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
.+++.|++|+|||+|++.++.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999875
No 313
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.58 E-value=5.3e-05 Score=41.19 Aligned_cols=22 Identities=27% Similarity=0.687 Sum_probs=19.6
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
++|++.|.+|+||||+...+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 314
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.57 E-value=5.7e-05 Score=46.59 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998643
No 315
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.57 E-value=7.7e-05 Score=39.41 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.1
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...|++.|.+|+||||+...+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35699999999999999998873
No 316
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.57 E-value=6.7e-05 Score=39.77 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.7
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..|++.|.+|+||||+...+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998864
No 317
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.57 E-value=5.1e-05 Score=42.76 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=19.2
Q ss_pred EEEECCCCChHHHHHHHHHcC
Q psy43 13 LILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~~ 33 (64)
++++|++|+|||+|++.++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999998753
No 318
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.56 E-value=3.1e-05 Score=48.34 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=21.1
Q ss_pred eEEEECCCCChHHHHHHHHHcCCCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKFA 36 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~~ 36 (64)
.++++|++|+|||||++.+++-.++
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 4999999999999999999986433
No 319
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.56 E-value=2.9e-05 Score=40.57 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.9
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-++++|++|+|||+|++.++.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998875
No 320
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.56 E-value=6.1e-05 Score=41.20 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=19.7
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
-++++|++|+|||+|+..++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999863
No 321
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.55 E-value=6.3e-05 Score=39.63 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.0
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
+++++|.+|+||||+...++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 322
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.55 E-value=0.00011 Score=47.44 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=23.4
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHcC
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.....+|+++|..++|||||+++++..
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHh
Confidence 345789999999999999999999753
No 323
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.55 E-value=7.4e-05 Score=42.72 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.0
Q ss_pred eeeeEEEECCCCChHHHHHHHHHc
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...-+++.|++|+||||+...+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999875
No 324
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.55 E-value=7.4e-05 Score=43.00 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.6
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...+.++|++|+|||||++.+..
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998875
No 325
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.55 E-value=7.1e-05 Score=44.25 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.8
Q ss_pred CeeeeEEEECCCCChHHHHHHHH
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYF 30 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~ 30 (64)
....|++++|.+++|||||+.++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45789999999999999999886
No 326
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.55 E-value=9.4e-05 Score=46.93 Aligned_cols=28 Identities=7% Similarity=-0.052 Sum_probs=24.2
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHc
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.......+++++|..++|||||+.+++.
T Consensus 5 ~~~~~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 5 TPIARYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred CCcccccEEEEECCCCCCHHHHHHHHHH
Confidence 3446678999999999999999999974
No 327
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.54 E-value=5.5e-05 Score=44.75 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=19.9
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.--++++|++|+||||++..++.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 34688999999999999998864
No 328
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.54 E-value=6.6e-05 Score=40.49 Aligned_cols=21 Identities=19% Similarity=0.063 Sum_probs=19.4
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-++++|++|+|||+|+..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 329
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.54 E-value=5.3e-05 Score=44.78 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=19.0
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
.++++|++|+||||+++.++.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998764
No 330
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.54 E-value=5.4e-05 Score=42.99 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.1
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
-++++|++|+|||+|+..++..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988753
No 331
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.54 E-value=8.7e-05 Score=39.77 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.1
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..|++.|.+|+||||+...+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 332
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.54 E-value=5.6e-05 Score=44.44 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=20.7
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
++.++|++|+|||||++.+++..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998753
No 333
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.52 E-value=9.5e-05 Score=39.80 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.4
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...|++.|.+|+||||+...+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999874
No 334
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.52 E-value=7.3e-05 Score=40.56 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=19.8
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.-.+++.|++|+|||+++..++.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999988764
No 335
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.52 E-value=8.3e-05 Score=38.72 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=19.6
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
++|++.|.+|+||||+...+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998875
No 336
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.51 E-value=4.8e-05 Score=39.76 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.2
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
-.+++.|++|+|||+++..++.
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4579999999999999988764
No 337
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.51 E-value=7.2e-05 Score=46.10 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=22.8
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHc
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
....+++++|..++|||||+++++.
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~ 35 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLL 35 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCChHHHHHHHHHh
Confidence 4578999999999999999999985
No 338
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.51 E-value=6.1e-05 Score=45.50 Aligned_cols=23 Identities=39% Similarity=0.419 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
++.++|++|+|||||++.++...
