Query psy430
Match_columns 107
No_of_seqs 146 out of 1028
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 22:02:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 8E-33 1.7E-37 212.1 6.5 96 12-107 280-375 (375)
2 PTZ00466 actin-like protein; P 100.0 2.7E-32 6E-37 209.5 6.7 96 12-107 285-380 (380)
3 PTZ00281 actin; Provisional 100.0 3.5E-32 7.7E-37 208.4 5.3 96 12-107 281-376 (376)
4 PTZ00004 actin-2; Provisional 100.0 1.6E-31 3.5E-36 204.7 6.4 96 12-107 283-378 (378)
5 KOG0676|consensus 100.0 9.9E-32 2.1E-36 205.4 4.8 96 12-107 277-372 (372)
6 PF00022 Actin: Actin; InterP 100.0 1.7E-31 3.6E-36 203.7 4.5 96 12-107 297-393 (393)
7 smart00268 ACTIN Actin. ACTIN 100.0 1.1E-29 2.3E-34 193.2 7.3 95 13-107 279-373 (373)
8 PTZ00280 Actin-related protein 100.0 8E-30 1.7E-34 197.2 6.2 94 12-105 299-408 (414)
9 KOG0679|consensus 100.0 8.6E-29 1.9E-33 188.2 5.7 97 9-106 325-425 (426)
10 COG5277 Actin and related prot 99.9 5.2E-28 1.1E-32 189.1 6.4 97 11-107 348-444 (444)
11 KOG0680|consensus 99.9 1E-27 2.2E-32 179.6 6.9 94 14-107 306-399 (400)
12 cd00012 ACTIN Actin; An ubiqui 99.9 1.2E-26 2.6E-31 176.5 7.7 93 13-105 277-371 (371)
13 KOG0681|consensus 99.8 1.4E-20 3.1E-25 148.3 5.1 99 7-106 541-639 (645)
14 KOG0677|consensus 99.7 9.4E-19 2E-23 129.2 3.4 95 11-105 280-386 (389)
15 KOG0678|consensus 99.7 5.8E-19 1.3E-23 133.0 0.9 99 2-105 296-408 (415)
16 KOG0797|consensus 99.5 1.1E-14 2.3E-19 114.8 2.7 90 18-107 519-615 (618)
17 PRK13929 rod-share determining 98.7 4.2E-09 9.2E-14 79.8 1.2 60 11-78 263-323 (335)
18 TIGR00904 mreB cell shape dete 98.7 8.9E-09 1.9E-13 77.7 1.8 61 12-80 265-326 (333)
19 PF06723 MreB_Mbl: MreB/Mbl pr 98.6 9.5E-09 2.1E-13 78.2 1.4 60 13-80 260-320 (326)
20 PRK13930 rod shape-determining 98.6 1.4E-08 3E-13 76.3 1.8 61 12-80 266-327 (335)
21 PRK13927 rod shape-determining 98.6 2E-08 4.3E-13 75.6 1.2 61 12-80 262-323 (334)
22 PRK13928 rod shape-determining 98.4 1.1E-07 2.3E-12 72.0 1.6 61 12-80 261-322 (336)
23 TIGR02529 EutJ ethanolamine ut 97.6 3.3E-05 7.3E-10 56.3 2.1 43 27-77 196-238 (239)
24 PRK15080 ethanolamine utilizat 97.6 5.1E-05 1.1E-09 56.1 2.9 47 25-79 221-267 (267)
25 COG1077 MreB Actin-like ATPase 97.6 2.4E-05 5.2E-10 59.6 0.7 68 3-78 258-328 (342)
26 CHL00094 dnaK heat shock prote 96.5 0.0021 4.6E-08 52.6 3.2 48 25-80 328-375 (621)
27 TIGR02350 prok_dnaK chaperone 96.3 0.0028 6.1E-08 51.5 2.7 47 26-80 325-371 (595)
28 PRK09472 ftsA cell division pr 96.3 0.0057 1.2E-07 47.9 4.3 67 14-80 312-387 (420)
29 PRK00290 dnaK molecular chaper 96.3 0.0038 8.3E-08 51.2 3.2 47 26-80 327-373 (627)
30 PRK01433 hscA chaperone protei 96.0 0.0027 6E-08 52.0 1.0 47 26-80 309-355 (595)
31 TIGR01991 HscA Fe-S protein as 95.9 0.0072 1.6E-07 49.5 3.3 47 26-80 313-359 (599)
32 PTZ00400 DnaK-type molecular c 95.9 0.0085 1.8E-07 49.6 3.6 47 26-80 368-414 (663)
33 TIGR01174 ftsA cell division p 95.7 0.0041 9E-08 47.6 0.9 25 27-51 315-340 (371)
34 PRK05183 hscA chaperone protei 95.7 0.011 2.4E-07 48.6 3.4 47 26-80 329-375 (616)
35 TIGR02261 benz_CoA_red_D benzo 95.6 0.0094 2E-07 44.4 2.6 50 27-79 213-262 (262)
36 TIGR02259 benz_CoA_red_A benzo 95.5 0.012 2.6E-07 46.4 3.0 52 25-79 381-432 (432)
37 PTZ00186 heat shock 70 kDa pre 95.5 0.013 2.8E-07 48.7 3.2 48 25-80 353-400 (657)
38 TIGR03286 methan_mark_15 putat 95.4 0.0081 1.7E-07 47.3 1.6 48 25-80 355-402 (404)
39 PRK13410 molecular chaperone D 95.2 0.014 3.1E-07 48.4 2.6 48 25-80 328-375 (668)
40 PLN03184 chloroplast Hsp70; Pr 95.1 0.023 5E-07 47.2 3.4 47 26-80 366-412 (673)
41 TIGR03192 benz_CoA_bzdQ benzoy 95.0 0.014 3E-07 44.2 1.6 49 24-80 238-287 (293)
42 TIGR00241 CoA_E_activ CoA-subs 94.5 0.028 6.1E-07 40.9 2.4 42 28-77 206-247 (248)
43 COG1924 Activator of 2-hydroxy 94.5 0.024 5.2E-07 44.3 2.0 44 29-80 346-389 (396)
44 PRK13411 molecular chaperone D 94.4 0.027 5.8E-07 46.6 2.3 48 26-80 328-375 (653)
45 PRK11678 putative chaperone; P 94.4 0.029 6.3E-07 44.6 2.3 46 27-80 401-446 (450)
46 PTZ00009 heat shock 70 kDa pro 94.0 0.052 1.1E-06 44.9 3.1 48 26-80 333-380 (653)
47 PF11104 PilM_2: Type IV pilus 93.8 0.041 8.9E-07 41.8 2.1 26 25-50 274-299 (340)
48 PF00012 HSP70: Hsp70 protein; 93.8 0.044 9.6E-07 44.1 2.2 47 26-80 329-375 (602)
49 TIGR01175 pilM type IV pilus a 92.6 0.089 1.9E-06 39.7 2.3 26 25-50 282-307 (348)
50 PRK13317 pantothenate kinase; 92.5 0.15 3.3E-06 38.1 3.3 51 25-80 222-273 (277)
51 COG0849 ftsA Cell division ATP 91.5 0.23 5E-06 39.4 3.5 58 23-80 318-379 (418)
52 COG4820 EutJ Ethanolamine util 88.4 0.76 1.6E-05 33.7 3.8 24 26-49 227-250 (277)
53 PF01869 BcrAD_BadFG: BadF/Bad 86.8 0.066 1.4E-06 39.1 -2.5 48 29-79 224-271 (271)
54 PRK13917 plasmid segregation p 83.6 0.44 9.6E-06 36.5 0.6 45 25-80 291-335 (344)
55 TIGR03739 PRTRC_D PRTRC system 78.2 1.5 3.2E-05 33.1 1.8 44 26-78 274-317 (320)
56 PRK05082 N-acetylmannosamine k 62.9 8.5 0.00018 28.3 2.9 51 28-79 236-286 (291)
57 PF06406 StbA: StbA protein; 61.4 3 6.5E-05 31.5 0.3 42 26-74 273-314 (318)
58 COG4972 PilM Tfp pilus assembl 61.4 6.4 0.00014 30.6 2.0 25 26-50 288-312 (354)
59 COG0443 DnaK Molecular chapero 58.9 6.1 0.00013 32.6 1.7 48 25-80 309-356 (579)
60 KOG0100|consensus 58.7 7.6 0.00016 31.5 2.1 31 19-49 356-386 (663)
61 PF03727 Hexokinase_2: Hexokin 56.0 14 0.0003 26.9 3.0 42 36-80 197-239 (243)
62 PRK13310 N-acetyl-D-glucosamin 55.9 12 0.00027 27.5 2.8 52 28-79 248-300 (303)
63 PRK09557 fructokinase; Reviewe 54.7 14 0.00031 27.2 2.9 51 28-78 247-298 (301)
64 KOG2495|consensus 53.5 21 0.00046 28.9 3.8 48 8-55 201-251 (491)
65 KOG3445|consensus 53.0 14 0.00031 25.1 2.4 31 33-65 34-64 (145)
66 KOG2960|consensus 52.6 9.1 0.0002 28.6 1.5 51 26-81 76-127 (328)
67 PF09693 Phage_XkdX: Phage unc 52.1 8.3 0.00018 20.4 0.9 12 86-97 24-35 (40)
68 PRK09698 D-allose kinase; Prov 52.0 23 0.0005 26.0 3.6 52 28-79 239-294 (302)
69 PF14824 Sirohm_synth_M: Siroh 50.2 13 0.00029 18.6 1.5 22 29-52 8-29 (30)
70 TIGR01669 phage_XkdX phage unc 48.9 10 0.00022 20.7 1.0 15 83-97 25-40 (45)
71 PF03702 UPF0075: Uncharacteri 48.1 7.8 0.00017 30.2 0.6 26 26-51 285-310 (364)
72 PF02782 FGGY_C: FGGY family o 47.7 7.6 0.00016 26.5 0.5 47 25-80 149-195 (198)
73 PRK09585 anmK anhydro-N-acetyl 46.6 12 0.00026 29.3 1.5 23 27-49 288-310 (365)
74 COG3967 DltE Short-chain dehyd 44.8 24 0.00051 26.1 2.6 21 28-51 7-27 (245)
75 PF07318 DUF1464: Protein of u 43.7 32 0.0007 26.8 3.4 48 29-80 264-314 (343)
76 KOG4058|consensus 41.6 26 0.00057 24.6 2.4 36 26-65 139-174 (199)
77 PRK06947 glucose-1-dehydrogena 40.7 33 0.00072 23.9 2.9 23 26-51 2-24 (248)
78 TIGR03590 PseG pseudaminic aci 39.6 61 0.0013 23.8 4.3 37 27-64 171-207 (279)
79 PTZ00340 O-sialoglycoprotein e 39.1 9.8 0.00021 29.5 -0.1 50 26-80 264-319 (345)
80 PRK08099 bifunctional DNA-bind 37.9 24 0.00052 27.7 2.0 21 17-37 210-230 (399)
81 PRK03011 butyrate kinase; Prov 36.2 37 0.0008 26.4 2.7 45 27-75 297-341 (358)
82 PRK15027 xylulokinase; Provisi 36.2 31 0.00068 27.4 2.4 47 26-80 387-433 (484)
83 TIGR00744 ROK_glcA_fam ROK fam 35.0 34 0.00075 25.2 2.3 52 28-79 254-308 (318)
84 PF12401 DUF3662: Protein of u 34.6 4.6 9.9E-05 26.3 -2.2 59 41-100 29-97 (116)
85 TIGR01311 glycerol_kin glycero 34.4 36 0.00079 27.1 2.5 46 26-80 400-445 (493)
86 PRK14474 F0F1 ATP synthase sub 34.3 1.5E+02 0.0032 21.8 5.5 61 3-65 148-215 (250)
87 PRK05650 short chain dehydroge 33.4 47 0.001 23.6 2.8 21 28-51 2-22 (270)
88 PRK06719 precorrin-2 dehydroge 32.7 28 0.0006 23.6 1.4 24 31-56 124-147 (157)
89 PF00106 adh_short: short chai 32.0 42 0.00091 21.7 2.2 23 27-52 1-23 (167)
90 PRK07024 short chain dehydroge 32.0 46 0.001 23.5 2.5 22 27-51 3-24 (257)
91 PRK06718 precorrin-2 dehydroge 31.6 35 0.00076 24.1 1.8 24 32-57 125-148 (202)
92 PRK14878 UGMP family protein; 31.2 15 0.00033 27.9 -0.1 26 26-51 242-267 (323)
93 TIGR00555 panK_eukar pantothen 31.1 54 0.0012 24.7 2.8 49 23-76 228-277 (279)
94 PRK00047 glpK glycerol kinase; 30.9 49 0.0011 26.4 2.7 46 26-80 404-449 (498)
95 PRK07825 short chain dehydroge 30.7 52 0.0011 23.4 2.6 22 27-51 6-27 (273)
96 PRK06924 short chain dehydroge 30.6 53 0.0012 22.9 2.6 23 27-52 2-24 (251)
97 TIGR01181 dTDP_gluc_dehyt dTDP 30.6 56 0.0012 23.4 2.8 22 28-52 1-22 (317)
98 TIGR01312 XylB D-xylulose kina 30.5 42 0.00092 26.3 2.3 46 26-80 391-436 (481)
99 TIGR02707 butyr_kinase butyrat 30.5 42 0.0009 26.0 2.2 28 27-54 295-322 (351)
100 PRK05693 short chain dehydroge 30.3 56 0.0012 23.3 2.7 22 27-51 2-23 (274)
101 COG4962 CpaF Flp pilus assembl 30.1 69 0.0015 25.2 3.2 28 27-57 174-201 (355)
102 KOG1201|consensus 29.9 57 0.0012 25.0 2.8 31 21-54 32-63 (300)
103 KOG0101|consensus 29.6 40 0.00086 28.4 2.0 24 26-49 335-358 (620)
104 cd01403 Cyt_c_Oxidase_VIIb Cyt 29.3 33 0.00072 19.2 1.1 14 25-38 8-21 (51)
105 PRK06953 short chain dehydroge 29.0 65 0.0014 22.1 2.8 22 27-51 2-23 (222)
106 PRK06101 short chain dehydroge 29.0 55 0.0012 22.9 2.5 22 27-51 2-23 (240)
107 COG0533 QRI7 Metal-dependent p 28.9 21 0.00046 27.8 0.3 59 17-80 253-317 (342)
108 PRK07578 short chain dehydroge 28.8 59 0.0013 22.0 2.5 22 28-52 2-23 (199)
109 PRK09291 short chain dehydroge 28.8 63 0.0014 22.5 2.8 22 27-51 3-24 (257)
110 PLN02596 hexokinase-like 28.4 67 0.0014 26.2 3.1 43 37-82 440-484 (490)
111 PF12242 Eno-Rase_NADH_b: NAD( 28.4 22 0.00047 21.9 0.2 23 26-49 39-61 (78)
112 PRK05854 short chain dehydroge 28.1 79 0.0017 23.4 3.3 22 27-51 15-36 (313)
113 COG1028 FabG Dehydrogenases wi 27.8 58 0.0013 22.7 2.4 21 27-50 6-26 (251)
114 PRK08251 short chain dehydroge 27.7 64 0.0014 22.4 2.6 22 27-51 3-24 (248)
115 PRK08267 short chain dehydroge 27.6 67 0.0015 22.6 2.7 22 27-51 2-23 (260)
116 PRK12742 oxidoreductase; Provi 27.4 70 0.0015 22.0 2.8 22 27-51 7-28 (237)
117 PRK12937 short chain dehydroge 27.3 67 0.0015 22.2 2.6 22 27-51 6-27 (245)
118 PRK06179 short chain dehydroge 27.1 65 0.0014 22.8 2.6 23 27-52 5-27 (270)
119 PF14781 BBS2_N: Ciliary BBSom 27.1 19 0.00042 24.4 -0.2 17 26-42 107-123 (136)
120 PRK12825 fabG 3-ketoacyl-(acyl 26.5 69 0.0015 21.9 2.6 22 27-51 7-28 (249)
121 KOG0683|consensus 26.5 45 0.00098 26.3 1.7 75 18-103 184-278 (380)
122 PRK07806 short chain dehydroge 26.2 79 0.0017 21.9 2.9 22 27-51 7-28 (248)
123 PRK06194 hypothetical protein; 26.1 66 0.0014 23.0 2.5 22 27-51 7-28 (287)
124 PRK08264 short chain dehydroge 25.9 74 0.0016 21.9 2.6 23 27-52 7-29 (238)
125 COG2871 NqrF Na+-transporting 25.7 1E+02 0.0022 24.0 3.5 38 28-76 277-314 (410)
126 PRK08628 short chain dehydroge 25.4 79 0.0017 22.2 2.7 22 27-51 8-29 (258)
127 TIGR01470 cysG_Nterm siroheme 25.4 56 0.0012 23.1 1.9 25 31-57 124-148 (205)
128 PRK06482 short chain dehydroge 25.3 78 0.0017 22.5 2.8 22 27-51 3-24 (276)
129 PRK06182 short chain dehydroge 25.0 80 0.0017 22.5 2.7 22 27-51 4-25 (273)
130 TIGR02628 fuculo_kin_coli L-fu 25.0 59 0.0013 25.7 2.2 47 26-81 394-440 (465)
131 PRK09009 C factor cell-cell si 25.0 79 0.0017 21.8 2.7 22 28-52 2-23 (235)
132 PTZ00107 hexokinase; Provision 24.8 89 0.0019 25.3 3.2 50 29-81 408-459 (464)
133 TIGR03722 arch_KAE1 universal 24.6 24 0.00052 26.7 -0.1 26 26-51 243-268 (322)
134 PRK05653 fabG 3-ketoacyl-(acyl 24.4 80 0.0017 21.6 2.6 22 27-51 6-27 (246)
135 PRK05876 short chain dehydroge 24.4 79 0.0017 22.8 2.6 22 27-51 7-28 (275)
136 PRK12827 short chain dehydroge 24.3 86 0.0019 21.6 2.7 22 27-51 7-28 (249)
137 KOG1369|consensus 24.2 1.1E+02 0.0024 24.9 3.6 51 29-82 415-467 (474)
138 TIGR03281 methan_mark_12 putat 24.2 90 0.0019 24.2 2.9 43 28-80 265-310 (326)
139 PLN02914 hexokinase 24.0 78 0.0017 25.8 2.7 50 29-81 434-486 (490)
140 PRK04123 ribulokinase; Provisi 24.0 67 0.0015 25.9 2.4 46 26-80 439-485 (548)
141 TIGR01832 kduD 2-deoxy-D-gluco 24.0 84 0.0018 21.8 2.7 22 27-51 6-27 (248)
142 PRK06180 short chain dehydroge 24.0 82 0.0018 22.6 2.6 22 27-51 5-26 (277)
143 COG3797 Uncharacterized protei 23.8 1.3E+02 0.0028 21.3 3.5 28 27-55 43-70 (178)
144 PRK06483 dihydromonapterin red 23.8 93 0.002 21.5 2.8 22 27-51 3-24 (236)
145 KOG0104|consensus 23.8 78 0.0017 27.6 2.7 24 27-50 366-389 (902)
146 PF10784 Plasmid_stab_B: Plasm 23.4 14 0.00031 22.3 -1.2 28 7-34 15-42 (72)
147 COG0528 PyrH Uridylate kinase 23.4 45 0.00097 24.7 1.1 25 27-51 125-149 (238)
148 PF08260 Kinin: Insect kinin p 23.4 35 0.00075 11.9 0.3 6 67-72 2-7 (8)
149 PRK12936 3-ketoacyl-(acyl-carr 23.4 90 0.002 21.5 2.7 22 27-51 7-28 (245)
150 PRK12429 3-hydroxybutyrate deh 23.3 89 0.0019 21.7 2.7 22 27-51 5-26 (258)
151 PRK07904 short chain dehydroge 23.3 82 0.0018 22.4 2.5 23 27-52 9-31 (253)
152 PRK07577 short chain dehydroge 23.2 95 0.0021 21.3 2.8 22 27-51 4-25 (234)
153 PRK07023 short chain dehydroge 23.2 88 0.0019 21.7 2.6 21 28-51 3-23 (243)
154 COG1940 NagC Transcriptional r 23.0 95 0.0021 22.9 2.9 53 28-80 250-306 (314)
155 TIGR01315 5C_CHO_kinase FGGY-f 22.8 61 0.0013 26.3 1.9 46 26-80 444-489 (541)
156 PRK12935 acetoacetyl-CoA reduc 22.7 90 0.0019 21.6 2.6 22 27-51 7-28 (247)
157 PRK07102 short chain dehydroge 22.4 90 0.0019 21.7 2.5 22 27-51 2-23 (243)
158 PRK12939 short chain dehydroge 22.4 96 0.0021 21.4 2.7 22 27-51 8-29 (250)
159 PRK07453 protochlorophyllide o 22.1 94 0.002 22.9 2.7 22 27-51 7-28 (322)
160 PRK07067 sorbitol dehydrogenas 22.1 98 0.0021 21.7 2.7 22 27-51 7-28 (257)
161 KOG1579|consensus 22.1 2.1E+02 0.0045 22.2 4.5 68 28-102 222-294 (317)
162 PLN02295 glycerol kinase 22.0 69 0.0015 25.7 2.1 46 26-80 413-458 (512)
163 PRK05866 short chain dehydroge 21.9 92 0.002 22.8 2.6 22 27-51 41-62 (293)
164 COG1648 CysG Siroheme synthase 21.9 89 0.0019 22.4 2.4 26 30-57 126-151 (210)
165 PLN02362 hexokinase 21.9 1.1E+02 0.0024 25.1 3.2 50 29-81 445-497 (509)
166 COG3426 Butyrate kinase [Energ 21.8 60 0.0013 25.1 1.6 28 27-54 298-325 (358)
167 PTZ00335 tubulin alpha chain; 21.7 1.2E+02 0.0027 24.2 3.4 28 32-61 142-169 (448)
168 PRK05565 fabG 3-ketoacyl-(acyl 21.7 96 0.0021 21.3 2.6 22 27-51 6-27 (247)
169 PLN02214 cinnamoyl-CoA reducta 21.6 91 0.002 23.4 2.6 30 19-51 3-32 (342)
170 PRK07035 short chain dehydroge 21.6 97 0.0021 21.6 2.6 22 27-51 9-30 (252)
171 PF01106 NifU: NifU-like domai 21.6 1.8E+02 0.0039 16.8 4.3 30 29-58 31-64 (68)
172 PRK07478 short chain dehydroge 21.5 1.1E+02 0.0023 21.5 2.8 22 27-51 7-28 (254)
173 PRK07856 short chain dehydroge 21.4 98 0.0021 21.7 2.6 22 27-51 7-28 (252)
174 PRK05993 short chain dehydroge 21.4 95 0.0021 22.2 2.6 22 27-51 5-26 (277)
175 TIGR00329 gcp_kae1 metallohydr 21.4 31 0.00068 25.9 -0.0 26 26-51 259-284 (305)
176 PRK07523 gluconate 5-dehydroge 21.4 1E+02 0.0022 21.6 2.6 22 27-51 11-32 (255)
177 PRK10217 dTDP-glucose 4,6-dehy 21.4 92 0.002 23.1 2.5 23 27-52 2-24 (355)
178 PRK07890 short chain dehydroge 21.2 1.1E+02 0.0024 21.3 2.8 22 27-51 6-27 (258)
179 PRK12367 short chain dehydroge 21.1 1.4E+02 0.003 21.4 3.3 22 27-51 15-36 (245)
180 PRK08219 short chain dehydroge 21.0 1E+02 0.0022 20.9 2.6 23 27-52 4-26 (227)
181 PRK07775 short chain dehydroge 20.9 1E+02 0.0023 22.0 2.7 22 27-51 11-32 (274)
182 PRK07832 short chain dehydroge 20.9 1E+02 0.0022 21.9 2.6 21 28-51 2-22 (272)
183 PRK09072 short chain dehydroge 20.9 1.1E+02 0.0023 21.6 2.7 22 27-51 6-27 (263)
184 COG1251 NirB NAD(P)H-nitrite r 20.8 1.9E+02 0.0042 25.1 4.5 69 28-100 5-75 (793)
185 PRK05867 short chain dehydroge 20.7 1.1E+02 0.0023 21.5 2.6 22 27-51 10-31 (253)
186 PRK09417 mogA molybdenum cofac 20.7 1E+02 0.0022 21.8 2.5 9 29-37 70-78 (193)
187 PLN00222 tubulin gamma chain; 20.6 1.4E+02 0.003 24.0 3.5 23 39-61 147-169 (454)
188 PRK06057 short chain dehydroge 20.6 1.1E+02 0.0023 21.5 2.7 22 27-51 8-29 (255)
