RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy43
(64 letters)
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction,
structural genomics, structural genomics consortium,
SGC, protein transport; HET: GDP; 1.50A {Homo sapiens}
SCOP: c.37.1.8 PDB: 1z0a_A*
Length = 191
Score = 79.9 bits (198), Expect = 4e-21
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
P Y F+ I+IGD+ VGKS LL FTD +F + D T+GV+F AR+V +
Sbjct: 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDG 67
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 79.9 bits (198), Expect = 5e-21
Identities = 17/52 (32%), Positives = 34/52 (65%)
Query: 2 TVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVT 53
+ +D+ F+ ++IG++ GKS LL F + KF + S+ T+GV+F ++++
Sbjct: 2 HMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIIN 53
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 79.6 bits (197), Expect = 8e-21
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
D+ F+ ++IG + GKS LL F + KF + S+ T+GV+F +R+V +
Sbjct: 19 SIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGG 71
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 79.3 bits (196), Expect = 1e-20
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 6 LFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
++DY F+++LIGDS VGKS+LL FT +F S T+GV+F R + +
Sbjct: 1 MYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG 51
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling
protein, GDPNP, SLP2A, exophil GTP-binding,
lipoprotein, membrane, methylation; HET: GNP; 1.80A
{Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 78.8 bits (195), Expect = 1e-20
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54
D +DY + + +GDS VGK+S+L +TDGKF TVG+DF + V
Sbjct: 5 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVY 55
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 78.4 bits (194), Expect = 1e-20
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVT 53
+ Y F+ I+IGD VGKS LL FT+ KF T+GV+F R++
Sbjct: 9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIE 58
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 78.0 bits (193), Expect = 2e-20
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 2 TVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
T D +DY F+++LIGDS VGKS+LL FT +F S T+GV+F R + +
Sbjct: 21 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG 75
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2iez_A*
Length = 217
Score = 78.5 bits (194), Expect = 3e-20
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
+DY +L+ +GDS VGK++ L +TD KF TVG+DF + V
Sbjct: 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNA 71
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation,
vesicular transport, acetylation, golgi apparatus,
lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces
cerevisiae}
Length = 223
Score = 77.8 bits (192), Expect = 6e-20
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
+D F+++LIGDS VGKS+LL FT +F S T+GV+F R + +
Sbjct: 7 GYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEG 59
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 76.5 bits (189), Expect = 1e-19
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
+++ F+++LIG+S VGK++LL FT +F+ S T+GV+F R V +
Sbjct: 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGT 71
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein;
HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 75.7 bits (187), Expect = 1e-19
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
Q +++++GD GK+SL F F + T+G+DFF R +T+
Sbjct: 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPG 52
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 75.7 bits (187), Expect = 2e-19
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
F++I+IGDS VGK+ L F G+F + ++ T+GVDF R V + DG
Sbjct: 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-DG 66
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 75.8 bits (187), Expect = 2e-19
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
D ++++IG+S VGKSSLL FTD F T+GVDF + +++
Sbjct: 9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDG 61
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 75.4 bits (186), Expect = 3e-19
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
+P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R + +
Sbjct: 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG 62
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 75.0 bits (185), Expect = 4e-19
Identities = 19/53 (35%), Positives = 36/53 (67%)
Query: 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
D +D+ F+L+L+GD++VGK+ +++ F G F+E T+GVDF + + ++
Sbjct: 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQG 75
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis,
RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 75.0 bits (185), Expect = 5e-19
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
+FDY F++++IG+S+VGK+S L + D F TVG+DF + + D
Sbjct: 2 SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND 54
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 74.1 bits (183), Expect = 5e-19
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 2 TVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
++ +D+ F+L++IGDS VGKSSLL F D F+ T+GVDF R V +
Sbjct: 1 SMARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEING 55
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 74.6 bits (184), Expect = 6e-19
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
D++ ++I+IG VGK+SL++ FTD F E TVGVDF + V +R
Sbjct: 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRG 72
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 74.6 bits (184), Expect = 6e-19
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTD--GKFAEISDPTVGVDFFARLVTMRD 56
+D + ++ ++G++TVGKS+L+ FT KF + T GV+ VT+ D
Sbjct: 13 IDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPD 68
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 74.2 bits (183), Expect = 7e-19
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
+DY F+L+LIGDS VGK+ +L F++ F T+G+DF R + +