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 78999999999999999988653
No 339
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.51 E-value=7.5e-05 Score=40.92 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.5
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...|++.|.+|+||||+...++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999874
No 340
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.50 E-value=6.6e-05 Score=46.25 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=19.8
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.--++++|++|+|||||+..++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34688999999999999998864
No 341
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.50 E-value=8e-05 Score=41.78 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=18.4
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-++++|++|+|||||...++.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998863
No 342
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.50 E-value=4.2e-05 Score=42.18 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.0
Q ss_pred eeeEEEECCCCChHHHHHHHHHcC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
-.-+++.|++|+||||+++.+...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 467899999999999999998764
No 343
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.50 E-value=9.4e-05 Score=39.98 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.1
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...+.++|++|+||||++..+..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998764
No 344
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.50 E-value=9.5e-05 Score=40.28 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.3
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.+.|++.|.+|+||||+...++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998864
No 345
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.49 E-value=0.00011 Score=40.56 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.9
Q ss_pred eeeeEEEECCCCChHHHHHHHHHc
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
....|++.|.+|+||||+...++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 346
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.49 E-value=0.00011 Score=38.82 Aligned_cols=23 Identities=13% Similarity=0.341 Sum_probs=19.8
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...|++.|.+|+||||+...+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988764
No 347
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.49 E-value=9.2e-05 Score=39.60 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=20.9
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
..|++.|.+|+||||+...+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 348
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.49 E-value=6.3e-05 Score=43.84 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.3
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||||++.++.-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999988643
No 349
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.48 E-value=7.2e-05 Score=45.83 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=18.2
Q ss_pred eEEEECCCCChHHHHHHHHH
Q psy43 12 RLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~ 31 (64)
.+.++|++|+|||||++.++
T Consensus 31 ~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHh
Confidence 57899999999999999876
No 350
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.48 E-value=0.0001 Score=40.49 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=19.4
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
+.|++.|.+|+||||+...+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 351
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.48 E-value=8.2e-05 Score=41.36 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.5
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..+++.|++|+|||++++.++.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3589999999999999998874
No 352
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.47 E-value=0.0001 Score=44.57 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=22.0
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
...+|+++|.+|+||||+..+++..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998754
No 353
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.47 E-value=9.7e-05 Score=39.27 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=19.0
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-|++.|.+|+||||+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 354
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.47 E-value=8.2e-05 Score=46.61 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 57899999999999999998643
No 355
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.47 E-value=0.00016 Score=42.70 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.6
Q ss_pred CCCeeeeEEEECCCCChHHHHHHHHH
Q psy43 6 LFDYQFRLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 6 ~~~~~~kv~~~G~~~~GKssl~~~~~ 31 (64)
+.....|++++|.+++||||++.++.
T Consensus 5 ~~~~~~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 5 SGIHIRKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp CCCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCceeEEEECCCCCcHHHHHHHHH
Confidence 34568999999999999999999864
No 356
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.47 E-value=7.7e-05 Score=40.70 Aligned_cols=22 Identities=14% Similarity=0.413 Sum_probs=19.8
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..|++.|.+|+||||+...++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 357
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.47 E-value=6.9e-05 Score=46.40 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.0
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
+++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999998864
No 358
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.47 E-value=0.00013 Score=45.21 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
+++++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988643
No 359
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.46 E-value=7.3e-05 Score=46.18 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.2
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
-+.++|++|+|||||++.+++-.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999998643
No 360
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.45 E-value=9.9e-05 Score=39.68 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=18.6
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-+++.|++|+|||+++..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998864
No 361
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.45 E-value=0.00014 Score=42.57 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.4
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.-++++|++|+|||+|...++.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4578899999999999999875
No 362
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.45 E-value=8.3e-05 Score=44.74 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=19.0
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-++++|++|+||||+++.++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999875
No 363
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.44 E-value=0.00011 Score=39.16 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=18.7
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
.+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999988864
No 364
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.43 E-value=9.3e-05 Score=43.68 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=21.0
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+++++|.+|+|||||++.+...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 57999999999999999999864
No 365
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.42 E-value=0.00012 Score=39.30 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=19.4
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.-+++.|++|+|||+|+..++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999988764
No 366
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.42 E-value=3.1e-05 Score=41.76 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=18.7
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-|++.|.+|+||||++..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998864
No 367
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.42 E-value=0.0002 Score=38.03 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.4
Q ss_pred eeeeEEEECCCCChHHHHHHHHHc
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
....+++.|.+|+||||+...+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999998764
No 368
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.40 E-value=0.00014 Score=39.01 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.0
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.-+.++|.+|+|||||+.+++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998764
No 369
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.39 E-value=0.00015 Score=38.35 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=19.0
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
.|++.|.+|+||||+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 370
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.39 E-value=0.00011 Score=41.44 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.6
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
-.++++|.+|+||||+.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 371
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.39 E-value=0.00013 Score=40.80 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.5
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHc
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.....++++|.+|+||||+...+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999875
No 372
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.39 E-value=0.00011 Score=41.45 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=18.7
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-++++|++|+|||+|+..++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998874
No 373
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.39 E-value=0.00013 Score=38.48 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=19.9
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...+++.|.+|+||||+.+.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999998875
No 374
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.39 E-value=0.00017 Score=42.25 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=20.8
Q ss_pred CCeeeeEEEECCCCChHHHHHHHH
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYF 30 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~ 30 (64)
....+|++++|...+||||++.+.