189 PLN02405 hexokinase 20.6 1.1E+02 0.0024 25.0 3.0 50 29-81 436-488 (497)
190 PF10087 DUF2325: Uncharacteri 20.6 71 0.0015 19.6 1.5 8 28-35 1-8 (97)
191 PRK05872 short chain dehydroge 20.5 1.1E+02 0.0023 22.4 2.7 22 27-51 10-31 (296)
192 PRK08945 putative oxoacyl-(acy 20.5 1.1E+02 0.0024 21.3 2.7 22 27-51 13-34 (247)
193 PRK06197 short chain dehydroge 20.5 1.1E+02 0.0023 22.3 2.7 22 27-51 17-38 (306)
194 PRK05786 fabG 3-ketoacyl-(acyl 20.5 1.1E+02 0.0023 21.0 2.6 22 27-51 6-27 (238)
195 PRK08416 7-alpha-hydroxysteroi 20.4 1.1E+02 0.0023 21.7 2.6 22 27-51 9-30 (260)
196 PRK05557 fabG 3-ketoacyl-(acyl 20.4 1.1E+02 0.0024 20.9 2.6 22 27-51 6-27 (248)
197 PRK08177 short chain dehydroge 20.3 1.1E+02 0.0025 20.9 2.7 22 27-51 2-23 (225)
198 PRK08642 fabG 3-ketoacyl-(acyl 20.3 1.2E+02 0.0025 21.0 2.8 22 27-51 6-27 (253)
199 PRK06196 oxidoreductase; Provi 20.2 1.1E+02 0.0024 22.4 2.7 22 27-51 27-48 (315)
200 PRK08703 short chain dehydroge 20.2 1.2E+02 0.0026 21.0 2.8 22 27-51 7-28 (239)
201 PTZ00294 glycerol kinase-like 20.1 79 0.0017 25.3 2.0 46 26-80 407-452 (504)
No 1
>PTZ00452 actin; Provisional
Probab=99.97 E-value=8e-33 Score=212.12 Aligned_cols=96 Identities=54% Similarity=1.015 Sum_probs=92.6
Q ss_pred hcCCCCChhhhhccccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhccccccccccccH
Q psy430 12 SGSHPARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 91 (107)
Q Consensus 12 ~~i~~~~~d~r~~l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~l~~~~~~~Itr 91 (107)
.+|.+||+|+|+.|++||+|+||+|++|||.+||++||+.++|+..+++|..++++.+++|+|||++|+++.|+++||||
T Consensus 280 ~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk 359 (375)
T PTZ00452 280 SSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKR 359 (375)
T ss_pred HHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcCccchhhhEeEH
Confidence 45778999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHhhcCchhhhhhcC
Q psy430 92 QEYDESGPSIVHRKCF 107 (107)
Q Consensus 92 ~eY~e~G~~~~~~k~~ 107 (107)
+||+|+|+++++||||
T Consensus 360 ~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 360 QEYDEQGPSIVHRKCF 375 (375)
T ss_pred HHHhccCcceeeeecC
Confidence 9999999999999997
No 2
>PTZ00466 actin-like protein; Provisional
Probab=99.97 E-value=2.7e-32 Score=209.52 Aligned_cols=96 Identities=52% Similarity=0.899 Sum_probs=92.6
Q ss_pred hcCCCCChhhhhccccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhccccccccccccH
Q psy430 12 SGSHPARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 91 (107)
Q Consensus 12 ~~i~~~~~d~r~~l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~l~~~~~~~Itr 91 (107)
.+|++||.|+|+.|++||+|+||+|++|||.+||++||+.+.|...+++|..++++.+++|+|||++|+++.|++.||||
T Consensus 285 ~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~itk 364 (380)
T PTZ00466 285 TSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILASLATFKKIWISK 364 (380)
T ss_pred HHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcCccchhhhEeEH
Confidence 35778999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHhhcCchhhhhhcC
Q psy430 92 QEYDESGPSIVHRKCF 107 (107)
Q Consensus 92 ~eY~e~G~~~~~~k~~ 107 (107)
+||+|+|+++++||||
T Consensus 365 ~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 365 QEFDEYGSVILHRKTF 380 (380)
T ss_pred HHHhhhCcHhheeecC
Confidence 9999999999999997
No 3
>PTZ00281 actin; Provisional
Probab=99.97 E-value=3.5e-32 Score=208.36 Aligned_cols=96 Identities=79% Similarity=1.219 Sum_probs=92.4
Q ss_pred hcCCCCChhhhhccccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhccccccccccccH
Q psy430 12 SGSHPARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 91 (107)
Q Consensus 12 ~~i~~~~~d~r~~l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~l~~~~~~~Itr 91 (107)
.+|.+||+|+|+.|++||||+||+|++|||.+||++||+.++|..++++|..++++.+++|+||+++|+++.|++.||||
T Consensus 281 ~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vtk 360 (376)
T PTZ00281 281 NSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 360 (376)
T ss_pred HHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCcccHhhceeeH
Confidence 35778999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHhhcCchhhhhhcC
Q psy430 92 QEYDESGPSIVHRKCF 107 (107)
Q Consensus 92 ~eY~e~G~~~~~~k~~ 107 (107)
+||+|+|+++++||||
T Consensus 361 ~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 361 EEYDESGPSIVHRKCF 376 (376)
T ss_pred HHHhhhCchheeeecC
Confidence 9999999999999997
No 4
>PTZ00004 actin-2; Provisional
Probab=99.97 E-value=1.6e-31 Score=204.72 Aligned_cols=96 Identities=67% Similarity=1.146 Sum_probs=92.3
Q ss_pred hcCCCCChhhhhccccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhccccccccccccH
Q psy430 12 SGSHPARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 91 (107)
Q Consensus 12 ~~i~~~~~d~r~~l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~l~~~~~~~Itr 91 (107)
.+|.+||+|+|+.|++||+|+||+|++|||.+||++||+.++|...+++|..++++.+++|+||+++|+++.|++.||||
T Consensus 283 ~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~vtk 362 (378)
T PTZ00004 283 QSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTK 362 (378)
T ss_pred HHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccCccchhhhEeEH
Confidence 34778999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHhhcCchhhhhhcC
Q psy430 92 QEYDESGPSIVHRKCF 107 (107)
Q Consensus 92 ~eY~e~G~~~~~~k~~ 107 (107)
+||+|+|+++++||||
T Consensus 363 ~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 363 EEYDESGPSIVHRKCF 378 (378)
T ss_pred HHHhhhCcceEEeecC
Confidence 9999999999999997
No 5
>KOG0676|consensus
Probab=99.97 E-value=9.9e-32 Score=205.45 Aligned_cols=96 Identities=68% Similarity=1.170 Sum_probs=93.4
Q ss_pred hcCCCCChhhhhccccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhccccccccccccH
Q psy430 12 SGSHPARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 91 (107)
Q Consensus 12 ~~i~~~~~d~r~~l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~l~~~~~~~Itr 91 (107)
.+|++||.|+|++||+||+|+||++++|||.+||++||+.+.|...+++|+.+|++.+++|+||||+|+++.|+++||||
T Consensus 277 ~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlaslstfq~~witk 356 (372)
T KOG0676|consen 277 NSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILASLSTFQQMWITK 356 (372)
T ss_pred HHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCcccccceecCceeEeecchHhhccccH
Confidence 45888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCchhhhhhcC
Q psy430 92 QEYDESGPSIVHRKCF 107 (107)
Q Consensus 92 ~eY~e~G~~~~~~k~~ 107 (107)
+||+|.|+.++|||||
T Consensus 357 ~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 357 EEYEEHGPSIIHRKCF 372 (372)
T ss_pred HHHhhhCCceeeeccC
Confidence 9999999999999998
No 6
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.97 E-value=1.7e-31 Score=203.74 Aligned_cols=96 Identities=49% Similarity=1.025 Sum_probs=90.0
Q ss_pred hcCCCCChhhhhccccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCC-CCccceeehhhhhcccccccccccc
Q psy430 12 SGSHPARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP-ERKYSVWIGGSILASLSTFQQMWIS 90 (107)
Q Consensus 12 ~~i~~~~~d~r~~l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~-~~~~~~W~Ggsi~a~l~~~~~~~It 90 (107)
.++.+||.|+|+.|++||+|+||+|++|||.+||++||..+.|...+++|..++ +|.+++|+||+++|+++.|+++|||
T Consensus 297 ~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~it 376 (393)
T PF00022_consen 297 DSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWIT 376 (393)
T ss_dssp HHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEE
T ss_pred hhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccccccceeee
Confidence 357789999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHhhcCchhhhhhcC
Q psy430 91 KQEYDESGPSIVHRKCF 107 (107)
Q Consensus 91 r~eY~e~G~~~~~~k~~ 107 (107)
|+||+|+|+++++||||
T Consensus 377 r~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 377 REEYEEYGPSIIHRKCF 393 (393)
T ss_dssp HHHHHHHGGGGHHHHT-
T ss_pred HHHHhCcCcceeeecCC
Confidence 99999999999999997
No 7
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.96 E-value=1.1e-29 Score=193.21 Aligned_cols=95 Identities=56% Similarity=1.052 Sum_probs=91.5
Q ss_pred cCCCCChhhhhccccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhccccccccccccHH
Q psy430 13 GSHPARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 92 (107)
Q Consensus 13 ~i~~~~~d~r~~l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~l~~~~~~~Itr~ 92 (107)
++.+||+|+|++|++||+|+||+|++|||.+||++||+.+.|...++++..++++.+++|.||+++|+++.|.+.||||+
T Consensus 279 ~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~~~f~~~~vtk~ 358 (373)
T smart00268 279 SIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKK 358 (373)
T ss_pred HHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCccchhhhEEEHH
Confidence 46779999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHhhcCchhhhhhcC
Q psy430 93 EYDESGPSIVHRKCF 107 (107)
Q Consensus 93 eY~e~G~~~~~~k~~ 107 (107)
||+|+|+++++||||
T Consensus 359 eY~E~G~~i~~~k~~ 373 (373)
T smart00268 359 EYEEHGSQIVERKCF 373 (373)
T ss_pred HHhhhCcceEEeecC
Confidence 999999999999998
No 8
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.96 E-value=8e-30 Score=197.20 Aligned_cols=94 Identities=33% Similarity=0.700 Sum_probs=87.6
Q ss_pred hcCCCCChhhhhccccCeEEecCCCCCcChHHHHHHHHHhhC----------------CCCceeEEeCCCCCccceeehh
Q psy430 12 SGSHPARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALA----------------PSTMKIKIIAPPERKYSVWIGG 75 (107)
Q Consensus 12 ~~i~~~~~d~r~~l~~nIvltGG~s~~~G~~~Rl~~eL~~~~----------------p~~~~v~v~~~~~~~~~~W~Gg 75 (107)
.+|++||+|+|++||+||+|+||+|++|||.+||++||+.++ |..++++|..++++.+++|+||
T Consensus 299 ~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Gg 378 (414)
T PTZ00280 299 DAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGG 378 (414)
T ss_pred HHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEECh
Confidence 467889999999999999999999999999999999999986 4456789998888899999999
Q ss_pred hhhccccccccccccHHHHhhcCchhhhhh
Q psy430 76 SILASLSTFQQMWISKQEYDESGPSIVHRK 105 (107)
Q Consensus 76 si~a~l~~~~~~~Itr~eY~e~G~~~~~~k 105 (107)
|++|+++.|+++||||+||+|+|+++++++
T Consensus 379 Silas~~~f~~~~itk~eY~E~G~~i~~~~ 408 (414)
T PTZ00280 379 SMLASSPEFEKVCHTKAEYDEYGPSICRYN 408 (414)
T ss_pred hhcccCcchhhheEEHHHHhccChHheeec
Confidence 999999999999999999999999999886
No 9
>KOG0679|consensus
Probab=99.95 E-value=8.6e-29 Score=188.21 Aligned_cols=97 Identities=45% Similarity=0.879 Sum_probs=90.9
Q ss_pred HhhhcCCCCChhhhhccccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCC---CCccceeehhhhhccccccc
Q psy430 9 IEYSGSHPARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQ 85 (107)
Q Consensus 9 i~~~~i~~~~~d~r~~l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~---~~~~~~W~Ggsi~a~l~~~~ 85 (107)
+.+++|..||+|+|..|+.|||||||+|+++||.+||.+||..++|.. +++++... ++++++|+||+|+|+|+.|+
T Consensus 325 lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASLgtFq 403 (426)
T KOG0679|consen 325 LVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASLGTFQ 403 (426)
T ss_pred HHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhccccHH
Confidence 457889999999999999999999999999999999999999999988 99988764 78999999999999999999
Q ss_pred cccccHHHHhhcCc-hhhhhhc
Q psy430 86 QMWISKQEYDESGP-SIVHRKC 106 (107)
Q Consensus 86 ~~~Itr~eY~e~G~-~~~~~k~ 106 (107)
.+||+|+||+|.|. ..+.+||
T Consensus 404 q~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 404 QLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred HHhhhHHHHHHhhhHHHHhhcC
Confidence 99999999999999 7777777
No 10
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.95 E-value=5.2e-28 Score=189.07 Aligned_cols=97 Identities=47% Similarity=0.892 Sum_probs=93.3
Q ss_pred hhcCCCCChhhhhccccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcccccccccccc
Q psy430 11 YSGSHPARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 90 (107)
Q Consensus 11 ~~~i~~~~~d~r~~l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~l~~~~~~~It 90 (107)
+++|+.||+|.|+.|++||+||||+|++|||.+||++||+.+.|..+.+.|..+++|.+.+|+||+++|++..|+..|||
T Consensus 348 ~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~~~~~~~~~it 427 (444)
T COG5277 348 YQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILASLETFQQLWIT 427 (444)
T ss_pred HHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhccccchhheEee
Confidence 44677799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCchhhhhhcC
Q psy430 91 KQEYDESGPSIVHRKCF 107 (107)
Q Consensus 91 r~eY~e~G~~~~~~k~~ 107 (107)
|+||+|+|+++++++||
T Consensus 428 k~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 428 KEEYEEHGPDILQEKRF 444 (444)
T ss_pred HHHhhhhhhHHHhhccC
Confidence 99999999999999986
No 11
>KOG0680|consensus
Probab=99.94 E-value=1e-27 Score=179.56 Aligned_cols=94 Identities=26% Similarity=0.549 Sum_probs=91.6
Q ss_pred CCCCChhhhhccccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhccccccccccccHHH
Q psy430 14 SHPARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 93 (107)
Q Consensus 14 i~~~~~d~r~~l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~l~~~~~~~Itr~e 93 (107)
+.+||+++|+.|++||+++||++++|||.+||.+||++++|.++.++|..+.||...+|.||+.++++++|+..||||+|
T Consensus 306 l~~~Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~itR~d 385 (400)
T KOG0680|consen 306 LSMLPEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFAWEGGSEFAKTDSFEKAVITRED 385 (400)
T ss_pred HHhCHHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceeeehhccccccCcchhcceecHhh
Confidence 67799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCchhhhhhcC
Q psy430 94 YDESGPSIVHRKCF 107 (107)
Q Consensus 94 Y~e~G~~~~~~k~~ 107 (107)
|+|+|++++.+|+|
T Consensus 386 y~E~G~~~~~~~~~ 399 (400)
T KOG0680|consen 386 YEEHGPSWCTKKRF 399 (400)
T ss_pred HhhcCchhhhhhcc
Confidence 99999999999986
No 12
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.93 E-value=1.2e-26 Score=176.52 Aligned_cols=93 Identities=60% Similarity=1.079 Sum_probs=87.3
Q ss_pred cCCCCChhhhhccccCeEEecCCCCCcChHHHHHHHHHhhCCC--CceeEEeCCCCCccceeehhhhhcccccccccccc
Q psy430 13 GSHPARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAPS--TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 90 (107)
Q Consensus 13 ~i~~~~~d~r~~l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~--~~~v~v~~~~~~~~~~W~Ggsi~a~l~~~~~~~It 90 (107)
++.+||+|.|+.+++||+|+||+|++|||.+||++||..+.|. ...+++...++|.+++|+||+++|+++.|++.|||
T Consensus 277 ~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~it 356 (371)
T cd00012 277 SINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASLSTFQQLWIT 356 (371)
T ss_pred HHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCchhhhheEee
Confidence 3667999999999999999999999999999999999999997 56678888889999999999999999999999999
Q ss_pred HHHHhhcCchhhhhh
Q psy430 91 KQEYDESGPSIVHRK 105 (107)
Q Consensus 91 r~eY~e~G~~~~~~k 105 (107)
|+||+|+|+++++||
T Consensus 357 k~eY~E~G~~~~~~k 371 (371)
T cd00012 357 KEEYEEHGPSIVHRK 371 (371)
T ss_pred HHHHhhhCchhEecC
Confidence 999999999999886
No 13
>KOG0681|consensus
Probab=99.81 E-value=1.4e-20 Score=148.31 Aligned_cols=99 Identities=22% Similarity=0.472 Sum_probs=91.7
Q ss_pred HHHhhhcCCCCChhhhhccccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcccccccc
Q psy430 7 SLIEYSGSHPARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQ 86 (107)
Q Consensus 7 ~~i~~~~i~~~~~d~r~~l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~l~~~~~ 86 (107)
+++.+ ++.+.|.|.+..|.+||+||||+|.+||+++||++||..+.|....++|+.+.||...||+||+.+|....|..