Sbjct: 2 AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG 54
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 74.2 bits (183), Expect = 1e-18
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 2 TVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
+++P +DY F+L+LIGDS VGKS LL F D + E T+GVDF R + +
Sbjct: 25 SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG 79
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 201
Score = 73.8 bits (182), Expect = 1e-18
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
+D+ F+++LIG++ VGK+ L++ FT G F T+GVDF + V +
Sbjct: 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEING 72
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 73.0 bits (180), Expect = 2e-18
Identities = 23/55 (41%), Positives = 31/55 (56%)
Query: 2 TVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
V DY F+L+LIG+S+VGK+S L + D F TVG+DF + V D
Sbjct: 14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHD 68
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 73.0 bits (180), Expect = 2e-18
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 1 MTVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
+ FDY F+L++IG+S+VGK+S L + D F TVG+DF + V +
Sbjct: 14 LYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE 69
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 73.1 bits (180), Expect = 3e-18
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTM 54
++ +DY F+L+LIG+S VGKS LL F+D + T+GVDF + V +
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL 52
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP,
structural genomics, SGC, structural genomics
consortium, signaling protein; HET: GDP; 2.15A {Homo
sapiens}
Length = 199
Score = 72.7 bits (179), Expect = 3e-18
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
++++L GD+ VGKSS L +F E T+GVDF + + +
Sbjct: 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDG 74
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 73.1 bits (180), Expect = 3e-18
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
+D +++LIGDS VGKS LL F + KF T+G+DF + V +
Sbjct: 14 GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING 66
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein;
HET: GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 72.5 bits (178), Expect = 4e-18
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
++ +L+G+S+VGKSS++ T F E ++ T+G F +V + D
Sbjct: 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLND 53
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 71.0 bits (175), Expect = 9e-18
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 1 MTVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
M +L+L+GD GKSSL+ F +F E + T+G FF++ + + D
Sbjct: 3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVND 58
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 71.1 bits (175), Expect = 9e-18
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISD-PTVGVDFFARLVTMRD 56
+D F+++L+GDS VGK+ LL F DG F + TVG+DF +++ +
Sbjct: 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDG 57
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 70.7 bits (174), Expect = 1e-17
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
D +++LIGDS VGKS LL F + KF T+G+DF + V +
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING 49
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 70.4 bits (173), Expect = 4e-17
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
QF+L+L+GD GK++ +K G+F + T+GV+ + G
Sbjct: 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 62
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 68.7 bits (169), Expect = 6e-17
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
Y F+++L+G+ VGK+SL+ + + KF + T+G F + + +
Sbjct: 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGG 52
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein
transport; HET: GDP; 1.25A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 68.3 bits (168), Expect = 9e-17
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
F++IL+GD VGKSSL+ + KF T+GV+F + + +
Sbjct: 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDG 53
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 67.9 bits (167), Expect = 1e-16
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
+ +++++G+ VGKSS+++ + G F + T+GVDF R + + D
Sbjct: 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND 51
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain,
RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp
protein; HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 68.9 bits (169), Expect = 1e-16
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
+F+L+ +G+ +VGK+SL+ F F T+G+DF ++ + + D
Sbjct: 13 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 62
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 68.5 bits (168), Expect = 2e-16
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+ +++ LIGD VGK++ + DG+F + + TVG G
Sbjct: 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQG 58
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 67.2 bits (165), Expect = 3e-16
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
+F+L+ +G+ +VGK+SL+ F F T+G+DF ++ + + D
Sbjct: 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 60
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 67.3 bits (165), Expect = 3e-16
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
+ ++ L+GD+ VGKSS++ F F PT+G F + V +
Sbjct: 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN 69
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 66.8 bits (164), Expect = 5e-16
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVT 53
++I++GDS VGK+SL+ + + K+++ T+G DF + VT
Sbjct: 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVT 51
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution,
protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A*
1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A*
1huq_A* 2hei_A* 1z07_A*
Length = 170
Score = 66.0 bits (162), Expect = 7e-16