T Consensus 4 ~~~~~klLlLG~geSGKSTi~KQm 27 (327)
T 3ohm_A 4 ARRELKLLLLGTGESGKSTFIKQM 27 (327)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHH
T ss_pred hcccceEEEEcCCCccHHHHHHHH
Confidence 356899999999999999999875
No 375
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.39 E-value=0.00012 Score=45.91 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58899999999999999998643
No 376
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.38 E-value=0.00014 Score=38.70 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.7
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..|++.|.+|+||||+...+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988865
No 377
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.38 E-value=7.8e-05 Score=44.08 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=19.5
Q ss_pred eEEEECCCCChHHHHHHHHH
Q psy43 12 RLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~ 31 (64)
+++++|..++|||||++++.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999998
No 378
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.38 E-value=7.1e-05 Score=43.28 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.1
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
-++++|.+|+|||||++.+....
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 56889999999999999998653
No 379
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.38 E-value=0.00014 Score=38.59 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=19.7
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..|++.|.+|+||||+...+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 380
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.38 E-value=0.00016 Score=40.55 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.0
Q ss_pred eeeEEEECCCCChHHHHHHHHH
Q psy43 10 QFRLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~ 31 (64)
.+.+++.|++|+||||+...+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999876
No 381
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.38 E-value=0.00013 Score=42.96 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.1
Q ss_pred CeeeeEEEECCCCChHHHHHHHH
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYF 30 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~ 30 (64)
...+|++++|...+||||++.+.
T Consensus 3 ~~~~klLLLG~geSGKSTi~KQm 25 (340)
T 4fid_A 3 AKPITVMLLGSGESGKSTIAKQL 25 (340)
T ss_dssp -CCEEEEEEECTTSSHHHHHHHH
T ss_pred CCcceEEEECCCCCcHHHHHHHH
Confidence 45789999999999999999874
No 382
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.36 E-value=0.00018 Score=39.69 Aligned_cols=28 Identities=18% Similarity=0.199 Sum_probs=21.8
Q ss_pred CCCCeeeeEEEECCCCChHHHHHHHHHc
Q psy43 5 PLFDYQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 5 ~~~~~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
+.+.....++++|.+|+||||+...+..
T Consensus 11 ~~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 11 DDKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp ---CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3455567899999999999999988764
No 383
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.36 E-value=0.00015 Score=39.58 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.8
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
+.|++.|.+|+||||+...++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 384
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.36 E-value=0.00017 Score=37.66 Aligned_cols=21 Identities=10% Similarity=0.346 Sum_probs=19.1
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
.|++.|.+|+||||+...+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 385
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.36 E-value=0.00015 Score=44.69 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 386
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.35 E-value=0.00014 Score=39.81 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=17.9
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-++++|++|+|||+|+.+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999887753
No 387
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.35 E-value=0.00022 Score=38.72 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.6
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.+.|++.|.+|+||||+...+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999875
No 388
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.34 E-value=7.3e-05 Score=46.38 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.0
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+|||||++.+++-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 389
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.34 E-value=0.00014 Score=41.08 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.3
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.--+++.|++|+|||+++..++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 35789999999999999999875
No 390
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.34 E-value=0.0001 Score=43.50 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=21.0
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+++++|.+|+|||||++.+...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhh
Confidence 57999999999999999999864
No 391
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.34 E-value=0.00013 Score=42.09 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=19.7
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
--+++.|++|+|||+|++.++.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 392
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.34 E-value=0.00023 Score=37.53 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=19.6
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..|++.|.+|+||||+...+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 393
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.34 E-value=0.00013 Score=45.10 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=20.2
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998654
No 394
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.34 E-value=0.00016 Score=40.00 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.4
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.-+++.|++|+|||+++..++.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998864
No 395
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.33 E-value=0.00015 Score=44.62 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.7
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.++++|++|+||||+++.++.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998753
No 396
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.33 E-value=0.00016 Score=40.56 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.1
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
-.+++.|++|+|||+++..++..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45999999999999999998753
No 397
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.32 E-value=0.00018 Score=45.08 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=20.5
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.+.++|++|+|||||++.+++-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 398
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.32 E-value=0.00018 Score=41.99 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.5
Q ss_pred eeeeEEEECCCCChHHHHHHHHH
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~ 31 (64)
....++++|.+|+||||+++.++
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 35688999999999999999986
No 399
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.31 E-value=0.00021 Score=42.12 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=20.9
Q ss_pred CeeeeEEEECCCCChHHHHHHHHH
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~ 31 (64)
...+|++++|.+.+||||++.++.