T Consensus 541 Ei~~~-il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~~f~~ 619 (645)
T KOG0681|consen 541 EIMDT-ILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANPTFTL 619 (645)
T ss_pred HHHHH-HHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCcccch
Confidence 44444 45668999999999999999999999999999999999999999899999999999999999999998899999
Q ss_pred ccccHHHHhhcCchhhhhhc
Q psy430 87 MWISKQEYDESGPSIVHRKC 106 (107)
Q Consensus 87 ~~Itr~eY~e~G~~~~~~k~ 106 (107)
.++||+||+|+|+.++++++
T Consensus 620 ~~~Tr~dy~E~G~e~~kEh~ 639 (645)
T KOG0681|consen 620 TQITRKDYEEKGEEYLKEHV 639 (645)
T ss_pred hhhhHHhhhhhhHHHHHHHh
Confidence 99999999999999999876
No 14
>KOG0677|consensus
Probab=99.74 E-value=9.4e-19 Score=129.21 Aligned_cols=95 Identities=37% Similarity=0.732 Sum_probs=81.7
Q ss_pred hhcCCCCChhhhhccccCeEEecCCCCCcChHHHHHHHHHhhCC-----------CCceeEEeCCCCCccceeehhhhhc
Q psy430 11 YSGSHPARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAP-----------STMKIKIIAPPERKYSVWIGGSILA 79 (107)
Q Consensus 11 ~~~i~~~~~d~r~~l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p-----------~~~~v~v~~~~~~~~~~W~Ggsi~a 79 (107)
+..|++.++|+|..||++|+|+||+++.||+..||++||+++.- ..+++++-.+|.+.+.+|+||+++|
T Consensus 280 F~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA 359 (389)
T KOG0677|consen 280 FNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLA 359 (389)
T ss_pred HHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHH
Confidence 34567789999999999999999999999999999999998631 1245777788889999999999999
Q ss_pred cc-cccccccccHHHHhhcCchhhhhh
Q psy430 80 SL-STFQQMWISKQEYDESGPSIVHRK 105 (107)
Q Consensus 80 ~l-~~~~~~~Itr~eY~e~G~~~~~~k 105 (107)
.+ ..-+++|+||+||+|.|.+++.+.
T Consensus 360 ~imkD~d~fW~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 360 GIMKDKDEFWMSKQEYQEEGINVLNKL 386 (389)
T ss_pred HHhcCCccceecHHHHHhhhHHHHHhh
Confidence 85 456789999999999999988764
No 15
>KOG0678|consensus
Probab=99.73 E-value=5.8e-19 Score=132.98 Aligned_cols=99 Identities=30% Similarity=0.578 Sum_probs=86.0
Q ss_pred hhHHHHHHhhhcCCCCChhhhhccccCeEEecCCCCCcChHHHHHHHHHhhC--------------CCCceeEEeCCCCC
Q psy430 2 SEVTTSLIEYSGSHPARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALA--------------PSTMKIKIIAPPER 67 (107)
Q Consensus 2 ~~~~~~~i~~~~i~~~~~d~r~~l~~nIvltGG~s~~~G~~~Rl~~eL~~~~--------------p~~~~v~v~~~~~~ 67 (107)
++|+|.+| ++||+|.|+.||+||+++||.+++++|..|++++++.++ |....++|+...-.
T Consensus 296 ~~~vd~~I-----q~~pIdvrr~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~q 370 (415)
T KOG0678|consen 296 SEVVDWVI-----QHCPIDVRRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQ 370 (415)
T ss_pred HHHhhhhh-----hhCCcccchhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhh
Confidence 45555554 459999999999999999999999999999999998764 23346888888778
Q ss_pred ccceeehhhhhccccccccccccHHHHhhcCchhhhhh
Q psy430 68 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 105 (107)
Q Consensus 68 ~~~~W~Ggsi~a~l~~~~~~~Itr~eY~e~G~~~~~~k 105 (107)
++++|.||+++++.+.|...+-||++|+|+|++|++..
T Consensus 371 r~avwfggs~lastpef~~~~~tk~~yee~g~si~r~~ 408 (415)
T KOG0678|consen 371 RTAVWFGGSKLASTPEFVPACHTKEDYEEYGPSICRTN 408 (415)
T ss_pred hcceeccCccccCCcccccccCcchhhhhhChhhhhcC
Confidence 89999999999999999999999999999999998763
No 16
>KOG0797|consensus
Probab=99.49 E-value=1.1e-14 Score=114.80 Aligned_cols=90 Identities=22% Similarity=0.611 Sum_probs=82.6
Q ss_pred ChhhhhccccCeEEecCCCCCcChHHHHHHHHHhhCCCC----ceeEEeCCC---CCccceeehhhhhcccccccccccc
Q psy430 18 RAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAPST----MKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWIS 90 (107)
Q Consensus 18 ~~d~r~~l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~----~~v~v~~~~---~~~~~~W~Ggsi~a~l~~~~~~~It 90 (107)
..|.+++||+.|.++||..++||+.+-|++.+....|+. ..|.|+.+| ||++-+|+||+|++.+...++.||+
T Consensus 519 sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~~~ELwI~ 598 (618)
T KOG0797|consen 519 SDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDFVRELWIE 598 (618)
T ss_pred cchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHHHHHHhee
Confidence 568999999999999999999999999999999988872 257888877 7999999999999999999999999
Q ss_pred HHHHhhcCchhhhhhcC
Q psy430 91 KQEYDESGPSIVHRKCF 107 (107)
Q Consensus 91 r~eY~e~G~~~~~~k~~ 107 (107)
+.||+-+|.++++.||.
T Consensus 599 ~~dW~~~G~RvL~~k~~ 615 (618)
T KOG0797|consen 599 NSDWQVHGVRVLQYKKY 615 (618)
T ss_pred chhHhhhhhhhhhhccc
Confidence 99999999999999973
No 17
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=98.70 E-value=4.2e-09 Score=79.84 Aligned_cols=60 Identities=20% Similarity=0.312 Sum_probs=49.8
Q ss_pred hhcCCCCChhhhhcccc-CeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhh
Q psy430 11 YSGSHPARAKFTKHFPH-DVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 78 (107)
Q Consensus 11 ~~~i~~~~~d~r~~l~~-nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~ 78 (107)
...+++||+++++.+++ +|+||||+|++|||.+|+++++. +.+....+|..++=.|+..+
T Consensus 263 ~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~--------~~v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 263 RATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIV--------VPVHVAANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHC--------CCceeCCCHHHHHHHHHHHH
Confidence 45688899999999998 69999999999999999999994 23344567888888888765
No 18
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=98.66 E-value=8.9e-09 Score=77.71 Aligned_cols=61 Identities=15% Similarity=0.242 Sum_probs=50.7
Q ss_pred hcCCCCChhhhhcccc-CeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 12 SGSHPARAKFTKHFPH-DVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 12 ~~i~~~~~d~r~~l~~-nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
..+.+|+.+.+.++++ +|+|+||+|++|||.+||++++. +.+....+|..++=.||+++..
T Consensus 265 ~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~--------~~v~~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 265 RTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETG--------LPVIVADDPLLCVAKGTGKALE 326 (333)
T ss_pred HHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHC--------CCceecCChHHHHHHHHHHHHh
Confidence 3466789999999997 79999999999999999999993 3455566788889999998754
No 19
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=98.64 E-value=9.5e-09 Score=78.23 Aligned_cols=60 Identities=15% Similarity=0.277 Sum_probs=50.4
Q ss_pred cCCCCChhhhhccccC-eEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 13 GSHPARAKFTKHFPHD-VVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 13 ~i~~~~~d~r~~l~~n-IvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
.+.++|+++..++++| |+||||+|+++|+.++|++++ .+.|...++|.+++=.|+..+..
T Consensus 260 ~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~--------~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 260 VLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET--------GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH--------SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH--------CCCEEEcCCHHHHHHHHHHHHHh
Confidence 4777999999999986 999999999999999999999 56778888899999999877643
No 20
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=98.62 E-value=1.4e-08 Score=76.33 Aligned_cols=61 Identities=15% Similarity=0.210 Sum_probs=50.2
Q ss_pred hcCCCCChhhhhccccC-eEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 12 SGSHPARAKFTKHFPHD-VVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 12 ~~i~~~~~d~r~~l~~n-IvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
..+.+|+.+.+.++++| |+|+||+|++|||.+||++++. +.+....+|..++=.|+++++.
T Consensus 266 ~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~--------~~v~~~~~p~~ava~Ga~~~~~ 327 (335)
T PRK13930 266 SVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETG--------LPVHIAEDPLTCVARGTGKALE 327 (335)
T ss_pred HHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHC--------CCceecCCHHHHHHHHHHHHHh
Confidence 35667999999999998 9999999999999999999984 2344455677788889998764
No 21
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=98.56 E-value=2e-08 Score=75.62 Aligned_cols=61 Identities=13% Similarity=0.224 Sum_probs=49.6
Q ss_pred hcCCCCChhhhhccccC-eEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 12 SGSHPARAKFTKHFPHD-VVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 12 ~~i~~~~~d~r~~l~~n-IvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
..+++|+.+++++++++ |+|+||+|++|||.+||++++. +++....+|..++=.|+++++.
T Consensus 262 ~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~--------~~v~~~~~P~~ava~Ga~~~~~ 323 (334)
T PRK13927 262 VALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETG--------LPVHVAEDPLTCVARGTGKALE 323 (334)
T ss_pred HHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHC--------CCcEecCCHHHHHHHHHHHHHh
Confidence 34677899999999985 9999999999999999999983 2344555677888899988764
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=98.40 E-value=1.1e-07 Score=71.98 Aligned_cols=61 Identities=11% Similarity=0.270 Sum_probs=50.0
Q ss_pred hcCCCCChhhhhcccc-CeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 12 SGSHPARAKFTKHFPH-DVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 12 ~~i~~~~~d~r~~l~~-nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
..+++++.++++..+. +|+|+||+|++||+.+++++++. ..|....+|..++=+|+++++.
T Consensus 261 ~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~--------~~v~~~~~P~~ava~Gaa~~~~ 322 (336)
T PRK13928 261 SVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETK--------VPVYIAEDPISCVALGTGKMLE 322 (336)
T ss_pred HHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHC--------CCceecCCHHHHHHHHHHHHHh
Confidence 3566788888888888 79999999999999999999994 2344455688899999998754
No 23
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=97.61 E-value=3.3e-05 Score=56.27 Aligned_cols=43 Identities=28% Similarity=0.577 Sum_probs=34.5
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSI 77 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi 77 (107)
..|+||||+|++||+.+.|++.+. +.|..+.+|.+.+=+|+++
T Consensus 196 ~~v~LtGG~a~ipgl~e~l~~~lg--------~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 196 KDLYLVGGACSFSGFADVFEKQLG--------LNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred CEEEEECchhcchhHHHHHHHHhC--------CCcccCCCCCeehhheeec
Confidence 479999999999999999999983 3344566788888787763
No 24
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=97.59 E-value=5.1e-05 Score=56.08 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=37.4
Q ss_pred cccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhc
Q psy430 25 FPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 79 (107)
Q Consensus 25 l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a 79 (107)
-.+.|+|+||+|++||+.+.+++.+. ..+..+++|.+.+=.|+++++
T Consensus 221 ~~~~IvLtGG~s~lpgl~e~l~~~lg--------~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 221 DVEDIYLVGGTCCLPGFEEVFEKQTG--------LPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CCCEEEEECCcccchhHHHHHHHHhC--------CCcccCCCchHHHHHHHHhhC
Confidence 34689999999999999999999983 223446678888888887753
No 25
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=97.55 E-value=2.4e-05 Score=59.65 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=54.7
Q ss_pred hHHHHHHh--hhcCCCCChhhhhccccC-eEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhh
Q psy430 3 EVTTSLIE--YSGSHPARAKFTKHFPHD-VVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 78 (107)
Q Consensus 3 ~~~~~~i~--~~~i~~~~~d~r~~l~~n-IvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~ 78 (107)
|.++.+++ -..+.+||+++-.+.+++ |+++||+|+++|+.+.+..|. .+.|...++|...+=+|+...
T Consensus 258 ~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et--------~~pv~ia~~pL~~Va~G~G~~ 328 (342)
T COG1077 258 EPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET--------GVPVIIADDPLTCVAKGTGKA 328 (342)
T ss_pred HHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc--------CCeEEECCChHHHHHhccchh
Confidence 33444444 345788999999999999 999999999999999999887 667777888888887787664
No 26
>CHL00094 dnaK heat shock protein 70
Probab=96.54 E-value=0.0021 Score=52.65 Aligned_cols=48 Identities=29% Similarity=0.329 Sum_probs=37.1
Q ss_pred cccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 25 FPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 25 l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
-...|+|+||+|++|++++.+.+.+.. .+....+|..++-.||+++|.
T Consensus 328 ~i~~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~~pdeava~GAA~~aa 375 (621)
T CHL00094 328 DIDEVVLVGGSTRIPAIQELVKKLLGK--------KPNQSVNPDEVVAIGAAVQAG 375 (621)
T ss_pred hCcEEEEECCccCChHHHHHHHHHhCC--------CcCcCCCchhHHHhhhHHHHH
Confidence 347899999999999999999987732 122334567888999998875
No 27
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=96.34 E-value=0.0028 Score=51.53 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=36.7
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
...|+|+||+|++|.+.+.+.+.+.. .+....+|..++-.||+++|.
T Consensus 325 i~~V~LvGGssriP~v~~~i~~~f~~--------~~~~~~~pdeava~GAa~~aa 371 (595)
T TIGR02350 325 IDEVILVGGSTRIPAVQELVKDFFGK--------EPNKSVNPDEVVAIGAAIQGG 371 (595)
T ss_pred CcEEEEECCcccChHHHHHHHHHhCC--------cccCCcCcHHHHHHHHHHHHH
Confidence 47899999999999999999886631 233445677888899998865
No 28
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=96.32 E-value=0.0057 Score=47.91 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=41.6
Q ss_pred CCCCChhhhh-----ccccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeC----CCCCccceeehhhhhcc
Q psy430 14 SHPARAKFTK-----HFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIA----PPERKYSVWIGGSILAS 80 (107)
Q Consensus 14 i~~~~~d~r~-----~l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~----~~~~~~~~W~Ggsi~a~ 80 (107)
+..++.+++. .+-+.|+||||+|++||+.+.+++.+..-..-.....+.. ..+|.|++=.|...++.
T Consensus 312 l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 312 ILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGK 387 (420)
T ss_pred HHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHHHHHHHHHHHhh
Confidence 3334555543 3455699999999999999999988853110000001111 13578888888877765
No 29
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=96.28 E-value=0.0038 Score=51.18 Aligned_cols=47 Identities=21% Similarity=0.291 Sum_probs=36.4
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
...|+|+||+|.+|.+.+++.+.+.. .+....+|..++-.||+++|.
T Consensus 327 id~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~npdeava~GAa~~aa 373 (627)
T PRK00290 327 IDEVILVGGSTRMPAVQELVKEFFGK--------EPNKGVNPDEVVAIGAAIQGG 373 (627)
T ss_pred CcEEEEECCcCCChHHHHHHHHHhCC--------CCCcCcCChHHHHHhHHHHHH
Confidence 47899999999999999999887622 122344577888899998765
No 30
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=95.98 E-value=0.0027 Score=51.96 Aligned_cols=47 Identities=28% Similarity=0.399 Sum_probs=36.5
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
...|+|+||+|++|.+.+.+.+.+.. ++....+|..++=.||++.|.
T Consensus 309 Id~ViLvGGssriP~v~~~l~~~f~~--------~~~~~~npdeaVA~GAAi~a~ 355 (595)
T PRK01433 309 IDGVILVGGATRIPLIKDELYKAFKV--------DILSDIDPDKAVVWGAALQAE 355 (595)
T ss_pred CcEEEEECCcccChhHHHHHHHHhCC--------CceecCCchHHHHHHHHHHHH
Confidence 48899999999999999999877631 233445677888889888765
No 31
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=95.94 E-value=0.0072 Score=49.47 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=36.3
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
...|+|+||+|++|++.+.+.+.+.. .+....+|..++=.||+++|.
T Consensus 313 id~ViLvGGssriP~V~~~l~~~f~~--------~~~~~~npdeaVA~GAai~a~ 359 (599)
T TIGR01991 313 IKGVVLVGGSTRMPLVRRAVAELFGQ--------EPLTDIDPDQVVALGAAIQAD 359 (599)
T ss_pred CCEEEEECCcCCChHHHHHHHHHhCC--------CCCCCCCCcHHHHHHHHHHHH
Confidence 47899999999999999999987632 122344677888889888775
No 32
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=95.91 E-value=0.0085 Score=49.64 Aligned_cols=47 Identities=26% Similarity=0.357 Sum_probs=35.9
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
...|+|+||+|.+|.+++.+.+.+.. .+....+|..++=.||+++|.
T Consensus 368 i~~ViLvGGssriP~v~~~l~~~f~~--------~~~~~~npdeaVA~GAAi~aa 414 (663)
T PTZ00400 368 LNDVILVGGMTRMPKVSETVKKIFGK--------EPSKGVNPDEAVAMGAAIQAG 414 (663)
T ss_pred CcEEEEECCccCChHHHHHHHHHhCC--------CcccCCCCccceeeccHHHHH
Confidence 47899999999999999999887632 122344567778888888764
No 33
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=95.68 E-value=0.0041 Score=47.64 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.3
Q ss_pred cC-eEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HD-VVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~n-IvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
.+ |+||||+|++||+.+++.+.+..
T Consensus 315 ~~gIvLtGG~S~ipgi~~~l~~~~~~ 340 (371)
T TIGR01174 315 NGGIVLTGGGAQLEGIVELAEKVFDN 340 (371)
T ss_pred CCEEEEeChHHcccCHHHHHHHHhCC
Confidence 45 99999999999999999998844
No 34
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=95.67 E-value=0.011 Score=48.56 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=35.7
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
...|+|+||+|++|.+.+.+.+.+... +....+|..++=.||+++|.
T Consensus 329 i~~ViLvGGssriP~v~~~l~~~fg~~--------~~~~~npdeaVA~GAAi~a~ 375 (616)
T PRK05183 329 VKEVVMVGGSTRVPLVREAVGEFFGRT--------PLTSIDPDKVVAIGAAIQAD 375 (616)
T ss_pred CCEEEEECCcccChHHHHHHHHHhccC--------cCcCCCchHHHHHHHHHHHH
Confidence 478999999999999999998776321 12334567778889888765
No 35
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=95.64 E-value=0.0094 Score=44.40 Aligned_cols=50 Identities=20% Similarity=0.401 Sum_probs=39.2
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhc
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 79 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a 79 (107)
++|+++||.++-+++.+.|+++|... + ..+.+..+++|++..=+||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~-~--~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA-K--MAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC-C--cceEecCCCcchHHHHHHHHHcC
Confidence 46999999999999999999998532 1 23445557788998888988764
No 36
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=95.54 E-value=0.012 Score=46.42 Aligned_cols=52 Identities=19% Similarity=0.315 Sum_probs=42.6
Q ss_pred cccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhc
Q psy430 25 FPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 79 (107)
Q Consensus 25 l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a 79 (107)
+-..|+++||.++-+++...|++.|....+ ..+|+.+++|++..=+||++++
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence 446899999999999999999999965443 3456778889999999998875
No 37
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=95.50 E-value=0.013 Score=48.66 Aligned_cols=48 Identities=25% Similarity=0.323 Sum_probs=35.7
Q ss_pred cccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 25 FPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 25 l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
-...|+|+||+|++|.+++.+.+.+.. - .....+|..++=.||+++|.
T Consensus 353 dId~VvLVGGssriP~V~~~l~~~fg~-~-------~~~~~nPdeaVA~GAAi~a~ 400 (657)
T PTZ00186 353 EINDVVLVGGMTRMPKVVEEVKKFFQK-D-------PFRGVNPDEAVALGAATLGG 400 (657)
T ss_pred hCCEEEEECCcccChHHHHHHHHHhCC-C-------ccccCCCchHHHHhHHHHHH
Confidence 346899999999999999999987732 1 12234566777888888765
No 38
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=95.42 E-value=0.0081 Score=47.26 Aligned_cols=48 Identities=27% Similarity=0.534 Sum_probs=41.0
Q ss_pred cccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 25 FPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 25 l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
+=+.|+++||.++.+|+.+.|++.| ..+++.+++|++..=+||+++++
T Consensus 355 i~~~VvftGGva~N~gvv~ale~~L--------g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 355 VREPVILVGGTSLIEGLVKALGDLL--------GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CCCcEEEECChhhhHHHHHHHHHHh--------CCcEEECCcccHHHHHHHHHHhc
Confidence 3345999999999999999999988 34677788899999999999874
No 39
>PRK13410 molecular chaperone DnaK; Provisional
Probab=95.21 E-value=0.014 Score=48.44 Aligned_cols=48 Identities=25% Similarity=0.257 Sum_probs=34.5
Q ss_pred cccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 25 FPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 25 l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
-...|+|+||+|++|.+.+.+.+.+.. .+....+|..++=.||++.|.