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
QF+L+L+G+S VGKSSL+ F G+F E + T+G F + V + D
Sbjct: 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 52
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein
transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP:
c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A*
1vg9_B*
Length = 207
Score = 66.5 bits (163), Expect = 8e-16
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
++I++GDS VGK+SL+ + + KF+ T+G DF + V + D
Sbjct: 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDD 54
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 170
Score = 65.2 bits (159), Expect = 2e-15
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
+L+L+G++ VGKSS++ F FAE +PT+G F + VT+ +
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINE 49
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 64.4 bits (158), Expect = 3e-15
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
+ ++ L+GD+ VGKSS++ F + F +PT+G F + V ++
Sbjct: 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQN 52
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 64.2 bits (157), Expect = 6e-15
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 1 MTVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
+ D F+++L+G+S VGKS+L F + +P D + R + + D
Sbjct: 14 LYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV-DK 69
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 59.9 bits (146), Expect = 2e-13
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 2 TVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVT 53
++DP +L+++G VGKS+L F F DPT+ D + ++ +
Sbjct: 1 SMDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICS 51
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling
protein; HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 59.4 bits (145), Expect = 2e-13
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRDG 57
F+++L+G+S VGKS+L F + + D + R + + D
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV-DK 48
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 58.1 bits (141), Expect = 1e-12
Identities = 13/49 (26%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAE--ISDPTVGVDFFARLVTMRD 56
+ +L+++G++ GK++LL+ K ++ + TVG+D + +RD
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRD 50
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 57.2 bits (139), Expect = 2e-12
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47
++I++G VGKS+L F +F E +PT +
Sbjct: 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY 51
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 57.2 bits (139), Expect = 2e-12
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47
++I++G VGKS+L F +F E +PT +
Sbjct: 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY 55
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 56.1 bits (136), Expect = 6e-12
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 5 PLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47
P +R+++ G VGKSSL+ F G F + PT+ +
Sbjct: 3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY 45
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 54.1 bits (131), Expect = 4e-11
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47
+++++G VGK+SL F +G+F+E DPTV +
Sbjct: 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY 61
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 53.7 bits (130), Expect = 5e-11
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47
++ ++G +VGKSSL F +G+F + DPT+ F
Sbjct: 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF 43
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 53.3 bits (129), Expect = 6e-11
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47
++I++G VGKS+L F +F E +PT +
Sbjct: 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY 41
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling
protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A*
3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 53.3 bits (129), Expect = 6e-11
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 2 TVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVT 53
V ++L+++GD VGKS+L F F + DPT+ D + +
Sbjct: 10 AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTE 60
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 52.5 bits (127), Expect = 9e-11
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47
+++L+++G VGKS+L F + DPT+ +
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY 40
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 51.7 bits (125), Expect = 2e-10
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47
+R+ + G VGKSSL+ F G F E PTV +
Sbjct: 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY 40
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics,
structural genomics consortium, SGC; HET: GDP; 1.90A
{Homo sapiens} SCOP: c.37.1.8
Length = 196
Score = 52.2 bits (126), Expect = 2e-10
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47
+ +L + G + VGKS+L+ F +F DPT+ +
Sbjct: 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY 65
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD
and GEM like GTP protein 1, structural genomics; HET:
GDP; 2.50A {Homo sapiens}
Length = 175
Score = 51.8 bits (125), Expect = 2e-10
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVT 53
+R++L+GD VGK+SL F + ++ + G D + R +T
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQL-GEDVYERTLT 46
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 51.4 bits (124), Expect = 3e-10
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47
+++L+++G VGKS+L F + DPT+ +
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY 41
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 51.0 bits (123), Expect = 4e-10
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47
+++L+++G VGKS+L F G F E DPT+ +
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY 40
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A
{Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 51.1 bits (123), Expect = 5e-10
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47