T Consensus 30 ~~~~klLlLG~geSGKST~~KQmk 53 (353)
T 1cip_A 30 AREVKLLLLGAGESGKSTIVKQMK 53 (353)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHH
T ss_pred cccceEEEEcCCCCCchhHHHHHH
Confidence 458999999999999999998853
No 400
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.31 E-value=0.00021 Score=37.23 Aligned_cols=19 Identities=42% Similarity=0.581 Sum_probs=16.6
Q ss_pred EEEECCCCChHHHHHHHHH
Q psy43 13 LILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~ 31 (64)
.+++|++|+|||+++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999988754
No 401
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.31 E-value=0.00019 Score=40.27 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.7
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..|++.|.+|+||||+...+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998874
No 402
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.30 E-value=0.00024 Score=39.59 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.2
Q ss_pred eeeeEEEECCCCChHHHHHHHHHc
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..+.|.+.|.+|+||||+...+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998875
No 403
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.30 E-value=0.00016 Score=41.39 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.3
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
--+++.|++|+|||+|++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999998875
No 404
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.30 E-value=0.00012 Score=49.07 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=19.5
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
|+.++|++|+|||||+..+..
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 789999999999999998875
No 405
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.30 E-value=0.00019 Score=37.93 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.0
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
.|++.|.+|+||||+...+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988864
No 406
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.30 E-value=9.9e-05 Score=45.91 Aligned_cols=22 Identities=18% Similarity=0.458 Sum_probs=19.9
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
+++++|++|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 7899999999999999988763
No 407
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.29 E-value=0.00018 Score=39.83 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=20.4
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
-.-+++.|.+|+||||++..+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999875
No 408
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.29 E-value=0.00028 Score=40.17 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=21.1
Q ss_pred CeeeeEEEECCCCChHHHHHHHHH
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~ 31 (64)
...+.|++.|.+|+||||+...+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999887
No 409
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.29 E-value=0.00019 Score=38.96 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=19.5
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..-+++.|.+|+||||+...+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999998754
No 410
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.29 E-value=0.0002 Score=40.81 Aligned_cols=22 Identities=45% Similarity=0.632 Sum_probs=19.5
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
-+++.|+.|+|||+|+..+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999998754
No 411
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.29 E-value=0.00032 Score=47.13 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=19.4
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
+++++|++|+|||||++.+..