T Consensus 328 dId~VvLVGGssRiP~V~~~l~~~fg~--------~~~~~~npdeaVA~GAAi~aa 375 (668)
T PRK13410 328 DIDEVVLVGGSTRMPMVQQLVRTLIPR--------EPNQNVNPDEVVAVGAAIQAG 375 (668)
T ss_pred hCcEEEEECCccccHHHHHHHHHHcCC--------CcccCCCCchHHHHhHHHHHH
Confidence 346899999999999999999876531 122233466677788888765
No 40
>PLN03184 chloroplast Hsp70; Provisional
Probab=95.07 E-value=0.023 Score=47.24 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=34.5
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
...|+|+||+|++|.+++++.+.+... +....+|..++=.||++.|.
T Consensus 366 Id~ViLvGGssriP~V~~~i~~~fg~~--------~~~~~npdeaVA~GAAi~aa 412 (673)
T PLN03184 366 IDEVILVGGSTRIPAVQELVKKLTGKD--------PNVTVNPDEVVALGAAVQAG 412 (673)
T ss_pred ccEEEEECCccccHHHHHHHHHHhCCC--------cccccCcchHHHHHHHHHHH
Confidence 378999999999999999998877321 12223456677788888764
No 41
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=94.96 E-value=0.014 Score=44.20 Aligned_cols=49 Identities=16% Similarity=0.415 Sum_probs=39.2
Q ss_pred ccccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEe-CCCCCccceeehhhhhcc
Q psy430 24 HFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKII-APPERKYSVWIGGSILAS 80 (107)
Q Consensus 24 ~l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~-~~~~~~~~~W~Ggsi~a~ 80 (107)
.+=+.|+++||.+.-+|+.+.|+++|. .++. .+++|++..=+||+++|.
T Consensus 238 ~i~~~v~~~GGva~N~~l~~al~~~Lg--------~~v~~~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 238 GVEEGFFITGGIAKNPGVVKRIERILG--------IKAVDTKIDSQIAGALGAALFGY 287 (293)
T ss_pred CCCCCEEEECcccccHHHHHHHHHHhC--------CCceeCCCCccHHHHHHHHHHHH
Confidence 344579999999999999999999983 2333 355689999999999874
No 42
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=94.54 E-value=0.028 Score=40.89 Aligned_cols=42 Identities=26% Similarity=0.627 Sum_probs=34.7
Q ss_pred CeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhh
Q psy430 28 DVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSI 77 (107)
Q Consensus 28 nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi 77 (107)
.|+++||.+..+++.+++.+.| ...+..++++++.+=+|+++
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~l--------g~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKL--------GMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred CEEEECccccCHHHHHHHHHHh--------CCcEEcCCCccHHHHHHHHh
Confidence 7999999999999999999988 34566677777777777775
No 43
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=94.50 E-value=0.024 Score=44.30 Aligned_cols=44 Identities=25% Similarity=0.496 Sum_probs=40.6
Q ss_pred eEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 29 VVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 29 IvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
||++||.++..++..-+++.| ..+|+.||.+++..=.||+++++
T Consensus 346 iv~~GGva~n~av~~ale~~l--------g~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLL--------GRKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHh--------CCeeecCCccchhhHHHHHHHHh
Confidence 999999999999999999988 56889999999999999999885
No 44
>PRK13411 molecular chaperone DnaK; Provisional
Probab=94.42 E-value=0.027 Score=46.63 Aligned_cols=48 Identities=25% Similarity=0.319 Sum_probs=35.3
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
...|+|+||+|++|.++++|.+.+... ++....+|..++=.||++.|.
T Consensus 328 id~ViLvGGssriP~v~~~l~~~f~~~-------~~~~~~npdeaVA~GAAi~aa 375 (653)
T PRK13411 328 IDRVILVGGSTRIPAVQEAIQKFFGGK-------QPDRSVNPDEAVALGAAIQAG 375 (653)
T ss_pred CcEEEEECCCCCcchHHHHHHHHcCCc-------CcCCCCCchHHHHHHHHHHHH
Confidence 478999999999999999998766321 122334566777788888764
No 45
>PRK11678 putative chaperone; Provisional
Probab=94.38 E-value=0.029 Score=44.61 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=32.6
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
..|+|+||+|.+|++.+.+.+.+.. ..+. ..++-.++=.|.+++|.
T Consensus 401 d~VvLvGGsSriP~V~~~l~~~fg~-------~~v~-~g~~~~sVa~Gla~~a~ 446 (450)
T PRK11678 401 DVIYLTGGSARSPLIRAALAQQLPG-------IPIV-GGDDFGSVTAGLARWAQ 446 (450)
T ss_pred CEEEEcCcccchHHHHHHHHHHCCC-------CcEE-eCCCcchHHHHHHHHHH
Confidence 5799999999999999998876522 1122 22455677778877764
No 46
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=93.99 E-value=0.052 Score=44.92 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=34.7
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
...|+|+||+|++|.+++.+.+.+... .+....+|..++=.||+++|.
T Consensus 333 i~~ViLvGGssriP~v~~~i~~~f~~~-------~~~~~~npdeaVA~GAa~~aa 380 (653)
T PTZ00009 333 VHEVVLVGGSTRIPKVQSLIKDFFNGK-------EPCKSINPDEAVAYGAAVQAA 380 (653)
T ss_pred CcEEEEECCCCCChhHHHHHHHHhCCC-------CCCCCCCcchHHhhhhhhhHH
Confidence 478999999999999999998766321 122333566777788887754
No 47
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=93.85 E-value=0.041 Score=41.78 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=22.7
Q ss_pred cccCeEEecCCCCCcChHHHHHHHHH
Q psy430 25 FPHDVVLSGGTTMYPGIADRMQKEIT 50 (107)
Q Consensus 25 l~~nIvltGG~s~~~G~~~Rl~~eL~ 50 (107)
=.+.|+|+||++.++|+.+.|.++|.
T Consensus 274 ~i~~I~L~Ggga~l~gL~~~l~~~l~ 299 (340)
T PF11104_consen 274 SIERIYLSGGGARLPGLAEYLSEELG 299 (340)
T ss_dssp --SEEEEESGGGGSTTHHHHHHHHHT
T ss_pred CCCEEEEECCccchhhHHHHHHHHHC
Confidence 45779999999999999999999993
No 48
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=93.75 E-value=0.044 Score=44.13 Aligned_cols=47 Identities=21% Similarity=0.324 Sum_probs=34.9
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
...|+|+||+|.+|.+.+.|.+.+.. .+....+|..++=.||+++|.
T Consensus 329 i~~V~lvGG~sr~p~v~~~l~~~f~~--------~~~~~~~p~~aVA~GAa~~a~ 375 (602)
T PF00012_consen 329 IDSVLLVGGSSRIPYVQEALKELFGK--------KISKSVNPDEAVARGAALYAA 375 (602)
T ss_dssp ESEEEEESGGGGSHHHHHHHHHHTTS--------EEB-SS-TTTHHHHHHHHHHH
T ss_pred cceeEEecCcccchhhhhhhhhcccc--------ccccccccccccccccccchh
Confidence 46799999999999999988776531 233444567788899998875
No 49
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=92.64 E-value=0.089 Score=39.67 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=23.6
Q ss_pred cccCeEEecCCCCCcChHHHHHHHHH
Q psy430 25 FPHDVVLSGGTTMYPGIADRMQKEIT 50 (107)
Q Consensus 25 l~~nIvltGG~s~~~G~~~Rl~~eL~ 50 (107)
..+.|+||||++.++||.+.|++++.
T Consensus 282 ~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 282 SLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred ccceEEEECccccchhHHHHHHHHHC
Confidence 35779999999999999999999995
No 50
>PRK13317 pantothenate kinase; Provisional
Probab=92.46 E-value=0.15 Score=38.10 Aligned_cols=51 Identities=22% Similarity=0.177 Sum_probs=40.7
Q ss_pred cccCeEEec-CCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 25 FPHDVVLSG-GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 25 l~~nIvltG-G~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
-.++|+++| |.+..|++.++|.+.++. ...+++.+++|++..=+||++++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~-----~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKL-----RNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhc-----CCceEEecCCCchhHHHHHHHHhh
Confidence 348999999 799999999999987642 134667788899999999998764
No 51
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=91.55 E-value=0.23 Score=39.37 Aligned_cols=58 Identities=22% Similarity=0.429 Sum_probs=36.2
Q ss_pred hccccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeC----CCCCccceeehhhhhcc
Q psy430 23 KHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIA----PPERKYSVWIGGSILAS 80 (107)
Q Consensus 23 ~~l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~----~~~~~~~~W~Ggsi~a~ 80 (107)
..+-+.|+||||++.+||+.+-..+-+...+.-.....+.- ..+|.|++=.|.-.++.
T Consensus 318 ~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~ 379 (418)
T COG0849 318 NHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGA 379 (418)
T ss_pred ccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccCchhhhhHHHHHHHh
Confidence 44557899999999999998766655542211000001111 23578888888777665
No 52
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=88.39 E-value=0.76 Score=33.70 Aligned_cols=24 Identities=33% Similarity=0.677 Sum_probs=22.0
Q ss_pred ccCeEEecCCCCCcChHHHHHHHH
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEI 49 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL 49 (107)
...+.|.||.++.||+++-++++|
T Consensus 227 i~dl~lvGGac~~~g~e~~Fe~~l 250 (277)
T COG4820 227 ITDLWLVGGACMQPGVEELFEKQL 250 (277)
T ss_pred CcceEEecccccCccHHHHHHHHh
Confidence 356899999999999999999999
No 53
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=86.77 E-value=0.066 Score=39.14 Aligned_cols=48 Identities=31% Similarity=0.495 Sum_probs=33.9
Q ss_pred eEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhc
Q psy430 29 VVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 79 (107)
Q Consensus 29 IvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a 79 (107)
|+++||...-+.+.+.|.+.|++..+.. .+..+..|.+.+..||.++|
T Consensus 224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 224 VVLSGGVFKNSPLVKALRDALKEKLPKV---PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp EEEESGGGGCHHHHHHHGGGS-HHHHCC---TCECECCGSSHHHHHHHHHH
T ss_pred EEEECCccCchHHHHHHHHHHHHhcCCC---ceEECCCCCccHHHHHHHhC
Confidence 9999999887777777766666555532 23344457899999999875
No 54
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=83.61 E-value=0.44 Score=36.48 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=30.0
Q ss_pred cccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 25 FPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 25 l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
=+.+|+|+||++.+ + ++.|+..+|. +...++|+++-=.|-..++.
T Consensus 291 ~~d~IiL~GGGA~l--l----~~~lk~~f~~-----~~~~~~p~~ANa~G~~~~g~ 335 (344)
T PRK13917 291 SFDRVIVTGGGANI--F----FDSLSHWYSD-----VEKADESQFANVRGYYKYGE 335 (344)
T ss_pred CCCEEEEECCcHHH--H----HHHHHHHcCC-----eEEcCChHHHHHHHHHHHHH
Confidence 35789999999976 4 4445555552 24456788887777666654
No 55
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=78.16 E-value=1.5 Score=33.08 Aligned_cols=44 Identities=25% Similarity=0.384 Sum_probs=28.3
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhh
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 78 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~ 78 (107)
+.+|+++||++.+ +.+.|+..+|. ..+...++|+++-=+|-..+
T Consensus 274 ~~~Iil~GGGa~l------l~~~l~~~f~~---~~i~~~~dp~~ANarG~~~~ 317 (320)
T TIGR03739 274 IQNIVLVGGGAFL------FKKAVKAAFPK---HRIVEVDEPMFANVRGFQIA 317 (320)
T ss_pred ccEEEEeCCcHHH------HHHHHHHHCCC---CeeEecCCcHHHHHHHHHHh
Confidence 6789999999853 44556666674 34445567777755554433
No 56
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=62.93 E-value=8.5 Score=28.25 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=29.6
Q ss_pred CeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhc
Q psy430 28 DVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 79 (107)
Q Consensus 28 nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a 79 (107)
-|+|.|+.+..+.|-+++.+.++.. +....+.+....-...++-.||+.++
T Consensus 236 ~IvlgG~~~~~~~~~~~i~~~l~~~-~~~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 236 CVVLGGSVGLAEGYLELVQAYLAQE-PAIYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred EEEEcCccccHHHHHHHHHHHHHhc-ccccCCeEEECccCCchhhhhHHHHh
Confidence 4777777665566667777777654 22123444444434556667887654
No 57
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=61.39 E-value=3 Score=31.48 Aligned_cols=42 Identities=14% Similarity=0.339 Sum_probs=22.5
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeeh
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIG 74 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~G 74 (107)
+.+|+++||++.+ +...|+...|.. .-+++.+.+|+++-=.|
T Consensus 273 ~~~I~~vGGGA~l------l~~~Ik~~~~~~-~~~i~i~~~pqfAnv~G 314 (318)
T PF06406_consen 273 IDRIFFVGGGAIL------LKDAIKEAFPVP-NERIVIVDDPQFANVRG 314 (318)
T ss_dssp -SEEEEESTTHHH------HHHHHHHHHT---GGGEE--SSGGGHHHHH
T ss_pred CCeEEEECCcHHH------HHHHHHHhhCCC-CCcEEECCCchhhHHHH
Confidence 4689999999844 344444444311 12355666778764433
No 58
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=61.38 E-value=6.4 Score=30.63 Aligned_cols=25 Identities=24% Similarity=0.558 Sum_probs=22.8
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHH
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEIT 50 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~ 50 (107)
...|+|+||++.+.|+.+-+.+.|.
T Consensus 288 id~i~LaGggA~l~gL~~~i~qrl~ 312 (354)
T COG4972 288 IDQILLAGGGASLEGLAAAIQQRLS 312 (354)
T ss_pred eeEEEEecCCcchhhHHHHHHHHhC
Confidence 4689999999999999999999884
No 59
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=58.95 E-value=6.1 Score=32.58 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=31.9
Q ss_pred cccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 25 FPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 25 l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
=..-|+++||++.+|=..+.+.+.+.. .+....+|..++=.||++.+.
T Consensus 309 ~I~~VilvGGstriP~V~~~v~~~f~~--------~~~~~inpdeava~GAa~qa~ 356 (579)
T COG0443 309 DIDLVILVGGSTRIPAVQELVKEFFGK--------EPEKSINPDEAVALGAAIQAA 356 (579)
T ss_pred hCceEEEccceeccHHHHHHHHHHhCc--------cccccCCccHHHHHHHHHHHH
Confidence 345699999999999988888877751 122333455556666666543
No 60
>KOG0100|consensus
Probab=58.75 E-value=7.6 Score=31.46 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=23.3
Q ss_pred hhhhhccccCeEEecCCCCCcChHHHHHHHH
Q psy430 19 AKFTKHFPHDVVLSGGTTMYPGIADRMQKEI 49 (107)
Q Consensus 19 ~d~r~~l~~nIvltGG~s~~~G~~~Rl~~eL 49 (107)
.++++.=...|||+||++.+|-..+-++.=+
T Consensus 356 s~lkKsdideiVLVGGsTrIPKvQqllk~fF 386 (663)
T KOG0100|consen 356 SDLKKSDIDEIVLVGGSTRIPKVQQLLKDFF 386 (663)
T ss_pred cCcccccCceEEEecCcccChhHHHHHHHHh
Confidence 3445555578999999999998887766544
No 61
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=55.97 E-value=14 Score=26.87 Aligned_cols=42 Identities=24% Similarity=0.526 Sum_probs=31.7
Q ss_pred CCCcChHHHHHHHHHhhCCC-CceeEEeCCCCCccceeehhhhhcc
Q psy430 36 TMYPGIADRMQKEITALAPS-TMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 36 s~~~G~~~Rl~~eL~~~~p~-~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
-+.|+|.+++++-|+.+.+. ..+|.+....| ++=+||++.|.
T Consensus 197 ~~~p~f~~~l~~~l~~L~~~~~~~v~~~~~~d---gsg~GAAi~AA 239 (243)
T PF03727_consen 197 EKYPNFRERLQEALDELLPEEGCKVEFVLSED---GSGVGAAIAAA 239 (243)
T ss_dssp HHSTTHHHHHHHHHHHHSTT-CEEEEEEE-SS---THHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHhcccccceEEEEEecC---chHHHHHHHHH
Confidence 35999999999999999997 33566666654 46678888764
No 62
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=55.94 E-value=12 Score=27.52 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=29.7
Q ss_pred CeEEecCCCCCcChHHHHHHHHHhhC-CCCceeEEeCCCCCccceeehhhhhc
Q psy430 28 DVVLSGGTTMYPGIADRMQKEITALA-PSTMKIKIIAPPERKYSVWIGGSILA 79 (107)
Q Consensus 28 nIvltGG~s~~~G~~~Rl~~eL~~~~-p~~~~v~v~~~~~~~~~~W~Ggsi~a 79 (107)
.|+|.||.+..+-|-+++.+.+.... |....+.+....-...++-.||+.++
T Consensus 248 ~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 248 LVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred EEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 46666666666667778888877543 22223344444333445566777654
No 63
>PRK09557 fructokinase; Reviewed
Probab=54.70 E-value=14 Score=27.19 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=29.5
Q ss_pred CeEEecCCCCCcChHHHHHHHHHhhCCC-CceeEEeCCCCCccceeehhhhh
Q psy430 28 DVVLSGGTTMYPGIADRMQKEITALAPS-TMKIKIIAPPERKYSVWIGGSIL 78 (107)
Q Consensus 28 nIvltGG~s~~~G~~~Rl~~eL~~~~p~-~~~v~v~~~~~~~~~~W~Ggsi~ 78 (107)
.|+|.||.+..+.|-+.+++.++....+ ...+++....-...+.=.||+.+
T Consensus 247 ~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~ 298 (301)
T PRK09557 247 VIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWL 298 (301)
T ss_pred EEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHh
Confidence 4677777777667777778777765432 22344444433334455566553
No 64
>KOG2495|consensus
Probab=53.54 E-value=21 Score=28.93 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=34.0
Q ss_pred HHhhhcCCCCChhhhhccccCeEEecCCCCCc---ChHHHHHHHHHhhCCC
Q psy430 8 LIEYSGSHPARAKFTKHFPHDVVLSGGTTMYP---GIADRMQKEITALAPS 55 (107)
Q Consensus 8 ~i~~~~i~~~~~d~r~~l~~nIvltGG~s~~~---G~~~Rl~~eL~~~~p~ 55 (107)
.++....-..+.+.|+.++.-+|+-||.+-+- -+..-+.++|+...|.
T Consensus 201 ~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~ 251 (491)
T KOG2495|consen 201 NLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPE 251 (491)
T ss_pred HHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhc
Confidence 35555566678888988988777777777431 2567778888888774
No 65
>KOG3445|consensus
Probab=53.00 E-value=14 Score=25.12 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=23.6
Q ss_pred cCCCCCcChHHHHHHHHHhhCCCCceeEEeCCC
Q psy430 33 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPP 65 (107)
Q Consensus 33 GG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~ 65 (107)
||+| .|+++-+++||..+...+..|.+...+
T Consensus 34 ggSS--rGmR~Fle~~L~~~a~enP~v~i~v~~ 64 (145)
T KOG3445|consen 34 GGSS--RGMREFLESELPDLARENPGVVIYVEP 64 (145)
T ss_pred CCcc--HHHHHHHHHHHHHHHhhCCCeEEEEec
Confidence 7777 799999999999888765555555443
No 66
>KOG2960|consensus
Probab=52.62 E-value=9.1 Score=28.55 Aligned_cols=51 Identities=24% Similarity=0.529 Sum_probs=28.7
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCC-CCccceeehhhhhccc
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP-ERKYSVWIGGSILASL 81 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~-~~~~~~W~Ggsi~a~l 81 (107)
-+.|+++|.+| .|+..-. ++... .++.++.++... .|.=.+|+||++++.+
T Consensus 76 esDvviVGAGS--aGLsAAY--~I~~~-rPdlkvaIIE~SVaPGGGaWLGGQLFSAM 127 (328)
T KOG2960|consen 76 ESDVVIVGAGS--AGLSAAY--VIAKN-RPDLKVAIIESSVAPGGGAWLGGQLFSAM 127 (328)
T ss_pred ccceEEECCCc--cccceee--eeecc-CCCceEEEEEeeecCCCcccccchhhhhh
Confidence 34577777665 3443211 11112 234455555432 4666899999999875
No 67
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=52.11 E-value=8.3 Score=20.41 Aligned_cols=12 Identities=50% Similarity=0.960 Sum_probs=9.8
Q ss_pred cccccHHHHhhc
Q psy430 86 QMWISKQEYDES 97 (107)
Q Consensus 86 ~~~Itr~eY~e~ 97 (107)
.-|||++||+|-
T Consensus 24 ~g~IT~eey~eI 35 (40)
T PF09693_consen 24 AGWITKEEYKEI 35 (40)
T ss_pred cCeECHHHHHHh
Confidence 349999999873
No 68
>PRK09698 D-allose kinase; Provisional
Probab=51.96 E-value=23 Score=26.05 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=30.8
Q ss_pred CeEEecCCCCCcC-hHHHHHHHHHhhCC-C--CceeEEeCCCCCccceeehhhhhc
Q psy430 28 DVVLSGGTTMYPG-IADRMQKEITALAP-S--TMKIKIIAPPERKYSVWIGGSILA 79 (107)
Q Consensus 28 nIvltGG~s~~~G-~~~Rl~~eL~~~~p-~--~~~v~v~~~~~~~~~~W~Ggsi~a 79 (107)
-|||.||.+..+. |.++|.+.++.... + ...+++...+-...++-+||+.++
T Consensus 239 ~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~ 294 (302)
T PRK09698 239 AIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILA 294 (302)
T ss_pred EEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHH
Confidence 3666666665543 57888888887653 1 223445444434455667888665
No 69
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=50.18 E-value=13 Score=18.61 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=16.0
Q ss_pred eEEecCCCCCcChHHHHHHHHHhh
Q psy430 29 VVLSGGTTMYPGIADRMQKEITAL 52 (107)
Q Consensus 29 IvltGG~s~~~G~~~Rl~~eL~~~ 52 (107)
-|=|||.| |-|..++.+||...