+++L+++G VGKS+L F + DPT+ +
Sbjct: 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY 58
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A*
3rap_R*
Length = 167
Score = 50.6 bits (122), Expect = 5e-10
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
+++++++G VGKS+L F G F E DPT+ DF+ + + +
Sbjct: 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDS 48
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 50.4 bits (120), Expect = 2e-09
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
+ ++ LIGD GK+SLLK F T G++ +
Sbjct: 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIK 87
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 49.5 bits (119), Expect = 2e-09
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47
+ L ++G GKS+L F +F DP + +
Sbjct: 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY 58
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 47.6 bits (114), Expect = 8e-09
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47
+ RL ++GD+ GKSSL+ F G + ++ + T +
Sbjct: 7 ELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQY 43
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 47.7 bits (114), Expect = 9e-09
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 7 FDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFA 49
+++++GD VGK+ LL F+ G+ PTV +F
Sbjct: 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH 62
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 47.7 bits (114), Expect = 1e-08
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTD--GKFAEISDPTVGVDFFARLVTMRDG 57
+ +R++LIG+ VGKS+L F + G D + R + + DG
Sbjct: 31 SESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVL-GEDTYERTLMV-DG 84
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 46.8 bits (112), Expect = 2e-08
Identities = 9/38 (23%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47
+ ++ ++G+ + GKS+L+ + G + + P G F
Sbjct: 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF 56
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus}
SCOP: c.37.1.8
Length = 205
Score = 46.3 bits (110), Expect = 4e-08
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFA 49
DP + + +++++GDS GK++LL F F E PTV ++ A
Sbjct: 22 DPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA 67
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 45.7 bits (109), Expect = 5e-08
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDP-TVGVDFFARLVTMRDG 57
+R++LIG+ VGKS+L F + SD +G D + R + + DG
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMV-DG 53
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 45.2 bits (108), Expect = 6e-08
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDF 47
++++L+G VGKS+L + F G G +
Sbjct: 3 YKVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTY 38
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding,
methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A
{Homo sapiens}
Length = 214
Score = 45.1 bits (107), Expect = 1e-07
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARL 51
+++L+GD GK+SLL F DG F E PTV + L
Sbjct: 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL 75
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 44.5 bits (105), Expect = 2e-07
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFA 49
+ +L+L+GD GK+++L+ + E PTV ++ A
Sbjct: 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA 66
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 43.2 bits (102), Expect = 4e-07
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFA 49
+ + +++++GDS GK++LL F F E PTV ++ A
Sbjct: 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA 46
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 43.2 bits (102), Expect = 4e-07
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 13 LILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARL 51
L+++GD GK+ LL F+ +F E+ PTV ++ A +
Sbjct: 28 LVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI 66
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET:
GDP; 1.78A {Arabidopsis thaliana}
Length = 212
Score = 43.5 bits (103), Expect = 4e-07
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 13 LILIGDSTVGKSSLLKYFTDGKFAEISDPTV 43
+ +GD VGK+ +L +T KF PTV
Sbjct: 12 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTV 42
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP:
c.37.1.8
Length = 194
Score = 43.3 bits (102), Expect = 5e-07
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTV 43
+ +++GD VGK+ LL + + F E PTV
Sbjct: 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV 51
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 42.4 bits (100), Expect = 8e-07
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTV 43
+ +L+GD VGK+SL+ +T + PT
Sbjct: 20 GVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA 53
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 42.4 bits (100), Expect = 9e-07
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFA 49
+ + +GD VGK+ LL +T F PTV +F A
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA 47
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling
protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens}
PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B
1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A*
1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B*
...
Length = 201
Score = 42.4 bits (100), Expect = 9e-07
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 8 DYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTV 43
+ +L+++GD GK+ LL F+ +F E+ PTV
Sbjct: 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV 58
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold,
GTPase, GTP binding, protein binding, signali protein;
HET: GNP; 2.30A {Homo sapiens}
Length = 204
Score = 41.3 bits (97), Expect = 3e-06
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 11 FRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
+ +++GD VGK+ LL +T F PTV D ++ V +
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDG 75
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C
...