T Consensus 446 ~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTT
T ss_pred EEEEEecCCCcHHHHHHHhcc
Confidence 789999999999999998875
No 412
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.28 E-value=0.00014 Score=38.34 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=16.1
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...|++.|.+|+||||+...+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 413
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.28 E-value=0.00028 Score=44.24 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=17.9
Q ss_pred eeeeEEEECCCCChHHHHHHHHHc
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...+++++|..++|||||+.+++.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~ 26 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQ 26 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999975
No 414
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.28 E-value=0.00019 Score=41.55 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.6
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+++.|++|+|||+++..++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988753
No 415
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.28 E-value=0.0002 Score=42.15 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=16.9
Q ss_pred EEEECCCCChHHHHHHHHH
Q psy43 13 LILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~ 31 (64)
.+++|++|+|||||+..++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999998865
No 416
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.27 E-value=0.00014 Score=41.84 Aligned_cols=20 Identities=25% Similarity=0.389 Sum_probs=18.6
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy43 13 LILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~ 32 (64)
+++.|++|+|||++++.++.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 417
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.27 E-value=8.2e-05 Score=46.05 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=18.9
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
.+.++|++|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 688999999999999987765
No 418
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.27 E-value=0.00017 Score=44.16 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=17.5
Q ss_pred eEEEECCCCChHHHHHHHH
Q psy43 12 RLILIGDSTVGKSSLLKYF 30 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~ 30 (64)
-++++|++|+|||||+..+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5789999999999999995
No 419
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.26 E-value=0.00023 Score=45.83 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=24.7
Q ss_pred eeeeEEEECCCCChHHHHHHHHHcCCC
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
...+|+++|+.++|||||++.+.+..+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 457999999999999999999999776
No 420
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00021 Score=44.80 Aligned_cols=22 Identities=27% Similarity=0.688 Sum_probs=19.8
Q ss_pred EEEECCCCChHHHHHHHHHcCC
Q psy43 13 LILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~~~ 34 (64)
+.++|++|+|||||++.+++-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7899999999999999998654
No 421
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.25 E-value=0.00031 Score=41.40 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.4
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.-|++.|++|+|||+|...++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998874
No 422
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.25 E-value=0.0002 Score=40.90 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.0
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
--+++.|++|+|||+++..++..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35899999999999999988753
No 423
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.24 E-value=0.00034 Score=38.73 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.4
Q ss_pred CeeeeEEEECCCCChHHHHHHHHH
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~ 31 (64)
.....+++.|..||||||++.+++
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 346789999999999999999997
No 424
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.24 E-value=0.00012 Score=45.55 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=19.5
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
+++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988753
No 425
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.24 E-value=0.00025 Score=46.66 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.1
Q ss_pred eEEEECCCCChHHHHHHHHHcCCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGKF 35 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~~ 35 (64)
.+.++|++|+|||||++.++++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 579999999999999999996643
No 426
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.24 E-value=0.00025 Score=39.95 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.4
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..+++.|++|+|||+++..++.
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 427
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.23 E-value=0.00022 Score=42.47 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.4
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
-.++++|++|+|||||+..++.
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998874
No 428
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.23 E-value=0.00021 Score=40.78 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.0
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-+++.|+.|+|||+|+..+..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 429
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.22 E-value=0.00026 Score=40.07 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.9
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.-|++.|.+|+||||+...+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999886
No 430
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.21 E-value=0.00022 Score=41.81 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=19.6
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
-+.++|++|+|||+|+..++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998864
No 431
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.21 E-value=0.00027 Score=39.57 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.7
Q ss_pred eeeeEEEECCCCChHHHHHHHHHc
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
....+++.|++|+|||+++..++.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 345789999999999999998875
No 432
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.21 E-value=0.00024 Score=41.06 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=18.3
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy43 13 LILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~ 32 (64)
+++.|++|+|||+++..++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998864
No 433
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.20 E-value=0.00023 Score=40.94 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=19.7
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.-.++++|++|+||||++..++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34788999999999999998763
No 434
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.20 E-value=0.0003 Score=41.51 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.8
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
-|+++|++|+|||+|...++..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999853
No 435
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.20 E-value=0.00026 Score=40.06 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.4
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
--+++.|++|+|||+++..+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999998764
No 436
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.20 E-value=0.00034 Score=39.61 Aligned_cols=22 Identities=14% Similarity=0.373 Sum_probs=18.8
Q ss_pred eeeEEEECCCCChHHHHHHHHH
Q psy43 10 QFRLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~ 31 (64)
...+++.|++|+|||+++..++
T Consensus 67 ~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4469999999999999997654
No 437
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.18 E-value=0.00029 Score=39.01 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.0
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
..+++.|++|+|||+|...++..-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998653
No 438
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.17 E-value=0.00035 Score=35.92 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.0
Q ss_pred eeeEEEECCCCChHHHHHHHHHcCC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
..-+++.|++|+|||++...+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999887643
No 439
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.16 E-value=0.00041 Score=39.62 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=19.0
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..-+++.|++|+|||+|+..++.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34567779999999999998874
No 440
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.16 E-value=0.00033 Score=40.57 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=19.6
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.--++++|++|+||||++..++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34688999999999999998864
No 441
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.16 E-value=0.00057 Score=37.88 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=18.6
Q ss_pred eee-EEEECCCCChHHHHHHHHHc
Q psy43 10 QFR-LILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~k-v~~~G~~~~GKssl~~~~~~ 32 (64)
..| |+++|++|+||+|...+++.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344 56789999999999988874
No 442
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.16 E-value=0.00027 Score=42.36 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=18.1
Q ss_pred eEEEECCCCChHHHHHHHHH
Q psy43 12 RLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~ 31 (64)
-+.++|++|+|||+|+..++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 47899999999999999876
No 443
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.16 E-value=0.00025 Score=40.88 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.0
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.-.+++.|++|+|||+++..+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999998874
No 444
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.15 E-value=0.00033 Score=41.11 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.5
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
-+++.|++|+|||+|...++..