T Consensus 8 ~ISTnG~s--P~la~~iR~~ie~~ 29 (30)
T PF14824_consen 8 AISTNGKS--PRLARLIRKEIERL 29 (30)
T ss_dssp EEEESSS---HHHHHHHHHHHHHH
T ss_pred EEECCCCC--hHHHHHHHHHHHHh
Confidence 34578877 88999999888653
No 70
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=48.94 E-value=10 Score=20.73 Aligned_cols=15 Identities=20% Similarity=0.477 Sum_probs=11.1
Q ss_pred cccc-ccccHHHHhhc
Q psy430 83 TFQQ-MWISKQEYDES 97 (107)
Q Consensus 83 ~~~~-~~Itr~eY~e~ 97 (107)
.|-. .|||.+||+|-
T Consensus 25 ~~V~~~~IT~eey~eI 40 (45)
T TIGR01669 25 KFVEKKLITREQYKVI 40 (45)
T ss_pred HHhhcCccCHHHHHHH
Confidence 3433 59999999873
No 71
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=48.09 E-value=7.8 Score=30.25 Aligned_cols=26 Identities=27% Similarity=0.602 Sum_probs=19.4
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHh
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
...|+|+||++.=|-+-+||+..|..
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred CceEEEECCCcCCHHHHHHHHhhCCC
Confidence 35799999999888888888887743
No 72
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=47.66 E-value=7.6 Score=26.52 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=31.3
Q ss_pred cccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 25 FPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 25 l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
-.+.|+++||.++-+-+.+.+.+=+. ..|.+... ...+=+|++++|.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~------~~V~~~~~---~e~~a~GaA~~A~ 195 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLG------RPVVRPEV---EEASALGAALLAA 195 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHT------SEEEEESS---STHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhC------CceEeCCC---CchHHHHHHHHHH
Confidence 46889999999988888877776663 13333333 3456677777663
No 73
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=46.59 E-value=12 Score=29.25 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=20.5
Q ss_pred cCeEEecCCCCCcChHHHHHHHH
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEI 49 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL 49 (107)
+.|+++||++.=|-+-+||+.++
T Consensus 288 ~~vlv~GGGa~N~~Lm~~L~~~l 310 (365)
T PRK09585 288 DELLVCGGGARNPTLMERLAALL 310 (365)
T ss_pred CEEEEECCCcchHHHHHHHHHhc
Confidence 35999999999999999998877
No 74
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=44.76 E-value=24 Score=26.09 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=13.4
Q ss_pred CeEEecCCCCCcChHHHHHHHHHh
Q psy430 28 DVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 28 nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
.|++|||+| |+.--|.+.+.+
T Consensus 7 TiLITGG~s---GIGl~lak~f~e 27 (245)
T COG3967 7 TILITGGAS---GIGLALAKRFLE 27 (245)
T ss_pred EEEEeCCcc---hhhHHHHHHHHH
Confidence 499999998 544444444433
No 75
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=43.72 E-value=32 Score=26.80 Aligned_cols=48 Identities=19% Similarity=0.361 Sum_probs=35.8
Q ss_pred eEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCC---CCccceeehhhhhcc
Q psy430 29 VVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILAS 80 (107)
Q Consensus 29 IvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~---~~~~~~W~Ggsi~a~ 80 (107)
|+|+|-.+..|.|.+-+...|...+|. ++.... ...-.+=+|++++|+
T Consensus 264 IilSGr~~~~~~~~~~l~~~l~~~~~~----~v~~l~~~~~~aKeaA~GaAiIA~ 314 (343)
T PF07318_consen 264 IILSGRFSRIPEFRKKLEDRLEDYFPV----KVRKLEGLARKAKEAAQGAAIIAN 314 (343)
T ss_pred EEEeccccccHHHHHHHHHHHHhhccc----ceeecccccccchhhhhhHHHHhh
Confidence 999999999999999999999998872 222221 112246678888886
No 76
>KOG4058|consensus
Probab=41.64 E-value=26 Score=24.62 Aligned_cols=36 Identities=22% Similarity=0.548 Sum_probs=26.1
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCC
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP 65 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~ 65 (107)
|+|+++-|--|.+|-+..+|..|+ |.+.++--...|
T Consensus 139 y~~vviFgaes~m~dLe~KL~~E~----p~nt~vvacRFP 174 (199)
T KOG4058|consen 139 YRNVVIFGAESVMPDLEDKLRTEL----PANTRVVACRFP 174 (199)
T ss_pred cceEEEeehHHHHhhhHHHHHhhC----cCCCeEEEEecC
Confidence 568999999999999988888776 444444333344
No 77
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=40.66 E-value=33 Score=23.89 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=17.5
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHh
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
.++|+++||++ |+...+.+.|.+
T Consensus 2 ~k~ilItGas~---giG~~la~~l~~ 24 (248)
T PRK06947 2 RKVVLITGASR---GIGRATAVLAAA 24 (248)
T ss_pred CcEEEEeCCCC---cHHHHHHHHHHH
Confidence 46899999986 777777777754
No 78
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=39.62 E-value=61 Score=23.79 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=27.8
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCC
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 64 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~ 64 (107)
.+|++++|++-..++..++.+.|.... ...++.++.-
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~-~~~~i~vv~G 207 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQ-INISITLVTG 207 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccc-cCceEEEEEC
Confidence 579999999999999999998887653 3445555443
No 79
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=39.10 E-value=9.8 Score=29.53 Aligned_cols=50 Identities=18% Similarity=0.172 Sum_probs=32.5
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCC------CCccceeehhhhhcc
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP------ERKYSVWIGGSILAS 80 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~------~~~~~~W~Ggsi~a~ 80 (107)
.++++++||-+.=.-++++|++.... ..++++.+| +...-+|.|...+.+
T Consensus 264 ~~~lvv~GGVAaN~~LR~~l~~~~~~-----~~~~~~~p~~~~ctDNaaMIa~~g~~~~~~ 319 (345)
T PTZ00340 264 SNEVLIVGGVGCNLRLQEMMQQMAKE-----RGGKLFAMDERYCIDNGAMIAYAGLLEYLS 319 (345)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHH-----cCCEEEeCChHhhhhhHHHHHHHHHHHHHc
Confidence 47899999998777777777765543 134565554 234457777665543
No 80
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=37.92 E-value=24 Score=27.74 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=18.9
Q ss_pred CChhhhhccccCeEEecCCCC
Q psy430 17 ARAKFTKHFPHDVVLSGGTTM 37 (107)
Q Consensus 17 ~~~d~r~~l~~nIvltGG~s~ 37 (107)
.|...|+.+..+|+|+||.+.
T Consensus 210 i~~~vr~~~~~~IvI~G~~gs 230 (399)
T PRK08099 210 IPTEVRPFFVRTVAILGGESS 230 (399)
T ss_pred cCHHHhhCCCcEEEEEcCCCC
Confidence 588999999999999999873
No 81
>PRK03011 butyrate kinase; Provisional
Probab=36.16 E-value=37 Score=26.37 Aligned_cols=45 Identities=18% Similarity=0.417 Sum_probs=30.5
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG 75 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Gg 75 (107)
+-|||+||-+.-+-|.+++.+.+..+.| +.+....+...+.-.||
T Consensus 297 D~IVlgGGI~~~~~l~~~I~~~l~~~~p----v~i~p~~~e~~A~a~GA 341 (358)
T PRK03011 297 DAIVLTGGLAYSKRLVERIKERVSFIAP----VIVYPGEDEMEALAEGA 341 (358)
T ss_pred CEEEEeCccccCHHHHHHHHHHHHhhCC----eEEEeCCCHHHHHHHHH
Confidence 5599999998877777888888876654 55666554434444454
No 82
>PRK15027 xylulokinase; Provisional
Probab=36.15 E-value=31 Score=27.37 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=27.6
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
.+.|+++||+++-+-+.+-+.+-+ ...|....+...++=+|++++|.
T Consensus 387 ~~~i~~~GGga~s~~w~Qi~Adv~--------g~pv~~~~~~~~~~a~GaA~lA~ 433 (484)
T PRK15027 387 PQSVTLIGGGARSEYWRQMLADIS--------GQQLDYRTGGDVGPALGAARLAQ 433 (484)
T ss_pred ccEEEEeCcccCCHHHHHHHHHHh--------CCeEEeecCCCcchHHHHHHHHH
Confidence 467999999987766654444333 23332222223345678888764
No 83
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=34.96 E-value=34 Score=25.22 Aligned_cols=52 Identities=23% Similarity=0.204 Sum_probs=30.0
Q ss_pred CeEEecCCCCC-cChHHHHHHHHHhhCCCC--ceeEEeCCCCCccceeehhhhhc
Q psy430 28 DVVLSGGTTMY-PGIADRMQKEITALAPST--MKIKIIAPPERKYSVWIGGSILA 79 (107)
Q Consensus 28 nIvltGG~s~~-~G~~~Rl~~eL~~~~p~~--~~v~v~~~~~~~~~~W~Ggsi~a 79 (107)
.|+|.|+.+.. +-|.+++.+.++....+. ..+.+....-...++-.||+.++
T Consensus 254 ~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~~ 308 (318)
T TIGR00744 254 AIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADLA 308 (318)
T ss_pred EEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHHH
Confidence 36776665543 458888888887654321 12344444333445667887664
No 84
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=34.59 E-value=4.6 Score=26.34 Aligned_cols=59 Identities=22% Similarity=0.449 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhh----------CCCCceeEEeCCCCCccceeehhhhhccccccccccccHHHHhhcCch
Q psy430 41 IADRMQKEITAL----------APSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPS 100 (107)
Q Consensus 41 ~~~Rl~~eL~~~----------~p~~~~v~v~~~~~~~~~~W~Ggsi~a~l~~~~~~~Itr~eY~e~G~~ 100 (107)
+..+|++|+... +|..+.|.+...+...+.+| +..+-..+..+-...+..+.|.=.|+-
T Consensus 29 Ia~~L~remd~~a~~~~~~r~~aPN~y~V~Ls~~D~~~l~~~-~~~l~~el~~~l~~~a~~qgy~~~G~v 97 (116)
T PF12401_consen 29 IAKALRREMDDQARVVSRGRTLAPNVYTVELSPEDYERLSPW-GDRLARELADYLAEHAREQGYTFVGPV 97 (116)
T ss_dssp HHHHHHHHHHHT-B---TT--B---EEEEEEEHHHHHHH-S--SHHHHHHHHHHHHHHHHHHT-B-SS--
T ss_pred HHHHHHHHHHhCCeecCCCCEEcCeeEEEEECHHHHHHHhhh-HHHHHHHHHHHHHHHHHHCCCeecCCE
Confidence 567777777654 45555666665555677788 556555555555566777777766653
No 85
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=34.42 E-value=36 Score=27.07 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=26.5
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
.+.|.++||.++-+-+.+-+.+-+ ...|.....+. ++=+|+++++.
T Consensus 400 ~~~i~~~GGga~s~~w~Qi~ADv~--------g~pv~~~~~~e-~~alGaA~~a~ 445 (493)
T TIGR01311 400 ITKLRVDGGMTNNNLLMQFQADIL--------GVPVVRPKVTE-TTALGAAYAAG 445 (493)
T ss_pred CceEEEecccccCHHHHHHHHHhc--------CCeeEecCCCc-chHHHHHHHHH
Confidence 467999999997766665555433 22233222222 34477777654
No 86
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=34.26 E-value=1.5e+02 Score=21.80 Aligned_cols=61 Identities=5% Similarity=0.090 Sum_probs=46.0
Q ss_pred hHHHHHHhhhcCCCCChhhhhccc---c---CeEEecCCCCCcChHHHHHHHHHh-hCCCCceeEEeCCC
Q psy430 3 EVTTSLIEYSGSHPARAKFTKHFP---H---DVVLSGGTTMYPGIADRMQKEITA-LAPSTMKIKIIAPP 65 (107)
Q Consensus 3 ~~~~~~i~~~~i~~~~~d~r~~l~---~---nIvltGG~s~~~G~~~Rl~~eL~~-~~p~~~~v~v~~~~ 65 (107)
.+++..|+- +.+.|.+.|..+. . .++|.=.-.+-|.-.+++...|.. .++....+.+...|
T Consensus 148 ~lid~~i~~--l~~l~~~~r~~l~~~~~~~~~~~i~ta~~l~~~~~~~~~~~l~~~~~~~~~~~~f~~~p 215 (250)
T PRK14474 148 QIVGIFIAR--LEHLSEAERQALANSNTTPEMLRIRTSFELSQDLRAQILESLHQTHLIPGTDIHFVTSP 215 (250)
T ss_pred HHHHHHHHH--hcccCHHHHHHHHhhhcCCCCeEEEeCCCCCHHHHHHHHHHHHHHhcCCCCceeeecCc
Confidence 355555543 6678999888774 2 288888888899999999999999 88776666666555
No 87
>PRK05650 short chain dehydrogenase; Provisional
Probab=33.40 E-value=47 Score=23.62 Aligned_cols=21 Identities=14% Similarity=0.414 Sum_probs=16.7
Q ss_pred CeEEecCCCCCcChHHHHHHHHHh
Q psy430 28 DVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 28 nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+|++|||++ |+...+.++|..
T Consensus 2 ~vlVtGasg---gIG~~la~~l~~ 22 (270)
T PRK05650 2 RVMITGAAS---GLGRAIALRWAR 22 (270)
T ss_pred EEEEecCCC---hHHHHHHHHHHH
Confidence 689999997 777777777754
No 88
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=32.74 E-value=28 Score=23.64 Aligned_cols=24 Identities=25% Similarity=0.627 Sum_probs=20.2
Q ss_pred EecCCCCCcChHHHHHHHHHhhCCCC
Q psy430 31 LSGGTTMYPGIADRMQKEITALAPST 56 (107)
Q Consensus 31 ltGG~s~~~G~~~Rl~~eL~~~~p~~ 56 (107)
=|||.| |.+..++.++|...+|..
T Consensus 124 sT~G~s--P~la~~lr~~ie~~l~~~ 147 (157)
T PRK06719 124 STSGKD--PSFTKRLKQELTSILPKL 147 (157)
T ss_pred ECCCcC--hHHHHHHHHHHHHHhhHH
Confidence 377776 999999999999998864
No 89
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=32.00 E-value=42 Score=21.72 Aligned_cols=23 Identities=17% Similarity=0.527 Sum_probs=17.7
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHhh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITAL 52 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~~ 52 (107)
++++|+||++ |+..-+...|.+.
T Consensus 1 k~~lItGa~~---giG~~~a~~l~~~ 23 (167)
T PF00106_consen 1 KTVLITGASS---GIGRALARALARR 23 (167)
T ss_dssp EEEEEETTTS---HHHHHHHHHHHHT
T ss_pred CEEEEECCCC---HHHHHHHHHHHhc
Confidence 4688999996 8888777777665
No 90
>PRK07024 short chain dehydrogenase; Provisional
Probab=32.00 E-value=46 Score=23.49 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=17.4
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+++++|||++ |+...+.++|.+
T Consensus 3 ~~vlItGas~---gIG~~la~~l~~ 24 (257)
T PRK07024 3 LKVFITGASS---GIGQALAREYAR 24 (257)
T ss_pred CEEEEEcCCc---HHHHHHHHHHHH
Confidence 5799999987 777777777754
No 91
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=31.64 E-value=35 Score=24.10 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=20.4
Q ss_pred ecCCCCCcChHHHHHHHHHhhCCCCc
Q psy430 32 SGGTTMYPGIADRMQKEITALAPSTM 57 (107)
Q Consensus 32 tGG~s~~~G~~~Rl~~eL~~~~p~~~ 57 (107)
|||.| |.+..++.++|...+|+.+
T Consensus 125 T~G~s--P~la~~lr~~ie~~~~~~~ 148 (202)
T PRK06718 125 TDGAS--PKLAKKIRDELEALYDESY 148 (202)
T ss_pred CCCCC--hHHHHHHHHHHHHHcchhH
Confidence 67776 9999999999999888654
No 92
>PRK14878 UGMP family protein; Provisional
Probab=31.21 E-value=15 Score=27.85 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=21.6
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHh
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
.++|+|+||.+.=.-+.+++.+.++.
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~~~ 267 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMAED 267 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHH
Confidence 46899999999888888888887754
No 93
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=31.06 E-value=54 Score=24.68 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=34.2
Q ss_pred hccccCeEEecC-CCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhh
Q psy430 23 KHFPHDVVLSGG-TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGS 76 (107)
Q Consensus 23 ~~l~~nIvltGG-~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggs 76 (107)
..-.++|+++|| ....|.+.+++..-+.- +..+++.+.+..|..=+||.
T Consensus 228 ~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~-----~~~~~ifp~h~~y~gAlGAa 277 (279)
T TIGR00555 228 RYNIDRIVFIGSFLRNNQLLMKVLSYATNF-----WSKKALFLEHEGYSGAIGAL 277 (279)
T ss_pred HcCCCeEEEECCcccCCHHHHHHHHHHHhh-----cCceEEEECCcchHHHhhhc
Confidence 344689999999 66788888888876642 23566666666666666654
No 94
>PRK00047 glpK glycerol kinase; Provisional
Probab=30.90 E-value=49 Score=26.39 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=26.8
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
.+.|.++||.++-+-+.+-+.+=+ ...|.....+. ++=+|+++++.
T Consensus 404 ~~~i~~~GGga~s~~w~Qi~ADvl--------g~pV~~~~~~e-~~a~GaA~~A~ 449 (498)
T PRK00047 404 LKELRVDGGAVANNFLMQFQADIL--------GVPVERPVVAE-TTALGAAYLAG 449 (498)
T ss_pred CceEEEecCcccCHHHHHHHHHhh--------CCeeEecCccc-chHHHHHHHHh
Confidence 467999999998766655444333 22333322222 34577777664
No 95
>PRK07825 short chain dehydrogenase; Provisional
Probab=30.69 E-value=52 Score=23.40 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=17.9
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++|+||||++ |+...+.++|..
T Consensus 6 ~~ilVtGasg---giG~~la~~l~~ 27 (273)
T PRK07825 6 KVVAITGGAR---GIGLATARALAA 27 (273)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHH
Confidence 4799999996 888888887764
No 96
>PRK06924 short chain dehydrogenase; Provisional
Probab=30.63 E-value=53 Score=22.87 Aligned_cols=23 Identities=13% Similarity=0.462 Sum_probs=18.4
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHhh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITAL 52 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~~ 52 (107)
++|+++||++ |+...+.++|.+.
T Consensus 2 k~vlItGasg---giG~~ia~~l~~~ 24 (251)
T PRK06924 2 RYVIITGTSQ---GLGEAIANQLLEK 24 (251)
T ss_pred cEEEEecCCc---hHHHHHHHHHHhc
Confidence 5799999997 8888888887653
No 97
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=30.62 E-value=56 Score=23.42 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=16.9
Q ss_pred CeEEecCCCCCcChHHHHHHHHHhh
Q psy430 28 DVVLSGGTTMYPGIADRMQKEITAL 52 (107)
Q Consensus 28 nIvltGG~s~~~G~~~Rl~~eL~~~ 52 (107)
+|+||||+. ++...+.++|...
T Consensus 1 ~ilItGatG---~iG~~l~~~l~~~ 22 (317)
T TIGR01181 1 RILVTGGAG---FIGSNFVRYILNE 22 (317)
T ss_pred CEEEEcCCc---hHHHHHHHHHHHh
Confidence 589999997 6677777777553
No 98
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=30.55 E-value=42 Score=26.31 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=28.2
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
.+.|+++||.++-+-+.+.+.+=+. ..|..... ..++=+|+++++.
T Consensus 391 ~~~i~~~GG~s~s~~~~Q~~Adv~g--------~pv~~~~~-~e~~a~GaA~~a~ 436 (481)
T TIGR01312 391 IQSIRLIGGGAKSPAWRQMLADIFG--------TPVDVPEG-EEGPALGAAILAA 436 (481)
T ss_pred cceEEEeccccCCHHHHHHHHHHhC--------CceeecCC-CcchHHHHHHHHH
Confidence 4679999999988777665554441 12232222 2355677777764
No 99
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=30.52 E-value=42 Score=25.98 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=22.2
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHhhCC
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITALAP 54 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~~~p 54 (107)
+-||++||-+.-+-+.+++.+.|..++|
T Consensus 295 D~IV~gGGI~e~~~l~~~I~~~l~~~a~ 322 (351)
T TIGR02707 295 DAIVLTGGLAYSKYFVSEIIKRVSFIAP 322 (351)
T ss_pred CEEEEcchhhcCHHHHHHHHHHHHhhCC
Confidence 4599999999877777888888877765
No 100
>PRK05693 short chain dehydrogenase; Provisional
Probab=30.27 E-value=56 Score=23.27 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=17.9
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++++||||++ |+...+.+.|..