Length = 186
Score = 38.2 bits (89), Expect = 3e-05
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGVDFFARLVTMRD 56
+ +++GD VGK+ LL +T F PTV D ++ V +
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDG 50
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 29.8 bits (68), Expect = 0.031
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 10 QFRLILIG-DSTVGKSSLLKYFTDGKFAEISDPTVG 44
+ L L+G + GK++ + G+F E PTVG
Sbjct: 22 EMELTLVGLQYS-GKTTFVNVIASGQFNEDMIPTVG 56
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 29.6 bits (67), Expect = 0.032
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVG 44
Q R++++G GK+++L G+ PT+G
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG 62
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 29.5 bits (67), Expect = 0.038
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVG 44
+ R++++G GK+++L G+ PT+G
Sbjct: 7 EMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG 40
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 29.5 bits (67), Expect = 0.041
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVG 44
+ ++I++G GK+++L F+ + S PT+G
Sbjct: 21 EHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG 54
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding,
protein binding; HET: GDP; 3.17A {Saccharomyces
cerevisiae} SCOP: c.37.1.8
Length = 183
Score = 29.5 bits (67), Expect = 0.045
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVG 44
+ R++++G GK+++L G+ PT+G
Sbjct: 18 ELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIG 51
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding,
transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 187
Score = 29.1 bits (66), Expect = 0.051
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVG 44
+ ++I++G GK+++L F+ + S PT+G
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG 49
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 28.8 bits (65), Expect = 0.071
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVG 44
+ R++++G GK+S+L G PTVG
Sbjct: 22 KIRVLMLGLDNAGKTSILYRLHLGDVVTTV-PTVG 55
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 28.7 bits (65), Expect = 0.078
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 15 LIGDSTVGKSSLLKYFTDGKFAEIS 39
+G S VGKSSLL + K A +S
Sbjct: 28 FVGRSNVGKSSLLNALFNRKIAFVS 52
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 28.8 bits (64), Expect = 0.092
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 10 QFRLILIGDSTVGKSSLL 27
++++G VGKSS +
Sbjct: 39 SLTILVMGKGGVGKSSTV 56
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 28.4 bits (64), Expect = 0.100
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVG 44
+ RL+++G GK+++LK F IS PT+G
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTLG 51
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex
without magnesium, ARF family, RAS superfamily,
G-domain, signaling protein; HET: MES GDP; 1.70A {Mus
musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 28.3 bits (64), Expect = 0.10
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVG 44
+ R++L+G GK++LLK + I+ PT G
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQG 49
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 28.3 bits (63), Expect = 0.12
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 8 DYQFRLILIGDSTVGKSSLL 27
++++G VGKSS +
Sbjct: 34 MNSMTVLVLGKGGVGKSSTV 53
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 28.1 bits (62), Expect = 0.12
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 2 TVDPLFDYQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGV 45
+ + + + G++ GKSS + E GV
Sbjct: 61 ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV 104
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 28.0 bits (63), Expect = 0.14
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 6 LFDYQFRLILIG-DSTVGKSSLLKYFTDGKFAEISDPTVG 44
L+ +L+ +G D+ GK++LL D + + PT+
Sbjct: 21 LYKKTGKLVFLGLDNA-GKTTLLHMLKDDRLGQHV-PTLH 58
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family;
helicase, MCM homolog, DNA replication, ATP-binding,
DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Length = 506
Score = 27.9 bits (62), Expect = 0.14
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 9/42 (21%)
Query: 13 LILIGDSTVGKSSLLKY---------FTDGKFAEISDPTVGV 45
++L G V L + D + E++D T +
Sbjct: 242 VLLAGYPVVCSEILHHVLDHLAPRGVYVDLRRTELTDLTAVL 283
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 27.8 bits (62), Expect = 0.15
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVG 44
Q ++ +G GK+ L G++ + ++
Sbjct: 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSIT 40
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA
maturation, GTP-binding domain, maturation enzyme,
oxidoreductase; 2.99A {Thermotoga neapolitana}
Length = 423
Score = 28.1 bits (63), Expect = 0.16
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 15 LIGDSTVGKSSLLKYFTDGKFAEISD 40
+ G VGKSS + + +SD
Sbjct: 39 VAGRRNVGKSSFMNALVGQNVSIVSD 64
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 27.7 bits (61), Expect = 0.20