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4788999999999999999854
No 445
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.15 E-value=0.00038 Score=41.80 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=21.4
Q ss_pred CeeeeEEEECCCCChHHHHHHHHH
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~ 31 (64)
...+|++++|...+||||++.+..
T Consensus 38 ~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 38 RATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred hccceEEEecCCCCchhhHHHHHH
Confidence 458999999999999999999853
No 446
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.13 E-value=0.00033 Score=40.19 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.0
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
-.+++.|++|+|||+++..++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999998753
No 447
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.12 E-value=0.00034 Score=40.14 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=18.2
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy43 13 LILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~ 32 (64)
+++.|++|+|||+++..++.
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999988764
No 448
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.12 E-value=0.00033 Score=41.90 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.2
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..-|+++|.+|+||||+..+++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999875
No 449
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.11 E-value=0.00032 Score=40.57 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=19.6
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
--+++.|++|+|||+++..++.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998874
No 450
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.11 E-value=0.00021 Score=44.39 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.2
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
-..++++|.+|+|||||++.+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 35789999999999999998875
No 451
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.10 E-value=0.00047 Score=35.97 Aligned_cols=22 Identities=41% Similarity=0.371 Sum_probs=19.4
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
-.+++.|..|+||||+...+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 452
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.10 E-value=0.00035 Score=40.41 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.3
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
--+++.|++|+|||+|+..++..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999998853
No 453
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.09 E-value=0.00034 Score=43.14 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=18.7
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-++++|++|+|||+|++.+..
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998764
No 454
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.09 E-value=0.00024 Score=44.61 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=16.0
Q ss_pred eEEEECCCCChHHHHHHH
Q psy43 12 RLILIGDSTVGKSSLLKY 29 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~ 29 (64)
.++++|++|+|||||++.
T Consensus 350 ~vaIiGpnGsGKSTLl~~ 367 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNE 367 (670)
T ss_dssp EEEEECSTTSSHHHHHTT
T ss_pred EEEEEeeCCCCHHHHHHH
Confidence 478999999999999964
No 455
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.09 E-value=0.00042 Score=40.61 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.6
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..++++|++|+|||+|...++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998874
No 456
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.07 E-value=0.00023 Score=46.84 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=20.0
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.+.++|++|+|||||++.+++-
T Consensus 701 ivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 457
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.07 E-value=0.00044 Score=43.38 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=20.5
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHc
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
....+++++|..++|||||+++++.
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~ 28 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLE 28 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999999975
No 458
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.07 E-value=0.00038 Score=40.05 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.1
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...+++.|++|+|||+++..++.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 34699999999999999998874
No 459
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.05 E-value=0.00052 Score=37.36 Aligned_cols=20 Identities=40% Similarity=0.512 Sum_probs=16.8
Q ss_pred eEEEECCCCChHHHHHHHHH
Q psy43 12 RLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~ 31 (64)
-.+++|++|+|||+++..+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 35788999999999998753
No 460
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.05 E-value=0.0004 Score=40.22 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.5
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
--+++.|++|+|||+++..+..
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998875
No 461
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.05 E-value=0.00048 Score=40.30 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.1
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...+++.|++|+|||+++..++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998875
No 462
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.05 E-value=0.00047 Score=39.74 Aligned_cols=23 Identities=43% Similarity=0.508 Sum_probs=19.7
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.-.+++.|++|+|||.|+..++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999987764
No 463
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.04 E-value=0.00056 Score=46.10 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.2
Q ss_pred CCeeeeEEEECCCCChHHHHHHHHHc
Q psy43 7 FDYQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 7 ~~~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
....++|+++|..++|||||++++..