T Consensus 2 k~vlItGasg---giG~~la~~l~~ 23 (274)
T PRK05693 2 PVVLITGCSS---GIGRALADAFKA 23 (274)
T ss_pred CEEEEecCCC---hHHHHHHHHHHH
Confidence 5789999987 888888888754
No 101
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=30.05 E-value=69 Score=25.15 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=23.0
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHhhCCCCc
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITALAPSTM 57 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~ 57 (107)
.||+++||++ -.+.=+.+.|....|++-
T Consensus 174 ~NILisGGTG---SGKTTlLNal~~~i~~~e 201 (355)
T COG4962 174 CNILISGGTG---SGKTTLLNALSGFIDSDE 201 (355)
T ss_pred eeEEEeCCCC---CCHHHHHHHHHhcCCCcc
Confidence 5999999998 567788888888887653
No 102
>KOG1201|consensus
Probab=29.87 E-value=57 Score=24.98 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=22.9
Q ss_pred hhhcccc-CeEEecCCCCCcChHHHHHHHHHhhCC
Q psy430 21 FTKHFPH-DVVLSGGTTMYPGIADRMQKEITALAP 54 (107)
Q Consensus 21 ~r~~l~~-nIvltGG~s~~~G~~~Rl~~eL~~~~p 54 (107)
-++...+ .+++|||++ |+..-+..|+.+.-.
T Consensus 32 ~~k~v~g~~vLITGgg~---GlGr~ialefa~rg~ 63 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGS---GLGRLIALEFAKRGA 63 (300)
T ss_pred chhhccCCEEEEeCCCc---hHHHHHHHHHHHhCC
Confidence 4455555 488899997 999999988877543
No 103
>KOG0101|consensus
Probab=29.63 E-value=40 Score=28.38 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=19.3
Q ss_pred ccCeEEecCCCCCcChHHHHHHHH
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEI 49 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL 49 (107)
-..|||+||++.+|.+..-++.=+
T Consensus 335 i~~vvlVGGstriPk~~~ll~d~f 358 (620)
T KOG0101|consen 335 IDEVVLVGGSTRIPKVQKLLEDFF 358 (620)
T ss_pred CceeEEecCcccchHHHHHHHHHh
Confidence 456999999999999887666444
No 104
>cd01403 Cyt_c_Oxidase_VIIb Cytochrome C oxidase chain VIIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIb subunit is found only in eukaryotes and its specific function remains unclear. A rare polymorphism of the CcO VIIb gene may be associated with the high risk of nasopharyngeal carcinoma in a Cantonese family.
Probab=29.28 E-value=33 Score=19.21 Aligned_cols=14 Identities=29% Similarity=0.271 Sum_probs=11.4
Q ss_pred cccCeEEecCCCCC
Q psy430 25 FPHDVVLSGGTTMY 38 (107)
Q Consensus 25 l~~nIvltGG~s~~ 38 (107)
=|+|.+|.||.+..
T Consensus 8 KYGn~~l~~Ga~Fc 21 (51)
T cd01403 8 KYGNAVLISGATFC 21 (51)
T ss_pred hcCceEEecccchh
Confidence 47999999998754
No 105
>PRK06953 short chain dehydrogenase; Provisional
Probab=29.01 E-value=65 Score=22.14 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=16.7
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.++|+||++ |+...+.++|..
T Consensus 2 ~~vlvtG~sg---~iG~~la~~L~~ 23 (222)
T PRK06953 2 KTVLIVGASR---GIGREFVRQYRA 23 (222)
T ss_pred ceEEEEcCCC---chhHHHHHHHHh
Confidence 5789999997 777777777753
No 106
>PRK06101 short chain dehydrogenase; Provisional
Probab=28.99 E-value=55 Score=22.85 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=17.5
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+++++|||++ |+...+.++|..
T Consensus 2 ~~vlItGas~---giG~~la~~L~~ 23 (240)
T PRK06101 2 TAVLITGATS---GIGKQLALDYAK 23 (240)
T ss_pred cEEEEEcCCc---HHHHHHHHHHHh
Confidence 5789999986 888888777764
No 107
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=28.87 E-value=21 Score=27.77 Aligned_cols=59 Identities=10% Similarity=0.226 Sum_probs=36.0
Q ss_pred CChhhhhccccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCC------CCccceeehhhhhcc
Q psy430 17 ARAKFTKHFPHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP------ERKYSVWIGGSILAS 80 (107)
Q Consensus 17 ~~~d~r~~l~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~------~~~~~~W~Ggsi~a~ 80 (107)
+.--++..=.+.+++.||-+.=..|++++++... . ..++++.+| +...-+|.|...+.+
T Consensus 253 t~rAl~~~~~~~lvi~GGVaaN~~LR~~l~~~~~---~--~g~~~~~p~~~lCtDNaaMIA~ag~~~~~~ 317 (342)
T COG0533 253 TERALKHTGKKELVIAGGVAANSRLREMLEEMCK---E--RGAEVYIPPLELCTDNAAMIAYAGLLRYKA 317 (342)
T ss_pred HHHHHHHhCCCEEEEeccHHHhHHHHHHHHHHHH---h--cCCEEEcCChHhccchHHHHHHHHHHHHHc
Confidence 3333444455679999999876666666665553 1 134555544 345567888777765
No 108
>PRK07578 short chain dehydrogenase; Provisional
Probab=28.84 E-value=59 Score=21.95 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=17.7
Q ss_pred CeEEecCCCCCcChHHHHHHHHHhh
Q psy430 28 DVVLSGGTTMYPGIADRMQKEITAL 52 (107)
Q Consensus 28 nIvltGG~s~~~G~~~Rl~~eL~~~ 52 (107)
+++++||++ |+...+.+.|.+.
T Consensus 2 ~vlItGas~---giG~~la~~l~~~ 23 (199)
T PRK07578 2 KILVIGASG---TIGRAVVAELSKR 23 (199)
T ss_pred eEEEEcCCc---HHHHHHHHHHHhc
Confidence 689999986 8888888877654
No 109
>PRK09291 short chain dehydrogenase; Provisional
Probab=28.81 E-value=63 Score=22.53 Aligned_cols=22 Identities=9% Similarity=0.425 Sum_probs=17.1
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.|+||||++ |+...+.+.|..
T Consensus 3 ~~vlVtGasg---~iG~~ia~~l~~ 24 (257)
T PRK09291 3 KTILITGAGS---GFGREVALRLAR 24 (257)
T ss_pred CEEEEeCCCC---HHHHHHHHHHHH
Confidence 4699999997 777777777754
No 110
>PLN02596 hexokinase-like
Probab=28.41 E-value=67 Score=26.22 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=31.7
Q ss_pred CCcChHHHHHHHHHhhCCCCc--eeEEeCCCCCccceeehhhhhcccc
Q psy430 37 MYPGIADRMQKEITALAPSTM--KIKIIAPPERKYSVWIGGSILASLS 82 (107)
Q Consensus 37 ~~~G~~~Rl~~eL~~~~p~~~--~v~v~~~~~~~~~~W~Ggsi~a~l~ 82 (107)
..|+|++++++-|+.++++.. ++.+....| .+=+||+++|...
T Consensus 440 ~~p~f~~~l~~al~ellg~~~~~~i~~~~s~D---GSG~GAAl~AA~~ 484 (490)
T PLN02596 440 HYRVFRNYLHSSVWEMLGSELSDNVVIEHSHG---GSGAGALFLAACQ 484 (490)
T ss_pred eCcCHHHHHHHHHHHHhCcccCCcEEEEEccC---chhHHHHHHHHhh
Confidence 389999999999999986532 466655554 3668899987653
No 111
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=28.38 E-value=22 Score=21.87 Aligned_cols=23 Identities=35% Similarity=0.713 Sum_probs=16.7
Q ss_pred ccCeEEecCCCCCcChHHHHHHHH
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEI 49 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL 49 (107)
-++++++|++|-+ |+..|+.--.
T Consensus 39 pK~VLViGaStGy-GLAsRIa~aF 61 (78)
T PF12242_consen 39 PKKVLVIGASTGY-GLASRIAAAF 61 (78)
T ss_dssp -SEEEEES-SSHH-HHHHHHHHHH
T ss_pred CceEEEEecCCcc-cHHHHHHHHh
Confidence 3579999999976 7888887555
No 112
>PRK05854 short chain dehydrogenase; Provisional
Probab=28.11 E-value=79 Score=23.38 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=15.6
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.++||||++ |+..-+.++|..
T Consensus 15 k~~lITGas~---GIG~~~a~~La~ 36 (313)
T PRK05854 15 KRAVVTGASD---GLGLGLARRLAA 36 (313)
T ss_pred CEEEEeCCCC---hHHHHHHHHHHH
Confidence 4699999986 766666666543
No 113
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=27.78 E-value=58 Score=22.67 Aligned_cols=21 Identities=14% Similarity=0.502 Sum_probs=18.7
Q ss_pred cCeEEecCCCCCcChHHHHHHHHH
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEIT 50 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~ 50 (107)
++|++|||++ |+...+-.+|.
T Consensus 6 ~~ilITGas~---GiG~aia~~l~ 26 (251)
T COG1028 6 KVALVTGASS---GIGRAIARALA 26 (251)
T ss_pred CEEEEeCCCC---HHHHHHHHHHH
Confidence 5699999998 99999999887
No 114
>PRK08251 short chain dehydrogenase; Provisional
Probab=27.72 E-value=64 Score=22.41 Aligned_cols=22 Identities=23% Similarity=0.667 Sum_probs=16.8
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+++++|||++ |+...+.+.|.+
T Consensus 3 k~vlItGas~---giG~~la~~l~~ 24 (248)
T PRK08251 3 QKILITGASS---GLGAGMAREFAA 24 (248)
T ss_pred CEEEEECCCC---HHHHHHHHHHHH
Confidence 4689999986 777777777754
No 115
>PRK08267 short chain dehydrogenase; Provisional
Probab=27.61 E-value=67 Score=22.59 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=17.5
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++++|+||++ |+...+.+.|.+
T Consensus 2 k~vlItGasg---~iG~~la~~l~~ 23 (260)
T PRK08267 2 KSIFITGAAS---GIGRATALLFAA 23 (260)
T ss_pred cEEEEeCCCc---hHHHHHHHHHHH
Confidence 5799999997 888888777754
No 116
>PRK12742 oxidoreductase; Provisional
Probab=27.38 E-value=70 Score=21.98 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=17.0
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++|+|+||++ |+...+.+.|..
T Consensus 7 k~vlItGasg---gIG~~~a~~l~~ 28 (237)
T PRK12742 7 KKVLVLGGSR---GIGAAIVRRFVT 28 (237)
T ss_pred CEEEEECCCC---hHHHHHHHHHHH
Confidence 4699999987 777777777754
No 117
>PRK12937 short chain dehydrogenase; Provisional
Probab=27.35 E-value=67 Score=22.17 Aligned_cols=22 Identities=18% Similarity=0.516 Sum_probs=16.5
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++++++||++ |+...+.++|..
T Consensus 6 ~~vlItG~~~---~iG~~la~~l~~ 27 (245)
T PRK12937 6 KVAIVTGASR---GIGAAIARRLAA 27 (245)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHH
Confidence 4689999986 777777777654
No 118
>PRK06179 short chain dehydrogenase; Provisional
Probab=27.13 E-value=65 Score=22.78 Aligned_cols=23 Identities=13% Similarity=0.384 Sum_probs=17.7
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHhh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITAL 52 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~~ 52 (107)
++|++|||++ |+...+..+|...
T Consensus 5 ~~vlVtGasg---~iG~~~a~~l~~~ 27 (270)
T PRK06179 5 KVALVTGASS---GIGRATAEKLARA 27 (270)
T ss_pred CEEEEecCCC---HHHHHHHHHHHHC
Confidence 3699999996 7788888777653
No 119
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=27.08 E-value=19 Score=24.36 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=14.8
Q ss_pred ccCeEEecCCCCCcChH
Q psy430 26 PHDVVLSGGTTMYPGIA 42 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~ 42 (107)
-+.++++||+..+.||.
T Consensus 107 ~~~l~ivGGncsi~Gfd 123 (136)
T PF14781_consen 107 PSPLVIVGGNCSIQGFD 123 (136)
T ss_pred CCcEEEECceEEEEEeC
Confidence 36799999999999985
No 120
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.53 E-value=69 Score=21.91 Aligned_cols=22 Identities=9% Similarity=0.347 Sum_probs=17.1
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++|+|+||++ ++...|.+.|.+
T Consensus 7 ~~vlItGasg---~iG~~l~~~l~~ 28 (249)
T PRK12825 7 RVALVTGAAR---GLGRAIALRLAR 28 (249)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHH
Confidence 4799999986 677777777754
No 121
>KOG0683|consensus
Probab=26.50 E-value=45 Score=26.30 Aligned_cols=75 Identities=16% Similarity=0.295 Sum_probs=47.5
Q ss_pred ChhhhhccccCeEEecCCCC-CcC-------------------hHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhh
Q psy430 18 RAKFTKHFPHDVVLSGGTTM-YPG-------------------IADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSI 77 (107)
Q Consensus 18 ~~d~r~~l~~nIvltGG~s~-~~G-------------------~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi 77 (107)
+.-.|..|+.-|-++|-+.= +|| +..-+.+++.+. +.+.+...|.|..+-|.|+.
T Consensus 184 eahy~acLyaGl~i~G~N~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~----~Gviasf~pKp~~g~WngaG- 258 (380)
T KOG0683|consen 184 EAHYRACLYAGLNISGINVEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEK----FGVIASFDPKPILGDWNGAG- 258 (380)
T ss_pred hhhHHHHHhhheeeccccccccCceeEEeecchhcccchhhHHHHHHHHHHHHHH----hCeeEEecCCCCCCcccCcc-
Confidence 34567778888888886632 333 112222333222 24556667778899999943
Q ss_pred hccccccccccccHHHHhhcCchhhh
Q psy430 78 LASLSTFQQMWISKQEYDESGPSIVH 103 (107)
Q Consensus 78 ~a~l~~~~~~~Itr~eY~e~G~~~~~ 103 (107)
-...+.|++.|++.|..++.
T Consensus 259 ------~Htn~ST~~mr~~~g~~~i~ 278 (380)
T KOG0683|consen 259 ------CHTNFSTKEMREAGGLKIIE 278 (380)
T ss_pred ------cccccchhHHHhccCHHHHH
Confidence 23357899999999988764
No 122
>PRK07806 short chain dehydrogenase; Provisional
Probab=26.23 E-value=79 Score=21.95 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=17.7
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++++++||++ |+...+.++|..
T Consensus 7 k~vlItGasg---giG~~l~~~l~~ 28 (248)
T PRK07806 7 KTALVTGSSR---GIGADTAKILAG 28 (248)
T ss_pred cEEEEECCCC---cHHHHHHHHHHH
Confidence 4689999986 888888888764
No 123
>PRK06194 hypothetical protein; Provisional
Probab=26.11 E-value=66 Score=22.99 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=16.0
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++++||||++ |+...+.++|.+
T Consensus 7 k~vlVtGasg---gIG~~la~~l~~ 28 (287)
T PRK06194 7 KVAVITGAAS---GFGLAFARIGAA 28 (287)
T ss_pred CEEEEeCCcc---HHHHHHHHHHHH
Confidence 4699999996 666666666654
No 124
>PRK08264 short chain dehydrogenase; Validated
Probab=25.94 E-value=74 Score=21.95 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=18.2
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHhh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITAL 52 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~~ 52 (107)
+.|+|+||++ |+...+...|.+.
T Consensus 7 ~~vlItGgsg---~iG~~la~~l~~~ 29 (238)
T PRK08264 7 KVVLVTGANR---GIGRAFVEQLLAR 29 (238)
T ss_pred CEEEEECCCc---hHHHHHHHHHHHC
Confidence 4699999987 7788888887654
No 125
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=25.70 E-value=1e+02 Score=24.01 Aligned_cols=38 Identities=24% Similarity=0.507 Sum_probs=24.1
Q ss_pred CeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhh
Q psy430 28 DVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGS 76 (107)
Q Consensus 28 nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggs 76 (107)
-.|+.||++.+.-++..+...|+.+.. ++..+-|.||.
T Consensus 277 emvFigGGAGmapmRSHIfDqL~rlhS-----------kRkis~WYGAR 314 (410)
T COG2871 277 EMVFIGGGAGMAPMRSHIFDQLKRLHS-----------KRKISFWYGAR 314 (410)
T ss_pred ceEEEecCcCcCchHHHHHHHHHhhcc-----------cceeeeeeccc
Confidence 356666666666677777777766543 24556666665
No 126
>PRK08628 short chain dehydrogenase; Provisional
Probab=25.38 E-value=79 Score=22.15 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=17.0
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.++|+||++ |+...+.++|.+
T Consensus 8 ~~ilItGasg---giG~~la~~l~~ 29 (258)
T PRK08628 8 KVVIVTGGAS---GIGAAISLRLAE 29 (258)
T ss_pred CEEEEeCCCC---hHHHHHHHHHHH
Confidence 3689999986 778888777754
No 127
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=25.37 E-value=56 Score=23.14 Aligned_cols=25 Identities=32% Similarity=0.627 Sum_probs=20.9
Q ss_pred EecCCCCCcChHHHHHHHHHhhCCCCc
Q psy430 31 LSGGTTMYPGIADRMQKEITALAPSTM 57 (107)
Q Consensus 31 ltGG~s~~~G~~~Rl~~eL~~~~p~~~ 57 (107)
=|||.| |.+..++.+++...+|+.+
T Consensus 124 sT~G~s--P~la~~lr~~ie~~l~~~~ 148 (205)
T TIGR01470 124 SSGGAA--PVLARLLRERIETLLPPSL 148 (205)
T ss_pred ECCCCC--cHHHHHHHHHHHHhcchhH
Confidence 377777 9999999999999998653
No 128
>PRK06482 short chain dehydrogenase; Provisional
Probab=25.31 E-value=78 Score=22.50 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=17.2
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++++||||++ |+...+..+|..
T Consensus 3 k~vlVtGasg---~IG~~la~~L~~ 24 (276)
T PRK06482 3 KTWFITGASS---GFGRGMTERLLA 24 (276)
T ss_pred CEEEEecCCC---HHHHHHHHHHHH
Confidence 4689999986 777777777754
No 129
>PRK06182 short chain dehydrogenase; Validated
Probab=25.05 E-value=80 Score=22.47 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=17.1
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++|+||||++ |+...+.++|..
T Consensus 4 k~vlItGasg---giG~~la~~l~~ 25 (273)
T PRK06182 4 KVALVTGASS---GIGKATARRLAA 25 (273)
T ss_pred CEEEEECCCC---hHHHHHHHHHHH
Confidence 4699999987 777777777754
No 130
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=25.04 E-value=59 Score=25.72 Aligned_cols=47 Identities=11% Similarity=0.188 Sum_probs=27.4
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhccc
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 81 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~l 81 (107)
.+.|+++||+++-+-+.+-+.+-+ ...|..+..+. ++=+|+++++..
T Consensus 394 ~~~i~~~GGga~s~~w~Qi~Adv~--------g~pV~~~~~~e-~~~lGaA~~a~~ 440 (465)
T TIGR02628 394 ASELLLVGGGSKNTLWNQIRANML--------DIPVKVVDDAE-TTVAGAAMFGFY 440 (465)
T ss_pred cceEEEecCccCCHHHHHHhhhhc--------CCeeEeccCCc-chHHHHHHHHHH
Confidence 467999999987655544433222 23333333232 445888888764
No 131
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=25.02 E-value=79 Score=21.80 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=17.7
Q ss_pred CeEEecCCCCCcChHHHHHHHHHhh
Q psy430 28 DVVLSGGTTMYPGIADRMQKEITAL 52 (107)
Q Consensus 28 nIvltGG~s~~~G~~~Rl~~eL~~~ 52 (107)
+++++||++ |+...+.+.|.+.
T Consensus 2 ~vlItGas~---gIG~~ia~~l~~~ 23 (235)
T PRK09009 2 NILIVGGSG---GIGKAMVKQLLER 23 (235)
T ss_pred EEEEECCCC---hHHHHHHHHHHHh
Confidence 789999997 8787777777654
No 132
>PTZ00107 hexokinase; Provisional
Probab=24.81 E-value=89 Score=25.27 Aligned_cols=50 Identities=16% Similarity=0.237 Sum_probs=34.8
Q ss_pred eEEecCCC-CCcChHHHHHHHHHhhCCCC-ceeEEeCCCCCccceeehhhhhccc
Q psy430 29 VVLSGGTT-MYPGIADRMQKEITALAPST-MKIKIIAPPERKYSVWIGGSILASL 81 (107)
Q Consensus 29 IvltGG~s-~~~G~~~Rl~~eL~~~~p~~-~~v~v~~~~~~~~~~W~Ggsi~a~l 81 (107)
|-+.|+.- ..|+|++++++-|..++.+. -.|.+....| .+=+||++.|..