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 12 RLILIGDSTVGKSSLLKY-FTDGKFAEIS--DPTVGVDF 47
+L+L+G S GKSS+ F++ + T+ V+
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEH 43
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 27.6 bits (61), Expect = 0.22
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 12 RLILIGDSTVGKSSLLK-YFTDGKFAEIS--DPTVGVD 46
R++L+G GKSS+ K F E + T +
Sbjct: 22 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIY 59
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 27.5 bits (60), Expect = 0.23
Identities = 8/19 (42%), Positives = 16/19 (84%)
Query: 10 QFRLILIGDSTVGKSSLLK 28
+F L+++G+S +GKS+L+
Sbjct: 18 EFTLMVVGESGLGKSTLIN 36
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 27.2 bits (61), Expect = 0.24
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 10 QFRLILIG-DSTVGKSSLLKYFTDGKFAEISDPTVG 44
+L+ +G D+ GK++LL + + A + PT
Sbjct: 23 HGKLLFLGLDNA-GKTTLLHMLKNDRLATLQ-PTWH 56
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 27.2 bits (61), Expect = 0.26
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 14 ILIGDSTVGKSSLLKYFTDGKF----AEISD 40
I G S VGKSSLL + ++S+
Sbjct: 219 IFAGQSGVGKSSLLNALLGLQNEILTNDVSN 249
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 27.0 bits (59), Expect = 0.32
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKF----AEISDPTVGVD 46
F ++ +G++ +GKS+L+ + KF A + P V +
Sbjct: 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ 82
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 26.9 bits (60), Expect = 0.35
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 9/29 (31%)
Query: 15 LIGDSTVGKSSLLKY---------FTDGK 34
+IGD KS +L++ +T GK
Sbjct: 332 IIGDPGTAKSQMLQFISRVAPRAVYTTGK 360
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 26.2 bits (58), Expect = 0.53
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVG 44
YQ +I+ G GK+SLL T +
Sbjct: 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQE 81
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 26.4 bits (59), Expect = 0.59
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 14 ILIGDSTVGKSSLLKYFTDGKFA--EISD 40
IL G S VGKSS+L T + E+S+
Sbjct: 169 ILAGPSGVGKSSILSRLTGEELRTQEVSE 197
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 26.4 bits (58), Expect = 0.63
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 12 RLILIGDSTVGKSSLLKYFTDGKFAEISDPTVG 44
+ ++G + VGKS+ + + + + T
Sbjct: 164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTS 196
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 26.3 bits (57), Expect = 0.63
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 4 DPLFDYQFRLILIGDSTVGKSSLLKYFTDGKF 35
D FD + +++ G + GK+S ++Y + +
Sbjct: 59 DADFDGKPMVLVAGQYSTGKTSFIQYLLEQEV 90
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 26.3 bits (57), Expect = 0.64
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPT 42
++F L+++G+S +GKS+L+ P
Sbjct: 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPG 40
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 26.0 bits (58), Expect = 0.70
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 14 ILIGDSTVGKSSLLKYFTDG---KFAEISD 40
+ G S VGKSSLL G + +E+S+
Sbjct: 173 TMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 26.0 bits (58), Expect = 0.70
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 14 ILIGDSTVGKSSLLKYFTDG---KFAEISD 40
+ G S VGKSSLL + + EIS+
Sbjct: 177 VFAGQSGVGKSSLLNAISPELGLRTNEISE 206
>3okf_A 3-dehydroquinate synthase; structural genomics, center for
structural genomics of infec diseases, csgid, NAD,
lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar
eltor}
Length = 390
Score = 25.7 bits (57), Expect = 0.87
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 14 ILIGDSTVGKSSLLKYFTDGKFAEISDPTVG 44
I IG +LL K +++ TV
Sbjct: 44 ISIGAGLFANPALLSLSAKQKVVIVTNHTVA 74
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 25.7 bits (56), Expect = 0.99
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISD 40
Q R++L+G + GKS+ K
Sbjct: 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGT 59
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 25.1 bits (55), Expect = 1.4
Identities = 2/20 (10%), Positives = 8/20 (40%)
Query: 30 FTDGKFAEISDPTVGVDFFA 49
T +F ++ + ++
Sbjct: 21 ITPEEFRQLLQGDAILAVYS 40
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 25.4 bits (55), Expect = 1.4
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVGV 45
+ R+IL+G + GKS+ + E + +
Sbjct: 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTL 57
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 25.3 bits (54), Expect = 1.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 6 LFDYQFRLILIGDSTVGKSSLL 27
L FRL+++GD GKS+ L
Sbjct: 65 LQQGVFRLLVLGDMKRGKSTFL 86
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 24.9 bits (55), Expect = 1.5
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 28 KYFTDGKF-AEISDPTVGVDFFA 49
TD F AE S+ V DF+A
Sbjct: 4 VKATDQSFSAETSEGVVLADFWA 26
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 25.2 bits (54), Expect = 1.6