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~ 318 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITT 318 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHh
Confidence 34579999999999999999999975
No 464
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.03 E-value=0.00044 Score=41.63 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.3
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
--+++.|++|+|||+|++.+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998764
No 465
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.02 E-value=0.00016 Score=40.35 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=18.6
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-+++.|++|+|||+++..++.
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 388999999999999998864
No 466
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.01 E-value=0.00047 Score=41.77 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.1
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
-.++++|++|+|||+++..++.
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 3679999999999999988764
No 467
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.01 E-value=0.00069 Score=41.74 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=19.8
Q ss_pred eeeeEEEECCCCChHHHHHHHHH
Q psy43 9 YQFRLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 9 ~~~kv~~~G~~~~GKssl~~~~~ 31 (64)
....|+++|.+|+||||++..++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999987
No 468
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.01 E-value=0.00011 Score=41.01 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=17.1
Q ss_pred EEEECCCCChHHHHHHHHHc
Q psy43 13 LILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~~~ 32 (64)
++++|++|+|||||+..++.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 46789999999999998764
No 469
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.00 E-value=0.00089 Score=36.33 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=22.4
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHcC
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
...+.|.+.|..|+||||+...+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 34788999999999999999988753
No 470
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.00 E-value=0.00056 Score=36.56 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=18.7
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
.+.+.|.+|+||||+...+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988764
No 471
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.00 E-value=0.0004 Score=39.84 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=19.1
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
.+++.|++|+|||+++..+..
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 689999999999999998875
No 472
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.99 E-value=0.00056 Score=39.98 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.7
Q ss_pred eeeEEEECCCCChHHHHHHHHHcC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
...+++.|++|+|||+++..++..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999998753
No 473
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.99 E-value=0.00061 Score=37.97 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=20.7
Q ss_pred eeEEEECCCCChHHHHHHHHHcCC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.-+++.|++|+|||+++..+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 468999999999999999987643
No 474
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.98 E-value=0.00052 Score=40.16 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=19.4
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
--+++.|++|+|||+|+..++.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999998875
No 475
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.98 E-value=0.0006 Score=39.73 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.7
Q ss_pred eeeEEEECCCCChHHHHHHHHHcC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
...+++.|++|+|||++...++..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988753
No 476
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.98 E-value=0.00046 Score=42.28 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.4
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
-++++|++|+|||+|+..++..
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999998753
No 477
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.96 E-value=0.00044 Score=43.44 Aligned_cols=16 Identities=50% Similarity=0.538 Sum_probs=14.9
Q ss_pred eEEEECCCCChHHHHH
Q psy43 12 RLILIGDSTVGKSSLL 27 (64)
Q Consensus 12 kv~~~G~~~~GKssl~ 27 (64)
.+.++|++|+|||||+
T Consensus 46 ~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 46 LVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHh
Confidence 5789999999999996
No 478
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.96 E-value=0.00061 Score=40.70 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=17.7
Q ss_pred eEEEECCCCChHHHHHHHHH
Q psy43 12 RLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~ 31 (64)
-.+++|++|+|||+|+..+.
T Consensus 28 ~~~i~G~nG~GKstll~ai~ 47 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAIS 47 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999875
No 479
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.95 E-value=0.0007 Score=36.98 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=17.6
Q ss_pred eEEEECCCCChHHHHHHHHH
Q psy43 12 RLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~ 31 (64)
=+++.|++|+|||+|+.+++
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47889999999999998875
No 480
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.95 E-value=0.0006 Score=37.09 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=19.8
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.-+++.|++|+|||++...+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 35899999999999999988754
No 481
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.94 E-value=0.00016 Score=42.68 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=17.5
Q ss_pred eEEEECCCCChHHHHHHHH
Q psy43 12 RLILIGDSTVGKSSLLKYF 30 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~ 30 (64)
.++++|++|+|||+|+..+
T Consensus 62 ~~~lvG~NGaGKStLl~aI 80 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDAL 80 (415)
T ss_dssp EEEEEESHHHHHHHHTHHH
T ss_pred cEEEECCCCCCHHHHHHHH
Confidence 7899999999999999776
No 482
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.00069 Score=41.01 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.1
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.--+++.|++|+|||+|+..++.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999874
No 483
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.93 E-value=0.00093 Score=37.50 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.3
Q ss_pred eeeEEEECCCCChHHHHHHHHH
Q psy43 10 QFRLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~ 31 (64)
.+++++.|.+|||||+++..++
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHH
Confidence 6899999999999999976654
No 484
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.92 E-value=0.00061 Score=41.90 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.1
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-++++|++|+|||+|++.++.