T Consensus 408 VgvDGSv~~~~p~f~~~~~~~l~~ll~~~~~~v~l~~a~D---GSg~GAAl~AA~ 459 (464)
T PTZ00107 408 VAIDGSVYVKNPWFRRLLQEYINSILGPDAGNVVFYLADD---GSGKGAAIIAAM 459 (464)
T ss_pred EEEeCcceecCccHHHHHHHHHHHHhCCCCCcEEEEEccC---chHHHHHHHHHH
Confidence 44445443 28999999999999987433 4566666654 466788887754
No 133
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=24.58 E-value=24 Score=26.69 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=20.8
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHh
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
..+|+|+||.+.=.-+.++|.+.+..
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~ 268 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAED 268 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHH
Confidence 45899999999877788888876644
No 134
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=24.41 E-value=80 Score=21.59 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=17.2
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
.+|+|+||++ |+...+.+.|.+
T Consensus 6 ~~ilItGasg---~iG~~l~~~l~~ 27 (246)
T PRK05653 6 KTALVTGASR---GIGRAIALRLAA 27 (246)
T ss_pred CEEEEECCCc---HHHHHHHHHHHH
Confidence 4799999985 778888777754
No 135
>PRK05876 short chain dehydrogenase; Provisional
Probab=24.39 E-value=79 Score=22.83 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=15.5
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++++||||++ |+...+..+|..
T Consensus 7 k~vlVTGas~---gIG~ala~~La~ 28 (275)
T PRK05876 7 RGAVITGGAS---GIGLATGTEFAR 28 (275)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHH
Confidence 3599999987 666666666543
No 136
>PRK12827 short chain dehydrogenase; Provisional
Probab=24.33 E-value=86 Score=21.58 Aligned_cols=22 Identities=23% Similarity=0.594 Sum_probs=16.8
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
.+|+|+||++ |+...+.++|.+
T Consensus 7 ~~ilItGasg---~iG~~la~~l~~ 28 (249)
T PRK12827 7 RRVLITGGSG---GLGRAIAVRLAA 28 (249)
T ss_pred CEEEEECCCC---hHHHHHHHHHHH
Confidence 3589999996 777777777765
No 137
>KOG1369|consensus
Probab=24.23 E-value=1.1e+02 Score=24.95 Aligned_cols=51 Identities=14% Similarity=0.288 Sum_probs=37.9
Q ss_pred eEEecCCC--CCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcccc
Q psy430 29 VVLSGGTT--MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 82 (107)
Q Consensus 29 IvltGG~s--~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~l~ 82 (107)
+|-.+|+- +.|.|++.+..-|+++......+.+...+|. +=.||+++|...
T Consensus 415 ~VgvdGsly~~yP~f~~~m~~~l~eLlg~~~~v~i~~s~dg---Sg~GAAL~Aav~ 467 (474)
T KOG1369|consen 415 TVGVDGSLYKNHPFFREYLKEALRELLGPSIHVKLVLSEDG---SGRGAALIAAVA 467 (474)
T ss_pred EEEeccchhHcCchHHHHHHHHHHHHhCCCceEEEEECCCC---ccccHHHHHHHH
Confidence 34444443 3899999999999999986667888887754 567899887653
No 138
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=24.22 E-value=90 Score=24.21 Aligned_cols=43 Identities=26% Similarity=0.455 Sum_probs=29.0
Q ss_pred CeEEecC--CCCCc-ChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 28 DVVLSGG--TTMYP-GIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 28 nIvltGG--~s~~~-G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
+|+|+|- ....| .|.+++.+-|. .++.++.. .++=+|++++|.
T Consensus 265 ~IvLSGs~g~~r~~~~v~~~I~~~L~------~~V~~L~~----ksAA~G~AiIA~ 310 (326)
T TIGR03281 265 GVVLAGSGGTLREPINFSGKIKRVLS------CKVLVLDS----ESAAIGLALIAE 310 (326)
T ss_pred cEEEeCcchhccCchHHHHHHHHHhC------CCeEEecc----hhhhhhHHHHHH
Confidence 6999998 77777 78777777764 23344333 455677777775
No 139
>PLN02914 hexokinase
Probab=24.01 E-value=78 Score=25.83 Aligned_cols=50 Identities=30% Similarity=0.434 Sum_probs=34.4
Q ss_pred eEEecCCC-CCcChHHHHHHHHHhhCCCCc--eeEEeCCCCCccceeehhhhhccc
Q psy430 29 VVLSGGTT-MYPGIADRMQKEITALAPSTM--KIKIIAPPERKYSVWIGGSILASL 81 (107)
Q Consensus 29 IvltGG~s-~~~G~~~Rl~~eL~~~~p~~~--~v~v~~~~~~~~~~W~Ggsi~a~l 81 (107)
|=+-||.- +.|+|++++++-|.+++++.. ++.+....| .+=.||+++|..
T Consensus 434 VavDGSv~~~~p~f~~~l~~~l~ellg~~~~~~i~i~~a~D---GSGvGAAl~AA~ 486 (490)
T PLN02914 434 VAMDGGLYEKYPQYRRYMQDAVTELLGLELSKNIAIEHTKD---GSGIGAALLAAT 486 (490)
T ss_pred EEEeCchhhcCccHHHHHHHHHHHHhCcccCCcEEEEEccC---chHHHHHHHHHH
Confidence 34444433 389999999999998885432 466666554 466789988764
No 140
>PRK04123 ribulokinase; Provisional
Probab=24.00 E-value=67 Score=25.93 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=24.7
Q ss_pred ccCeEEecCC-CCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 26 PHDVVLSGGT-TMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 26 ~~nIvltGG~-s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
.+.|+++||+ |+-+-+.+-+.+-+ ...|.+...+ -++=+|+++++.
T Consensus 439 ~~~i~~~GGg~s~s~~w~Qi~ADv~------g~pV~~~~~~---e~~alGaA~lA~ 485 (548)
T PRK04123 439 VEEVIAAGGIARKNPVLMQIYADVL------NRPIQVVASD---QCPALGAAIFAA 485 (548)
T ss_pred cceEEEeCCCcccCHHHHHHHHHhc------CCceEecCcc---ccchHHHHHHHH
Confidence 3679999999 87655544333222 1123222222 234467777764
No 141
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=23.99 E-value=84 Score=21.79 Aligned_cols=22 Identities=14% Similarity=0.395 Sum_probs=16.4
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++|+||||++ |+..-+.++|.+
T Consensus 6 k~vlItGas~---gIG~~ia~~l~~ 27 (248)
T TIGR01832 6 KVALVTGANT---GLGQGIAVGLAE 27 (248)
T ss_pred CEEEEECCCc---hHHHHHHHHHHH
Confidence 4699999986 777777766654
No 142
>PRK06180 short chain dehydrogenase; Provisional
Probab=23.96 E-value=82 Score=22.56 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=17.7
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.|++|||++ |+...+.++|..
T Consensus 5 ~~vlVtGasg---giG~~la~~l~~ 26 (277)
T PRK06180 5 KTWLITGVSS---GFGRALAQAALA 26 (277)
T ss_pred CEEEEecCCC---hHHHHHHHHHHh
Confidence 4699999997 888888877754
No 143
>COG3797 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.85 E-value=1.3e+02 Score=21.31 Aligned_cols=28 Identities=4% Similarity=0.099 Sum_probs=24.2
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHhhCCC
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITALAPS 55 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~~~p~ 55 (107)
+|+++.+..+ ...+.+||+.-+...++-
T Consensus 43 GNlvf~s~~~-~~el~~klE~afe~~fg~ 70 (178)
T COG3797 43 GNLVFESEAG-AAELEAKLEAAFEKRFGR 70 (178)
T ss_pred CCEEEEcCCC-hHHHHHHHHHHHHHHcCC
Confidence 6999999999 899999999888876653
No 144
>PRK06483 dihydromonapterin reductase; Provisional
Probab=23.83 E-value=93 Score=21.48 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=17.3
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.+++|||++ |+...+..+|..
T Consensus 3 k~vlItGas~---gIG~~ia~~l~~ 24 (236)
T PRK06483 3 APILITGAGQ---RIGLALAWHLLA 24 (236)
T ss_pred ceEEEECCCC---hHHHHHHHHHHH
Confidence 4789999996 888888877754
No 145
>KOG0104|consensus
Probab=23.75 E-value=78 Score=27.60 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=20.0
Q ss_pred cCeEEecCCCCCcChHHHHHHHHH
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEIT 50 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~ 50 (107)
+.|+|.||+|++|-..+-|++-+.
T Consensus 366 n~ViL~Gg~TRVP~VQe~l~k~v~ 389 (902)
T KOG0104|consen 366 NQVILFGGATRVPKVQETLIKAVG 389 (902)
T ss_pred heeEEecCcccCchHHHHHHHHHh
Confidence 569999999999999888775543
No 146
>PF10784 Plasmid_stab_B: Plasmid stability protein; InterPro: IPR019720 This family is conserved in the Enterobacteriales. It is a putative plasmid stability protein in that it is expressed from the operon involved in stability, but its actual function has not yet been characterised but it may be involved in the control of plasmid partition.; PDB: 2JD3_A.
Probab=23.45 E-value=14 Score=22.26 Aligned_cols=28 Identities=7% Similarity=0.078 Sum_probs=19.8
Q ss_pred HHHhhhcCCCCChhhhhccccCeEEecC
Q psy430 7 SLIEYSGSHPARAKFTKHFPHDVVLSGG 34 (107)
Q Consensus 7 ~~i~~~~i~~~~~d~r~~l~~nIvltGG 34 (107)
|-+.+..|.+.|...|.+++.+.+++|-
T Consensus 15 d~~a~~~iesv~~~~Rgdf~R~aliaG~ 42 (72)
T PF10784_consen 15 DRRACATIESVPQRERGDFQRAALIAGL 42 (72)
T ss_dssp HHHHHHHHHTS-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCHhHhhHHHHHHHHHHH
Confidence 3344444555799999999999888874
No 147
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=23.43 E-value=45 Score=24.71 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=19.3
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.|++.||++--|+|..=-..-|+.
T Consensus 125 grVvIf~gGtg~P~fTTDt~AALrA 149 (238)
T COG0528 125 GRVVIFGGGTGNPGFTTDTAAALRA 149 (238)
T ss_pred CCEEEEeCCCCCCCCchHHHHHHHH
Confidence 3599999999999998665555544
No 148
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=23.39 E-value=35 Score=11.95 Aligned_cols=6 Identities=17% Similarity=0.994 Sum_probs=2.9
Q ss_pred Ccccee
Q psy430 67 RKYSVW 72 (107)
Q Consensus 67 ~~~~~W 72 (107)
|.+.+|
T Consensus 2 pafnsw 7 (8)
T PF08260_consen 2 PAFNSW 7 (8)
T ss_pred cccccc
Confidence 445555
No 149
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=23.35 E-value=90 Score=21.46 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=17.1
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++++|+||++ |+...+.++|.+
T Consensus 7 ~~vlItGa~g---~iG~~la~~l~~ 28 (245)
T PRK12936 7 RKALVTGASG---GIGEEIARLLHA 28 (245)
T ss_pred CEEEEECCCC---hHHHHHHHHHHH
Confidence 4799999997 777777777754
No 150
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=23.26 E-value=89 Score=21.67 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=16.4
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++++||||++ ++...+.+.|..
T Consensus 5 ~~vlItG~sg---~iG~~la~~l~~ 26 (258)
T PRK12429 5 KVALVTGAAS---GIGLEIALALAK 26 (258)
T ss_pred CEEEEECCCc---hHHHHHHHHHHH
Confidence 4699999987 667777776654
No 151
>PRK07904 short chain dehydrogenase; Provisional
Probab=23.25 E-value=82 Score=22.38 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=17.4
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHhh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITAL 52 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~~ 52 (107)
++|++|||++ |+..-+.++|...
T Consensus 9 ~~vlItGas~---giG~~la~~l~~~ 31 (253)
T PRK07904 9 QTILLLGGTS---EIGLAICERYLKN 31 (253)
T ss_pred cEEEEEcCCc---HHHHHHHHHHHhc
Confidence 3589999986 7787777777554
No 152
>PRK07577 short chain dehydrogenase; Provisional
Probab=23.24 E-value=95 Score=21.25 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=17.8
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++|+++||++ |+...+.+.|.+
T Consensus 4 k~vlItG~s~---~iG~~ia~~l~~ 25 (234)
T PRK07577 4 RTVLVTGATK---GIGLALSLRLAN 25 (234)
T ss_pred CEEEEECCCC---cHHHHHHHHHHH
Confidence 4699999997 888888887764
No 153
>PRK07023 short chain dehydrogenase; Provisional
Probab=23.22 E-value=88 Score=21.71 Aligned_cols=21 Identities=10% Similarity=0.453 Sum_probs=17.2
Q ss_pred CeEEecCCCCCcChHHHHHHHHHh
Q psy430 28 DVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 28 nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+++|+||++ |+...+.++|.+
T Consensus 3 ~vlItGasg---giG~~ia~~l~~ 23 (243)
T PRK07023 3 RAIVTGHSR---GLGAALAEQLLQ 23 (243)
T ss_pred eEEEecCCc---chHHHHHHHHHh
Confidence 799999997 888888877754
No 154
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=23.00 E-value=95 Score=22.88 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=26.2
Q ss_pred CeEEec-CCCCC-cChHHHHHHHHHhhCCC-CceeEEeCCCC-Cccceeehhhhhcc
Q psy430 28 DVVLSG-GTTMY-PGIADRMQKEITALAPS-TMKIKIIAPPE-RKYSVWIGGSILAS 80 (107)
Q Consensus 28 nIvltG-G~s~~-~G~~~Rl~~eL~~~~p~-~~~v~v~~~~~-~~~~~W~Ggsi~a~ 80 (107)
-|+|.| |.+.. +.+.+++.+.+...... .....+....- ...+...|+..++.
T Consensus 250 ~IvigG~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ga~~~~~ 306 (314)
T COG1940 250 VIVIGGGGVSALGDLLLPRLRKLLAKYLFPPVLRPRIVEAALGGNDAGLIGAALLAL 306 (314)
T ss_pred eEEEECcccccchhHHHHHHHHHHHHhhcchhcccchhhhhcccccccchhHHHHHH
Confidence 466666 55543 56667777666655443 11112222211 24566667666553
No 155
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=22.83 E-value=61 Score=26.28 Aligned_cols=46 Identities=17% Similarity=0.380 Sum_probs=26.6
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
.+.|.++||.++-+-+.+-+.+=+ ...|..+..+. ++=+|++++|.
T Consensus 444 ~~~i~~~GGga~s~~w~Qi~ADvl--------g~pV~~~~~~e-~~alGaA~lA~ 489 (541)
T TIGR01315 444 IKSIFMSGGQCQNPLLMQLIADAC--------DMPVLIPYVNE-AVLHGAAMLGA 489 (541)
T ss_pred ccEEEEecCcccCHHHHHHHHHHH--------CCeeEecChhH-HHHHHHHHHHH
Confidence 467999999987665544333222 22333333333 44578888764
No 156
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=22.68 E-value=90 Score=21.63 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=16.6
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+++++|||++ |+...+.+.|.+
T Consensus 7 ~~~lItG~s~---~iG~~la~~l~~ 28 (247)
T PRK12935 7 KVAIVTGGAK---GIGKAITVALAQ 28 (247)
T ss_pred CEEEEECCCC---HHHHHHHHHHHH
Confidence 4699999986 777777777654
No 157
>PRK07102 short chain dehydrogenase; Provisional
Probab=22.44 E-value=90 Score=21.68 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=16.2
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.++++||++ |+...+.++|.+
T Consensus 2 ~~vlItGas~---giG~~~a~~l~~ 23 (243)
T PRK07102 2 KKILIIGATS---DIARACARRYAA 23 (243)
T ss_pred cEEEEEcCCc---HHHHHHHHHHHh
Confidence 4689999986 777777666654
No 158
>PRK12939 short chain dehydrogenase; Provisional
Probab=22.40 E-value=96 Score=21.39 Aligned_cols=22 Identities=9% Similarity=0.425 Sum_probs=17.1
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++++|+||++ |+...+.+.|.+
T Consensus 8 ~~vlItGa~g---~iG~~la~~l~~ 29 (250)
T PRK12939 8 KRALVTGAAR---GLGAAFAEALAE 29 (250)
T ss_pred CEEEEeCCCC---hHHHHHHHHHHH
Confidence 5699999986 777777777754
No 159
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=22.14 E-value=94 Score=22.88 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=16.3
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++++||||++ |+...+.++|..
T Consensus 7 k~vlVTGas~---gIG~~~a~~L~~ 28 (322)
T PRK07453 7 GTVIITGASS---GVGLYAAKALAK 28 (322)
T ss_pred CEEEEEcCCC---hHHHHHHHHHHH
Confidence 4699999986 777666666654
No 160
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=22.09 E-value=98 Score=21.69 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=17.0
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.++++||++ |+...+.+.|.+
T Consensus 7 ~~vlItGas~---~iG~~ia~~l~~ 28 (257)
T PRK07067 7 KVALLTGAAS---GIGEAVAERYLA 28 (257)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHH
Confidence 4699999997 777777777754
No 161
>KOG1579|consensus
Probab=22.06 E-value=2.1e+02 Score=22.17 Aligned_cols=68 Identities=15% Similarity=0.320 Sum_probs=43.2
Q ss_pred CeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCC----CCccceeehhhhhcccccccccccc-HHHHhhcCchhh
Q psy430 28 DVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP----ERKYSVWIGGSILASLSTFQQMWIS-KQEYDESGPSIV 102 (107)
Q Consensus 28 nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~----~~~~~~W~Ggsi~a~l~~~~~~~It-r~eY~e~G~~~~ 102 (107)
|+..+|=+-..|.+.+++..+|.... +...+=|.+.. +....-|.+.. ..... |.+ .++|...|.+++
T Consensus 222 ~~~~IGvNC~~~~~~~~~~~~L~~~~-~~~~llvYPNsGe~yd~~~g~~~~~~-----~~~~~-~~~~~~~~~~lGv~iI 294 (317)
T KOG1579|consen 222 NLLGIGVNCVSPNFVEPLLKELMAKL-TKIPLLVYPNSGEVYDNEKGGWIPTP-----FGLEP-WQTYVKKAIDLGVRII 294 (317)
T ss_pred ceEEEEeccCCchhccHHHHHHhhcc-CCCeEEEecCCCCCCccccCcccCCC-----cccch-HHHHHHHHHhccccee
Confidence 69999999999999999999999333 23333333322 33344566651 11111 433 678888888774
No 162
>PLN02295 glycerol kinase
Probab=22.00 E-value=69 Score=25.68 Aligned_cols=46 Identities=13% Similarity=0.189 Sum_probs=26.3
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
.+.|.++||+++-+-+.+-+.+=+ ...|..+..+. ++=+|++++|.
T Consensus 413 ~~~i~~~GGga~s~~w~Qi~ADv~--------g~pV~~~~~~e-~~alGaA~~A~ 458 (512)
T PLN02295 413 LFLLRVDGGATANNLLMQIQADLL--------GSPVVRPADIE-TTALGAAYAAG 458 (512)
T ss_pred cceEEEeccchhCHHHHHHHHHhc--------CCceEecCccc-cHHHHHHHHHH
Confidence 456999999987776655554433 22333332222 33467777664
No 163
>PRK05866 short chain dehydrogenase; Provisional
Probab=21.92 E-value=92 Score=22.78 Aligned_cols=22 Identities=18% Similarity=0.561 Sum_probs=16.5
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.++|+||++ |+...+.++|..
T Consensus 41 k~vlItGasg---gIG~~la~~La~ 62 (293)
T PRK05866 41 KRILLTGASS---GIGEAAAEQFAR 62 (293)
T ss_pred CEEEEeCCCc---HHHHHHHHHHHH
Confidence 4599999987 777777776644
No 164
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=21.91 E-value=89 Score=22.40 Aligned_cols=26 Identities=31% Similarity=0.672 Sum_probs=21.9
Q ss_pred EEecCCCCCcChHHHHHHHHHhhCCCCc
Q psy430 30 VLSGGTTMYPGIADRMQKEITALAPSTM 57 (107)
Q Consensus 30 vltGG~s~~~G~~~Rl~~eL~~~~p~~~ 57 (107)
|-|||.| |-+..++.+++.+++|+..