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 10 QFRLILIGDSTVGKSSLLKYFTDGKFAEISDPT 42
+F L+++G+S +GKS+L+ P
Sbjct: 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPG 63
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 24.8 bits (55), Expect = 1.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 15 LIGDSTVGKSSLL 27
L G S VGKSS +
Sbjct: 28 LAGRSNVGKSSFI 40
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 25.0 bits (55), Expect = 2.0
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 15 LIGDSTVGKSSLL 27
G S GKS+ +
Sbjct: 34 FAGRSNAGKSTAI 46
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 24.9 bits (55), Expect = 2.0
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 15 LIGDSTVGKSSLL 27
G S GKSS L
Sbjct: 31 FAGRSNAGKSSAL 43
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 24.7 bits (54), Expect = 2.4
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 13 LILIGDSTVGKSSLLKYFTDGK 34
+IL G VGKSS + +
Sbjct: 32 IILSGAPNVGKSSFMNIVSRAN 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 24.6 bits (53), Expect = 2.7
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 15 LIGDSTVGKSSLLKYFTDGKFAEISDP 41
+ G + GKS+L++ +G+
Sbjct: 466 ICGPNGCGKSTLMRAIANGQVDGFPTQ 492
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 24.3 bits (53), Expect = 2.9
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 9 YQFRLILIGDSTVGKSSLLKYFTDGKFAEISDPTVG 44
YQ +I+ G GK+SLL T +
Sbjct: 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQE 45
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 24.5 bits (54), Expect = 2.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 13 LILIGDSTVGKSSLLK 28
L+LIG S VG+S +
Sbjct: 22 LVLIGASGVGRSHIKN 37
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 24.3 bits (52), Expect = 3.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 13 LILIGDSTVGKSSLLKYFTDGKFA 36
+L+G VGKSSLL+ F + +
Sbjct: 34 TLLLGIRRVGKSSLLRAFLNERPG 57
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus
solfataricus} SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 24.3 bits (52), Expect = 3.6
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 13 LILIGDSTVGKSSLLKYFTDGK 34
+++G GKSS++K +
Sbjct: 33 TLVLGLRRTGKSSIIKIGINEL 54
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 24.0 bits (52), Expect = 3.8
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 3 VDPLFDYQFRLILIGDSTVGKSSLLKYF 30
L + + +IL G GK+ ++
Sbjct: 1260 FYDLLNSKRGIILCGPPGSGKTMIMNNA 1287
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 23.8 bits (51), Expect = 4.8
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 12 RLILIGDSTVGKSSLLKYFTDGKFAEISD-PTVG 44
+ ++G + VGKS+ + E + T
Sbjct: 162 DVYVVGCTNVGKSTFINRMIKEFSDETENVITTS 195
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 23.6 bits (52), Expect = 5.4
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 13 LILIGDSTVGKSSLLK 28
L+L+G VG+ +
Sbjct: 8 LVLLGAHGVGRRHIKN 23
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11,
replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus}
PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 23.5 bits (50), Expect = 6.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 14 ILIGDSTVGKSSLLK 28
++IG + GKSSLL
Sbjct: 27 LIIGQNGSGKSSLLD 41
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 23.4 bits (51), Expect = 6.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 15 LIGDSTVGKSSLL 27
G S VGKS+L+
Sbjct: 6 FAGRSNVGKSTLI 18
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 23.2 bits (50), Expect = 7.0
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 6 LFDYQFRLILIGDSTVGK 23
L Y +++LIG T G+
Sbjct: 312 LNPYM-KVVLIGTKTAGE 328
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 23.2 bits (51), Expect = 7.1
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 21 VGKSSLL 27
VGKSSLL
Sbjct: 235 VGKSSLL 241
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 23.3 bits (51), Expect = 7.2
Identities = 6/7 (85%), Positives = 7/7 (100%)
Query: 21 VGKSSLL 27
VGKS+LL
Sbjct: 254 VGKSTLL 260
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 23.3 bits (51), Expect = 7.6
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 21 VGKSSLL 27
GKS+LL
Sbjct: 244 AGKSTLL 250
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 23.0 bits (49), Expect = 8.7
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 17 GDSTVGKSSLLKYF---TDGKFAEISDPTVG-VDFFARLVTM 54
G +GKS L F + +F + DF R+V
Sbjct: 35 GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNN 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.333 0.149 0.450
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,011,756
Number of extensions: 45417
Number of successful extensions: 306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 142
Length of query: 64
Length of database: 6,701,793
Length adjustment: 35
Effective length of query: 29
Effective length of database: 5,724,558
Effective search space: 166012182
Effective search space used: 166012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.3 bits)