T Consensus 66 GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998875
No 485
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.91 E-value=0.00074 Score=39.95 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=18.1
Q ss_pred eEEEECCCCChHHHHHHHHH
Q psy43 12 RLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~ 31 (64)
-.+++|++|+|||+++..+.
T Consensus 28 ~~~i~G~nG~GKttll~ai~ 47 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAY 47 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHH
Confidence 57899999999999999875
No 486
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.90 E-value=0.00073 Score=39.80 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.8
Q ss_pred eeeEEEECCCCChHHHHHHHHHcC
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
...+++.|++|+|||++++.++..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998753
No 487
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.89 E-value=0.0005 Score=46.13 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=19.2
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
++.++|++|+|||||++.+.+
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998875
No 488
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.89 E-value=0.0007 Score=40.96 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.6
Q ss_pred eEEEECCCCChHHHHHHHHHcC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~ 33 (64)
-+++.|++|+|||++++.+...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999998753
No 489
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.88 E-value=0.00071 Score=42.11 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.4
Q ss_pred eEEEECCCCChHHHHHHHHHcCC
Q psy43 12 RLILIGDSTVGKSSLLKYFTDGK 34 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~~~ 34 (64)
.++++|++|+|||+|+..+....
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEeCCCCCHHHHHHHHhccC
Confidence 68999999999999999988643
No 490
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.88 E-value=0.00037 Score=39.62 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.4
Q ss_pred eeEEEECCCCChHHHHHHHHHc
Q psy43 11 FRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~ 32 (64)
..+++.|++|+|||+++..+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 491
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.86 E-value=0.00088 Score=38.67 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=18.5
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-+++.|++|+|||+++..++.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998864
No 492
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.86 E-value=0.00077 Score=41.24 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.1
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-+++.|++|+|||+|++.++.
T Consensus 51 gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998875
No 493
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.86 E-value=0.00071 Score=40.82 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.5
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-+++.|++|+|||+|...++.
T Consensus 4 ~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHH
Confidence 478999999999999998874
No 494
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.86 E-value=0.00073 Score=39.47 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.3
Q ss_pred eeEEEECCCCChHHHHHHHHHcC
Q psy43 11 FRLILIGDSTVGKSSLLKYFTDG 33 (64)
Q Consensus 11 ~kv~~~G~~~~GKssl~~~~~~~ 33 (64)
.-+++.|++|+|||++...+...
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc
Confidence 45899999999999999999864
No 495
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.85 E-value=0.00089 Score=38.92 Aligned_cols=18 Identities=44% Similarity=0.637 Sum_probs=16.0
Q ss_pred EEEECCCCChHHHHHHHH
Q psy43 13 LILIGDSTVGKSSLLKYF 30 (64)
Q Consensus 13 v~~~G~~~~GKssl~~~~ 30 (64)
.+++|++|+|||+++..+
T Consensus 26 ~~i~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAI 43 (339)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 478999999999999975
No 496
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.85 E-value=0.00046 Score=39.83 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=18.2
Q ss_pred eEEEECCCCChHHHHHHHHH
Q psy43 12 RLILIGDSTVGKSSLLKYFT 31 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~ 31 (64)
-.+++|++|+|||+|+..+.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 46899999999999999976
No 497
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.00082 Score=40.76 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.5
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.-.+++.|++|+|||.|+..++.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 498
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.00082 Score=40.79 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.4
Q ss_pred eeeEEEECCCCChHHHHHHHHHc
Q psy43 10 QFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 10 ~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
.--+++.|++|+|||.|+..++.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999874
No 499
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.84 E-value=0.0011 Score=37.20 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=20.4
Q ss_pred CeeeeEEEECCCCChHHHHHHHHHc
Q psy43 8 DYQFRLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 8 ~~~~kv~~~G~~~~GKssl~~~~~~ 32 (64)
...+++.++|.+|+||||+..+++.
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 3578999999999999999998864
No 500
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.84 E-value=0.00077 Score=39.88 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.2
Q ss_pred eEEEECCCCChHHHHHHHHHc
Q psy43 12 RLILIGDSTVGKSSLLKYFTD 32 (64)
Q Consensus 12 kv~~~G~~~~GKssl~~~~~~ 32 (64)
-+.+.|++|+|||+|+.+++.
T Consensus 63 i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999998864
Done!