T Consensus 126 IsT~G~s--P~la~~ir~~Ie~~l~~~~ 151 (210)
T COG1648 126 ISTGGKS--PVLARLLREKIEALLPPSL 151 (210)
T ss_pred EECCCCC--hHHHHHHHHHHHHHcCCch
Confidence 4578877 8999999999999999764
No 165
>PLN02362 hexokinase
Probab=21.90 E-value=1.1e+02 Score=25.09 Aligned_cols=50 Identities=18% Similarity=0.348 Sum_probs=34.9
Q ss_pred eEEecCCC-CCcChHHHHHHHHHhhCCCCc--eeEEeCCCCCccceeehhhhhccc
Q psy430 29 VVLSGGTT-MYPGIADRMQKEITALAPSTM--KIKIIAPPERKYSVWIGGSILASL 81 (107)
Q Consensus 29 IvltGG~s-~~~G~~~Rl~~eL~~~~p~~~--~v~v~~~~~~~~~~W~Ggsi~a~l 81 (107)
|=+-||.- ..|+|++++++-|+.+++... ++.+....| .+=+||+++|..
T Consensus 445 VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~i~~a~D---GSgvGAAl~AA~ 497 (509)
T PLN02362 445 VAVEGGLYTNYTMFREYLHEALNEILGEDVAQHVILKATED---GSGIGSALLAAS 497 (509)
T ss_pred EEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEEccC---chHHHHHHHHHH
Confidence 44444443 389999999999999885432 455555554 467899988764
No 166
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=21.78 E-value=60 Score=25.14 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=24.0
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHhhCC
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITALAP 54 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~~~p 54 (107)
.-|+||||.+.=.-|-.++.+.+.-++|
T Consensus 298 DaIvLTGGiA~~~~f~~~I~~~v~~iap 325 (358)
T COG3426 298 DAIVLTGGIAYEKLFVDAIEDRVSWIAP 325 (358)
T ss_pred CEEEEecchhhHHHHHHHHHHHHhhhcc
Confidence 4699999999988898999988877766
No 167
>PTZ00335 tubulin alpha chain; Provisional
Probab=21.70 E-value=1.2e+02 Score=24.24 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=20.8
Q ss_pred ecCCCCCcChHHHHHHHHHhhCCCCceeEE
Q psy430 32 SGGTTMYPGIADRMQKEITALAPSTMKIKI 61 (107)
Q Consensus 32 tGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v 61 (107)
.||+. .|+..+|.+.|+...|......+
T Consensus 142 ~GGTG--SGlgs~l~e~l~d~yp~~~~~~~ 169 (448)
T PTZ00335 142 GGGTG--SGLGSLLLERLSVDYGKKSKLGF 169 (448)
T ss_pred CCCcc--chHHHHHHHHHHHhccccceeeE
Confidence 45554 59999999999999987554443
No 168
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.67 E-value=96 Score=21.30 Aligned_cols=22 Identities=14% Similarity=0.389 Sum_probs=16.9
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++|+|+||++ |+...+...|.+
T Consensus 6 ~~ilI~Gasg---~iG~~la~~l~~ 27 (247)
T PRK05565 6 KVAIVTGASG---GIGRAIAELLAK 27 (247)
T ss_pred CEEEEeCCCc---HHHHHHHHHHHH
Confidence 4799999986 777777777654
No 169
>PLN02214 cinnamoyl-CoA reductase
Probab=21.64 E-value=91 Score=23.38 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=18.9
Q ss_pred hhhhhccccCeEEecCCCCCcChHHHHHHHHHh
Q psy430 19 AKFTKHFPHDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 19 ~d~r~~l~~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
.|....--++|++|||+. .+...+.++|.+
T Consensus 3 ~~~~~~~~~~vlVTGatG---fIG~~l~~~L~~ 32 (342)
T PLN02214 3 VDVASPAGKTVCVTGAGG---YIASWIVKILLE 32 (342)
T ss_pred cccccCCCCEEEEECCCc---HHHHHHHHHHHH
Confidence 343333345799999985 456667776654
No 170
>PRK07035 short chain dehydrogenase; Provisional
Probab=21.62 E-value=97 Score=21.58 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=16.2
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.++++||++ |+...+..+|..
T Consensus 9 k~vlItGas~---gIG~~l~~~l~~ 30 (252)
T PRK07035 9 KIALVTGASR---GIGEAIAKLLAQ 30 (252)
T ss_pred CEEEEECCCc---HHHHHHHHHHHH
Confidence 4589999996 777777766654
No 171
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=21.60 E-value=1.8e+02 Score=16.85 Aligned_cols=30 Identities=17% Similarity=0.419 Sum_probs=22.5
Q ss_pred eEEecCCCCCcC----hHHHHHHHHHhhCCCCce
Q psy430 29 VVLSGGTTMYPG----IADRMQKEITALAPSTMK 58 (107)
Q Consensus 29 IvltGG~s~~~G----~~~Rl~~eL~~~~p~~~~ 58 (107)
|-+.|+++..|. ++..+++.|++.+|....
T Consensus 31 V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~v~~ 64 (68)
T PF01106_consen 31 VRLTGACSGCPSSDMTLKQGIEQALREAVPEVKR 64 (68)
T ss_dssp EEEESSCCSSCCHHHHHHHHHHHHHHHHSTT-SE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCCce
Confidence 667899887765 567888999999986543
No 172
>PRK07478 short chain dehydrogenase; Provisional
Probab=21.51 E-value=1.1e+02 Score=21.48 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=16.4
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+++++|||++ |+...+.++|..
T Consensus 7 k~~lItGas~---giG~~ia~~l~~ 28 (254)
T PRK07478 7 KVAIITGASS---GIGRAAAKLFAR 28 (254)
T ss_pred CEEEEeCCCC---hHHHHHHHHHHH
Confidence 4699999986 777777766654
No 173
>PRK07856 short chain dehydrogenase; Provisional
Probab=21.44 E-value=98 Score=21.66 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=17.4
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.++||||++ |+...+...|..
T Consensus 7 k~~lItGas~---gIG~~la~~l~~ 28 (252)
T PRK07856 7 RVVLVTGGTR---GIGAGIARAFLA 28 (252)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHH
Confidence 4689999996 778877777754
No 174
>PRK05993 short chain dehydrogenase; Provisional
Probab=21.36 E-value=95 Score=22.24 Aligned_cols=22 Identities=14% Similarity=0.492 Sum_probs=17.6
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.++||||++ |+...+.++|..
T Consensus 5 k~vlItGasg---giG~~la~~l~~ 26 (277)
T PRK05993 5 RSILITGCSS---GIGAYCARALQS 26 (277)
T ss_pred CEEEEeCCCc---HHHHHHHHHHHH
Confidence 4699999986 888888877765
No 175
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=21.35 E-value=31 Score=25.87 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=19.6
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHh
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
.++|+|+||.+.=.-+.++|.+.+..
T Consensus 259 ~~~vvlsGGVa~N~~L~~~l~~~~~~ 284 (305)
T TIGR00329 259 PKELVLVGGVSANKRLREMLETLCQE 284 (305)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHH
Confidence 35899999998766677777776643
No 176
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=21.35 E-value=1e+02 Score=21.61 Aligned_cols=22 Identities=14% Similarity=0.424 Sum_probs=16.9
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++++++||++ |+...+.+.|.+
T Consensus 11 k~vlItGa~g---~iG~~ia~~l~~ 32 (255)
T PRK07523 11 RRALVTGSSQ---GIGYALAEGLAQ 32 (255)
T ss_pred CEEEEECCcc---hHHHHHHHHHHH
Confidence 5799999986 777777777754
No 177
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=21.35 E-value=92 Score=23.09 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=17.5
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHhh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITAL 52 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~~ 52 (107)
.+|++|||+. .+...|.++|...
T Consensus 2 ~~vlVtGatG---fIG~~l~~~L~~~ 24 (355)
T PRK10217 2 RKILITGGAG---FIGSALVRYIINE 24 (355)
T ss_pred cEEEEEcCCc---HHHHHHHHHHHHc
Confidence 5799999996 5677777777653
No 178
>PRK07890 short chain dehydrogenase; Provisional
Probab=21.19 E-value=1.1e+02 Score=21.26 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=15.7
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.|+|+||++ |+...+...|.+
T Consensus 6 k~vlItGa~~---~IG~~la~~l~~ 27 (258)
T PRK07890 6 KVVVVSGVGP---GLGRTLAVRAAR 27 (258)
T ss_pred CEEEEECCCC---cHHHHHHHHHHH
Confidence 3589999987 777666666653
No 179
>PRK12367 short chain dehydrogenase; Provisional
Probab=21.06 E-value=1.4e+02 Score=21.38 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=18.1
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.+++|||++ |+...+.++|..
T Consensus 15 k~~lITGas~---gIG~ala~~l~~ 36 (245)
T PRK12367 15 KRIGITGASG---ALGKALTKAFRA 36 (245)
T ss_pred CEEEEEcCCc---HHHHHHHHHHHH
Confidence 5799999997 888888887754
No 180
>PRK08219 short chain dehydrogenase; Provisional
Probab=21.04 E-value=1e+02 Score=20.90 Aligned_cols=23 Identities=17% Similarity=0.504 Sum_probs=16.5
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHhh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITAL 52 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~~ 52 (107)
++++++||+. ++...+.++|.+.
T Consensus 4 ~~vlVtG~~g---~iG~~l~~~l~~~ 26 (227)
T PRK08219 4 PTALITGASR---GIGAAIARELAPT 26 (227)
T ss_pred CEEEEecCCc---HHHHHHHHHHHhh
Confidence 5799999986 5666666666543
No 181
>PRK07775 short chain dehydrogenase; Provisional
Probab=20.87 E-value=1e+02 Score=22.01 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=17.5
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++++++||++ |+...+.++|..
T Consensus 11 ~~vlVtGa~g---~iG~~la~~L~~ 32 (274)
T PRK07775 11 RPALVAGASS---GIGAATAIELAA 32 (274)
T ss_pred CEEEEECCCc---hHHHHHHHHHHH
Confidence 3699999986 778888887764
No 182
>PRK07832 short chain dehydrogenase; Provisional
Probab=20.86 E-value=1e+02 Score=21.92 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=15.9
Q ss_pred CeEEecCCCCCcChHHHHHHHHHh
Q psy430 28 DVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 28 nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
.++|+||++ |+...+.++|.+
T Consensus 2 ~vlItGas~---giG~~la~~la~ 22 (272)
T PRK07832 2 RCFVTGAAS---GIGRATALRLAA 22 (272)
T ss_pred EEEEeCCCC---HHHHHHHHHHHH
Confidence 588999987 777777776654
No 183
>PRK09072 short chain dehydrogenase; Provisional
Probab=20.86 E-value=1.1e+02 Score=21.62 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=15.8
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.++++||++ |+...+.+.|.+
T Consensus 6 ~~vlItG~s~---~iG~~ia~~l~~ 27 (263)
T PRK09072 6 KRVLLTGASG---GIGQALAEALAA 27 (263)
T ss_pred CEEEEECCCc---hHHHHHHHHHHH
Confidence 3599999997 666666666643
No 184
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=20.85 E-value=1.9e+02 Score=25.14 Aligned_cols=69 Identities=20% Similarity=0.350 Sum_probs=43.0
Q ss_pred CeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCC-CCccceeehhhhhccccccccccccHHHHh-hcCch
Q psy430 28 DVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP-ERKYSVWIGGSILASLSTFQQMWISKQEYD-ESGPS 100 (107)
Q Consensus 28 nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~-~~~~~~W~Ggsi~a~l~~~~~~~Itr~eY~-e~G~~ 100 (107)
.++++|-+. +.-|...|+....|..+.+.|.... .+.|.--.=.++++.-..+.+.|+.+.||. ++|..
T Consensus 5 klvvvGnGm----ag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~ 75 (793)
T COG1251 5 KLVIIGNGM----AGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGIT 75 (793)
T ss_pred eEEEEeccc----chhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcE
Confidence 466666542 4678899999988988888887653 332221111244444356778888877775 45543
No 185
>PRK05867 short chain dehydrogenase; Provisional
Probab=20.68 E-value=1.1e+02 Score=21.50 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=16.3
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.+++|||++ |+...+.+.|.+
T Consensus 10 k~vlVtGas~---gIG~~ia~~l~~ 31 (253)
T PRK05867 10 KRALITGAST---GIGKRVALAYVE 31 (253)
T ss_pred CEEEEECCCc---hHHHHHHHHHHH
Confidence 4699999986 777777666654
No 186
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=20.66 E-value=1e+02 Score=21.82 Aligned_cols=9 Identities=44% Similarity=0.652 Sum_probs=6.1
Q ss_pred eEEecCCCC
Q psy430 29 VVLSGGTTM 37 (107)
Q Consensus 29 IvltGG~s~ 37 (107)
|+.|||++.
T Consensus 70 IITTGGtg~ 78 (193)
T PRK09417 70 VLTTGGTGP 78 (193)
T ss_pred EEECCCCCC
Confidence 677777664
No 187
>PLN00222 tubulin gamma chain; Provisional
Probab=20.61 E-value=1.4e+02 Score=24.00 Aligned_cols=23 Identities=4% Similarity=0.131 Sum_probs=18.4
Q ss_pred cChHHHHHHHHHhhCCCCceeEE
Q psy430 39 PGIADRMQKEITALAPSTMKIKI 61 (107)
Q Consensus 39 ~G~~~Rl~~eL~~~~p~~~~v~v 61 (107)
.|+..+|.+.|+...|......+
T Consensus 147 SGlgs~lle~L~d~y~~~~~~~~ 169 (454)
T PLN00222 147 SGMGSYLLEALNDRYSKKLVQTY 169 (454)
T ss_pred chHHHHHHHHHHhhcCCcceeeE
Confidence 59999999999999987654433
No 188
>PRK06057 short chain dehydrogenase; Provisional
Probab=20.57 E-value=1.1e+02 Score=21.47 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=16.8
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++|+++||++ |+..-+.++|.+
T Consensus 8 ~~vlItGasg---gIG~~~a~~l~~ 29 (255)
T PRK06057 8 RVAVITGGGS---GIGLATARRLAA 29 (255)
T ss_pred CEEEEECCCc---hHHHHHHHHHHH
Confidence 4699999986 777777777754
No 189
>PLN02405 hexokinase
Probab=20.57 E-value=1.1e+02 Score=24.97 Aligned_cols=50 Identities=20% Similarity=0.358 Sum_probs=34.9
Q ss_pred eEEecCCC-CCcChHHHHHHHHHhhCCCC--ceeEEeCCCCCccceeehhhhhccc
Q psy430 29 VVLSGGTT-MYPGIADRMQKEITALAPST--MKIKIIAPPERKYSVWIGGSILASL 81 (107)
Q Consensus 29 IvltGG~s-~~~G~~~Rl~~eL~~~~p~~--~~v~v~~~~~~~~~~W~Ggsi~a~l 81 (107)
|=+-||.- ..|+|++++++-|..+++.. -+|.+....| .+=+||+++|..
T Consensus 436 VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~l~~a~D---GSGvGAAl~AA~ 488 (497)
T PLN02405 436 IAMDGGLFEHYTEFSKCMESTLKELLGEEVSESIEVEHSND---GSGIGAALLAAS 488 (497)
T ss_pred EEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEEecC---chHHHHHHHHHH
Confidence 44444443 38999999999999998643 2466666554 466789988764
No 190
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.56 E-value=71 Score=19.56 Aligned_cols=8 Identities=38% Similarity=0.854 Sum_probs=6.3
Q ss_pred CeEEecCC
Q psy430 28 DVVLSGGT 35 (107)
Q Consensus 28 nIvltGG~ 35 (107)
.|+++||.
T Consensus 1 ~vliVGG~ 8 (97)
T PF10087_consen 1 SVLIVGGR 8 (97)
T ss_pred CEEEEcCC
Confidence 47899994
No 191
>PRK05872 short chain dehydrogenase; Provisional
Probab=20.47 E-value=1.1e+02 Score=22.38 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=16.7
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++++||||++ |+...+..+|..
T Consensus 10 k~vlItGas~---gIG~~ia~~l~~ 31 (296)
T PRK05872 10 KVVVVTGAAR---GIGAELARRLHA 31 (296)
T ss_pred CEEEEECCCc---hHHHHHHHHHHH
Confidence 4699999997 777777766654
No 192
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=20.47 E-value=1.1e+02 Score=21.29 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=16.0
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++++|+||++ |+...+.++|.+
T Consensus 13 k~vlItG~~g---~iG~~la~~l~~ 34 (247)
T PRK08945 13 RIILVTGAGD---GIGREAALTYAR 34 (247)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHH
Confidence 4699999986 667666666654
No 193
>PRK06197 short chain dehydrogenase; Provisional
Probab=20.46 E-value=1.1e+02 Score=22.34 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=16.3
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.|+||||++ |+...+.++|..
T Consensus 17 k~vlItGas~---gIG~~~a~~l~~ 38 (306)
T PRK06197 17 RVAVVTGANT---GLGYETAAALAA 38 (306)
T ss_pred CEEEEcCCCC---cHHHHHHHHHHH
Confidence 4699999986 777777666654
No 194
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.45 E-value=1.1e+02 Score=21.04 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=16.7
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.|+++||++ |+...+.+.|.+
T Consensus 6 ~~vlItGa~g---~iG~~~a~~l~~ 27 (238)
T PRK05786 6 KKVAIIGVSE---GLGYAVAYFALK 27 (238)
T ss_pred cEEEEECCCc---hHHHHHHHHHHH
Confidence 4799999985 777777777754
No 195
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=20.38 E-value=1.1e+02 Score=21.65 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=15.8
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.++||||++ |+..-+..+|.+
T Consensus 9 k~vlItGas~---gIG~~ia~~l~~ 30 (260)
T PRK08416 9 KTLVISGGTR---GIGKAIVYEFAQ 30 (260)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHH
Confidence 4689999996 776666666654
No 196
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=20.36 E-value=1.1e+02 Score=20.90 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=16.0
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++++|+||++ |+...+.+.|.+
T Consensus 6 ~~vlItG~sg---~iG~~l~~~l~~ 27 (248)
T PRK05557 6 KVALVTGASR---GIGRAIAERLAA 27 (248)
T ss_pred CEEEEECCCc---hHHHHHHHHHHH
Confidence 4689999986 677777766654
No 197
>PRK08177 short chain dehydrogenase; Provisional
Probab=20.32 E-value=1.1e+02 Score=20.95 Aligned_cols=22 Identities=9% Similarity=0.312 Sum_probs=17.2
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
++++++||++ |+...+.++|..
T Consensus 2 k~vlItG~sg---~iG~~la~~l~~ 23 (225)
T PRK08177 2 RTALIIGASR---GLGLGLVDRLLE 23 (225)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHh
Confidence 5689999986 777777777765
No 198
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.25 E-value=1.2e+02 Score=21.03 Aligned_cols=22 Identities=18% Similarity=0.594 Sum_probs=15.9
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.|+||||++ |+...+...|.+
T Consensus 6 k~ilItGas~---gIG~~la~~l~~ 27 (253)
T PRK08642 6 QTVLVTGGSR---GLGAAIARAFAR 27 (253)
T ss_pred CEEEEeCCCC---cHHHHHHHHHHH
Confidence 3699999986 777666666644
No 199
>PRK06196 oxidoreductase; Provisional
Probab=20.22 E-value=1.1e+02 Score=22.44 Aligned_cols=22 Identities=14% Similarity=0.478 Sum_probs=16.9
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.|+||||++ |+...+.++|..
T Consensus 27 k~vlITGasg---gIG~~~a~~L~~ 48 (315)
T PRK06196 27 KTAIVTGGYS---GLGLETTRALAQ 48 (315)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHH
Confidence 4699999986 777777777754
No 200
>PRK08703 short chain dehydrogenase; Provisional
Probab=20.16 E-value=1.2e+02 Score=20.96 Aligned_cols=22 Identities=18% Similarity=0.582 Sum_probs=16.6
Q ss_pred cCeEEecCCCCCcChHHHHHHHHHh
Q psy430 27 HDVVLSGGTTMYPGIADRMQKEITA 51 (107)
Q Consensus 27 ~nIvltGG~s~~~G~~~Rl~~eL~~ 51 (107)
+.++|+||++ |+...+.+.|.+
T Consensus 7 k~vlItG~sg---giG~~la~~l~~ 28 (239)
T PRK08703 7 KTILVTGASQ---GLGEQVAKAYAA 28 (239)
T ss_pred CEEEEECCCC---cHHHHHHHHHHH
Confidence 4689999986 777777777754
No 201
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=20.07 E-value=79 Score=25.29 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=26.9
Q ss_pred ccCeEEecCCCCCcChHHHHHHHHHhhCCCCceeEEeCCCCCccceeehhhhhcc
Q psy430 26 PHDVVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 80 (107)
Q Consensus 26 ~~nIvltGG~s~~~G~~~Rl~~eL~~~~p~~~~v~v~~~~~~~~~~W~Ggsi~a~ 80 (107)
.+.|+++||.++-+-+.+-+.+-+ ...|.....+. ++=+|+++++.
T Consensus 407 ~~~i~~~GG~a~s~~w~Qi~Adv~--------g~pV~~~~~~e-~~alGaAl~aa 452 (504)
T PTZ00294 407 LNSLRVDGGLTKNKLLMQFQADIL--------GKDIVVPEMAE-TTALGAALLAG 452 (504)
T ss_pred cceEEEecccccCHHHHHHHHHHh--------CCceEecCccc-chHHHHHHHHH
Confidence 467999999998766655544433 22233222222 45677777664
Done!